BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025758
(248 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225439256|ref|XP_002263213.1| PREDICTED: probable replication factor C subunit 3 [Vitis vinifera]
gi|296089274|emb|CBI39046.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/252 (87%), Positives = 238/252 (94%), Gaps = 4/252 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD +IVH D+AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMA+LRQ+FG
Sbjct: 1 MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P A+KVKVENKTWKIDAG+R IDLELTTLSS +H+EL+P DAGFQDRY+VQE+IKEMAKN
Sbjct: 61 PSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+GF+VLVLNEVD+LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLNIRIN+PTEEQI KVLEFIAKKEGLQLPSGFATR+AEKSNRSLRRAILSFETCRVQQ
Sbjct: 181 CLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQY 240
Query: 241 RFT----MPSVD 248
FT MP +D
Sbjct: 241 PFTNNQAMPPMD 252
>gi|224146053|ref|XP_002325862.1| predicted protein [Populus trichocarpa]
gi|222862737|gb|EEF00244.1| predicted protein [Populus trichocarpa]
Length = 353
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/252 (87%), Positives = 235/252 (93%), Gaps = 4/252 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLDQVIVHQ+IA+NLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1 MLWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
AEKVKVEN+TWKIDAGSR IDLELTTLSS NHVELSPSD GFQDRY+VQE+IKEMAKN
Sbjct: 61 TSAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN+P EEQIVKVLEFI KKEGLQLP GFA R+A+KSNRSLRRAILSFETCRVQQ
Sbjct: 181 CLNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQY 240
Query: 241 RFT----MPSVD 248
F+ +P +D
Sbjct: 241 PFSSNQAIPPMD 252
>gi|359806894|ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycine max]
gi|255645652|gb|ACU23320.1| unknown [Glycine max]
Length = 354
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/252 (85%), Positives = 238/252 (94%), Gaps = 4/252 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLDQV+VH DIA+NLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1 MLWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PGAEKVKV+N+TWK+DAGSR++DLELTTLSSANH+E+SPSDAGFQDRY+VQEVIKEMAKN
Sbjct: 61 PGAEKVKVDNRTWKVDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN+P+EEQIV+VLEFI KKEGLQLP GFA R+ EKSNR+LRRAILSFETCRVQQ
Sbjct: 181 CLNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQY 240
Query: 241 RF----TMPSVD 248
F T+P +D
Sbjct: 241 PFTNKQTIPPMD 252
>gi|388499612|gb|AFK37872.1| unknown [Lotus japonicus]
Length = 354
Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/252 (85%), Positives = 238/252 (94%), Gaps = 4/252 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLDQV+VH D+AQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1 MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
AEKVKVEN+TWK+DAGSR+IDLELTTLSSA+H+E+SPSDAGFQDRYVVQE+IKEMAKN
Sbjct: 61 TAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLNIRIN+P+EEQIV+V+EFI KKEGLQ+PSGFA R+AEKSNR+LRRAILSFETCRVQQ
Sbjct: 181 CLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY 240
Query: 241 RF----TMPSVD 248
F T+P +D
Sbjct: 241 PFTNRQTIPPMD 252
>gi|356511754|ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
Length = 354
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/252 (86%), Positives = 236/252 (93%), Gaps = 4/252 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLDQV+VH DIA NLKKLVTEQD PHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1 MLWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PGAEKVKVEN+TWKIDAGSR++DLELTTLSSANH+E+SPSDAGFQDRY+VQEVIKEMAKN
Sbjct: 61 PGAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN+P+EEQIV+VLEFI KKEGLQLP GFA R+AEKSNR+LRRAILSFETCRV Q
Sbjct: 181 CLNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQY 240
Query: 241 RFT----MPSVD 248
FT +P +D
Sbjct: 241 PFTNKQAIPPMD 252
>gi|449453820|ref|XP_004144654.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]
gi|449521275|ref|XP_004167655.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]
Length = 354
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/252 (84%), Positives = 234/252 (92%), Gaps = 4/252 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLDQ+ VHQD+AQNLKKLV EQDCPHLLFYGP GSGKKTL+MAL+RQ+FG
Sbjct: 1 MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P A+KVKVENKTWK+DAG+R ID+ELTTLSSANHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61 PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID+KGKRG KVLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN PTEEQI KVLE+I KKEGLQLPSGFA+R+AEKSNRSLRRAILSFETCRVQQ
Sbjct: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
Query: 241 RF----TMPSVD 248
F +P +D
Sbjct: 241 PFVSNQAIPPMD 252
>gi|388511555|gb|AFK43839.1| unknown [Medicago truncatula]
Length = 354
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/252 (83%), Positives = 234/252 (92%), Gaps = 4/252 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD +VH DIAQNLKKLVTE DCPHLLFYGP G+GKKTLIMALLRQ+FG
Sbjct: 1 MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PGAEKVKVEN+ WK+DAGSR+IDLELTTLSSANH+E++PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61 PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRL+LCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN+P+EEQIV+VL+FI KKEGLQLPS A R+AEKSNR+LRRAILSFETCRVQQ
Sbjct: 181 CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQY 240
Query: 241 RF----TMPSVD 248
F T+P +D
Sbjct: 241 PFTDKQTIPPMD 252
>gi|217071788|gb|ACJ84254.1| unknown [Medicago truncatula]
Length = 262
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/252 (83%), Positives = 234/252 (92%), Gaps = 4/252 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD +VH DIAQNLKKLVTE DCPHLLFYGP G+GKKTLIMALLRQ+FG
Sbjct: 1 MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PGAEKVKVEN+ WK+DAGSR+IDLELTTLSSANH+E++PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61 PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRL+LCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN+P+EEQIV+VL+FI KKEGLQLPS A R+AEKSNR+LRRAILSFETCRVQQ
Sbjct: 181 CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQY 240
Query: 241 RF----TMPSVD 248
F T+P +D
Sbjct: 241 PFTDKQTIPPMD 252
>gi|297812933|ref|XP_002874350.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
gi|297320187|gb|EFH50609.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 359
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 208/243 (85%), Positives = 230/243 (94%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPK+LD+VIVH+DIAQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct: 1 MLWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61 ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|255569436|ref|XP_002525685.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223534985|gb|EEF36668.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 211/253 (83%), Positives = 235/253 (92%), Gaps = 5/253 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLDQ++VH+DIAQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1 MLWVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P AEKVKVENKTWKIDAGSR ID+ELTTLSS++H+E+SP D GFQDRY+VQEVIK+MAKN
Sbjct: 61 PSAEKVKVENKTWKIDAGSRTIDVELTTLSSSHHIEMSPGDVGFQDRYIVQEVIKDMAKN 120
Query: 121 RP-IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
RP +D KG++G+K+LVLNEVDKLSREAQHSLRRTMEKYSA CRLILCCNSSSKVTEAIRS
Sbjct: 121 RPLVDAKGRKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRS 180
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RCLN+RI++P+EEQIVKVLEFI KKEGLQLP GFA R+AEKSNRSLRRA+LSFETCRVQQ
Sbjct: 181 RCLNVRISAPSEEQIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQ 240
Query: 240 LRFT----MPSVD 248
FT +P +D
Sbjct: 241 YPFTSNQPIPPMD 253
>gi|15241031|ref|NP_198126.1| replication factor C subunit 3/5 [Arabidopsis thaliana]
gi|18389268|gb|AAL67077.1| putative replication factor C [Arabidopsis thaliana]
gi|20259637|gb|AAM14175.1| putative replication factor C [Arabidopsis thaliana]
gi|332006337|gb|AED93720.1| replication factor C subunit 3/5 [Arabidopsis thaliana]
Length = 354
Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/243 (84%), Positives = 229/243 (94%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPK+LD+VIVH+DIAQ LKKLV+EQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct: 1 MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61 ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|115455849|ref|NP_001051525.1| Os03g0792600 [Oryza sativa Japonica Group]
gi|28269436|gb|AAO37979.1| putative replication factor [Oryza sativa Japonica Group]
gi|108711507|gb|ABF99302.1| Activator 1 38 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|113549996|dbj|BAF13439.1| Os03g0792600 [Oryza sativa Japonica Group]
gi|125546006|gb|EAY92145.1| hypothetical protein OsI_13856 [Oryza sativa Indica Group]
gi|215737314|dbj|BAG96243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765336|dbj|BAG87033.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625948|gb|EEE60080.1| hypothetical protein OsJ_12910 [Oryza sativa Japonica Group]
Length = 354
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/243 (82%), Positives = 224/243 (92%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD+V VH +AQNLKKLV EQDCPHLLFYGP GSGKKTL+MAL++Q+FG
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GA+KVK+ENKTWKID GSRNI++EL LSSA+HVE++PSDAGFQDRYVVQEVIKEMAKN
Sbjct: 61 AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID KGKR FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+R+N+P+E+QIV+VLEFI KKE LQLP GFA R+A +SNR+LRRAIL FETC+VQQ
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|30314657|dbj|BAC76086.1| replication factor C 38 kDa subunit [Oryza sativa Japonica Group]
Length = 354
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/243 (82%), Positives = 224/243 (92%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD+V VH +AQNLKKLV EQDCPHLLFYGP GSGKKTL+MAL++Q+FG
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GA+KVK+ENKTWKID GSRNI++EL LSSA+HVE++PSDAGFQDRYVVQEVIKEMAKN
Sbjct: 61 AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID KGKR FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDVKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+R+N+P+E+QIV+VLEFI KKE LQLP GFA R+A +SNR+LRRAIL FETC+VQQ
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|357112071|ref|XP_003557833.1| PREDICTED: replication factor C subunit 3-like [Brachypodium
distachyon]
Length = 354
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 198/243 (81%), Positives = 223/243 (91%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDK+RPK LD+V VH+ +AQNLKKLV EQDCPHLLFYGPPGSGKKTLIMAL++Q+FG
Sbjct: 1 MLWVDKHRPKALDKVTVHEQVAQNLKKLVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GAEKVK+ENKTWKID G+R DLEL LSS++HVE++PSDAGFQDRYVVQEVIKEMAK+
Sbjct: 61 AGAEKVKMENKTWKIDTGTRTFDLELVMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKS 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID KGKR FKVL+LNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLILNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+R+N+PTE+QIV+VLEFI KKE LQLP GFA R+A +SNR+LRRAIL FETC+VQQ
Sbjct: 181 CLNVRVNAPTEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|326488121|dbj|BAJ89899.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 354
Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 198/247 (80%), Positives = 224/247 (90%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDK+RPKTLD+VIVH+ +AQNLKK V EQDCPHLLFYGPPGSGKKTLIMAL++Q+FG
Sbjct: 1 MLWVDKHRPKTLDKVIVHEQVAQNLKKFVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G +KVK+ENKTWKID G+R DLEL LSS++HVE++PSDAGFQDRYVVQEVIKEMAK+
Sbjct: 61 AGVDKVKMENKTWKIDTGTRTFDLELAMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKS 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID KGKR FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+R+N+PTE+QIV+VLEFI KKE LQLP GFA R+A +SNR+LRRAIL FETC+VQQ
Sbjct: 181 CLNVRVNAPTEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY 240
Query: 241 RFTMPSV 247
F+ V
Sbjct: 241 PFSANQV 247
>gi|195621066|gb|ACG32363.1| replication factor C subunit 5 [Zea mays]
Length = 354
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/243 (79%), Positives = 223/243 (91%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD+V VH +AQNL+K V+EQDCPHLLFYGP GSGKKTLI+AL++Q+FG
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GAEKVK+ENKTWKID G+R +++EL LSSA+HVE++PSDAGFQDRYVVQEVIKEMAKN
Sbjct: 61 AGAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID KGKR FKVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+R+N+P+E+QIV+VLEFI KKE L LP+GFA R+A +SNR+LRRAIL FETC+VQQ
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLHLPAGFAARIAAQSNRNLRRAILFFETCKVQQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|212721694|ref|NP_001131961.1| uncharacterized protein LOC100193357 [Zea mays]
gi|194693044|gb|ACF80606.1| unknown [Zea mays]
gi|414873276|tpg|DAA51833.1| TPA: replication factor C subunit 5 [Zea mays]
Length = 354
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/243 (79%), Positives = 222/243 (91%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD+V VH +AQNL+K V+EQDCPHLLFYGP GSGKKTLI+AL++Q+FG
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GAEKVK+ENKTWKID G+R ++EL LSSA+HVE++PSDAGFQDRYVVQEVIKEMAKN
Sbjct: 61 AGAEKVKLENKTWKIDTGTRTFEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID KGKR FKVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+R+N+P+E+QIV+VLEFI KKE L LP+GFA R+A +SNR+LRRAIL FETC+VQQ
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLHLPAGFAARIAAQSNRNLRRAILFFETCKVQQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|413932847|gb|AFW67398.1| hypothetical protein ZEAMMB73_776055 [Zea mays]
Length = 354
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/243 (78%), Positives = 223/243 (91%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD+V VH +A+NL+K V+EQDCPHLLFYGP GSGKKTLI+AL++Q+FG
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVARNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GAEKVK+ENKTWKID G+R +++EL LSSA+HVE++PSDAGFQDRYVVQE+IKEMAKN
Sbjct: 61 AGAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMNPSDAGFQDRYVVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID KG+R FKVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDAKGRRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+R+N+P+E+QIV+VLEFI KKE L LP+GFA R+A +SNR+LRRAIL FETC+VQQ
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLILPAGFAARIAAQSNRNLRRAILFFETCKVQQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|294464282|gb|ADE77654.1| unknown [Picea sitchensis]
Length = 354
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/243 (77%), Positives = 220/243 (90%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRP++LD++ VH++IA NLK LV+E DCPHLLFYGP G+GKKTLIMALL+Q+FG
Sbjct: 1 MLWVDKYRPRSLDKISVHREIANNLKNLVSEHDCPHLLFYGPSGAGKKTLIMALLKQIFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PGAEKVKVENK WKI+AG+R ID+ELTT+SS +HVEL+PSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61 PGAEKVKVENKPWKIEAGTRTIDVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKEMAKS 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID G +GFKVLVLNEVDKLS+EAQHSLRRTME YS +CR+ILCC+S SKV EA+RSR
Sbjct: 121 RPIDVNGTKGFKVLVLNEVDKLSKEAQHSLRRTMEIYSGACRIILCCDSVSKVLEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLNIRINSP++EQIV VLE+IAKKEGLQLP GF R+A++SNR+LRRAIL FE C+VQQ
Sbjct: 181 CLNIRINSPSKEQIVDVLEYIAKKEGLQLPMGFTGRIAQQSNRNLRRAILCFEACKVQQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|168028662|ref|XP_001766846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681825|gb|EDQ68248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/243 (72%), Positives = 210/243 (86%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRP+TLD+V+VH++ A NLK L+ + DCPHLLFYGP G+GKKTLIMALLR++FG
Sbjct: 1 MLWVDKYRPRTLDKVMVHKEEATNLKNLIAQGDCPHLLFYGPSGAGKKTLIMALLREMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
AEKVKVENK WK++AG+R I++ELTT+SS +HVEL+PSDAGFQDRYVVQE+IK+MAKN
Sbjct: 61 SSAEKVKVENKPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RP+D G RGFKVLVLNEVDKLS+EAQHSLRRTMEKYSA+CRL+LCCNS+SKV EA+RSR
Sbjct: 121 RPLDVAGNRGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
C+NIRINSP+ + IV VL F+AKKE L LP A R+A SNR+LRR+IL E C+ +Q
Sbjct: 181 CVNIRINSPSRDDIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|302806064|ref|XP_002984782.1| hypothetical protein SELMODRAFT_121188 [Selaginella moellendorffii]
gi|302808301|ref|XP_002985845.1| hypothetical protein SELMODRAFT_234901 [Selaginella moellendorffii]
gi|300146352|gb|EFJ13022.1| hypothetical protein SELMODRAFT_234901 [Selaginella moellendorffii]
gi|300147368|gb|EFJ14032.1| hypothetical protein SELMODRAFT_121188 [Selaginella moellendorffii]
Length = 354
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/243 (71%), Positives = 209/243 (86%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRP TLD+ IVHQ+ AQ LK L+ E DCPHLLFYGP G+GKKTLIMA LR++FG
Sbjct: 1 MLWVDKYRPHTLDEAIVHQEQAQRLKSLIAEGDCPHLLFYGPSGAGKKTLIMAFLRELFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GA++V+VENK WK++AG+R ID+ELTT++S HVEL+PSDAGFQDRYVVQE+IKEMA +
Sbjct: 61 AGAQQVQVENKAWKVEAGTRKIDVELTTVASNYHVELNPSDAGFQDRYVVQEIIKEMAMS 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RP+D FKVLVLNEVD+LS+EAQHSLRRTMEKYSA+CRLILCC S+SKV EA+RSR
Sbjct: 121 RPLDLGVDISFKVLVLNEVDRLSKEAQHSLRRTMEKYSAACRLILCCTSASKVIEAVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CLN+RIN+P+E++I KVL+F+AKKE ++LP FA R+A SNR+LRRAILS E C+VQQ
Sbjct: 181 CLNVRINAPSEDEITKVLQFVAKKEEIRLPPAFAGRIALHSNRNLRRAILSLEACKVQQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|414873275|tpg|DAA51832.1| TPA: hypothetical protein ZEAMMB73_747597 [Zea mays]
Length = 210
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 158/193 (81%), Positives = 180/193 (93%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD+V VH +AQNL+K V+EQDCPHLLFYGP GSGKKTLI+AL++Q+FG
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GAEKVK+ENKTWKID G+R ++EL LSSA+HVE++PSDAGFQDRYVVQEVIKEMAKN
Sbjct: 61 AGAEKVKLENKTWKIDTGTRTFEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID KGKR FKVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR 180
Query: 181 CLNIRINSPTEEQ 193
CLN+R+N+P+E+Q
Sbjct: 181 CLNVRVNAPSEDQ 193
>gi|384253748|gb|EIE27222.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 354
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 156/243 (64%), Positives = 198/243 (81%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRP+TLD +I+HQDI ++LKKLVT DCPHLLFYGPPG+GKKTLI+ LLR+++G
Sbjct: 1 MLWVDKYRPRTLDDLIIHQDIGESLKKLVTTGDCPHLLFYGPPGAGKKTLILGLLREIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
EK+KVE K WKI+ SR +++ELTT+ S HVEL+PSD G QDRYVVQEVIK+M KN
Sbjct: 61 TAVEKIKVETKPWKIELPSRKLEIELTTVQSNYHVELNPSDVGNQDRYVVQEVIKDMCKN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RP++ KG+RG+KVL+LNEVD+LSREAQHSLRRTMEKYSA+CRLI C++ SKV + +RSR
Sbjct: 121 RPLELKGQRGYKVLLLNEVDRLSREAQHSLRRTMEKYSATCRLIFSCSNVSKVIDPLRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL +R+ PT +I VL+ +A+KE +QLP R+ + S+R+LRRA+L+ ETCRV Q
Sbjct: 181 CLCVRVPGPTGSEIQHVLQHVAQKENVQLPDALCQRIVQMSDRNLRRALLTLETCRVTQY 240
Query: 241 RFT 243
FT
Sbjct: 241 PFT 243
>gi|302835774|ref|XP_002949448.1| DNA replication factor C complex subunit 3 [Volvox carteri f.
nagariensis]
gi|300265275|gb|EFJ49467.1| DNA replication factor C complex subunit 3 [Volvox carteri f.
nagariensis]
Length = 355
Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 146/242 (60%), Positives = 197/242 (81%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRP+T D+ ++H+ IA NLKKLV D PH LFYGPPG+GKKTL+MALLR ++G
Sbjct: 1 MLWVDKYRPQTFDKFVIHKQIADNLKKLVAAGDFPHTLFYGPPGAGKKTLVMALLRAIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG EK++VE K W+I+ SR +++ELTT+SS+ H+EL+PSD G DRYVVQE+IK+MA+N
Sbjct: 61 PGVEKIRVETKPWQIELPSRKLEVELTTISSSYHLELNPSDVGNNDRYVVQEIIKDMARN 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RP+ G +GFKVLVLNEVD+LSREAQ LRRTMEKYS++CR+++ CN+ SKV E +RSR
Sbjct: 121 RPLGVDGNKGFKVLVLNEVDRLSREAQQGLRRTMEKYSSACRIVMVCNNISKVMEPVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL +R+ +PT++Q+++VL +AKKE L LP FA RL + ++RS+RRA+L+ E C+V++
Sbjct: 181 CLCVRVAAPTDDQMMEVLAGVAKKENLTLPPVFAARLVDYASRSMRRALLALEVCKVERY 240
Query: 241 RF 242
F
Sbjct: 241 PF 242
>gi|159475545|ref|XP_001695879.1| DNA replication factor C complex subunit 3 [Chlamydomonas
reinhardtii]
gi|158275439|gb|EDP01216.1| DNA replication factor C complex subunit 3 [Chlamydomonas
reinhardtii]
Length = 356
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 149/241 (61%), Positives = 192/241 (79%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP + D+ +VH+DIA NLKKLV D PH LFYGPPG+GKKTL+MALLR ++G
Sbjct: 3 LWVDKYRPNSFDKFVVHKDIADNLKKLVATGDFPHTLFYGPPGAGKKTLVMALLRAIYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EKV+VE K WKID SR +++ELTTLSS +H+EL+P+D G DRYVVQE+IKEMA++R
Sbjct: 63 GVEKVRVETKPWKIDLPSRKLEVELTTLSSNHHLELNPADVGSNDRYVVQEIIKEMARSR 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G RGFKVLVLNEVD+LS+EAQ LRRTMEKYS++CRLI+ C++ SKV E +RSRC
Sbjct: 123 PMGADGSRGFKVLVLNEVDRLSKEAQQGLRRTMEKYSSACRLIMVCSNVSKVMEPVRSRC 182
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P++ Q+++VL+ +AKKE L LP FA R+ + + R+LRRA+L E CR QQ
Sbjct: 183 LCVRVAAPSDAQVMEVLQGVAKKENLVLPEAFAARVVDYAGRNLRRALLCLEVCRAQQYP 242
Query: 242 F 242
F
Sbjct: 243 F 243
>gi|307106826|gb|EFN55071.1| hypothetical protein CHLNCDRAFT_35851 [Chlorella variabilis]
Length = 354
Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 155/243 (63%), Positives = 192/243 (79%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML+VDKYRPK L+Q +H D+A NL+KLV DCPH LFYGPPG+GKKTLI+ALLR+++G
Sbjct: 1 MLYVDKYRPKALEQFQLHSDVADNLRKLVVNGDCPHTLFYGPPGAGKKTLILALLREIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG EK+KVE K WKI S +IDLE TT+SSA HVE++PSD G +DRYVVQE+IKEMAK+
Sbjct: 61 PGVEKLKVECKPWKIKLPSSSIDLEFTTISSAYHVEMNPSDVGNRDRYVVQEIIKEMAKS 120
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPI T G+R FKVLVLNEVD+LS+EAQHSLRRTMEKYSA+CRL+LC N+ SKV + +RSR
Sbjct: 121 RPIGTDGQRSFKVLVLNEVDQLSKEAQHSLRRTMEKYSAACRLVLCGNNVSKVIDPVRSR 180
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL IR+ +P+ Q+ + ++ +A E L LP A RLA S R+LRRA+LS E C+V Q
Sbjct: 181 CLCIRVAAPSLAQVEEQVQAVAAHERLTLPVPLAKRLAAASERNLRRALLSLEACKVAQY 240
Query: 241 RFT 243
F
Sbjct: 241 PFA 243
>gi|255082302|ref|XP_002504137.1| predicted protein [Micromonas sp. RCC299]
gi|226519405|gb|ACO65395.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 152/243 (62%), Positives = 195/243 (80%), Gaps = 1/243 (0%)
Query: 1 MLWVDKYRPKTLDQVI-VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
MLWVDKYRP TLDQ+ V+ DIAQ+LK+LV + DCPHLLFYG G+GKKTL +A+LR++F
Sbjct: 1 MLWVDKYRPHTLDQMTTVNTDIAQHLKRLVQDGDCPHLLFYGVGGAGKKTLALAVLREIF 60
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G EKVKVE KTWK++ G R I++ELTT+SS HVE++PSD G +DRYVVQEVIK+MAK
Sbjct: 61 GAAVEKVKVEGKTWKLEQGERKIEVELTTMSSNYHVEMNPSDVGTKDRYVVQEVIKDMAK 120
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+RPID G++G+KVL+LNEVD+LS+EAQH LRRTMEKYS++CRLIL C S SKV +A+RS
Sbjct: 121 SRPIDAAGQQGYKVLLLNEVDRLSKEAQHGLRRTMEKYSSACRLILICTSVSKVLDAVRS 180
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RCL +R+ +P+ E + K++ +A+KE L +P A RLA S R++RR +LS E CRVQQ
Sbjct: 181 RCLPVRVAAPSVETVEKLVMDVAQKEKLVMPPELAARLALHSERNMRRCLLSMEACRVQQ 240
Query: 240 LRF 242
F
Sbjct: 241 YPF 243
>gi|413932846|gb|AFW67397.1| hypothetical protein ZEAMMB73_776055 [Zea mays]
Length = 182
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 145/182 (79%), Positives = 169/182 (92%)
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
+FG GAEKVK+ENKTWKID G+R +++EL LSSA+HVE++PSDAGFQDRYVVQE+IKEM
Sbjct: 1 MFGAGAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMNPSDAGFQDRYVVQEIIKEM 60
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
AKNRPID KG+R FKVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEA+
Sbjct: 61 AKNRPIDAKGRRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAV 120
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
RSRCLN+R+N+P+E+QIV+VLEFI KKE L LP+GFA R+A +SNR+LRRAIL FETC+V
Sbjct: 121 RSRCLNVRVNAPSEDQIVQVLEFIGKKENLILPAGFAARIAAQSNRNLRRAILFFETCKV 180
Query: 238 QQ 239
QQ
Sbjct: 181 QQ 182
>gi|303281866|ref|XP_003060225.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458880|gb|EEH56177.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 356
Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/246 (60%), Positives = 187/246 (76%), Gaps = 4/246 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDI--AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58
MLWVDK+RP LD+ H ++ A++LK+LV + DCPHLLFYG G+GKKTL +A+LR++
Sbjct: 1 MLWVDKHRPHALDK-FAHANVSTAEHLKRLVADGDCPHLLFYGVSGAGKKTLALAVLREI 59
Query: 59 FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
FGPG EKVKVE KTWKI+ G R I++ELTT+SS HVE++PSDAG +DRYVVQEVIKEMA
Sbjct: 60 FGPGVEKVKVEGKTWKIEQGERKIEVELTTMSSNYHVEMNPSDAGNKDRYVVQEVIKEMA 119
Query: 119 KNRPIDTKGKRGFK-VLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
K+RPID G +GFK L VD LS+EAQH LRRTMEKYS +CRL+L CNS SKV +A+
Sbjct: 120 KSRPIDAAGNQGFKGAFYLTLVDNLSKEAQHGLRRTMEKYSQACRLVLVCNSVSKVLDAV 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
RSRCL IR+ +P+ ++ +L +AK+E L LP A R+A S R++RRA+LS E CR
Sbjct: 180 RSRCLPIRVAAPSTTEVEALLHDVAKREKLTLPPELAGRVAAHSERNMRRALLSLEACRA 239
Query: 238 QQLRFT 243
Q FT
Sbjct: 240 HQYPFT 245
>gi|412989140|emb|CCO15731.1| replication factor C subunit 3 [Bathycoccus prasinos]
Length = 410
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/243 (60%), Positives = 185/243 (76%), Gaps = 2/243 (0%)
Query: 2 LWVDKYRPKTLDQV-IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRP L+Q V+ +A +LK+LV + DCPHLLFYGP GSGKK+L++ALL +FG
Sbjct: 56 LWVDKYRPIELNQCEHVNASVANHLKELVKDGDCPHLLFYGPSGSGKKSLVLALLSTIFG 115
Query: 61 PGAEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
PGA K KVE KTWKIDA S R I+++L T SS H+E++PSDAG++DRYVVQEVIKEMA+
Sbjct: 116 PGAHKTKVEQKTWKIDATSTRKIEVDLMTQSSNYHIEINPSDAGYKDRYVVQEVIKEMAR 175
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+RPID +G G+K+LVL E DKLS+EAQH LRRTMEKYS++CRLIL +S ++V EA+RS
Sbjct: 176 SRPIDAQGNAGYKILVLTECDKLSKEAQHGLRRTMEKYSSACRLILIADSVNRVLEAVRS 235
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RCL +R+ +P E I KVL IA KE L LP +++A + R LRRAIL+ E CRV
Sbjct: 236 RCLPVRVAAPRAEDIEKVLYDIAAKEKLTLPPQLCSKVAVFAKRDLRRAILALEACRVAN 295
Query: 240 LRF 242
F
Sbjct: 296 YPF 298
>gi|145346328|ref|XP_001417641.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577869|gb|ABO95934.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 355
Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 183/243 (75%), Gaps = 1/243 (0%)
Query: 1 MLWVDKYRPKTLDQV-IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
MLWVDK+RP L + ++ A++LK L+ DCPHL FYGP G+GKKTL + +LR++F
Sbjct: 1 MLWVDKHRPHALGECDAINTAQAKHLKLLIANGDCPHLFFYGPSGAGKKTLALGVLREIF 60
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
GPGAEKVK+ENKTWKID R I++EL +SS +H E++PSD G +DRYVVQEVIKEMA+
