Query 025756
Match_columns 248
No_of_seqs 181 out of 1464
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:11:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4498 Uncharacterized conser 99.9 1.5E-27 3.2E-32 200.5 9.6 184 49-247 8-195 (197)
2 COG1225 Bcp Peroxiredoxin [Pos 99.9 1.3E-26 2.8E-31 192.1 14.9 147 68-247 3-153 (157)
3 cd02970 PRX_like2 Peroxiredoxi 99.9 2.1E-26 4.6E-31 185.7 14.0 145 74-231 1-149 (149)
4 cd03018 PRX_AhpE_like Peroxire 99.9 1.9E-22 4.2E-27 163.4 15.2 141 69-245 1-149 (149)
5 PRK13191 putative peroxiredoxi 99.9 3.4E-22 7.4E-27 174.1 16.0 143 68-247 6-158 (215)
6 PRK00522 tpx lipid hydroperoxi 99.9 1.9E-21 4.2E-26 162.7 17.2 144 69-248 18-167 (167)
7 TIGR03137 AhpC peroxiredoxin. 99.9 8.4E-22 1.8E-26 167.8 15.0 140 70-247 3-153 (187)
8 PTZ00137 2-Cys peroxiredoxin; 99.9 7.2E-22 1.6E-26 176.6 15.1 145 65-247 64-222 (261)
9 PRK13190 putative peroxiredoxi 99.9 9.1E-22 2E-26 169.7 15.2 140 69-247 2-151 (202)
10 cd03016 PRX_1cys Peroxiredoxin 99.9 1.3E-21 2.8E-26 168.7 15.9 141 71-247 1-151 (203)
11 PRK13599 putative peroxiredoxi 99.9 1.4E-21 3E-26 170.4 15.8 142 70-248 3-154 (215)
12 cd03014 PRX_Atyp2cys Peroxired 99.9 1.4E-21 3.1E-26 157.9 14.5 137 70-245 1-143 (143)
13 PRK13189 peroxiredoxin; Provis 99.9 2.4E-21 5.1E-26 169.6 15.8 142 69-247 9-160 (222)
14 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 2.5E-21 5.4E-26 151.7 13.8 120 71-227 1-124 (124)
15 PRK15000 peroxidase; Provision 99.9 4.2E-21 9.2E-26 165.5 15.6 141 70-247 3-159 (200)
16 cd03015 PRX_Typ2cys Peroxiredo 99.9 6.3E-21 1.4E-25 159.9 15.5 139 71-247 1-154 (173)
17 cd03013 PRX5_like Peroxiredoxi 99.9 4.4E-21 9.5E-26 159.0 13.7 133 71-235 1-144 (155)
18 PRK10382 alkyl hydroperoxide r 99.9 1.3E-20 2.9E-25 161.0 15.3 140 70-247 3-153 (187)
19 PRK09437 bcp thioredoxin-depen 99.9 2.7E-20 5.9E-25 152.5 16.0 147 68-247 3-153 (154)
20 cd02971 PRX_family Peroxiredox 99.8 3.3E-20 7.2E-25 148.4 15.0 134 74-242 1-139 (140)
21 PF08534 Redoxin: Redoxin; In 99.8 2.6E-20 5.7E-25 150.8 14.3 139 70-243 1-146 (146)
22 cd03017 PRX_BCP Peroxiredoxin 99.8 5.2E-20 1.1E-24 147.5 14.2 135 73-243 1-139 (140)
23 PTZ00253 tryparedoxin peroxida 99.8 2E-19 4.3E-24 154.5 15.6 141 69-247 6-161 (199)
24 KOG0855 Alkyl hydroperoxide re 99.8 3.7E-19 8.1E-24 147.6 14.4 173 28-247 32-209 (211)
25 PF13911 AhpC-TSA_2: AhpC/TSA 99.8 9.1E-19 2E-23 137.5 12.0 111 118-232 1-115 (115)
26 COG0450 AhpC Peroxiredoxin [Po 99.8 2E-18 4.4E-23 146.7 14.2 141 69-247 3-158 (194)
27 TIGR02661 MauD methylamine deh 99.8 2.1E-17 4.5E-22 141.0 14.6 136 65-248 42-180 (189)
28 cd02969 PRX_like1 Peroxiredoxi 99.7 7.3E-17 1.6E-21 134.6 14.0 133 72-247 1-149 (171)
29 PLN02399 phospholipid hydroper 99.7 2.2E-16 4.7E-21 139.5 15.3 84 70-155 74-168 (236)
30 PTZ00056 glutathione peroxidas 99.7 2.7E-16 5.9E-21 135.4 12.9 84 70-155 14-107 (199)
31 PRK03147 thiol-disulfide oxido 99.7 7.1E-16 1.5E-20 127.8 14.2 136 66-247 32-172 (173)
32 PLN02412 probable glutathione 99.7 6.7E-16 1.4E-20 129.3 12.4 82 72-155 6-98 (167)
33 cd00340 GSH_Peroxidase Glutath 99.7 2.6E-16 5.7E-21 129.2 9.0 78 75-155 2-90 (152)
34 PRK15412 thiol:disulfide inter 99.7 1.8E-15 3.9E-20 128.4 13.8 118 68-232 38-163 (185)
35 PTZ00256 glutathione peroxidas 99.7 1.8E-15 3.9E-20 128.4 13.1 83 72-155 17-110 (183)
36 cd02968 SCO SCO (an acronym fo 99.6 1.5E-15 3.2E-20 121.8 11.6 126 74-229 1-141 (142)
37 TIGR00385 dsbE periplasmic pro 99.6 2.5E-15 5.4E-20 126.1 13.3 119 66-231 31-157 (173)
38 TIGR02540 gpx7 putative glutat 99.6 1.6E-15 3.5E-20 124.5 10.6 79 75-155 2-91 (153)
39 cd03012 TlpA_like_DipZ_like Tl 99.6 3E-15 6.5E-20 118.9 10.3 103 85-231 13-125 (126)
40 cd02967 mauD Methylamine utili 99.6 2.6E-14 5.7E-19 110.6 12.4 76 76-153 1-76 (114)
41 cd03010 TlpA_like_DsbE TlpA-li 99.6 2.7E-14 5.8E-19 113.0 12.0 112 73-231 1-120 (127)
42 cd02966 TlpA_like_family TlpA- 99.5 1.9E-13 4.2E-18 103.1 11.8 109 77-229 1-115 (116)
43 KOG0854 Alkyl hydroperoxide re 99.5 2.8E-13 6E-18 113.6 13.2 151 66-248 3-166 (224)
44 PRK14018 trifunctional thiored 99.5 9.9E-13 2.1E-17 127.7 16.0 120 67-232 30-160 (521)
45 PRK10606 btuE putative glutath 99.4 3.2E-12 6.9E-17 109.0 12.1 91 73-166 3-112 (183)
46 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 6.9E-12 1.5E-16 98.2 11.1 85 76-167 1-91 (123)
47 cd03009 TryX_like_TryX_NRX Try 99.4 2.8E-12 6.2E-17 102.0 8.8 71 80-152 3-76 (131)
48 cd03008 TryX_like_RdCVF Trypar 99.3 7.2E-12 1.6E-16 103.2 10.0 65 86-152 16-88 (146)
49 TIGR01626 ytfJ_HI0045 conserve 99.3 1.7E-11 3.7E-16 104.6 10.2 128 69-246 23-179 (184)
50 PLN02919 haloacid dehalogenase 99.3 1.8E-11 3.9E-16 128.0 12.4 134 68-246 390-535 (1057)
51 PRK13728 conjugal transfer pro 99.3 2.9E-11 6.3E-16 102.9 11.3 104 70-231 50-157 (181)
52 KOG0852 Alkyl hydroperoxide re 99.2 1.6E-10 3.5E-15 96.9 13.0 140 70-247 5-158 (196)
53 cd02964 TryX_like_family Trypa 99.2 7.1E-11 1.5E-15 94.5 8.4 65 86-152 8-75 (132)
54 COG2077 Tpx Peroxiredoxin [Pos 99.1 3.3E-09 7.2E-14 87.1 12.8 136 67-238 16-157 (158)
55 PF13905 Thioredoxin_8: Thiore 99.0 1.1E-09 2.3E-14 82.1 8.3 57 97-153 1-59 (95)
56 KOG0541 Alkyl hydroperoxide re 98.7 4.8E-08 1E-12 80.7 8.3 145 69-245 9-170 (171)
57 TIGR02738 TrbB type-F conjugat 98.7 7.6E-08 1.6E-12 79.9 9.2 49 84-141 43-91 (153)
58 PF02630 SCO1-SenC: SCO1/SenC; 98.7 2.4E-07 5.1E-12 78.2 11.1 80 71-152 28-114 (174)
59 COG0678 AHP1 Peroxiredoxin [Po 98.6 1.7E-07 3.6E-12 77.2 8.7 103 69-171 3-120 (165)
60 COG1999 Uncharacterized protei 98.5 1.2E-06 2.7E-11 76.0 11.1 135 77-247 49-201 (207)
61 cd02950 TxlA TRX-like protein 98.4 1.1E-06 2.4E-11 71.8 7.5 61 79-140 2-62 (142)
62 KOG2501 Thioredoxin, nucleored 98.3 9E-07 1.9E-11 73.5 4.6 93 75-168 12-114 (157)
63 TIGR02740 TraF-like TraF-like 98.2 1.2E-05 2.6E-10 72.6 11.5 51 86-141 157-207 (271)
64 COG0386 BtuE Glutathione perox 98.2 1.5E-05 3.2E-10 66.1 10.6 80 73-155 3-93 (162)
65 KOG1651 Glutathione peroxidase 98.0 9.7E-05 2.1E-09 61.9 11.1 82 72-155 11-103 (171)
66 cd02951 SoxW SoxW family; SoxW 98.0 2.1E-05 4.6E-10 61.9 6.7 46 95-141 11-60 (125)
67 cd02985 TRX_CDSP32 TRX family, 97.9 4.1E-05 8.9E-10 58.7 7.2 53 97-151 15-67 (103)
68 PF00255 GSHPx: Glutathione pe 97.9 7.3E-05 1.6E-09 58.7 8.3 71 77-150 3-81 (108)
69 cd02948 TRX_NDPK TRX domain, T 97.8 2.9E-05 6.2E-10 59.4 4.9 50 93-142 13-62 (102)
70 PF05988 DUF899: Bacterial pro 97.8 0.00038 8.1E-09 60.6 12.0 78 77-155 48-131 (211)
71 PF13098 Thioredoxin_2: Thiore 97.7 0.00016 3.4E-09 55.4 7.7 46 97-142 5-52 (112)
72 cd02963 TRX_DnaJ TRX domain, D 97.5 0.00029 6.3E-09 54.7 6.8 46 96-141 23-68 (111)
73 PF00837 T4_deiodinase: Iodoth 97.5 0.00063 1.4E-08 60.3 9.3 61 68-128 72-133 (237)
74 cd02999 PDI_a_ERp44_like PDIa 97.5 0.00026 5.7E-09 54.1 5.9 42 96-139 17-58 (100)
75 cd02993 PDI_a_APS_reductase PD 97.4 0.00041 8.8E-09 53.5 6.1 44 97-140 21-64 (109)
76 cd03003 PDI_a_ERdj5_N PDIa fam 97.4 0.0003 6.4E-09 53.2 4.9 47 94-141 15-61 (101)
77 cd03000 PDI_a_TMX3 PDIa family 97.3 0.00067 1.4E-08 51.7 6.0 44 97-140 15-60 (104)
78 cd03005 PDI_a_ERp46 PDIa famil 97.2 0.00041 8.9E-09 51.9 4.2 48 93-141 13-62 (102)
79 cd02996 PDI_a_ERp44 PDIa famil 97.2 0.00063 1.4E-08 52.1 5.2 50 92-141 13-67 (108)
80 cd03006 PDI_a_EFP1_N PDIa fami 97.2 0.0015 3.3E-08 51.4 7.3 48 94-142 26-73 (113)
81 cd02956 ybbN ybbN protein fami 97.2 0.0011 2.4E-08 49.3 6.0 44 97-141 12-55 (96)
82 cd02953 DsbDgamma DsbD gamma f 97.1 0.0008 1.7E-08 51.0 5.0 56 95-151 9-68 (104)
83 PRK10996 thioredoxin 2; Provis 97.1 0.0005 1.1E-08 55.7 4.0 51 89-140 44-94 (139)
84 cd02995 PDI_a_PDI_a'_C PDIa fa 97.1 0.00095 2E-08 49.9 5.0 46 97-142 18-64 (104)
85 cd02994 PDI_a_TMX PDIa family, 97.1 0.001 2.2E-08 50.1 5.1 48 92-141 13-60 (101)
86 cd02997 PDI_a_PDIR PDIa family 97.1 0.00067 1.4E-08 50.8 4.1 51 90-140 10-61 (104)
87 cd03002 PDI_a_MPD1_like PDI fa 97.0 0.0017 3.6E-08 49.3 5.9 44 96-140 17-60 (109)
88 cd02949 TRX_NTR TRX domain, no 97.0 0.0017 3.7E-08 48.8 5.6 46 94-140 10-55 (97)
89 PRK09381 trxA thioredoxin; Pro 97.0 0.0018 3.8E-08 49.5 5.5 44 97-141 21-64 (109)
90 cd02998 PDI_a_ERp38 PDIa famil 97.0 0.0013 2.8E-08 49.2 4.6 44 97-140 18-62 (105)
91 cd02962 TMX2 TMX2 family; comp 97.0 0.0022 4.9E-08 53.1 6.4 46 97-142 47-92 (152)
92 cd03004 PDI_a_ERdj5_C PDIa fam 96.9 0.0036 7.8E-08 47.3 6.9 45 97-142 19-63 (104)
93 PTZ00051 thioredoxin; Provisio 96.9 0.0015 3.3E-08 48.6 4.6 47 92-140 13-59 (98)
94 PF00085 Thioredoxin: Thioredo 96.9 0.0019 4E-08 48.0 4.8 44 97-141 17-60 (103)
95 KOG2792 Putative cytochrome C 96.9 0.004 8.6E-08 55.8 7.4 80 67-151 114-201 (280)
96 TIGR01126 pdi_dom protein disu 96.8 0.002 4.3E-08 47.8 4.7 49 92-140 8-57 (102)
97 cd02961 PDI_a_family Protein D 96.8 0.0019 4.2E-08 47.1 4.3 50 91-140 9-59 (101)
98 cd02984 TRX_PICOT TRX domain, 96.7 0.0045 9.8E-08 45.9 6.1 41 98-139 15-55 (97)
99 TIGR01295 PedC_BrcD bacterioci 96.7 0.0026 5.5E-08 50.6 4.7 46 92-140 18-63 (122)
100 COG4312 Uncharacterized protei 96.7 0.013 2.9E-07 51.3 9.4 89 79-167 55-153 (247)
101 cd03001 PDI_a_P5 PDIa family, 96.7 0.0054 1.2E-07 45.8 6.3 45 96-141 17-61 (103)
102 cd02947 TRX_family TRX family; 96.7 0.0035 7.5E-08 44.7 4.9 43 96-140 9-51 (93)
103 cd02959 ERp19 Endoplasmic reti 96.7 0.0034 7.3E-08 49.5 5.1 43 97-140 19-61 (117)
104 cd02992 PDI_a_QSOX PDIa family 96.7 0.0081 1.8E-07 46.9 7.1 43 97-139 19-63 (114)
105 cd02986 DLP Dim1 family, Dim1- 96.5 0.0077 1.7E-07 47.7 5.8 45 96-141 13-57 (114)
106 TIGR01068 thioredoxin thioredo 96.4 0.0089 1.9E-07 44.0 5.9 44 97-141 14-57 (101)
107 cd02954 DIM1 Dim1 family; Dim1 96.3 0.012 2.7E-07 46.5 6.2 43 97-140 14-56 (114)
108 COG0526 TrxA Thiol-disulfide i 96.3 0.014 3.1E-07 42.3 6.2 51 96-148 32-84 (127)
109 TIGR01130 ER_PDI_fam protein d 96.3 0.0049 1.1E-07 58.1 4.6 53 92-144 13-67 (462)
110 PHA02278 thioredoxin-like prot 96.2 0.0077 1.7E-07 46.6 4.6 45 95-140 12-56 (103)
111 cd01659 TRX_superfamily Thiore 96.1 0.012 2.5E-07 38.0 4.6 45 101-147 1-45 (69)
112 PF13728 TraF: F plasmid trans 96.0 0.025 5.5E-07 49.4 7.2 67 90-168 115-182 (215)
113 PLN00410 U5 snRNP protein, DIM 95.8 0.022 4.8E-07 46.8 5.8 46 97-143 23-68 (142)
114 TIGR00424 APS_reduc 5'-adenyly 95.7 0.02 4.3E-07 55.6 5.9 46 96-141 370-415 (463)
115 cd02952 TRP14_like Human TRX-r 95.7 0.02 4.2E-07 45.7 4.8 43 98-141 22-71 (119)
116 cd03065 PDI_b_Calsequestrin_N 95.6 0.021 4.6E-07 45.5 4.8 47 95-141 25-76 (120)
117 PLN02309 5'-adenylylsulfate re 95.5 0.03 6.4E-07 54.3 6.3 44 96-139 364-407 (457)
118 KOG0907 Thioredoxin [Posttrans 95.5 0.029 6.3E-07 43.7 5.0 50 97-151 21-70 (106)
119 TIGR00411 redox_disulf_1 small 95.5 0.034 7.4E-07 39.7 5.1 40 100-140 2-41 (82)
120 PRK00293 dipZ thiol:disulfide 95.4 0.06 1.3E-06 53.6 8.3 41 97-139 474-517 (571)
121 PTZ00443 Thioredoxin domain-co 95.4 0.032 6.9E-07 49.2 5.7 43 98-141 53-95 (224)
122 PTZ00102 disulphide isomerase; 95.3 0.023 5E-07 54.2 4.7 51 91-141 43-95 (477)
123 cd02957 Phd_like Phosducin (Ph 95.3 0.049 1.1E-06 42.1 5.8 41 98-140 25-65 (113)
124 PF09695 YtfJ_HI0045: Bacteria 95.3 0.37 8E-06 40.3 11.2 32 213-247 127-158 (160)
125 cd02975 PfPDO_like_N Pyrococcu 95.1 0.07 1.5E-06 41.5 6.3 42 97-140 22-63 (113)
126 cd02989 Phd_like_TxnDC9 Phosdu 94.9 0.1 2.3E-06 40.6 6.7 44 96-141 21-64 (113)
127 PF13899 Thioredoxin_7: Thiore 94.7 0.14 3E-06 37.3 6.4 57 97-154 17-75 (82)
128 PF05176 ATP-synt_10: ATP10 pr 94.2 0.41 8.9E-06 42.9 9.5 78 70-148 96-174 (252)
129 PTZ00102 disulphide isomerase; 94.1 0.073 1.6E-06 50.8 4.8 60 80-141 359-420 (477)
130 cd02982 PDI_b'_family Protein 94.0 0.12 2.5E-06 38.6 4.8 43 98-141 13-55 (103)
131 TIGR02739 TraF type-F conjugat 93.9 0.16 3.5E-06 45.7 6.5 42 96-141 150-191 (256)
132 TIGR02200 GlrX_actino Glutared 93.8 0.18 4E-06 35.3 5.4 34 101-141 2-35 (77)
133 cd02965 HyaE HyaE family; HyaE 93.6 0.099 2.1E-06 41.2 4.0 44 96-140 27-71 (111)
134 PRK13703 conjugal pilus assemb 93.6 0.1 2.2E-06 46.7 4.6 47 90-141 138-184 (248)
135 TIGR02196 GlrX_YruB Glutaredox 93.5 0.38 8.3E-06 32.9 6.5 45 101-152 2-47 (74)
136 KOG0910 Thioredoxin-like prote 93.4 0.12 2.6E-06 42.9 4.2 43 97-140 61-103 (150)
137 PF13778 DUF4174: Domain of un 93.2 0.75 1.6E-05 36.3 8.5 52 90-141 3-54 (118)
138 PF04592 SelP_N: Selenoprotein 93.0 1.1 2.3E-05 39.9 9.9 45 97-141 26-73 (238)
139 PF07976 Phe_hydrox_dim: Pheno 93.0 0.13 2.7E-06 43.3 4.0 105 66-170 27-167 (169)
140 cd02973 TRX_GRX_like Thioredox 92.8 0.26 5.6E-06 34.0 4.8 38 101-140 3-40 (67)
141 cd02987 Phd_like_Phd Phosducin 92.7 0.27 5.8E-06 41.5 5.6 41 98-140 84-124 (175)
142 TIGR00412 redox_disulf_2 small 92.7 0.28 6E-06 35.4 4.9 38 103-143 4-41 (76)
143 TIGR01130 ER_PDI_fam protein d 92.6 0.24 5.3E-06 46.6 5.8 46 96-141 363-410 (462)
144 cd02955 SSP411 TRX domain, SSP 92.3 0.36 7.8E-06 38.6 5.6 65 96-161 14-93 (124)
145 PHA02125 thioredoxin-like prot 92.2 0.56 1.2E-05 33.5 6.0 21 101-121 2-22 (75)
146 COG3118 Thioredoxin domain-con 92.0 0.3 6.5E-06 44.8 5.3 45 98-143 44-88 (304)
147 PF06110 DUF953: Eukaryotic pr 91.4 0.6 1.3E-05 37.2 5.9 45 96-141 19-69 (119)
148 TIGR02187 GlrX_arch Glutaredox 91.3 0.55 1.2E-05 40.5 6.0 43 95-139 18-62 (215)
149 PRK01655 spxA transcriptional 90.9 0.73 1.6E-05 37.0 6.0 62 101-169 2-71 (131)
150 PRK08294 phenol 2-monooxygenas 90.4 1.5 3.3E-05 44.2 9.1 75 67-141 461-552 (634)
151 cd02958 UAS UAS family; UAS is 90.0 0.51 1.1E-05 36.3 4.3 60 96-157 16-85 (114)
152 TIGR02190 GlrX-dom Glutaredoxi 89.8 1.1 2.4E-05 32.3 5.7 44 101-151 10-53 (79)
153 TIGR02187 GlrX_arch Glutaredox 89.4 0.9 2E-05 39.2 5.8 43 96-140 132-174 (215)
154 cd03026 AhpF_NTD_C TRX-GRX-lik 89.3 0.73 1.6E-05 34.4 4.5 42 96-139 11-52 (89)
155 cd02979 PHOX_C FAD-dependent P 88.8 2.6 5.7E-05 35.2 8.0 71 72-142 1-87 (167)
156 PRK12559 transcriptional regul 88.7 1.9 4.2E-05 34.6 6.9 62 101-169 2-71 (131)
157 PRK11657 dsbG disulfide isomer 88.7 9.5 0.00021 34.0 12.0 28 96-123 116-143 (251)
158 cd03036 ArsC_like Arsenate Red 88.6 1.6 3.5E-05 33.9 6.1 61 102-169 2-70 (111)
159 PF00462 Glutaredoxin: Glutare 88.6 1.5 3.3E-05 29.6 5.4 38 101-145 1-38 (60)
160 PRK08132 FAD-dependent oxidore 88.2 3.5 7.6E-05 40.4 9.7 37 67-104 425-461 (547)
161 PTZ00062 glutaredoxin; Provisi 88.0 0.94 2E-05 39.4 4.9 38 98-137 18-55 (204)
162 cd02977 ArsC_family Arsenate R 87.8 1.8 3.9E-05 32.9 5.9 61 101-168 1-69 (105)
163 PRK06184 hypothetical protein; 87.8 4.7 0.0001 39.0 10.1 58 67-139 384-442 (502)
164 PF13462 Thioredoxin_4: Thiore 87.5 1.8 3.8E-05 34.6 6.0 50 87-138 4-54 (162)
165 cd03032 ArsC_Spx Arsenate Redu 87.4 2.4 5.3E-05 32.9 6.6 62 101-169 2-71 (115)
166 TIGR02180 GRX_euk Glutaredoxin 87.1 1.8 3.8E-05 30.8 5.2 45 101-148 1-46 (84)
167 cd02988 Phd_like_VIAF Phosduci 87.1 1.3 2.8E-05 38.0 5.2 40 98-139 103-142 (192)
168 PRK11200 grxA glutaredoxin 1; 87.0 2.3 5.1E-05 30.9 5.9 38 101-140 3-40 (85)
169 smart00594 UAS UAS domain. 87.0 2.2 4.8E-05 33.4 6.2 62 96-159 26-97 (122)
170 KOG0190 Protein disulfide isom 86.8 0.82 1.8E-05 44.8 4.2 60 90-152 35-96 (493)
171 cd02976 NrdH NrdH-redoxin (Nrd 86.5 3.5 7.7E-05 27.9 6.4 42 101-149 2-44 (73)
172 cd03023 DsbA_Com1_like DsbA fa 85.8 1.4 3.1E-05 34.6 4.6 39 96-136 4-42 (154)
173 cd02960 AGR Anterior Gradient 85.3 1.4 3.1E-05 35.6 4.3 27 96-122 22-48 (130)
174 TIGR03759 conj_TIGR03759 integ 85.3 3.9 8.5E-05 35.5 7.2 54 96-155 108-162 (200)
175 cd03029 GRX_hybridPRX5 Glutare 84.9 3.4 7.5E-05 28.8 5.7 40 101-147 3-42 (72)
176 cd03028 GRX_PICOT_like Glutare 84.5 3.5 7.6E-05 30.6 5.9 30 92-122 3-36 (90)
177 TIGR01617 arsC_related transcr 84.2 3.8 8.2E-05 31.9 6.2 60 102-168 2-69 (117)
178 TIGR02194 GlrX_NrdH Glutaredox 84.1 3.6 7.8E-05 28.9 5.6 41 101-148 1-41 (72)
179 KOG0191 Thioredoxin/protein di 84.0 1.5 3.3E-05 41.2 4.5 59 96-155 46-104 (383)
180 PRK13344 spxA transcriptional 83.9 4.3 9.4E-05 32.6 6.6 62 101-169 2-71 (132)
181 TIGR00365 monothiol glutaredox 83.7 3.7 8.1E-05 31.0 5.8 45 93-145 8-56 (97)
182 cd03035 ArsC_Yffb Arsenate Red 82.7 4 8.7E-05 31.4 5.7 61 101-168 1-67 (105)
183 cd03027 GRX_DEP Glutaredoxin ( 81.9 6.9 0.00015 27.4 6.3 43 101-150 3-46 (73)
184 cd03418 GRX_GRXb_1_3_like Glut 81.9 6.8 0.00015 27.2 6.3 43 101-150 2-45 (75)
185 PRK10638 glutaredoxin 3; Provi 81.4 5.4 0.00012 28.8 5.8 45 101-152 4-49 (83)
186 cd02066 GRX_family Glutaredoxi 79.4 6.1 0.00013 26.4 5.2 35 101-142 2-36 (72)
187 PRK10329 glutaredoxin-like pro 78.6 8.3 0.00018 28.1 5.9 39 101-146 3-41 (81)
188 TIGR00995 3a0901s06TIC22 chlor 77.7 3.4 7.4E-05 37.5 4.3 72 69-144 76-147 (270)
189 KOG3425 Uncharacterized conser 77.6 4 8.7E-05 32.8 4.2 45 96-141 25-76 (128)
190 COG0695 GrxC Glutaredoxin and 77.3 6 0.00013 28.8 4.9 44 101-151 3-48 (80)
191 PF14595 Thioredoxin_9: Thiore 77.2 3.4 7.3E-05 33.1 3.8 41 97-139 41-81 (129)
192 PRK10824 glutaredoxin-4; Provi 77.2 5.8 0.00013 31.3 5.1 30 92-122 10-43 (115)
193 KOG0191 Thioredoxin/protein di 77.1 3.7 8E-05 38.6 4.6 57 98-154 163-220 (383)
194 cd03419 GRX_GRXh_1_2_like Glut 76.8 7.7 0.00017 27.3 5.3 35 101-140 2-36 (82)
195 TIGR02189 GlrX-like_plant Glut 75.9 5.6 0.00012 30.2 4.5 25 94-120 5-29 (99)
196 cd03020 DsbA_DsbC_DsbG DsbA fa 75.4 5 0.00011 33.9 4.6 35 97-136 77-111 (197)
197 PRK10877 protein disulfide iso 74.6 6.4 0.00014 34.6 5.2 37 96-136 106-142 (232)
198 PHA03050 glutaredoxin; Provisi 74.1 3.7 7.9E-05 31.9 3.1 27 93-121 9-35 (108)
199 PRK06183 mhpA 3-(3-hydroxyphen 73.9 32 0.00069 33.6 10.4 65 68-140 410-475 (538)
200 COG2179 Predicted hydrolase of 71.6 8.2 0.00018 32.8 4.8 39 117-155 49-87 (175)
201 TIGR02183 GRXA Glutaredoxin, G 71.3 7.6 0.00017 28.4 4.2 37 101-139 2-38 (86)
202 PF05768 DUF836: Glutaredoxin- 71.3 10 0.00023 27.4 4.9 47 101-153 2-48 (81)
203 KOG0908 Thioredoxin-like prote 70.7 4.2 9.1E-05 36.7 3.0 31 96-126 20-50 (288)
204 cd03019 DsbA_DsbA DsbA family, 70.7 6.1 0.00013 32.0 3.9 38 96-134 14-51 (178)
205 KOG0190 Protein disulfide isom 69.6 7.1 0.00015 38.4 4.6 43 96-139 383-425 (493)
206 cd03034 ArsC_ArsC Arsenate Red 68.5 20 0.00043 27.7 6.2 62 101-169 1-70 (112)
207 TIGR02181 GRX_bact Glutaredoxi 67.5 5.3 0.00012 28.3 2.6 44 101-151 1-45 (79)
208 TIGR00014 arsC arsenate reduct 66.5 23 0.00051 27.4 6.3 62 101-169 1-71 (114)
209 PRK10853 putative reductase; P 62.8 18 0.00039 28.5 5.0 62 101-169 2-69 (118)
210 cd02972 DsbA_family DsbA famil 61.0 11 0.00025 26.5 3.3 36 101-137 1-36 (98)
211 PF13192 Thioredoxin_3: Thiore 58.6 40 0.00086 23.9 5.8 33 106-141 7-39 (76)
212 PRK10026 arsenate reductase; P 57.4 43 0.00094 27.4 6.5 63 100-169 3-73 (141)
213 cd03007 PDI_a_ERp29_N PDIa fam 56.6 19 0.00041 28.5 4.1 46 90-140 11-61 (116)
214 cd02991 UAS_ETEA UAS family, E 55.1 38 0.00083 26.5 5.6 57 96-155 16-79 (116)
215 PTZ00062 glutaredoxin; Provisi 53.5 14 0.00031 32.0 3.2 51 90-148 106-160 (204)
216 COG1651 DsbG Protein-disulfide 53.3 28 0.0006 30.1 5.1 47 79-127 68-114 (244)
217 COG3019 Predicted metal-bindin 51.1 42 0.00091 27.7 5.3 42 98-146 25-66 (149)
218 KOG1752 Glutaredoxin and relat 50.4 25 0.00055 27.2 3.8 33 99-139 15-47 (104)
219 KOG0912 Thiol-disulfide isomer 49.4 41 0.0009 31.4 5.6 33 97-129 13-45 (375)
220 PF06053 DUF929: Domain of unk 46.8 26 0.00056 31.5 3.8 38 92-129 53-90 (249)
221 PF11948 DUF3465: Protein of u 46.4 34 0.00075 27.8 4.1 31 206-237 89-119 (131)
222 PF04278 Tic22: Tic22-like fam 42.9 18 0.00038 32.9 2.2 67 70-144 70-141 (274)
223 TIGR03765 ICE_PFL_4695 integra 42.4 1.2E+02 0.0027 23.6 6.5 57 114-170 35-94 (105)
224 cd01427 HAD_like Haloacid deha 41.9 46 0.001 24.5 4.2 37 117-153 27-63 (139)
225 PHA00159 endonuclease I 40.0 35 0.00076 28.1 3.2 63 74-155 52-120 (148)
226 TIGR02174 CXXU_selWTH selT/sel 39.2 65 0.0014 22.9 4.3 35 210-247 38-72 (72)
227 cd04256 AAK_P5CS_ProBA AAK_P5C 38.7 57 0.0012 29.6 4.8 40 110-149 27-66 (284)
228 KOG1731 FAD-dependent sulfhydr 38.7 11 0.00024 37.7 0.2 47 96-142 56-104 (606)
229 cd03033 ArsC_15kD Arsenate Red 38.3 86 0.0019 24.4 5.2 62 101-169 2-69 (113)
230 KOG2741 Dimeric dihydrodiol de 38.2 48 0.001 31.3 4.3 44 111-154 13-56 (351)
231 COG1393 ArsC Arsenate reductas 38.0 68 0.0015 25.2 4.6 63 100-169 2-72 (117)
232 COG2910 Putative NADH-flavin r 37.8 1.1E+02 0.0023 26.8 6.0 47 92-138 58-105 (211)
233 PF04134 DUF393: Protein of un 37.6 53 0.0011 24.8 3.9 17 106-122 4-20 (114)
234 PRK05578 cytidine deaminase; V 37.2 18 0.0004 29.1 1.3 43 106-155 83-125 (131)
235 cd01460 vWA_midasin VWA_Midasi 37.2 28 0.00061 31.5 2.6 21 121-141 185-205 (266)
236 PF12710 HAD: haloacid dehalog 36.2 44 0.00095 27.1 3.4 35 121-155 96-130 (192)
237 TIGR01354 cyt_deam_tetra cytid 36.1 21 0.00046 28.4 1.4 42 107-155 81-122 (127)
238 COG0560 SerB Phosphoserine pho 34.6 58 0.0013 28.1 4.1 36 120-155 83-118 (212)
239 cd03040 GST_N_mPGES2 GST_N fam 34.3 52 0.0011 22.8 3.2 20 102-121 3-22 (77)
240 cd01284 Riboflavin_deaminase-r 33.7 61 0.0013 25.4 3.7 38 209-247 19-56 (115)
241 cd03423 SirA SirA (also known 33.3 37 0.0008 23.8 2.2 49 103-155 3-53 (69)
242 PF02844 GARS_N: Phosphoribosy 32.5 40 0.00088 26.0 2.4 44 118-161 50-96 (100)
243 PF11072 DUF2859: Protein of u 32.4 1.7E+02 0.0038 24.0 6.2 57 114-170 73-132 (142)
244 COG4615 PvdE ABC-type sideroph 31.2 1.2E+02 0.0027 29.6 5.9 55 93-149 463-520 (546)
245 TIGR01761 thiaz-red thiazoliny 31.1 73 0.0016 29.8 4.4 43 108-155 10-52 (343)
246 PF01323 DSBA: DSBA-like thior 30.7 1.5E+02 0.0031 24.1 5.7 41 101-141 2-42 (193)
247 cd03060 GST_N_Omega_like GST_N 30.5 55 0.0012 22.4 2.7 21 102-122 2-22 (71)
248 PRK12759 bifunctional gluaredo 29.9 1.1E+02 0.0023 29.3 5.4 34 101-141 4-37 (410)
249 COG5561 Predicted metal-bindin 29.7 37 0.00081 25.9 1.7 30 107-137 5-34 (101)
250 PF10262 Rdx: Rdx family; Int 29.6 29 0.00064 24.8 1.2 35 210-247 40-74 (76)
251 TIGR01488 HAD-SF-IB Haloacid D 29.3 1.1E+02 0.0024 24.4 4.7 36 119-154 78-113 (177)
252 TIGR01616 nitro_assoc nitrogen 29.2 1.5E+02 0.0033 23.5 5.4 62 101-169 3-70 (126)
253 cd03041 GST_N_2GST_N GST_N fam 28.9 53 0.0012 23.0 2.4 21 101-121 2-22 (77)
254 PF09419 PGP_phosphatase: Mito 28.9 97 0.0021 26.1 4.3 80 74-155 17-109 (168)
255 PF03544 TonB_C: Gram-negative 28.9 1.1E+02 0.0024 21.1 4.1 34 213-247 20-53 (79)
256 TIGR01490 HAD-SF-IB-hyp1 HAD-s 28.7 1.3E+02 0.0029 24.6 5.3 32 123-154 96-127 (202)
257 TIGR01352 tonB_Cterm TonB fami 28.6 84 0.0018 21.4 3.4 32 214-247 15-47 (74)
258 PF00875 DNA_photolyase: DNA p 28.6 1.2E+02 0.0025 24.6 4.8 58 97-154 25-90 (165)
259 PF03960 ArsC: ArsC family; I 28.4 2.2E+02 0.0047 21.5 6.0 54 106-166 3-64 (110)
260 KOG4530 Predicted flavoprotein 28.4 72 0.0016 27.1 3.4 28 94-121 116-143 (199)
261 cd01821 Rhamnogalacturan_acety 28.4 1.3E+02 0.0029 24.6 5.2 28 113-140 90-117 (198)
262 cd05017 SIS_PGI_PMI_1 The memb 28.2 1.8E+02 0.0039 22.1 5.6 50 97-154 43-92 (119)
263 PRK12411 cytidine deaminase; P 28.0 31 0.00067 27.8 1.1 42 107-155 84-125 (132)
264 PF02514 CobN-Mg_chel: CobN/Ma 27.8 1.2E+02 0.0025 33.1 5.7 69 98-169 73-162 (1098)
265 cd01285 nucleoside_deaminase N 27.5 1.1E+02 0.0024 23.3 4.1 37 209-247 17-58 (109)
266 PRK10954 periplasmic protein d 27.4 93 0.002 26.4 4.1 37 97-135 38-77 (207)
267 cd03420 SirA_RHOD_Pry_redox Si 27.0 95 0.0021 21.7 3.5 49 103-155 3-53 (69)
268 PRK11320 prpB 2-methylisocitra 26.4 2.8E+02 0.0061 25.4 7.3 70 100-171 151-232 (292)
269 TIGR01662 HAD-SF-IIIA HAD-supe 26.2 1.4E+02 0.003 22.8 4.7 37 118-154 29-73 (132)
270 PRK11869 2-oxoacid ferredoxin 26.2 59 0.0013 29.6 2.7 24 103-126 5-30 (280)
271 PF13419 HAD_2: Haloacid dehal 26.2 1.3E+02 0.0027 23.4 4.4 32 121-152 84-115 (176)
272 cd00570 GST_N_family Glutathio 26.0 1.5E+02 0.0032 18.8 4.2 33 103-140 3-35 (71)
273 PF00702 Hydrolase: haloacid d 24.8 1E+02 0.0023 25.1 3.9 36 118-153 131-166 (215)
274 TIGR00338 serB phosphoserine p 24.8 1.4E+02 0.0031 24.9 4.8 33 122-154 93-125 (219)
275 COG4469 CoiA Competence protei 24.7 18 0.00039 33.8 -0.9 35 78-117 2-36 (342)
276 cd05013 SIS_RpiR RpiR-like pro 24.4 1.6E+02 0.0036 22.1 4.7 46 98-149 61-106 (139)
277 COG3054 Predicted transcriptio 24.2 90 0.0019 26.3 3.2 32 213-247 149-180 (184)
278 PRK06848 hypothetical protein; 23.9 51 0.0011 26.8 1.7 40 107-155 95-134 (139)
279 PF03190 Thioredox_DsbH: Prote 23.6 1.7E+02 0.0037 24.5 4.9 66 97-162 37-116 (163)
280 COG4232 Thiol:disulfide interc 23.0 59 0.0013 32.7 2.3 64 89-152 464-531 (569)
281 COG1877 OtsB Trehalose-6-phosp 22.9 3.7E+02 0.0081 24.3 7.2 95 117-235 43-147 (266)
282 PLN02311 chalcone isomerase 22.8 1.8E+02 0.0039 26.5 5.1 91 1-92 1-94 (271)
283 PF01380 SIS: SIS domain SIS d 22.7 1.9E+02 0.0041 21.7 4.8 45 99-149 55-99 (131)
284 PRK13600 putative ribosomal pr 22.4 2.4E+02 0.0052 21.0 5.0 50 121-170 20-76 (84)
285 PF14968 CCDC84: Coiled coil p 22.3 21 0.00045 33.5 -0.9 15 105-119 57-71 (336)
286 PRK00299 sulfur transfer prote 22.3 1.3E+02 0.0028 21.9 3.5 54 98-155 8-63 (81)
287 TIGR01670 YrbI-phosphatas 3-de 22.1 1.4E+02 0.0031 23.9 4.1 33 122-154 36-68 (154)
288 TIGR01689 EcbF-BcbF capsule bi 22.0 2.1E+02 0.0045 22.8 4.9 37 119-155 29-80 (126)
289 TIGR00035 asp_race aspartate r 21.9 1.5E+02 0.0033 25.6 4.4 54 115-168 60-118 (229)
290 TIGR02319 CPEP_Pphonmut carbox 21.9 3.7E+02 0.0081 24.6 7.1 70 100-171 150-231 (294)
291 COG1465 Predicted alternative 21.6 98 0.0021 28.8 3.2 39 70-108 325-366 (376)
292 COG4607 CeuA ABC-type enteroch 21.3 2.3E+02 0.0049 26.5 5.5 60 72-150 37-98 (320)