Sbjct: 61 GPGAEKVKLENKTWKIDQNDRKIEVELAMMSSNHHCEMNPSDCGSKDRYVVQEVIKEMAR 120
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+RPID+ G GFKVLVL EVD+LSREAQ+ LRRTMEKYSASCRL L S+V +A++S
Sbjct: 121 SRPIDSDGCEGFKVLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSRVMDALQS 180
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RCL +R+ P E+I +L +AKKE L+LP ATR+A S R++RRA+L+ ETCRV
Sbjct: 181 RCLPVRVPGPRVEEIENLLHDVAKKEKLELPPELATRVATASGRNMRRALLALETCRVNS 240
Query: 240 LRF 242
F
Sbjct: 241 YPF 243
>gi|308803597|ref|XP_003079111.1| putative replication factor (ISS) [Ostreococcus tauri]
gi|116057566|emb|CAL53769.1| putative replication factor (ISS) [Ostreococcus tauri]
Length = 397
Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 142/242 (58%), Positives = 181/242 (74%), Gaps = 1/242 (0%)
Query: 2 LWVDKYRPKTL-DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDK+RP L D V+ A++LK L+ DCPHL F+GP G+GKKTL +A+LR++FG
Sbjct: 44 LWVDKHRPHELGDATTVNARTAKHLKLLIARGDCPHLFFHGPSGAGKKTLALAVLREIFG 103
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G EKVK+ENKTWKID R +++EL +SS H E++PSD G +DRYVVQEVIKEMA++
Sbjct: 104 AGVEKVKLENKTWKIDQNDRGVEVELAMMSSNFHCEMNPSDCGSKDRYVVQEVIKEMARS 163
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RPID G G+KVLVL EVD+LSREAQ+ LRRTMEKYSASCRL L SKV +A++SR
Sbjct: 164 RPIDADGIEGYKVLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSKVMDALQSR 223
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL IR+ P+ E+I +L +AKKE L+LP ATR+A+ S R++RRA+L+ ETCRV
Sbjct: 224 CLPIRVPGPSIEEIENLLHEVAKKEKLELPPELATRVAQASGRNMRRALLTLETCRVMNY 283
Query: 241 RF 242
F
Sbjct: 284 PF 285
>gi|443704239|gb|ELU01384.1| hypothetical protein CAPTEDRAFT_181059 [Capitella teleta]
Length = 358
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 184/242 (76%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L ++ H++ A +LKKLV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPTALGKLDYHKEQAGHLKKLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK ++E++T+ + + LE++T++S H+E++PSD G QDR V+QEV+K MA+
Sbjct: 63 GVEKTRIEHQTFVTPSKKK---LEISTVASNYHIEVNPSDVGVQDRVVIQEVVKSMAQTN 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKVLVL EVD+L+++AQH+LRRTMEKY A+CRLILCCNS+SKV AIRSRC
Sbjct: 120 QLETSQQREFKVLVLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
+R+ +P+E+QI +VL+ + KKEGL LPS A ++A +SNR+LRRAIL E CRVQQ
Sbjct: 180 FAVRVPAPSEDQICQVLQLVCKKEGLNLPSDLAKKIATQSNRNLRRAILMCEACRVQQYP 239
Query: 242 FT 243
F+
Sbjct: 240 FS 241
>gi|320162792|gb|EFW39691.1| replication factor C subunit [Capsaspora owczarzaki ATCC 30864]
Length = 356
Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 140/249 (56%), Positives = 187/249 (75%), Gaps = 13/249 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP LD++ + +++ LK LV+ D PH++ YGPPG+GKKT +M LLR+++GP
Sbjct: 3 LWVDKYRPTNLDKLDYNLTLSKQLKHLVSAGDFPHMMVYGPPGAGKKTRVMCLLRELYGP 62
Query: 62 GAEKVKVENKTWK---IDAG----SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114
G EK+KVE++T+K I AG S + LE+ T++S H+EL+PSDAG QDR VVQ+++
Sbjct: 63 GVEKLKVEHRTFKVCVIAAGLQKASDDAKLEIITIASNYHIELNPSDAGTQDRLVVQDIL 122
Query: 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
KE+A + +DT+ +R FKV+VL EVDKLS++AQH+LRRTME Y ++CRLIL CNS+SKV
Sbjct: 123 KEIASSHQLDTQTQRSFKVVVLTEVDKLSKDAQHALRRTMELYVSTCRLILLCNSTSKVL 182
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
IRSRCL IRI +PT V E IA+KEG+ + FATR+AE S+R+LR+AILSFE
Sbjct: 183 SPIRSRCLGIRIPAPT------VPESIARKEGISVSGDFATRIAESSDRNLRKAILSFEA 236
Query: 235 CRVQQLRFT 243
CRVQQ F
Sbjct: 237 CRVQQYPFV 245
>gi|321478378|gb|EFX89335.1| hypothetical protein DAPPUDRAFT_190647 [Daphnia pulex]
Length = 355
Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 188/243 (77%), Gaps = 3/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP TL ++ H + + L+K+VT+ + PHLL YGPPG+GKKT + ALLR+++GP
Sbjct: 3 LWVDKYRPNTLAKLDFHLEQGERLQKMVTKGNFPHLLIYGPPGAGKKTRVSALLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++ + + N +E+ T++S H+E++P+DAG DR V+QE+IK +A+ +
Sbjct: 63 GVEKLRMEHQNFTTPS---NKKIEVMTVASNYHIEVNPNDAGIYDRIVIQEMIKNIAQAQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D G+R FKV++L EVDKL+++AQH+LRRTMEKY +CRLILC NS+SK+ ++SRC
Sbjct: 120 QLDIGGQREFKVVILTEVDKLTKDAQHALRRTMEKYMTTCRLILCANSTSKIIAPLQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+++ I+KVL+ ++KKEG+ LP+ FA RLAE+S R+LRRA+L E C+VQQ
Sbjct: 180 LAIRVPAPSQDDIIKVLQMVSKKEGITLPADFAIRLAERSERNLRRALLMLEACKVQQYP 239
Query: 242 FTM 244
F++
Sbjct: 240 FSV 242
>gi|72016481|ref|XP_779912.1| PREDICTED: replication factor C subunit 3 isoform 1
[Strongylocentrotus purpuratus]
Length = 356
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 189/251 (75%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP L ++ H++ A NLKKLV D PHL+ YGP G+GKKT IM L++++G
Sbjct: 3 LWVDKHRPTALSKLDYHKEQASNLKKLVQSGDFPHLMVYGPSGAGKKTRIMCALKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T+ + ++ +E+TT++S H+E++PSDAG DR V+Q++IK A+ +
Sbjct: 63 GVEKLRIEHQTFTTPSKAK---IEITTIASNYHIEVNPSDAGIYDRIVIQDLIKNTAQFQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV+VL EVD+L+++AQH+LRRTMEKY+A+CRLILCCNS+SKV AIRSRC
Sbjct: 120 QMETSAQRDFKVVVLTEVDRLTKDAQHALRRTMEKYTATCRLILCCNSTSKVIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ +I ++L+ + KKEGL LPS A R+AEKS R+LR+AILS E C+VQQ
Sbjct: 180 LGVRVAAPSIAEITQILQNVCKKEGLNLPSELAKRIAEKSERNLRKAILSCEACKVQQYP 239
Query: 242 FT----MPSVD 248
F+ +P D
Sbjct: 240 FSADQDIPEAD 250
>gi|198425284|ref|XP_002119398.1| PREDICTED: similar to Replication factor C (activator 1) 3 [Ciona
intestinalis]
Length = 355
Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 181/242 (74%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPK+L+++ H + A+NLKKLV D PHLLFYGPPG+GKKT IM LLR+V+G
Sbjct: 3 LWVDKYRPKSLNKLDYHLEQAENLKKLVENGDFPHLLFYGPPGAGKKTRIMCLLREVYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E + + + LE+ LSS H+E++PSDAG DR VVQE+IK +A++
Sbjct: 63 GVEKLRIEKHNFVTPSKKK---LEIAALSSNYHIEVTPSDAGMHDRVVVQELIKTVAQSH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+++K ++ FKV+VL EVD+L+R+AQH+LRRTMEKY ++CRLIL CNS+SKV AI+SRC
Sbjct: 120 QLESKAQKRFKVIVLTEVDRLTRDAQHALRRTMEKYMSTCRLILYCNSTSKVIPAIQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ + ++K+L + KKEG +P A R+A S R+LRRA+L ETCRVQ +
Sbjct: 180 LAVRVAAPSIDDVIKILTSVGKKEGHPIPQELARRIAVASKRNLRRALLMSETCRVQHVP 239
Query: 242 FT 243
T
Sbjct: 240 LT 241
>gi|156383529|ref|XP_001632886.1| predicted protein [Nematostella vectensis]
gi|156219948|gb|EDO40823.1| predicted protein [Nematostella vectensis]
Length = 355
Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 181/242 (74%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H+D+A +LKKLV D PHLL YGP G+GKKT I +LR+++G
Sbjct: 3 LWVDKYRPTSLGKLDYHKDLAAHLKKLVHSGDFPHLLVYGPSGAGKKTRITCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K+E+ ++ + N +E++T+ S H+E++ SD G DR VVQE++K A+
Sbjct: 63 GVEKLKIEHHSFTTPS---NKKVEISTIGSIFHLEVNASDVGIYDRVVVQELLKNTAQAH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++ R FKV+VL EVD+L+++AQH+LRRTMEKY+++CRLILCCNS+SKV AIRSRC
Sbjct: 120 SLELSAHRDFKVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNSTSKVIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +RI +P+ E+I ++L+F+ KKEGL +PS + R+AEKS R+LR+A+L E C+VQQ
Sbjct: 180 LGVRIPAPSVEEICQILQFVCKKEGLTIPSELSRRIAEKSGRNLRKALLMCEACKVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|221121640|ref|XP_002167209.1| PREDICTED: replication factor C subunit 3-like [Hydra
magnipapillata]
Length = 355
Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 126/242 (52%), Positives = 179/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW+DK+RP L ++ H + A LKKLV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWIDKHRPTNLSKLTYHLEQAGRLKKLVNNADFPHLLIYGPSGAGKKTRIMCILRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EKVK+E +++ + + +E++++SS H+E++PSDAG DR V+QE+IK A+
Sbjct: 63 GVEKVKLEQQSYLTPSKKK---IEISSISSNYHIEINPSDAGIYDRVVIQELIKTTAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ ++ FKV++L EVD+L+++AQH+LRRTMEKY A+CRLILCCNS+SKV AI+SRC
Sbjct: 120 QLDSTSQKSFKVILLMEVDRLTKDAQHALRRTMEKYVATCRLILCCNSTSKVISAIQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ SP+ E++V+ L + KKEGL LPS A R+A+K+ ++RRA+L E CRVQQ
Sbjct: 180 LGIRVPSPSTEEVVQTLNSVCKKEGLNLPSELANRIAQKAEGNMRRALLMCEACRVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|157116416|ref|XP_001658466.1| Rfc5p, putative [Aedes aegypti]
gi|108876490|gb|EAT40715.1| AAEL007581-PA [Aedes aegypti]
Length = 358
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 128/251 (50%), Positives = 183/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD+YRP+ L ++ H+ A +L L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDRYRPRELSKLDYHKTQATHLTNLCAQGDFPHLMFYGPSGAGKKTRIMCLLRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E + + N +E+ T+SS H+E++PSDAG DR V+ ++IK++A+ +
Sbjct: 63 GVERLRNEVMNFTTPS---NRKVEIMTVSSNYHIEVNPSDAGIYDRVVITDMIKQIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FK +VL+EVD+L+++AQH+LRRTMEKY A+CRL+LC NS+S+V A++SRC
Sbjct: 120 QIDPSGQREFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRVIPAVKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+++PT E+IV +L I KKEGL +PS ATR+ EKS R+LRRAIL E C+VQQ
Sbjct: 180 LGIRVSAPTNEEIVSILNNICKKEGLHIPSELATRITEKSERNLRRAILMLEACKVQQYP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTVNQEVPEID 250
>gi|170031637|ref|XP_001843691.1| replication factor C subunit 3 [Culex quinquefasciatus]
gi|167870519|gb|EDS33902.1| replication factor C subunit 3 [Culex quinquefasciatus]
Length = 358
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 127/251 (50%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD+YRP+ L ++ H+ A +L L + D PHL+FYGP G+GKKT IM LLR+++GP
Sbjct: 3 LWVDRYRPRELAKLDYHKTQAGHLINLCAQGDFPHLMFYGPSGAGKKTRIMCLLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E + + N +E+ T+SS H+E++PSDAG DR V+ ++IK++A+ +
Sbjct: 63 GVERLRNEIMNFTTPS---NKKVEIMTVSSNYHIEVNPSDAGIYDRVVITDMIKQIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FK +VL+EVD+L+++AQH+LRRTMEKY A+CRL+LC NS+S+V A++SRC
Sbjct: 120 QIDPSGQREFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRVIPAVKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+++PT E+IV +L I KKEGL +P ATR+ +KS+R+LRRAIL E C+VQQ
Sbjct: 180 LGIRVSAPTGEEIVGILNNICKKEGLHIPPELATRITQKSDRNLRRAILMLEACKVQQYP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTVGQDVPEID 250
>gi|298714917|emb|CBJ27673.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 129/253 (50%), Positives = 183/253 (72%), Gaps = 13/253 (5%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDK+RPK+LD + VH ++ L + + + PHLLFYGP GSGKKT ++ALL++++G
Sbjct: 1 MLWVDKHRPKSLDSLDVHPELTTRLAAMSEDGEIPHLLFYGPAGSGKKTRVLALLKRIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PGAE+V++E++++K + N +ELTT++S H+E+SP DAG DRYVVQ++IKE+A+N
Sbjct: 61 PGAERVRLEHRSFKTPS---NRVVELTTVASNYHIEMSPGDAGIYDRYVVQDIIKEIAQN 117
Query: 121 RPI----------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
R I D K K G KV+VL VD+L+++AQ LRRTME+Y++SCRLIL C+S
Sbjct: 118 RSISASMGGGGSDDKKSKIGHKVVVLVGVDRLTKQAQAGLRRTMERYTSSCRLILLCHSP 177
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
SKV E +RSRCL +R+ +P+E ++ VL + +KE L LP A R+A+ S R+LRRA+L
Sbjct: 178 SKVIEPVRSRCLGVRVPAPSESEVCSVLTSVCRKESLTLPPALAARVAKVSKRNLRRAVL 237
Query: 231 SFETCRVQQLRFT 243
E CRVQQ F+
Sbjct: 238 MIEACRVQQYPFS 250
>gi|323456769|gb|EGB12635.1| hypothetical protein AURANDRAFT_69595 [Aureococcus anophagefferens]
Length = 353
Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 132/244 (54%), Positives = 181/244 (74%), Gaps = 5/244 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDK+RP L ++ H ++++ L L + D PHLLFYGP G+GKKT IMALLR ++G
Sbjct: 1 MLWVDKHRPLELGKMSYHGELSERLATLAADGDIPHLLFYGPSGAGKKTRIMALLRALYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GAEK ++E++ +K N +E+TT++S H+E++PSDAG DRYVVQEVIKE+A++
Sbjct: 61 AGAEKQRLEHRDFKTPT---NKAIEVTTVASNYHIEINPSDAGNNDRYVVQEVIKEIAQS 117
Query: 121 RPID--TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
+ KG+ G+KV++L EVD+L+R+AQ LRRTMEK ++SCRLILCCN+ SKV + +R
Sbjct: 118 GSLHKGDKGRVGYKVVLLVEVDRLTRQAQAGLRRTMEKCTSSCRLILCCNNPSKVIDPLR 177
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
SRCL IR+ +PTE +IV VL+ +A +E L LP A R+A+ S R+LRRAILS E C+VQ
Sbjct: 178 SRCLGIRVAAPTEAEIVAVLDDVAARERLDLPPALAARIAKASKRNLRRAILSLEECKVQ 237
Query: 239 QLRF 242
Q F
Sbjct: 238 QYPF 241
>gi|395520900|ref|XP_003764560.1| PREDICTED: replication factor C subunit 3 [Sarcophilus harrisii]
Length = 356
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPSSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSTQREFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSELAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTSDQDIPETD 250
>gi|291408671|ref|XP_002720641.1| PREDICTED: replication factor C 3 [Oryctolagus cuniculus]
Length = 356
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 185/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E+I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEEICHVLTTVCKKEGLNLPSQLAHRLAEKSRRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|126327443|ref|XP_001367742.1| PREDICTED: replication factor C subunit 3 [Monodelphis domestica]
Length = 356
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPTSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSTQREFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSELAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTPDQDIPETD 250
>gi|149635763|ref|XP_001509935.1| PREDICTED: replication factor C subunit 3-like [Ornithorhynchus
anatinus]
Length = 356
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 183/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPGSLARLDYHKEQANQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGT 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++ + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQAITTPSKKK---IEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY A+CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LP A RLAEK+NR+LR+A+L E C+VQQ
Sbjct: 180 LAVRVPAPSVEDICHVLSTVCKKEGLSLPPALARRLAEKANRNLRKALLMCEACKVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|57526873|ref|NP_001009629.1| replication factor C subunit 3 [Rattus norvegicus]
gi|56789712|gb|AAH88281.1| Replication factor C (activator 1) 3 [Rattus norvegicus]
gi|149015521|gb|EDL74921.1| replication factor C (activator 1) 3 [Rattus norvegicus]
Length = 356
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTEDQEIPETD 250
>gi|297693825|ref|XP_002824203.1| PREDICTED: replication factor C subunit 3 isoform 1 [Pongo abelii]
Length = 356
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR VVQE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVVQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|355716184|gb|AES05530.1| replication factor C 3, 38kDa [Mustela putorius furo]
Length = 374
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 182/242 (75%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H+++A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 22 LWVDKYRPCSLGRLDYHKELAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 81
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 82 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 138
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 139 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 198
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 199 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 258
Query: 242 FT 243
F+
Sbjct: 259 FS 260
>gi|426375155|ref|XP_004054411.1| PREDICTED: replication factor C subunit 3 isoform 2 [Gorilla
gorilla gorilla]
Length = 315
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|108773789|ref|NP_853536.2| replication factor C subunit 3 isoform 2 [Homo sapiens]
Length = 305
Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|301765690|ref|XP_002918266.1| PREDICTED: replication factor C subunit 3-like [Ailuropoda
melanoleuca]
gi|281349170|gb|EFB24754.1| hypothetical protein PANDA_006686 [Ailuropoda melanoleuca]
Length = 356
Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAQRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|54696202|gb|AAV38473.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|60824442|gb|AAX36680.1| replication factor C 3 [synthetic construct]
gi|61364953|gb|AAX42630.1| replication factor C [synthetic construct]
gi|61367122|gb|AAX42955.1| replication factor C 3 [synthetic construct]
gi|61371558|gb|AAX43689.1| replication factor C 3 [synthetic construct]
Length = 357
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|345790237|ref|XP_534500.3| PREDICTED: replication factor C subunit 3 [Canis lupus familiaris]
Length = 356
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|4506489|ref|NP_002906.1| replication factor C subunit 3 isoform 1 [Homo sapiens]
gi|332242266|ref|XP_003270307.1| PREDICTED: replication factor C subunit 3 isoform 1 [Nomascus
leucogenys]
gi|426375153|ref|XP_004054410.1| PREDICTED: replication factor C subunit 3 isoform 1 [Gorilla
gorilla gorilla]
gi|3915601|sp|P40938.2|RFC3_HUMAN RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|18921089|gb|AAL82505.1|AF484446_1 replication factor C (activator 1) 3 (38kD) [Homo sapiens]
gi|1498259|gb|AAB07268.1| replication factor C, 38-kDa subunit [Homo sapiens]
gi|12652795|gb|AAH00149.1| Replication factor C (activator 1) 3, 38kDa [Homo sapiens]
gi|60812373|gb|AAX36209.1| replication factor C 3 [synthetic construct]
gi|119628942|gb|EAX08537.1| replication factor C (activator 1) 3, 38kDa, isoform CRA_a [Homo
sapiens]
gi|119628943|gb|EAX08538.1| replication factor C (activator 1) 3, 38kDa, isoform CRA_a [Homo
sapiens]
gi|123980104|gb|ABM81881.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|123994885|gb|ABM85044.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|261860576|dbj|BAI46810.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
Length = 356
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|388453027|ref|NP_001253730.1| replication factor C subunit 3 [Macaca mulatta]
gi|402901747|ref|XP_003913802.1| PREDICTED: replication factor C subunit 3-like [Papio anubis]
gi|67970669|dbj|BAE01677.1| unnamed protein product [Macaca fascicularis]
gi|355700922|gb|EHH28943.1| Activator 1 subunit 3 [Macaca mulatta]
gi|355754623|gb|EHH58524.1| Activator 1 subunit 3 [Macaca fascicularis]
gi|380815322|gb|AFE79535.1| replication factor C subunit 3 isoform 1 [Macaca mulatta]
gi|383414017|gb|AFH30222.1| replication factor C subunit 3 isoform 1 [Macaca mulatta]
Length = 356
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQATQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|351703595|gb|EHB06514.1| Replication factor C subunit 3 [Heterocephalus glaber]
Length = 356
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVISPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A R+AEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAQRIAEKSCRNLRKALLMSEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|444707055|gb|ELW48364.1| Replication factor C subunit 3 [Tupaia chinensis]
Length = 356
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 182/243 (74%), Gaps = 3/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPSSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQSITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FTM 244
FT+
Sbjct: 240 FTI 242
>gi|54696204|gb|AAV38474.1| replication factor C (activator 1) 3, 38kDa [Homo sapiens]
gi|61357169|gb|AAX41345.1| replication factor C 3 [synthetic construct]
Length = 356
Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|114649328|ref|XP_509625.2| PREDICTED: replication factor C subunit 3 isoform 4 [Pan
troglodytes]
gi|397513233|ref|XP_003826924.1| PREDICTED: replication factor C subunit 3-like [Pan paniscus]
gi|410218892|gb|JAA06665.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410266462|gb|JAA21197.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410287194|gb|JAA22197.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410331917|gb|JAA34905.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
Length = 356
Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A R+AEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRIAEKSRRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|26335097|dbj|BAC31249.1| unnamed protein product [Mus musculus]
Length = 270
Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 181/242 (74%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + +KEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|149730139|ref|XP_001494707.1| PREDICTED: replication factor C subunit 3 [Equus caballus]
Length = 356
Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLTTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|124249204|ref|NP_081285.1| replication factor C subunit 3 [Mus musculus]
gi|30913256|sp|Q8R323.1|RFC3_MOUSE RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|20071210|gb|AAH26795.1| Rfc3 protein [Mus musculus]
gi|74188877|dbj|BAE39214.1| unnamed protein product [Mus musculus]
gi|74203125|dbj|BAE26250.1| unnamed protein product [Mus musculus]
gi|148673950|gb|EDL05897.1| mCG17786, isoform CRA_a [Mus musculus]
Length = 356
Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + +KEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTEDQEIPETD 250
>gi|395855456|ref|XP_003800177.1| PREDICTED: replication factor C subunit 3 [Otolemur garnettii]
Length = 356
Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHETITTPSKKK---IEISTIASNYHLEVNPSDAGNNDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLTLPSQLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|148673951|gb|EDL05898.1| mCG17786, isoform CRA_b [Mus musculus]
Length = 289
Score = 266 bits (680), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 185/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 22 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 81
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 82 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 138
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 139 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 198
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + +KEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 199 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 258
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 259 FTEDQEIPETD 269
>gi|62896703|dbj|BAD96292.1| replication factor C 3 isoform 1 variant [Homo sapiens]
Length = 356
Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTTTTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEGICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|260833022|ref|XP_002611456.1| hypothetical protein BRAFLDRAFT_113525 [Branchiostoma floridae]
gi|229296827|gb|EEN67466.1| hypothetical protein BRAFLDRAFT_113525 [Branchiostoma floridae]
Length = 356
Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 177/241 (73%), Gaps = 3/241 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L+++ H + A LK+LV D PHLL +GP G+GKKT I LLR+++G
Sbjct: 3 LWVDKYRPTSLNKLSYHTEQAAQLKRLVQNGDFPHLLVFGPSGAGKKTRITCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+ + + + +E+TT++S H+E+ PSDAG QDR VVQE+IK +A+ +
Sbjct: 63 GVEKLRIEHHNFTTPSKKK---IEITTIASNYHIEVCPSDAGVQDRVVVQELIKMVAQAQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ +R FKV++L EVD+L+++AQH+LRRTMEKY +CRLILCC S+SKV AIRSRC
Sbjct: 120 QLDSSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYVTTCRLILCCESTSKVIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ +QI +L+ + KKEGL L A R+A+KS R+LRRAIL E C+VQQ
Sbjct: 180 LGVRVPAPSNQQICSILQTVCKKEGLTLSPELAGRIADKSGRNLRRAILMLEACKVQQYP 239
Query: 242 F 242
F
Sbjct: 240 F 240
>gi|325182836|emb|CCA17291.1| replication factor C subunit 3 putative [Albugo laibachii Nc14]
Length = 352
Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 176/243 (72%), Gaps = 2/243 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDK RP LD + H I + L+ L + D PHLL YGP G+GKKT IMALL ++G
Sbjct: 1 MLWVDKCRPDELDALTYHPQITRRLQNLSSSDDFPHLLVYGPSGAGKKTRIMALLHAMYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G K ++E+K++KI R++ +E+TT++S H+E++PSDA QDR +VQEV+KE+A+
Sbjct: 61 KGVRKQRLEHKSFKI--PDRSVKIEITTVASNYHIEMNPSDADNQDRLIVQEVLKEIAQY 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
DTK K+ FKV++L EVD+LS+ AQH+LRRTMEKY+A+CRLILCCNSSSK+ E +RSR
Sbjct: 119 HLADTKAKKPFKVVLLMEVDRLSKHAQHALRRTMEKYTATCRLILCCNSSSKIIEPLRSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL I +++PT +I VLE + K EG+ ++A++S+R+LRRA+L ETC VQ+
Sbjct: 179 CLGICVSAPTNREICNVLESVCKNEGISYLPSLGEKIAQQSDRNLRRALLILETCHVQRY 238
Query: 241 RFT 243
F
Sbjct: 239 PFA 241
>gi|298104116|ref|NP_001177121.1| replication factor C subunit 3 [Sus scrofa]
Length = 356
Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 182/243 (74%), Gaps = 3/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L Q+ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A +LAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FTM 244
FT+
Sbjct: 240 FTV 242
>gi|61367115|gb|AAX42954.1| replication factor C 3 [synthetic construct]
Length = 357
Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW+DKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWLDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|194383204|dbj|BAG59158.1| unnamed protein product [Homo sapiens]
Length = 305
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 181/242 (74%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT +M +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRLMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|427795473|gb|JAA63188.1| Putative replication factor c subunit rfc3, partial [Rhipicephalus
pulchellus]
Length = 357
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 179/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP L ++ HQ+ A LKKLV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 5 LWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELYGA 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E++ + + + +E+ T++S H+E++PS+AG DR V+QE++K +A+ +
Sbjct: 65 GVERLRIEHQNFVTPSKKK---IEIVTVASNYHIEVNPSEAGIHDRVVIQELLKTVAQTQ 121
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+++ +R FKV++L EVDKL+++AQH+LRRTMEKY A+CRLILCCNS SKV AIRSRC
Sbjct: 122 QLESNAQREFKVVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSCSKVIPAIRSRC 181
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ ++++ VL +A+KEG+ LP A +A +S+R+LRRA+L E CR QQ
Sbjct: 182 LAIRVAAPSVDEVITVLNLVARKEGITLPDTLAQAIAAQSHRNLRRAVLMLEACRAQQYP 241
Query: 242 FT 243
F+
Sbjct: 242 FS 243
>gi|403286412|ref|XP_003934486.1| PREDICTED: replication factor C subunit 3-like [Saimiri boliviensis
boliviensis]
Length = 356
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 183/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|301092501|ref|XP_002997106.1| replication factor C subunit 3 [Phytophthora infestans T30-4]
gi|262111642|gb|EEY69694.1| replication factor C subunit 3 [Phytophthora infestans T30-4]
Length = 352
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 174/243 (71%), Gaps = 2/243 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRP +L + H ++ + L L D PHLL YGP G+GKKT IMALLR ++G