293 cd03059 GST_N_SspA GST_N famil 21.3 1.7E+02 0.0038 19.5 3.9 19 103-121 3-21 (73)
294 KOG3110 Riboflavin kinase [Coe 21.1 36 0.00079 27.9 0.3 17 28-44 65-82 (153)
295 PF02966 DIM1: Mitosis protein 20.8 2.6E+02 0.0056 22.8 5.1 47 96-143 19-65 (133)
296 PHA00003 B internal scaffoldin 20.8 35 0.00076 26.8 0.2 29 102-133 73-101 (120)
297 KOG3414 Component of the U4/U6 20.7 4.5E+02 0.0097 21.5 6.4 45 96-141 22-66 (142)
298 TIGR01491 HAD-SF-IB-PSPlk HAD- 20.6 2E+02 0.0044 23.3 4.8 34 121-154 87-120 (201)
299 PF00626 Gelsolin: Gelsolin re 20.5 1.3E+02 0.0028 20.6 3.1 23 208-232 14-36 (76)
300 PF13344 Hydrolase_6: Haloacid 20.3 1.9E+02 0.0041 21.7 4.2 36 120-155 20-58 (101)
301 cd03051 GST_N_GTT2_like GST_N 20.2 95 0.0021 20.7 2.3 21 102-122 2-22 (74)
No 1
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.5e-27 Score=200.54 Aligned_cols=184 Identities=36% Similarity=0.619 Sum_probs=147.0
Q ss_pred CCCCCceeeecccCCCCCCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHH
Q 025756 49 PRRPSHVIASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~ 128 (248)
|++|.+.++|..+.-...|. .++...+ .|..|+.|++++||++++.||.|.||++|..||+++.+|.+..+-+++
T Consensus 8 p~t~~~l~~s~i~pa~sgp~--~~q~~a~---l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~ 82 (197)
T KOG4498|consen 8 PSTRLPLIASTIVPARSGPM--IGQLPAN---LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDE 82 (197)
T ss_pred chhhhhHHHhhcccccCCcc--ccccchh---hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHH
Confidence 45565677666443333332 2222222 788999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCHHHHHHHHhhcCCCC----CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhcccccccccc
Q 025756 129 SGVALVLIGPGSVEQARTFSEQTKFKG----DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTV 204 (248)
Q Consensus 129 ~Gv~vV~Is~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~ 204 (248)
.|+.+|+|++++..+.+.|.++.+|.. ||++.+|+.+++++.......|......+|+ |..++.|+ +
T Consensus 83 ~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka--------~~~gv~gn-~ 153 (197)
T KOG4498|consen 83 LGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKA--------KAVGVEGN-L 153 (197)
T ss_pred hCCEEEEEeccceeecchhhcccCcceeEEEcCccceechhhhhcccccccccccHHHHHHH--------hhcccCCC-c
Confidence 999999999999999999999998886 9999999999999853222222222222222 22345554 5
Q ss_pred CCCceeeceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 205 SRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 205 ~~~~~qlgG~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
+++.+|+||.++|.+|+ +|.|.|++++++||+++++||++++
T Consensus 154 ~gd~~~~gG~~~V~~G~-~il~~h~dk~~gD~~~i~~Vl~v~~ 195 (197)
T KOG4498|consen 154 EGDGLLSGGVLVVGRGK-KILFIHVDKETGDHVPIDSVLQVVG 195 (197)
T ss_pred ccChHHhCCeEEEecCC-eEEEEEecCCCCCCcCHHHHHHHhh
Confidence 78889999999999997 9999999999999999999999986
No 2
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-26 Score=192.10 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=125.5
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHH
Q 025756 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (248)
Q Consensus 68 ~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f 147 (248)
.+++|++||+|+|.|++|+.|+|+++.++ ++||+||+..++|.|..|++++++.+++|++.|+.||+||+|+++.+++|
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 36889999999999999999999998765 99999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCC----CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCe
Q 025756 148 SEQTKFKG----DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 223 (248)
Q Consensus 148 ~~~~~fp~----Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~ 223 (248)
+++++++| |++++++++||+...... ++ ... ....+.+||||++| +
T Consensus 82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~-~g--------------------k~~--------~~~~R~TfvId~dG-~ 131 (157)
T COG1225 82 AEKHGLTFPLLSDEDGEVAEAYGVWGEKKM-YG--------------------KEY--------MGIERSTFVIDPDG-K 131 (157)
T ss_pred HHHhCCCceeeECCcHHHHHHhCccccccc-Cc--------------------ccc--------ccccceEEEECCCC-e
Confidence 99988665 999999999999854310 00 000 12467899999998 9
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 224 ISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 224 I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
|+++|+.-++.+|+ +++|++++
T Consensus 132 I~~~~~~v~~~~h~--~~vl~~l~ 153 (157)
T COG1225 132 IRYVWRKVKVKGHA--DEVLAALK 153 (157)
T ss_pred EEEEecCCCCcccH--HHHHHHHH
Confidence 99999666666655 48888775
No 3
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.94 E-value=2.1e-26 Score=185.69 Aligned_cols=145 Identities=32% Similarity=0.513 Sum_probs=118.0
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcC-
Q 025756 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK- 152 (248)
Q Consensus 74 ~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~- 152 (248)
.+|+|++.|.+|+.++++++.+++++||+|||++|||+|++++.+|++.++++++.|++||+|+.++.+.+.+|.++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 4799999999999999999887789999999999999999999999999999999999999999999988889998776
Q ss_pred -CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEEEEe
Q 025756 153 -FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHR 229 (248)
Q Consensus 153 -fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~~h~ 229 (248)
||+ |+++++|++||+.........+...++ ... ....+. ..++.+|+||+||||++| +|+|.|+
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~----~~~~~~-~~~~~~~~p~~fvid~~g-~i~~~~~ 147 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWK-------NAA----IGFRGN-DEGDGLQLPGVFVIGPDG-TILFAHV 147 (149)
T ss_pred CCeEEECCchhHHHHcCceecCcHHHHHHHHhh-------Ccc----cccccC-CCCcccccceEEEECCCC-eEEEEec
Confidence 554 999999999999876543333322111 111 111111 245568999999999997 9999998
Q ss_pred CC
Q 025756 230 DK 231 (248)
Q Consensus 230 ~~ 231 (248)
++
T Consensus 148 ~~ 149 (149)
T cd02970 148 DR 149 (149)
T ss_pred CC
Confidence 73
No 4
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.89 E-value=1.9e-22 Score=163.45 Aligned_cols=141 Identities=20% Similarity=0.243 Sum_probs=122.4
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHH
Q 025756 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (248)
Q Consensus 69 ~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~ 148 (248)
+++|+.+|+|++.|.+|+.++++++.+++++||+|+|+.||+.|..++.+|++.++++++.|+++|+|+.++.+.+++|+
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 80 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA 80 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHH
Confidence 36799999999999999999999986547889999999999999999999999999999999999999999999999999
Q ss_pred hhcC--CCC--CCC--hHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCC
Q 025756 149 EQTK--FKG--DPN--HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKS 222 (248)
Q Consensus 149 ~~~~--fp~--Dp~--~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~ 222 (248)
++++ ||+ |++ +++++.||+..... +...+.+||||++|
T Consensus 81 ~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~-----------------------------------~~~~~~~~lid~~G- 124 (149)
T cd03018 81 EENGLTFPLLSDFWPHGEVAKAYGVFDEDL-----------------------------------GVAERAVFVIDRDG- 124 (149)
T ss_pred HhcCCCceEecCCCchhHHHHHhCCccccC-----------------------------------CCccceEEEECCCC-
Confidence 9876 554 877 88998888763210 02245799999998
Q ss_pred eEEEEEeCCC--CCCCCCHHHHHHH
Q 025756 223 NISYIHRDKE--AGDDPDIQDILKA 245 (248)
Q Consensus 223 ~I~~~h~~~~--~~Dh~~i~eIL~a 245 (248)
+|+|.|.+.+ ..|.|+++++|+|
T Consensus 125 ~v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 125 IIRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred EEEEEEecCCcccccchhHHHHhhC
Confidence 9999999999 9999999998874
No 5
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.89 E-value=3.4e-22 Score=174.15 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=119.5
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHH
Q 025756 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (248)
Q Consensus 68 ~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f 147 (248)
...+|+.+|+|++.+.+|+ +.+.+.++++++||+|||+.|||.|..|+.+|++.+++|++.|++||+||.|+...+++|
T Consensus 6 ~~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw 84 (215)
T PRK13191 6 IPLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEW 84 (215)
T ss_pred cccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 3578999999999999996 667665566789999999999999999999999999999999999999999999887776
Q ss_pred Hh--------hcCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEE
Q 025756 148 SE--------QTKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVA 217 (248)
Q Consensus 148 ~~--------~~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVv 217 (248)
.+ ..+||+ |+++++.++||+..... .+..++++|||
T Consensus 85 ~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~----------------------------------~~~~~r~tfII 130 (215)
T PRK13191 85 VMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAES----------------------------------STATVRAVFIV 130 (215)
T ss_pred HhhHHHhcCCCCceEEEECCchHHHHHcCCccccc----------------------------------CCceeEEEEEE
Confidence 54 233776 99999999999853210 01246799999
Q ss_pred eCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 218 GPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 218 d~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
|++| +|++.++...+-.+ +++|||++|.
T Consensus 131 D~~G-~Ir~~~~~~~~~gr-~~~eilr~l~ 158 (215)
T PRK13191 131 DDKG-TVRLILYYPMEIGR-NIDEILRAIR 158 (215)
T ss_pred CCCC-EEEEEEecCCCCCC-CHHHHHHHHH
Confidence 9998 99999988766665 9999999875
No 6
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.88 E-value=1.9e-21 Score=162.70 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=120.8
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHH
Q 025756 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (248)
Q Consensus 69 ~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~ 148 (248)
.++|+.+|+|++.|.+|+.++++++ +++++||.|++.+|||.|+.|+++|++.++++ .|++||+|+.|+++.+++|+
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~-~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~~f~ 94 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADF-AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQKRFC 94 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHh-CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHHHHH
Confidence 4789999999999999999999997 45567777777777999999999999999998 39999999999998899999
Q ss_pred hhcCCC---C--C-CChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCC
Q 025756 149 EQTKFK---G--D-PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKS 222 (248)
Q Consensus 149 ~~~~fp---~--D-p~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~ 222 (248)
++++++ + | +++++.++||+..... + ..++..+++||||++|
T Consensus 95 ~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~----~----------------------------~~g~~~r~tfvId~~G- 141 (167)
T PRK00522 95 GAEGLENVITLSDFRDHSFGKAYGVAIAEG----P----------------------------LKGLLARAVFVLDENN- 141 (167)
T ss_pred HhCCCCCceEeecCCccHHHHHhCCeeccc----c----------------------------cCCceeeEEEEECCCC-
Confidence 988743 3 8 5669999999863210 0 0123467899999998
Q ss_pred eEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025756 223 NISYIHRDKEAGDDPDIQDILKACCS 248 (248)
Q Consensus 223 ~I~~~h~~~~~~Dh~~i~eIL~al~~ 248 (248)
+|+|.|+..+..+.++++++|++++.
T Consensus 142 ~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 142 KVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred eEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 99999998899999999999999874
No 7
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.88 E-value=8.4e-22 Score=167.78 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=117.6
Q ss_pred cccCcCCCcEEec-CCCC--eEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHH
Q 025756 70 DTKNLLDTVKVYD-VNGN--AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (248)
Q Consensus 70 ~~g~~ap~f~L~d-~~G~--~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~ 146 (248)
.+|+++|+|++.+ .+|+ .++++++ +++++||+|||+.|||.|+.|+.+|++.+++|++.|++||+|+.++.+.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 5699999999999 5787 6777786 4568999999999999999999999999999999999999999999988888
Q ss_pred HHhh------cCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEe
Q 025756 147 FSEQ------TKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 218 (248)
Q Consensus 147 f~~~------~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd 218 (248)
|++. ..||+ |++.++.++||+..... ++..+++||||
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~-----------------------------------g~~~p~tfiID 126 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEA-----------------------------------GLADRGTFVID 126 (187)
T ss_pred HHhhhhhccCcceeEEECCccHHHHHhCCcccCC-----------------------------------CceeeEEEEEC
Confidence 8764 33666 99999999999863210 02357899999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 219 PGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 219 ~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
++| +|+|.|+...+.++ ++++||++++
T Consensus 127 ~~G-~I~~~~~~~~~~~~-~~~~ll~~l~ 153 (187)
T TIGR03137 127 PEG-VIQAVEITDNGIGR-DASELLRKIK 153 (187)
T ss_pred CCC-EEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 998 99999998777666 8899999874
No 8
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.88 E-value=7.2e-22 Score=176.56 Aligned_cols=145 Identities=13% Similarity=0.160 Sum_probs=121.3
Q ss_pred CCCCccccCcCCCcEEec-CCCC--eEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 65 PSVSEDTKNLLDTVKVYD-VNGN--AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 65 ~~~~~~~g~~ap~f~L~d-~~G~--~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
..+...+|+++|+|++.+ .+|+ .++|+++.+++++||+||++.|||.|..|+.+|++.+++|++.|++||+||.|++
T Consensus 64 ~~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 64 TVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred ccccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 445668999999999988 4554 6899998777899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhh---------cCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCcee
Q 025756 142 EQARTFSEQ---------TKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQ 210 (248)
Q Consensus 142 ~~~~~f~~~---------~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~q 210 (248)
+..++|.+. ..||+ |+++++.++||+.... +..
T Consensus 144 ~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~------------------------------------g~a 187 (261)
T PTZ00137 144 FSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDE------------------------------------GFS 187 (261)
T ss_pred HHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcC------------------------------------Cce
Confidence 878888752 34776 9999999999985320 124
Q ss_pred eceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 211 QGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 211 lgG~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
++++||||++| +|+|.+.......+ .++|||+++.
T Consensus 188 ~R~tFIID~dG-~I~~~~~~~~~~gr-~v~eiLr~l~ 222 (261)
T PTZ00137 188 HRASVLVDKAG-VVKHVAVYDLGLGR-SVDETLRLFD 222 (261)
T ss_pred ecEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 67899999998 99999976544444 8999999875
No 9
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.88 E-value=9.1e-22 Score=169.70 Aligned_cols=140 Identities=12% Similarity=0.140 Sum_probs=116.9
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHH
Q 025756 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (248)
Q Consensus 69 ~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~ 148 (248)
.++|+.+|+|++.+.+| .++++++ +++++||+|||+.|||+|..|+.+|++.+++|++.|++||+|+.++.+..++|+
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 46899999999999888 7999996 456788889999999999999999999999999999999999999987766665
Q ss_pred h----hc----CCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEe
Q 025756 149 E----QT----KFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 218 (248)
Q Consensus 149 ~----~~----~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd 218 (248)
+ ++ +||+ |++++++++||+.... .| ..+|++||||
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~----------------------------~g-------~~~p~~fiId 124 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDEN----------------------------SG-------ATVRGVFIID 124 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCcccc----------------------------CC-------cEEeEEEEEC
Confidence 3 33 3676 9999999999985321 01 2367999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 219 PGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 219 ~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
++| +|+|.+.......+ +++|+|+++.
T Consensus 125 ~~G-~I~~~~~~~~~~gr-~~~ellr~l~ 151 (202)
T PRK13190 125 PNQ-IVRWMIYYPAETGR-NIDEIIRITK 151 (202)
T ss_pred CCC-EEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 998 99999987665554 8999998875
No 10
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.88 E-value=1.3e-21 Score=168.74 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=117.0
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhh
Q 025756 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (248)
Q Consensus 71 ~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~ 150 (248)
+|+.+|+|++.+.+| .++++++.+++++||+||++.|||.|+.++.+|++.+++|++.|++||+|+.++.+.+++|.+.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~ 79 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhh
Confidence 589999999999988 5899998655689999999999999999999999999999999999999999999887777753
Q ss_pred ------c--CCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCC
Q 025756 151 ------T--KFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 220 (248)
Q Consensus 151 ------~--~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~g 220 (248)
. +||+ |++++++++||+..... +.....+++||||++
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~---------------------------------~~~~~~r~~fiID~~ 126 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDA---------------------------------GSTLTVRAVFIIDPD 126 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCccccC---------------------------------CCCceeeEEEEECCC
Confidence 3 3666 99999999999863210 001246789999999
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 221 KSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 221 g~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
| +|++.|+......+ +++++|+++.
T Consensus 127 G-~I~~~~~~~~~~gr-~~~ell~~l~ 151 (203)
T cd03016 127 K-KIRLILYYPATTGR-NFDEILRVVD 151 (203)
T ss_pred C-eEEEEEecCCCCCC-CHHHHHHHHH
Confidence 8 99999987554443 6899988875
No 11
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.88 E-value=1.4e-21 Score=170.40 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=117.3
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHh
Q 025756 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~ 149 (248)
.+|+.+|+|++.+.+|+.+.++++ +++++||+|||+.|||.|+.|+.+|++.+++|++.|++||+||.++.+..++|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 689999999999999987777775 4568899999999999999999999999999999999999999999987777654
Q ss_pred --------hcCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeC
Q 025756 150 --------QTKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 219 (248)
Q Consensus 150 --------~~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~ 219 (248)
..+||+ |+++++.++||+..... +....+++||||+
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~----------------------------------~~~~~R~tfIID~ 127 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK----------------------------------GTNTVRAVFIVDD 127 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCC----------------------------------CCceeeEEEEECC
Confidence 234776 99999999999853210 0023678999999
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025756 220 GKSNISYIHRDKEAGDDPDIQDILKACCS 248 (248)
Q Consensus 220 gg~~I~~~h~~~~~~Dh~~i~eIL~al~~ 248 (248)
+| +|++.++.....+ ..++|||+++.+
T Consensus 128 dG-~Ir~~~~~p~~~g-r~~~eilr~l~~ 154 (215)
T PRK13599 128 KG-TIRLIMYYPQEVG-RNVDEILRALKA 154 (215)
T ss_pred CC-EEEEEEEcCCCCC-CCHHHHHHHHHH
Confidence 98 9999997654444 388999998753
No 12
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.88 E-value=1.4e-21 Score=157.88 Aligned_cols=137 Identities=13% Similarity=0.199 Sum_probs=117.4
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHh
Q 025756 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~ 149 (248)
++|+.+|+|++.|.+|+.++|+++. ++++||.|++..|||.|+.++..|.+.++++ .|+.+|+|+.++.+.+++|.+
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~~-gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~~ 77 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADFA-GKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWCG 77 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHhC-CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHHH
Confidence 4699999999999999999999974 5688888888888999999999999999997 399999999999988999998
Q ss_pred hcC---CCC--CCC-hHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCe
Q 025756 150 QTK---FKG--DPN-HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 223 (248)
Q Consensus 150 ~~~---fp~--Dp~-~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~ 223 (248)
+++ |++ |++ +++.++||+..... +..++++||||++| +
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~-----------------------------------~~~~~~~~iid~~G-~ 121 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKDL-----------------------------------GLLARAVFVIDENG-K 121 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeeccC-----------------------------------CccceEEEEEcCCC-e
Confidence 765 555 886 89999998853210 02346899999998 9
Q ss_pred EEEEEeCCCCCCCCCHHHHHHH
Q 025756 224 ISYIHRDKEAGDDPDIQDILKA 245 (248)
Q Consensus 224 I~~~h~~~~~~Dh~~i~eIL~a 245 (248)
|+|.|++....+.|+++++|++
T Consensus 122 I~~~~~~~~~~~~~~~~~~~~~ 143 (143)
T cd03014 122 VIYVELVPEITDEPDYEAALAA 143 (143)
T ss_pred EEEEEECCCcccCCCHHHHhhC
Confidence 9999999999999999999863
No 13
>PRK13189 peroxiredoxin; Provisional
Probab=99.87 E-value=2.4e-21 Score=169.59 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=118.8
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHH
Q 025756 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (248)
Q Consensus 69 ~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~ 148 (248)
..+|+.+|+|++.+.+|+ +.+.+.++++++||+|||+.|||.|..|+.+|++.+++|++.|++||+||.++...+++|.
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 468999999999999985 7888866667899999999999999999999999999999999999999999998877777
Q ss_pred hh--------cCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEe
Q 025756 149 EQ--------TKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 218 (248)
Q Consensus 149 ~~--------~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd 218 (248)
+. .+||+ |+++++.++||+..... ++..++++||||
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~----------------------------------~~~~~r~tfIID 133 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGK----------------------------------GTNTVRAVFIID 133 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCcccc----------------------------------CCCceeEEEEEC
Confidence 53 24676 99999999999863210 001467999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 219 PGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 219 ~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
++| +|++.++...+..+ .++|+|+++.
T Consensus 134 ~~G-~Ir~~~~~~~~~gr-~~~eilr~l~ 160 (222)
T PRK13189 134 PKG-IIRAILYYPQEVGR-NMDEILRLVK 160 (222)
T ss_pred CCC-eEEEEEecCCCCCC-CHHHHHHHHH
Confidence 998 99999987665555 6889988875
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.87 E-value=2.5e-21 Score=151.65 Aligned_cols=120 Identities=19% Similarity=0.302 Sum_probs=107.4
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhh
Q 025756 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (248)
Q Consensus 71 ~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~ 150 (248)
+|+++|+|++.|.+|+.++|+++ +++++||+|++..|||.|+.++.+|++.++++++.|+++|+|+.++.+.+++|.+.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 69999999999999999999998 66788999988889999999999999999999999999999999999999999997
Q ss_pred cCC--CC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEE
Q 025756 151 TKF--KG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISY 226 (248)
Q Consensus 151 ~~f--p~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~ 226 (248)
.++ |+ |++.++.+.||+.... ...+.|++||||++| +|+|
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~~~-----------------------------------~~~~~p~~~lid~~g-~I~~ 123 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIEDEK-----------------------------------DTLALPAVFLIDPDG-KIRY 123 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEETT-----------------------------------TSEESEEEEEEETTS-BEEE
T ss_pred hccccccccCcchHHHHHcCCcccc-----------------------------------CCceEeEEEEECCCC-EEEe
Confidence 764 44 9999999999987442 014678999999998 9998
Q ss_pred E
Q 025756 227 I 227 (248)
Q Consensus 227 ~ 227 (248)
.
T Consensus 124 ~ 124 (124)
T PF00578_consen 124 A 124 (124)
T ss_dssp E
T ss_pred C
Confidence 5
No 15
>PRK15000 peroxidase; Provisional
Probab=99.87 E-value=4.2e-21 Score=165.49 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=116.7
Q ss_pred cccCcCCCcEEecCC--CCe---EeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHH
Q 025756 70 DTKNLLDTVKVYDVN--GNA---IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~--G~~---v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~ 144 (248)
.+|+++|+|++.+.. |+. ++|+++++++++||+||++.|||.|..|+.+|++.+++|++.|++||+||.++.+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 479999999999864 453 455565567789999999999999999999999999999999999999999999877
Q ss_pred HHHHhh---------cCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeece
Q 025756 145 RTFSEQ---------TKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 213 (248)
Q Consensus 145 ~~f~~~---------~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG 213 (248)
++|.+. .+||+ |+++++.++||+.... .+..+++
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~-----------------------------------~g~~~r~ 127 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPD-----------------------------------EGVALRG 127 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCC-----------------------------------CCcEEeE
Confidence 777642 24777 9999999999985321 0134689
Q ss_pred EEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 214 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 214 ~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
+||||++| +|++.+.+..+-++ +++|+|++++
T Consensus 128 tfiID~~G-~I~~~~~~~~~~gr-~~~eilr~l~ 159 (200)
T PRK15000 128 SFLIDANG-IVRHQVVNDLPLGR-NIDEMLRMVD 159 (200)
T ss_pred EEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHH
Confidence 99999998 99999998766665 8999999875
No 16
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.86 E-value=6.3e-21 Score=159.85 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=116.4
Q ss_pred ccCcCCCcEEecCCC----CeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHH
Q 025756 71 TKNLLDTVKVYDVNG----NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (248)
Q Consensus 71 ~g~~ap~f~L~d~~G----~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~ 146 (248)
+|+++|+|++.+.+| +.++|+++. ++++||+|+++.||+.|..++.+|++.+++|++.|+.||+|+.++.+..++
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~-Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYK-GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhC-CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 589999999999887 799999974 468888888899999999999999999999999999999999999877777
Q ss_pred HHhh---------cCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEE
Q 025756 147 FSEQ---------TKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 215 (248)
Q Consensus 147 f~~~---------~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~f 215 (248)
|.+. .+|++ |++.++++.||+..... ++.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~-----------------------------------~~~~p~~~ 124 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEE-----------------------------------GVALRGTF 124 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccC-----------------------------------CceeeEEE
Confidence 7664 23665 99999999999864310 12356899
Q ss_pred EEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 216 VAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 216 Vvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
|||++| +|+|.|++..+.+ .+.++||+.|+
T Consensus 125 lID~~G-~I~~~~~~~~~~~-~~~~~il~~l~ 154 (173)
T cd03015 125 IIDPEG-IIRHITVNDLPVG-RSVDETLRVLD 154 (173)
T ss_pred EECCCC-eEEEEEecCCCCC-CCHHHHHHHHH
Confidence 999998 9999999876654 47889998875
No 17
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.86 E-value=4.4e-21 Score=158.96 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=112.9
Q ss_pred ccCcCCCcEEecCC---CCeEeCCCccCCCeEEEEEEcCCCChhhHHH-HHHHHhcHHHHHHCCC-EEEEEeCCCHHHHH
Q 025756 71 TKNLLDTVKVYDVN---GNAIPISDLWKDRKAVVAFARHFGCVLCRKR-ADYLAAKKDVMDASGV-ALVLIGPGSVEQAR 145 (248)
Q Consensus 71 ~g~~ap~f~L~d~~---G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~-l~~L~~~~~~l~~~Gv-~vV~Is~~~~~~~~ 145 (248)
+|+++|+|++.+.+ |+.++|+++++++++||+|||+.|||.|..| +++|++.+++|++.|+ .|++||.++++.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 58999999999986 9999999976667999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHhhcC----CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeC
Q 025756 146 TFSEQTK----FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 219 (248)
Q Consensus 146 ~f~~~~~----fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~ 219 (248)
+|+++.+ ||+ |+++++.++||+...... .+ .+.+..+++||||
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~---------------~~---------------~~~~~~R~~fiId- 129 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSA---------------AG---------------GGIRSKRYALIVD- 129 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCccccc---------------cC---------------CcceeeeEEEEEC-
Confidence 9999776 455 999999999999854210 00 0113467899999
Q ss_pred CCCeEEEEEeCCCCCC
Q 025756 220 GKSNISYIHRDKEAGD 235 (248)
Q Consensus 220 gg~~I~~~h~~~~~~D 235 (248)
+| +|+|.++...+.+
T Consensus 130 ~g-~I~~~~~~~~~~~ 144 (155)
T cd03013 130 DG-KVKYLFVEEDPGD 144 (155)
T ss_pred CC-EEEEEEEecCCCC
Confidence 56 9999999877643
No 18
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.85 E-value=1.3e-20 Score=160.95 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=116.6
Q ss_pred cccCcCCCcEEecC-CC--CeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHH
Q 025756 70 DTKNLLDTVKVYDV-NG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (248)
Q Consensus 70 ~~g~~ap~f~L~d~-~G--~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~ 146 (248)
.+|.++|+|++... +| +.++|+++. ++++||+||++.|||.|..|+.+|++.+++|++.|++||+||.|+.+.+++
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~-Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTE-GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhC-CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 68999999998763 34 567778865 468999999999999999999999999999999999999999999999999
Q ss_pred HHhh------cCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEe
Q 025756 147 FSEQ------TKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 218 (248)
Q Consensus 147 f~~~------~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd 218 (248)
|++. .+||+ |+++++.++||+..... ++..+++||||
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~-----------------------------------g~~~r~tfIID 126 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDE-----------------------------------GLADRATFVVD 126 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCCcccC-----------------------------------CceeeEEEEEC
Confidence 9864 24666 99999999999853210 02346899999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 219 PGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 219 ~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
++| +|+|.|+.....++ +++|+|++|.
T Consensus 127 ~~G-~I~~~~~~~~~~~~-~~~eil~~l~ 153 (187)
T PRK10382 127 PQG-IIQAIEVTAEGIGR-DASDLLRKIK 153 (187)
T ss_pred CCC-EEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 998 99999998655554 8999999875
No 19
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.85 E-value=2.7e-20 Score=152.49 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=120.7
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHH
Q 025756 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (248)
Q Consensus 68 ~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f 147 (248)
..+.|+.+|+|++.|.+|+.++++++ +++++||.|++..|||.|+.++..|.+.++++++.|+++|+|+.++.+.+++|
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~ 81 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRF 81 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 45789999999999999999999996 45677777777889999999999999999999999999999999999999999
Q ss_pred HhhcC--CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCe
Q 025756 148 SEQTK--FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 223 (248)
Q Consensus 148 ~~~~~--fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~ 223 (248)
+++++ ||+ |++..++++||+...... . + .... ...+.+||||++| +
T Consensus 82 ~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~--------------~-~------~~~~--------~~~~~~~lid~~G-~ 131 (154)
T PRK09437 82 AEKELLNFTLLSDEDHQVAEQFGVWGEKKF--------------M-G------KTYD--------GIHRISFLIDADG-K 131 (154)
T ss_pred HHHhCCCCeEEECCCchHHHHhCCCccccc--------------c-c------cccc--------CcceEEEEECCCC-E
Confidence 99877 555 999999999998532100 0 0 0000 1235789999998 9
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 224 ISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 224 I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
|++.|.+..+.++ .+++|++++
T Consensus 132 i~~~~~g~~~~~~--~~~~~~~~~ 153 (154)
T PRK09437 132 IEHVFDKFKTSNH--HDVVLDYLK 153 (154)
T ss_pred EEEEEcCCCcchh--HHHHHHHHh
Confidence 9999998777665 789999886
No 20
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.85 E-value=3.3e-20 Score=148.40 Aligned_cols=134 Identities=14% Similarity=0.232 Sum_probs=115.1
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhc-C
Q 025756 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-K 152 (248)
Q Consensus 74 ~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~-~ 152 (248)
++|+|++.|.+|+.++++++ +++++||+|++..||+.|..++.+|.+.+++|++.|+.+|+|+.++.+.+++|++++ +
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~ 79 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGG 79 (140)
T ss_pred CCCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccC
Confidence 47999999999999999998 467888888889999999999999999999999999999999999999999999977 5
Q ss_pred --CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEEEE
Q 025756 153 --FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIH 228 (248)
Q Consensus 153 --fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~~h 228 (248)
|++ |++..+++.||+..... .++....+.+||||++| +|+|.|
T Consensus 80 ~~~~~l~D~~~~~~~~~g~~~~~~--------------------------------~~~~~~~p~~~lid~~g-~i~~~~ 126 (140)
T cd02971 80 LNFPLLSDPDGEFAKAYGVLIEKS--------------------------------AGGGLAARATFIIDPDG-KIRYVE 126 (140)
T ss_pred CCceEEECCChHHHHHcCCccccc--------------------------------cccCceeEEEEEECCCC-cEEEEE
Confidence 555 99999999999875421 01124567899999987 999999
Q ss_pred eCCCCCCCCCHHHH
Q 025756 229 RDKEAGDDPDIQDI 242 (248)
Q Consensus 229 ~~~~~~Dh~~i~eI 242 (248)
.+.++ ++...+.+
T Consensus 127 ~~~~~-~~~~~~~~ 139 (140)
T cd02971 127 VEPLP-TGRNAEEL 139 (140)
T ss_pred ecCCC-CCcChHhh
Confidence 99988 77666655
No 21
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.85 E-value=2.6e-20 Score=150.76 Aligned_cols=139 Identities=19% Similarity=0.313 Sum_probs=111.4
Q ss_pred cccCcCCCcEEec--CCCCeEeCCCccCCCeEEEEEEcCC-CChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHH
Q 025756 70 DTKNLLDTVKVYD--VNGNAIPISDLWKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (248)
Q Consensus 70 ~~g~~ap~f~L~d--~~G~~v~l~~l~~~~~vvlvF~R~~-~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~ 146 (248)
|+|+++|+|++.+ .+|+.+++++ +++++ +|++|+.. |||.|+.++..|.+.+++++..|+.+|+|+.++...+++
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~-~~gk~-~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSD-FKGKP-VVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGG-GTTSE-EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHH-hCCCe-EEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 6899999999966 9999999999 44555 45555555 999999999999999999999999999999998888999
Q ss_pred HHhhcCCCC----CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCC
Q 025756 147 FSEQTKFKG----DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKS 222 (248)
Q Consensus 147 f~~~~~fp~----Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~ 222 (248)
|++++++++ |++.++.++||+..... . +.++.+|..||||++|
T Consensus 79 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-----~---------------------------~~~~~~P~~~lId~~G- 125 (146)
T PF08534_consen 79 FLKKYGINFPVLSDPDGALAKALGVTIMED-----P---------------------------GNGFGIPTTFLIDKDG- 125 (146)
T ss_dssp HHHHTTTTSEEEEETTSHHHHHTTCEEECC-----T---------------------------TTTSSSSEEEEEETTS-
T ss_pred HHHhhCCCceEEechHHHHHHHhCCccccc-----c---------------------------ccCCeecEEEEEECCC-
Confidence 999876444 99999999999763321 0 0114577899999998
Q ss_pred eEEEEEeCCCCCCCCCHHHHH
Q 025756 223 NISYIHRDKEAGDDPDIQDIL 243 (248)
Q Consensus 223 ~I~~~h~~~~~~Dh~~i~eIL 243 (248)
+|+|.|.+.+..+.+++++||
T Consensus 126 ~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 126 KVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp BEEEEEESSBTTSHHSHHHHH
T ss_pred EEEEEEeCCCCCCCCChhhcC
Confidence 999999998883366777665
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.84 E-value=5.2e-20 Score=147.49 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=112.2
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcC
Q 025756 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (248)
Q Consensus 73 ~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~ 152 (248)
+++|+|++.|.+|+.++++++. ++++||.|++..|||.|..++.+|++.++++++.|+++|+|+.++.+.+++|+++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLR-GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhC-CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 5789999999999999999975 567888888889999999999999999999999999999999999999999999876
Q ss_pred --CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEEEE
Q 025756 153 --FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIH 228 (248)
Q Consensus 153 --fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~~h 228 (248)
||+ |++++++++||+..... . +.....|.+||||++| +|++.|
T Consensus 80 ~~~~~l~D~~~~~~~~~gv~~~~~---------------------------~-----~~~~~~p~~~lid~~G-~v~~~~ 126 (140)
T cd03017 80 LPFPLLSDPDGKLAKAYGVWGEKK---------------------------K-----KYMGIERSTFLIDPDG-KIVKVW 126 (140)
T ss_pred CCceEEECCccHHHHHhCCccccc---------------------------c-----ccCCcceeEEEECCCC-EEEEEE
Confidence 555 99999999999874321 0 0112356899999997 999999
Q ss_pred eCCCCCCCCCHHHHH
Q 025756 229 RDKEAGDDPDIQDIL 243 (248)
Q Consensus 229 ~~~~~~Dh~~i~eIL 243 (248)
.+.. ..-+++++|
T Consensus 127 ~g~~--~~~~~~~~~ 139 (140)
T cd03017 127 RKVK--PKGHAEEVL 139 (140)
T ss_pred ecCC--ccchHHHHh
Confidence 8765 444555665
No 23
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.83 E-value=2e-19 Score=154.47 Aligned_cols=141 Identities=9% Similarity=0.063 Sum_probs=116.7
Q ss_pred ccccCcCCCcEEec----CCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHH
Q 025756 69 EDTKNLLDTVKVYD----VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (248)
Q Consensus 69 ~~~g~~ap~f~L~d----~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~ 144 (248)
..+|+++|+|++.+ .+|+.++|+++. ++++||+|++..||+.|..++.+|++.+++|++.|++||+|+.++.+..
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~-Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYK-GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHC-CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 57899999999665 567899999975 5689999999999999999999999999999999999999999998766
Q ss_pred HHHHh---------hcCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeece
Q 025756 145 RTFSE---------QTKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 213 (248)
Q Consensus 145 ~~f~~---------~~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG 213 (248)
.+|.. ..+||+ |+++++.++||+.... ++...++
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~-----------------------------------~g~~~r~ 129 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEE-----------------------------------QGVAYRG 129 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccC-----------------------------------CCceEEE
Confidence 66542 135777 9999999999984221 0123579
Q ss_pred EEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 214 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 214 ~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
+||||++| +|++.|+...+ ...+++|+|+++.
T Consensus 130 ~fiID~~G-~i~~~~~~~~~-~~r~~~e~l~~l~ 161 (199)
T PTZ00253 130 LFIIDPKG-MLRQITVNDMP-VGRNVEEVLRLLE 161 (199)
T ss_pred EEEECCCC-EEEEEEecCCC-CCCCHHHHHHHHH
Confidence 99999998 99999998555 5568899998875
No 24
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.7e-19 Score=147.57 Aligned_cols=173 Identities=15% Similarity=0.207 Sum_probs=136.0
Q ss_pred eccCCCCCCCccccCCcccccCCCCCcee-eecccCCCCCCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcC
Q 025756 28 ILPNQSPLWRPRHWNKTLKLSPRRPSHVI-ASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARH 106 (248)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~ 106 (248)
..|.-+..-|||.+-++ |++ -|+.| +..-..+.|+.+|||+|.|+||..|+|..+.+..++|++||+.
T Consensus 32 ~vpkK~~ks~~~~~~~~---------~~~~~s~~S--sds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~ 100 (211)
T KOG0855|consen 32 SVPKKSSKSNFFGSTLT---------HSSYISPVS--SDSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPA 100 (211)
T ss_pred cccccccccCccccccc---------ceeeecccc--ccceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEecc
Confidence 34555666677755443 222 33333 2333789999999999999999999999998888999999999
Q ss_pred CCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC----CCChHHHHHcCCccccccccCchhhHH
Q 025756 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG----DPNHSSYEALSFVSGVLVTFTPKAGLK 182 (248)
Q Consensus 107 ~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~~~~~~~~P~a~~~ 182 (248)
+-.|.|.++++.+++.|++|+++|++|++++.|+....++|+.+.+||| ||.+++.+.||......
T Consensus 101 asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~p~---------- 170 (211)
T KOG0855|consen 101 ASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKDPF---------- 170 (211)
T ss_pred CCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCCCCCC----------
Confidence 9999999999999999999999999999999999999999999999998 99999999999886532
Q ss_pred HHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 183 IIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 183 ~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
+++..+..||++.||.+..+ ..-...-...+++-++.+.
T Consensus 171 ------------------------gg~~~Rsh~if~kg~~k~~i--k~~~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 171 ------------------------GGLPGRSHYIFDKGGVKQLI--KNNQISPEVSVDEALKFLK 209 (211)
T ss_pred ------------------------CCcccceEEEEecCCeEEEE--EecccCccccHHHHHHHHh
Confidence 11334578999987633333 3334555566677776653
No 25
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.79 E-value=9.1e-19 Score=137.46 Aligned_cols=111 Identities=32% Similarity=0.508 Sum_probs=86.1
Q ss_pred HHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC----CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhh
Q 025756 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG----DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQ 193 (248)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~ 193 (248)
+|++..++|+++|+++|+|++++.+.+++|++.++||+ ||++++|++||+.+.....+.+..++..+.... +.
T Consensus 1 ~L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (115)
T PF13911_consen 1 QLSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIV---QS 77 (115)
T ss_pred ChhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHH---HH
Confidence 47788999999999999999999988999999888877 999999999999987766665554433332222 22
Q ss_pred hccccccccccCCCceeeceEEEEeCCCCeEEEEEeCCC
Q 025756 194 DWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKE 232 (248)
Q Consensus 194 ~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~~h~~~~ 232 (248)
.+..++.++...++.+|+||+||||++| +|+|+|++++
T Consensus 78 ~~~~~~~~~~~~g~~~q~GG~fv~d~~g-~v~~~hr~~~ 115 (115)
T PF13911_consen 78 AKNGGIPGNKDQGDGWQLGGTFVFDPGG-KVLYEHRDRH 115 (115)
T ss_pred HHHcCCCCcccCCCceecCeEEEEcCCC-eEEEEEecCC
Confidence 2333444432156679999999999987 9999999975
No 26
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2e-18 Score=146.68 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=121.2
Q ss_pred ccccCcCCCcEEecC-CCC---eEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHH
Q 025756 69 EDTKNLLDTVKVYDV-NGN---AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (248)
Q Consensus 69 ~~~g~~ap~f~L~d~-~G~---~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~ 144 (248)
..+|+++|+|++... .|+ .|+|.++.+ +++||+|++..+.+.|-.|+.++++.|++|++.|++||+||.|+...+
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 468999999999988 775 999999887 899999999999999999999999999999999999999999999999
Q ss_pred HHHHhh---------cCCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeece
Q 025756 145 RTFSEQ---------TKFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 213 (248)
Q Consensus 145 ~~f~~~---------~~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG 213 (248)
.+|.+. .+||+ |+++++.++||+..... +..++|
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~-----------------------------------g~a~R~ 126 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE-----------------------------------GLALRG 126 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC-----------------------------------CcceeE
Confidence 999975 33777 99999999999974321 124679
Q ss_pred EEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 214 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 214 ~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
+|||||+| .|++..+...+-.| .++|+|+++.
T Consensus 127 ~FIIDp~g-~ir~~~v~~~~iGR-n~dEilR~id 158 (194)
T COG0450 127 TFIIDPDG-VIRHILVNPLTIGR-NVDEILRVID 158 (194)
T ss_pred EEEECCCC-eEEEEEEecCCCCc-CHHHHHHHHH
Confidence 99999998 99999988665333 5678877664
No 27
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.75 E-value=2.1e-17 Score=140.95 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=100.0
Q ss_pred CCCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHH
Q 025756 65 PSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (248)
Q Consensus 65 ~~~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~ 144 (248)
.....++|+.+|+|+++|.+|+.+++++...+++.+|++|+..|||.|++++..+.+.+. +.|+++++|+.++.+.+
T Consensus 42 ~~~~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~---~~~~~vv~Is~~~~~~~ 118 (189)
T TIGR02661 42 TDHGPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIAR---AEETDVVMISDGTPAEH 118 (189)
T ss_pred cccCCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHH---hcCCcEEEEeCCCHHHH
Confidence 333468999999999999999999997532234456666689999999999999998764 35899999999999999
Q ss_pred HHHHhhcCCCC---CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCC
Q 025756 145 RTFSEQTKFKG---DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 221 (248)
Q Consensus 145 ~~f~~~~~fp~---Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg 221 (248)
++|++++++++ +.+.++.++||+ ..+|..||||++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~y~v-----------------------------------------~~~P~~~lID~~G 157 (189)
T TIGR02661 119 RRFLKDHELGGERYVVSAEIGMAFQV-----------------------------------------GKIPYGVLLDQDG 157 (189)
T ss_pred HHHHHhcCCCcceeechhHHHHhccC-----------------------------------------CccceEEEECCCC
Confidence 99999887553 222222222221 1246789999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025756 222 SNISYIHRDKEAGDDPDIQDILKACCS 248 (248)
Q Consensus 222 ~~I~~~h~~~~~~Dh~~i~eIL~al~~ 248 (248)
+|++.+. ..-...++++|+++++
T Consensus 158 -~I~~~g~---~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 158 -KIRAKGL---TNTREHLESLLEADRE 180 (189)
T ss_pred -eEEEccC---CCCHHHHHHHHHHHHc
Confidence 9998642 2333458899988764
No 28
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.73 E-value=7.3e-17 Score=134.57 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=107.7
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC--------HHH
Q 025756 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--------VEQ 143 (248)
Q Consensus 72 g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~--------~~~ 143 (248)
|+.+|+|++.|.+|+.++++++.+ ++++|++|+..|||.|..++.+|.++++++++.++++|+|+.++ .+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~-~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFAD-GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhC-CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence 678999999999999999999644 45677777799999999999999999999999999999999864 678
Q ss_pred HHHHHhhcC--CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeC
Q 025756 144 ARTFSEQTK--FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 219 (248)
Q Consensus 144 ~~~f~~~~~--fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~ 219 (248)
+++|.++++ |++ |+++.+.+.||+.. .|..||||+
T Consensus 80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-----------------------------------------~P~~~lid~ 118 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGAAC-----------------------------------------TPDFFLFDP 118 (171)
T ss_pred HHHHHHHCCCCceEEECCchHHHHHcCCCc-----------------------------------------CCcEEEECC
Confidence 899998776 444 98888887777631 135899999
Q ss_pred CCCeEEEEEeCCCC----CCCCCHHHHHHHhh
Q 025756 220 GKSNISYIHRDKEA----GDDPDIQDILKACC 247 (248)
Q Consensus 220 gg~~I~~~h~~~~~----~Dh~~i~eIL~al~ 247 (248)
+| +|+|.+..... ..++..+++.++++
T Consensus 119 ~G-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 149 (171)
T cd02969 119 DG-KLVYRGRIDDSRPGNDPPVTGRDLRAALD 149 (171)
T ss_pred CC-eEEEeecccCCcccccccccHHHHHHHHH
Confidence 98 99988754322 35677777777664
No 29
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.71 E-value=2.2e-16 Score=139.52 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=73.7
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC--------CCH
Q 025756 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~--------~~~ 141 (248)
..|+.+|+|++.|.+|+.++++++. +++||++|+..||+.|+.++.+|+++++++++.|++||+|++ ++.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~k--GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKFK--GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhC--CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 5789999999999999999999973 467888888999999999999999999999999999999996 456
Q ss_pred HHHHHHH-hhcC--CCC
Q 025756 142 EQARTFS-EQTK--FKG 155 (248)
Q Consensus 142 ~~~~~f~-~~~~--fp~ 155 (248)
+.+++|+ ++++ ||+
T Consensus 152 ~ei~~f~~~~~g~~fPv 168 (236)
T PLN02399 152 PEIKQFACTRFKAEFPI 168 (236)
T ss_pred HHHHHHHHHhcCCCCcc
Confidence 7888997 5555 665
No 30
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.69 E-value=2.7e-16 Score=135.44 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=75.1
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC--------CCH
Q 025756 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~--------~~~ 141 (248)
+.+..+|+|++.|.+|+.++|+++. +++||++||..|||+|++++..|.+.++++++.|++||+|++ ++.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~k--Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLK--NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhC--CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 5567899999999999999999973 468899999999999999999999999999999999999986 567
Q ss_pred HHHHHHHhhcC--CCC
Q 025756 142 EQARTFSEQTK--FKG 155 (248)
Q Consensus 142 ~~~~~f~~~~~--fp~ 155 (248)
+.+++|+++++ ||+
T Consensus 92 e~~~~f~~~~~~~fpv 107 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNF 107 (199)
T ss_pred HHHHHHHHHcCCCcee
Confidence 88999999876 554
No 31
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.69 E-value=7.1e-16 Score=127.81 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=106.6
Q ss_pred CCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH-HHH
Q 025756 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQA 144 (248)
Q Consensus 66 ~~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~-~~~ 144 (248)
....++|+.+|+|++.+.+|+.++++++ +++ .++++|+..||+.|+.+...|.+..+++.+.++++|+|+.++. +.+
T Consensus 32 ~~~~~~g~~~p~~~~~~~~g~~~~l~~~-~~k-~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~ 109 (173)
T PRK03147 32 KEKVQVGKEAPNFVLTDLEGKKIELKDL-KGK-GVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAV 109 (173)
T ss_pred ccccCCCCCCCCcEeecCCCCEEeHHHc-CCC-EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHH
Confidence 3457899999999999999999999996 344 4555666999999999999999999999999999999998765 578
Q ss_pred HHHHhhcCCCC----CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCC
Q 025756 145 RTFSEQTKFKG----DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 220 (248)
Q Consensus 145 ~~f~~~~~fp~----Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~g 220 (248)
++|.+++++++ |++..+.+.||+. ..|..||+|++
T Consensus 110 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~-----------------------------------------~~P~~~lid~~ 148 (173)
T PRK03147 110 KNFVNRYGLTFPVAIDKGRQVIDAYGVG-----------------------------------------PLPTTFLIDKD 148 (173)
T ss_pred HHHHHHhCCCceEEECCcchHHHHcCCC-----------------------------------------CcCeEEEECCC
Confidence 88998776444 8877777777653 13468999999
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 221 KSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 221 g~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
| +|.+.+.+.... -++.+.|+.++
T Consensus 149 g-~i~~~~~g~~~~--~~l~~~l~~~~ 172 (173)
T PRK03147 149 G-KVVKVITGEMTE--EQLEEYLEKIK 172 (173)
T ss_pred C-cEEEEEeCCCCH--HHHHHHHHHhc
Confidence 8 999888764432 23445555543
No 32
>PLN02412 probable glutathione peroxidase
Probab=99.67 E-value=6.7e-16 Score=129.26 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=69.0
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC--------CHHH
Q 025756 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQ 143 (248)
Q Consensus 72 g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~--------~~~~ 143 (248)
-+.+|+|++.|.+|+.++|+++. +++||++|+..||+.|++++.+|++.++++++.|+.||+|+.+ +.+.
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~~--gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQYK--GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHhC--CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHH
Confidence 37799999999999999999973 4688888889999999999999999999999999999999963 4445
Q ss_pred H-HHHHhhcC--CCC
Q 025756 144 A-RTFSEQTK--FKG 155 (248)
Q Consensus 144 ~-~~f~~~~~--fp~ 155 (248)
+ +.|+++++ ||+
T Consensus 84 ~~~~~~~~~~~~fpv 98 (167)
T PLN02412 84 IQQTVCTRFKAEFPI 98 (167)
T ss_pred HHHHHHHccCCCCce
Confidence 4 44556665 554
No 33
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.66 E-value=2.6e-16 Score=129.22 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=69.0
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC--------CCHHHHHH
Q 025756 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (248)
Q Consensus 75 ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~--------~~~~~~~~ 146 (248)
+|+|++.|.+|+.++++++. +++||++||.+||| |+.++.+|++.++++++.|+.+|+|+. ++.+.+++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~--Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYK--GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhC--CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence 68999999999999999974 46788888999999 999999999999999999999999986 44678999
Q ss_pred HHhh-cC--CCC
Q 025756 147 FSEQ-TK--FKG 155 (248)
Q Consensus 147 f~~~-~~--fp~ 155 (248)
|+++ ++ ||+
T Consensus 79 f~~~~~~~~fp~ 90 (152)
T cd00340 79 FCETNYGVTFPM 90 (152)
T ss_pred HHHHhcCCCcee
Confidence 9976 55 665
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.66 E-value=1.8e-15 Score=128.43 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=90.6
Q ss_pred CccccCcCCCcEEecCCC--CeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC-CHHHH
Q 025756 68 SEDTKNLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQA 144 (248)
Q Consensus 68 ~~~~g~~ap~f~L~d~~G--~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~-~~~~~ 144 (248)
...+|+.+|+|++.|.+| +.+++.++.+ ++++|++||..||++|++++..|.+. .+.|++||+|+.+ +.+.+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~-gk~vvv~FwatwC~~C~~e~p~l~~l----~~~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQ-GKPVLLNVWATWCPTCRAEHQYLNQL----SAQGIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcC-CCEEEEEEECCCCHHHHHHHHHHHHH----HHcCCEEEEEECCCCHHHH
Confidence 457899999999999984 6777666544 45677778899999999999999765 4469999999964 56778
Q ss_pred HHHHhhcC--CCC---CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeC
Q 025756 145 RTFSEQTK--FKG---DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 219 (248)
Q Consensus 145 ~~f~~~~~--fp~---Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~ 219 (248)
++|.++++ ||. |++..+.++||+. -.|.+||||+
T Consensus 113 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-----------------------------------------~~P~t~vid~ 151 (185)
T PRK15412 113 ISWLKELGNPYALSLFDGDGMLGLDLGVY-----------------------------------------GAPETFLIDG 151 (185)
T ss_pred HHHHHHcCCCCceEEEcCCccHHHhcCCC-----------------------------------------cCCeEEEECC
Confidence 99999876 442 7666555554432 1357999999
Q ss_pred CCCeEEEEEeCCC
Q 025756 220 GKSNISYIHRDKE 232 (248)
Q Consensus 220 gg~~I~~~h~~~~ 232 (248)
+| +|+|.|.+..
T Consensus 152 ~G-~i~~~~~G~~ 163 (185)
T PRK15412 152 NG-IIRYRHAGDL 163 (185)
T ss_pred Cc-eEEEEEecCC
Confidence 98 9999998744
No 35
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.65 E-value=1.8e-15 Score=128.36 Aligned_cols=83 Identities=12% Similarity=0.230 Sum_probs=70.5
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC--------CHHH
Q 025756 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQ 143 (248)
Q Consensus 72 g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~--------~~~~ 143 (248)
++.+|+|++.|.+|+.++++++. ++++||+|+++.|||+|++++++|++.++++++.|+.||+|+++ +.+.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~-Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFK-GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhC-CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 56799999999999999999974 45677777799999999999999999999999999999999964 3467
Q ss_pred HHHHHh-hcC--CCC
Q 025756 144 ARTFSE-QTK--FKG 155 (248)
Q Consensus 144 ~~~f~~-~~~--fp~ 155 (248)
+++|.+ +++ ||+
T Consensus 96 ~~~f~~~~~~~~fpv 110 (183)
T PTZ00256 96 IKEYVQKKFNVDFPL 110 (183)
T ss_pred HHHHHHHhcCCCCCC
Confidence 888864 554 664
No 36
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.65 E-value=1.5e-15 Score=121.82 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=98.1
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChh-hHHHHHHHHhcHHHHHHCC---CEEEEEeCC----CHHHHH
Q 025756 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASG---VALVLIGPG----SVEQAR 145 (248)
Q Consensus 74 ~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~-C~~~l~~L~~~~~~l~~~G---v~vV~Is~~----~~~~~~ 145 (248)
++|+|++.|.+|+.+++.++ + ++.+|++|+..||+. |+.++..|++.++++++.| +++|+|+.+ +.+.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~-gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~ 78 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDL-K-GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142)
T ss_pred CCCceEEEcCCCCEEchHHh-C-CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence 47999999999999999997 3 456777888899997 9999999999999998875 999999975 457899
Q ss_pred HHHhhcC--CCC--CCC---hHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEe
Q 025756 146 TFSEQTK--FKG--DPN---HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 218 (248)
Q Consensus 146 ~f~~~~~--fp~--Dp~---~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd 218 (248)
+|+++++ |++ |++ ..+.++||+...... +. . . ..+....|+.||||
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~---~~-------------------~-~----~~~~~~~~~~~lid 131 (142)
T cd02968 79 AYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVP---ED-------------------D-G----DYLVDHSAAIYLVD 131 (142)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecC---CC-------------------C-C----ceeEeccceEEEEC
Confidence 9999875 665 764 788888887744210 00 0 0 00012357899999
Q ss_pred CCCCeEEEEEe
Q 025756 219 PGKSNISYIHR 229 (248)
Q Consensus 219 ~gg~~I~~~h~ 229 (248)
++| +|++.|.