Sbjct: 1 MLWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GA KV++E+K++K A +R+ +E+TT++S H+E++PSD G DR VVQEV+KE+A+
Sbjct: 61 DGALKVRLEHKSFK--APNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQY 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
DT R FKV++L EVD+LS+ AQH+LRRTMEKY+A+CRLILCCN+ SKV + +RSR
Sbjct: 119 HLADTNAHRPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL +R+ +PT + I +L+ + KEGL + +A KS R+LRRA+L ETCRVQ
Sbjct: 179 CLGVRVGAPTTDDICTILQGVCSKEGLDYCAPLGKEIALKSERNLRRALLMLETCRVQNY 238
Query: 241 RFT 243
F+
Sbjct: 239 PFS 241
>gi|158299762|ref|XP_319799.4| AGAP009047-PA [Anopheles gambiae str. PEST]
gi|157013673|gb|EAA14768.4| AGAP009047-PA [Anopheles gambiae str. PEST]
Length = 358
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/251 (49%), Positives = 183/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD+YRP+ L ++ H+ A L L ++ D PHL+FYGP G+GKKT I+ LLR+++GP
Sbjct: 3 LWVDRYRPRELAKLDYHKPQASQLINLCSQGDFPHLMFYGPSGAGKKTRIICLLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E + + N +E+ T+SS H+E++PSD G DR V+ ++IK++A+ +
Sbjct: 63 GVERLRNEVMNFTTPS---NKKIEIMTVSSNYHIEVNPSDVGIYDRVVITDMIKQIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FK +VL+EVD+L+++AQH+LRRTMEKY A+CRLILC NS+S++ A++SRC
Sbjct: 120 QIDPSGQREFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLILCVNSTSRIIPAVKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+++PTE++IV ++ I KKE L +P ATR+A+KS R+LRRAIL+ E C+V Q
Sbjct: 180 LGIRVSAPTEDEIVSIMNSICKKENLHIPPELATRIAQKSERNLRRAILTLEACKVMQYP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTANQEIPDMD 250
>gi|84370117|ref|NP_001033636.1| replication factor C subunit 3 [Bos taurus]
gi|426236447|ref|XP_004012180.1| PREDICTED: replication factor C subunit 3 [Ovis aries]
gi|108860923|sp|Q2TBV1.1|RFC3_BOVIN RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|83638731|gb|AAI09607.1| Replication factor C (activator 1) 3, 38kDa [Bos taurus]
gi|296481817|tpg|DAA23932.1| TPA: replication factor C subunit 3 [Bos taurus]
gi|440909972|gb|ELR59817.1| Replication factor C subunit 3 [Bos grunniens mutus]
Length = 356
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 183/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L Q+ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTADQEIPETD 250
>gi|57529302|ref|NP_001006276.1| replication factor C subunit 3 [Gallus gallus]
gi|53133448|emb|CAG32053.1| hypothetical protein RCJMB04_16m20 [Gallus gallus]
Length = 356
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 186/251 (74%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L ++ H++ A L+ LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ I A S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQS--ITAPSKK-KIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY A+CRLILCCNS SK+ I+SRC
Sbjct: 120 QLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L++R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E+CRVQQ
Sbjct: 180 LSVRVPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYP 239
Query: 242 FT----MPSVD 248
F+ +P +D
Sbjct: 240 FSADQDIPEMD 250
>gi|354499511|ref|XP_003511852.1| PREDICTED: replication factor C subunit 3-like [Cricetulus griseus]
gi|344256817|gb|EGW12921.1| Replication factor C subunit 3 [Cricetulus griseus]
Length = 356
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 183/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H+ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLARLDYHKGQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR ++QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVIIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICNVLSTVCKKEGLALPSKLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTEDQEIPETD 250
>gi|296203698|ref|XP_002749009.1| PREDICTED: replication factor C subunit 3 [Callithrix jacchus]
Length = 356
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 181/243 (74%), Gaps = 3/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FTM 244
FT+
Sbjct: 240 FTV 242
>gi|431903108|gb|ELK09284.1| Replication factor C subunit 3 [Pteropus alecto]
Length = 356
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 180/242 (74%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSSVCKKEGLTLPPQLAYRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|196006351|ref|XP_002113042.1| hypothetical protein TRIADDRAFT_26016 [Trichoplax adhaerens]
gi|190585083|gb|EDV25152.1| hypothetical protein TRIADDRAFT_26016 [Trichoplax adhaerens]
Length = 355
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 182/242 (75%), Gaps = 5/242 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H+D+A+ LK L+ D PHLLFYGP G+GKKT IMA+LR+++G
Sbjct: 3 LWVDKYRPTSLSKLDYHKDLAEQLKNLIQSGDFPHLLFYGPSGAGKKTRIMAMLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK++VE++T++ + + +E+TT++S H+E++PSDA DR V+Q +IK +A+ +
Sbjct: 63 GVEKLRVEHQTFETPSKKK---IEITTVASNYHIEINPSDAKNNDRVVIQGMIKSVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+ E+D+L+++AQH+LRRTMEKY ++CRLILCCNS+S+V A+RSRC
Sbjct: 120 QLDAISQKNFKVIVVMELDRLTKDAQHALRRTMEKYISTCRLILCCNSTSRVIPAVRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +PT ++ +L + KKEGL L A R+AE+S R+LRRA+L E C+VQQ
Sbjct: 180 LGIRVAAPTADE--ALLHGVCKKEGLTLNQELAVRIAEQSKRNLRRALLMCEACKVQQYP 237
Query: 242 FT 243
FT
Sbjct: 238 FT 239
>gi|348667977|gb|EGZ07802.1| hypothetical protein PHYSODRAFT_340838 [Phytophthora sojae]
Length = 352
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 126/243 (51%), Positives = 175/243 (72%), Gaps = 2/243 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRP +L ++ H ++ + L L D PHLL YGP G+GKKT IMALLR ++G
Sbjct: 1 MLWVDKYRPTSLGELDFHPEVTKRLTNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
GA KV++E+K +K A R+ +E+TT++S H+E++PSD G DR VVQ+V+KE+A+
Sbjct: 61 DGALKVRLEHKAFK--APHRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQKVLKEIAQY 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
DT +R FKV++L EVD+LS+ AQH+LRRTMEKY+A+CRL+LCCN+ SKV + +RSR
Sbjct: 119 HMADTNSQRPFKVVLLMEVDRLSKGAQHALRRTMEKYTATCRLVLCCNNPSKVIDPLRSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL +R+ +PT ++I VL+ + KEGL + +A KS R+LRRA+L ETCRVQ
Sbjct: 179 CLGVRVGAPTTDEICGVLQGVCSKEGLAYCAPLGQEIAVKSERNLRRALLMLETCRVQNY 238
Query: 241 RFT 243
F+
Sbjct: 239 PFS 241
>gi|327268843|ref|XP_003219205.1| PREDICTED: replication factor C subunit 3-like [Anolis
carolinensis]
Length = 356
Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 128/242 (52%), Positives = 180/242 (74%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKHRPTSLGKLDYHKEQAARLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++ I A S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQI--ITAPSKK-KIEISTIASNYHLEVNPSDAGISDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY A+CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSTQRDFKVVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ I VL + KKEGL LP A R+AEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIGDICSVLSNVCKKEGLVLPQELAQRIAEKSGRNLRKALLMCEACRVQQHP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|66800141|ref|XP_628996.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74996427|sp|Q54BN3.1|RFC3_DICDI RecName: Full=Probable replication factor C subunit 3; AltName:
Full=Activator 1 subunit 3
gi|60462442|gb|EAL60663.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 119/242 (49%), Positives = 181/242 (74%), Gaps = 2/242 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+DKY+P +LD++ H DI+ NLK ++ D PHLL YGP G+GKKT I+A+L++++G
Sbjct: 1 MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P A K+K++++T+K S+NI ++TT+SS H+E++P +AG DR V+Q +IKE+A++
Sbjct: 61 PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
PID+ FK+++LNEVDKLS++AQH+LRRTMEKY+ CRLILCC+S++KV + I+SR
Sbjct: 119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL IR+ +P++E+I KVL +A E LPS A +A++S +LR A++ E+ + +Q
Sbjct: 179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238
Query: 241 RF 242
F
Sbjct: 239 PF 240
>gi|346470469|gb|AEO35079.1| hypothetical protein [Amblyomma maculatum]
Length = 388
Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 176/242 (72%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP L ++ HQ+ A LKKLV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 36 LWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELYGA 95
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E++ + + + +E+ T++S H+E++PS+AG DR V+QE++K +A+ R
Sbjct: 96 GVERLRIEHQNFVTPSKKK---IEIVTVASNYHIEVNPSEAGIYDRVVIQELLKTVAQTR 152
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++ +R FKV+VL EVDKL+++AQH+LRRTMEKY A+CRL+LCCNS SKV AIRSRC
Sbjct: 153 QLENNTQREFKVVVLTEVDKLTKDAQHALRRTMEKYMATCRLVLCCNSCSKVIPAIRSRC 212
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ E+ + VL +A+KE + LP A +A +S+R+LRRA+L E CR QQ
Sbjct: 213 LGIRVAAPSIEETITVLNLVARKENINLPDTLARTIAAQSHRNLRRAVLMLEACRAQQYP 272
Query: 242 FT 243
F+
Sbjct: 273 FS 274
>gi|307188807|gb|EFN73390.1| Replication factor C subunit 3 [Camponotus floridanus]
Length = 354
Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 177/242 (73%), Gaps = 4/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP TL ++ H + A++LK +V ++D PHLL +GPPG+GKKT I+ +LR+++G
Sbjct: 3 LWVDKYRPTTLAKLDYHLEQAEDLKNMVQKRDFPHLLVHGPPGAGKKTRILCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
AE++KVEN ++ + + LE+ T+SS H E++PSDAG DR VV E+IK A+
Sbjct: 63 AAERLKVENMQFETASKKK---LEILTISSNYHTEVNPSDAGIHDRIVVMELIKATAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G++ FKV++L+ VD+L+R+AQH+LRRTMEKY ++CRLILC NS+S+V AIRSRC
Sbjct: 120 HIDV-GQKEFKVILLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
+ IR+ +PT +I +L I K+EGL LP FA R+ E S R+LRRAIL E C+V+Q
Sbjct: 179 VRIRVPAPTGSEIKNILHSICKREGLHLPDEFANRVIEASGRNLRRAILMLEACKVEQCP 238
Query: 242 FT 243
FT
Sbjct: 239 FT 240
>gi|417399569|gb|JAA46780.1| Putative replication factor c subunit rfc3 [Desmodus rotundus]
Length = 356
Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 181/242 (74%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW DKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWADKYRPCSLSRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCVLRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVD+LS++AQH+LRRTMEKY A+CRLILCC+S+SKV IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDRLSKDAQHALRRTMEKYMATCRLILCCSSTSKVIPPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E+I VL + KKEGL LP A RLAE+S R+LR+A+L+ E CRVQQ
Sbjct: 180 LAVRVPAPSIEEICDVLSAVCKKEGLSLPPQLARRLAEQSCRNLRKALLACEACRVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|427795367|gb|JAA63135.1| Putative replication factor c subunit rfc3, partial [Rhipicephalus
pulchellus]
Length = 382
Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 124/264 (46%), Positives = 182/264 (68%), Gaps = 22/264 (8%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP L ++ HQ+ A LKKLV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 5 LWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELYGA 64
Query: 62 GAEKVKVENKTW------KID----------------AGSRNIDLELTTLSSANHVELSP 99
G E++++E++ + KI+ AG +E+ T++S H+E++P
Sbjct: 65 GVERLRIEHQNFVTPSKKKIEIVTVASNYHIEVNPSEAGIHXXKIEIVTVASNYHIEVNP 124
Query: 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159
S+AG DR V+QE++K +A+ + +++ +R FKV++L EVDKL+++AQH+LRRTMEKY A
Sbjct: 125 SEAGIHDRVVIQELLKTVAQTQQLESNAQREFKVVILTEVDKLTKDAQHALRRTMEKYMA 184
Query: 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219
+CRLILCCNS SKV AIRSRCL IR+ +P+ ++++ VL +A+KEG+ LP A +A
Sbjct: 185 TCRLILCCNSCSKVIPAIRSRCLAIRVAAPSVDEVITVLNLVARKEGITLPDTLAQAIAA 244
Query: 220 KSNRSLRRAILSFETCRVQQLRFT 243
+S+R+LRRA+L E CR QQ F+
Sbjct: 245 QSHRNLRRAVLMLEACRAQQYPFS 268
>gi|281204078|gb|EFA78274.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 346
Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 183/242 (75%), Gaps = 6/242 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+DKY+P +LDQ+ H+DI++NLK ++ D PHLL YGP G+GKKT +MA L++++G
Sbjct: 1 MLWIDKYKPTSLDQMDYHKDISENLKNMILGGDFPHLLVYGPSGAGKKTRVMATLKEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
KVK+ENKT+K + S++I ++TT+SS H+E++P +AG DR V+Q +IK++A++
Sbjct: 61 ANCLKVKIENKTFKHPSSSKSI--QVTTVSSPYHIEINPGEAGSYDRLVIQSIIKDIAQS 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
PID++ V++LNEVDKLS++AQH+LRRTMEKY+ CRLILCC+S+SKV + IRSR
Sbjct: 119 PPIDSQSF----VVILNEVDKLSKDAQHALRRTMEKYANFCRLILCCDSTSKVIDPIRSR 174
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
C+ IR+ +PT+E+IVKVL+ +AKKE L + A AE+SN +LR A+L E+ + ++
Sbjct: 175 CMGIRVPAPTKEEIVKVLQNVAKKERFDLSAEVAGHFAERSNGNLRYALLLLESKKTKEY 234
Query: 241 RF 242
F
Sbjct: 235 PF 236
>gi|345492555|ref|XP_001600907.2| PREDICTED: replication factor C subunit 3-like [Nasonia
vitripennis]
Length = 355
Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 172/242 (71%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H D AQ LK +V + D PHLL YGPPG+GKKT IM +L++++G
Sbjct: 3 LWVDKYRPTSLGKLDYHTDQAQQLKNMVQQGDFPHLLIYGPPGAGKKTRIMCILKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E ++ + + +E+ T+SS H+E++PSD G DR VV +++K A+
Sbjct: 63 GVEKLRMEPMQFETPSKKK---IEIMTISSNYHIEVNPSDVGIYDRVVVMDLVKTTAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FKV++L VD L+++AQH+LRRTMEKY +CRLILC NS+S+V AIRSRC
Sbjct: 120 QIDPTGQREFKVVLLTNVDHLTKDAQHALRRTMEKYVGTCRLILCSNSTSRVLPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +PT ++I +L +AKKE L +P A+RLA S R+LRRAIL E C+V+Q
Sbjct: 180 LGIRVPAPTTDEIKSILHSVAKKESLTIPDELASRLAGSSGRNLRRAILMLEACKVEQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|405950338|gb|EKC18333.1| Replication factor C subunit 3 [Crassostrea gigas]
Length = 354
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/238 (52%), Positives = 179/238 (75%), Gaps = 4/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP +L+++ H+D A LKKLV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKHRPSSLNKLDYHKDQATLLKKLVHGGDFPHLLVYGPSGAGKKTRIMCLLRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E + + N +E++T+SS H+E++PSD G QDR V+QE+IK +A+
Sbjct: 63 GVEKLRIEQHNFTTPS---NKKIEISTISSNYHIEVNPSDVGIQDRVVIQELIKTVAQTN 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCC S+SKV AIRSRC
Sbjct: 120 NLDS-SQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCVSTSKVIPAIRSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L IR+ +P+ ++I ++L+ + KKEG +P+ A R+AEKS R+LRRA+L E C+VQQ
Sbjct: 179 LGIRVAAPSIDEITQILQTVCKKEGCPIPTELAKRVAEKSKRNLRRALLMAEACKVQQ 236
>gi|148226246|ref|NP_001089570.1| replication factor C (activator 1) 3, 38kDa [Xenopus laevis]
gi|67514211|gb|AAH98179.1| MGC115007 protein [Xenopus laevis]
Length = 356
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 183/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H+D A L+ LV D PHLL +GP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPSSLSKLDYHKDQASQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ ++I VL + KKEGL LP A R+AEKS R+LR+A+L E RVQQ
Sbjct: 180 LAVRVPAPSTDEICTVLFSVCKKEGLVLPQDLARRIAEKSGRNLRKALLICEASRVQQYP 239
Query: 242 FT----MPSVD 248
F+ +P D
Sbjct: 240 FSADQDLPETD 250
>gi|301608991|ref|XP_002934079.1| PREDICTED: replication factor C subunit 3-like [Xenopus (Silurana)
tropicalis]
Length = 356
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL +GP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPSSLSKLDYHKEQAVQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +RI +P+ ++I VL + KKEGL LP A ++AEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRICAPSVDEICTVLFSVCKKEGLILPQELARKIAEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
F+ +P D
Sbjct: 240 FSADQDLPETD 250
>gi|332020714|gb|EGI61119.1| Replication factor C subunit 3 [Acromyrmex echinatior]
Length = 354
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/243 (51%), Positives = 178/243 (73%), Gaps = 4/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP TL ++ H + A+NLK +V ++D PHLL +GPPG+GKKT I+ +LR+++G
Sbjct: 3 LWVDKYRPTTLAKLDYHLEQAENLKNMVNKRDFPHLLVHGPPGAGKKTRILCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
AE++K+EN ++ + + +E+ T+SS H E++PSDAG DR VV E+IK A+
Sbjct: 63 AAERLKIENLQFETPSKKK---IEILTISSNYHTEVNPSDAGIYDRIVVMELIKATAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FKV++L+ VD+L+R+AQH+LRRTMEKY ++CRLILC NS+S+V AI+SRC
Sbjct: 120 HIDI-GQREFKVVLLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIQSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
+ IR+ +PT +I +L I K+EGL LP A R+ E SNR+LRRAIL E C+V+Q
Sbjct: 179 VRIRVPAPTAPEIKNILHSICKREGLTLPDELANRMVEVSNRNLRRAILMLEACKVEQYP 238
Query: 242 FTM 244
FT+
Sbjct: 239 FTV 241
>gi|357625732|gb|EHJ76077.1| putative Replication factor C subunit 3 [Danaus plexippus]
Length = 355
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 174/242 (71%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RPK L ++ H+D A LK LV + D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKHRPKDLMKLDYHKDQAVRLKSLVQQSDFPHLLVYGPSGAGKKTRIMCLLRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G+E+++ E + + N +E+ T+SS H+E++P+D G DR V+ +++K +A+
Sbjct: 63 GSERLRQETMHFTTPS---NKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID+ G+R FKV++LNEVD L+++AQH+LRRTMEKY ++CRLIL NS S+V AIRSRC
Sbjct: 120 QIDSAGQREFKVVILNEVDDLTKDAQHALRRTMEKYVSTCRLILIANSISRVITAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +PTE +I VL + KKEGL LPS A R+A+ ++R+LRRA+L E C+VQ
Sbjct: 180 LTIRVPAPTETEIASVLHAVCKKEGLSLPSELAMRIAKSADRNLRRALLMCEACKVQHYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|66523693|ref|XP_624376.1| PREDICTED: replication factor C subunit 3 [Apis mellifera]
Length = 355
Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/242 (50%), Positives = 175/242 (72%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP TL ++ H++ A LK ++ + D PHLL YGP G+GKKT IM ++++++G
Sbjct: 3 LWVDKYRPTTLGKLDYHKEQANYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E T++ + + LE++T+SS H+E++PSD G DR VV +++K A+
Sbjct: 63 GTERLRMETMTFETPSKKK---LEISTISSNYHIEVNPSDVGIYDRVVVMDLVKTTAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G++ FKV++L VD+L+++AQH+LRRTMEKY A+CRLILC NS+S+V AIRSRC
Sbjct: 120 QIDPNGQKEFKVVLLTNVDQLTKDAQHALRRTMEKYVATCRLILCANSTSRVLPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ + I +L I K+EGL LP ATRLAE S R+LRRAIL E C+V+Q
Sbjct: 180 LGIRVPAPSIKNIKDILHTICKREGLTLPDELATRLAETSGRNLRRAILMLEACKVEQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|194761254|ref|XP_001962844.1| GF14225 [Drosophila ananassae]
gi|190616541|gb|EDV32065.1| GF14225 [Drosophila ananassae]
Length = 356
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 124/251 (49%), Positives = 182/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP GSGKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGSGKKTRIMCLLREMYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRSETMTFTTPS---NRKIEVMTVSSNYHLEVNPSDAGIYDRTVVVDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 120 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+++P+E +IV +L+ K+EGL LP A RL EKS R+LRRA+L E +V ++
Sbjct: 180 LGIRVSAPSEPEIVSILQNTCKREGLTLPPELAKRLVEKSERNLRRALLMLEAAKVAKVP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTANQEIPDLD 250
>gi|289741699|gb|ADD19597.1| replication factor C subunit RFC3 [Glossina morsitans morsitans]
Length = 356
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 179/243 (73%), Gaps = 3/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP+ L ++ H++ A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKHRPRELSRLDYHKNQAENLRNLCQQGDFPHLMFYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ S N + + T+ S H+E++PSDAG DR V+ ++IK++A+
Sbjct: 63 GVERLRNEIMTF---TTSSNRKISIMTIGSNYHLEVNPSDAGIYDRVVIIDLIKQVAQVH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FK++VL+EVD+L+++AQH+LRRTMEKY A+CR+IL NS+S++ AIRSRC
Sbjct: 120 QIDPNGQREFKIIVLSEVDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P ++I +L+ I+KKEG+ LPS A R+ +KS R+LR AIL ETC+VQQ
Sbjct: 180 LGIRVAAPRPDEIATILQHISKKEGVVLPSELAKRVVQKSERNLRLAILMLETCKVQQYP 239
Query: 242 FTM 244
FT+
Sbjct: 240 FTV 242
>gi|380021906|ref|XP_003694797.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 3-like
[Apis florea]
Length = 355
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 175/242 (72%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP TL ++ H++ A LK ++ + D PHLL YGP G+GKKT IM ++++++G
Sbjct: 3 LWVDKYRPTTLGKLDYHKEQANYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E T++ + + +E++T+SS H+E++PSD G DR VV +++K A+
Sbjct: 63 GTERLRMETMTFETPSKKK---IEISTISSNYHIEVNPSDVGIYDRIVVMDLVKTTAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G++ FKV++L VD+L+++AQH+LRRTMEKY A+CRLILC NS+S+V AIRSRC
Sbjct: 120 QIDPNGQKEFKVVLLTNVDQLTKDAQHALRRTMEKYVATCRLILCANSTSRVLPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ + I +L I K+EGL LP ATRLAE S R+LRRAIL E C+V+Q
Sbjct: 180 LGIRVPAPSIKNIKDILHTICKREGLTLPDELATRLAETSGRNLRRAILMLEACKVEQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|350424978|ref|XP_003493974.1| PREDICTED: replication factor C subunit 3-like [Bombus impatiens]
Length = 355
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/242 (50%), Positives = 173/242 (71%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L ++ H++ A+ LK ++ + D PHLL YGP G+GKKT IM ++R+++G
Sbjct: 3 LWVDKYRPTVLGKLDYHKEQAEYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G +++++E T++ + + LE+TT+SS H+E++PSD G DR VV +++K A+
Sbjct: 63 GVDRLRMETMTFETPSKKK---LEITTISSNYHIEVNPSDVGIHDRIVVMDLVKTTAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G++ FKV++L VD+L++EAQH+LRRTMEKY +CRLILC NS+S+V AIRSRC
Sbjct: 120 QIDPSGQKEFKVVLLTNVDQLTKEAQHALRRTMEKYVTTCRLILCANSTSRVLPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ I +L I K+EGL LP ATRLAE S R+LRRAIL E C+V+Q
Sbjct: 180 LGIRVPAPSISDIKDILHSICKREGLTLPDELATRLAECSGRNLRRAILMLEACKVEQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|344275394|ref|XP_003409497.1| PREDICTED: replication factor C subunit 3 [Loxodonta africana]
Length = 356
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 179/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + + +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRMEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L EVDKL+R+AQH+LRRTMEKY ++CRLIL C S+SKV IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTRDAQHALRRTMEKYMSTCRLILYCTSTSKVIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E I VL + +KEGL LP+ A RLAEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCRKEGLTLPAQLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|348541665|ref|XP_003458307.1| PREDICTED: replication factor C subunit 3-like [Oreochromis
niloticus]
Length = 356
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 182/243 (74%), Gaps = 3/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L +V H++ A LKKLV D PHLL YGP G+GKKT IM LLR+++GP
Sbjct: 3 LWVDKYRPSSLGKVDFHKEQAAQLKKLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I A S+ +E+ T++S H+E++PSDAG QDR V+QE+IK +A+++
Sbjct: 63 GVEKLRIEHQT--IVAPSKK-KIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV++L EVD+L+++AQH+LRRTMEKY A+CRLILC S+SKV IRSRC
Sbjct: 120 QIQSSTQRDFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCSTSTSKVIGPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ P+ E++ VL + KKEGL LP A +++EKS R+LR+A+L E CRVQQ
Sbjct: 180 LAIRVPLPSIEEVCSVLTSVCKKEGLVLPPELAKQISEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FTM 244
F++
Sbjct: 240 FSV 242
>gi|193659798|ref|XP_001951302.1| PREDICTED: replication factor C subunit 3-like [Acyrthosiphon
pisum]
Length = 355
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 170/241 (70%), Gaps = 3/241 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW DKYRP +L +V HQD AQ+L LV + D PHLLFYGP G+GKKT I+ALLRQ++GP
Sbjct: 3 LWADKYRPNSLQKVDYHQDQAQHLTNLVNQGDFPHLLFYGPNGAGKKTRILALLRQLYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E+ + + N E+ T++S H+E++ SDAG DR VV E+IK +A+
Sbjct: 63 GVERLRTEHMNFMTPS---NKKFEIMTVASNYHIEVNASDAGMYDRIVVMELIKTVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ +R FKV++L EVD+L++EAQ +LRRTMEKY A+CR+ILC NS +V AIRSRC
Sbjct: 120 QLDSTKQRHFKVILLTEVDRLTKEAQQALRRTMEKYMATCRIILCANSIGQVIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E I K+L+ I KKEGL LP A +++ R+LRRAIL E +V+Q
Sbjct: 180 LAVRVPAPTHEDICKILKTICKKEGLTLPDELALIISQNCERNLRRAILMLEASKVKQYP 239
Query: 242 F 242
F
Sbjct: 240 F 240
>gi|330801755|ref|XP_003288889.1| replication factor C subunit [Dictyostelium purpureum]
gi|325081034|gb|EGC34565.1| replication factor C subunit [Dictyostelium purpureum]
Length = 349
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 179/242 (73%), Gaps = 2/242 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+DKY+P +LD++ H+DI+ NLK ++ D PHLL YGP G+GKKT I+A+L++++G
Sbjct: 1 MLWIDKYKPSSLDKMDYHKDISANLKNMIKSGDFPHLLVYGPSGAGKKTRILAILQEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
K+K++++T+K S++I ++TT+SS H+E+SP +AG DR V+Q +IKE+A++
Sbjct: 61 VNVNKLKIDHRTFKHPTSSKSI--QITTISSHYHIEISPGEAGSYDRVVIQTIIKEIAQS 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
PI+ FK+++LNEVDKLS++AQH+LRRTMEKY+ CRLILCC+S++KV + I+SR
Sbjct: 119 PPIENADLGPFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL IRI +PT E+I KVL +A+ E +LPS + +A + N +LR A+L E+ + +Q
Sbjct: 179 CLGIRIPAPTNEEIEKVLSKVAQSEKFELPSKLSQNIANQCNGNLRYALLLLESQKAKQY 238
Query: 241 RF 242
F
Sbjct: 239 PF 240
>gi|224043287|ref|XP_002195786.1| PREDICTED: replication factor C subunit 3 [Taeniopygia guttata]
Length = 356
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/251 (50%), Positives = 184/251 (73%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW DK+RP L ++ H++ A L+ LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWADKHRPGALARLDFHREQAARLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ I A S+ +E++T++S H+E++PSDAG DR V+QE++K +A+++
Sbjct: 63 GVEKLRIEHQS--ITAPSKK-KIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T +R FKV++L +VDKL+++AQH+LRRTMEKY A+CRLILCCNS SK+ I+SRC
Sbjct: 120 QLETSTQRDFKVVLLTDVDKLTKDAQHALRRTMEKYMATCRLILCCNSVSKIIGPIQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ E I VL + KKEGL LP A R+AEKS R+LR+A+L E+CRVQQ
Sbjct: 180 LAIRVPAPSIEDICHVLSSVCKKEGLTLPQELAQRIAEKSGRNLRKALLMCESCRVQQYP 239
Query: 242 FT----MPSVD 248
F+ +P +D
Sbjct: 240 FSADQDIPEMD 250
>gi|312381002|gb|EFR26856.1| hypothetical protein AND_06782 [Anopheles darlingi]
Length = 378
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/271 (46%), Positives = 185/271 (68%), Gaps = 27/271 (9%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD+YRP+ L ++ H+ A L L ++ D PHL+FYGP G+GKKT I+ LLR+++GP
Sbjct: 3 LWVDRYRPRELAKLDYHKTQANQLINLCSQGDFPHLMFYGPSGAGKKTRIICLLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ N+ S N +E+ T+SS H+E++PSD G DR V+ ++IK++A+ +
Sbjct: 63 GVERLR--NEVMHFTTPS-NKKIEIMTVSSNYHIEVNPSDVGIYDRVVITDMIKQIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FK +VL+EVD+L+++AQH+LRRTMEKY A+CRL+LC NS+S++ A++SRC
Sbjct: 120 QIDPTGQRDFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRIIPAVKSRC 179
Query: 182 LNIRINSPTEEQIVKVL--------------------EFIAKKEGLQLPSGFATRLAEKS 221
L IR++SPTEE+I+ ++ + I KKEGL +P A R+A+KS
Sbjct: 180 LGIRVSSPTEEEIIGIMNVSKGVSSIHCSFADECLSPQTICKKEGLHIPPELAQRIAKKS 239
Query: 222 NRSLRRAILSFETCRVQQLRFT----MPSVD 248
R+LRRAILS E C+VQQ FT +P +D
Sbjct: 240 ERNLRRAILSLEACKVQQYPFTANQDVPDMD 270