T Consensus 132 ~~G-~i~~~~~ 141 (142)
T cd02968 132 PDG-KLVRYYG 141 (142)
T ss_pred CCC-CEEEeec
Confidence 998 9999885
No 37
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.65 E-value=2.5e-15 Score=126.13 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=89.8
Q ss_pred CCCccccCcCCCcEEecCCCCeEeC--CCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC-CHH
Q 025756 66 SVSEDTKNLLDTVKVYDVNGNAIPI--SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVE 142 (248)
Q Consensus 66 ~~~~~~g~~ap~f~L~d~~G~~v~l--~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~-~~~ 142 (248)
.+...+|+.+|+|++.|.+|+..++ +++.+ ++++|++|+..|||.|++++..|.+. .+.|+++|+|+.+ +.+
T Consensus 31 ~~~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l----~~~~~~vi~V~~~~~~~ 105 (173)
T TIGR00385 31 LPSALIGKPVPAFPLAALREPLQAYTPEAFIQ-GKPVLLNVWASWCPPCRAEHPYLNEL----AKDGLPIVGVDYKDQSQ 105 (173)
T ss_pred CcchhcCCCCCCccccccCCCCcccCHHHhcC-CCEEEEEEECCcCHHHHHHHHHHHHH----HHcCCEEEEEECCCChH
Confidence 3456889999999999999985444 45444 46777777799999999999888654 4568999999975 446
Q ss_pred HHHHHHhhcC--CCC---CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEE
Q 025756 143 QARTFSEQTK--FKG---DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVA 217 (248)
Q Consensus 143 ~~~~f~~~~~--fp~---Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVv 217 (248)
..++|+++++ |+. |++.++.++||+. ..|.+|+|
T Consensus 106 ~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~-----------------------------------------~~P~~~~i 144 (173)
T TIGR00385 106 NALKFLKELGNPYQAILIDPNGKLGLDLGVY-----------------------------------------GAPETFLV 144 (173)
T ss_pred HHHHHHHHcCCCCceEEECCCCchHHhcCCe-----------------------------------------eCCeEEEE
Confidence 6778998776 442 7776666655542 13579999
Q ss_pred eCCCCeEEEEEeCC
Q 025756 218 GPGKSNISYIHRDK 231 (248)
Q Consensus 218 d~gg~~I~~~h~~~ 231 (248)
|++| +|+|.|.+.
T Consensus 145 d~~G-~i~~~~~G~ 157 (173)
T TIGR00385 145 DGNG-VILYRHAGP 157 (173)
T ss_pred cCCc-eEEEEEecc
Confidence 9998 999999873
No 38
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.63 E-value=1.6e-15 Score=124.50 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=68.8
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC--------CCHHHHHH
Q 025756 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (248)
Q Consensus 75 ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~--------~~~~~~~~ 146 (248)
+-+|++.|.+|+.++++++. ++++|++|+..|||+|..++.+|.+.+.++++.|+.||+|++ ++.+.+++
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~--Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYR--GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cccceeECCCCCEecHHHhC--CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHH
Confidence 45799999999999999973 456777889999999999999999999999999999999995 67788999
Q ss_pred HHhh-cC--CCC
Q 025756 147 FSEQ-TK--FKG 155 (248)
Q Consensus 147 f~~~-~~--fp~ 155 (248)
|+++ ++ ||.
T Consensus 80 f~~~~~~~~fp~ 91 (153)
T TIGR02540 80 FARRNYGVTFPM 91 (153)
T ss_pred HHHHhcCCCCCc
Confidence 9975 55 554
No 39
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.62 E-value=3e-15 Score=118.88 Aligned_cols=103 Identities=13% Similarity=0.269 Sum_probs=85.6
Q ss_pred CCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC------CCHHHHHHHHhhcC--CCC-
Q 025756 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP------GSVEQARTFSEQTK--FKG- 155 (248)
Q Consensus 85 G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~------~~~~~~~~f~~~~~--fp~- 155 (248)
|+.++++++ ++ +++|++|+..||+.|++++..|.+.++++++.|+.||+|+. ++.+.+++|+++++ ||+
T Consensus 13 ~~~v~l~~~-~g-k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQL-RG-KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHh-CC-CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 578999997 44 56677778999999999999999999999999999999976 45788999999876 555
Q ss_pred -CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEEEEeCC
Q 025756 156 -DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDK 231 (248)
Q Consensus 156 -Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~~h~~~ 231 (248)
|++.++++.||+.. .|.+||||++| +|+|.|.+.
T Consensus 91 ~D~~~~~~~~~~v~~-----------------------------------------~P~~~vid~~G-~v~~~~~G~ 125 (126)
T cd03012 91 NDNDYATWRAYGNQY-----------------------------------------WPALYLIDPTG-NVRHVHFGE 125 (126)
T ss_pred ECCchHHHHHhCCCc-----------------------------------------CCeEEEECCCC-cEEEEEecC
Confidence 99888888777630 24689999998 999999874
No 40
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.59 E-value=2.6e-14 Score=110.58 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=64.3
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCC
Q 025756 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (248)
Q Consensus 76 p~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~f 153 (248)
|+|++.|.+|+.++++++.+ ++.+|++|++.||+.|++++..|.+.++++ +.++.+|+|+.++.+..++|++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~-gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~-~~~~~vi~v~~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISP-GRPTLLFFLSPTCPVCKKLLPVIRSIARAE-ADWLDVVLASDGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccC-CCeEEEEEECCCCcchHhHhHHHHHHHHHh-cCCcEEEEEeCCCHHHHHHHHHHhCC
Confidence 78999999999999999753 455566678999999999999999987776 45799999988888899999998754
No 41
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.58 E-value=2.7e-14 Score=113.03 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=85.5
Q ss_pred CcCCCcEEecCCC--CeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC-CCHHHHHHHHh
Q 025756 73 NLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSE 149 (248)
Q Consensus 73 ~~ap~f~L~d~~G--~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~-~~~~~~~~f~~ 149 (248)
.++|+|++.|.+| +.++++++. ++ .+|+.|+..|||.|++++..|.+...+. +++||+|+. ++.+.+++|++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~-gk-~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLK-GK-PYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCCcccccccCCCccccHHHcC-CC-EEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence 3689999999998 888888873 44 4555556999999999999998876543 599999995 56678899998
Q ss_pred hcCCCC-----CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeE
Q 025756 150 QTKFKG-----DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNI 224 (248)
Q Consensus 150 ~~~fp~-----Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I 224 (248)
++++++ |++.++.+.||+. .+|.+|+||++| +|
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~-----------------------------------------~~P~~~~ld~~G-~v 113 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVY-----------------------------------------GVPETFLIDGDG-II 113 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCC-----------------------------------------CCCeEEEECCCc-eE
Confidence 876443 6655555444432 246799999998 99
Q ss_pred EEEEeCC
Q 025756 225 SYIHRDK 231 (248)
Q Consensus 225 ~~~h~~~ 231 (248)
++.+.+.
T Consensus 114 ~~~~~G~ 120 (127)
T cd03010 114 RYKHVGP 120 (127)
T ss_pred EEEEecc
Confidence 9999874
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.52 E-value=1.9e-13 Score=103.10 Aligned_cols=109 Identities=20% Similarity=0.233 Sum_probs=90.1
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC--HHHHHHHHhhcC--
Q 025756 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTK-- 152 (248)
Q Consensus 77 ~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~--~~~~~~f~~~~~-- 152 (248)
+|++.|.+|+.+++.++. ++.+|++|+..||+.|+..+..|.+...++.+.++.+++|+.+. .+.+++|.++++
T Consensus 1 ~~~~~~~~g~~~~~~~~~--~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLK--GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHcC--CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 578899999999999974 45777777799999999999999999999988899999999998 889999999876
Q ss_pred CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEEEEe
Q 025756 153 FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHR 229 (248)
Q Consensus 153 fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~~h~ 229 (248)
|++ |++.++.+.||+. ..|..||+|++| +|++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~-----------------------------------------~~P~~~l~d~~g-~v~~~~~ 115 (116)
T cd02966 79 FPVLLDPDGELAKAYGVR-----------------------------------------GLPTTFLIDRDG-RIRARHV 115 (116)
T ss_pred cceEEcCcchHHHhcCcC-----------------------------------------ccceEEEECCCC-cEEEEec
Confidence 444 7766666666654 124589999987 8988764
No 43
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.8e-13 Score=113.64 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=122.5
Q ss_pred CCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHH
Q 025756 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (248)
Q Consensus 66 ~~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~ 145 (248)
.|....|+.+|+|+..+..| .|.|-|++++.+.||+-.++.+.|.|..|+.+++...++|++.|+++|+.|+++.+.++
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred CCcccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 45678999999999998888 78999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHhhc-----------CCCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeec
Q 025756 146 TFSEQT-----------KFKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 212 (248)
Q Consensus 146 ~f~~~~-----------~fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlg 212 (248)
.|.+.. +||+ |+++++.-.|||-.... .. + .+.+...+
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e------------------~~---------~--~~~~~T~R 132 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEE------------------KK---------N--IGDGKTVR 132 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhH------------------cC---------C--CCCCceEE
Confidence 776532 3555 99999999998864321 00 0 12335678
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025756 213 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 248 (248)
Q Consensus 213 G~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~~ 248 (248)
+.|||||+. +|+.......+..| ..+|||+++-|
T Consensus 133 avfvi~pdk-KirLs~lYP~ttGR-N~dEiLRvids 166 (224)
T KOG0854|consen 133 AVFVIDPDK-KIRLSFLYPSTTGR-NFDEILRVIDS 166 (224)
T ss_pred EEEEECCCc-eEEEEEEcccccCc-CHHHHHHHHHH
Confidence 999999996 88887766555444 46799887643
No 44
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.48 E-value=9.9e-13 Score=127.68 Aligned_cols=120 Identities=12% Similarity=0.096 Sum_probs=96.0
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC------C
Q 025756 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------S 140 (248)
Q Consensus 67 ~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~------~ 140 (248)
+..+.++.+|+|++.|.+|+.+.++ ++++||+.||..||+.|+.++..|.+.+++++..+++||+|+.+ +
T Consensus 30 ~~~~~~~~lP~f~l~D~dG~~v~ls----kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 30 GTATVPHTLSTLKTADNRPASVYLK----KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccccCCCCCeEeecCCCceeecc----CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 3467778999999999999999987 35688999999999999999999999999988789999999863 2
Q ss_pred HHHHHHHHhhcCC---CC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEE
Q 025756 141 VEQARTFSEQTKF---KG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 215 (248)
Q Consensus 141 ~~~~~~f~~~~~f---p~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~f 215 (248)
.+.+++|.+..+| |+ |++.++.+.||+. -+|.+|
T Consensus 106 ~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~-----------------------------------------giPTt~ 144 (521)
T PRK14018 106 DGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNIS-----------------------------------------VYPSWA 144 (521)
T ss_pred HHHHHHHHHhCCCcccceeccccHHHHHHcCCC-----------------------------------------CcCeEE
Confidence 3456677765554 44 7777666666543 145789
Q ss_pred EEeCCCCeEEEEEeCCC
Q 025756 216 VAGPGKSNISYIHRDKE 232 (248)
Q Consensus 216 Vvd~gg~~I~~~h~~~~ 232 (248)
|||++| +|++.+.+..
T Consensus 145 IIDkdG-kIV~~~~G~~ 160 (521)
T PRK14018 145 IIGKDG-DVQRIVKGSI 160 (521)
T ss_pred EEcCCC-eEEEEEeCCC
Confidence 999998 9999998854
No 45
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.40 E-value=3.2e-12 Score=109.02 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=75.2
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC--------CCHHHH
Q 025756 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQA 144 (248)
Q Consensus 73 ~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~--------~~~~~~ 144 (248)
+.+++|++.|.+|+.++|+++. +++||+.++++||++|. ++.+|.++++++++.|+.|++|.+ ++.+.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~--GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYA--GNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhC--CCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 4689999999999999999974 46777777999999996 799999999999999999999988 567889
Q ss_pred HHHHh-hcC--CCC--------CCChHHHHHcC
Q 025756 145 RTFSE-QTK--FKG--------DPNHSSYEALS 166 (248)
Q Consensus 145 ~~f~~-~~~--fp~--------Dp~~~~y~alG 166 (248)
++|++ +++ ||+ +..+-+|+-|.
T Consensus 80 ~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk 112 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLI 112 (183)
T ss_pred HHHHHHccCCCceeEEEEccCCCCCCHHHHHHH
Confidence 99997 565 665 33345676653
No 46
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.37 E-value=6.9e-12 Score=98.21 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=66.7
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC--CHHHHHHHHhhcCC
Q 025756 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKF 153 (248)
Q Consensus 76 p~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~--~~~~~~~f~~~~~f 153 (248)
|+|++.|.+|+.+++.++- + +.+|++|...||+.|+.++..|.+.+++ +++++|+.+ +.+.+++|.+++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~-~-k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESLS-G-KPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHhC-C-CEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 7899999999999999963 3 4555555699999999999999988765 667778765 46888999988764
Q ss_pred CC----CCChHHHHHcCC
Q 025756 154 KG----DPNHSSYEALSF 167 (248)
Q Consensus 154 p~----Dp~~~~y~alGl 167 (248)
++ |++.++.+.||+
T Consensus 74 ~~~~~~d~~~~~~~~~~i 91 (123)
T cd03011 74 GFPVINDPDGVISARWGV 91 (123)
T ss_pred CccEEECCCcHHHHhCCC
Confidence 44 777777666654
No 47
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.36 E-value=2.8e-12 Score=102.02 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=58.7
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC--CCEEEEEeCCCH-HHHHHHHhhcC
Q 025756 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTK 152 (248)
Q Consensus 80 L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~--Gv~vV~Is~~~~-~~~~~f~~~~~ 152 (248)
|.|.+|+.++++++. ++++|++|+..||+.|++++..|.+.++++++. +++||+|+.+.. +..++|.++++
T Consensus 3 l~~~~G~~v~l~~~~--gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 76 (131)
T cd03009 3 LLRNDGGKVPVSSLE--GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMP 76 (131)
T ss_pred ccccCCCCccHHHhC--CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCC
Confidence 568899999999973 457888999999999999999999999999875 799999998865 34556665543
No 48
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.34 E-value=7.2e-12 Score=103.23 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=54.8
Q ss_pred CeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC-------CCEEEEEeCCCH-HHHHHHHhhcC
Q 025756 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-------GVALVLIGPGSV-EQARTFSEQTK 152 (248)
Q Consensus 86 ~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~-------Gv~vV~Is~~~~-~~~~~f~~~~~ 152 (248)
+.++++++ ++++|++.|+..|||+|+++++.|.+.+.++++. ++.||+|+.+.. +.+++|.++.+
T Consensus 16 ~~~~ls~~--kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~ 88 (146)
T cd03008 16 EREIVARL--ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMP 88 (146)
T ss_pred ccccHHHh--CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCC
Confidence 45677786 4578999999999999999999999999988754 799999998855 45888998876
No 49
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.30 E-value=1.7e-11 Score=104.64 Aligned_cols=128 Identities=14% Similarity=0.141 Sum_probs=91.4
Q ss_pred ccccCcCCCcEEecC-----CCC-----eEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEE-----
Q 025756 69 EDTKNLLDTVKVYDV-----NGN-----AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVAL----- 133 (248)
Q Consensus 69 ~~~g~~ap~f~L~d~-----~G~-----~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~v----- 133 (248)
.+.|+.+|.+.+.|. +|+ .++.++| .+++.|+.|++.||+.|+.+...|.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l--~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL--AGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHc--CCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 577888888887765 444 4555565 378999999999999999999998776 6778998
Q ss_pred -EEEeCCCH-HH----HHHHHhhc--CCCC-----CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhcccccc
Q 025756 134 -VLIGPGSV-EQ----ARTFSEQT--KFKG-----DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFE 200 (248)
Q Consensus 134 -V~Is~~~~-~~----~~~f~~~~--~fp~-----Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~ 200 (248)
++|+.++. .. ++.|+++. +||+ |++..+..+||+..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~------------------------------- 145 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNS------------------------------- 145 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCC-------------------------------
Confidence 99998863 33 44455543 4773 77776666666431
Q ss_pred ccccCCCceeeceE-EEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 025756 201 RDTVSRGGWQQGGI-IVAGPGKSNISYIHRDKEAGDDPDIQDILKAC 246 (248)
Q Consensus 201 g~~~~~~~~qlgG~-fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al 246 (248)
+|.+ ||||++| +|++.|.+.-.. .++++++..+
T Consensus 146 ----------~P~T~fVIDk~G-kVv~~~~G~l~~--ee~e~~~~li 179 (184)
T TIGR01626 146 ----------EDSAIIVLDKTG-KVKFVKEGALSD--SDIQTVISLV 179 (184)
T ss_pred ----------CCceEEEECCCC-cEEEEEeCCCCH--HHHHHHHHHH
Confidence 2235 9999998 999999985333 2445555544
No 50
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=1.8e-11 Score=128.04 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=101.1
Q ss_pred CccccCcCCCcEEec--CCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC---C---
Q 025756 68 SEDTKNLLDTVKVYD--VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP---G--- 139 (248)
Q Consensus 68 ~~~~g~~ap~f~L~d--~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~---~--- 139 (248)
....|..+|+|...+ .+|+++++.+-++ ++++|+.||..||+.|+.+++.|.+.++++++.|+.||+|+. +
T Consensus 390 ~~~~g~~~p~f~~~~~~~~g~~~~l~~~lk-GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 390 SKKTATKVPEFPPKLDWLNTAPLQFRRDLK-GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEK 468 (1057)
T ss_pred ccccCCcCCCCcccccccCCccccchhhcC-CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccc
Confidence 456799999999876 6899999853343 578999999999999999999999999999989999999973 2
Q ss_pred CHHHHHHHHhhcC--CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEE
Q 025756 140 SVEQARTFSEQTK--FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 215 (248)
Q Consensus 140 ~~~~~~~f~~~~~--fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~f 215 (248)
+.+.+++|.++++ ||. |.+.++.+.||+. -+|..|
T Consensus 469 ~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~-----------------------------------------~iPt~i 507 (1057)
T PLN02919 469 DLEAIRNAVLRYNISHPVVNDGDMYLWRELGVS-----------------------------------------SWPTFA 507 (1057)
T ss_pred cHHHHHHHHHHhCCCccEEECCchHHHHhcCCC-----------------------------------------ccceEE
Confidence 3456788888776 444 7666666555432 245789
Q ss_pred EEeCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 025756 216 VAGPGKSNISYIHRDKEAGDDPDIQDILKAC 246 (248)
Q Consensus 216 Vvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al 246 (248)
|||++| +|.+.+.+. .+..+++++++.+
T Consensus 508 lid~~G-~iv~~~~G~--~~~~~l~~~l~~~ 535 (1057)
T PLN02919 508 VVSPNG-KLIAQLSGE--GHRKDLDDLVEAA 535 (1057)
T ss_pred EECCCC-eEEEEEecc--cCHHHHHHHHHHH
Confidence 999998 899887763 3334555555543
No 51
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.29 E-value=2.9e-11 Score=102.88 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=75.7
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHh
Q 025756 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~ 149 (248)
.....-++|++. +|+.++++++. |++|+..|||+|++++..|.+.++++ |+.|++|+.+...
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~------lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------- 111 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK------VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------- 111 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce------EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-------
Confidence 444577888885 89999999972 56689999999999999999988775 7999999987542
Q ss_pred hcCCCC--C-CChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEE
Q 025756 150 QTKFKG--D-PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISY 226 (248)
Q Consensus 150 ~~~fp~--D-p~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~ 226 (248)
...||. | ++..+.+.||.. ...+|.+||||++| ++.+
T Consensus 112 ~~~fPv~~dd~~~~~~~~~g~~---------------------------------------~~~iPttfLId~~G-~i~~ 151 (181)
T PRK13728 112 DTAFPEALPAPPDVMQTFFPNI---------------------------------------PVATPTTFLVNVNT-LEAL 151 (181)
T ss_pred CCCCceEecCchhHHHHHhCCC---------------------------------------CCCCCeEEEEeCCC-cEEE
Confidence 135775 3 333333333320 01357899999998 7765
Q ss_pred -EEeCC
Q 025756 227 -IHRDK 231 (248)
Q Consensus 227 -~h~~~ 231 (248)
.|++.
T Consensus 152 ~~~~G~ 157 (181)
T PRK13728 152 PLLQGA 157 (181)
T ss_pred EEEECC
Confidence 78873
No 52
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.6e-10 Score=96.92 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=109.1
Q ss_pred cccCcCCCcE---EecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHH
Q 025756 70 DTKNLLDTVK---VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (248)
Q Consensus 70 ~~g~~ap~f~---L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~ 146 (248)
.+..++|+|+ +.|-.=+.++|+++.+ +.+|++||...+...|=.|..++++.+++|++.|++||++|.|+...+.+
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~g-kyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKG-KYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLA 83 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcc-cEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhh
Confidence 3445557776 4555557899999764 67899999999999999999999999999999999999999999999999
Q ss_pred HHhh------cC---CCC--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEE
Q 025756 147 FSEQ------TK---FKG--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 215 (248)
Q Consensus 147 f~~~------~~---fp~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~f 215 (248)
|... ++ +|+ |+++++.+.||+.... ++..+.|.|
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~-----------------------------------~G~~lRglf 128 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKED-----------------------------------EGIALRGLF 128 (196)
T ss_pred HhcCchhhCCcCccccceeeccchhhHHhcCceecC-----------------------------------CCcceeeeE
Confidence 9852 12 666 9999999999987442 124567999
Q ss_pred EEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 216 VAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 216 Vvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
|||++| .++-.-...-+- --.+||+|+.++
T Consensus 129 IId~~g-i~R~it~NDlpv-gRSVdE~lRLvq 158 (196)
T KOG0852|consen 129 IIDPDG-ILRQITINDLPV-GRSVDETLRLVQ 158 (196)
T ss_pred EEcccc-ceEEeeecccCC-CccHHHHHHHHH
Confidence 999997 777655553333 336788877654
No 53
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.19 E-value=7.1e-11 Score=94.49 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=56.1
Q ss_pred CeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC--CCEEEEEeCCCH-HHHHHHHhhcC
Q 025756 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTK 152 (248)
Q Consensus 86 ~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~--Gv~vV~Is~~~~-~~~~~f~~~~~ 152 (248)
+.++++++ +++++|++|++.||+.|++++..|++.++++++. +++||+|+.+.. +.+++|.++++
T Consensus 8 ~~v~l~~~--~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~ 75 (132)
T cd02964 8 GVVPVSAL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP 75 (132)
T ss_pred ccccHHHh--CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC
Confidence 49999997 3578999999999999999999999999999875 899999998854 57888888774
No 54
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.3e-09 Score=87.14 Aligned_cols=136 Identities=11% Similarity=0.176 Sum_probs=108.9
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHH
Q 025756 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (248)
Q Consensus 67 ~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~ 146 (248)
..+++|++||+|++.+.+.+.+++.+.- +++.||..|+.--.|.|-.+++.+++...++. |+.|..||.|-+....+
T Consensus 16 ~~~~vGd~ap~ftl~~~dL~~v~l~~~~-gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~R 92 (158)
T COG2077 16 NEPQVGDKAPDFTLVGKDLNDVSLADFA-GKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKR 92 (158)
T ss_pred CCCccCCcCCceEEEcCcccceeccccC-CceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhh
Confidence 3479999999999999999999999964 56788999999999999999999999888764 49999999999999999
Q ss_pred HHhhcCCCC-----CC-ChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeeceEEEEeCC
Q 025756 147 FSEQTKFKG-----DP-NHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 220 (248)
Q Consensus 147 f~~~~~fp~-----Dp-~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~g 220 (248)
|+...+..- |- ++++.++||+..... | -.++.-+++||+|.+
T Consensus 93 fC~aeGi~nv~~lSd~r~~~Fge~yGv~I~eg----p----------------------------L~gLlARaV~V~De~ 140 (158)
T COG2077 93 FCGAEGIENVITLSDFRDRAFGENYGVLINEG----P----------------------------LAGLLARAVFVLDEN 140 (158)
T ss_pred hhhhcCcccceEhhhhhhhhhhHhhCEEeccc----c----------------------------ccCeeeeEEEEEcCC
Confidence 998776441 32 334556666553221 0 013556799999988
Q ss_pred CCeEEEEEeCCCCCCCCC
Q 025756 221 KSNISYIHRDKEAGDDPD 238 (248)
Q Consensus 221 g~~I~~~h~~~~~~Dh~~ 238 (248)
| +|.|.-.-.+..++|+
T Consensus 141 g-~V~y~elv~eit~ePn 157 (158)
T COG2077 141 G-KVTYSELVPEITEEPN 157 (158)
T ss_pred C-cEEEEEccchhhcCCC
Confidence 7 9999999888888875
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.04 E-value=1.1e-09 Score=82.15 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=47.8
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHH-HCCCEEEEEeCCCH-HHHHHHHhhcCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSV-EQARTFSEQTKF 153 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~-~~Gv~vV~Is~~~~-~~~~~f~~~~~f 153 (248)
+++++++|+..||+.|++++..|.+.++++. ..++++|+|+.+.. +..++|.++.++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~ 59 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNF 59 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCC
Confidence 4688999999999999999999999999998 78999999999965 567778777643
No 56
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.8e-08 Score=80.74 Aligned_cols=145 Identities=15% Similarity=0.216 Sum_probs=109.7
Q ss_pred ccccCcCCC--cEEecCC-----CCeEeCCCccCCCeEEEEEEcCCCChh-hHHHHHHHHhcHHHHHHCCCE-EEEEeCC
Q 025756 69 EDTKNLLDT--VKVYDVN-----GNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASGVA-LVLIGPG 139 (248)
Q Consensus 69 ~~~g~~ap~--f~L~d~~-----G~~v~l~~l~~~~~vvlvF~R~~~Cp~-C~~~l~~L~~~~~~l~~~Gv~-vV~Is~~ 139 (248)
.++|+.+|+ .++...+ +.++++++|.++++++|+=.++++.|. |..|++-+.+..++|+++|+. ||.|+.+
T Consensus 9 i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 9 IAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred ccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 578899998 5533322 238999999999899999999999999 788999999999999999997 8899999
Q ss_pred CHHHHHHHHhhcCCC----C--CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCceeece
Q 025756 140 SVEQARTFSEQTKFK----G--DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 213 (248)
Q Consensus 140 ~~~~~~~f~~~~~fp----~--Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~qlgG 213 (248)
++...++|.+.++-. + |++.++.+++|+.......+ .++| .-+=
T Consensus 89 DpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~-------------~g~R-----------------S~R~ 138 (171)
T KOG0541|consen 89 DPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKL-------------LGVR-----------------SRRY 138 (171)
T ss_pred cHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeecccc-------------Cccc-----------------cccE
Confidence 999999999877632 2 99999999999987653111 1222 1112
Q ss_pred EEEEeCCCCeEEEEEeCCCCCC--CCCHHHHHHH
Q 025756 214 IIVAGPGKSNISYIHRDKEAGD--DPDIQDILKA 245 (248)
Q Consensus 214 ~fVvd~gg~~I~~~h~~~~~~D--h~~i~eIL~a 245 (248)
..|++ +| +|.+..+..+..| --..+.||+.
T Consensus 139 a~vve-ng-kV~~~nvE~~g~~~t~ssa~~il~~ 170 (171)
T KOG0541|consen 139 ALVVE-NG-KVTVVNVEEGGTDFTVSSAEDILKQ 170 (171)
T ss_pred EEEEe-CC-eEEEEEeccCCCceEEecHHHHhhc
Confidence 56776 55 8999999887775 2234555543
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.72 E-value=7.6e-08 Score=79.90 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=40.5
Q ss_pred CCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 84 NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 84 ~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
.|+.+.++++ .|++||..||++|++++..|.+.++++ |+.|++|+.++.
T Consensus 43 ~G~~~~l~~~------~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 43 QGRHANQDDY------ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred cchhhhcCCC------EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 3777777664 288899999999999999999988765 789999998753
No 58
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.67 E-value=2.4e-07 Score=78.18 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=64.2
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCC-hhhHHHHHHHHhcHHHHHHC--CCEEEEEeCCC----HHH
Q 025756 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGC-VLCRKRADYLAAKKDVMDAS--GVALVLIGPGS----VEQ 143 (248)
Q Consensus 71 ~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~C-p~C~~~l~~L~~~~~~l~~~--Gv~vV~Is~~~----~~~ 143 (248)
.....|+|+|.|++|+.++++++ +++++|++|=...| -.|-..+..|++..+++.+. .+++|.|+.|+ ++.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~--~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~ 105 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDL--KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEV 105 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGG--TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHH
T ss_pred CCccCCCcEEEcCCCCEecHHHh--CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHH
Confidence 44568899999999999999997 34566777778888 58999999999999999764 68899999774 578
Q ss_pred HHHHHhhcC
Q 025756 144 ARTFSEQTK 152 (248)
Q Consensus 144 ~~~f~~~~~ 152 (248)
+++|++.++
T Consensus 106 L~~Y~~~~~ 114 (174)
T PF02630_consen 106 LKKYAKKFG 114 (174)
T ss_dssp HHHHHHCHT
T ss_pred HHHHHHhcC
Confidence 999998663
No 59
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.7e-07 Score=77.17 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=90.5
Q ss_pred ccccCcCCCcEEecC------CC-CeEeCCCccCCCeEEEEEEcCCCChhhHH-HHHHHHhcHHHHHHCCCE-EEEEeCC
Q 025756 69 EDTKNLLDTVKVYDV------NG-NAIPISDLWKDRKAVVAFARHFGCVLCRK-RADYLAAKKDVMDASGVA-LVLIGPG 139 (248)
Q Consensus 69 ~~~g~~ap~f~L~d~------~G-~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~-~l~~L~~~~~~l~~~Gv~-vV~Is~~ 139 (248)
.++|+++|..++... +| ..++..+|++++++||+-+++++.|.|.. |++.+.+.+++|+++||. |++|+..
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 578999999998765 22 46777889999999999999999999998 999999999999999997 9999999
Q ss_pred CHHHHHHHHhhcCCC----C--CCChHHHHHcCCcccc
Q 025756 140 SVEQARTFSEQTKFK----G--DPNHSSYEALSFVSGV 171 (248)
Q Consensus 140 ~~~~~~~f~~~~~fp----~--Dp~~~~y~alGl~~~~ 171 (248)
+..-..+|.+..+-. + |.+.++-+++|+....
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~ 120 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDK 120 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeec
Confidence 999999999987755 2 9999999999997654
No 60
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.50 E-value=1.2e-06 Score=76.02 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=90.0
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCh-hhHHHHHHHHhcHHHHH---HCCCEEEEEeCCC----HHHHHHHH
Q 025756 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMD---ASGVALVLIGPGS----VEQARTFS 148 (248)
Q Consensus 77 ~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp-~C~~~l~~L~~~~~~l~---~~Gv~vV~Is~~~----~~~~~~f~ 148 (248)
+|+|.|++|+.+++.++ +++..|+||=.+.|| .|-..+..|.....++. +..+++|.|+.|. ++.+++|.