>gi|383854644|ref|XP_003702830.1| PREDICTED: replication factor C subunit 3-like [Megachile
rotundata]
Length = 355
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 174/242 (71%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP TL ++ HQ+ A+ L+ +V + D PHLL YGP G+GKKT I+ +L++++G
Sbjct: 3 LWVDKYRPTTLGKLDYHQEQAEYLRNMVKKGDFPHLLVYGPSGAGKKTRILCILKELYGN 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+ ++ + + LE+TT+SS H+E++PSD G DR VV +++K A+
Sbjct: 63 GVEKLRMESMAFETPSKKK---LEITTISSNYHIEVNPSDVGIYDRVVVMDLVKTTAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FKV++L VD+L+++AQH+LRRTMEKY A+CR+ILC NS+S+V AI+SRC
Sbjct: 120 QIDPSGQREFKVVLLTNVDQLTKDAQHALRRTMEKYVATCRIILCANSTSRVLPAIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ I +L I K+EGL LP+ R+AE S R+LRRAIL E CRV+Q
Sbjct: 180 LGIRVPAPSISDIKSILHSICKREGLTLPNELGIRVAEASGRNLRRAILMLEACRVEQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|391337617|ref|XP_003743163.1| PREDICTED: replication factor C subunit 3-like [Metaseiulus
occidentalis]
Length = 362
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/249 (50%), Positives = 176/249 (70%), Gaps = 10/249 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L+VDKYRPK L+++ H+ A LK LV D PHLL YGP G+GKKT IMA L+++FG
Sbjct: 3 LYVDKYRPKDLEKLDYHKKQASWLKGLVNGGDLPHLLVYGPSGAGKKTRIMATLKELFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E + + + + +E+ TLSS H+E++PSD G QDR V+QE++K +A+ +
Sbjct: 63 GVERLRIEQQVFTTQSKKK---IEIRTLSSNYHIEVNPSDVGIQDRVVIQELLKNIAQTQ 119
Query: 122 PI-------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ D + K+ FKV++L EVD+LSR+AQH+LRRTMEKY SCRLIL CNS++KV
Sbjct: 120 NVAVTAVQDDKERKKAFKVVILTEVDRLSRDAQHALRRTMEKYMQSCRLILVCNSTTKVI 179
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
AIRSRCL IR+ +P+ +IV +L +IAKKE L LP A ++A+ S +LR+AIL E
Sbjct: 180 PAIRSRCLGIRVPAPSSSEIVGILNYIAKKESLNLPQELAQKIAQSSTGNLRKAILMLEA 239
Query: 235 CRVQQLRFT 243
CRV+Q F+
Sbjct: 240 CRVKQYPFS 248
>gi|223998512|ref|XP_002288929.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220976037|gb|EED94365.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 359
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 126/240 (52%), Positives = 170/240 (70%), Gaps = 6/240 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVF 59
MLWVDK+RP L Q+ H + L+ L + PHLLFYGPPGSGKKT I ALLR VF
Sbjct: 1 MLWVDKHRPTRLTQLTYHGTLTARLESLSADPGGLPHLLFYGPPGSGKKTRIAALLRSVF 60
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G G+E+++++ +T+ N +E+ +SS H+E+SP DAG DR+V+Q+VIKEMA
Sbjct: 61 GHGSERLRLDKRTFTTPT---NRTVEINMISSNYHIEMSPGDAGLNDRFVIQDVIKEMAS 117
Query: 120 NRPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
++ I T G +KV+VL EVDKL+R+AQ +LRRTMEKYS+SCRLILCCN+ SKV + +
Sbjct: 118 SKNIATVGTANNEYKVVVLVEVDKLTRQAQAALRRTMEKYSSSCRLILCCNNPSKVIDPV 177
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
RSRCL IR+ +P+ ++I VL+ +A+KE + LP A LA SNR+LRRA+L E+C V
Sbjct: 178 RSRCLGIRVAAPSHDEIATVLKTVARKESITLPDELAISLARSSNRNLRRALLMLESCHV 237
>gi|195384848|ref|XP_002051124.1| GJ14536 [Drosophila virilis]
gi|194147581|gb|EDW63279.1| GJ14536 [Drosophila virilis]
Length = 356
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 175/242 (72%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E ++ + N +E+ T+ S H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRNETMSFTTPS---NRKIEVMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+IL NS+S++ AIRSRC
Sbjct: 120 QIDINGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+E ++ VL+ K+EGL LP A R+ EKS R++RRA+L E +VQQ
Sbjct: 180 LGIRVPAPSENEMTAVLQSTCKREGLVLPPELAKRVVEKSERNMRRALLMLEASKVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|225706298|gb|ACO08995.1| Replication factor C subunit 3 [Osmerus mordax]
Length = 356
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 181/243 (74%), Gaps = 3/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW+DKYRP +L ++ H++ A LK LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWLDKYRPSSLGKLDYHKEQAIQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T I A S+ +E+ T++S H+E++PSDAG DR V+QE+IK MA+++
Sbjct: 63 GVEKLRIEHQT--ITAPSKK-KIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTMAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I T +R FKV++L EVD+L+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRC
Sbjct: 120 QIQTSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIGPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ P+ E++ VL + +KEGL LP A +++EKS R+LR+A+L E CRVQQ
Sbjct: 180 LAIRVPLPSTEEVCGVLSAVCRKEGLTLPPELAQQISEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FTM 244
F++
Sbjct: 240 FSV 242
>gi|195118724|ref|XP_002003886.1| GI18150 [Drosophila mojavensis]
gi|193914461|gb|EDW13328.1| GI18150 [Drosophila mojavensis]
Length = 356
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 176/242 (72%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ N+T S N +++ T+ S H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLR--NETMNFTTPS-NRKIDIMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+IL NS+S++ AIRSRC
Sbjct: 120 QIDVNGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+E +++ VL+ K+EGL LP A R+ EKS R++RRA+L E +VQQ
Sbjct: 180 LGIRVPAPSEAEMIAVLQNTCKREGLVLPPELAKRVVEKSERNMRRALLMLEASKVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|328866732|gb|EGG15115.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 352
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 175/243 (72%), Gaps = 2/243 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKY+P +LD + H D++ +LK ++ D PHLL YGP G+GKKT IMA+L++V+G
Sbjct: 1 MLWVDKYKPTSLDHMDYHPDLSLHLKNMIKSSDFPHLLVYGPSGAGKKTRIMAILKEVYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P K+K++++T+K S N +L++TT+SS H+E++ +AG DR +VQ +IKE+A++
Sbjct: 61 PNCLKLKIDHRTFK--HPSTNKNLQVTTISSPYHIEINAGEAGSNDRLIVQSIIKEIAQS 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
PID+ FK+++LNEVDKLS++AQH+LRRTMEKY+ASCRLILCC+S+S+V + IRSR
Sbjct: 119 PPIDSSVFGAFKIVILNEVDKLSKDAQHALRRTMEKYAASCRLILCCDSTSRVIDPIRSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL IR+ +P+ + VL +A KE +LP + +A K+ +LR A+L E + +Q
Sbjct: 179 CLGIRVPAPSIADVQNVLNIVATKEKFELPKKISEEIAVKAKGNLRYALLMLEAKKAKQY 238
Query: 241 RFT 243
F
Sbjct: 239 PFV 241
>gi|308321967|gb|ADO28121.1| replication factor c subunit 3 [Ictalurus furcatus]
Length = 356
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 179/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A LK LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPMSLAKLDYHKEQANQLKSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ I A S+ +E+ T++S H+E++PSDAG DR V+QE+IK +A+++
Sbjct: 63 GVEKLRIEHQS--IVAPSKK-KIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV++L E D+L+++AQH+LRRTMEKY +CRLILCCNS+SKV IRSRC
Sbjct: 120 QIQSSTQREFKVVLLTEADRLTKDAQHALRRTMEKYMGTCRLILCCNSTSKVISPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ P+ E++ VL + KKEGL LP+ A R+AEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPLPSTEEVCSVLMSVCKKEGLILPTELAKRIAEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
F+
Sbjct: 240 FS 241
>gi|225713906|gb|ACO12799.1| Replication factor C subunit 3 [Lepeophtheirus salmonis]
Length = 296
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 178/243 (73%), Gaps = 4/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L+++ A L+ LV +D PHLL +GP G+GKKT I+ALLR+++GP
Sbjct: 3 LWVDKYRPNKLNKLDFGLKQAAYLETLVKSEDFPHLLIHGPSGAGKKTRIVALLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E++ ++ + + LE+ T++S H+EL+PSD G DR V+QE+IK A +
Sbjct: 63 GVERLRIEHQNFETPSKKK---LEIMTIASNYHIELNPSDVGIYDRVVIQELIKNTASAQ 119
Query: 122 PIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
I +R FKV++LNEVDKL+++AQH+LRRTMEKY+++CRLILC NS+SK+ AI+SR
Sbjct: 120 QIHGDSQRASFKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSR 179
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL+IRI +P+ + I+++L ++KKEG LP A R+ EKSNR+LRRA+L E C+V+Q
Sbjct: 180 CLSIRIPAPSADDIIQILVTVSKKEGCLLPMELARRITEKSNRNLRRALLLTEACKVKQY 239
Query: 241 RFT 243
F
Sbjct: 240 PFV 242
>gi|19921136|ref|NP_609494.1| replication factor C 38kD subunit [Drosophila melanogaster]
gi|22946236|gb|AAF53076.2| replication factor C 38kD subunit [Drosophila melanogaster]
gi|220942726|gb|ACL83906.1| RfC38-PA [synthetic construct]
gi|220952880|gb|ACL88983.1| RfC38-PA [synthetic construct]
Length = 356
Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 179/251 (71%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRSETMTFTTPS---NRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 120 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P E +IV +L+ K+EGL LP A R+ +KS R+LRRA+L E +V +
Sbjct: 180 LGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTANQEIPDLD 250
>gi|195472100|ref|XP_002088340.1| GE12972 [Drosophila yakuba]
gi|194174441|gb|EDW88052.1| GE12972 [Drosophila yakuba]
Length = 356
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 179/251 (71%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRSETMTFTTPS---NRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 120 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P E +IV +L+ K+EGL LP A R+ +KS R+LRRA+L E +V +
Sbjct: 180 LGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTANQEIPDLD 250
>gi|195030434|ref|XP_001988073.1| GH10966 [Drosophila grimshawi]
gi|193904073|gb|EDW02940.1| GH10966 [Drosophila grimshawi]
Length = 356
Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 175/242 (72%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ N+T S N +E+ T+ S H+E++PSDAG DR VV ++IK++A+ +
Sbjct: 63 GVERLR--NETMNFTTPS-NRKIEVMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+IL NS+S++ AIRSRC
Sbjct: 120 QIDINGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+E + VL+ K+EGL LP A R+ +KS R++RRA+L E +VQQ
Sbjct: 180 LGIRVPAPSESDMAAVLQNTCKREGLVLPPELAKRVVDKSERNMRRALLMLEASKVQQYP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|28317156|gb|AAD46852.2|AF160912_1 LD06837p, partial [Drosophila melanogaster]
Length = 395
Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 179/251 (71%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 42 LWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 101
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 102 GVERLRSETMTFTTPS---NRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 158
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 159 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 218
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P E +IV +L+ K+EGL LP A R+ +KS R+LRRA+L E +V +
Sbjct: 219 LGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAP 278
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 279 FTANQEIPDLD 289
>gi|194861801|ref|XP_001969859.1| GG10322 [Drosophila erecta]
gi|190661726|gb|EDV58918.1| GG10322 [Drosophila erecta]
Length = 356
Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 179/251 (71%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H++ A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDFHKEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRSETMTFTTPS---NRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 120 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P E +IV +L+ K+EGL LP A RL +KS R+LRRA+L E +V +
Sbjct: 180 LGIRVAAPNETEIVSILQNTCKREGLALPVELAKRLVDKSERNLRRALLMLEAAKVAKAP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTANQEIPDLD 250
>gi|195434074|ref|XP_002065028.1| GK15241 [Drosophila willistoni]
gi|194161113|gb|EDW76014.1| GK15241 [Drosophila willistoni]
Length = 356
Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 176/242 (72%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ HQ+ A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDYHQEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRNETMTFTTPS---NRKIEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R F+V+V++E D+L+++AQH+LRRTMEKY A+CR+IL NS+S++ AIRSRC
Sbjct: 120 QIEINGQREFRVIVVSEADELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+E +I+ +L+ K+EGL LP A R+ +KS R+LRRA+L E +V +
Sbjct: 180 LGIRVAAPSETEIINILQSTCKREGLVLPVELAKRVVDKSERNLRRALLMLEASKVAKSP 239
Query: 242 FT 243
FT
Sbjct: 240 FT 241
>gi|307203721|gb|EFN82681.1| Replication factor C subunit 3 [Harpegnathos saltator]
Length = 354
Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 122/242 (50%), Positives = 175/242 (72%), Gaps = 4/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP TL ++ H + A++LK +V ++D PHLL +GPPG+GKKT I+ +L++++G
Sbjct: 3 LWVDKYRPTTLAKLDYHLEQAEDLKNMVQKRDFPHLLVHGPPGAGKKTRILCILKELYGN 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
AE++K EN ++ + + LE+ T+SS H+E++PSDAG DR VV E+IK A+
Sbjct: 63 AAERLKTENMQFETASKKK---LEILTISSNYHIEVNPSDAGIHDRIVVMELIKATAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G+ FKV++L+ VD+L+R+AQH+LRRTMEKY ++CRLILC NS+S+V AIRSRC
Sbjct: 120 HIDI-GQTEFKVVLLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
+ IR+ +PT +I +L I ++EGL LP A R+ E S+R+LRRAIL E +V+Q
Sbjct: 179 VRIRVPAPTASEIKNILHSICRREGLSLPDELANRIIEASDRNLRRAILMLEASKVEQYP 238
Query: 242 FT 243
FT
Sbjct: 239 FT 240
>gi|147776609|emb|CAN65125.1| hypothetical protein VITISV_012412 [Vitis vinifera]
Length = 158
Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 113/132 (85%), Positives = 126/132 (95%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD +IVH D+AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMA+LRQ+FG
Sbjct: 1 MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P A+KVKVENKTWKIDAG+R IDLELTTLSS +H+EL+P DAGFQDRY+VQE+IKEMAKN
Sbjct: 61 PSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120
Query: 121 RPIDTKGKRGFK 132
RPIDTKGK+GF+
Sbjct: 121 RPIDTKGKKGFR 132
>gi|318904079|ref|NP_001187655.1| replication factor C subunit 3 [Ictalurus punctatus]
gi|308323615|gb|ADO28943.1| replication factor c subunit 3 [Ictalurus punctatus]
Length = 356
Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 126/242 (52%), Positives = 178/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A +LK LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPTSLAKLDYHKEQANHLKSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ I A S+ +E+ ++S H+E++PSDAG DR V+QE+IK +A+++
Sbjct: 63 GVEKLRIEHQS--IVAPSKK-KIEINAIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV++L EVD+L+++AQH LRRTMEKY +CRLILCCNS+SKV IRSRC
Sbjct: 120 QIQSSTQREFKVVLLTEVDRLTKDAQHVLRRTMEKYMGTCRLILCCNSTSKVISPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ P+ E++ V+ + KKEGL LP A R+AEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPLPSTEEVCSVMMSVCKKEGLILPPELAKRIAEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
F+
Sbjct: 240 FS 241
>gi|156230598|gb|AAI52282.1| Replication factor C (activator 1) 3 [Danio rerio]
Length = 356
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 178/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A LK LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ + + LE+ T++S H+E++PSDAG DR V+QE+IK +A+++
Sbjct: 63 GVEKLRIEHQSITTPSKKK---LEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV++L EVD+L+++AQH+LRRTMEKY A+CRLILCCNS+SKV IRSRC
Sbjct: 120 QIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ P+ E++ VL + +KEGL LP A ++AEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
F+
Sbjct: 240 FS 241
>gi|41393079|ref|NP_958865.1| replication factor C subunit 3 [Danio rerio]
gi|27503431|gb|AAH42327.1| Replication factor C (activator 1) 3 [Danio rerio]
gi|182891582|gb|AAI64808.1| Rfc3 protein [Danio rerio]
Length = 356
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/251 (50%), Positives = 181/251 (72%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A LK LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+++ + + LE+ T++S H+E++PSDAG DR V+QE+IK +A+++
Sbjct: 63 GVEKLRIEHQSITTPSKKK---LEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV++L EVD+L+++AQH+LRRTMEKY A+CRLILCCNS+SKV IRSRC
Sbjct: 120 QIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ P+ E++ VL + +KEGL LP A ++AEKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FT----MPSVD 248
F+ +P D
Sbjct: 240 FSPDQDIPETD 250
>gi|195340081|ref|XP_002036645.1| GM11127 [Drosophila sechellia]
gi|194130525|gb|EDW52568.1| GM11127 [Drosophila sechellia]
Length = 351
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 178/251 (70%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDFHKDQAANLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRSETMTFTTPS---NRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 120 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P E +IV +L+ K+EGL LP A R+ +KS R+LRRA+L E +V +
Sbjct: 180 LGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTANQEIPDLD 250
>gi|432895956|ref|XP_004076244.1| PREDICTED: replication factor C subunit 3-like [Oryzias latipes]
Length = 356
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/242 (52%), Positives = 178/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A LK LV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPTSLGKLDYHKEQATQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+ T I A S+ +E+ T++S H+E++PSDAG QDR V+QE+IK +A+++
Sbjct: 63 GVEKLRIEHHT--IVAPSKK-KIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV++L EVD+L+++AQH+LRRTMEKY ++CRLILC S+SKV IRSRC
Sbjct: 120 QIQSSTQREFKVVILTEVDRLTKDAQHALRRTMEKYMSTCRLILCSTSTSKVIGPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ P+ E++ VL + KKEGL LP A +++EKS R+LR+A+L E CRVQQ
Sbjct: 180 LAVRVPLPSTEEVCSVLTSVCKKEGLNLPPELAKQISEKSGRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
F+
Sbjct: 240 FS 241
>gi|290561887|gb|ADD38341.1| Replication factor C subunit 3 [Lepeophtheirus salmonis]
Length = 353
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 177/243 (72%), Gaps = 7/243 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP LD + A L+ LV +D PHLL +GP G+GKKT I+ALLR+++GP
Sbjct: 3 LWVDKYRPNKLDFGLKQ---AAYLETLVKSEDFPHLLIHGPSGAGKKTRIVALLRELYGP 59
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E++ ++ + + LE+ T++S H+EL+PSD G DR V+QE+IK A +
Sbjct: 60 GVERLRIEHQNFETPSKKK---LEIMTIASNYHIELNPSDVGIYDRVVIQELIKNTASAQ 116
Query: 122 PIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
I +R FKV++LNEVDKL+++AQH+LRRTMEKY+++CRLILC NS+SK+ AI+SR
Sbjct: 117 QIHGDSQRASFKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSR 176
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL+IRI +P+ + I+++L ++KKEG LP A R+ EKSNR+LRRA+L E C+V+Q
Sbjct: 177 CLSIRIPAPSADDIIQILVTVSKKEGCLLPMELARRITEKSNRNLRRALLLTEACKVKQY 236
Query: 241 RFT 243
F
Sbjct: 237 PFV 239
>gi|225709786|gb|ACO10739.1| Replication factor C subunit 3 [Caligus rogercresseyi]
Length = 357
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 176/244 (72%), Gaps = 5/244 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L ++ A L+ LV D PHLL +GP G+GKKT ++ALLR+++GP
Sbjct: 3 LWVDKYRPTKLSKLDYGLSQASYLETLVKGVDFPHLLVHGPSGAGKKTRVLALLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E++ + + + LE+ T++S H+E++PSD G DR V+QE+IK A ++
Sbjct: 63 GVERLRLEHRNFVTPSKKK---LEIMTMASNYHIEVNPSDVGIYDRVVIQELIKNTASSQ 119
Query: 122 PI--DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
I GK FKV++L EVDKL+++AQH+LRRTMEKY+++CRLILC NS+SKV AIRS
Sbjct: 120 QIHGSDSGKADFKVVILTEVDKLTKDAQHALRRTMEKYTSTCRLILCANSTSKVIPAIRS 179
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RCL+IR+ +P+ ++ +++ +AKKEG QLP A R+AE+S R+LRRA+L E C+V+Q
Sbjct: 180 RCLSIRVPAPSIAEVTQIIISVAKKEGCQLPQELAKRIAERSQRNLRRALLLTEACKVKQ 239
Query: 240 LRFT 243
FT
Sbjct: 240 YPFT 243
>gi|322794004|gb|EFZ17242.1| hypothetical protein SINV_07523 [Solenopsis invicta]
Length = 353
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 172/243 (70%), Gaps = 4/243 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPKTL + H + A++LK +V ++D PHLL +GP G+GKKT I +LR+++G
Sbjct: 3 LWVDKYRPKTLANLDYHLEQAEDLKNMVQKRDFPHLLIHGPSGAGKKTRISCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
AE++K EN ++ + + LE+ T SS H E++PSDAG DR VV E+IK A+
Sbjct: 63 AAERLKTENMQFETPSKKK---LEILTNSSNYHTEVNPSDAGIYDRIVVMELIKATAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID K FKV++L+ VD+L+++AQH+LRRTMEKY ++CRLILC NS+S+V AIRSRC
Sbjct: 120 HIDISQKE-FKVVLLSNVDQLTKDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
+ IR+ +PT +I +L I K+EGL LP A RL E S+R+LRRAIL E C+V+Q
Sbjct: 179 VRIRVPAPTASEIKSILHSICKREGLTLPDELANRLIEASDRNLRRAILMLEACKVEQYP 238
Query: 242 FTM 244
FT+
Sbjct: 239 FTV 241
>gi|328772230|gb|EGF82269.1| hypothetical protein BATDEDRAFT_16167 [Batrachochytrium
dendrobatidis JAM81]
Length = 353
Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 123/251 (49%), Positives = 172/251 (68%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +LD++ H D ++ L +L + PHLL YGP G+GKKT + A LRQ+FGP
Sbjct: 3 LWVDKYRPLSLDKLSYHPDTSKLLCQLANSDEFPHLLVYGPSGAGKKTRVTATLRQLFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K+E + ++ + N LE+ +SS HVE++PSD G DR +VQE+IKE+A+ +
Sbjct: 63 GVEKLKIETRQFETPS---NRKLEINIVSSNYHVEITPSDVGIYDRIIVQELIKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ K+ FKV+VLNE D LSR+AQ LRRTMEKY + R+ILCCN +SK+ IRSRC
Sbjct: 120 QLDSSAKKQFKVVVLNEADSLSRDAQAGLRRTMEKYMGNMRMILCCNVTSKIISPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ +I VL+ +AK+E +L S FA R+A +S +LR+A+L E + QQ
Sbjct: 180 LLIRVAAPSFTEIQTVLQNVAKEENFKLSSEFAQRIATESEGNLRKALLVLEAAKAQQYP 239
Query: 242 FT----MPSVD 248
FT +P D
Sbjct: 240 FTNNQVLPKTD 250
>gi|339256702|ref|XP_003370227.1| replication factor C subunit 3 [Trichinella spiralis]
gi|316965626|gb|EFV50315.1| replication factor C subunit 3 [Trichinella spiralis]
Length = 355
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 174/234 (74%), Gaps = 3/234 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LWVDK+RPK L Q+ H+ ++ LK LV + D PHLLFYGP G+GKKT I LR+++G
Sbjct: 2 LLWVDKHRPKQLSQLSYHKSLSVRLKYLVAQGDFPHLLFYGPSGAGKKTRIWCTLRELYG 61
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G EK+++E+K+ + +G + +E+ +SS H++L+PSD DR V+Q+VIK MA+
Sbjct: 62 AGVEKIRLEHKSIETPSGKK---VEIALVSSNYHIQLNPSDVAIYDRVVIQDVIKHMAQT 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ ++++ +R FKV+VL EVDKL+REAQH+LRRTMEKYS+SCR+ILCC S+SKV + I+SR
Sbjct: 119 QQLESRTQRAFKVIVLTEVDKLTREAQHALRRTMEKYSSSCRIILCCQSTSKVIQPIQSR 178
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
CL IR+ +PT+E+I ++L+ + K E +L + + +K++ +LRRA+LS E+
Sbjct: 179 CLPIRVPAPTDEEITEILQRVLKLENCRLSAELIQEIVQKADGNLRRALLSAES 232
>gi|47227059|emb|CAG00421.1| unnamed protein product [Tetraodon nigroviridis]
Length = 356
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 178/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP ++ ++ H++ A LK LV D PHLL YGPPG+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPTSISKLDYHKEQAAQLKNLVQCGDFPHLLVYGPPGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + A S+ +E+ T++S H+E++ SDAG QDR V+QE+IK +A+++
Sbjct: 63 GVEKLRIEHQT--VVAPSKK-KIEINTIASNYHLEVNASDAGNQDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV+VL EVD+L+++AQH+LRRTMEKY ++CRLILC S+SKV I+SRC
Sbjct: 120 QIQSSTQRDFKVVVLTEVDRLTKDAQHALRRTMEKYMSTCRLILCSTSTSKVIGPIQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ P+ E++ VL + KKEGL LP A +++E S R+LRRA+L E CRVQQ
Sbjct: 180 LAVRVPLPSTEEVCGVLTAVCKKEGLHLPPELARQISEASGRNLRRALLMCEACRVQQYP 239
Query: 242 FT 243
F+
Sbjct: 240 FS 241
>gi|125986059|ref|XP_001356793.1| GA19473 [Drosophila pseudoobscura pseudoobscura]
gi|195148330|ref|XP_002015127.1| GL18586 [Drosophila persimilis]
gi|54645119|gb|EAL33859.1| GA19473 [Drosophila pseudoobscura pseudoobscura]
gi|194107080|gb|EDW29123.1| GL18586 [Drosophila persimilis]
Length = 356
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 179/251 (71%), Gaps = 7/251 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H++ A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELTKLDFHKEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRSETMTFTTPS---NRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 120 QIEINGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIMSVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+E ++ +L+ K+EGL LP A R+ +KS R+LRRA+L E +V +
Sbjct: 180 LGIRVAAPSEAEMTAILQSTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKSP 239
Query: 242 FT----MPSVD 248
FT +P +D
Sbjct: 240 FTAQQEVPDLD 250
>gi|340724560|ref|XP_003400649.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 3-like
[Bombus terrestris]
Length = 351
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 168/242 (69%), Gaps = 7/242 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L ++ D +N + + D PHLL YGP G+GKKT IM ++R+++G
Sbjct: 3 LWVDKYRPTALGKL----DYHKNKQTIXKHGDFPHLLVYGPSGAGKKTRIMCIIRELYGS 58
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G +++++E T++ + + LE+TT+SS H+E++PSD G DR VV +++K A+
Sbjct: 59 GVDRLRMETMTFETPSKKK---LEITTISSNYHIEVNPSDVGIHDRVVVMDLVKTTAQTH 115
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID G++ FKV++L VD+L++EAQH+LRRTMEKY +CRLILC NS+S+V AIRSRC
Sbjct: 116 QIDPSGQKEFKVVLLTNVDQLTKEAQHALRRTMEKYVTTCRLILCANSTSRVLPAIRSRC 175
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ +P+ I +L I K+EGL LP ATRLAE S R+LRRAIL E C+V+Q
Sbjct: 176 LGIRVPAPSISDIKDILHSICKREGLTLPDELATRLAECSGRNLRRAILMLEACKVEQYP 235
Query: 242 FT 243
FT
Sbjct: 236 FT 237
>gi|242011379|ref|XP_002426428.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510533|gb|EEB13690.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 355
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 167/242 (69%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW +KYRP L ++ H D A+ LK L+ + D PHLL YG PGSGKKT IM LL++++GP
Sbjct: 3 LWCEKYRPSNLSKLDYHLDQAKQLKNLINKGDFPHLLVYGTPGSGKKTRIMCLLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GA K+K + + + +++ TLSS H+E++PSD G DR V+ E++K+ A
Sbjct: 63 GAWKLKTCQMNFTTPSNKK---IDIMTLSSNYHIEVNPSDVGIYDRVVITELVKKTASTY 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+++ ++ FK+L+L +D+L+ +AQH+LR+TME Y+ +CRLILC NS S + AI+SRC
Sbjct: 120 QLNSSKQKSFKILLLQGIDELTADAQHALRKTMENYNVTCRLILCGNSISNIIPAIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L+IRI +P+ E I K+L FI KKEG+QLP A +A KS+R+LRRAIL E CRVQQ
Sbjct: 180 LHIRIPAPSYEDICKILLFICKKEGIQLPETLAYNIARKSDRNLRRAILMCEACRVQQFP 239
Query: 242 FT 243
T
Sbjct: 240 LT 241
>gi|219112623|ref|XP_002178063.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410948|gb|EEC50877.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 361
Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 121/248 (48%), Positives = 166/248 (66%), Gaps = 12/248 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVF 59
MLWVDKYRP LD + H I+Q L L + + PHL FYGP G+GKKT I ALL ++
Sbjct: 1 MLWVDKYRPVKLDDLSYHDTISQRLSSLASNPESMPHLFFYGPAGAGKKTRITALLGSLY 60
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
GPGA ++K++ +T+ +EL ++S H+E+SP DAG DR+V+Q+VIKEMA
Sbjct: 61 GPGASRLKLDKRTFTTPTKR---TVELNMITSNYHIEISPGDAGLNDRFVIQDVIKEMAS 117
Query: 120 NRPIDTK--------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
N+ + G FK +VL EVD+LSR+AQ +LRRTMEKY+++CRLIL CN+ S
Sbjct: 118 NKNVGASATSSERKSGAATFKTVVLVEVDRLSRQAQAALRRTMEKYASTCRLILVCNNQS 177
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
KV E +RSRCL IR+ +PTE++I KVL+ ++ E LP A +A +S+R++RRAIL
Sbjct: 178 KVIEPVRSRCLGIRVAAPTEDEICKVLKSVSINESFMLPDELAINIARESSRNVRRAILM 237
Query: 232 FETCRVQQ 239
E C VQ+
Sbjct: 238 LEACYVQK 245
>gi|91089203|ref|XP_966829.1| PREDICTED: similar to replication factor C subunit 3 [Tribolium
castaneum]
gi|270012468|gb|EFA08916.1| hypothetical protein TcasGA2_TC006622 [Tribolium castaneum]
Length = 354
Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 169/239 (70%), Gaps = 3/239 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW DKYRPK L + H+ A +L+ L + D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 1 MLWADKYRPKELSSLSYHKQQALDLRNLTKDGDFPHLLVYGPLGAGKKTRIMCLLRELYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG +++KVE + + + LE++T+ S H+E++PSD G DR V+ +VIK +A++
Sbjct: 61 PGVDRLKVETMNFTTPSNKK---LEISTVGSNYHIEVNPSDVGINDRVVIMDVIKNVAQS 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ ++ +R FKV++L +VD L+++AQH+LRRTMEKY A+CR+ILC S S+V AIRSR
Sbjct: 118 QQLNANTQREFKVILLTDVDNLTKDAQHALRRTMEKYIANCRIILCTTSISRVIPAIRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
CL IR+ +P+ + I +L +A KE + LP A R+AEKS+R+LRRA+L E C+VQ+
Sbjct: 178 CLCIRVPAPSIDDITSILTNVAAKESVSLPPELAKRIAEKSDRNLRRALLMCEACKVQK 236
>gi|321248728|ref|XP_003191220.1| subunit of DNA Replication factor C (RF-C); Rfc5p [Cryptococcus
gattii WM276]
gi|317457687|gb|ADV19433.1| Subunit of DNA Replication factor C (RF-C), putative; Rfc5p
[Cryptococcus gattii WM276]
Length = 356
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 168/238 (70%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLD + H ++ LK L D PH+LFYGP G+GKKT IM LR+++GP
Sbjct: 3 LWVDKYRPRTLDDLHYHDGLSSRLKSLAASGDFPHILFYGPSGAGKKTRIMCTLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK++++ + + + +R +D+ + + S H+EL+PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKLRIDQRVF-VTPSNRKLDVNV--VQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+++NE D L+R+AQ +LRRTMEKY A+ RLILC NS+SK+ IRSRC
Sbjct: 120 QVDLNAKQRFKVVIINEADALTRDAQAALRRTMEKYMANMRLILCANSTSKIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +PT++++ VL ++AKKE LPS + E S +LR+A+L FE R+Q+
Sbjct: 180 LLMRVAAPTDDEMTTVLNYVAKKERFTLPSPANNAILETSQGNLRKALLVFEAMRMQR 237
>gi|410926989|ref|XP_003976950.1| PREDICTED: replication factor C subunit 3-like [Takifugu rubripes]
Length = 356
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 178/242 (73%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G GKK+ IM LLR+++G
Sbjct: 3 LWVDKYRPTSLSKLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGGGKKSRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E++T + A S+ +E+ T++S H+E++ SDAG QDR V+QE+IK +A+++
Sbjct: 63 GVEKLRMEHQT--LVAPSKK-KIEINTIASNYHLEVNASDAGNQDRVVIQELIKTVAQSQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV++L EVD+L+++AQH+LRRTMEKY+A+CRLILC S+SKV IRSRC
Sbjct: 120 QIQSSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYTATCRLILCSTSTSKVIGPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L IR+ P+ E++ VL + KKEGL LP A +++E+S R+LR+A+L E CRVQQ
Sbjct: 180 LAIRVPLPSTEEVCSVLTAVCKKEGLLLPPELAKQISERSGRNLRKALLMCEACRVQQYP 239
Query: 242 FT 243
F+
Sbjct: 240 FS 241
>gi|452821368|gb|EME28399.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 401
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 174/244 (71%), Gaps = 3/244 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LWVDKYRPKTL+ + +H + + L L + PHLLFYGP G GK+T I ALLRQVFG
Sbjct: 29 LLWVDKYRPKTLETLDIHPEWTEKLASLCEQGTLPHLLFYGPSGVGKRTRIYALLRQVFG 88
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
EK +VE++ K+ G ++ELTT++SA+H+EL P+D G+ DR V+QE++KE+A +
Sbjct: 89 IAIEKRQVEHRFLKV--GEPPKEVELTTITSAHHIELCPADVGYNDRLVIQEIVKEIASS 146
Query: 121 RPIDTKG-KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+PI+ RG+KV+VL+++D++S++AQ +LRRTMEKY++ CR+I+ S ++V E IRS
Sbjct: 147 KPIELGNVHRGYKVVVLHDIDEVSKQAQQALRRTMEKYTSCCRIIMSAESVTRVMEPIRS 206
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RCL IRI P +E+I +VL+ IAKKEGL LP +A +L +S +LR+AIL + R
Sbjct: 207 RCLGIRIPCPKKEEIEQVLQKIAKKEGLVLPDCYANQLVTQSKGNLRKAILLLQVGRAIA 266
Query: 240 LRFT 243
F+
Sbjct: 267 YPFS 270
>gi|410947258|ref|XP_003980368.1| PREDICTED: replication factor C subunit 3 [Felis catus]
Length = 351
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/256 (49%), Positives = 173/256 (67%), Gaps = 22/256 (8%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP +L ++ H++ A L+ LV D PHLL YGP G+GKKT IM +LR+++G
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP-----SDAGFQDRYVVQEVIKE 116
G EK+++E++T +TT S + SDAG DR V+QE++K
Sbjct: 63 GVEKLRIEHQT-------------ITTPSKKKIEIXTIIFVLYSDAGNSDRVVIQEMLKT 109
Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+A+++ ++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV
Sbjct: 110 VAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPP 169
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
IRSRCL +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CR
Sbjct: 170 IRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACR 229
Query: 237 VQQLRFT----MPSVD 248
VQQ FT +P D
Sbjct: 230 VQQYPFTADQEIPETD 245
>gi|58263060|ref|XP_568940.1| DNA clamp loader [Cryptococcus neoformans var. neoformans JEC21]
gi|134107896|ref|XP_777330.1| hypothetical protein CNBB1320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260020|gb|EAL22683.1| hypothetical protein CNBB1320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223590|gb|AAW41633.1| DNA clamp loader, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 356
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 166/238 (69%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLD + H ++ LK L D PH+LFYGP G+GKKT IM LR+++GP
Sbjct: 3 LWVDKYRPRTLDDLHYHDGLSSRLKSLAASGDFPHILFYGPSGAGKKTRIMCTLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK++++ + + + +R +D+ + + S H+EL+PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKLRIDQRVF-VTPSNRKLDVNV--VQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+++NE D L+R+AQ +LRRTMEKY + RLILC NS+SK+ IRSRC
Sbjct: 120 QVDLNAKQRFKVVIINEADALTRDAQAALRRTMEKYMTNMRLILCANSTSKIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +PT++++ VL ++AKKE LPS + E S +LR+A+L FE R+Q
Sbjct: 180 LLMRVAAPTDDEMSTVLNYVAKKERFMLPSSANNAILETSQGNLRKALLVFEAMRMQH 237
>gi|390594649|gb|EIN04059.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 356
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 170/244 (69%), Gaps = 3/244 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPK LD + H+ ++ LK L + D PH+LFYGP G+GKKT I A LRQ++GP
Sbjct: 3 LWVDKYRPKALDNLHYHEGLSARLKSLASSGDFPHMLFYGPSGAGKKTRISATLRQLYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GAEK+K++ + + + R L+L + S H+E++PS+ G DR V+QE++KE+A+ +
Sbjct: 63 GAEKLKIDQRVFMTPSRRR---LDLNVVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ I+SRC
Sbjct: 120 QVDLNARQRFKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+EE++++VL +AK EG LP A +A +N +LR+A+L E ++Q
Sbjct: 180 LLVRVGAPSEEEMMRVLAHVAKGEGFDLPPDAAAEIARDANGNLRKALLVLEALKMQSPD 239
Query: 242 FTMP 245
+ P
Sbjct: 240 LSGP 243
>gi|71004802|ref|XP_757067.1| hypothetical protein UM00920.1 [Ustilago maydis 521]
gi|46096871|gb|EAK82104.1| hypothetical protein UM00920.1 [Ustilago maydis 521]
Length = 353
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 166/238 (69%), Gaps = 3/238 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML+VDKYRPK L ++ HQD+++ L L +D PH+L YGP G+GKKT I LLRQ++G
Sbjct: 1 MLFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHMLMYGPSGAGKKTRIACLLRQLYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG K+K++ + + + +R ID+ + +SS H+EL+PSDAG DR V+Q+++KE+A+
Sbjct: 61 PGTYKLKIDQRVF-VTPSNRKIDVNI--VSSNYHIELTPSDAGNYDRLVIQDILKEIAQT 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ +D K FKV+V+NE D LSR+AQ +LRRTMEKY + RL+LC S+SK+ IRSR
Sbjct: 118 QNVDLNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
CL +R+ +PT+E+I VL +AKKE +P T++ + N +LR+A+L E R+Q
Sbjct: 178 CLLLRVGAPTDEEIKTVLNHVAKKERFNIPDAVQTQICDDCNGNLRKAMLVLEALRMQ 235
>gi|226469848|emb|CAX70205.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 357
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 169/238 (71%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKY P +L ++ H+ A+NLKKL+ D PHLL YGP G+GK+T IM +LR+++G
Sbjct: 3 LWVDKYTPTSLGKLDYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G +K+++E+ T+ N + L+T+SS H+E++PSD G DR V+QE+IK MA
Sbjct: 63 GVDKLRMEHHTF---TNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTA 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ ++ FKV+VL+E D L+R+AQH+LRRTMEKY ++CRLIL S+SK+ A RSRC
Sbjct: 120 QLDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L IR+++P+ ++IV++L+ A++EG +P+ A R+A S R+LRRA+L E R Q
Sbjct: 180 LPIRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLYAEVARWQH 237
>gi|226469846|emb|CAX70204.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 302
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 169/238 (71%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKY P +L ++ H+ A+NLKKL+ D PHLL YGP G+GK+T IM +LR+++G
Sbjct: 3 LWVDKYTPTSLGKLDYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G +K+++E+ T+ N + L+T+SS H+E++PSD G DR V+QE+IK MA
Sbjct: 63 GVDKLRMEHHTF---TNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTA 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ ++ FKV+VL+E D L+R+AQH+LRRTMEKY ++CRLIL S+SK+ A RSRC
Sbjct: 120 QLDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L IR+++P+ ++IV++L+ A++EG +P+ A R+A S R+LRRA+L E R Q
Sbjct: 180 LPIRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLFAEVARWQH 237
>gi|393239720|gb|EJD47250.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 357
Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 165/242 (68%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP++LD++ H D++ LK L D PH+LFYGP G+GKKT I+A LR +FGP
Sbjct: 3 LWVDKYRPRSLDELHYHADLSARLKSLAASGDFPHMLFYGPSGAGKKTRILATLRAIFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EKVK++ + + + R +D+ + + S H+EL+PSD G DR V+QE++KE+A +
Sbjct: 63 GVEKVKIDQRVF-VTPSKRKLDVNV--VQSNFHIELTPSDVGNYDRVVIQEILKEIAATQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID K+ FK++V+NE D LSR+AQ +LRRTMEKY ++ RL+LC NS+S + I+SRC
Sbjct: 120 QIDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRLVLCTNSTSNLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P E++ VLE +AKKE LP + ++ +N +LR+A+L E ++Q
Sbjct: 180 LLVRVAAPNAEEMQAVLEHVAKKEKFDLPPTASEQIVADANGNLRKALLVLEALKMQSPD 239
Query: 242 FT 243
T
Sbjct: 240 LT 241
>gi|226469850|emb|CAX70206.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 357
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 169/238 (71%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKY P +L ++ H+ A+NLKKL+ D PHLL YGP G+GK+T IM +LR+++G
Sbjct: 3 LWVDKYTPTSLGKLNYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G +K+++E+ T+ N + L+T+SS H+E++PSD G DR V+QE+IK MA
Sbjct: 63 GVDKLRMEHHTF---TNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTA 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ ++ FKV+VL+E D L+R+AQH+LRRTMEKY ++CRLIL S+SK+ A RSRC
Sbjct: 120 QLDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L IR+++P+ ++IV++L+ A++EG +P+ A R+A S R+LRRA+L E R Q
Sbjct: 180 LPIRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLYAEVARWQH 237
>gi|71747956|ref|XP_823033.1| replication factor C subunit 5 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832701|gb|EAN78205.1| replication factor C, subunit 5, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261332892|emb|CBH15887.1| ATPase, putative [Trypanosoma brucei gambiense DAL972]
Length = 349
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/246 (47%), Positives = 173/246 (70%), Gaps = 6/246 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRP+TLD V ++ ++ + LK+L QD PHLL YGP G+GKKT MA+L+QV+G
Sbjct: 1 MLWVDKYRPRTLDDVDLYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMAVLQQVYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P +++E+K+ ++ S+ +D+ TLSS +H++++PSDAG DR VV ++I+E+A+
Sbjct: 61 PSVYSLRLEHKSVQV-TDSKVVDI--ATLSSPHHIDINPSDAGNHDRVVVMQMIREIAQT 117
Query: 121 RPID--TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
P+ T G +KV+VLNEVDK+ R AQH+LRRTMEKY A+CRL+L CNS+S++ +R
Sbjct: 118 VPLQSGTPGAAKYKVVVLNEVDKMGRAAQHALRRTMEKYMATCRLVLICNSTSRLIAPLR 177
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRV 237
SRCL +R+ S ++E I KV+ + +KEG PS F L+ +S +LRRA L E +
Sbjct: 178 SRCLAVRVPSHSQENITKVIRTVCEKEGRMPPSPAFLAALSNQSEGNLRRAQLMLEAAAM 237
Query: 238 QQLRFT 243
++ F+
Sbjct: 238 TKVDFS 243
>gi|393221474|gb|EJD06959.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 355
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 166/244 (68%), Gaps = 3/244 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLD + HQ ++ L+ L D PH+LFYGP G+GKKT I LRQ+FG
Sbjct: 3 LWVDKYRPRTLDDLHYHQGLSARLRSLAASGDFPHMLFYGPSGAGKKTRIACTLRQLFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + + + R +D+ + + S H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKLKIDQRVF-LTPSKRKLDVNI--VQSNFHIEITPSDVGIYDRVVIQEILKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+++NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+SK+ IRSRC
Sbjct: 120 QVDLNAKQRFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTEE++ L ++AK+E LP A +AE + +LR+A+L E ++Q
Sbjct: 180 LLMRVAAPTEEEVQTCLRYVAKREKFDLPPDAACEIAEDAGGNLRKAVLVLEALKMQSPD 239
Query: 242 FTMP 245
+ P
Sbjct: 240 LSGP 243
>gi|343426782|emb|CBQ70310.1| probable RFC5-DNA replication factor C, 40 KD subunit [Sporisorium
reilianum SRZ2]
Length = 353
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 166/238 (69%), Gaps = 3/238 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML+VDKYRPK L ++ HQD+++ L L +D PH+L YGP G+GKKT I LLR+++G
Sbjct: 1 MLFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHILMYGPSGAGKKTRIACLLRELYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG K+K++ + + + +R ID+ + +SS H+EL+PSDAG DR V+Q+++KE+A+
Sbjct: 61 PGTYKLKIDQRVF-VTPSNRKIDVNI--VSSNYHIELTPSDAGNYDRLVIQDILKEIAQT 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ +D K FKV+V+NE D LSR+AQ +LRRTMEKY + RL+LC S+SK+ IRSR
Sbjct: 118 QNVDLNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
CL +R+ +PT+++I VL +AKKE +P T++ + N +LR+A+L E R+Q
Sbjct: 178 CLLLRVGAPTDDEIKTVLTLVAKKERFSIPDTIQTQICDDCNGNLRKAMLVLEALRMQ 235
>gi|326914292|ref|XP_003203460.1| PREDICTED: replication factor C subunit 3-like [Meleagris
gallopavo]
Length = 344
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 166/220 (75%), Gaps = 7/220 (3%)
Query: 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92
D PHLL YGP G+GKKT IM LLR+++G G EK+++E+++ I A S+ +E++T++S
Sbjct: 22 DFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQS--ITAPSKK-KIEISTIASN 78
Query: 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
H+E++PSDAG DR V+QE++K +A+++ ++T +R FKV++L EVDKL+++AQH+LRR
Sbjct: 79 YHLEVNPSDAGNNDRVVIQELLKTVAQSQQLETSTQRDFKVVLLTEVDKLTKDAQHALRR 138
Query: 153 TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212
TMEKY A+CRLILCCNS SK+ I+SRCL +R+ +P+ E I VL + KKEGL LP
Sbjct: 139 TMEKYMATCRLILCCNSISKIIGPIQSRCLTVRVPAPSIEDICHVLSSVCKKEGLTLPQE 198
Query: 213 FATRLAEKSNRSLRRAILSFETCRVQQLRFT----MPSVD 248
A RLAEKS R+LR+A+L E+CRVQQ F+ +P +D
Sbjct: 199 LAQRLAEKSGRNLRKALLMCESCRVQQYPFSADQDIPEMD 238
>gi|291001551|ref|XP_002683342.1| predicted protein [Naegleria gruberi]
gi|284096971|gb|EFC50598.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 114/249 (45%), Positives = 175/249 (70%), Gaps = 8/249 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW+DK+RP +L+++ +H+++++ L + D PHLL +GP G+GKKT I ALLR+++
Sbjct: 2 VLWLDKHRPMSLEKMQIHKEVSEQLMNITKSGDFPHLLIHGPSGAGKKTRIQALLREIYN 61
Query: 61 PGAEKVKVENKTWKIDA-GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
+KVK+ENK + + GS+ I + T LSS H+E++PSD+G+ D+YVV +IKE+A+
Sbjct: 62 NKIDKVKLENKDVSVGSDGSKTITV--TALSSGYHLEITPSDSGYYDKYVVANMIKEVAE 119
Query: 120 NRPID-----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+D + KV+VL+EVD L+REAQ +LRR MEKYS SCRLILC NS+SK+
Sbjct: 120 TDSVDFLSTGSSASSHLKVIVLHEVDSLTREAQQALRRIMEKYSKSCRLILCANSTSKII 179
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
IRSRC+ +RI +P++E+I VL+F+AKKE ++L ++ EK + ++RRA+L E+
Sbjct: 180 PPIRSRCMAVRIPAPSDEEISTVLQFVAKKENIKLVPEITQQICEKCDGNMRRALLMLES 239
Query: 235 CRVQQLRFT 243
+V+Q FT
Sbjct: 240 AKVEQYPFT 248
>gi|312066686|ref|XP_003136388.1| activator 1 38 kDa subunit [Loa loa]
gi|307768452|gb|EFO27686.1| activator 1 38 kDa subunit [Loa loa]
Length = 354
Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L + H A++L ++V D PHLL YGP G+GK T I +LR+++G
Sbjct: 3 LWVDKYRPRELSALTYHVKQARDLIEIVKTGDFPHLLLYGPSGAGKMTRIFCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK++++ ++++ +G + LE+ T +S HV+LSP + G DR VVQE+IK+MA+
Sbjct: 63 GVEKLRMDARSFQAPSGKK---LEIQTFTSNYHVQLSPGEVGIYDRVVVQEIIKQMAQMH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID +R FKV VL E D+L+R+AQ++LRRTMEKY+ SCRLILCC+S SK+ + ++SRC
Sbjct: 120 QIDVATQRNFKVAVLMEADQLTRDAQNALRRTMEKYAQSCRLILCCDSISKIIDPLKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+++ + K + F+ K+E + +P + +K+N ++RRA+L E +VQ
Sbjct: 180 LAVRVAAPSDDDVAKAVRFVCKQENVSVPDSIVDAVVQKANGNMRRALLMIEAAKVQNYP 239
Query: 242 F 242
F
Sbjct: 240 F 240
>gi|150864072|ref|XP_001382764.2| DNA replicationn factor C [Scheffersomyces stipitis CBS 6054]
gi|149385328|gb|ABN64735.2| DNA replicationn factor C [Scheffersomyces stipitis CBS 6054]
Length = 363
Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 164/251 (65%), Gaps = 16/251 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPKTLDQ+ H I+QNL+ L D PHLL YGP G+GKKT I A L ++FG
Sbjct: 3 LWVDKYRPKTLDQLSFHDSISQNLRALARSGDFPHLLIYGPSGAGKKTRIYATLNEIFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ KT+ S N +E LSSA H+E++PSD G DR V+ +++K++A
Sbjct: 63 QVEKLKIDVKTF---VTSSNRKMEFNVLSSAYHLEITPSDMGNNDRVVISDLLKDVASTE 119
Query: 122 PID------TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D +K K FKV+V+NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S +
Sbjct: 120 QVDFSHQNTSKTKHRFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIP 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRA 228
I+SR L +RI SP+ I +L +AKKEG++ S + LA+ +NR+LR+A
Sbjct: 180 PIKSRTLLVRIPSPSTTAISSILGQVAKKEGIKFSSSNELDIQKYLVTLADTANRNLRKA 239
Query: 229 ILSFETCRVQQ 239
+LSFET +Q
Sbjct: 240 LLSFETVAMQN 250
>gi|241950693|ref|XP_002418069.1| activator 1 40 kda subunit, putative; replication factor c subunit
5, putative; replication factor c5, putative [Candida
dubliniensis CD36]
gi|223641408|emb|CAX43368.1| activator 1 40 kda subunit, putative [Candida dubliniensis CD36]
Length = 362
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 117/248 (47%), Positives = 165/248 (66%), Gaps = 14/248 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLDQ+ H I ++L+ L D PHLL YGP GSGKKT I L ++FGP
Sbjct: 3 LWVDKYRPRTLDQLTYHDSITKSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + S N LE LSS+NH+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVKNF---VTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D ++ K FK++++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S + I
Sbjct: 120 QVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRAIL 230
+SR L +RI SP+ + I +L +A+KE L+ + F +++AE SNR+LRR +L
Sbjct: 180 KSRTLLVRIPSPSVDDINHILSHVAEKESLKFNTNNDSEIDHFYSKVAEASNRNLRRCLL 239
Query: 231 SFETCRVQ 238
SFET +Q
Sbjct: 240 SFETISMQ 247
>gi|397643532|gb|EJK75924.1| hypothetical protein THAOC_02338 [Thalassiosira oceanica]
Length = 376
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 171/257 (66%), Gaps = 23/257 (8%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVF 59
ML+VDK+RP L Q+ H + Q L L + PHLL YGP G+GKKT +MALLR+VF
Sbjct: 1 MLFVDKHRPSRLSQLNYHDTLTQRLTSLAADPGGLPHLLLYGPSGAGKKTRVMALLREVF 60
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G GAE++++E +T+ + +E+ + S H+E++P DAG DRYV+Q+VIKEMA
Sbjct: 61 GCGAERLRLEKRTFTTPTKRQ---VEINMIQSNYHIEMAPGDAGLNDRYVIQDVIKEMAA 117
Query: 120 NRPIDT-----KGKRG--------------FKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160
N+ I + G G +KV+VL EVDKL+R+AQ +LRRTMEKYS+S
Sbjct: 118 NKNIASVVTSKDGNDGEDDGHAKKKAAKASYKVVVLVEVDKLTRQAQAALRRTMEKYSSS 177
Query: 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220
CRLILCCN+ SKV + +RSRCL IR+ +P++++I VL+ +++KE ++L A +A
Sbjct: 178 CRLILCCNNPSKVIDPVRSRCLGIRVAAPSDDEIASVLKTVSRKENIKLADELAINIARL 237
Query: 221 SNRSLRRAILSFETCRV 237
S+R+LRRA+L E+C V
Sbjct: 238 SSRNLRRALLMLESCYV 254
>gi|347828635|emb|CCD44332.1| similar to replication factor C (activator 1) 3 [Botryotinia
fuckeliana]
Length = 354
Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 2/237 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LDQ+ H D++ L+ L D PHLL YGP G+GKKT I+ L++++GP
Sbjct: 3 LIVDKHRPRSLDQLTYHDDLSNRLRSLAQSGDFPHLLLYGPSGAGKKTRIVCTLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++++ + + SR LE +SS H+E++PSD G DR V+ E++KE+A+ +
Sbjct: 63 AVEKIKIDSRVFALATSSRK--LEFNIVSSLYHLEITPSDVGNYDRVVISELLKEVAQTQ 120
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 121 QVDQSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSGNVRLILVANSTSGIIGPIRSRT 180
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PTE IVKVLE K+EG + GF R+A++S R+LRRA+L +E Q
Sbjct: 181 LLVRVGAPTEGDIVKVLETSGKREGWGVSKGFLERVAKESGRNLRRALLMYEAAHAQ 237
>gi|340057395|emb|CCC51740.1| putative ATPase [Trypanosoma vivax Y486]
Length = 349
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 173/251 (68%), Gaps = 6/251 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPK+L V ++ ++ L++L QD PHLLFYGP G+GKKT MA+L V+G
Sbjct: 1 MLWVDKYRPKSLVDVELYPELTSMLRRLAESQDLPHLLFYGPSGTGKKTRCMAVLEHVYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P +++E+K+ ++ + S+ +D+ TLSS +H++++PSDAG DR VV ++I+E A+
Sbjct: 61 PSVYSLRLEHKSVQV-SDSKVVDI--ATLSSPHHIDINPSDAGNYDRVVVMQMIRETAQT 117
Query: 121 RPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
P+ T G +KV+VLNEVDK+ R AQH+LRRTMEKY A+CRLIL CNS+S++ +R
Sbjct: 118 VPLHTTTSNGVKYKVVVLNEVDKMGRAAQHALRRTMEKYVATCRLILICNSTSRLIAPLR 177
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRV 237
SRCL +R+ S ++E I KV++ + +KEG +PS F + ++S+ +LRRA L E
Sbjct: 178 SRCLAVRVPSHSQENITKVIQTVCEKEGRPMPSPAFLATVTQRSDGNLRRAQLILEAAAA 237
Query: 238 QQLRFTMPSVD 248
++ F+ D
Sbjct: 238 TKVEFSGSGAD 248
>gi|449299018|gb|EMC95032.1| hypothetical protein BAUCODRAFT_523426 [Baudoinia compniacensis
UAMH 10762]
Length = 356
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 162/238 (68%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+TLD + H D++ L+ L D PHLL YGP G+GKKT + A LR ++GP
Sbjct: 3 LLVDKHRPRTLDTLTYHTDLSDRLRSLAASGDFPHLLIYGPSGAGKKTRVSATLRALYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GAEK+K++++ ++ + N LE +SS H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GAEKIKIDSRVFQT---TSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +PTEE+I VL + KKEG + R+A+ S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPTEEEIAGVLARVGKKEGYKSCEPLERRIAKDSGRNLRRALLMFEAVHAQN 237
>gi|68472826|ref|XP_719478.1| hypothetical protein CaO19.2029 [Candida albicans SC5314]
gi|46441297|gb|EAL00595.1| hypothetical protein CaO19.2029 [Candida albicans SC5314]
Length = 362
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 164/249 (65%), Gaps = 14/249 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLDQ+ H I +L+ L D PHLL YGP GSGKKT I L ++FGP
Sbjct: 3 LWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + S N LE LSS+NH+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVKNF---VTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D ++ K FK++++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S + I
Sbjct: 120 QVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-------GFATRLAEKSNRSLRRAIL 230
+SR L +RI SP+ + I +L +A+KE L+ + F +++AE SNR+LRR +L
Sbjct: 180 KSRTLLVRIPSPSVDNINHILGHVAEKESLKFSTHNDSEINHFYSKIAETSNRNLRRCLL 239
Query: 231 SFETCRVQQ 239
SFET +Q
Sbjct: 240 SFETISMQN 248
>gi|344303368|gb|EGW33642.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 360
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/248 (48%), Positives = 163/248 (65%), Gaps = 13/248 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPKTLDQ++ H I Q+LK L D PHLL YGP G+GKKT I L ++FG
Sbjct: 3 LWVDKYRPKTLDQLLYHDSITQSLKALSKSGDFPHLLIYGPSGAGKKTRIYCTLNEIFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ KT+ S N LE LSS H+E++PSD G DR V+Q+++K++A
Sbjct: 63 SVEKLKIDVKTF---VTSSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDIASTE 119
Query: 122 PID------TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D +K K FK++++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S +
Sbjct: 120 QVDFNNQSSSKTKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG----FATRLAEKSNRSLRRAILS 231
I+SR L +RI SP+ I +L I+ KEG++ S F T+++ SNR+LRRA+LS
Sbjct: 180 PIKSRTLLVRIPSPSITDINSILSNISVKEGIKFSSNDLEPFYTKVSTASNRNLRRALLS 239
Query: 232 FETCRVQQ 239
FET +Q
Sbjct: 240 FETLTMQN 247
>gi|358058719|dbj|GAA95682.1| hypothetical protein E5Q_02339 [Mixia osmundae IAM 14324]
Length = 387
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 172/247 (69%), Gaps = 4/247 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
L+VDKYRPK L+ + H D+++ ++ L + QD PHLLFYGP G+GKKT IM LR+++G
Sbjct: 29 LFVDKYRPKQLNDLHYHHDLSRRIQALAESGQDFPHLLFYGPSGAGKKTRIMCTLRELYG 88
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
AEK++++ + + + R +D+ + + S H+EL+PSD G DR VVQE++KE+A+
Sbjct: 89 SSAEKLRIDQRVF-VTPSRRKLDVNV--VQSNYHIELTPSDVGMYDRSVVQEILKEIAQT 145
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ +D K+ FKV+V+NE D LSR+AQ +LRRTMEKY+ + RLILC NS+SK+ IRSR
Sbjct: 146 QQVDVNAKKRFKVVVINEADLLSRDAQSALRRTMEKYTTNLRLILCANSTSKIIGPIRSR 205
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
CL +R+ +PT++++V V+ +AKKE ++P A +A+ ++ +LRRA+L+ E Q
Sbjct: 206 CLLLRVGAPTDDEMVNVINHVAKKERFEIPRSAALAVAQSASGNLRRALLALEALHTQDP 265
Query: 241 RFTMPSV 247
F SV
Sbjct: 266 TFQSASV 272
>gi|315050902|ref|XP_003174825.1| replication factor C subunit 5 [Arthroderma gypseum CBS 118893]
gi|311340140|gb|EFQ99342.1| replication factor C subunit 5 [Arthroderma gypseum CBS 118893]
Length = 352
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RPKTLD + HQD++ LK L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLKALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+EL+PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVSSIYHLELTPSDVGNYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL N+++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+EE I +VL+ KKEG G RLA++S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPSEEDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQ 236
>gi|68472569|ref|XP_719603.1| hypothetical protein CaO19.9577 [Candida albicans SC5314]
gi|46441427|gb|EAL00724.1| hypothetical protein CaO19.9577 [Candida albicans SC5314]
gi|238881908|gb|EEQ45546.1| activator 1 40 kDa subunit [Candida albicans WO-1]
Length = 362
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 164/249 (65%), Gaps = 14/249 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLDQ+ H I +L+ L D PHLL YGP GSGKKT I L ++FGP
Sbjct: 3 LWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + S N LE LSS+NH+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVKNF---VTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D ++ K FK++++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S + I
Sbjct: 120 QVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-------GFATRLAEKSNRSLRRAIL 230
+SR L +RI SP+ + I +L +A+KE L+ + F +++AE SNR+LRR +L