T Consensus 49 ~f~l~d~~G~~~~~~~l--~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~ 126 (207)
T COG1999 49 DFELTDQDGKPFTLKDL--KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA 126 (207)
T ss_pred ceeeecCCCCEeecccc--CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 79999999999999998 345667777778887 79999999999988887 5667899999775 57788888
Q ss_pred hhcCCC----C-----CCChHHHHHcCCccccccccCchhhHHHHHHHHhhhhhhccccccccccCCCce-eeceEEEEe
Q 025756 149 EQTKFK----G-----DPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGW-QQGGIIVAG 218 (248)
Q Consensus 149 ~~~~fp----~-----Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~~~~g~~~~~~~~~~g~~~~~~~~-qlgG~fVvd 218 (248)
+ .+|. . +...++.++|++..+... ..+. ..... --...|++|
T Consensus 127 ~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~-------------------------~~~~--~~y~~~Hs~~~~lid 178 (207)
T COG1999 127 E-LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVP-------------------------LDDS--QNYTIDHSAGFYLID 178 (207)
T ss_pred c-ccCCCCeeeeeCCHHHHHHHHHHhcceeeecc-------------------------cCCC--CCceeeeeeEEEEEC
Confidence 8 2222 1 333455566665532110 0000 00011 234688999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 219 PGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 219 ~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
++| ++...+..... .++|++.++
T Consensus 179 ~~G-~~~~~~~~~~~-----~~~i~~~l~ 201 (207)
T COG1999 179 ADG-RFLGTYDYGEP-----PEEIAADLK 201 (207)
T ss_pred CCC-eEEEEecCCCC-----hHHHHHHHH
Confidence 998 77766654333 567766554
No 61
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.39 E-value=1.1e-06 Score=71.77 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=49.1
Q ss_pred EEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 79 KVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 79 ~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
++.+.+++...+.+....++.+|++|+..||+.|+..+..|.+..+++.. .+.++.|..+.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~ 62 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDN 62 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCC
Confidence 45566777778887766777888899999999999999999998888753 47788887664
No 62
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.28 E-value=9e-07 Score=73.54 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=71.6
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCC--CEEEEEeCCCH-HHHHHHHhhc
Q 025756 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV-EQARTFSEQT 151 (248)
Q Consensus 75 ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~G--v~vV~Is~~~~-~~~~~f~~~~ 151 (248)
+....|.+.+|..+..++.+. +++|.++|+..|||.||..-..|.+.|+++++.+ .+||.||.|.. +....|.+.+
T Consensus 12 ~~g~~l~~~~~~~~~~~~~l~-gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 12 LRGNRLRKQDGTEVLASEALQ-GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred HcCCeeeccCCccchHhHhhC-CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc
Confidence 445788899999998887665 4899999999999999999999999999998664 77999999876 4667777653
Q ss_pred -C----CCC-C-CChHHHHHcCCc
Q 025756 152 -K----FKG-D-PNHSSYEALSFV 168 (248)
Q Consensus 152 -~----fp~-D-p~~~~y~alGl~ 168 (248)
+ .|+ | -.+++-+.|++.
T Consensus 91 ~~~W~~iPf~d~~~~~l~~ky~v~ 114 (157)
T KOG2501|consen 91 HGDWLAIPFGDDLIQKLSEKYEVK 114 (157)
T ss_pred CCCeEEecCCCHHHHHHHHhcccC
Confidence 2 444 3 334555555554
No 63
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.25 E-value=1.2e-05 Score=72.64 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=39.7
Q ss_pred CeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 86 ~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
+...+.++. ++.+|++|+..||++|+.++..|.+...++ |+.|++|+.+..
T Consensus 157 ~~~~l~~l~--~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~ 207 (271)
T TIGR02740 157 KDRVMKDLA--KKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGG 207 (271)
T ss_pred HHHHHHHhc--CCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCC
Confidence 346666753 346777777789999999999999887665 699999998764
No 64
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.5e-05 Score=66.06 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=68.9
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC--------CCHHHH
Q 025756 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQA 144 (248)
Q Consensus 73 ~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~--------~~~~~~ 144 (248)
..+-+|++.|.+|++++|+++ +++|||+.--++-|.+-- +-..|..+|.++++.|..|+++-+ ++.+.+
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~--~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDY--KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccccceeeccCCCCccHHHh--CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 346689999999999999996 467999999999999987 888999999999999999999974 466889
Q ss_pred HHHHhhc-C--CCC
Q 025756 145 RTFSEQT-K--FKG 155 (248)
Q Consensus 145 ~~f~~~~-~--fp~ 155 (248)
++|++.+ + ||+
T Consensus 80 ~~fC~~~YgVtFp~ 93 (162)
T COG0386 80 AKFCQLNYGVTFPM 93 (162)
T ss_pred HHHHHhccCceeee
Confidence 9999854 3 665
No 65
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=9.7e-05 Score=61.86 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=69.1
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC--------CHHH
Q 025756 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQ 143 (248)
Q Consensus 72 g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~--------~~~~ 143 (248)
-..+-+|++.|.+|+.|+|+.+ .++|||+.-=++.|.+-..+-.+|.+++++++..|..|++.-|. +-+.
T Consensus 11 ~~siydf~~~d~~G~~v~l~~y--rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 11 KGSIYDFSAKDLDGEYVSLSQY--RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hcceeeeEEecCCCCCccHHHh--CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 3457789999999999999998 46799999999999999988889999999999999999999753 4467
Q ss_pred HHHHHh-hcC--CCC
Q 025756 144 ARTFSE-QTK--FKG 155 (248)
Q Consensus 144 ~~~f~~-~~~--fp~ 155 (248)
+..|+. +++ ||+
T Consensus 89 i~~f~~~r~~~~f~i 103 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPI 103 (171)
T ss_pred HHHHHHhccCCCCcc
Confidence 788885 333 565
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.98 E-value=2.1e-05 Score=61.93 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCC-eEEEEEEcCCCChhhHHHHHHHHh---cHHHHHHCCCEEEEEeCCCH
Q 025756 95 KDR-KAVVAFARHFGCVLCRKRADYLAA---KKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 95 ~~~-~vvlvF~R~~~Cp~C~~~l~~L~~---~~~~l~~~Gv~vV~Is~~~~ 141 (248)
+++ +.++++|...||++|+.....+.+ ..+.++ .++.++.|..+..
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~ 60 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGD 60 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCC
Confidence 345 678888899999999999988763 344443 4677888877654
No 67
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.92 E-value=4.1e-05 Score=58.67 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=43.2
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT 151 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~ 151 (248)
++.+|+.|+..||+.|+.....|.+..+++ .++.++.|..+.......+++++
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~ 67 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRRE 67 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHc
Confidence 578999999999999999999999988887 56888999887654445566554
No 68
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=97.89 E-value=7.3e-05 Score=58.67 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=61.0
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC--------CHHHHHHHH
Q 025756 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQARTFS 148 (248)
Q Consensus 77 ~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~--------~~~~~~~f~ 148 (248)
+|++.|.+|+.++|+.+ +++++|+.-=..-|++-. +..+|.++++++...|..|+++-+. +.+.++.|+
T Consensus 3 df~~~~~~G~~v~l~~y--~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY--KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGG--TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHc--CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 68999999999999997 346777777789999999 9999999999999999999999754 346788888
Q ss_pred hh
Q 025756 149 EQ 150 (248)
Q Consensus 149 ~~ 150 (248)
..
T Consensus 80 ~~ 81 (108)
T PF00255_consen 80 KE 81 (108)
T ss_dssp CH
T ss_pred Hh
Confidence 75
No 69
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.83 E-value=2.9e-05 Score=59.37 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=39.8
Q ss_pred ccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHH
Q 025756 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (248)
Q Consensus 93 l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~ 142 (248)
+.+.++.+|+.|+..||+.|+.....|.+.+++++...+.++.|..+..+
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~ 62 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTID 62 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHH
Confidence 33446678899999999999999999999888886556777788777443
No 70
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.81 E-value=0.00038 Score=60.58 Aligned_cols=78 Identities=17% Similarity=0.349 Sum_probs=65.5
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEE--EEc----CCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhh
Q 025756 77 TVKVYDVNGNAIPISDLWKDRKAVVA--FAR----HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (248)
Q Consensus 77 ~f~L~d~~G~~v~l~~l~~~~~vvlv--F~R----~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~ 150 (248)
+..+...+|+ ++|.||++++..||+ |.. ..+|+.|...+..+......|.+.++.+++|+....+.+.+|+++
T Consensus 48 ~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~r 126 (211)
T PF05988_consen 48 DYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRR 126 (211)
T ss_pred CeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHh
Confidence 4666666775 999999998765443 332 469999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 025756 151 TKFKG 155 (248)
Q Consensus 151 ~~fp~ 155 (248)
.+|.+
T Consensus 127 mGW~~ 131 (211)
T PF05988_consen 127 MGWTF 131 (211)
T ss_pred cCCCc
Confidence 98764
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.73 E-value=0.00016 Score=55.38 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=30.1
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHH--HCCCEEEEEeCCCHH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD--ASGVALVLIGPGSVE 142 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~--~~Gv~vV~Is~~~~~ 142 (248)
++.+|++|...|||+|++.-.++.+..+-.+ +.++.++.+..++..
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSR 52 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcc
Confidence 4455555679999999988887776433222 336888888887764
No 72
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.54 E-value=0.00029 Score=54.70 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
.++.+|++|+..||+.|+.....+.+..++++..++.++.|..+..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~ 68 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence 3568899999999999999999999999999877788888887753
No 73
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.52 E-value=0.00063 Score=60.25 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=55.3
Q ss_pred CccccCcCCCcEEecCCCCe-EeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHH
Q 025756 68 SEDTKNLLDTVKVYDVNGNA-IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (248)
Q Consensus 68 ~~~~g~~ap~f~L~d~~G~~-v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~ 128 (248)
....|..|||..|.+.+|+. .++-|+.++++-+|+.|...-||+=+..+.+++++..+|.+
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 46889999999999999998 99999988777788888888999999999999999999864
No 74
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.50 E-value=0.00026 Score=54.12 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=35.3
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
+++++|+.|+..||+.|+.....|.+...++. ++.++.|..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 35678889999999999999999999988875 5778888655
No 75
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.41 E-value=0.00041 Score=53.52 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=38.4
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
++.+|++|...||+.|+.....+.+...+++..++.+..|..+.
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 45778888899999999999999999888887778899998876
No 76
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.38 E-value=0.0003 Score=53.17 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=38.5
Q ss_pred cCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
..+...++++|...||+.|+.....+.+...+++. .+.+..|.++..
T Consensus 15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~ 61 (101)
T cd03003 15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD 61 (101)
T ss_pred hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc
Confidence 34456788888899999999999999999888864 378888888864
No 77
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.30 E-value=0.00067 Score=51.65 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=35.3
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCC--CEEEEEeCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGS 140 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~G--v~vV~Is~~~ 140 (248)
...+|++|+..||+.|+.....|.+...+++..+ +.+..+..+.
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~ 60 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA 60 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc
Confidence 4578999999999999999999999988887655 5555566554
No 78
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.24 E-value=0.00041 Score=51.89 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=37.2
Q ss_pred ccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHH--CCCEEEEEeCCCH
Q 025756 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGSV 141 (248)
Q Consensus 93 l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~--~Gv~vV~Is~~~~ 141 (248)
...+++ +++.|...||+.|+.....+.+.+.+++. ..+.++.|.++..
T Consensus 13 ~~~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~ 62 (102)
T cd03005 13 HIAEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH 62 (102)
T ss_pred HhhcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC
Confidence 334455 67777899999999999999999888875 4577777776654
No 79
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.22 E-value=0.00063 Score=52.07 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=37.7
Q ss_pred CccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC-----CCEEEEEeCCCH
Q 025756 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-----GVALVLIGPGSV 141 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~-----Gv~vV~Is~~~~ 141 (248)
+..+..+.+|++|...||+.|+.....+.+...++++. .+.++.|.++..
T Consensus 13 ~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 13 DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 44555677899999999999999999999988877542 255666666653
No 80
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.21 E-value=0.0015 Score=51.39 Aligned_cols=48 Identities=8% Similarity=-0.069 Sum_probs=39.6
Q ss_pred cCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHH
Q 025756 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (248)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~ 142 (248)
.++.+.+|+.|...||+.|+.....+.+..++++.. +.++.|.++...
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~ 73 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ 73 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh
Confidence 345678888899999999999999999998888543 788889887654
No 81
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.17 E-value=0.0011 Score=49.27 Aligned_cols=44 Identities=9% Similarity=-0.050 Sum_probs=35.4
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
+..+|++|+..||+.|+.....|.+....+.. .+.++.|..+..
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~ 55 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQ 55 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCC
Confidence 46888899999999999999999998888753 466677766553
No 82
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.14 E-value=0.0008 Score=51.04 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=38.0
Q ss_pred CCCeEEEEEEcCCCChhhHHHHHHH---HhcHHHHHHCCCEEEEEeCCCH-HHHHHHHhhc
Q 025756 95 KDRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQT 151 (248)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~~l~~L---~~~~~~l~~~Gv~vV~Is~~~~-~~~~~f~~~~ 151 (248)
+.++.+|+.|...||+.|+.....+ .+....+++ ++.++.|..+.. .....+++++
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~ 68 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRF 68 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHc
Confidence 3456777788899999999988776 345666654 788888876542 2234455444
No 83
>PRK10996 thioredoxin 2; Provisional
Probab=97.13 E-value=0.0005 Score=55.75 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=38.8
Q ss_pred eCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 89 ~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
.+.++.++++.++++|+..||+.|+.....|.+...++.. ++.++.|..+.
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~ 94 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA 94 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC
Confidence 4445555677889999999999999999999888777643 46777776554
No 84
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.10 E-value=0.00095 Score=49.88 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=38.3
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHH-CCCEEEEEeCCCHH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVE 142 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~-~Gv~vV~Is~~~~~ 142 (248)
++.++++|...||+.|+.....+.+....++. ..+.+..|.++..+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ 64 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND 64 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh
Confidence 46788899999999999999999999888866 46778888877653
No 85
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.09 E-value=0.001 Score=50.06 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=37.1
Q ss_pred CccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
++.++ + +|+.|+..||+.|+.....+.+...+++..++.+..|..+..
T Consensus 13 ~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~ 60 (101)
T cd02994 13 LVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE 60 (101)
T ss_pred HHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC
Confidence 44443 3 568999999999999999999988777656778787776653
No 86
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.09 E-value=0.00067 Score=50.81 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=37.5
Q ss_pred CCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC-CCEEEEEeCCC
Q 025756 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-GVALVLIGPGS 140 (248)
Q Consensus 90 l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~-Gv~vV~Is~~~ 140 (248)
+.++.++.+.+++.|...||+.|+.....+.+....+++. .+.++.|..+.
T Consensus 10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 61 (104)
T cd02997 10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK 61 (104)
T ss_pred HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC
Confidence 3444455568889999999999999999999988888653 34455555543
No 87
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.04 E-value=0.0017 Score=49.29 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=36.4
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
.+..+|+.|...||+.|+.....+.+...++. ..+.++.|.++.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCc
Confidence 35568888889999999999999999888775 357888888876
No 88
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.00 E-value=0.0017 Score=48.79 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=36.3
Q ss_pred cCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
.+..++++++|...||+.|+.....|.+...++.. ++.++.|..+.
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~ 55 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE 55 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC
Confidence 34567889999999999999999999888777643 46677777654
No 89
>PRK09381 trxA thioredoxin; Provisional
Probab=96.97 E-value=0.0018 Score=49.48 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=36.1
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
...+++.|+..||+.|+.....|.+...++.. ++.++.|..+..
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~ 64 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN 64 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC
Confidence 45678888889999999999999999888854 578888887654
No 90
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.96 E-value=0.0013 Score=49.16 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=35.1
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHH-HCCCEEEEEeCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGS 140 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~-~~Gv~vV~Is~~~ 140 (248)
++.+|++|+..||+.|++....+.+...+++ ..++.++-|.++.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 4467888889999999999999999888886 3457777777666
No 91
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.96 E-value=0.0022 Score=53.13 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=39.7
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~ 142 (248)
...+|+.|+..||+.|+.....|.+...++...+++++.|..+...
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~ 92 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP 92 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH
Confidence 4578888899999999999999999988887677999999987653
No 92
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=96.94 E-value=0.0036 Score=47.27 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=36.5
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~ 142 (248)
+..+|+.|...||+.|+.....+.+...+++ .++.+..|.++...
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~ 63 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQKYE 63 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCchH
Confidence 4578888889999999999999999888874 35778888877643
No 93
>PTZ00051 thioredoxin; Provisional
Probab=96.91 E-value=0.0015 Score=48.64 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=35.4
Q ss_pred CccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
++.+..+.++++|...||+.|+.....|.+...++ .++.++.|..+.
T Consensus 13 ~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~ 59 (98)
T PTZ00051 13 STLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDE 59 (98)
T ss_pred HHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcc
Confidence 34445678888888999999999999998877654 357777776553
No 94
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.88 E-value=0.0019 Score=47.99 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=35.6
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
...+|++|...||+.|+.....|.+...++.. ++.++-|..+..
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~ 60 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN 60 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc
Confidence 34455555557999999999999999999877 899999988754
No 95
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=96.85 E-value=0.004 Score=55.78 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=62.3
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCh-hhHHHHHHHHhcHHHHHHC-CCE--EEEEeCCC--
Q 025756 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMDAS-GVA--LVLIGPGS-- 140 (248)
Q Consensus 67 ~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp-~C~~~l~~L~~~~~~l~~~-Gv~--vV~Is~~~-- 140 (248)
+.+.+| -.|+|.|.+|+.++=.++.+ +-+|+.|=.++|| .|=+|+..|....+++++. |+. -|+|++|.
T Consensus 114 gk~~iG---GpF~L~d~~Gk~~te~df~G--kw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR 188 (280)
T KOG2792|consen 114 GKPAIG---GPFSLVDHDGKRVTEKDFLG--KWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPER 188 (280)
T ss_pred CCCccC---CceEEEecCCCeeccccccc--ceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence 344555 47999999999999999863 4566667788999 7999999999999999754 333 58888875
Q ss_pred --HHHHHHHHhhc
Q 025756 141 --VEQARTFSEQT 151 (248)
Q Consensus 141 --~~~~~~f~~~~ 151 (248)
++.+.+|.+++
T Consensus 189 D~~~~~~eY~~eF 201 (280)
T KOG2792|consen 189 DSVEVVAEYVSEF 201 (280)
T ss_pred CCHHHHHHHHHhc
Confidence 56778887765
No 96
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.83 E-value=0.002 Score=47.81 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=37.3
Q ss_pred CccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCC-CEEEEEeCCC
Q 025756 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGS 140 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~G-v~vV~Is~~~ 140 (248)
+...+++++++.|...||+.|+.....+.+....++..+ +.++.|..+.
T Consensus 8 ~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 57 (102)
T TIGR01126 8 DIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA 57 (102)
T ss_pred HHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc
Confidence 334456788889999999999999999988888876553 6666666554
No 97
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.79 E-value=0.0019 Score=47.11 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=38.5
Q ss_pred CCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHH-HCCCEEEEEeCCC
Q 025756 91 SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGS 140 (248)
Q Consensus 91 ~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~-~~Gv~vV~Is~~~ 140 (248)
.+...+.+.+|++|...||+.|+.....+.+....++ ..++.++.|..+.
T Consensus 9 ~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 59 (101)
T cd02961 9 DELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59 (101)
T ss_pred HHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc
Confidence 3344445477777778899999999999999888875 5668888887665
No 98
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.75 E-value=0.0045 Score=45.87 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=31.9
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
+.++++|+..||+.|+.....|.+...++ ..++.++.|..+
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~ 55 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE 55 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc
Confidence 67777778999999999999988877776 446666666544
No 99
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.72 E-value=0.0026 Score=50.64 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=36.7
Q ss_pred CccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
+..+.+..++++|...|||+|+...+.|.+..++ .++.+..|..+.
T Consensus 18 ~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~ 63 (122)
T TIGR01295 18 EALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSEN 63 (122)
T ss_pred HHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCC
Confidence 3444567788899999999999999999988765 457788888773
No 100
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.013 Score=51.35 Aligned_cols=89 Identities=16% Similarity=0.322 Sum_probs=68.0
Q ss_pred EEecCCCCeEeCCCccCCCeEEEE--EE----cCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcC
Q 025756 79 KVYDVNGNAIPISDLWKDRKAVVA--FA----RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (248)
Q Consensus 79 ~L~d~~G~~v~l~~l~~~~~vvlv--F~----R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~ 152 (248)
-+++....+.+|.||++++..||+ |+ +..+||.|..-+..+.-....|+..++.+|+|+-...+.+..|.++.+
T Consensus 55 Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmG 134 (247)
T COG4312 55 YVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMG 134 (247)
T ss_pred eEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcC
Confidence 344444448899999987654443 22 345899999999999999999999999999999999999999999998
Q ss_pred CCC----CCChHHHHHcCC
Q 025756 153 FKG----DPNHSSYEALSF 167 (248)
Q Consensus 153 fp~----Dp~~~~y~alGl 167 (248)
|.+ +.+..+-+.|.+
T Consensus 135 W~f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 135 WQFPWVSSTDSDFNRDFQV 153 (247)
T ss_pred CcceeEeccCccccccccc
Confidence 665 444434444443
No 101
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.70 E-value=0.0054 Score=45.78 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=34.0
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
.++.+|++|...||+.|+.....+.+...++.. .+.++.|..+..
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~ 61 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH 61 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch
Confidence 345566666689999999999999988877753 477777776654
No 102
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.69 E-value=0.0035 Score=44.67 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=34.1
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
+.+.++++|...||+.|++....|.+...+ ..++.++.|..+.
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 335677788888999999999988887665 5678888888775
No 103
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.67 E-value=0.0034 Score=49.51 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
++.||++|.+.||+.|+.....+.+.....+ .+..+|.|..+.
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~ 61 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLED 61 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecC
Confidence 4567777779999999999999888655432 444555555543
No 104
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.66 E-value=0.0081 Score=46.90 Aligned_cols=43 Identities=14% Similarity=-0.012 Sum_probs=34.1
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC-C-CEEEEEeCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-G-VALVLIGPG 139 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~-G-v~vV~Is~~ 139 (248)
++.+|+.|+..||+.|+.....+.+...+++.. + +.+..|.++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 458888899999999999999999988888642 2 566666654
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.45 E-value=0.0077 Score=47.74 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=35.0
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
++++||+.|.+.||++|+.-.+-|.+...++... +.+.-|..+..
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev 57 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKV 57 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecccc
Confidence 3578899999999999999888888888887432 66666666643
No 106
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.45 E-value=0.0089 Score=43.99 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=34.8
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
++.++++|...||+.|+.....|.+...++. ..+.++.|..+..
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~ 57 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDEN 57 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCC
Confidence 4467777789999999999999988877774 3588888876654
No 107
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.31 E-value=0.012 Score=46.53 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=31.7
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
...+|+.|...||++|+.-...|.+...++... +.++-|..+.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~ 56 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE 56 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC
Confidence 457889999999999998888888777776321 4555555554
No 108
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.29 E-value=0.014 Score=42.29 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=37.5
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC--CHHHHHHHH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFS 148 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~--~~~~~~~f~ 148 (248)
++++++.| +..||+.|+..+..|.+...++.. ++.++.|... ..+....|.
T Consensus 32 ~~~~~v~f-~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 84 (127)
T COG0526 32 GKPVLVDF-WAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFG 84 (127)
T ss_pred CceEEEEE-EcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHh
Confidence 44555554 499999999999999999888865 7888888885 333444443
No 109
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.29 E-value=0.0049 Score=58.11 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=42.7
Q ss_pred CccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCC--CEEEEEeCCCHHHH
Q 025756 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQA 144 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~G--v~vV~Is~~~~~~~ 144 (248)
++.++.+.++++|...||+.|+.....+.+....+++.+ +.++.|.++....+
T Consensus 13 ~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l 67 (462)
T TIGR01130 13 DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDL 67 (462)
T ss_pred HHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHH
Confidence 344556778899999999999999999999988888776 88888888765433
No 110
>PHA02278 thioredoxin-like protein
Probab=96.23 E-value=0.0077 Score=46.56 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=33.5
Q ss_pred CCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
.++..+|+.|+..||++|+...+.|.+..++.. ..+.++-|..+.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 456788889999999999999998888765532 235666666664
No 111
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.14 E-value=0.012 Score=37.96 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=36.8
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f 147 (248)
|++|...||+.|++....+.+. +....++.++.|..+.......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence 4678899999999999999988 56678899999998887655444
No 112
>PF13728 TraF: F plasmid transfer operon protein
Probab=95.98 E-value=0.025 Score=49.38 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=45.9
Q ss_pred CCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC-CCChHHHHHcCCc
Q 025756 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-DPNHSSYEALSFV 168 (248)
Q Consensus 90 l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~-Dp~~~~y~alGl~ 168 (248)
+.++- ++..+++|||+ .|++|+.++.-|+...++ .|+.|++|+.|... + -.||- =++..+.+.||+.
T Consensus 115 l~~la-~~~gL~~F~~~-~C~~C~~~~pil~~~~~~---yg~~v~~vs~DG~~-~------~~fp~~~~~~g~~~~l~v~ 182 (215)
T PF13728_consen 115 LKQLA-QKYGLFFFYRS-DCPYCQQQAPILQQFADK---YGFSVIPVSLDGRP-I------PSFPNPRPDPGQAKRLGVK 182 (215)
T ss_pred HHHHh-hCeEEEEEEcC-CCchhHHHHHHHHHHHHH---hCCEEEEEecCCCC-C------cCCCCCCCCHHHHHHcCCC
Confidence 44443 45678888888 899999999999887765 49999999988641 0 12443 3345555555553
No 113
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.83 E-value=0.022 Score=46.81 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=34.7
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~ 143 (248)
.++||+-|.+.||++|+....-|.+..+++... +.++-|..|....
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~d 68 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPD 68 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHH
Confidence 457777888899999999988888887776322 6677777776543
No 114
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=95.70 E-value=0.02 Score=55.59 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=40.2
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
.+..+|+.|...||++|+.....|.+...+++..++.++.|..+..
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 4568899999999999999999999999998877888988988753
No 115
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.69 E-value=0.02 Score=45.66 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=32.9
Q ss_pred eEEEEEEcC-------CCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 98 KAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 98 ~vvlvF~R~-------~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
..+++.|.+ .||+.|+.....|.+..+++. .++.++-|..+..
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~ 71 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDR 71 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCc
Confidence 344555555 999999999999999887775 3588888887753
No 116
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.63 E-value=0.021 Score=45.48 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=33.0
Q ss_pred CCCeEEEEEEcCCCChh--hHHHHH--HHHh-cHHHHHHCCCEEEEEeCCCH
Q 025756 95 KDRKAVVAFARHFGCVL--CRKRAD--YLAA-KKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~--C~~~l~--~L~~-~~~~l~~~Gv~vV~Is~~~~ 141 (248)
+...+||+||+.+||++ |+..+. .|.+ ..+.+++.++.++-|..+..
T Consensus 25 ~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~ 76 (120)
T cd03065 25 KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD 76 (120)
T ss_pred hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC
Confidence 34569999999999988 995443 3444 44455666788887777754
No 117
>PLN02309 5'-adenylylsulfate reductase
Probab=95.53 E-value=0.03 Score=54.34 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=39.6
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
.++.+|++|...||++|+.....+.+...++...++.++.|..+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 46788999999999999999999999988888778999999988
No 118
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.029 Score=43.75 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=37.9
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT 151 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~ 151 (248)
.+.+|+.|...||++|+.-.+-+.+...++.. +..+-|..|. ...+++.+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~ 70 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEF 70 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhc
Confidence 46788888999999999998888887777654 7777777776 44554433
No 119
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.47 E-value=0.034 Score=39.71 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=31.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 100 vlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
.|.+|...||+.|+.....|.+...++. ..+.++-|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~~vd~~~ 41 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG-DAVEVEYINVME 41 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc-CceEEEEEeCcc
Confidence 4677889999999999999999887774 237777777653
No 120
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.44 E-value=0.06 Score=53.58 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=25.6
Q ss_pred CeEEEEEEcCCCChhhHHHHHHH---HhcHHHHHHCCCEEEEEeCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L---~~~~~~l~~~Gv~vV~Is~~ 139 (248)
++.|++.|...||+.|+..-... .+..++++ ++.++-|..+
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt 517 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVT 517 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECC
Confidence 45777788899999999865543 22333442 4555555543
No 121
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=95.43 E-value=0.032 Score=49.18 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=33.0
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
..+++.|+..||+.|+.....+.+..++++. .+.+..|..+..
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~ 95 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA 95 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc
Confidence 4567778899999999999999998888753 356666665544
No 122
>PTZ00102 disulphide isomerase; Provisional
Probab=95.29 E-value=0.023 Score=54.23 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=39.3
Q ss_pred CCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCC--CEEEEEeCCCH
Q 025756 91 SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV 141 (248)
Q Consensus 91 ~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~G--v~vV~Is~~~~ 141 (248)
.+...+.+.++++|...||+.|++....+.+....+++.+ +.+.-|.++..
T Consensus 43 ~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~ 95 (477)
T PTZ00102 43 DKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE 95 (477)
T ss_pred HHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC
Confidence 3444556788889999999999999999999888887654 66666666654
No 123
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.29 E-value=0.049 Score=42.09 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=32.4
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
+.+|+.|...||+.|+.....|.+...++. ++.++-|..+.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~ 65 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK 65 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh
Confidence 677888899999999999888888877763 56666666654
No 124
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.28 E-value=0.37 Score=40.34 Aligned_cols=32 Identities=13% Similarity=0.275 Sum_probs=24.6
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 213 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 213 G~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
+.+|+|++| +|.|.+.++ -...+++++++.++
T Consensus 127 aiiVlDK~G-~V~F~k~G~--Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 127 AIIVLDKQG-KVQFVKEGA--LSPAEVQQVIALLK 158 (160)
T ss_pred eEEEEcCCc-cEEEEECCC--CCHHHHHHHHHHHh
Confidence 478999998 999999774 44456778887765
No 125
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.15 E-value=0.07 Score=41.54 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
...+++||...||++|+....-|.+..++. ..++++.|..+.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~ 63 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDE 63 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCc
Confidence 445888889999999998888887776554 346677776654
No 126
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=94.91 E-value=0.1 Score=40.60 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=33.5
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
....+|+.|...||+.|+.....|.+...++ .++.++-|..+..
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~ 64 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKA 64 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccC
Confidence 3457888889999999999888888877665 3567777766653
No 127
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=94.65 E-value=0.14 Score=37.26 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=37.6
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhc--HHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~--~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
++.|+++|-..||+.|+..-..+-.. ..++-..++..|-|-.++.+....+.. .++|
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P 75 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYP 75 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSS
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCC
Confidence 34455555799999999998887553 333224778888888887765443333 4455
No 128
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.18 E-value=0.41 Score=42.93 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=51.8
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCe-EEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHH
Q 025756 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRK-AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~G~~v~l~~l~~~~~-vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~ 148 (248)
...-..|++.-.+.+|+.+++.+.+.++. +|.+|++.++=..+..+...+.+.+..-....+++|-|...+- .++.|+
T Consensus 96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~-~~k~~l 174 (252)
T PF05176_consen 96 DKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIEN-WLKSWL 174 (252)
T ss_pred HhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchH-HHHHHH
Confidence 44456899999999999999999987664 5666777666555555555333333222222799999997764 334443
No 129
>PTZ00102 disulphide isomerase; Provisional
Probab=94.07 E-value=0.073 Score=50.79 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=40.7
Q ss_pred EecCCCCeEeCCCc-cCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCC-CEEEEEeCCCH
Q 025756 80 VYDVNGNAIPISDL-WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSV 141 (248)
Q Consensus 80 L~d~~G~~v~l~~l-~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~G-v~vV~Is~~~~ 141 (248)
+....|+.+. +. .+.++.+|++|+..||+.|+.....|.+....++..+ +.++.|..+..