Sbjct: 180 KSRTLLVRIPSPSVDDINHILGHVAEKESLKFSTHNDSEINHFYSKVAETSNRNLRRCLL 239
Query: 231 SFETCRVQQ 239
SFET +Q
Sbjct: 240 SFETISMQN 248
>gi|388851451|emb|CCF54853.1| probable RFC5-DNA replication factor C, 40 KD subunit [Ustilago
hordei]
Length = 353
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 165/238 (69%), Gaps = 3/238 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML+VDKYRPK L ++ HQD+++ L L +D PH+L YGP G+GKKT I LLR+++G
Sbjct: 1 MLFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHILMYGPSGAGKKTRIACLLRELYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG K+K++ + + + +R ID+ + +SS H+EL+PSDAG DR V+Q+++KE+A+
Sbjct: 61 PGTYKLKIDQRVF-VTPSNRKIDVNI--VSSNYHIELTPSDAGNYDRLVIQDILKEIAQT 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ +D K FKV+V+NE D LSR+AQ +LRRTMEKY + RL+LC S+SK+ IRSR
Sbjct: 118 QNVDLNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
CL +R+ +P++E+I VL +AKKE +P ++ + + +LR+AIL E R+Q
Sbjct: 178 CLLLRVGAPSDEEIKTVLSHVAKKERFSIPDTVQNQICDDCSGNLRKAILVLEALRMQ 235
>gi|256080226|ref|XP_002576383.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|353231808|emb|CCD79163.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 357
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 167/238 (70%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKY P +L ++ H+ A+NLKKLV + PHLL YGP G+GK+T IM +LR+++G
Sbjct: 3 LWVDKYTPTSLGKLDYHKKQAKNLKKLVDSSNFPHLLVYGPSGAGKRTRIMCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G +++++E+ T+ N + L+T+SS H+E++PSD G DR V+QE+IK MA
Sbjct: 63 GVDRLRMEHHTF---TNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTA 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ ++ FKV+VL+E D L+R+AQH+LRRTMEKY ++CRLIL S+SK+ A RSRC
Sbjct: 120 QLDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L IR+++P+ ++IV++L A++EG +P A R+A S R+LRRA+L E + Q
Sbjct: 180 LPIRVSAPSIDEIVEILRNTARREGHSMPVELAKRIALASERNLRRALLYAEVAKWQH 237
>gi|121715792|ref|XP_001275505.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
clavatus NRRL 1]
gi|119403662|gb|EAW14079.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 164/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H +++ LK L D PHLL YGP G+GKKT ++A L++++GP
Sbjct: 3 LLVDRLRPRSLDALSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTEEQI +VLE KKEG G R+A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEEQICEVLENAGKKEGWPEAPGLNQRIAKESERNLRRALLMFEAIYAQTEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|402224926|gb|EJU04988.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 359
Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 169/238 (71%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLD + H ++++ L+ L + D PH+LFYGP G+GKKT + +LR++FG
Sbjct: 3 LWVDKYRPRTLDDLDYHSELSERLRSLASSGDFPHMLFYGPSGAGKKTRVACVLRELFGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GAEK+K+E + + + R +D+ + S H+EL+PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GAEKLKIEQRVF-LTPSKRKLDVNVVM--SNYHLELTPSDVGIYDRQVIQDILKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D+LSR+AQ +LRRTMEKY A+ R+IL N++SK+ I+SRC
Sbjct: 120 QVDLSAKQRFKVVVINEADQLSRDAQAALRRTMEKYMANLRIILVANNTSKLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +PT E++ VL ++AKKE + LP A+++ ++ +LRRA+L E ++Q
Sbjct: 180 LLVRVAAPTLEEMETVLGYVAKKERVDLPPEVASKIGAEAVGNLRRALLVLEALKMQH 237
>gi|156044344|ref|XP_001588728.1| hypothetical protein SS1G_10275 [Sclerotinia sclerotiorum 1980]
gi|154694664|gb|EDN94402.1| hypothetical protein SS1G_10275 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 354
Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 164/237 (69%), Gaps = 2/237 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LDQ+ H D++ L+ L D PHLL YGP G+GKKT I+ L++++G
Sbjct: 3 LIVDKHRPRSLDQLTYHDDLSDRLRALAQSGDFPHLLLYGPSGAGKKTRIVCTLKELYGG 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++++ +++ + SR LE +SS H+E++PSD G DR V+ E++KE+A+ +
Sbjct: 63 SVEKIKIDSRVFQLSSSSRK--LEFNIVSSLYHLEITPSDVGNYDRVVISELLKEVAQTQ 120
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 121 QVDQSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSGNVRLILVANSTSGIIGPIRSRT 180
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PTE IVKVLE K+EG + GF R+A++S R+LRRA+L +E Q
Sbjct: 181 LLVRVGAPTEGDIVKVLEKSGKREGWGVSRGFLERVAKESGRNLRRALLMYEAAHAQ 237
>gi|326469753|gb|EGD93762.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
112818]
Length = 352
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RPKTLD + HQD++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+EL+PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL N+++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E+ I +VL+ KKEG G RLA++S R+LRRA+L FE Q
Sbjct: 180 LLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQ 236
>gi|392593574|gb|EIW82899.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 360
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 168/244 (68%), Gaps = 3/244 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RPKTLD + H ++ LK L D PH+LFYGP G+GKKT + LRQ+FGP
Sbjct: 3 LWVDKFRPKTLDDLHYHHSLSARLKSLAASGDFPHMLFYGPSGAGKKTRVTCTLRQLFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + + + R LE+ + S H+E++PS+AG DR V+QE++KE+A+ +
Sbjct: 63 GVEKLKIDQRVF-LSPSKRK--LEINIVQSNFHIEITPSEAGNYDRLVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FK +V+NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ I+SRC
Sbjct: 120 QVDLNARQRFKAVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E++ VLE +AKK +P ++++AE+S ++R+A+L FE ++Q
Sbjct: 180 LLMRVAAPTTEEMQVVLEHVAKKLKFDMPPEASSQIAEESGGNMRKALLVFEALKMQSPD 239
Query: 242 FTMP 245
+ P
Sbjct: 240 LSGP 243
>gi|326485099|gb|EGE09109.1| DNA replication factor C subunit Rfc5 [Trichophyton equinum CBS
127.97]
Length = 352
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RPKTLD + HQD++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+EL+PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL N+++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E+ I +VL+ KKEG G RLA++S R+LRRA+L FE Q
Sbjct: 180 LLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQ 236
>gi|302509034|ref|XP_003016477.1| hypothetical protein ARB_04766 [Arthroderma benhamiae CBS 112371]
gi|291180047|gb|EFE35832.1| hypothetical protein ARB_04766 [Arthroderma benhamiae CBS 112371]
Length = 356
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RPKTLD + HQD++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+EL+PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL N+++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E+ I +VL+ KKEG G RLA++S R+LRRA+L FE Q
Sbjct: 180 LLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQ 236
>gi|336260375|ref|XP_003344983.1| hypothetical protein SMAC_06760 [Sordaria macrospora k-hell]
gi|380095056|emb|CCC07558.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 352
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 166/242 (68%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHPELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSNNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSRC
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT ++I VL AKKEG + G R+AE+S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHQEICDVLASSAKKEGWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|327303738|ref|XP_003236561.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326461903|gb|EGD87356.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 352
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RPKTLD + HQD++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+EL+PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVSSIYHLELTPSDVGTYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL N+++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E+ I +VL+ KKEG G RLA++S R+LRRA+L FE Q
Sbjct: 180 LLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQ 236
>gi|324520157|gb|ADY47571.1| Replication factor C subunit 3, partial [Ascaris suum]
Length = 354
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L ++ H + +L ++ D PHLL YGP G+GKKT I +LR+++G
Sbjct: 3 LWVDKYRPHQLSELSYHTEQGNHLASIIKAGDFPHLLIYGPSGAGKKTRIHCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++ V K ++ +G + LE+ T+SS H++LSP D G DR VVQE+IK+MA+ +
Sbjct: 63 GVERMSVSMKNFEAPSGKK---LEIQTVSSNYHIQLSPGDVGIYDRVVVQEIIKQMAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
IDT ++ FKV+VL EV++L+R+AQH+LRRTMEKYSA+CRLILCC S +KV + +RSRC
Sbjct: 120 QIDTATQKQFKVVVLMEVEQLTRDAQHALRRTMEKYSATCRLILCCESIAKVIDPLRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
+ IR+ +P++ V+V++ + K E + +P + +K+ ++RR +L E + Q
Sbjct: 180 MAIRVAAPSDHDAVEVVKVVCKAENVAIPDTAVASVVKKACGNMRRILLMVEAIKAQ 236
>gi|336468523|gb|EGO56686.1| hypothetical protein NEUTE1DRAFT_65455, partial [Neurospora
tetrasperma FGSC 2508]
gi|350289215|gb|EGZ70440.1| putative replication factor C 38K chain, partial [Neurospora
tetrasperma FGSC 2509]
Length = 353
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 166/242 (68%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT ++I VL AKKEG + G R+AE+S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|388582655|gb|EIM22959.1| DNA clamp loader [Wallemia sebi CBS 633.66]
Length = 356
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 162/243 (66%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L+VDKYRPK+LD++ H DI ++ L D PHLLFYGP G+G+KT IM LR++FG
Sbjct: 3 LYVDKYRPKSLDELDYHHDITNRIRSLARSGDFPHLLFYGPSGAGRKTRIMCTLRELFGQ 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK++ ++ N L++ + S H+E++PSD G DR ++Q+++KE+A+ +
Sbjct: 63 GVEKLEQLKIDQRVFLTPSNRKLDVNIVQSNYHIEITPSDVGQYDRIIIQDILKEIAQTQ 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID K FKV+++NE D+LSR+AQ +LRRTMEKY A+ R+ILC ++SK+ IRSRC
Sbjct: 123 QIDANAKHKFKVVIINEADQLSRDAQAALRRTMEKYMANLRIILCAQTTSKIISPIRSRC 182
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +RI +P EQ+ VL +AKKE Q+P A ++ +++ +LR+A+L E R+Q
Sbjct: 183 LLMRIPAPQPEQMTIVLNHVAKKERFQIPDDVAQQIGKEATGNLRKALLVLEAMRMQSPN 242
Query: 242 FTM 244
F M
Sbjct: 243 FDM 245
>gi|85110603|ref|XP_963541.1| activator 1 38 kDa subunit [Neurospora crassa OR74A]
gi|30913260|sp|Q8X082.1|RFC5_NEUCR RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5; AltName: Full=Probable activator 1 subunit 5
gi|18376021|emb|CAB91755.2| probable replication factor C 38K chain [Neurospora crassa]
gi|28925224|gb|EAA34305.1| activator 1 38 kDa subunit [Neurospora crassa OR74A]
Length = 352
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 166/242 (68%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT ++I VL AKKEG + G R+AE+S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|258565365|ref|XP_002583427.1| activator 1 38 kDa subunit [Uncinocarpus reesii 1704]
gi|237907128|gb|EEP81529.1| activator 1 38 kDa subunit [Uncinocarpus reesii 1704]
Length = 352
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 166/246 (67%), Gaps = 3/246 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP+TLD + H D++ LK L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRQRPRTLDALTYHHDLSARLKSLAQRGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASVYHLEITPSDVGTYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE++I +VL+ AKKEG G R+A++S R+LRRA+L E Q +
Sbjct: 180 LLVRVAAPTEDEICQVLKAAAKKEGWTEAPGLNKRIAKESGRNLRRALLMLEAVYAQNEK 239
Query: 242 FTMPSV 247
T +V
Sbjct: 240 VTNDTV 245
>gi|241237969|ref|XP_002401228.1| replication factor C, subunit RFC3, putative [Ixodes scapularis]
gi|215496129|gb|EEC05770.1| replication factor C, subunit RFC3, putative [Ixodes scapularis]
Length = 353
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 163/242 (67%), Gaps = 4/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP +L ++ H++ A LKKLV D PHLL YGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKHRPVSLAKLDYHKEQATYLKKLVQGGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++++E++ + + + +D+ T++S H+E++P A V + + + +
Sbjct: 63 GVERLRIEHQNF-VTPSKKKVDI--VTVASNYHIEVNPRKACSHVTSVSHDCPHIIVRGK 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ T V++L EVDKL+REAQH+LRRTMEKY ASCRLILCCNS SKV AIRSRC
Sbjct: 120 GL-TAACAPLAVVLLAEVDKLTREAQHALRRTMEKYMASCRLILCCNSCSKVIPAIRSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ +Q+ VL + +KEGLQLP A +A +S R+LRRA+L E CRVQQ
Sbjct: 179 LGVRVAAPSLDQVADVLRLVCRKEGLQLPDALAQSVAAQSGRNLRRALLMLEACRVQQYP 238
Query: 242 FT 243
F+
Sbjct: 239 FS 240
>gi|170584076|ref|XP_001896847.1| Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit)
[Brugia malayi]
gi|158595810|gb|EDP34309.1| Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit),
putative [Brugia malayi]
Length = 354
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW+DKYRP+ L + H A +L ++V D PHLL YGP G+GK T I +LR+++G
Sbjct: 3 LWIDKYRPRELSALTYHVKQANDLIEIVKAGDFPHLLIYGPSGAGKMTRIFCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK++++ ++++ +G + LE+ T SS HV+LSP + G DR VVQE++K+MA+
Sbjct: 63 GVEKLRMDARSFQAPSGKK---LEIQTFSSNYHVQLSPGEVGIYDRIVVQEIVKQMAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I T +R FKV+VL E D+L+R+AQ++LRRTMEKY+ +CRLILCC+S SK+ + ++SRC
Sbjct: 120 QIVTATQRNFKVVVLVEADQLTRDAQNALRRTMEKYAQTCRLILCCDSISKIIDPLKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+++ + K + + K+E + +P + +K+N ++RRA+L E +VQ
Sbjct: 180 LAVRVAAPSDDDVAKAVRHVCKQENVSVPESIIAAVLQKANGNMRRALLMIEAAKVQNYP 239
Query: 242 F 242
F
Sbjct: 240 F 240
>gi|310794493|gb|EFQ29954.1| clamp-loader complex subunit E [Glomerella graminicola M1.001]
Length = 352
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 165/242 (68%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RPK+L+ + HQ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPKSLEALTYHQELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT EQI VL AKKE + G R+A+ S+R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHEQICDVLAVSAKKENWPMVKGLHMRIAQDSDRNLRRALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|367055376|ref|XP_003658066.1| hypothetical protein THITE_2124521 [Thielavia terrestris NRRL 8126]
gi|347005332|gb|AEO71730.1| hypothetical protein THITE_2124521 [Thielavia terrestris NRRL 8126]
Length = 352
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 165/242 (68%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RPK+LD + H++++Q L+ L D PHLL YGP G+GKKT I+A L+++FGP
Sbjct: 3 LIVDKHRPKSLDALTYHEELSQRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT ++I VL AKKEG + G R+AE+S R+LR+A+L E Q +
Sbjct: 180 LLVRVAAPTHQEICDVLAASAKKEGWPVVKGLHQRIAEESGRNLRKALLMLEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|213401579|ref|XP_002171562.1| replication factor C subunit 5 [Schizosaccharomyces japonicus
yFS275]
gi|211999609|gb|EEB05269.1| replication factor C subunit 5 [Schizosaccharomyces japonicus
yFS275]
Length = 358
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 166/235 (70%), Gaps = 3/235 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+D+YRPKTL + H + A+ L L + PHLL YGP G+GKKT ++ALLR++FG
Sbjct: 1 MLWLDQYRPKTLANLDYHTEQAERLTHLAASNEFPHLLIYGPSGAGKKTRVVALLRELFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PGAEK+K++ + + + +R I ++ +SS H+EL+PSD G DR V+QE++K++A++
Sbjct: 61 PGAEKLKIDQRVF-LTPSNRKI--QVNIVSSLYHLELTPSDVGNYDRVVMQELLKDVAQS 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+D + K+ FK +V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+SK+ E +RSR
Sbjct: 118 APVDIQAKKRFKAVVINEADSLTRDAQAALRRTMEKYSDNIRLILIANSTSKIIEPVRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
L IR+ +PT +IV VL + +++ L+ ++A+ S+R+LR+A+L ET
Sbjct: 178 TLLIRVAAPTHTEIVSVLTKVLQQQSLEAAPSLLNKIAQDSDRNLRKALLILETL 232
>gi|296812353|ref|XP_002846514.1| activator 1 38 kDa subunit [Arthroderma otae CBS 113480]
gi|238841770|gb|EEQ31432.1| activator 1 38 kDa subunit [Arthroderma otae CBS 113480]
Length = 336
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RPKTLD + H D++ LK L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRLRPKTLDALTYHHDLSARLKALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+EL+PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVSSIYHLELTPSDVGNYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL N+++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E+ I + L+ KKEG G RLA++S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPSEDDICQALKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQ 236
>gi|426199470|gb|EKV49395.1| hypothetical protein AGABI2DRAFT_191437 [Agaricus bisporus var.
bisporus H97]
Length = 355
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 168/244 (68%), Gaps = 4/244 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPK L ++ H +++ LK L + D PH+LFYGP G+GKKT I LR+++GP
Sbjct: 3 LWVDKYRPKNLQELHYHHALSKRLKSLAS-GDFPHILFYGPSGAGKKTRIACTLREIYGP 61
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GAEK+K++ + + + R +++ LT S H+E++PS+AG DR V+QE++KE+A+ +
Sbjct: 62 GAEKLKIDQRIF-LSPSRRKLEINLT--QSNYHIEITPSEAGNYDRVVIQEILKEIAQTQ 118
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FK++V+NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ I+SRC
Sbjct: 119 QVDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P +++ VL IA +E QLP A ++ E SN ++R+A+L E ++Q
Sbjct: 179 LLVRVAAPNADEMAAVLNSIAGRENFQLPEEAARQIIEDSNGNMRKALLVMEALKMQSPN 238
Query: 242 FTMP 245
T P
Sbjct: 239 LTGP 242
>gi|345564932|gb|EGX47888.1| hypothetical protein AOL_s00081g215 [Arthrobotrys oligospora ATCC
24927]
Length = 352
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 165/239 (69%), Gaps = 4/239 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML+VDK+RPKTLD + H D++ LK L D PHLL YGP G+GKKT I+A L++++G
Sbjct: 1 MLFVDKHRPKTLDSLTYHHDLSSRLKAL-ANGDFPHLLVYGPSGAGKKTRIIATLKELYG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG EK+K++++ + + N LE ++S H+E++PSD G DR V+Q+++KE+A+
Sbjct: 60 PGVEKIKIDSRIF---TTTSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQT 116
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ +D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 117 QQVDLAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSR 176
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +PT ++IV VL+ + K E L++ G R+A +S R+LRRA+L FE Q
Sbjct: 177 TLLVRVAAPTTDEIVDVLKGVGKMERLEVKDGLCKRIAVESGRNLRRALLMFEAVYAQN 235
>gi|428183987|gb|EKX52843.1| replication factor C subunit 3 [Guillardia theta CCMP2712]
Length = 362
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 175/243 (72%), Gaps = 9/243 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQ 57
MLWVDKYRP LD++ + + Q LK++ + Q+ HLLFYGPPG+GKKT IMALLR+
Sbjct: 1 MLWVDKYRPVQLDKLTYNDGLTQQLKRISAKENVQNMCHLLFYGPPGAGKKTRIMALLRE 60
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG-FQDRYVVQEVIKE 116
++GPG EK+KVE K +K + S +++T ++S HVE++PSD G ++DR V QEVIKE
Sbjct: 61 IYGPGVEKLKVEIKNFKFKSSS----VDITFITSNYHVEINPSDVGPYRDRDVAQEVIKE 116
Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+A++ FK+++LNEVDK+SR+ Q +LRRTMEKY+++CR +L CN++SKV E
Sbjct: 117 IAQSHAPSNSAAVQFKIVLLNEVDKMSRDGQAALRRTMEKYTSACRFVLVCNNASKVIEP 176
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKE-GLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+RSRC+ +R+ +P ++++ ++L + +KE +LP AT+++ SNR+LR+A+L E+
Sbjct: 177 LRSRCICLRVPAPRDKEVEEILCNVYRKEVKKELPVEAATKISNMSNRNLRKALLMLEST 236
Query: 236 RVQ 238
V+
Sbjct: 237 YVK 239
>gi|409078462|gb|EKM78825.1| hypothetical protein AGABI1DRAFT_114403 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 355
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 168/244 (68%), Gaps = 4/244 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPK L ++ H +++ LK L + D PH+LFYGP G+GKKT I LR+++GP
Sbjct: 3 LWVDKYRPKNLQELHYHHALSKRLKSLAS-GDFPHILFYGPSGAGKKTRIACTLREIYGP 61
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GAEK+K++ + + + R +++ LT S H+E++PS+AG DR V+QE++KE+A+ +
Sbjct: 62 GAEKLKIDQRIF-LSPSRRKLEINLT--QSNYHIEITPSEAGNYDRVVIQEILKEIAQTQ 118
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FK++V+NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ I+SRC
Sbjct: 119 QVDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P +++ VL +A +E QLP A ++ E SN ++R+A+L E ++Q
Sbjct: 179 LLVRVAAPNADEMAAVLNSVAGRENFQLPEEAARQIVEDSNGNMRKALLVMEALKMQSPN 238
Query: 242 FTMP 245
T P
Sbjct: 239 LTGP 242
>gi|116205059|ref|XP_001228340.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176541|gb|EAQ84009.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 352
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 167/242 (69%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H+++++ L+ L D PHLL YGP G+GKKT I+A L+++FGP
Sbjct: 3 LIVDKHRPRSLDALTYHEELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASIYHLEITPSDVGSYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSARQKFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT+++I VL AKKEG + G R+A++S R+LR+A+L FE Q +
Sbjct: 180 LLVRVAAPTQDEISDVLAASAKKEGWPVVKGLHQRIAKESGRNLRKALLMFEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|380484475|emb|CCF39972.1| replication factor C subunit 5 [Colletotrichum higginsianum]
Length = 352
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 163/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RPK+L+ + HQD++ L L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPKSLEALSYHQDLSDRLSSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASNYHLEITPSDVGNYDRVVIQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT EQI VL AKKE + G R+A++S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHEQICDVLAVSAKKENWPMVKGLHMRIAQESGRNLRRALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|378734260|gb|EHY60719.1| replication factor C subunit 5 [Exophiala dermatitidis NIH/UT8656]
Length = 354
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 160/238 (67%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK RP++LD + H+D++ L L D PHLLFYGP G+GKKT I+A LR ++G
Sbjct: 3 LLVDKLRPRSLDALTYHKDLSDRLASLAASADFPHLLFYGPSGAGKKTRILATLRALYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + + S N LE +SS H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVF---TTSSNRKLEFNIVSSVYHLEITPSDVGSYDRVVIQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKYSA+ RLIL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSANVRLILVANSTAGIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +PTE +I VL AKKE ++ R+A++SNR+LR+A+L FE Q
Sbjct: 180 LLVRVAAPTETEICDVLAKAAKKENWKVIPALNERIAKESNRNLRKALLMFEAVYAQN 237
>gi|170096496|ref|XP_001879468.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645836|gb|EDR10083.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 356
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 167/244 (68%), Gaps = 3/244 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD+YRP+TLD + H+ +++ LK L + D PH+LFYGP G+GKKT I LRQ+FG
Sbjct: 3 LWVDEYRPRTLDALHYHRGLSERLKSLASSGDFPHMLFYGPSGAGKKTRITCTLRQLFGN 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + + + R LE+ + S H+E++PS+AG DR V+QE++KE+A+ +
Sbjct: 63 GVEKLKIDQRIF-LSPSKRK--LEINIVQSNFHIEITPSEAGNYDRLVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+++NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+SK+ I+SRC
Sbjct: 120 QVDLNAKQRFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E+++ VLE +A++ G LP ++ + ++R+AIL E ++Q
Sbjct: 180 LLMRVPAPSPEEMLNVLELVARRAGFDLPPEAGMKIVDDCGGNMRKAILVLEALKMQSPD 239
Query: 242 FTMP 245
T P
Sbjct: 240 LTGP 243
>gi|300122545|emb|CBK23114.2| unnamed protein product [Blastocystis hominis]
gi|300122911|emb|CBK23918.2| unnamed protein product [Blastocystis hominis]
Length = 354
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 157/221 (71%), Gaps = 3/221 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML VDK RPKTL+++ H+D++ NL KL + + PH+LFYGP G GKKT IMALLR++FG
Sbjct: 1 MLLVDKQRPKTLEEMDYHKDMSINLMKLASSNEFPHMLFYGPSGCGKKTRIMALLREMFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G EK+++E + +K + +E+ T++S H+EL+PSD G D VVQE+IKE+A+
Sbjct: 61 SGVEKLRMEKREFKTPSQK---SIEIVTIASNYHIELNPSDVGIYDYVVVQEIIKEIAQY 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ +D K FKV++L+E D LSR AQ LRRTMEKYS++CRLILCC +SS++ IRSR
Sbjct: 118 KQLDANAKHPFKVVLLSEADNLSRNAQAGLRRTMEKYSSNCRLILCCENSSRIIAPIRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221
CL +RI++PT +++ +L+ EGL +PS R+A+ S
Sbjct: 178 CLCLRISAPTLSEVLSILQRNCLNEGLSVPSSQLQRIAQAS 218
>gi|302926981|ref|XP_003054403.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735344|gb|EEU48690.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 352
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 165/242 (68%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDSLTYHHELSSRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ G+R LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ-TTGNRK--LEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E+I VL AKKEG + G R+AE+S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHEEICDVLAVSAKKEGWPVVKGLHQRIAEESGRNLRRALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|403417566|emb|CCM04266.1| predicted protein [Fibroporia radiculosa]
Length = 237
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 164/237 (69%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLDQ+ H+ ++ L L D PH+L YGP G+GKKT I A L +FGP
Sbjct: 3 LWVDKYRPRTLDQLHYHKSLSVRLNALAASGDFPHMLLYGPSGAGKKTRIAATLHALFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GA+K+K++ + + + R +D+ + + S H+E++PS+ G DR V+QE++KE+A+ +
Sbjct: 63 GAQKLKIDQRVF-MTPTRRKLDVNI--VQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
ID + FKV+++NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ I+SRC
Sbjct: 120 QIDVSARHPFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ SP+EE++ +VL ++A +E LP A + + +N ++R+A+L E ++Q
Sbjct: 180 LLVRVASPSEEEMSEVLRYVAGREQFDLPDDAAREIVQDANGNMRKALLVLEALKMQ 236
>gi|322695635|gb|EFY87440.1| activator 1 38 kDa subunit [Metarhizium acridum CQMa 102]
Length = 352
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 164/237 (69%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHPELSHRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQT---TSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D+LSR+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADQLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PT E+I VL AKKEG ++ G R+A +S R+LRRA+L +E Q
Sbjct: 180 LLVRVAAPTHEEICSVLAVSAKKEGWEVVKGLHERIAVESGRNLRRALLMYEAVHAQ 236
>gi|46105402|ref|XP_380505.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Gibberella zeae
PH-1]
Length = 354
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHDELSERLRSLAQNGDVPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E+I VL AKKE + G R+AE+S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHEEICNVLAVSAKKENWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNDK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|322705234|gb|EFY96821.1| activator 1 38 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 352
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 163/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHPELSHRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQT---TSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D+LSR+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADQLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PT E+I VL AKKEG + G R+A +S R+LRRA+L +E Q
Sbjct: 180 LLVRVAAPTHEEICSVLAMSAKKEGWGVVKGLHQRIAVESGRNLRRALLMYEAVHAQ 236
>gi|320035707|gb|EFW17648.1| hypothetical protein CPSG_06091 [Coccidioides posadasii str.
Silveira]
gi|392868672|gb|EAS34460.2| replication factor C subunit 5 [Coccidioides immitis RS]
Length = 352
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 165/246 (67%), Gaps = 3/246 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP+TLD + H +++ LK L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E+I +VL+ K+EG G R+A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALLMFEAVYAQNEK 239
Query: 242 FTMPSV 247
T +V
Sbjct: 240 VTDDTV 245
>gi|342879794|gb|EGU81029.1| hypothetical protein FOXB_08438 [Fusarium oxysporum Fo5176]
Length = 389
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 166/246 (67%), Gaps = 3/246 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++L+ + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLETLTYHNELSDRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E+I VL AKKEG + G R+AE+S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHEEICDVLAVSAKKEGWPVVEGLHKRIAEESGRNLRRALLMYEAVHAQNEK 239
Query: 242 FTMPSV 247
T +V
Sbjct: 240 VTDSTV 245
>gi|367035830|ref|XP_003667197.1| hypothetical protein MYCTH_2312770 [Myceliophthora thermophila ATCC
42464]
gi|347014470|gb|AEO61952.1| hypothetical protein MYCTH_2312770 [Myceliophthora thermophila ATCC
42464]
Length = 352
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 164/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++++ L+ L D PHLL YGP G+GKKT I+A L+++FGP
Sbjct: 3 LIVDKHRPRSLDALTYHGELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARAFQT---SSNRKLEFNIVASVYHLEITPSDVGTYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E+I VL AKKEG + G R+AE+S R+LR+A+L E Q +
Sbjct: 180 LLVRVAAPTHEEICDVLAASAKKEGWPVVKGLHQRIAEESGRNLRKALLILEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|402593824|gb|EJW87751.1| hypothetical protein WUBG_01340 [Wuchereria bancrofti]
Length = 354
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 164/241 (68%), Gaps = 3/241 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L + H A++L ++V D PHLL YGP G+GK T I +LR+++G
Sbjct: 3 LWVDKYRPRELSALTYHVKQARDLIEIVKAGDFPHLLIYGPNGAGKMTRIFCVLRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK++++ ++++ +G + LE+ T SS H++LSP + G DR VVQE++K+MA+
Sbjct: 63 GVEKLRMDTRSFQAPSGKK---LEIQTFSSNYHIQLSPGEVGIYDRVVVQEIVKQMAQMH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + +R FKV VL E D+L+R+AQ++LRRTMEKY+ +CRLILCC+S SK+ + ++SRC
Sbjct: 120 QIASATQRNFKVAVLMEADQLTRDAQNALRRTMEKYAQTCRLILCCDSISKIIDPLKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+++ + K + + K+E + +P + +K+N ++RRA+L E VQ
Sbjct: 180 LAVRVAAPSDDDVAKAVRHVCKQENVSVPESIIAAVVQKANGNMRRALLMIEAATVQNYP 239
Query: 242 F 242
F
Sbjct: 240 F 240
>gi|340975786|gb|EGS22901.1| hypothetical protein CTHT_0013780 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 165/242 (68%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LDQ+ H ++++ L+ L D PH+L YGP G+GKKT I+A L+++FGP
Sbjct: 3 LIVDKHRPRSLDQLTYHTELSERLRSLAQSGDFPHILVYGPSGAGKKTRIVATLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSNNRKLEFNIVASVYHLEITPSDVGNYDRVVIQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E+I VL AK+EG + G R+A +S R+LR+A+L ET Q +
Sbjct: 180 LLVRVAAPTHEEICDVLAASAKREGWPVVKGLHQRIAVESGRNLRKALLMLETVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|392576874|gb|EIW70004.1| hypothetical protein TREMEDRAFT_30209 [Tremella mesenterica DSM
1558]
Length = 341
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 162/238 (68%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+TLD + H +++ L+ L D PH+LFYGP G+GKKT IM LR+++GP
Sbjct: 3 LWVDKYRPRTLDDLHYHTELSSRLRSLSASGDFPHILFYGPSGAGKKTRIMCTLRELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK++++ + + +G + L++ + S H+EL+PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKLRIDQRVFVTPSGRK---LDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+++NE D L+R+AQ +LRRTMEKY + RLILC S+SK+ IRSRC
Sbjct: 120 QVDLNAKQRFKVVIVNEADALTRDAQAALRRTMEKYMTNMRLILCATSTSKIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +P ++ KVL+ +AKKE LP + S +LR+A+L FE R+Q+
Sbjct: 180 LLVRVAAPDNGEMTKVLQHVAKKERFHLPDPACQSITSASGGNLRKALLVFEAMRMQR 237
>gi|326429355|gb|EGD74925.1| replication factor C subunit 3 [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 163/237 (68%), Gaps = 4/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW+DKYRPK L + H I Q LK L + D PHLLFYGPPG+GKKT + LR+++G
Sbjct: 3 LWIDKYRPKQLSALSYHDGITQQLKTLASSGDVPHLLFYGPPGAGKKTRVQCFLRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+K+K+E++++K S+ +D+ +T++S H+E++PSD G D +VV+ ++KE+A +
Sbjct: 63 STDKLKIEHRSFKATP-SKTVDI--STIASGYHIEINPSDVGIDDYHVVRLLLKEIASSP 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+DT FKV+V++E D+L+R+AQ +LRR MEKY +CR +L NSSSK+ IRSRC
Sbjct: 120 QLDT-SHHAFKVVVISEADRLTRKAQQALRRIMEKYVHNCRYVLIGNSSSKILAPIRSRC 178
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+ +++ VL + KKEG Q+ GFA ++A S+R+LRRA+L E Q
Sbjct: 179 LGLRVGAPSVDELSTVLIDVGKKEGCQVMPGFAAKVANASSRNLRRALLMLEATASQ 235
>gi|408392830|gb|EKJ72144.1| hypothetical protein FPSE_07682 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHDELSERLRSLAQNGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E+I VL AKKE + G R+AE+S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHEEICNVLAVSAKKENWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|398399060|ref|XP_003852987.1| replication factor C subunit 5 [Zymoseptoria tritici IPO323]
gi|339472869|gb|EGP87963.1| hypothetical protein MYCGRDRAFT_85700 [Zymoseptoria tritici IPO323]
Length = 357
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+TLD + H +++ L+ L D PHLL YGP G+GKKT I A LR ++GP
Sbjct: 3 LLVDKHRPRTLDSLSYHPELSDRLRALAASGDFPHLLIYGPSGAGKKTRISATLRALYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ + N LE +SS H+E++PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQ---TTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVIQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+++NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSRC
Sbjct: 120 QVDAAAKQRFKVVLINEADHLTRDAQAALRRTMEKYSPNLRLILVANSTSNIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+++P+EE+I KVL + K E Q R+A S R+LRRA+L FE Q
Sbjct: 180 LLVRVSAPSEEEICKVLAKVGKDERYQACETLEKRIARDSKRNLRRALLMFEAVHAQ 236
>gi|195578467|ref|XP_002079087.1| GD22189 [Drosophila simulans]
gi|194191096|gb|EDX04672.1| GD22189 [Drosophila simulans]
Length = 227
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 157/216 (72%), Gaps = 3/216 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ L ++ H+D A+NL+ L + D PHL+FYGP G+GKKT IM LLR+++G
Sbjct: 3 LWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++ E T+ + N +E+ T+SS H+E++PSDAG DR VV ++IK++A+
Sbjct: 63 GVERLRSETMTFTTPS---NRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ G+R FKV+V++E D+L+++AQH+LRRTMEKY A+CR+I+ NS+S++ AIRSRC
Sbjct: 120 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217
L IR+ +P E +IV +L+ K+EGL LP + L
Sbjct: 180 LGIRVAAPNETEIVSILQNTCKREGLALPWSWPNGL 215
>gi|327349013|gb|EGE77870.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis ATCC 18188]
Length = 352
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 160/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP+ LD + H D++ LK L D PHLL YGP G+GKKT I+A LR++FGP
Sbjct: 3 LLVDRLRPRNLDALTYHHDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLRELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDLSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE +I + L+ KKEG G R+A++S R+LRRA+L E Q +
Sbjct: 180 LLVRVAAPTEAEICQALQVAEKKEGWAEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|119190365|ref|XP_001245789.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 357
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 162/238 (68%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP+TLD + H +++ LK L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +PT E+I +VL+ K+EG G R+A++S R+LRRA+L FE Q+
Sbjct: 180 LLVRVAAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALLMFEAVYAQK 237
>gi|255723854|ref|XP_002546856.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
gi|240134747|gb|EER34301.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
Length = 362
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 160/249 (64%), Gaps = 14/249 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPKTLDQ+ H I Q+L+ L D PHLL YGP GSGKKT I L ++FG
Sbjct: 3 LWVDKYRPKTLDQLSYHDSITQSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + S N LE LSSANH+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVKNF---VTSSNRKLEFNVLSSANHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D ++ K FK++++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S + I
Sbjct: 120 QVDFANQSRTKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRAIL 230
+SR L +RI SP+ + I +L +A+ E ++ + F +A SNR+LRR +L
Sbjct: 180 KSRTLLVRIPSPSVDDISNILNNVAESEAIKFKATNELAMKKFYNDIATTSNRNLRRCLL 239
Query: 231 SFETCRVQQ 239
SFE+ +Q
Sbjct: 240 SFESISMQN 248
>gi|342184431|emb|CCC93913.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 395
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 169/246 (68%), Gaps = 6/246 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPKTLD V ++ ++ + LK+L QD PHLL YGP G+GKKT MA+L +V+G
Sbjct: 47 MLWVDKYRPKTLDDVELYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMAVLEKVYG 106
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P +++E+K+ ++ S+ +D+ TLSS +H++++PSDAG DR VV ++I+E+A+
Sbjct: 107 PTVYSLRLEHKSVQV-TDSKVVDI--ATLSSPHHIDINPSDAGNHDRVVVMQMIREIAQT 163
Query: 121 RPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
P+ +G +KV+VLNEVDK+ R AQH+LRRTMEKY ++CRLIL C+S+S++ +R
Sbjct: 164 VPLQPVAPKGAKYKVVVLNEVDKMGRAAQHALRRTMEKYMSTCRLILICSSTSRLIAPLR 223
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRV 237
SRCL IR+ S + E + KV++ + ++EG PS F L +S +LRRA L E +
Sbjct: 224 SRCLAIRVPSHSRENLEKVVKAVCEREGRAPPSQAFLASLTRQSEGNLRRAQLMLEAAAM 283
Query: 238 QQLRFT 243
+ F
Sbjct: 284 NKADFA 289
>gi|430814355|emb|CCJ28396.1| unnamed protein product [Pneumocystis jirovecii]
Length = 351
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 163/234 (69%), Gaps = 3/234 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L++DKYRPK+LD + H+++++ LK L D PHLL YG PGSGKKT ++A LR+++G
Sbjct: 3 LFIDKYRPKSLDHMHFHEELSRKLKALAKSSDFPHLLVYGIPGSGKKTRVLATLRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ KT+ S N +++ +SS H+E +PSD+G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKLKIDQKTF---ISSSNKKIKINIISSNYHLEFTPSDSGNYDRMVIQDLLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+DT K+ FKV+++NE D LS EAQ +LRRTMEKY + RLIL +S+SK+ I+SRC
Sbjct: 120 QVDTSAKQRFKVVIINESDHLSGEAQAALRRTMEKYYPNLRLILLASSTSKIMAPIQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+R+++P E+I +L+++A +E LP ++A S R+LRRA+L ET
Sbjct: 180 FLVRVSAPKLEEIATILKYVASEEHFSLPDQLCNKIALDSKRNLRRALLMLETI 233
>gi|336383955|gb|EGO25103.1| hypothetical protein SERLADRAFT_368530 [Serpula lacrymans var.
lacrymans S7.9]
Length = 356
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 163/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RPKTLD + H+ ++ LK L D PH+LFYGP G+GKKT I LRQ+FG
Sbjct: 3 LWVDKFRPKTLDDLHYHEGLSARLKSLAASGDFPHMLFYGPSGAGKKTRISCTLRQLFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++K++ + + + R LE+ + S H+E++PS+AG DR V+QE++KE+A+ +
Sbjct: 63 GVERLKIDQRVF-LSPSKRK--LEINIVQSNYHIEITPSEAGNYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ I+SRC
Sbjct: 120 QVDLNAKQRFKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PT E++ VL +AKK LP + ++ + S +LR+A+L FE ++Q
Sbjct: 180 LLMRVAAPTPEEMQTVLHHVAKKLKFDLPDDASKQIVDDSGGNLRKALLVFEALKMQ 236
>gi|336371191|gb|EGN99530.1| hypothetical protein SERLA73DRAFT_179588 [Serpula lacrymans var.
lacrymans S7.3]
Length = 368
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 163/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RPKTLD + H+ ++ LK L D PH+LFYGP G+GKKT I LRQ+FG
Sbjct: 3 LWVDKFRPKTLDDLHYHEGLSARLKSLAASGDFPHMLFYGPSGAGKKTRISCTLRQLFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E++K++ + + + R LE+ + S H+E++PS+AG DR V+QE++KE+A+ +
Sbjct: 63 GVERLKIDQRVF-LSPSKRK--LEINIVQSNYHIEITPSEAGNYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ I+SRC
Sbjct: 120 QVDLNAKQRFKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PT E++ VL +AKK LP + ++ + S +LR+A+L FE ++Q
Sbjct: 180 LLMRVAAPTPEEMQTVLHHVAKKLKFDLPDDASKQIVDDSGGNLRKALLVFEALKMQ 236
>gi|302675274|ref|XP_003027321.1| hypothetical protein SCHCODRAFT_61292 [Schizophyllum commune H4-8]
gi|300101007|gb|EFI92418.1| hypothetical protein SCHCODRAFT_61292 [Schizophyllum commune H4-8]
Length = 356
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 169/244 (69%), Gaps = 3/244 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD+YRP++L ++ HQ +++ L+ L + D PH+LFYGP G+GKKT I +L+++FGP
Sbjct: 3 LWVDQYRPRSLSELHYHQGLSKRLQSLASSGDFPHILFYGPSGAGKKTRISCVLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GAEK+K++ + + + R LE+ + S H+E++PS+AG DR V+QE++KE+A+ +
Sbjct: 63 GAEKLKIDQRIF-LSPSKRK--LEINLVQSNFHIEITPSEAGNYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ I+SRC
Sbjct: 120 QVDLNAKQRFKVVVINEADGLSRDAQAALRRTMEKYMSNLRIILCANSTSRLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P +++ VL+++A++ G LP ++ S +LR+AIL E ++Q
Sbjct: 180 LLMRVAAPNAGEMMSVLDYVARRVGFDLPPEAGQQIVADSGGNLRKAILVLEALKMQSPD 239
Query: 242 FTMP 245
T P
Sbjct: 240 LTGP 243
>gi|167533047|ref|XP_001748204.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773324|gb|EDQ86965.1| predicted protein [Monosiga brevicollis MX1]
Length = 355
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 169/244 (69%), Gaps = 4/244 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WVDK+RPK+LDQ+ H +++Q+LK L D PH+LF+GP G+GKKT MA LR+++GP
Sbjct: 4 MWVDKHRPKSLDQLDFHANLSQHLKMLSASGDVPHMLFHGPSGAGKKTRCMAFLRELYGP 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A+++K++++ K S+ + E++TLSS H+E++PSD G D +VV+ ++KE+A+
Sbjct: 64 SADRLKIDHQVIK-PTPSKTV--EISTLSSNFHIEINPSDVGIDDYHVVRMILKEIARTP 120
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+DT K FK +V+ E D+L+R++Q +LRR ME Y ++CR IL CNSS+K+ IRSRC
Sbjct: 121 LVDT-SKHPFKTVVIVEADRLTRKSQQALRRIMESYVSNCRYILICNSSTKILAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT ++ VL +AKKE + +P ++ ++S R+LRRA+L E R Q
Sbjct: 180 LQMRVGAPTMSEMCAVLHGVAKKEAVTVPDELCQQIVKESRRNLRRALLMLEASRAQIQA 239
Query: 242 FTMP 245
++P
Sbjct: 240 TSLP 243
>gi|358336212|dbj|GAA33502.2| replication factor C subunit 3/5, partial [Clonorchis sinensis]
Length = 367
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 161/238 (67%), Gaps = 3/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKY P +L ++ HQ A LK LV + PHLL YGP GSGK+T IM LLR+++G
Sbjct: 13 LWVDKYAPTSLQKLDYHQQEATALKNLVDSGNFPHLLVYGPSGSGKRTRIMCLLRELYGS 72
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G ++++ E + + N + ++T+SS H+E++PS+ G DR VVQE+IK MA
Sbjct: 73 GVDRLRTETHNFLTPS---NKKVTVSTVSSNFHLEVNPSEVGIYDRVVVQELIKTMASTA 129
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ +R FKV+VL+E D L+++AQH+LRRTMEKY ++CRLIL S SK+ A RSRC
Sbjct: 130 QLDSAQQRDFKVVVLHEADHLTKDAQHALRRTMEKYISTCRLILSAESISKIISATRSRC 189
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L IR+ +P+ +QIV +L+ A++EG +P+ A R+A S R+LRRA+L E + Q
Sbjct: 190 LPIRVAAPSIDQIVHILKNTARREGQSMPTELAERIANASERNLRRALLLAEVAKWQH 247
>gi|19112438|ref|NP_595646.1| DNA replication factor C complex subunit Rfc5 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913232|sp|O94697.1|RFC5_SCHPO RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5
gi|4455787|emb|CAB36876.1| DNA replication factor C complex subunit Rfc5 (predicted)
[Schizosaccharomyces pombe]
Length = 358
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 168/238 (70%), Gaps = 3/238 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+D+YRPKTL + H+ +++ L L + + PHLL YGP G+GKKT ++A+LR+++G
Sbjct: 1 MLWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG+EK+K++ +T+ + + L++ +SS +H+E++PSD G DR ++QE++K++A++
Sbjct: 61 PGSEKLKIDQRTFLTPSSKK---LQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+D + K+ FKV+V+N D+L+R+AQ +LRRTMEKYS + RLIL NS+SK+ E IRSR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PT E+I+ V+ I +GL+ P +A +R+LR+AIL ET +
Sbjct: 178 TLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAK 235
>gi|119481309|ref|XP_001260683.1| DNA replication factor C subunit Rfc5, putative [Neosartorya
fischeri NRRL 181]
gi|119408837|gb|EAW18786.1| DNA replication factor C subunit Rfc5, putative [Neosartorya
fischeri NRRL 181]
Length = 355
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 163/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H +++ LK L D PHLL YGP G+GKKT ++A L++++G
Sbjct: 3 LLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTEEQI VL+ K+EG G R+A++S+R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|429857955|gb|ELA32792.1| DNA replication factor c subunit [Colletotrichum gloeosporioides
Nara gc5]
Length = 352
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + HQ+++ L L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHQELSDRLGSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E+I +VL AKKE + G R+A++S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPSHEEICEVLAVSAKKENWPMVKGLHMRIAQESGRNLRRALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|154346764|ref|XP_001569319.1| putative replication factor C, subunit 5 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066661|emb|CAM44460.1| putative replication factor C, subunit 5 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 351
Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 175/258 (67%), Gaps = 13/258 (5%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVD+YRPKTL V ++ ++ + L +L QD PHLLFYGP GSGKKT MA+L +++G
Sbjct: 1 MLWVDRYRPKTLKDVELYPELREVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P V++E+K+ ++ + S+ +D+ TLSS +H++++PSDAG+ DR +V ++I+E+A+
Sbjct: 61 PSVYSVRLEHKSVQV-SDSKVVDI--ATLSSPHHIDINPSDAGYYDRSIVMQMIREIAQT 117
Query: 121 RPIDTKGKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
P+ T G +KV+VLNEVDK+SR AQH+LRRTMEKY ++CRL L CNS+S++
Sbjct: 118 VPLHTTVNSGKSVPYKVVVLNEVDKMSRSAQHALRRTMEKYMSTCRLFLLCNSTSRLISP 177
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETC 235
+RSRCL IR+ ++E + ++ + + EG LPS F LA +S+ +LRR +L E
Sbjct: 178 LRSRCLGIRVALHSKENLKLAVQRVCEGEGRPLPSEAFLHALALRSDGNLRRGLLMLEAS 237
Query: 236 RVQQLRF-----TMPSVD 248
+ ++ + T+P D
Sbjct: 238 AMTRVDWSGNGATIPQAD 255
>gi|71001752|ref|XP_755557.1| DNA replication factor C subunit Rfc5 [Aspergillus fumigatus Af293]
gi|66853195|gb|EAL93519.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
fumigatus Af293]
Length = 294
Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 163/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H +++ LK L D PHLL YGP G+GKKT ++A L++++G
Sbjct: 3 LLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVSSVYHLEITPSDVGNYDRVVIQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTEEQI VL+ K+EG G R+A++S+R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|115383958|ref|XP_001208526.1| activator 1 38 kDa subunit [Aspergillus terreus NIH2624]
gi|114196218|gb|EAU37918.1| activator 1 38 kDa subunit [Aspergillus terreus NIH2624]
Length = 352
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 163/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK RP++LD + H ++++ L+ L D PHLL YGP G+GKKT +A L++++GP
Sbjct: 3 LLVDKLRPRSLDALSYHHELSERLRSLAQSGDFPHLLMYGPSGAGKKTRTVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE++I VL ++EG + G R+A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEDEICTVLSTAGQREGWTVAPGLNKRIAQESGRNLRRALLMFEAIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|154281829|ref|XP_001541727.1| activator 1 38 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150411906|gb|EDN07294.1| activator 1 38 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 352
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 161/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H D++ LK L D PHLL YGP G+GKKT I+A L+++FGP
Sbjct: 3 LLVDRLRPRSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARIFQ---TTSNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P E +I +VL+ KKEG G R+A++S R+LRRA+L E Q +
Sbjct: 180 LLVRVAAPAEAEICQVLKLAVKKEGWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|395332196|gb|EJF64575.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 360
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 165/237 (69%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP++LDQ+ H ++ LK L D PH+LFYGP G+GKKT I L ++FG
Sbjct: 3 LWVDKHRPRSLDQLHYHHALSARLKALAASGDFPHMLFYGPTGAGKKTRIAGTLLELFGK 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + + + R +D+ + + S H+E++PS+ G DR V+QE++KE+A+ +
Sbjct: 63 GVEKLKIDQRVF-LTPTKRKLDVNI--VQSNFHIEITPSEVGNYDRVVIQEILKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FK++V++E D L+R+AQ +LRRTMEKY + RLILC NS+SK+ IRSRC
Sbjct: 120 QVDLSAKQKFKLVVIHEADSLTRDAQAALRRTMEKYMTNMRLILCANSTSKLIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+EE++ VL+++ K+EG +P A +A+ +N ++R+A+L E ++Q
Sbjct: 180 LLMRVAAPSEEEMRAVLDYVGKREGFAIPDDTARLIAQDANGNVRKALLVLEALKMQ 236
>gi|358365640|dbj|GAA82262.1| DNA replication factor C subunit Rfc5 [Aspergillus kawachii IFO
4308]
Length = 352
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 161/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK RP++LD + H +++ LK L D PHLL YGP G+GKKT +A L++++G
Sbjct: 3 LLVDKLRPRSLDALTYHPELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P EE+I VL AKKEG SG R+A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPNEEEICTVLRNAAKKEGWPEASGLNKRIAKESGRNLRRALLMFEAIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|400600329|gb|EJP68003.1| putative activator 1 subunit 5 [Beauveria bassiana ARSEF 2860]
Length = 352
Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 162/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHDELTDRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ S N LE ++S H E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQT---SSNRKLEFNIVASVYHQEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ E+I VL + AKKE + G R+A +S R+LR+A+L +E Q +
Sbjct: 180 LLVRVAAPSHEEICDVLAYAAKKENWSVVKGLHQRIAVESGRNLRKALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|159129619|gb|EDP54733.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
fumigatus A1163]
Length = 355
Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 163/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H +++ LK L D PHLL YGP G+GKKT ++A L++++G
Sbjct: 3 LLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVIQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTEEQI VL+ K+EG G R+A++S+R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|190348623|gb|EDK41109.2| hypothetical protein PGUG_05207 [Meyerozyma guilliermondii ATCC
6260]
Length = 362
Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 114/249 (45%), Positives = 160/249 (64%), Gaps = 15/249 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP++LDQ+ H I NL+ L + D PHLL YGP GSGKKT I + L +++GP
Sbjct: 3 LWVDKYRPRSLDQLSFHDSITNNLRALASTGDFPHLLVYGPSGSGKKTRIYSTLHELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + + N LE LSS +H+E++PSD G DR V+Q+++K++A
Sbjct: 63 SVEKLKIDVKKF---TTTSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+D K FKV+V+NE D LSR+AQ +LRRTMEKYS++ RLI+ CN++S +
Sbjct: 120 QVDFTAKASSPRHKFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLIMVCNTTSSIISP 179
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRAI 229
I+SR L +RI +PT +I VL IA KE ++ G F +LA NR++RRA+
Sbjct: 180 IKSRTLLVRIPAPTTAEIASVLTTIADKETVKFNPGDEETRQKFFEQLATNCNRNMRRAL 239
Query: 230 LSFETCRVQ 238
L FET +Q
Sbjct: 240 LCFETISMQ 248
>gi|67540260|ref|XP_663904.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Aspergillus nidulans
FGSC A4]
gi|40739494|gb|EAA58684.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Aspergillus nidulans
FGSC A4]
gi|259479486|tpe|CBF69752.1| TPA: DNA replication factor C subunit Rfc5, putative
(AFU_orthologue; AFUA_2G12250) [Aspergillus nidulans
FGSC A4]
Length = 352
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H +++ L+ L D PHLL YGP G+GKKT +A L++++GP
Sbjct: 3 LLVDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++N+ ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDNRVFQ---TTSNRKLEFNIVSSVYHLEITPSDVGTYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+EE I +L AK+EG R+A++S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPSEEDICTILSTSAKREGWNEAPELNKRIAKESGRNLRRALLMFEAIYAQ 236
>gi|149248680|ref|XP_001528727.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146448681|gb|EDK43069.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 362
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 164/249 (65%), Gaps = 14/249 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPKTL Q+ H+DI QNL+ L D PHLL YGP G+GKKT I A L +FG
Sbjct: 3 LWVDKYRPKTLAQLSYHKDITQNLQALSKSGDFPHLLVYGPSGAGKKTRIYATLHAIFGV 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ KT+ + N LE LSS +H+E++PSD G DR V+Q+++K++A
Sbjct: 63 SVEKLKIDVKTFTTPS---NRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D + + FKV+++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S + I
Sbjct: 120 QVDFGNQSSKRHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-------GFATRLAEKSNRSLRRAIL 230
+SR L +RI SP+ +I +L +A++E ++ S GF ++A SNR+LRRA+L
Sbjct: 180 KSRTLLVRIPSPSVAEISLILHDVAQEEKVKFSSTDQQALTGFYEQVATVSNRNLRRALL 239
Query: 231 SFETCRVQQ 239
+FET +Q
Sbjct: 240 AFETICMQN 248
>gi|145232232|ref|XP_001399568.1| replication factor C subunit 5 [Aspergillus niger CBS 513.88]
gi|134056481|emb|CAK37570.1| unnamed protein product [Aspergillus niger]
gi|350634494|gb|EHA22856.1| hypothetical protein ASPNIDRAFT_46970 [Aspergillus niger ATCC 1015]
Length = 352
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 162/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK RP++LD + H +++ LK L D PHLL YGP G+GKKT +A L++++G
Sbjct: 3 LLVDKLRPRSLDALTYHPELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+EE I VL+ AKKEG SG R+A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPSEEDICTVLKNAAKKEGWPEASGLNKRIAKESGRNLRRALLMFEAIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|389638296|ref|XP_003716781.1| replication factor C subunit 5 [Magnaporthe oryzae 70-15]
gi|351642600|gb|EHA50462.1| replication factor C subunit 5 [Magnaporthe oryzae 70-15]
Length = 352
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 165/237 (69%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H+++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQGARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E++I VL AKKEG + + R+A++S R+LRRA+L ET Q
Sbjct: 180 LLVRVAAPSEDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQ 236
>gi|440638755|gb|ELR08674.1| replication factor C subunit 5 [Geomyces destructans 20631-21]
Length = 352
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 163/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H D+++ L+ L D PHLL YGP G+GKKT I+A L+++FGP
Sbjct: 3 LLVDKHRPRSLDTLSYHDDLSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQ---TSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL +S++ + IRSR
Sbjct: 120 QVDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLADSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE +I VL KEG L R+A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEAEICDVLAKTGAKEGWPLAEELNLRVAQESGRNLRRALLMFEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|392564235|gb|EIW57413.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 358
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP++LD + H ++ LK L D PH+LFYGP G+GKKT I L ++FG
Sbjct: 3 LWVDKWRPRSLDDLHYHHGLSDRLKALAASGDFPHMLFYGPSGAGKKTRIAGTLLELFGK 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GAEK+K++ + + + L++ + S H+E +PS+ G DR ++Q+++KE+A+ +
Sbjct: 63 GAEKIKIDQRVFTTPTKRK---LDVNIVQSNYHIEFTPSEVGNYDRLIIQDILKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V++E D L+R+AQ +LRRTMEKY ++ RLILC NS+SK+ IRSRC
Sbjct: 120 QVDLNAKQKFKVVVIHEADALTRDAQAALRRTMEKYMSNMRLILCANSTSKLIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+ E++ VL+F+AK EG +P + +A + +LR+AIL E ++Q
Sbjct: 180 LLMRVAAPSTEEMQTVLDFVAKHEGFAIPEDTVSLIAADAGGNLRKAILVLEALKMQ 236
>gi|346326608|gb|EGX96204.1| replication factor C subunit 5 [Cordyceps militaris CM01]
Length = 352
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 162/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++ + L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHDELTERLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ S N LE ++S H E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQT---SSNRKLEFNIVASVYHQEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ EQI VL AKKE + G R+A +S R+LR+A+L +E Q +
Sbjct: 180 LLVRVPAPSHEQICDVLASAAKKENWSVIKGLHQRIAVESGRNLRKALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|407404710|gb|EKF30062.1| replication factor C, subunit 5, putative [Trypanosoma cruzi
marinkellei]
Length = 349
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 173/251 (68%), Gaps = 6/251 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPK+LD+V ++ ++ + LK+L QD PHLL YGP G+GKKT M++LR V+G
Sbjct: 1 MLWVDKYRPKSLDEVELYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMSVLRHVYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P +++E+++ ++ S+ +D+ TLSS +H++++PSDAG DR +V ++I+E+A+
Sbjct: 61 PSVYSLRLEHRSVQV-TDSKVVDI--ATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQT 117
Query: 121 RPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
+ + G +KV++LNEVDK+ R AQH+LRRTMEKY ++CRL+L CNS+S++ +R
Sbjct: 118 VSLQSSTSNGVKYKVVLLNEVDKMGRAAQHALRRTMEKYMSTCRLVLICNSTSRLIAPLR 177
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRV 237
SRCL +R+ S ++E + KV+ + + E LPS F + ++S +LRRA+L E +
Sbjct: 178 SRCLAVRVPSHSKENLTKVIRRVCELENRPLPSPAFMATVTQRSEGNLRRALLMVEAAAM 237
Query: 238 QQLRFTMPSVD 248
++ F+ D
Sbjct: 238 TKVDFSGNGAD 248
>gi|294656983|ref|XP_002770358.1| DEHA2D18722p [Debaryomyces hansenii CBS767]
gi|199431875|emb|CAR65712.1| DEHA2D18722p [Debaryomyces hansenii CBS767]
Length = 364
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 167/260 (64%), Gaps = 16/260 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPK+L+Q+ H+ I QNL L + D PHLL YGPPGSGKKT I L ++FGP
Sbjct: 3 LWVDKYRPKSLEQLSYHESITQNLAALASTGDFPHLLVYGPPGSGKKTRIYCTLHELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + S N LE LSS H+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVKVF---TTSSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PID------TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + K FKV+++NE D LSR+AQ +LRRTMEKYSA+ R+I+ CN++S +
Sbjct: 120 QVDFSNQSKSASKHRFKVVIINEADSLSRDAQAALRRTMEKYSANIRIIMICNTTSNIIS 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSG------FATRLAEKSNRSLRRA 228
I+SR L +RI +P+ ++I +L IA KE ++ PS F ++++ S+ +LR+A
Sbjct: 180 PIKSRTLLVRIPAPSHKEISNILSNIADKESVKFNPSNESKKQEFFDKVSKNSDSNLRKA 239
Query: 229 ILSFETCRVQQLRFTMPSVD 248
+L FET +Q + + D
Sbjct: 240 LLCFETISMQSESIAINNTD 259
>gi|50549265|ref|XP_502103.1| YALI0C21692p [Yarrowia lipolytica]
gi|49647970|emb|CAG82423.1| YALI0C21692p [Yarrowia lipolytica CLIB122]
Length = 348