T Consensus 359 v~~l~~~~f~--~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~ 420 (477)
T PTZ00102 359 VKVVVGNTFE--EIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN 420 (477)
T ss_pred eEEecccchH--HHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC
Confidence 4444454433 22 2345678888889999999999999999887776543 55555665543
No 130
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=93.95 E-value=0.12 Score=38.58 Aligned_cols=43 Identities=5% Similarity=0.071 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
..++++|...||+.|......|.+...+++.. +.++.|..+..
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~ 55 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDF 55 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhh
Confidence 34566667899999999999999999998732 66666666553
No 131
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=93.95 E-value=0.16 Score=45.67 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=34.5
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
++.-+++||| ..||+|+.++.-|+...++ .|+.|++||.|..
T Consensus 150 ~~~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~ 191 (256)
T TIGR02739 150 QSYGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGT 191 (256)
T ss_pred hceeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC
Confidence 3577888888 6699999999988876654 6899999998864
No 132
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=93.78 E-value=0.18 Score=35.28 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=22.6
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
+.+|...|||+|++....| ++.|+..-.|..+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L-------~~~~~~~~~idi~~~ 35 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTL-------DKLGAAYEWVDIEED 35 (77)
T ss_pred EEEEECCCChhHHHHHHHH-------HHcCCceEEEeCcCC
Confidence 4578889999999866655 444555555555433
No 133
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=93.62 E-value=0.099 Score=41.22 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCC-CChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 96 DRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 96 ~~~vvlvF~R~~-~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
++++||.|++-+ +||.|+.....|.++..++... +.++-|..+.
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~ 71 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD 71 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC
Confidence 355555555544 6999999999888887776422 4455555554
No 134
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=93.61 E-value=0.1 Score=46.70 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 90 l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
+.++. ++.-|++||| ..||+|..++.-|+...++ .|+.|++||.|..
T Consensus 138 i~~la-~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~---yg~~v~~VS~DG~ 184 (248)
T PRK13703 138 IAKLA-EHYGLMFFYR-GQDPIDGQLAQVINDFRDT---YGLSVIPVSVDGV 184 (248)
T ss_pred HHHHH-hcceEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC
Confidence 34433 3578888888 6699999999999877654 6899999998864
No 135
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=93.49 E-value=0.38 Score=32.87 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=31.3
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH-HHHHHHHhhcC
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK 152 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~-~~~~~f~~~~~ 152 (248)
|.+|...|||+|+.....| ++.|+.+..|..++. +..+++.+.++
T Consensus 2 i~lf~~~~C~~C~~~~~~l-------~~~~i~~~~vdi~~~~~~~~~~~~~~~ 47 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYL-------TSKGIAFEEIDVEKDSAAREEVLKVLG 47 (74)
T ss_pred EEEEcCCCChhHHHHHHHH-------HHCCCeEEEEeccCCHHHHHHHHHHhC
Confidence 5788999999999865555 446788887876653 33455665554
No 136
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.12 Score=42.88 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=30.8
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
..-||+-|...||.+|+.-...|.+...++ +--+++.-|..|+
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~ 103 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDE 103 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEcccc
Confidence 455677788999999999999998887776 3334555555443
No 137
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=93.20 E-value=0.75 Score=36.33 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=43.7
Q ss_pred CCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 90 l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
|.++..++++||+|-...--+.=++++..|.+....|.+..+.|+.|..+..
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~ 54 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGA 54 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcc
Confidence 4455445679999999999999999999999999999999999998865543
No 138
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=93.03 E-value=1.1 Score=39.86 Aligned_cols=45 Identities=13% Similarity=0.331 Sum_probs=36.1
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCC---EEEEEeCCCH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGV---ALVLIGPGSV 141 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv---~vV~Is~~~~ 141 (248)
+.|+|+-+=.+.|.+|..++..|.++..+|+..|. ..++|...+.
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 45666666666999999999999999999998765 5777876654
No 139
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=93.02 E-value=0.13 Score=43.29 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=63.5
Q ss_pred CCCccccCcCCCcEEec-CCCCeEeCCCccC--CCeEEEEEEcCCCChhhHHHHHHHHhcHH-------HHHHC------
Q 025756 66 SVSEDTKNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKD-------VMDAS------ 129 (248)
Q Consensus 66 ~~~~~~g~~ap~f~L~d-~~G~~v~l~~l~~--~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~-------~l~~~------ 129 (248)
.....+|..+|+..|.. .||+++.|.+.+. ++.-|++|--..-.+-+...+..|.+..+ +|...
T Consensus 27 a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 27 AGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp BTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred ccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 35679999999999987 5999999998764 46789999888888777766776666442 33332
Q ss_pred CCEEEEEeCCCHHHH---------HHHHhhcCCCC------CC-----ChHHHHHcCCccc
Q 025756 130 GVALVLIGPGSVEQA---------RTFSEQTKFKG------DP-----NHSSYEALSFVSG 170 (248)
Q Consensus 130 Gv~vV~Is~~~~~~~---------~~f~~~~~fp~------Dp-----~~~~y~alGl~~~ 170 (248)
-++++.|.+.....+ +.|.+++++.+ |. ...+|+.||+.+.
T Consensus 107 ~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~~ 167 (169)
T PF07976_consen 107 VFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDRD 167 (169)
T ss_dssp SEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBTT
T ss_pred eeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCcC
Confidence 288999998864322 23333444433 33 5789999998654
No 140
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=92.84 E-value=0.26 Score=33.99 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=25.5
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
|.+|...|||+|......|.+.... ..++++.-|..++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id~~~ 40 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMIDAAE 40 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEEccc
Confidence 5677788999998877777665432 2356666665443
No 141
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.73 E-value=0.27 Score=41.50 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=31.9
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
..||+.|...||+.|+.....|.++..++. ++..+=|..+.
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~ 124 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA 124 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc
Confidence 378888889999999988888877776653 57777777664
No 142
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=92.66 E-value=0.28 Score=35.39 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=26.2
Q ss_pred EEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHH
Q 025756 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (248)
Q Consensus 103 F~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~ 143 (248)
.|...|||.|+.-...+.+..+++ |..+-.+-.++.+.
T Consensus 4 ~~~a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~~ 41 (76)
T TIGR00412 4 QIYGTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMNE 41 (76)
T ss_pred EEECCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHHH
Confidence 344699999999999888877664 44455555555443
No 143
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=92.61 E-value=0.24 Score=46.60 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC--CCEEEEEeCCCH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~--Gv~vV~Is~~~~ 141 (248)
.+..+|++|...||+.|+.....+.+...+++.. ++.++-|.++..
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence 4568899999999999999999999998888762 677777877643
No 144
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=92.35 E-value=0.36 Score=38.58 Aligned_cols=65 Identities=8% Similarity=0.143 Sum_probs=37.4
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHH-Hh--cHHHHHHCCCEEEEEeCCCH-HHHHHHHh-------hcCCCC----CCChH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYL-AA--KKDVMDASGVALVLIGPGSV-EQARTFSE-------QTKFKG----DPNHS 160 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L-~~--~~~~l~~~Gv~vV~Is~~~~-~~~~~f~~-------~~~fp~----Dp~~~ 160 (248)
+++.|+++|-..||+.|+..-... .+ ..+.+ ..+..+|-|..+.. +..+.+.+ ..++|. ||+.+
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 455677778999999999776533 32 23333 34566666665443 22232322 235775 88754
Q ss_pred H
Q 025756 161 S 161 (248)
Q Consensus 161 ~ 161 (248)
.
T Consensus 93 ~ 93 (124)
T cd02955 93 P 93 (124)
T ss_pred E
Confidence 3
No 145
>PHA02125 thioredoxin-like protein
Probab=92.18 E-value=0.56 Score=33.55 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.5
Q ss_pred EEEEcCCCChhhHHHHHHHHh
Q 025756 101 VAFARHFGCVLCRKRADYLAA 121 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~ 121 (248)
|+.|...||+.|+.-...|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 678899999999987777653
No 146
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.3 Score=44.82 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=33.7
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHH
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~ 143 (248)
.-||+.||+.||+.|+.-...|.+...+.+ -.+.++-|.+|....
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~-G~f~LakvN~D~~p~ 88 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-GKFKLAKVNCDAEPM 88 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHhC-CceEEEEecCCcchh
Confidence 356788899999999999999988877653 335666666665543
No 147
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=91.43 E-value=0.6 Score=37.23 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCeEEEEEE------cCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFA------RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~------R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
++++.|+|+ -..|||.|+..-.-+.+.... ...+..+|-|..|+.
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r 69 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDR 69 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCH
Confidence 356777777 336999999999999887766 345788888888875
No 148
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=91.26 E-value=0.55 Score=40.52 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=27.9
Q ss_pred CCCeEEEEEEc--CCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 95 KDRKAVVAFAR--HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 95 ~~~~vvlvF~R--~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
+.+..+++|+- +.||+.|+....-|.+..+++. ++++..|..+
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 33445555554 3999999998888888766663 3444455544
No 149
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=90.93 E-value=0.73 Score=37.02 Aligned_cols=62 Identities=15% Similarity=0.299 Sum_probs=45.8
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCCC----CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFKG----DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~ 169 (248)
+.+|-..+|+.|++....| ++.|+....|. +.+.+.+..+.+..+.++ ......|+.+|+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCc
Confidence 5688899999999876655 45566655554 333467888888874433 89999999999875
No 150
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=90.41 E-value=1.5 Score=44.20 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=51.2
Q ss_pred CCccccCcCCCcEEecC-CCCeEeCCCcc--CCCeEEEEEEcCCCChhhHHHHHHHHhcH--------HHHHHCC-----
Q 025756 67 VSEDTKNLLDTVKVYDV-NGNAIPISDLW--KDRKAVVAFARHFGCVLCRKRADYLAAKK--------DVMDASG----- 130 (248)
Q Consensus 67 ~~~~~g~~ap~f~L~d~-~G~~v~l~~l~--~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~--------~~l~~~G----- 130 (248)
...++|..+|++.+... +++++.|.+.+ .+++.||+|--..-.+.....+..|.+.. ..+...+
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 540 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDA 540 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCc
Confidence 45789999999999985 88888888755 45677888876666667766666665543 1222222
Q ss_pred -CEEEEEeCCCH
Q 025756 131 -VALVLIGPGSV 141 (248)
Q Consensus 131 -v~vV~Is~~~~ 141 (248)
+.++.|.....
T Consensus 541 ~~~~~~i~~~~~ 552 (634)
T PRK08294 541 VIDVRAIFQQPH 552 (634)
T ss_pred EEEEEEEecCCC
Confidence 56777777654
No 151
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=90.02 E-value=0.51 Score=36.35 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=39.2
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHh---cHHHHHHCCCEEEEEeCCCHHHHHHHHhhcC---CCC----CC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAA---KKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKG----DP 157 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~---~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~---fp~----Dp 157 (248)
+++.|++++-..||+.|+......=. ..+.+++ ..-.+.+...++ ...+|++.++ +|. ||
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~~~i~~ 85 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSS-EGQRFLQSYKVDKYPHIAIIDP 85 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCc-cHHHHHHHhCccCCCeEEEEeC
Confidence 46789999999999999988775333 2444433 455555555553 3455666553 776 88
No 152
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=89.76 E-value=1.1 Score=32.29 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=29.7
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT 151 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~ 151 (248)
|..|-..|||+|++--..|. +.|+....|..+..+....+.+.+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~~ 53 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAVT 53 (79)
T ss_pred EEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHHH
Confidence 45677899999998777764 567776667766554444554433
No 153
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=89.44 E-value=0.9 Score=39.17 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=26.8
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
++|++|..|...||++|..-...+.+...+ .-.+.++-|..+.
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~ 174 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANE 174 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCC
Confidence 468888889999999999665544443322 1234444444443
No 154
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=89.31 E-value=0.73 Score=34.45 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=30.4
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
++|+-|.+|-..||+.|..-..-+.+...+. .++++..|..+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~ 52 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGA 52 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhH
Confidence 5689999999999999997777666555443 24666666644
No 155
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=88.77 E-value=2.6 Score=35.22 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=47.2
Q ss_pred cCcCCCcEEecC-CCCeEeCCCccC--CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHH-------------HCCCEEEE
Q 025756 72 KNLLDTVKVYDV-NGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-------------ASGVALVL 135 (248)
Q Consensus 72 g~~ap~f~L~d~-~G~~v~l~~l~~--~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~-------------~~Gv~vV~ 135 (248)
|..+|++.|... +|+++.|.+.+. +++-|++|--..-++..+..+..|.+..+.-. ..=++++.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVVT 80 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEEE
Confidence 567888998884 899999988764 46678888666666666666666665432111 11256888
Q ss_pred EeCCCHH
Q 025756 136 IGPGSVE 142 (248)
Q Consensus 136 Is~~~~~ 142 (248)
|......
T Consensus 81 I~~~~~~ 87 (167)
T cd02979 81 IHAAPRR 87 (167)
T ss_pred EecCCcc
Confidence 8877653
No 156
>PRK12559 transcriptional regulator Spx; Provisional
Probab=88.74 E-value=1.9 Score=34.64 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=46.7
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCCC----CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFKG----DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~ 169 (248)
+.+|-..+|+.|++....| ++.|+....|. +-+.+.++.|.+..+++. ......|+.+|+..
T Consensus 2 i~iY~~~~C~~crkA~~~L-------~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWL-------EENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINI 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCc
Confidence 5688899999999876655 45566655444 445578999999866554 88889999999875
No 157
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=88.70 E-value=9.5 Score=33.96 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKK 123 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~ 123 (248)
+.+.+|+.|--.-||+|++...++.+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~ 143 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWV 143 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHh
Confidence 4567788888999999999998876643
No 158
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.59 E-value=1.6 Score=33.86 Aligned_cols=61 Identities=26% Similarity=0.443 Sum_probs=44.4
Q ss_pred EEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCCC----CCChHHHHHcCCcc
Q 025756 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFKG----DPNHSSYEALSFVS 169 (248)
Q Consensus 102 vF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~ 169 (248)
.+|-..+|+.|++...-|.+ .|+....|. +.+.+.++++.+..+.|. ......|+.+|+..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 70 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKD 70 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccc
Confidence 46788999999988776654 455544443 234567888988887665 77778999999873
No 159
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=88.55 E-value=1.5 Score=29.57 Aligned_cols=38 Identities=29% Similarity=0.560 Sum_probs=27.9
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~ 145 (248)
|+.|-..|||.|......| ++.|+..-.+..++.+..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~ 38 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAR 38 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHH
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHH
Confidence 4567789999999776655 6778888888777664333
No 160
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=88.19 E-value=3.5 Score=40.39 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=29.6
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEE
Q 025756 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFA 104 (248)
Q Consensus 67 ~~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~ 104 (248)
+....|..+|+..|. .+|+.+++.|+++.+.+||.|-
T Consensus 425 ~~~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~ 461 (547)
T PRK08132 425 GGPVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFG 461 (547)
T ss_pred CCCCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEec
Confidence 456789999999987 4677889999997777777664
No 161
>PTZ00062 glutaredoxin; Provisional
Probab=88.04 E-value=0.94 Score=39.37 Aligned_cols=38 Identities=8% Similarity=0.061 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is 137 (248)
..+|+||+..||+.|+..-.-|.++..++. .+..+-|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~ 55 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVN 55 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEc
Confidence 567999999999999987777777666542 34444443
No 162
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.82 E-value=1.8 Score=32.91 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=43.8
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC----CCHHHHHHHHhhcCCCC----CCChHHHHHcCCc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKG----DPNHSSYEALSFV 168 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~----~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~ 168 (248)
|.+|-..+|+.|++....|. +.|+....|.. .+.+.++++.+..+.+. ......|+.+|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~-------~~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLE-------EHGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred CEEEECCCCHHHHHHHHHHH-------HcCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence 35788899999998766664 45655444443 23567888888776443 7888999999986
No 163
>PRK06184 hypothetical protein; Provisional
Probab=87.75 E-value=4.7 Score=39.04 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=39.7
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccC-CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWK-DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 67 ~~~~~g~~ap~f~L~d~~G~~v~l~~l~~-~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
+....|..+|++.|.+.+|+.+++-+++. .+.+||.|--..+ ...++.|+.++.|+.+
T Consensus 384 ~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~~~~~---------------~~~~~~~~~~~~~~~~ 442 (502)
T PRK06184 384 GGLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGAA---------------AILARRGLRIHRVGDA 442 (502)
T ss_pred CCCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEecCCch---------------hhhhhcCceEEEeccc
Confidence 45678999999999888888888988886 4567776522111 0123557888777654
No 164
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=87.46 E-value=1.8 Score=34.65 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=36.9
Q ss_pred eEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHH-HHCCCEEEEEeC
Q 025756 87 AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVM-DASGVALVLIGP 138 (248)
Q Consensus 87 ~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l-~~~Gv~vV~Is~ 138 (248)
.+.+++- +.++.|..|--+.||+|++....+.+...++ +.-.+.++.+..
T Consensus 4 ~~~~G~~--~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNP--DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEES-T--TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeecCC--CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 4456663 5688999999999999999999999887776 444567766654
No 165
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=87.44 E-value=2.4 Score=32.95 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=46.1
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeC----CCHHHHHHHHhhcCCCC----CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKG----DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~----~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~ 169 (248)
+.+|-..+|+.|++....|. +.|+.+..|.. .+.+.+++|.+..+-+. ......|+.+|+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLE-------EHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc
Confidence 56788999999998776664 45666665553 23568889998774333 89999999999875
No 166
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=87.13 E-value=1.8 Score=30.75 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=28.6
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC-HHHHHHHH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFS 148 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~-~~~~~~f~ 148 (248)
|+.|-..|||+|++....|.+.. +. ..+.++-|..++ ...++++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l 46 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYL 46 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHH
Confidence 35567899999999888887754 11 125677776653 23444433
No 167
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=87.06 E-value=1.3 Score=38.02 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
..||+.|...||+.|+.....|.++..++. .++++-|..+
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 467778889999999998888888877763 4666666654
No 168
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=87.01 E-value=2.3 Score=30.87 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=28.9
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
|..|-..|||+|.+....|.+...+. .|+...-|..+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 56677889999999999998877553 477777766653
No 169
>smart00594 UAS UAS domain.
Probab=87.01 E-value=2.2 Score=33.40 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=40.8
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhc---HHHHHHCCCEEEEEeCCCHHHHHHHHhhc---CCCC----CCCh
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAK---KDVMDASGVALVLIGPGSVEQARTFSEQT---KFKG----DPNH 159 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~---~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~---~fp~----Dp~~ 159 (248)
+++.+++++-..||+.|+...++.=.. .+.+ +.+.-++.+...+.+. .++++.+ +||. ||+.
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 467889999999999999999875443 3344 3355555566556554 4555544 4775 6664
No 170
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=86.82 E-value=0.82 Score=44.79 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=46.8
Q ss_pred CCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC--CCEEEEEeCCCHHHHHHHHhhcC
Q 025756 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVEQARTFSEQTK 152 (248)
Q Consensus 90 l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~--Gv~vV~Is~~~~~~~~~f~~~~~ 152 (248)
+.++..+...+++-|-..||..|...++++.+....+++. .+.+.=|-+... ..++.++.
T Consensus 35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~ 96 (493)
T KOG0190|consen 35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYE 96 (493)
T ss_pred HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhc
Confidence 5666667778888889999999999999999999999987 566666665543 55555554
No 171
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=86.48 E-value=3.5 Score=27.86 Aligned_cols=42 Identities=14% Similarity=0.341 Sum_probs=26.4
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC-HHHHHHHHh
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSE 149 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~-~~~~~~f~~ 149 (248)
+.+|-..||+.|++....|. +.|+....|..+. .+..+.|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~-------~~~i~~~~~~i~~~~~~~~~~~~ 44 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLD-------ERGIPFEEVDVDEDPEALEELKK 44 (73)
T ss_pred EEEEeCCCChhHHHHHHHHH-------HCCCCeEEEeCCCCHHHHHHHHH
Confidence 45677789999998555444 4567666666654 333445554
No 172
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=85.78 E-value=1.4 Score=34.55 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=27.7
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEE
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~I 136 (248)
+.++.|+.|--++||+|+..-..+.+...+.. .++++.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEE
Confidence 35677788889999999999888877554432 2455543
No 173
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=85.32 E-value=1.4 Score=35.59 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=20.4
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhc
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAK 122 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~ 122 (248)
+++.|+++|-..||+.|+.--...-+.
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~ 48 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEH 48 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCC
Confidence 345566668889999999888876543
No 174
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=85.31 E-value=3.9 Score=35.47 Aligned_cols=54 Identities=24% Similarity=0.471 Sum_probs=42.3
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe-CCCHHHHHHHHhhcCCCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is-~~~~~~~~~f~~~~~fp~ 155 (248)
....+.+|.. ..|+.|-..+..+... ...+.|..|+ .++.+.++.|+.+++.|.
T Consensus 108 ~~~rlalFvk-d~C~~C~~~~~~l~a~-----~~~~Diylvgs~~dD~~Ir~WA~~~~Idp 162 (200)
T TIGR03759 108 GGGRLALFVK-DDCVACDARVQRLLAD-----NAPLDLYLVGSQGDDERIRQWANRHQIDP 162 (200)
T ss_pred CCCeEEEEeC-CCChHHHHHHHHHhcC-----CCceeEEEecCCCCHHHHHHHHHHcCCCH
Confidence 3457788888 8999999999999652 4467777777 566789999999987763
No 175
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=84.91 E-value=3.4 Score=28.84 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=25.3
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f 147 (248)
|..|-..|||+|.+....|. +.|+....+..+.....+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~~~~~~ 42 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDITGRSL 42 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCChhHHHH
Confidence 45567799999998866665 45666555555543333333
No 176
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=84.52 E-value=3.5 Score=30.55 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=18.9
Q ss_pred CccCCCeEEEEEEcC----CCChhhHHHHHHHHhc
Q 025756 92 DLWKDRKAVVAFARH----FGCVLCRKRADYLAAK 122 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~----~~Cp~C~~~l~~L~~~ 122 (248)
++.++.++|| |--+ .|||+|.+-...|.+.
T Consensus 3 ~~i~~~~vvv-f~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 3 KLIKENPVVL-FMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred hhhccCCEEE-EEcCCCCCCCCcHHHHHHHHHHHc
Confidence 4555555554 4443 6999999766666443
No 177
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=84.21 E-value=3.8 Score=31.92 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=44.1
Q ss_pred EEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC----CHHHHHHHHhhcCCCC----CCChHHHHHcCCc
Q 025756 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKG----DPNHSSYEALSFV 168 (248)
Q Consensus 102 vF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~----~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~ 168 (248)
.+|-..+|+.|++....|.+ .|+.+..|... +.+.+.++++..+... ......|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCch
Confidence 46788999999988777654 56666666543 3356778888777332 8899999999975
No 178
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=84.07 E-value=3.6 Score=28.88 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=27.7
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~ 148 (248)
|.+|-..+||+|++-...|. +.|+..-.|..+......+..
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~ 41 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYV 41 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHH
Confidence 35788899999998877775 467776666666443333333
No 179
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=1.5 Score=41.16 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=41.4
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
+....++.|-..||..|.+.+..+.++...++. -+.+..|.++....+.....-.+||-
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPt 104 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPT 104 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcE
Confidence 345677778899999999999999988777765 45566666665554444433344663
No 180
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=83.90 E-value=4.3 Score=32.64 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=46.0
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCCC----CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFKG----DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~ 169 (248)
+.+|-..+|+.|++....| ++.|+....|. +-+.+.++.|.+..+.++ ......|+.+|+..
T Consensus 2 i~iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWL-------NAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcch
Confidence 5577889999999865544 56677666654 335578999998876443 88889999999765
No 181
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=83.67 E-value=3.7 Score=31.05 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=26.2
Q ss_pred ccCCCeEEEEEEcC----CCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHH
Q 025756 93 LWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (248)
Q Consensus 93 l~~~~~vvlvF~R~----~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~ 145 (248)
+.++.+ |++|-.+ .|||+|.+-..-|.+ .|+....|..+....++
T Consensus 8 ~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~ 56 (97)
T TIGR00365 8 QIKENP-VVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIR 56 (97)
T ss_pred HhccCC-EEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHH
Confidence 344444 4556665 799999976666544 55555555544333333
No 182
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=82.74 E-value=4 Score=31.44 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=44.9
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCCC--CCChHHHHHcCCc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFKG--DPNHSSYEALSFV 168 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp~--Dp~~~~y~alGl~ 168 (248)
+.+|-..+|+-|++....|. +.|+..-.|. +-+.+.++.+.+..+..- ......|+.+|+.
T Consensus 1 i~iy~~~~C~~crka~~~L~-------~~~i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLE-------ARGVAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGTTWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HcCCCeEEEecccCCCCHHHHHHHHHHhChHHHHccCchHHHhCChh
Confidence 35788899999998776664 4565555544 335578999998877332 8888999999987
No 183
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=81.91 E-value=6.9 Score=27.39 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=27.6
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH-HHHHHHHhh
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQ 150 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~-~~~~~f~~~ 150 (248)
|..|-..+||.|++-...|. +.|+....|..+.. +..+++.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~ 46 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLR-------EKGLPYVEINIDIFPERKAELEER 46 (73)
T ss_pred EEEEecCCChhHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHH
Confidence 34566799999998776665 46777777766643 333344443
No 184
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=81.86 E-value=6.8 Score=27.19 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=27.7
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC-HHHHHHHHhh
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQ 150 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~-~~~~~~f~~~ 150 (248)
|.+|-..+||+|.+-...|.+ .|+..-.|..+. .+..+++.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~ 45 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINR 45 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHH
Confidence 457778999999987776654 566666665554 3444445443
No 185
>PRK10638 glutaredoxin 3; Provisional
Probab=81.42 E-value=5.4 Score=28.78 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=28.3
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHH-HHHHHHhhcC
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTK 152 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~-~~~~f~~~~~ 152 (248)
|.+|-..|||+|++-...|.+ .|+....|..+... ..+++.+..+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~g 49 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRSG 49 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHhC
Confidence 457778999999987776654 55665555554432 3345555443
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=79.38 E-value=6.1 Score=26.41 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=23.3
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~ 142 (248)
|..|-..|||+|++-...|.+ .|+.+.-+..+...
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~-------~~i~~~~~di~~~~ 36 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLES-------LGIEFEEIDILEDG 36 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCcEEEEECCCCH
Confidence 345667899999987766654 45666666655543
No 187
>PRK10329 glutaredoxin-like protein; Provisional
Probab=78.60 E-value=8.3 Score=28.14 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=27.1
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~ 146 (248)
|..|-..|||+|..--..| ++.|+..-.|-.+....+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~ 41 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAE 41 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHH
Confidence 4567789999999765555 56788877777765443333
No 188
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=77.74 E-value=3.4 Score=37.51 Aligned_cols=72 Identities=14% Similarity=0.006 Sum_probs=48.4
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHH
Q 025756 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (248)
Q Consensus 69 ~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~ 144 (248)
.+..+..|-|+|.|.+|+++-...--+++-+-++++|. -.....+.+|+...+++ +.+++|+.|+-|...++
T Consensus 76 ~ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~q---edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl 147 (270)
T TIGR00995 76 AKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQ---EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKL 147 (270)
T ss_pred HHHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCH---HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHH
Confidence 45566789999999999988887543333333444333 12445566666666666 47899999998877554
No 189
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.56 E-value=4 Score=32.77 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=30.8
Q ss_pred CCeEEEEEEcC-------CCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~-------~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
++.+.++|+-. .|||.|.....-+.+.... ...++.+|-|..|+.
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~-ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH-APEDVHFVHVYVGNR 76 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh-CCCceEEEEEEecCC
Confidence 34455555543 4999999988887776553 246778888888774
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=77.34 E-value=6 Score=28.85 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=27.9
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCE--EEEEeCCCHHHHHHHHhhc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQT 151 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~--vV~Is~~~~~~~~~f~~~~ 151 (248)
+..|-..+||+|.+--..|. +.|+. .|-|..++.+..+.++++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~ 48 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRG 48 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHh
Confidence 44566678999997666554 56665 4444555544676776654
No 191
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=77.25 E-value=3.4 Score=33.15 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
++.-++.+-..|||-|...++.|.+..+.- -++++=.|..|
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--p~i~~~~i~rd 81 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEAN--PNIEVRIILRD 81 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH---TTEEEEEE-HH
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhC--CCCeEEEEEec
Confidence 466777788999999999999999988763 26666666544
No 192
>PRK10824 glutaredoxin-4; Provisional
Probab=77.22 E-value=5.8 Score=31.34 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=20.1
Q ss_pred CccCCCeEEEEEEcC----CCChhhHHHHHHHHhc
Q 025756 92 DLWKDRKAVVAFARH----FGCVLCRKRADYLAAK 122 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~----~~Cp~C~~~l~~L~~~ 122 (248)
++.++.+ |++|-.+ .+||+|++-..-|.+.
T Consensus 10 ~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 10 RQIAENP-ILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred HHHhcCC-EEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 3444444 5666776 5999999877766554
No 193
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.05 E-value=3.7 Score=38.57 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=42.2
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHH-HCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~-~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
...++.|-..||+.|+..+..+.+....++ ..++.+..+.++....+....+-..||
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYP 220 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCc
Confidence 345556678999999999999999988887 478888888887444555554444455
No 194
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=76.77 E-value=7.7 Score=27.29 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=23.3
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
|++|-..|||+|..-...|.+... ..+.+=|..++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 356668999999988877776533 24455555443
No 195
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=75.92 E-value=5.6 Score=30.20 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=15.5
Q ss_pred cCCCeEEEEEEcCCCChhhHHHHHHHH
Q 025756 94 WKDRKAVVAFARHFGCVLCRKRADYLA 120 (248)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~~l~~L~ 120 (248)
+++.+++ + |-..|||+|++.-.-|.
T Consensus 5 i~~~~Vv-v-ysk~~Cp~C~~ak~~L~ 29 (99)
T TIGR02189 5 VSEKAVV-I-FSRSSCCMCHVVKRLLL 29 (99)
T ss_pred hccCCEE-E-EECCCCHHHHHHHHHHH
Confidence 4444443 3 44599999997665443
No 196
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=75.43 E-value=5 Score=33.89 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEE
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~I 136 (248)
.+..|+.|--..||+|++....+.+ ...+++|..+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~ 111 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIF 111 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEE
Confidence 4667777778999999999998877 2345554444
No 197
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=74.57 E-value=6.4 Score=34.62 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=28.2
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEE
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~I 136 (248)
+++..|+.|--..||+|++...+|.+. .+.|++|..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 356778888999999999988887654 3467887665
No 198
>PHA03050 glutaredoxin; Provisional
Probab=74.12 E-value=3.7 Score=31.89 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=17.8
Q ss_pred ccCCCeEEEEEEcCCCChhhHHHHHHHHh
Q 025756 93 LWKDRKAVVAFARHFGCVLCRKRADYLAA 121 (248)
Q Consensus 93 l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~ 121 (248)
+..+.+ |+.|-..|||+|++--.-|.+
T Consensus 9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 9 RLANNK--VTIFVKFTCPFCRNALDILNK 35 (108)
T ss_pred HhccCC--EEEEECCCChHHHHHHHHHHH
Confidence 344444 445678899999876666544
No 199
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=73.92 E-value=32 Score=33.65 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=43.7
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHH-hcHHHHHHCCCEEEEEeCCC
Q 025756 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLA-AKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 68 ~~~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~-~~~~~l~~~Gv~vV~Is~~~ 140 (248)
...+|+.+|+..|.+.+|....+.++.+.+.+||.| ++.. ...+. +....++..|+.+|.+.++.
T Consensus 410 ~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (538)
T PRK06183 410 HSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW----GCDP----LAGLSDEQRARWRALGARFVQVVPAV 475 (538)
T ss_pred CCCcccCcCCCeeEcCCCCcccchhccCCceEEEEe----cCCc----hhcCCHHHHHHHHHcCCeEEEEeccc
Confidence 346899999999988777666677788777888866 2211 11111 12234678899999988764
No 200
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=71.61 E-value=8.2 Score=32.79 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
.++.+-..+++++|+.+++||..+..+++.|++.+++||
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f 87 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF 87 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce
Confidence 456666778899999999999999999999999998876
No 201
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=71.29 E-value=7.6 Score=28.43 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=24.3
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
|..|-..|||+|.+....|.+...+. .++...-|..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECC
Confidence 56677889999998888877654332 24555555544
No 202
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=71.27 E-value=10 Score=27.39 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=31.9
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCC
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~f 153 (248)
|+||-..+|..|......|.+... +.++.+..|..++.+. +.+++++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~~---l~~~Y~~ 48 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDPE---LFEKYGY 48 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTHH---HHHHSCT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCHH---HHHHhcC
Confidence 678999999999988888876443 3447788887775433 4445553
No 203
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.74 E-value=4.2 Score=36.73 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=26.1
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVM 126 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l 126 (248)
+.+.|++-|-..||.+|..-+.-+++...++
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY 50 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKY 50 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhC
Confidence 3579999999999999999999888765554
No 204
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=70.72 E-value=6.1 Score=32.04 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEE
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV 134 (248)
+.++.|+.|--+.||+|+..-..+.+...+. ..++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 4577788888899999999999998877665 3345544
No 205
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=69.60 E-value=7.1 Score=38.41 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=32.3
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
.++-||+-|-..||+.|......+.++.+.++. .-.||.-=+|
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmD 425 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMD 425 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEec
Confidence 356778888899999999999999988888876 3344444444
No 206
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=68.54 E-value=20 Score=27.69 Aligned_cols=62 Identities=13% Similarity=0.321 Sum_probs=46.4
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCCC----CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFKG----DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~ 169 (248)
+.+|-...|.-|++.+..| ++.|+.+..|. +=+.+.++.+++..+.+. ......|+.+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L-------~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~ 70 (112)
T cd03034 1 ITIYHNPRCSKSRNALALL-------EEAGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLAD 70 (112)
T ss_pred CEEEECCCCHHHHHHHHHH-------HHCCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCc
Confidence 3577889999999876665 45566666654 234578999999888544 88889999999874
No 207
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=67.53 E-value=5.3 Score=28.29 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=26.8
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC-HHHHHHHHhhc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQT 151 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~-~~~~~~f~~~~ 151 (248)
|.+|-..+||+|.+-...|.+ .|+..-.+..+. ++..+++.+..
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~ 45 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRS 45 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHh
Confidence 356778999999987777754 455544444333 33445555443
No 208
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=66.55 E-value=23 Score=27.43 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=46.6
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCC----C-CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFK----G-DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp----~-Dp~~~~y~alGl~~ 169 (248)
+.+|-...|.-|++....|. +.|+.+..|. +=+.+.++.+++..+++ + ......|+.+|+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~ 71 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLE-------DKGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSD 71 (114)
T ss_pred CEEEECCCCHHHHHHHHHHH-------HCCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCc
Confidence 35788899999998777664 4566655554 33457899999988864 3 88889999999875
No 209
>PRK10853 putative reductase; Provisional
Probab=62.81 E-value=18 Score=28.48 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=47.1
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCCC--CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFKG--DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp~--Dp~~~~y~alGl~~ 169 (248)
+.+|-...|.-|++.+.-|. +.|+.+..|. +=+.+.++.|.+..+++- ......|+.+|+..
T Consensus 2 i~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~n~~~~~~r~L~~~~ 69 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLE-------AQGIDYRFHDYRVDGLDSELLQGFIDELGWEALLNTRGTTWRKLDETQ 69 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHH-------HcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHHhcCCchHHhCCHhH
Confidence 56888899999998777664 4577666665 335578999998877554 88888999988763
No 210
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=60.98 E-value=11 Score=26.47 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=25.5
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is 137 (248)
|.+|-.+.||+|...-..|.+.. +....+++++.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~-~~~~~~~~~~~~~ 36 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLL-YADDGGVRVVYRP 36 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHH-hhcCCcEEEEEec
Confidence 35677889999999999998876 2334456655443
No 211
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=58.59 E-value=40 Score=23.87 Aligned_cols=33 Identities=18% Similarity=0.435 Sum_probs=21.4
Q ss_pred CCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 106 ~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
+.+||.|..-+..+.+...++ |+++-.+-..+.
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~ 39 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDF 39 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTH
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCH
Confidence 677999997666666665554 566655554443
No 212
>PRK10026 arsenate reductase; Provisional
Probab=57.41 E-value=43 Score=27.37 Aligned_cols=63 Identities=13% Similarity=0.214 Sum_probs=47.0
Q ss_pred EEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe--CC--CHHHHHHHHhhcCCCC----CCChHHHHHcCCcc
Q 025756 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKG----DPNHSSYEALSFVS 169 (248)
Q Consensus 100 vlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is--~~--~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~ 169 (248)
-+.+|-...|.-|++.+.-|.+. |+.+..+- .+ +.+.++.|.+..+.+. -.....|+.+|+..
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAE 73 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCc
Confidence 36688899999999988777554 55544444 33 4578999999888654 67788999999865
No 213
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=56.60 E-value=19 Score=28.48 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=24.5
Q ss_pred CCCccCCCeEEEEEEcC--CCCh---hhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 90 ISDLWKDRKAVVAFARH--FGCV---LCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 90 l~~l~~~~~vvlvF~R~--~~Cp---~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
|.+..++.+.+|+-|-. .||. .|.+-+.++.+... .+.|.-|.+++
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d 61 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKD 61 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEeccc
Confidence 44455555666666667 6776 55544444433222 15555566643
No 214
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=55.10 E-value=38 Score=26.45 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCC----CChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHh---hcCCCC
Q 025756 96 DRKAVVAFARHF----GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE---QTKFKG 155 (248)
Q Consensus 96 ~~~vvlvF~R~~----~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~---~~~fp~ 155 (248)
+.+.+++++-.. ||.+|++-+.. .+..+-+ ..+.-+++....+.+. .+.+. -..||+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~l-n~~fv~w~~dv~~~eg-~~la~~l~~~~~P~ 79 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYI-NTRMLFWACSVAKPEG-YRVSQALRERTYPF 79 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHH-HcCEEEEEEecCChHH-HHHHHHhCCCCCCE
Confidence 456777777777 88999655531 1112222 3456566666666653 22333 335887
No 215
>PTZ00062 glutaredoxin; Provisional
Probab=53.49 E-value=14 Score=32.00 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCccCCCeEEEEEEcC----CCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHH
Q 025756 90 ISDLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (248)
Q Consensus 90 l~~l~~~~~vvlvF~R~----~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~ 148 (248)
+.++.+..| |++|-.+ .+||+|++-..-|.+ .|+....+-....+.+++..
T Consensus 106 v~~li~~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~~d~~~~~~l 160 (204)
T PTZ00062 106 IERLIRNHK-ILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIFEDPDLREEL 160 (204)
T ss_pred HHHHHhcCC-EEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcCCCHHHHHHH
Confidence 445555554 5666665 599999987776654 35554444444333444333
No 216
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.26 E-value=28 Score=30.10 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=36.1
Q ss_pred EEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHH
Q 025756 79 KVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD 127 (248)
Q Consensus 79 ~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~ 127 (248)
.....+++.+.+++... ++.++.|.-+-||+|++.+.+|.+.+-...
T Consensus 68 ~~~~~~~~~~~~G~~~~--~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 68 LYLTPDGKDVVLGNPYA--PVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred eeecCCCCcccccCCCC--CceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 34456777778888643 799999999999999999999888544433
No 217
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=51.13 E-value=42 Score=27.71 Aligned_cols=42 Identities=12% Similarity=0.257 Sum_probs=34.6
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHH
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~ 146 (248)
..=+++|+..-|.-|.++++.| +++|.+|=.+..++.+.+++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~d~~alK~ 66 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETDDFLALKR 66 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecCcHHHHHH
Confidence 4557889999999999998876 57899999999988766654
No 218
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=50.44 E-value=25 Score=27.23 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC
Q 025756 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (248)
Q Consensus 99 vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~ 139 (248)
.||+|-+ .|||+|.. +.+|- ...|+...+|-.|
T Consensus 15 ~VVifSK-s~C~~c~~-~k~ll------~~~~v~~~vvELD 47 (104)
T KOG1752|consen 15 PVVIFSK-SSCPYCHR-AKELL------SDLGVNPKVVELD 47 (104)
T ss_pred CEEEEEC-CcCchHHH-HHHHH------HhCCCCCEEEEcc
Confidence 4555666 99999997 55542 2255554444444
No 219
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=49.39 E-value=41 Score=31.41 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~ 129 (248)
--+|++.|-..||+|.+.-..-+.+..+.+++.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh
Confidence 357888999999999999999999988888654
No 220
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=46.78 E-value=26 Score=31.48 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=29.8
Q ss_pred CccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHC
Q 025756 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~ 129 (248)
++..++++.|+|.-..|||+|..+-=.|-....+|-..
T Consensus 53 d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 53 DLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred ccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 45567899999999999999998877777666665433
No 221
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=46.44 E-value=34 Score=27.75 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCceeeceEEEEeCCCCeEEEEEeCCCCCCCC
Q 025756 206 RGGWQQGGIIVAGPGKSNISYIHRDKEAGDDP 237 (248)
Q Consensus 206 ~~~~qlgG~fVvd~gg~~I~~~h~~~~~~Dh~ 237 (248)
|+....-|.|..++.|+.|.|.|.++. +.|+
T Consensus 89 GD~V~f~GeYe~n~kggvIHWTH~dp~-~~h~ 119 (131)
T PF11948_consen 89 GDQVEFYGEYEWNPKGGVIHWTHHDPR-GRHP 119 (131)
T ss_pred CCEEEEEEEEEECCCCCEEEeeccCCC-CCCC
Confidence 444678899999988889999999854 5555
No 222
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=42.86 E-value=18 Score=32.90 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=36.7
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccC-CCeEEEEEEcCCCChhhHHHHHHHHh----cHHHHHHCCCEEEEEeCCCHHHH
Q 025756 70 DTKNLLDTVKVYDVNGNAIPISDLWK-DRKAVVAFARHFGCVLCRKRADYLAA----KKDVMDASGVALVLIGPGSVEQA 144 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~G~~v~l~~l~~-~~~vvlvF~R~~~Cp~C~~~l~~L~~----~~~~l~~~Gv~vV~Is~~~~~~~ 144 (248)
+-.+..|-|.+.|.+|+++-+..--+ +..+.++|+ |++.+.++-+ ..+++ +.+++|+.|+.+...++
T Consensus 70 ~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 70 EKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQL 141 (274)
T ss_dssp HHHTTSEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHH
T ss_pred HHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHH
Confidence 44667899999999999987766321 345666664 5566555433 33344 68899999998776443
No 223
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=42.44 E-value=1.2e+02 Score=23.64 Aligned_cols=57 Identities=7% Similarity=0.077 Sum_probs=45.0
Q ss_pred HHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhc-CCCC--CCChHHHHHcCCccc
Q 025756 114 KRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-KFKG--DPNHSSYEALSFVSG 170 (248)
Q Consensus 114 ~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~-~fp~--Dp~~~~y~alGl~~~ 170 (248)
....-|+++.++|++.++.=++|..++.+.+++..+-. +.++ ...-.+.+.||+...
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~lapgl~l~P~sgddLa~rL~l~hY 94 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALAPGLPLLPVSGDDLAERLGLRHY 94 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCcccCCCHHHHHHHhCCCcc
Confidence 34566788899999999999999999998888887755 4666 667778888877644
No 224
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=41.90 E-value=46 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=30.1
Q ss_pred HHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCC
Q 025756 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (248)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~f 153 (248)
..+.+...++++.|+.++.++......++.+.+..++
T Consensus 27 ~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 27 PGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 4455667778888999999999998899998887764
No 225
>PHA00159 endonuclease I
Probab=39.98 E-value=35 Score=28.09 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=36.8
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC------CHHHHHHH
Q 025756 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------SVEQARTF 147 (248)
Q Consensus 74 ~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~------~~~~~~~f 147 (248)
-.|||.|.| |--+....+| -+--|.-+.-.++.++++ .+++|.-+.- +...-.+|
T Consensus 52 YTPDF~Lpn--GiiiEvKG~w--------------~~ddR~K~lli~eQ~P~l---diR~VFs~s~~klyKgSkTtYa~W 112 (148)
T PHA00159 52 YTPDFLLPN--GIIIETKGLW--------------DSDDRKKHLLIREQYPEL---DIRFVFSSSRTKLYKGSPTSYAEW 112 (148)
T ss_pred eCCceecCC--CCEEEecccC--------------ChHHHHHHHHHHHHCCCc---cEEEEEecCCchhhcCCCCcHHHH
Confidence 456776553 6555555544 344455555555556654 4666654433 23345689
Q ss_pred HhhcCCCC
Q 025756 148 SEQTKFKG 155 (248)
Q Consensus 148 ~~~~~fp~ 155 (248)
+++++|.+
T Consensus 113 c~khG~~~ 120 (148)
T PHA00159 113 CEKHGILF 120 (148)
T ss_pred HHHcCcch
Confidence 99999887
No 226
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=39.24 E-value=65 Score=22.94 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=28.1
Q ss_pred eeceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 210 QQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 210 qlgG~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
+.+|.|-|--+| +++|.-.. -+..|+.++|++.++
T Consensus 38 ~~~G~Fev~~~g-~~v~sk~~--~~~fp~~~~~~~~ir 72 (72)
T TIGR02174 38 PTTGAFEVTVNG-QLVWSKLR--GGGFPEPEELKQLIR 72 (72)
T ss_pred CCCcEEEEEECC-EEEEEecc--CCCCCCHHHHHHhhC
Confidence 467999887776 89988765 468999999998874
No 227
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=38.73 E-value=57 Score=29.61 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHh
Q 025756 110 VLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (248)
Q Consensus 110 p~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~ 149 (248)
.+=...+..|.+...+|.+.|.+||.|+.|....-..++.
T Consensus 27 ~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~ 66 (284)
T cd04256 27 GLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLR 66 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhh
Confidence 3445667777777778888999999999998866555554
No 228
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=38.72 E-value=11 Score=37.68 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=35.5
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHH--CCCEEEEEeCCCHH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGSVE 142 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~--~Gv~vV~Is~~~~~ 142 (248)
.++.-++-|-..||+-|+.++..+++....++. .=+.|-+|.|.+.+
T Consensus 56 ~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~ 104 (606)
T KOG1731|consen 56 SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE 104 (606)
T ss_pred cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh
Confidence 344566677789999999999999997777653 23567888888764
No 229
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=38.26 E-value=86 Score=24.36 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=43.3
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe--C--CCHHHHHHHHhhcCCCC--CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--P--GSVEQARTFSEQTKFKG--DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is--~--~~~~~~~~f~~~~~fp~--Dp~~~~y~alGl~~ 169 (248)
+.+|-...|.-|++....|. +.|+..-.|. . -+.+.++.+.+..++.- ......|+.++...
T Consensus 2 i~iy~~p~C~~crkA~~~L~-------~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~~l~n~~~~~~r~~~~~~ 69 (113)
T cd03033 2 IIFYEKPGCANNARQKALLE-------AAGHEVEVRDLLTEPWTAETLRPFFGDLPVAEWFNPAAPRVKSGEVVP 69 (113)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEeehhcCCCCHHHHHHHHHHcCHHHHHhcccHHHHhcCCCc
Confidence 45778899999998776654 4455544443 2 34578999998776433 77788898887764
No 230
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.16 E-value=48 Score=31.26 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=36.5
Q ss_pred hhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 111 LCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 111 ~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
.|..-..++......+.+.+.+||+|.--+.+.+++|++++++|
T Consensus 13 g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~ 56 (351)
T KOG2741|consen 13 GAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP 56 (351)
T ss_pred ehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC
Confidence 46667777777666666689999999999999999999999984
No 231
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=37.97 E-value=68 Score=25.25 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=46.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEE--Ee--CCCHHHHHHHHhhcCCCC----CCChHHHHHcCCcc
Q 025756 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVL--IG--PGSVEQARTFSEQTKFKG----DPNHSSYEALSFVS 169 (248)
Q Consensus 100 vlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~--Is--~~~~~~~~~f~~~~~fp~----Dp~~~~y~alGl~~ 169 (248)
.+.+|--.-|.-|++....| ++.|+..-. +. +-+.+.+.+|.+..+.++ ......|++||+..
T Consensus 2 ~itiy~~p~C~t~rka~~~L-------~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~~ 72 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWL-------EEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLDK 72 (117)
T ss_pred eEEEEeCCCChHHHHHHHHH-------HHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCcc
Confidence 36788888999999776655 566666533 33 445688999999988655 88889999999543
No 232
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=37.76 E-value=1.1e+02 Score=26.76 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=35.1
Q ss_pred CccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCE-EEEEeC
Q 025756 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVA-LVLIGP 138 (248)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~-vV~Is~ 138 (248)
+.+.+.-+||--|+..|...-..+......+...++..|+. +++|+.
T Consensus 58 ~~l~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGG 105 (211)
T COG2910 58 SDLAGHDAVISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGG 105 (211)
T ss_pred hhhcCCceEEEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcC
Confidence 33445568888888888777777888888888899988876 555553
No 233
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=37.55 E-value=53 Score=24.82 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=15.0
Q ss_pred CCCChhhHHHHHHHHhc
Q 025756 106 HFGCVLCRKRADYLAAK 122 (248)
Q Consensus 106 ~~~Cp~C~~~l~~L~~~ 122 (248)
-..||+|+.++..+.+.
T Consensus 4 Dg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 4 DGDCPLCRREVRFLRRR 20 (114)
T ss_pred CCCCHhHHHHHHHHHhc
Confidence 46899999999999877
No 234
>PRK05578 cytidine deaminase; Validated
Probab=37.21 E-value=18 Score=29.09 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=26.9
Q ss_pred CCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 106 ~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
..=|..||+.+.++.. .+++|+..+.+.........+-+++.|
T Consensus 83 ~sPCG~CRQ~l~e~~~-------~~~~v~l~~~~~~~~~~~l~eLLP~~f 125 (131)
T PRK05578 83 LSPCGRCRQVLAEFGG-------PDLLVTLVAKDGPTGEMTLGELLPYAF 125 (131)
T ss_pred cCccHHHHHHHHHhCC-------CCcEEEEEcCCCCEEEEEHHHhCcCcC
Confidence 3579999999888842 367777766665333333444445544
No 235
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=37.19 E-value=28 Score=31.49 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=16.4
Q ss_pred hcHHHHHHCCCEEEEEeCCCH
Q 025756 121 AKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 121 ~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
....++++.|+.++.|..+++
T Consensus 185 ~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 185 VRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHcCCeEEEEEEcCC
Confidence 335677888999999988876
No 236
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=36.17 E-value=44 Score=27.09 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=28.6
Q ss_pred hcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 121 ~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
+...++++.|++++.||.+....++.+++..+++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 44455678899999999998889999998887763
No 237
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=36.11 E-value=21 Score=28.38 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=27.6
Q ss_pred CCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 107 ~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
.-|+.|++.+.++.. .++.|+....+.........+-++++|
T Consensus 81 sPCG~Crq~l~e~~~-------~~~~v~~~~~~~~~~~~~l~eLLP~~f 122 (127)
T TIGR01354 81 SPCGACRQVLAEFAG-------PDTPIYMTNNDGTYKVYTVGELLPFGF 122 (127)
T ss_pred CccHHHHHHHHHhCC-------CCcEEEEECCCCCEEEEEHHHhCcCcC
Confidence 689999999988842 357777777766433334444455555
No 238
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=34.61 E-value=58 Score=28.15 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=30.4
Q ss_pred HhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 120 ~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
.+....+++.|.+++.||.+....++.+++.++++.
T Consensus 83 ~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 83 EELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred HHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 344567789999999999998889999999998876
No 239
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=34.34 E-value=52 Score=22.77 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.6
Q ss_pred EEEcCCCChhhHHHHHHHHh
Q 025756 102 AFARHFGCVLCRKRADYLAA 121 (248)
Q Consensus 102 vF~R~~~Cp~C~~~l~~L~~ 121 (248)
.+|-..+||+|++-...|.+
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 45666889999987766643
No 240
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=33.75 E-value=61 Score=25.35 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=26.8
Q ss_pred eeeceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 209 WQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 209 ~qlgG~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
.+.|+++| +.+|..|...|-...+..|+++..|.++.+
T Consensus 19 ~pvGaviv-~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~ 56 (115)
T cd01284 19 PPVGCVIV-DDDGEIVGEGYHRKAGGPHAEVNALASAGE 56 (115)
T ss_pred CCEEEEEE-eCCCeEEEEecCCCCCcccHHHHHHHHHhh
Confidence 45666544 655545666777667889999999988765
No 241
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=33.31 E-value=37 Score=23.79 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=27.8
Q ss_pred EEcCCCChhhHHHHHHHHhcHHHHHHCCC--EEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 103 FARHFGCVLCRKRADYLAAKKDVMDASGV--ALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 103 F~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv--~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
-.|+.-||.=- -.+++..+++ +.|- .|++=.+.+.+.+..|+++.++.+
T Consensus 3 D~~G~~CP~P~---i~~k~~l~~l-~~G~~l~V~~dd~~s~~di~~~~~~~g~~~ 53 (69)
T cd03423 3 DTRGLRCPEPV---MMLHKKVRKM-KPGDTLLVLATDPSTTRDIPKFCTFLGHEL 53 (69)
T ss_pred cccCCcCCHHH---HHHHHHHHcC-CCCCEEEEEeCCCchHHHHHHHHHHcCCEE
Confidence 45778888621 2222223333 2343 344444555578999999998776
No 242
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=32.52 E-value=40 Score=25.98 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=27.3
Q ss_pred HHHhcHHHHHHCCCEEEEEeCCCH--HHHHHHHhhcCCCC-CCChHH
Q 025756 118 YLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQTKFKG-DPNHSS 161 (248)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Is~~~~--~~~~~f~~~~~fp~-Dp~~~~ 161 (248)
+..+..+..++.++.+|+|+++.+ ..+...+++.+++. -|+++.
T Consensus 50 d~~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfGP~k~a 96 (100)
T PF02844_consen 50 DPEELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFGPSKEA 96 (100)
T ss_dssp -HHHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES--HHH
T ss_pred CHHHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEECcCHHH
Confidence 344445555688899999999987 45666666677765 554443
No 243
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=32.37 E-value=1.7e+02 Score=24.01 Aligned_cols=57 Identities=5% Similarity=0.058 Sum_probs=44.5
Q ss_pred HHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhc-CCCC--CCChHHHHHcCCccc
Q 025756 114 KRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-KFKG--DPNHSSYEALSFVSG 170 (248)
Q Consensus 114 ~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~-~fp~--Dp~~~~y~alGl~~~ 170 (248)
.....|+++.++|++.|+.=++|..++.+.++...+-- +.++ ...-.+.+.||+...
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~lapgl~l~P~sgddLA~rL~l~HY 132 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLAPGLPLLPVSGDDLARRLGLSHY 132 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCeecCCCHHHHHHHhCCCcc
Confidence 44566788999999999999999999999888887754 4555 666677777777643
No 244
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=31.18 E-value=1.2e+02 Score=29.62 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=39.2
Q ss_pred ccCCCeEEEEEEcCC-CChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHH--HHHHHHh
Q 025756 93 LWKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE--QARTFSE 149 (248)
Q Consensus 93 l~~~~~vvlvF~R~~-~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~--~~~~f~~ 149 (248)
++++|+++|+-=|.+ -.|.-|++. +....+.++++|-.|++|++|++. .+..+.+
T Consensus 463 llEeR~Ilv~DEWAADQDPaFRR~F--Y~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~ 520 (546)
T COG4615 463 LLEERDILVLDEWAADQDPAFRREF--YQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520 (546)
T ss_pred HHhhCCeEEeehhhccCChHHHHHH--HHHHhHHHHHhCCeEEEEecCchhhhhHHHHHH
Confidence 345788888776664 556555544 345688899999999999999983 4555544
No 245
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=31.11 E-value=73 Score=29.82 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=32.9
Q ss_pred CChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 108 ~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
||.+.+.++..+.+..+ ++++++|.--+.+.+++++++++++.
T Consensus 10 G~~~G~~h~~al~~~~~-----~~eLvaV~d~~~erA~~~A~~~gi~~ 52 (343)
T TIGR01761 10 GTRFGQFYLAAFAAAPE-----RFELAGILAQGSERSRALAHRLGVPL 52 (343)
T ss_pred eHHHHHHHHHHHHhCCC-----CcEEEEEEcCCHHHHHHHHHHhCCCc
Confidence 45566666666655321 69999999999999999999988765
No 246
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=30.68 E-value=1.5e+02 Score=24.11 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=29.9
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
|.||--+-||+|-.....|.+...+.....+...-+.....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 67888999999999999999988777333444444544443
No 247
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=30.53 E-value=55 Score=22.41 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=15.4
Q ss_pred EEEcCCCChhhHHHHHHHHhc
Q 025756 102 AFARHFGCVLCRKRADYLAAK 122 (248)
Q Consensus 102 vF~R~~~Cp~C~~~l~~L~~~ 122 (248)
.+|-..+||+|++-...|.+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~ 22 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA 22 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc
Confidence 356778999999876666543
No 248
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=29.87 E-value=1.1e+02 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=22.7
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
|..|-..|||+|.+.-.-|. +.|+.-..|..+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~ 37 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFG-------ANDIPFTQISLDDD 37 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCeEEEECCCC
Confidence 55678899999997665554 45666555555433
No 249
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=29.70 E-value=37 Score=25.93 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=26.0
Q ss_pred CCChhhHHHHHHHHhcHHHHHHCCCEEEEEe
Q 025756 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (248)
Q Consensus 107 ~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is 137 (248)
.+||-|..=+.+.++....|++- ++||++.
T Consensus 5 ~gCPG~v~CfKA~ne~~g~Fe~y-v~viaf~ 34 (101)
T COG5561 5 YGCPGEVRCFKAANEGEGKFEEY-VRVIAFI 34 (101)
T ss_pred cCCCchHHHHHHHhccccccccc-EEEEEEE
Confidence 58999999999999998888776 8888775
No 250
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=29.59 E-value=29 Score=24.84 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=27.0
Q ss_pred eeceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 210 QQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 210 qlgG~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
..+|.|-|.-+| +++|.-.. .+..|+.++|+++++
T Consensus 40 ~~~G~FEV~v~g-~lI~SK~~--~g~fP~~~~i~~~I~ 74 (76)
T PF10262_consen 40 GSTGAFEVTVNG-ELIFSKLE--SGRFPDPDEIVQLIR 74 (76)
T ss_dssp ESTT-EEEEETT-EEEEEHHH--HTSSS-HHHHHHHHH
T ss_pred ccCCEEEEEEcc-EEEEEehh--cCCCCCHHHHHHHHh
Confidence 568899988887 88887654 669999999999886
No 251
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=29.25 E-value=1.1e+02 Score=24.42 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=28.6
Q ss_pred HHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
+.+....+++.|..+++||.+....++.+++.++++
T Consensus 78 ~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 78 ARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred HHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 344456777899999999999888888888877654
No 252
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=29.22 E-value=1.5e+02 Score=23.49 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=43.4
Q ss_pred EEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEe----CCCHHHHHHHHhhcCCCC--CCChHHHHHcCCcc
Q 025756 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG----PGSVEQARTFSEQTKFKG--DPNHSSYEALSFVS 169 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is----~~~~~~~~~f~~~~~fp~--Dp~~~~y~alGl~~ 169 (248)
+.+|-...|.-|++....|. +.|+.+-.+. +=+.+.++.|.+..++.- ......|+.++...
T Consensus 3 i~iY~~p~Cst~RKA~~~L~-------~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~~lin~~~~~~r~l~~~~ 70 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALK-------ASGHDVEVQDILKEPWHADTLRPYFGNKPVGSWFNRAAPRVKSGEVNP 70 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCcEEEeccCCCcCHHHHHHHHHHcCHHHHHhccchHhhhCCCCc
Confidence 45778899999998776664 5566655554 234578999998875332 56667888888543
No 253
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=28.88 E-value=53 Score=23.02 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=15.5
Q ss_pred EEEEcCCCChhhHHHHHHHHh
Q 025756 101 VAFARHFGCVLCRKRADYLAA 121 (248)
Q Consensus 101 lvF~R~~~Cp~C~~~l~~L~~ 121 (248)
+.+|-..+||+|++-...|.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred ceEecCCCCchHHHHHHHHHH
Confidence 456777899999977666644
No 254
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.87 E-value=97 Score=26.08 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=48.7
Q ss_pred cCCCcEEecCCCCeEeCCC--ccCCC-eEEEEEEcCCCChhhHHHH-HHHHhcHHHHHHCCC--EEEEEeCC-------C
Q 025756 74 LLDTVKVYDVNGNAIPISD--LWKDR-KAVVAFARHFGCVLCRKRA-DYLAAKKDVMDASGV--ALVLIGPG-------S 140 (248)
Q Consensus 74 ~ap~f~L~d~~G~~v~l~~--l~~~~-~vvlvF~R~~~Cp~C~~~l-~~L~~~~~~l~~~Gv--~vV~Is~~-------~ 140 (248)
..|++.+.|.. .+++.. |.+.+ +.||+-+=.+-++.=..++ .++.+...++++.+. +|+.||.. +
T Consensus 17 ~~P~l~V~si~--~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~ 94 (168)
T PF09419_consen 17 LLPHLYVPSIR--DIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPD 94 (168)
T ss_pred cCCCEEcCChh--hCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCcc
Confidence 46777777663 344444 54443 4555555444443333332 456666777777766 49999987 3
Q ss_pred HHHHHHHHhhcCCCC
Q 025756 141 VEQARTFSEQTKFKG 155 (248)
Q Consensus 141 ~~~~~~f~~~~~fp~ 155 (248)
.+.++.+.+.++.|+
T Consensus 95 ~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 95 GERAEALEKALGIPV 109 (168)
T ss_pred HHHHHHHHHhhCCcE
Confidence 567888888877664
No 255
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=28.85 E-value=1.1e+02 Score=21.11 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=24.5
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 213 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 213 G~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
=.|.||++| +|.-..+....++..=-++++++++
T Consensus 20 v~~~I~~~G-~v~~~~v~~s~~~~~l~~~a~~~v~ 53 (79)
T PF03544_consen 20 VEFTIDPDG-RVSDVRVIQSSGPPILDEAALRAVK 53 (79)
T ss_dssp EEEEEETTT-EEEEEEEEEESSSSCSHHHHHHHHC
T ss_pred EEEEEeCCC-CEEEEEEEEccCHHHHHHHHHHHHH
Confidence 378999998 9998888766665533456666664
No 256
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=28.74 E-value=1.3e+02 Score=24.62 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=26.3
Q ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 123 ~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
...+++.|..++.|+.+....++.+++..+++
T Consensus 96 l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 96 IRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred HHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 44567899999999988888889998877765
No 257
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=28.62 E-value=84 Score=21.42 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=22.1
Q ss_pred EEEEeCCCCeEEEEEeCCCCCCCCCHH-HHHHHhh
Q 025756 214 IIVAGPGKSNISYIHRDKEAGDDPDIQ-DILKACC 247 (248)
Q Consensus 214 ~fVvd~gg~~I~~~h~~~~~~Dh~~i~-eIL~al~ 247 (248)
.|.|+++| +|......+..+ ++.++ +++++++
T Consensus 15 ~~~i~~~G-~v~~~~i~~ssg-~~~ld~~a~~av~ 47 (74)
T TIGR01352 15 RFTVDADG-RVTSVSVLKSSG-DEALDRAALEAVR 47 (74)
T ss_pred EEEECCCC-CEEEEEEEEcCC-ChhHHHHHHHHHH
Confidence 78999998 898888865554 34443 4566554
No 258
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=28.58 E-value=1.2e+02 Score=24.58 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=39.1
Q ss_pred CeEEEEEEcCCC-------ChhhHHH-HHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 97 RKAVVAFARHFG-------CVLCRKR-ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 97 ~~vvlvF~R~~~-------Cp~C~~~-l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
.+++.+|+.... .+.-... ...|.+...+|++.|+.++++..+..+.+.+++++++..
T Consensus 25 ~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 90 (165)
T PF00875_consen 25 DPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT 90 (165)
T ss_dssp SEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES
T ss_pred CCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC
Confidence 466655543322 3333333 346777889999999999999988888888998877633
No 259
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=28.42 E-value=2.2e+02 Score=21.51 Aligned_cols=54 Identities=22% Similarity=0.410 Sum_probs=37.6
Q ss_pred CCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC----CHHHHHHHHhhcCCCC----CCChHHHHHcC
Q 025756 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKG----DPNHSSYEALS 166 (248)
Q Consensus 106 ~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~----~~~~~~~f~~~~~fp~----Dp~~~~y~alG 166 (248)
...|.-|++.+..| ++.|+.+..|..- +.+.+.++++..+..+ ......|+.+|
T Consensus 3 ~~~C~t~rka~~~L-------~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 3 NPNCSTCRKALKWL-------EENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp -TT-HHHHHHHHHH-------HHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred CCCCHHHHHHHHHH-------HHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 45799998776655 6788888888764 3478889999887433 89999999999
No 260
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=28.42 E-value=72 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=25.6
Q ss_pred cCCCeEEEEEEcCCCChhhHHHHHHHHh
Q 025756 94 WKDRKAVVAFARHFGCVLCRKRADYLAA 121 (248)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~~l~~L~~ 121 (248)
|.++|++++-|-+.|-.-|+.++++..-
T Consensus 116 W~gKPalivSyGGhGGg~c~~qL~~v~~ 143 (199)
T KOG4530|consen 116 WAGKPALIVSYGGHGGGRCQYQLRQVGV 143 (199)
T ss_pred hcCCceEEEEecCCCCchHHHHHHHHHh
Confidence 8889999999999999999999988754
No 261
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.41 E-value=1.3e+02 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=21.4
Q ss_pred HHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 113 RKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 113 ~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
.++...|.++...+++.|+.+|.+++..
T Consensus 90 ~~~~~nl~~ii~~~~~~~~~~il~tp~~ 117 (198)
T cd01821 90 TTYKEYLRRYIAEARAKGATPILVTPVT 117 (198)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 3466677777888889999999988653
No 262
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.19 E-value=1.8e+02 Score=22.14 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=32.5
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
+.-+++++-..|.. .++.+..+..++.|+.+|+|..++ .+.+++++.+++
T Consensus 43 ~~dl~I~iS~SG~t------~e~i~~~~~a~~~g~~iI~IT~~~--~l~~~~~~~~~~ 92 (119)
T cd05017 43 RKTLVIAVSYSGNT------EETLSAVEQAKERGAKIVAITSGG--KLLEMAREHGVP 92 (119)
T ss_pred CCCEEEEEECCCCC------HHHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHHcCCc
Confidence 34677777777742 333444445567899999999765 367777766533
No 263
>PRK12411 cytidine deaminase; Provisional
Probab=28.03 E-value=31 Score=27.83 Aligned_cols=42 Identities=19% Similarity=0.042 Sum_probs=24.2
Q ss_pred CCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 107 ~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
.=|..||+.+.++.. .++.|+....+.........+-+++.|
T Consensus 84 sPCG~CRQ~l~Ef~~-------~~~~v~i~~~~~~~~~~~l~eLLP~~f 125 (132)
T PRK12411 84 PPCGACRQVMVELCK-------QDTKVYLSNLHGDVQETTVGELLPGAF 125 (132)
T ss_pred CCchhHHHHHHHhCC-------CCcEEEEEcCCCCEEEEEHHHhCcCcC
Confidence 469999999888743 245666655544322233344445554
No 264
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=27.80 E-value=1.2e+02 Score=33.12 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=50.5
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC----CHHHHHHHHhhc------------CCCC--CC--
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQT------------KFKG--DP-- 157 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~----~~~~~~~f~~~~------------~fp~--Dp-- 157 (248)
.+.|+|+|..|..-+...+.+| ..+|++.|+.+|.|.+. ..+.++.|.... .|.. .+
T Consensus 73 ~VgIlfyrs~~~~g~~~~vdaL---I~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~~~~~ 149 (1098)
T PF02514_consen 73 TVGILFYRSYWLSGNTAVVDAL---IRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGGGPAG 149 (1098)
T ss_pred EEEEEeehhhhhcCCcHHHHHH---HHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCccccCCCCcc
Confidence 4678999999988887777766 56678899999999954 335677776541 1333 22
Q ss_pred -ChHHHHHcCCcc
Q 025756 158 -NHSSYEALSFVS 169 (248)
Q Consensus 158 -~~~~y~alGl~~ 169 (248)
..++++.+|++-
T Consensus 150 ~~~~~L~~LnVPV 162 (1098)
T PF02514_consen 150 GAIELLKELNVPV 162 (1098)
T ss_pred hhHHHHHHCCCCE
Confidence 578999999975
No 265
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=27.48 E-value=1.1e+02 Score=23.27 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=23.8
Q ss_pred eeeceEEEEeCCCCeEEEEEeCC-----CCCCCCCHHHHHHHhh
Q 025756 209 WQQGGIIVAGPGKSNISYIHRDK-----EAGDDPDIQDILKACC 247 (248)
Q Consensus 209 ~qlgG~fVvd~gg~~I~~~h~~~-----~~~Dh~~i~eIL~al~ 247 (248)
.+.|+ .|++++| +|+..-++. ++..|+++..|.++.+
T Consensus 17 ~~vga-viv~~~~-~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~ 58 (109)
T cd01285 17 VPFGA-VIVDDDG-KVIARGHNRVEQDGDPTAHAEIVAIRNAAR 58 (109)
T ss_pred CcEEE-EEEeCCC-EEEEEEeCCCCCCCCCcccHHHHHHHHHHH
Confidence 44554 5567665 665544443 3789999988887653
No 266
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=27.37 E-value=93 Score=26.43 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChhhHHHHHHH---HhcHHHHHHCCCEEEE
Q 025756 97 RKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVL 135 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L---~~~~~~l~~~Gv~vV~ 135 (248)
.+. |+-|-.+.||.|...-..| ......+ ..|+.++-
T Consensus 38 ~~~-VvEffdy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~~ 77 (207)
T PRK10954 38 EPQ-VLEFFSFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMTK 77 (207)
T ss_pred CCe-EEEEeCCCCccHHHhcccccchHHHHHhC-CCCCeEEE
Confidence 344 5566689999999876644 3333333 34555543
No 267
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=27.02 E-value=95 Score=21.66 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=27.2
Q ss_pred EEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCC--CHHHHHHHHhhcCCCC
Q 025756 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKFKG 155 (248)
Q Consensus 103 F~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~--~~~~~~~f~~~~~fp~ 155 (248)
-.|+.-||.= +-.+++..+++ +.|-.+.++.-+ +.+.+..|++.+++.+
T Consensus 3 D~rG~~CP~P---vl~~kkal~~l-~~G~~l~V~~d~~~a~~di~~~~~~~G~~~ 53 (69)
T cd03420 3 DACGLQCPGP---ILKLKKEIDKL-QDGEQLEVKASDPGFARDAQAWCKSTGNTL 53 (69)
T ss_pred ccCCCcCCHH---HHHHHHHHHcC-CCCCEEEEEECCccHHHHHHHHHHHcCCEE
Confidence 4577788862 12222223333 234444444433 3367899999988765
No 268
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=26.45 E-value=2.8e+02 Score=25.38 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=45.6
Q ss_pred EEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEE-eCCCHHHHHHHHhhcCCCC-----------CCChHHHHHcCC
Q 025756 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG-----------DPNHSSYEALSF 167 (248)
Q Consensus 100 vlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~I-s~~~~~~~~~f~~~~~fp~-----------Dp~~~~y~alGl 167 (248)
+++.-|-.--. . .-+.+--++...+.++|+..|.| ++.+.+.+++|.+..+.|+ ..+.+-.+++|+
T Consensus 151 ~~IiARTDa~~-~-~g~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv 228 (292)
T PRK11320 151 FVIMARTDALA-V-EGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGV 228 (292)
T ss_pred eEEEEecCccc-c-cCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCC
Confidence 55556643211 1 12344444566778899998887 4566789999998776554 235677888999
Q ss_pred cccc
Q 025756 168 VSGV 171 (248)
Q Consensus 168 ~~~~ 171 (248)
..-.
T Consensus 229 ~~v~ 232 (292)
T PRK11320 229 AMVL 232 (292)
T ss_pred cEEE
Confidence 8654
No 269
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=26.25 E-value=1.4e+02 Score=22.82 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=28.6
Q ss_pred HHHhcHHHHHHCCCEEEEEeCCC--------HHHHHHHHhhcCCC
Q 025756 118 YLAAKKDVMDASGVALVLIGPGS--------VEQARTFSEQTKFK 154 (248)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Is~~~--------~~~~~~f~~~~~fp 154 (248)
...+....|++.|+.++.++... .+.++++.+.++++
T Consensus 29 ~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 29 EVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 44556778889999999999988 66777777776654
No 270
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=26.16 E-value=59 Score=29.63 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=15.5
Q ss_pred EEcCCCChhhHHH--HHHHHhcHHHH
Q 025756 103 FARHFGCVLCRKR--ADYLAAKKDVM 126 (248)
Q Consensus 103 F~R~~~Cp~C~~~--l~~L~~~~~~l 126 (248)
.++|.|||-|=.. +..+.+...++
T Consensus 5 ~~~~~~CpGCg~~~i~~~~~~a~~~l 30 (280)
T PRK11869 5 KYDIAWCPGCGNFGIRNALMKALSEL 30 (280)
T ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHc
Confidence 3689999999643 44555555444
No 271
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=26.15 E-value=1.3e+02 Score=23.38 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=26.0
Q ss_pred hcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcC
Q 025756 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (248)
Q Consensus 121 ~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~ 152 (248)
+...++++.|+.+++++..+.+.++...+.++
T Consensus 84 ~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 84 ELLERLKAKGIPLVIVSNGSRERIERVLERLG 115 (176)
T ss_dssp HHHHHHHHTTSEEEEEESSEHHHHHHHHHHTT
T ss_pred hhhhhcccccceeEEeecCCcccccccccccc
Confidence 34556778999999999999888888887776
No 272
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=26.00 E-value=1.5e+02 Score=18.83 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=19.7
Q ss_pred EEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC
Q 025756 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (248)
Q Consensus 103 F~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~ 140 (248)
+|-..+||+|++-...|... ....+++-|..+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~ 35 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGE 35 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCC
Confidence 45567799999766665544 2224555555443
No 273
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=24.78 E-value=1e+02 Score=25.13 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=29.1
Q ss_pred HHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCC
Q 025756 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (248)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~f 153 (248)
+..+...+|+++|++++.++.|+...+...++..++
T Consensus 131 ~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 131 GAKEALQELKEAGIKVAILTGDNESTASAIAKQLGI 166 (215)
T ss_dssp THHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTS
T ss_pred hhhhhhhhhhccCcceeeeecccccccccccccccc
Confidence 345556778889999999999988888888887754
No 274
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=24.76 E-value=1.4e+02 Score=24.88 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=26.5
Q ss_pred cHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 122 KKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 122 ~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
....+++.|..++.|+.+....++.+.+..+++
T Consensus 93 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 93 LVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 345667789999999999988888888877654
No 275
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=24.72 E-value=18 Score=33.81 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=25.8
Q ss_pred cEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHH
Q 025756 78 VKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRAD 117 (248)
Q Consensus 78 f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~ 117 (248)
++..|.+|+.|.+-+.+.+. +.- .+.||.|-.++.
T Consensus 2 ltA~~~ngq~v~ll~~~~k~--~~~---~ffCPaC~~~l~ 36 (342)
T COG4469 2 LTAKDENGQTVNLLTALQKT--QLQ---RFFCPACGSQLI 36 (342)
T ss_pred ceeecCCCCEEEehhhHHHh--hhh---ccccCCCCCeee
Confidence 57789999999998866432 222 488999987654
No 276
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.39 E-value=1.6e+02 Score=22.06 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=31.7
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHh
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~ 149 (248)
..+++++-..+.. .++.+..+..++.|+.+|+|.......+.++.+
T Consensus 61 ~~~~i~iS~~g~~------~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d 106 (139)
T cd05013 61 GDVVIAISFSGET------KETVEAAEIAKERGAKVIAITDSANSPLAKLAD 106 (139)
T ss_pred CCEEEEEeCCCCC------HHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcC
Confidence 3566666666654 344455566778899999999877666666655
No 277
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=24.21 E-value=90 Score=26.30 Aligned_cols=32 Identities=9% Similarity=0.315 Sum_probs=25.3
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025756 213 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 247 (248)
Q Consensus 213 G~fVvd~gg~~I~~~h~~~~~~Dh~~i~eIL~al~ 247 (248)
++.|+|++| +|.|.+-+ .-...++.+++..+.
T Consensus 149 aivVlDk~G-~VkfvkeG--aLt~aevQ~Vi~ll~ 180 (184)
T COG3054 149 AVVVLDKDG-RVKFVKEG--ALTQAEVQQVIDLLQ 180 (184)
T ss_pred eEEEEcCCC-cEEEEecC--CccHHHHHHHHHHHH
Confidence 688999998 99999976 556677778877653
No 278
>PRK06848 hypothetical protein; Validated
Probab=23.95 E-value=51 Score=26.81 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=24.4
Q ss_pred CCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCCC
Q 025756 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 107 ~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
.=|..||+.+.++. .+..|+..+.+. .......+-++|.|
T Consensus 95 ~PCG~CRQvl~E~~--------~~~~v~v~~~~~-~~~~~l~eLLP~~f 134 (139)
T PRK06848 95 SPCGACRELISDYG--------KNTNVIVPYNDE-LVKVNIMELLPNKY 134 (139)
T ss_pred CCChhhHHHHHHhC--------CCCEEEEECCCC-eEEEEHHHhCcccc
Confidence 46999999988762 256666665554 22333444556655
No 279
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=23.64 E-value=1.7e+02 Score=24.53 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=32.0
Q ss_pred CeEEEEEEcCCCChhhHHHHHHHHhc--HHHHHHCCCEEEEEeCCCHHHHHHHH--------hhcCCCC----CCChHHH
Q 025756 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFS--------EQTKFKG----DPNHSSY 162 (248)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~~l~~L~~~--~~~l~~~Gv~vV~Is~~~~~~~~~f~--------~~~~fp~----Dp~~~~y 162 (248)
.+.|++.+-..||..|.....+-=+. ..++-....--|-|..+....+.... ..-|||. +|+.+.+
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 46777788899999999877643322 22222334445556666544444322 1335886 8887654
No 280
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=22.98 E-value=59 Score=32.66 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=38.8
Q ss_pred eCCCccCCCe--EEEEEEcCCCChhhHHHHHHH-HhcHHHHHHCCCEEEEEeCCC-HHHHHHHHhhcC
Q 025756 89 PISDLWKDRK--AVVAFARHFGCVLCRKRADYL-AAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK 152 (248)
Q Consensus 89 ~l~~l~~~~~--vvlvF~R~~~Cp~C~~~l~~L-~~~~~~l~~~Gv~vV~Is~~~-~~~~~~f~~~~~ 152 (248)
.+.+++.+.+ .|++.|-..||.-|++.-+.. ++....++..|+.++=+.--. ...++++.++++
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~ 531 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLG 531 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcC
Confidence 3444444444 778888899999999765543 345566666777655444222 235566666554
No 281
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=22.92 E-value=3.7e+02 Score=24.29 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHHHhcHHHHHHC-CCEEEEEeCCCHHHHHHHHhhcCCCC---------CCChHHHHHcCCccccccccCchhhHHHHHH
Q 025756 117 DYLAAKKDVMDAS-GVALVLIGPGSVEQARTFSEQTKFKG---------DPNHSSYEALSFVSGVLVTFTPKAGLKIIQS 186 (248)
Q Consensus 117 ~~L~~~~~~l~~~-Gv~vV~Is~~~~~~~~~f~~~~~fp~---------Dp~~~~y~alGl~~~~~~~~~P~a~~~~~k~ 186 (248)
.+|.+...+|.+. +..|+.||.=+.+.++.|..-.++.+ +++.+.|+.... ......++.
T Consensus 43 ~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i~l~aehGa~~r~~~g~~~~~~~~----------~~~~~~~~~ 112 (266)
T COG1877 43 DRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGIGLIAEHGAEVRDPNGKWWINLAE----------EADLRWLKE 112 (266)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCccEEEecceEEecCCCCeeEecCH----------HHHhhHHHH
Confidence 4555666666555 44577777778888998887443432 444443332222 221121112
Q ss_pred HHhhhhhhccccccccccCCCceeeceEEEEeCCCCeEEEEEeCCCCCC
Q 025756 187 YMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGD 235 (248)
Q Consensus 187 ~~~g~~~~~~~~~~g~~~~~~~~qlgG~fVvd~gg~~I~~~h~~~~~~D 235 (248)
....++. +. -..||.||-+++- -+.|.|+.....+
T Consensus 113 v~~~l~~-----~v--------~r~pGs~iE~K~~-a~~~Hyr~a~~~~ 147 (266)
T COG1877 113 VAAILEY-----YV--------ERTPGSYIERKGF-AVALHYRNAEDDE 147 (266)
T ss_pred HHHHHHH-----Hh--------hcCCCeEEEEcCc-EEEEeeccCCchh
Confidence 2211110 01 1467999999874 8888887654433
No 282
>PLN02311 chalcone isomerase
Probab=22.79 E-value=1.8e+02 Score=26.52 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=48.9
Q ss_pred CcccccccccCCceeeecccCCCCceeeccCCCCCCC-ccccCCcccccCCCCCceeeecccCCCCC--CCccccCcCCC
Q 025756 1 MAISLSTALSPNTTVRFNRLTNPAPTRILPNQSPLWR-PRHWNKTLKLSPRRPSHVIASAVSESPPS--VSEDTKNLLDT 77 (248)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~ap~ 77 (248)
||.|++.|-. .+.++--.+.|+-++..+|.-+.+.. |.-.+.-.+--.+-++.+-|+..|..++. ..++.|-+.|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~TgV~Fp~ 79 (271)
T PLN02311 1 LRMSCRNTDN-AESIYHFPGKSPNRVSVLQTGNTVSDSPNSLLKHRHCNEISRVIVKSAAFSVGSAEYAEETATSVKFQR 79 (271)
T ss_pred CCcccccchh-hhheeecCCCCCCCceEcccCCcccccccccccccccCcccceeeeccccccCcccceecCCcCCcCCc
Confidence 5667777766 66666667888889999998777766 43322222222233323335555544433 33455555665
Q ss_pred cEEecCCCCeEeCCC
Q 025756 78 VKVYDVNGNAIPISD 92 (248)
Q Consensus 78 f~L~d~~G~~v~l~~ 92 (248)
..-....+++..|..
T Consensus 80 ~v~~~~~s~~L~LnG 94 (271)
T PLN02311 80 SLTLPGCSSPLSLLG 94 (271)
T ss_pred cccCCCCCCceeEee
Confidence 432222235555543
No 283
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.66 E-value=1.9e+02 Score=21.70 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=30.6
Q ss_pred EEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHHHHHHHh
Q 025756 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (248)
Q Consensus 99 vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~ 149 (248)
.+|+++-..+ +-.++.+....+++.|+.+|+|.......+.++.+
T Consensus 55 d~vi~is~sg------~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad 99 (131)
T PF01380_consen 55 DLVIIISYSG------ETRELIELLRFAKERGAPVILITSNSESPLARLAD 99 (131)
T ss_dssp EEEEEEESSS------TTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS
T ss_pred ceeEeeeccc------cchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCC
Confidence 4444444444 23555555567789999999999877777777764
No 284
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=22.44 E-value=2.4e+02 Score=20.98 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=37.2
Q ss_pred hcHHHHHHCCCEEEEEeCCCH----HHHHHHHhhcCCCC---CCChHHHHHcCCccc
Q 025756 121 AKKDVMDASGVALVLIGPGSV----EQARTFSEQTKFKG---DPNHSSYEALSFVSG 170 (248)
Q Consensus 121 ~~~~~l~~~Gv~vV~Is~~~~----~~~~~f~~~~~fp~---Dp~~~~y~alGl~~~ 170 (248)
+....++.-.+.+|.|..|-. ..+...+++.+.|+ |...++-++.|+..+
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcgi~V~ 76 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVN 76 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCcC
Confidence 344555566678888887754 34566778888888 999999999999855
No 285
>PF14968 CCDC84: Coiled coil protein 84
Probab=22.32 E-value=21 Score=33.49 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.9
Q ss_pred cCCCChhhHHHHHHH
Q 025756 105 RHFGCVLCRKRADYL 119 (248)
Q Consensus 105 R~~~Cp~C~~~l~~L 119 (248)
+.+||+||..++.+.
T Consensus 57 ~~fWC~fC~~ev~~~ 71 (336)
T PF14968_consen 57 NRFWCVFCDCEVREH 71 (336)
T ss_pred ceeEeeCccchhhhc
Confidence 458999999999876
No 286
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=22.29 E-value=1.3e+02 Score=21.87 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=31.5
Q ss_pred eEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCE--EEEEeCCCHHHHHHHHhhcCCCC
Q 025756 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTKFKG 155 (248)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~--vV~Is~~~~~~~~~f~~~~~fp~ 155 (248)
+...+-.|+.-||.=- -.+++..+++ +.|-. |++=.+++.+.+..|++..++.+
T Consensus 8 ~~~~lD~~Gl~CP~Pl---l~~kk~l~~l-~~G~~l~V~~dd~~~~~di~~~~~~~G~~~ 63 (81)
T PRK00299 8 PDHTLDALGLRCPEPV---MMVRKTVRNM-QPGETLLIIADDPATTRDIPSFCRFMDHEL 63 (81)
T ss_pred cCeEEecCCCCCCHHH---HHHHHHHHcC-CCCCEEEEEeCCccHHHHHHHHHHHcCCEE
Confidence 4456788999999822 1222222233 23433 33333445578899999887765
No 287
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=22.08 E-value=1.4e+02 Score=23.94 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred cHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 122 KKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 122 ~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
..++|++.|+++..++......++...+.++++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 467778899999999999988888888888765
No 288
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=21.96 E-value=2.1e+02 Score=22.82 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=25.0
Q ss_pred HHhcHHHHHHCCCEEEEEeCCCHH---------------HHHHHHhhcCCCC
Q 025756 119 LAAKKDVMDASGVALVLIGPGSVE---------------QARTFSEQTKFKG 155 (248)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Is~~~~~---------------~~~~f~~~~~fp~ 155 (248)
..+...++++.|..|+.++.=+.. ...+|++++++|+
T Consensus 29 ~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY 80 (126)
T TIGR01689 29 VIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY 80 (126)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC
Confidence 334455566789999988854432 4567888777776
No 289
>TIGR00035 asp_race aspartate racemase.
Probab=21.94 E-value=1.5e+02 Score=25.58 Aligned_cols=54 Identities=6% Similarity=0.080 Sum_probs=38.0
Q ss_pred HHHHHHhcHHHHHHCCCEEEEEeCCCHHH-HHHHHhhcCCCC----CCChHHHHHcCCc
Q 025756 115 RADYLAAKKDVMDASGVALVLIGPGSVEQ-ARTFSEQTKFKG----DPNHSSYEALSFV 168 (248)
Q Consensus 115 ~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~-~~~f~~~~~fp~----Dp~~~~y~alGl~ 168 (248)
-...+.+....|++.|++.|+|.|-+... +.+..+..+.|+ |+.-+..+..|..
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~~ 118 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGVK 118 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCCC
Confidence 45567777888899999999999998754 455555567776 6665555555544
No 290
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=21.94 E-value=3.7e+02 Score=24.64 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=45.7
Q ss_pred EEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEE-eCCCHHHHHHHHhhcCCCC-----------CCChHHHHHcCC
Q 025756 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG-----------DPNHSSYEALSF 167 (248)
Q Consensus 100 vlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~I-s~~~~~~~~~f~~~~~fp~-----------Dp~~~~y~alGl 167 (248)
+++.-|-..=. ..-+.+--++...+.++|+..|.| +..+.+.++++.+..+.|+ ..+.+-.+++|+
T Consensus 150 ~~I~ARTDa~~--~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~ 227 (294)
T TIGR02319 150 FTIIARTDARE--SFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGY 227 (294)
T ss_pred eEEEEEecccc--cCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCC
Confidence 55666643211 012333444466677899999998 4567789999999766553 346778888998
Q ss_pred cccc
Q 025756 168 VSGV 171 (248)
Q Consensus 168 ~~~~ 171 (248)
..-.
T Consensus 228 ~~v~ 231 (294)
T TIGR02319 228 NLAI 231 (294)
T ss_pred cEEE
Confidence 8654
No 291
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=21.63 E-value=98 Score=28.82 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=29.9
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEE---EcCCC
Q 025756 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAF---ARHFG 108 (248)
Q Consensus 70 ~~g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF---~R~~~ 108 (248)
.+.+.|..+.|.+.+|++++..+|-.+..+++.+ -||||
T Consensus 325 tiLQNAETIkLv~~dG~pvSV~eLk~GD~vlv~~ee~aRHFG 366 (376)
T COG1465 325 TILQNAETIKLVNPDGEPVSVAELKPGDEVLVYLEEKARHFG 366 (376)
T ss_pred EEeccceeEEEEcCCCcEeeeEecCCCCEEEEEehhccchhc
Confidence 4456677889999999999999987666666655 35655
No 292
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=21.34 E-value=2.3e+02 Score=26.47 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=40.1
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCC--HHHHHHHHh
Q 025756 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSE 149 (248)
Q Consensus 72 g~~ap~f~L~d~~G~~v~l~~l~~~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~--~~~~~~f~~ 149 (248)
-+.+..+++++..|+..--.. ..++|++-++ ..+-+++.|+++++++++. +..+++|.+
T Consensus 37 ~a~a~t~Ti~~a~g~~~vpkn---PekVvv~D~g----------------aLD~ld~lGve~~~v~~~~~~P~yL~~y~~ 97 (320)
T COG4607 37 SAAAATVTVKHALGETVVPKN---PEKVVVLDLG----------------ALDTLDALGVEVVAVGPGKNLPAYLQKYKD 97 (320)
T ss_pred hccCceEEeeccCCcccccCC---CceEEEecch----------------hhhhHHHhCCccccccCCCCccHHHHHhcc
Confidence 445667888988885432222 3457666543 3567899999999997554 367778876
Q ss_pred h
Q 025756 150 Q 150 (248)
Q Consensus 150 ~ 150 (248)
.
T Consensus 98 d 98 (320)
T COG4607 98 D 98 (320)
T ss_pred C
Confidence 4
No 293
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=21.26 E-value=1.7e+02 Score=19.55 Aligned_cols=19 Identities=16% Similarity=-0.050 Sum_probs=14.1
Q ss_pred EEcCCCChhhHHHHHHHHh
Q 025756 103 FARHFGCVLCRKRADYLAA 121 (248)
Q Consensus 103 F~R~~~Cp~C~~~l~~L~~ 121 (248)
.|-..+||+|++-...|.+
T Consensus 3 ly~~~~~~~~~~v~~~l~~ 21 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAE 21 (73)
T ss_pred EEECCCChhHHHHHHHHHH
Confidence 5667789999987766643
No 294
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=21.10 E-value=36 Score=27.93 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.0
Q ss_pred eccC-CCCCCCccccCCc
Q 025756 28 ILPN-QSPLWRPRHWNKT 44 (248)
Q Consensus 28 ~~~~-~~~~~~~~~~~~~ 44 (248)
|+|- +|.-|||+|.|+-
T Consensus 65 v~kMvmSIGwNP~Y~N~~ 82 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKK 82 (153)
T ss_pred ceeEEEEcccCcccCCcc
Confidence 6665 8999999998864
No 295
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=20.80 E-value=2.6e+02 Score=22.81 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCHHH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~~~ 143 (248)
+.++|++-|-+.|-|.|.+.=.-|.+..++++.. +.+.+|-.+....
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vpd 65 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVPD 65 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTHC
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccchh
Confidence 4689999999999999997777777777777543 6666777665443
No 296
>PHA00003 B internal scaffolding protein
Probab=20.76 E-value=35 Score=26.84 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEcCCCChhhHHHHHHHHhcHHHHHHCCCEE
Q 025756 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVAL 133 (248)
Q Consensus 102 vF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~v 133 (248)
+|-|+|||..|-+.- .++|+.|+..+..|
T Consensus 73 ~c~RrFGgAtcddks---a~iya~FD~~d~rV 101 (120)
T PHA00003 73 ICARRFGGATCDDKS---AKIYAQFDPNDRRV 101 (120)
T ss_pred HHHHHcCCCCcchHH---HHHhcccCccccee
Confidence 578999999998654 45677787665543
No 297
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=20.70 E-value=4.5e+02 Score=21.49 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=33.2
Q ss_pred CCeEEEEEEcCCCChhhHHHHHHHHhcHHHHHHCCCEEEEEeCCCH
Q 025756 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (248)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~~l~~L~~~~~~l~~~Gv~vV~Is~~~~ 141 (248)
..++||+-|-+.|-|.|-..=.-|++..+.+... +.|..|-.++.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~IylvdideV 66 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDIDEV 66 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecchh
Confidence 3579999999999999998877888887777532 44555555543
No 298
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=20.59 E-value=2e+02 Score=23.30 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=26.5
Q ss_pred hcHHHHHHCCCEEEEEeCCCHHHHHHHHhhcCCC
Q 025756 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (248)
Q Consensus 121 ~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~~~~fp 154 (248)
+....+++.|+.++.||.+....++...+.+++.
T Consensus 87 e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 87 ELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred HHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 3455667889999999998888888888777643
No 299
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=20.50 E-value=1.3e+02 Score=20.61 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=18.9
Q ss_pred ceeeceEEEEeCCCCeEEEEEeCCC
Q 025756 208 GWQQGGIIVAGPGKSNISYIHRDKE 232 (248)
Q Consensus 208 ~~qlgG~fVvd~gg~~I~~~h~~~~ 232 (248)
.+--+++||+|.+ .-.|.|.+++
T Consensus 14 ~L~s~~~yIld~~--~~i~vW~G~~ 36 (76)
T PF00626_consen 14 SLNSDDCYILDCG--YEIFVWVGKK 36 (76)
T ss_dssp GEETTSEEEEEES--SEEEEEEHTT
T ss_pred HcCCCCEEEEEeC--CCcEEEEecc
Confidence 3667789999975 5899999987
No 300
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.33 E-value=1.9e+02 Score=21.69 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=22.4
Q ss_pred HhcHHHHHHCCCEEEEEeCCCHHHHHHHHh---hcCCCC
Q 025756 120 AAKKDVMDASGVALVLIGPGSVEQARTFSE---QTKFKG 155 (248)
Q Consensus 120 ~~~~~~l~~~Gv~vV~Is~~~~~~~~~f~~---~~~fp~ 155 (248)
.+..+.+++.|..++.++..+...-+.+.+ ..+|+.
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 345667788999999999887644444443 444544
No 301
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=20.18 E-value=95 Score=20.75 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=15.5
Q ss_pred EEEcCCCChhhHHHHHHHHhc
Q 025756 102 AFARHFGCVLCRKRADYLAAK 122 (248)
Q Consensus 102 vF~R~~~Cp~C~~~l~~L~~~ 122 (248)
.+|...+|++|++-...|.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 357778999999877666544
Done!