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 161/234 (68%), Gaps = 4/234 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RPK+LD V HQDI++ L D PHLL YGP G+GKKT +M LL++++GP
Sbjct: 3 LWVDKHRPKSLDHVDYHQDISERFSALAATGDLPHLLVYGPSGAGKKTRVMGLLKKLYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+ K+ K S+ +LEL + SA H+E++PSD G DR V+Q+++KE A+ +
Sbjct: 63 SVEKI--STKSHKFVTPSKR-ELELGVICSAYHLEVTPSDMGNNDRLVIQQLLKETAETQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+++NE D LSR+AQ +LRRTMEKY+ + RLIL NS+S + IRSR
Sbjct: 120 QVDLNAKQRFKVVIINEADSLSRDAQAALRRTMEKYTKNIRLILLTNSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFET 234
L +R+ +PTE+ IV VLE +A KE + L + ++A S+R+LR+A+L+ ET
Sbjct: 180 LLVRVAAPTEQDIVNVLEKVAAKEHVDLENTKTLEKIASHSDRNLRKALLTLET 233
>gi|402076632|gb|EJT72055.1| replication factor C subunit 5 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 352
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H+ ++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHEALSDRLRSLARSGDFPHLLIYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNKKLEFNIVASVYHLEITPSDVGNYDRVVIQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PTEE++ VL AK+EG + R+A++S R+LRRA+L ET Q
Sbjct: 180 LLVRVAAPTEEEVCTVLASSAKREGWAVSEKLHQRIAKESGRNLRRAMLMLETVHAQ 236
>gi|358399724|gb|EHK49061.1| hypothetical protein TRIATDRAFT_133438 [Trichoderma atroviride IMI
206040]
Length = 352
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 164/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++L+ + HQ+++ L+ L D PHLL YGP G+GKKT I+A L+++FGP
Sbjct: 3 LIVDKHRPRSLEALSYHQELSDRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT E+I VL AKKE ++ G R+A +S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHEEICDVLAQSAKKENWEVVKGLHERIAVESGRNLRRALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|452989910|gb|EME89665.1| hypothetical protein MYCFIDRAFT_57005 [Pseudocercospora fijiensis
CIRAD86]
Length = 357
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+TLD + H ++++ L+ L D PHLL YGP G+GKKT I A LR ++GP
Sbjct: 3 LLVDKHRPRTLDTLSYHPELSERLRALANSGDFPHLLIYGPSGAGKKTRITATLRALYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ + N LE +SS H+E++PSD DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQ---TTTNRKLEFNIVSSNYHLEITPSDVANYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PTEE+I +VL + K E R+A++S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPTEEEICEVLAKVGKDERYTACQPLERRIAKESKRNLRRALLMFEAVHAQ 236
>gi|325093236|gb|EGC46546.1| activator 1 subunit 5 [Ajellomyces capsulatus H88]
Length = 352
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 161/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H D++ LK L D PHLL YGP G+GKKT I+A L+++FGP
Sbjct: 3 LLVDRLRPRSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARIFQ---TTTNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+E +I +VL+ KKE G R+A++S R+LRRA+L E Q +
Sbjct: 180 LLVRVAAPSEAEICQVLKLAVKKESWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|440465127|gb|ELQ34467.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
gi|440488575|gb|ELQ68292.1| replication factor C subunit 3 [Magnaporthe oryzae P131]
Length = 425
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 165/237 (69%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H+++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+Q+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQGARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E++I VL AKKEG + + R+A++S R+LRRA+L ET Q
Sbjct: 180 LLVRVAAPSEDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQ 236
>gi|146412432|ref|XP_001482187.1| hypothetical protein PGUG_05207 [Meyerozyma guilliermondii ATCC
6260]
Length = 362
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/249 (45%), Positives = 160/249 (64%), Gaps = 15/249 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP++LDQ+ H I NL+ L + D PHLL YGP GSGKKT I + L +++GP
Sbjct: 3 LWVDKYRPRSLDQLSFHDSITNNLRALASTGDFPHLLVYGPSGSGKKTRIYSTLHELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + + N LE LSS +H+E++PSD G DR V+Q+++K++A
Sbjct: 63 LVEKLKIDVKKF---TTTSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+D K FKV+V+NE D LSR+AQ +LRRTMEKYS++ RLI+ CN++S +
Sbjct: 120 QVDFTAKASSPRHKFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLIMVCNTTSSIISP 179
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRAI 229
I+SR L +RI +PT +I VL IA KE ++ G F +LA NR++RRA+
Sbjct: 180 IKSRTLLVRIPAPTTAEIALVLTTIADKETVKFNPGDEETRQKFFEQLATNCNRNMRRAL 239
Query: 230 LSFETCRVQ 238
L FET +Q
Sbjct: 240 LCFETILMQ 248
>gi|354546913|emb|CCE43645.1| hypothetical protein CPAR2_212890 [Candida parapsilosis]
Length = 362
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 159/249 (63%), Gaps = 14/249 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPKTL Q+ H I QNL+ L D PHLL YGP G+GKKT I L ++FG
Sbjct: 3 LWVDKYRPKTLSQLSYHDSITQNLRALSKSGDFPHLLVYGPSGAGKKTRIYCTLHEIFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + + N LE LSS H+E++PSD G DR V+Q+++K++A
Sbjct: 63 SVEKLKIDVKNF---VTTSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D + K FKV+++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S + I
Sbjct: 120 QVDFGNQSSKKHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRAIL 230
+SR L +RI SP+ E I +L +A+KE ++ S F ++A SNR+LRR++L
Sbjct: 180 KSRTLLVRIPSPSIEDISSILGHVAEKEHVKFSSTNGQDVDQFYNQVATTSNRNLRRSLL 239
Query: 231 SFETCRVQQ 239
+FET +Q
Sbjct: 240 AFETIYMQN 248
>gi|225684714|gb|EEH22998.1| replication factor C subunit 5 [Paracoccidioides brasiliensis Pb03]
Length = 352
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 162/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H++++ LK L D PHLL YGP G+GKKT I+A L+++FG
Sbjct: 3 LLVDRLRPRSLDALTYHRELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGT 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSTNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + R+IL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE +I +VL+ KKE G R+A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEAEICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|358386824|gb|EHK24419.1| hypothetical protein TRIVIDRAFT_178042 [Trichoderma virens Gv29-8]
Length = 352
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 164/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++L+ + H ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLEALSYHHELSERLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT +I VL AKKE ++ G R+AE+S R+LRRA+L +E Q +
Sbjct: 180 LLVRVAAPTHAEICDVLAQSAKKENWEVVKGLHQRIAEESGRNLRRALLMYEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|448079909|ref|XP_004194496.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
gi|359375918|emb|CCE86500.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
Length = 363
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 160/250 (64%), Gaps = 16/250 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPK LDQ+ H + +NLK L + D PHLL YGPPGSGKKT I L +++GP
Sbjct: 3 LWVDKYRPKKLDQLSYHNGLTENLKALASTGDFPHLLVYGPPGSGKKTRIYGTLYELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ T+ + N LE LSSA+H+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVNTF---TTTSNRKLEFNVLSSAHHLEITPSDMGNNDRVVIQDLLKDVASVE 119
Query: 122 PID------TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D +K K FKV+++NE D LS++AQ +LRRTMEKYSA+ RLIL N++S +
Sbjct: 120 QVDFSNSAKSKSKHRFKVVIINEADSLSKDAQAALRRTMEKYSANIRLILVSNTTSGIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRA 228
I+SR L +R+ +P+E I +L IAKKEGL+ +A S ++LRR
Sbjct: 180 PIKSRTLLVRVPAPSETDIADILSGIAKKEGLKFKPDTDNAKQELFRNIALHSEKNLRRT 239
Query: 229 ILSFETCRVQ 238
+L FET +Q
Sbjct: 240 LLCFETLSMQ 249
>gi|169774819|ref|XP_001821877.1| replication factor C subunit 5 [Aspergillus oryzae RIB40]
gi|238496571|ref|XP_002379521.1| DNA replication factor C subunit Rfc5, putative [Aspergillus flavus
NRRL3357]
gi|83769740|dbj|BAE59875.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694401|gb|EED50745.1| DNA replication factor C subunit Rfc5, putative [Aspergillus flavus
NRRL3357]
gi|391868800|gb|EIT78009.1| replication factor C, subunit RFC3 [Aspergillus oryzae 3.042]
Length = 352
Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 160/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK RP++L+ + H +++ LK L D PHLL YGP G+GKKT +A L++++G
Sbjct: 3 LLVDKLRPRSLEALSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVYQT---TSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE+QI VL K+EG G ++A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEDQICSVLSAAGKREGWPEAPGLNKKIAKESGRNLRRALLMFEAIYAQSEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|401421084|ref|XP_003875031.1| putative replication factor C, subunit 5 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491267|emb|CBZ26533.1| putative replication factor C, subunit 5 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 351
Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 170/248 (68%), Gaps = 8/248 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVD+YRPKTL V ++ ++ + L +L QD PHLLFYGP GSGKKT MA+L +++G
Sbjct: 1 MLWVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P V++E+K+ ++ + S+ +D+ TLSS +H++++PSDAG DR +V ++I+E+A+
Sbjct: 61 PSVYSVRLEHKSVQV-SDSKVVDI--ATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQT 117
Query: 121 RPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
P+ T +KV+VLNEVDK+SR AQH+LRRTMEKY +CRL L CNS+S++
Sbjct: 118 VPLHTTANNRKNVPYKVVVLNEVDKMSRSAQHALRRTMEKYMNTCRLFLLCNSTSRLIPP 177
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETC 235
+RSRCL IR+ S +++ + ++ + + EG LPS F LA +S+ +LRR +L E
Sbjct: 178 LRSRCLGIRVASHSKDNLKLAVQRVCEGEGRPLPSAAFLNSLALRSDGNLRRGLLMLEAS 237
Query: 236 RVQQLRFT 243
+ ++ ++
Sbjct: 238 AMAKVDWS 245
>gi|296412902|ref|XP_002836158.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629965|emb|CAZ80349.1| unnamed protein product [Tuber melanosporum]
Length = 351
Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 161/238 (67%), Gaps = 3/238 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML VDK+RP+ L+ + HQ ++ LK L D PHLL YGP G+GKKT I+A L++++G
Sbjct: 1 MLLVDKHRPRKLEALHYHQGLSSRLKALANSGDFPHLLVYGPSGAGKKTRIVATLKELYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG EK+K++++ + + N +E ++S H+E++PSD G DR ++Q ++KE+ +
Sbjct: 61 PGVEKIKIDSRVF---MTTTNRKIEFNIVASVYHIEITPSDVGNHDRVIIQSLLKEIGQT 117
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ +D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + I+SR
Sbjct: 118 QQVDIAAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILIANSTANIIAPIKSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L IR+ +PT +++V VL+ +A+ E + A R+AE+S R+LRRA+L FE Q
Sbjct: 178 TLLIRVAAPTIDEMVGVLKHVAELERFEFSDKLARRVAEESGRNLRRALLMFEALYAQ 235
>gi|407928875|gb|EKG21718.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 354
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDKHRPRSLDALTYHHELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQT---SSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL S+S + IRSR
Sbjct: 120 QVDLAARQRFKVVVVNEADHLTRDAQAALRRTMEKYSPNLRLILLAESTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PTEE IV+ L+ +KEG + G R+A R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPTEEDIVEALKVAGRKEGWKENEGLNRRIARDCGRNLRRALLMFEAVHAQ 236
>gi|157877944|ref|XP_001687264.1| putative replication factor C, subunit 5 [Leishmania major strain
Friedlin]
gi|68130339|emb|CAJ09651.1| putative replication factor C, subunit 5 [Leishmania major strain
Friedlin]
Length = 351
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 172/248 (69%), Gaps = 8/248 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVD+YRPKTL V ++ ++ + L +L QD PHLLFYGP GSGKKT MA+L +++G
Sbjct: 1 MLWVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P V++E+K+ ++ + S+ +D+ TLSS +H++++PSDAG DR +V ++I+E+A+
Sbjct: 61 PSVFSVRLEHKSVQV-SDSKVVDI--ATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQT 117
Query: 121 RPI-DTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
P+ T G R +KV+VLNEVDK+SR AQH+LRRTMEKY +CRL L CNS+S++
Sbjct: 118 VPLHSTSGNRKNVPYKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPP 177
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETC 235
+RSRCL IR+ S +++ + ++ + + EG LPS F LA +S+ +LRR +L E
Sbjct: 178 LRSRCLGIRVASHSKDNLKLAVQRVCEGEGRPLPSVAFLNSLALRSDGNLRRGLLMLEAS 237
Query: 236 RVQQLRFT 243
+ ++ ++
Sbjct: 238 ALAKVDWS 245
>gi|255946333|ref|XP_002563934.1| Pc20g14580 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588669|emb|CAP86787.1| Pc20g14580 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 159/242 (65%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK RP+TLD + H +++ L+ L D PHLL YGP G+GKKT ++A L++++GP
Sbjct: 3 LLVDKLRPRTLDALSYHPELSDRLRSLAHSGDFPHLLVYGPSGAGKKTRVIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++P+D G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVSSVYHLEITPADVGTYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE I L KKEG R+A++S R+LRRA+L FE+ Q +
Sbjct: 180 LLVRVAAPTESDICSALHLAGKKEGWTESEVLNKRIAKESGRNLRRALLMFESIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|396464153|ref|XP_003836687.1| similar to DNA replication factor C subunit Rfc5 [Leptosphaeria
maculans JN3]
gi|312213240|emb|CBX93322.1| similar to DNA replication factor C subunit Rfc5 [Leptosphaeria
maculans JN3]
Length = 355
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 164/242 (67%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+ LD + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDKHRPRNLDALSYHPGLSERLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+++PTE +I +VL + KKEG + R+A++S R+LR+A+L FE Q +
Sbjct: 180 LLVRVSAPTETEICEVLSKVGKKEGWKEVESLNRRIAKESGRNLRKALLMFEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 IT 241
>gi|453088544|gb|EMF16584.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 358
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+TL+ + H ++++ L+ L D PHLL YGP G+GKKT I A LR ++GP
Sbjct: 3 LLVDKHRPRTLETLSYHPELSERLRALANSGDFPHLLIYGPSGAGKKTRITATLRALYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ + N LE +SS H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQ---TTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D+L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSRC
Sbjct: 120 QVDLAAKQRFKVVVINEADQLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+++PTE +I +VL + K E ++A++S R+LRRA+L FE Q
Sbjct: 180 LLVRVSAPTEAEICEVLAKVGKDERYTSCEPLEKKIAKESKRNLRRALLMFEAIHAQ 236
>gi|449540333|gb|EMD31326.1| hypothetical protein CERSUDRAFT_119887 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 162/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP+TLD++ H+ ++ L+ L D PH+LFYGP G+GKKT I LR++FG
Sbjct: 3 LWVDKHRPRTLDELHYHEGLSARLRALAASGDFPHMLFYGPSGAGKKTRIACTLRELFGK 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + + + + L++ + S H+E++PS+ G DR V+QE++KE+A+ +
Sbjct: 63 GVEKLKIDQRVFMTPSKRK---LDVNVVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+++NE D L+R+AQ +LRRTMEKY ++ R+ILC NS+S++ IRSRC
Sbjct: 120 QVDLNAKQRFKVVIINEADSLTRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ ++ VL +A KE LP A + SN ++R+A+L FE ++Q
Sbjct: 180 LLMRVAAPSPAEMETVLHHVAAKERFHLPDEAAQAIVADSNGNMRKAVLVFEALKMQSTD 239
Query: 242 FT 243
T
Sbjct: 240 LT 241
>gi|448084401|ref|XP_004195594.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
gi|359377016|emb|CCE85399.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
Length = 363
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 160/250 (64%), Gaps = 16/250 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPK LDQ+ H + +NLK L + D PHLL YGPPGSGKKT I L +++GP
Sbjct: 3 LWVDKYRPKKLDQLSYHNGLTENLKALASTGDFPHLLVYGPPGSGKKTRIYGTLYELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ T+ + N LE LSSA+H+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVNTF---TTTSNRKLEFNVLSSAHHLEITPSDMGNNDRVVIQDLLKDVASVE 119
Query: 122 PID------TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D +K K FKV+++NE D LS++AQ +LRRTMEKYSA+ RLIL N++S +
Sbjct: 120 QVDFSNSTKSKSKHRFKVVIINEADSLSKDAQAALRRTMEKYSANIRLILVSNTTSGIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRA 228
I+SR L +R+ +P+E I +L I+KKEGL+ +A + R+LRR
Sbjct: 180 PIKSRTLLVRVPAPSETDIADILSGISKKEGLKFKPDTDNAKQELFRNIALHAERNLRRT 239
Query: 229 ILSFETCRVQ 238
+L FET +Q
Sbjct: 240 LLCFETLSMQ 249
>gi|406859749|gb|EKD12812.1| clamp-loader complex subunit E [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 369
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 169/259 (65%), Gaps = 20/259 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLV-------------TEQ----DCPHLLFYGPPG 44
L VDK+RP++LDQ+ H +++ L+ LV T Q D PHLL YGP G
Sbjct: 3 LLVDKHRPRSLDQLTYHPELSDRLRSLVRPSSHSSRFFLLTTSQAQSGDFPHLLVYGPSG 62
Query: 45 SGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF 104
+GKKT I+A L++++GPG EK+K++ + ++ + N LE +SS H+E++PSD G
Sbjct: 63 AGKKTRIVATLKELYGPGVEKIKIDCRVFQT---TSNRKLEFNIVSSVYHLEITPSDVGN 119
Query: 105 QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLI 164
DR VVQ+++KE+A+ + +DT K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLI
Sbjct: 120 YDRVVVQDLLKEVAQTQQVDTSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLI 179
Query: 165 LCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224
L NS++ + IRSR L +R+ +P+E +I VLE A+KEG + +G R+A +S R+
Sbjct: 180 LLANSTANIIAPIRSRTLLVRVAAPSEREICGVLEKSARKEGWSVSAGLNERIARESGRN 239
Query: 225 LRRAILSFETCRVQQLRFT 243
LRRA+L E Q + T
Sbjct: 240 LRRALLMLEAVHAQNEKIT 258
>gi|295674217|ref|XP_002797654.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280304|gb|EEH35870.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 363
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 160/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP+ LD + H+ ++ LK L D PHLL YGP G+GKKT I+A L+++FG
Sbjct: 3 LLVDRLRPRNLDALTYHRGLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE +SS H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---STNRKLEFNIVSSVYHLEITPSDVGNYDRVVIQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + R+IL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIISPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE +I +VL+ KKE G R+A++S R+LRRA+L FE Q +
Sbjct: 180 LLVRVAAPTEAEICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|303315063|ref|XP_003067539.1| Activator 1 38 kDa subunit, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107209|gb|EER25394.1| Activator 1 38 kDa subunit, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 344
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 158/229 (68%), Gaps = 3/229 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP+TLD + H +++ LK L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR V+QE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
L +R+ +PT E+I +VL+ K+EG G R+A++S R+LRRA+L
Sbjct: 180 LLVRVAAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALL 228
>gi|343113487|gb|AEL87702.1| replication factor C 3 [Strongylocentrotus nudus]
Length = 334
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 166/251 (66%), Gaps = 28/251 (11%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
WVDK+RP +L ++ H++ A NLKKLV D PHL+ YGP G+GKKT IM L++++G
Sbjct: 3 FWVDKHRPTSLSKLDYHKEQASNLKKLVQSGDFPHLMVYGPSGAGKKTRIMCALKELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E +T+ + S+ +E+TT++S H+E++PSDAG DR V+Q++I+ A+ +
Sbjct: 63 GVEKLRIEQQTFTTPSKSK---IEITTIASNYHIEVNPSDAGIYDRIVIQDLIRNTAQFQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++T ++ A H E ++A+CRLILCCNS+SKV AIRSRC
Sbjct: 120 QMETS----------------AQSAGHG-----EVHTATCRLILCCNSTSKVIPAIRSRC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +P+ +I ++L+ + KKEGL LPS A R+AEKS R+LR+AILS E C+VQQ
Sbjct: 159 LGVRVAAPSIAEITQILQNVCKKEGLNLPSELAKRIAEKSERNLRKAILSCEACKVQQYP 218
Query: 242 FT----MPSVD 248
F+ +P D
Sbjct: 219 FSADQDIPEAD 229
>gi|452847021|gb|EME48953.1| hypothetical protein DOTSEDRAFT_142483 [Dothistroma septosporum
NZE10]
Length = 356
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 161/237 (67%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+T++ + H ++++ L+ L D PHLL YGP G+GKKT I A LRQ++G
Sbjct: 3 LLVDKHRPRTIETLTYHPELSERLRALANSGDFPHLLVYGPSGAGKKTRITATLRQLYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++++ ++ + N LE +SS H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDSRVFQ---TTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSRC
Sbjct: 120 QVDLAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+EE+I +VL + K E Q ++A+ S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPSEEEICEVLAKVGKDERYQSCEPLEKKVAKDSKRNLRRALLMFEAVHAQ 236
>gi|71666770|ref|XP_820341.1| replication factor C, subunit 5 [Trypanosoma cruzi strain CL
Brener]
gi|70885681|gb|EAN98490.1| replication factor C, subunit 5, putative [Trypanosoma cruzi]
gi|407849659|gb|EKG04335.1| replication factor C, subunit 5, putative [Trypanosoma cruzi]
Length = 349
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 172/251 (68%), Gaps = 6/251 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDKYRPK+L +V ++ ++ + LK+L QD PHLL YGP G+GKKT MA+L V+G
Sbjct: 1 MLWVDKYRPKSLVEVELYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMAVLHHVYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P +++E+++ ++ S+ +D+ TLSS +H++++PSDAG DR +V ++I+E+A+
Sbjct: 61 PSVYSLRLEHRSVQV-TDSKVVDI--ATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQT 117
Query: 121 RPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
+ + G +KV++LNEVDK+ R AQH+LRRTMEKY ++CRL+L CNS+S++ +R
Sbjct: 118 VSLQSSTSNGVKYKVVLLNEVDKMGRAAQHALRRTMEKYMSTCRLVLICNSTSRLIAPLR 177
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFETCRV 237
SRCL +R+ S ++E + KV+ + ++E LPS F + ++S +LRRA+L E +
Sbjct: 178 SRCLAVRVPSHSKENLTKVIRGVCERENRPLPSPEFMATVTQRSEGNLRRALLMVEAAAM 237
Query: 238 QQLRFTMPSVD 248
++ F+ D
Sbjct: 238 TKVDFSGNGAD 248
>gi|425765328|gb|EKV04028.1| DNA replication factor C subunit Rfc5, putative [Penicillium
digitatum Pd1]
gi|425766809|gb|EKV05406.1| DNA replication factor C subunit Rfc5, putative [Penicillium
digitatum PHI26]
Length = 352
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 158/242 (65%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK RP+ LD + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDKLRPRNLDALSYHPELSDRLRSLARSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE +SS H+E++P+D G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVSSVYHLEITPADVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLGAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE I L KKEG R+A++S R+LRRA+L FE+ Q +
Sbjct: 180 LLVRVAAPTENDICSALHLAGKKEGWTESEVLNKRIAKESGRNLRRALLMFESIYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|225563283|gb|EEH11562.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 608
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 160/240 (66%), Gaps = 3/240 (1%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
+++ RP++LD + H D++ LK L D PHLL YGP G+GKKT I+A L+++FGPG
Sbjct: 261 IEQLRPRSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGPGV 320
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
EK+K++ + ++ + N LE +SS H+E++PSD G DR VVQE++KE+A+ + +
Sbjct: 321 EKIKIDARIFQT---TSNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELLKEVAQTQQV 377
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR L
Sbjct: 378 DLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLL 437
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFT 243
+R+ +P E +I +VL+ KKEG G R+A++S R+LRRA+L E Q + T
Sbjct: 438 VRVAAPAEAEICQVLKLAVKKEGWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEKVT 497
>gi|339899439|ref|XP_003392854.1| putative replication factor C, subunit 5 [Leishmania infantum
JPCM5]
gi|398025304|ref|XP_003865813.1| replication factor C, subunit 5, putative [Leishmania donovani]
gi|321398829|emb|CBZ09063.1| putative replication factor C, subunit 5 [Leishmania infantum
JPCM5]
gi|322504050|emb|CBZ39137.1| replication factor C, subunit 5, putative [Leishmania donovani]
Length = 351
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 168/248 (67%), Gaps = 8/248 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVD+YRPKTL V ++ ++ L +L QD PHLLFYGP GSGKKT MA+L +++G
Sbjct: 1 MLWVDRYRPKTLKDVELYPELKGVLTRLSKAQDVPHLLFYGPSGSGKKTRAMAMLHEIYG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P V++E+K+ ++ + S+ +D+ TLSS +H++++PSDAG DR +V ++I+E+A+
Sbjct: 61 PSVYSVRLEHKSVQV-SDSKVVDI--ATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQT 117
Query: 121 RPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
P+ T +KV+VLNEVDK+SR AQH+LRRTMEKY +CRL L CNS+S++
Sbjct: 118 VPLHTTASNRKNVPYKVVVLNEVDKMSRSAQHALRRTMEKYMNTCRLFLLCNSTSRLIPP 177
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETC 235
+RSRCL IR+ S +++ + ++ + + EG LPS F LA +S +LRR +L E
Sbjct: 178 LRSRCLGIRVASHSKDNLKLAVQRVCEGEGRPLPSAAFLNSLALRSGGNLRRGLLMLEAS 237
Query: 236 RVQQLRFT 243
+ ++ ++
Sbjct: 238 AMAKVDWS 245
>gi|330906014|ref|XP_003295321.1| hypothetical protein PTT_00410 [Pyrenophora teres f. teres 0-1]
gi|311333479|gb|EFQ96578.1| hypothetical protein PTT_00410 [Pyrenophora teres f. teres 0-1]
Length = 356
Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 161/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+ L+ + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE +I VL + KKEG + R+A+ S R+LR+A+L FE Q +
Sbjct: 180 LLVRVAAPTESEICSVLSKVGKKEGWKDVESLNQRIAKDSGRNLRKALLMFEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 IT 241
>gi|189198796|ref|XP_001935735.1| replication factor C subunit 5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982834|gb|EDU48322.1| replication factor C subunit 5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 348
Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 163/245 (66%), Gaps = 3/245 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+ L+ + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE +I VL + KKEG + R+A+ S R+LR+A+L FE Q+
Sbjct: 180 LLVRVAAPTESEICSVLSKVGKKEGWKDVESLNQRIAKDSGRNLRKALLMFEAVHAQKYV 239
Query: 242 FTMPS 246
+P+
Sbjct: 240 PFLPT 244
>gi|452003770|gb|EMD96227.1| hypothetical protein COCHEDRAFT_1152298 [Cochliobolus
heterostrophus C5]
Length = 355
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 161/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+ L+ + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE +I VL + KKEG + R+A+ S R+LR+A+L FE Q +
Sbjct: 180 LLVRVAAPTEAEICDVLSKVGKKEGWKDVESLHQRIAKDSGRNLRKALLMFEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 IT 241
>gi|340522517|gb|EGR52750.1| replication factor C, subunit 5-like protein [Trichoderma reesei
QM6a]
Length = 352
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 162/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++L+ + H ++++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLEALSYHHELSERLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TSSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT +I L AK+E ++ G R+AE+S R+LRRA+L E Q +
Sbjct: 180 LLVRVAAPTHAEICDALAQSAKRENWEVVQGLHQRIAEESGRNLRRALLMLEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|239610553|gb|EEQ87540.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis ER-3]
Length = 354
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 163/264 (61%), Gaps = 25/264 (9%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ----------------------DCPHLLF 39
L VD+ RP+ LD + H D++ LK LV+ Q D PHLL
Sbjct: 3 LLVDRLRPRNLDALTYHHDLSARLKSLVSIQNKSYIPQSIPTNDRARWQAQSGDFPHLLV 62
Query: 40 YGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99
YGP G+GKKT I+A LR++FGPG EK+K++ + ++ S N LE +SS H+E++P
Sbjct: 63 YGPSGAGKKTRIIATLRELFGPGVEKIKIDARVFQT---SSNRKLEFNIVSSIYHLEITP 119
Query: 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159
SD G DR VVQE++KE+A+ + +D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS
Sbjct: 120 SDVGNYDRVVVQELLKEVAQTQQVDLSARQRFKVVVINEADHLTRDAQAALRRTMEKYSP 179
Query: 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219
+ RLIL NS++ + IRSR L +R+ +PTE +I + L+ KKEG G R+A+
Sbjct: 180 NLRLILLANSTANIIAPIRSRTLLVRVAAPTEAEICQALQVAEKKEGWAEAPGLNKRIAK 239
Query: 220 KSNRSLRRAILSFETCRVQQLRFT 243
+S R+LRRA+L E Q + T
Sbjct: 240 ESGRNLRRALLMLEAIYAQNEKVT 263
>gi|389750127|gb|EIM91298.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 161/238 (67%), Gaps = 4/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD YRPK+LD + H+ ++ LK L D PH+LFYGP G+GKKT I LRQ+FG
Sbjct: 3 LWVDCYRPKSLDDLHYHEGLSTRLKSLAASGDFPHMLFYGPSGAGKKTRIACTLRQLFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + + + R +D+ + + S H+EL+PS+ G DR V+QE++KE+A+ +
Sbjct: 63 GVEKLKIDQRVF-LTPSKRKLDVNI--VQSNYHIELTPSEVGNYDRVVIQEILKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D LSR+AQ +LRRTMEKY ++ R+ILC NS+S++ IRSRC
Sbjct: 120 QVDLTARQRFKVVVINEADTLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P E++ VL +A + G+ ++P A + SN ++R+AIL E ++Q
Sbjct: 180 LLMRVAAPNHEEMRTVLNHVATRAGIPKIPQEAADEIVRDSNGNMRKAILVLEALKMQ 237
>gi|226286726|gb|EEH42239.1| replication factor C subunit 5 [Paracoccidioides brasiliensis Pb18]
Length = 354
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 158/236 (66%), Gaps = 3/236 (1%)
Query: 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67
RP++LD + H++++ LK L D PHLL YGP G+GKKT I+A L+++FG G EK+K
Sbjct: 15 RPRSLDALTYHRELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGTGVEKIK 74
Query: 68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG 127
++ + ++ S N LE +SS H+E++PSD G DR VVQE++KE+A+ + +D
Sbjct: 75 IDARVFQT---STNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQQVDLSA 131
Query: 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRIN 187
K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + R+IL NS++ + IRSR L +R+
Sbjct: 132 KQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIIAPIRSRTLLVRVA 191
Query: 188 SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFT 243
+PTE +I +VL+ KKE G R+A++S R+LRRA+L FE Q + T
Sbjct: 192 APTEAEICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEKVT 247
>gi|451855756|gb|EMD69047.1| hypothetical protein COCSADRAFT_31825 [Cochliobolus sativus ND90Pr]
Length = 355
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP+ L+ + H +++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FK++V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDLGAKQRFKIVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PTE +I VL + KKEG + R+A+ S R+LR+A+L FE Q +
Sbjct: 180 LLVRVAAPTEAEICDVLSKVGKKEGWKDIESLHQRIAKDSGRNLRKALLMFEAVHAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 IT 241
>gi|341881278|gb|EGT37213.1| CBN-RFC-3 protein [Caenorhabditis brenneri]
Length = 354
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 164/241 (68%), Gaps = 9/241 (3%)
Query: 2 LWVDKYRPKTL---DQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQ 57
LWVDKYRPK L D V H + A +LK L DC PHLLF GP G+GKKT I LLR+
Sbjct: 3 LWVDKYRPKELLGKDGVDYHLEQASHLKFLAA--DCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
++G G +K ++ K++ N LE+ T+SS HVE++PSD G DR VVQ+++KEM
Sbjct: 61 LYGVGVDKTQLIMKSF---TTPTNRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDIVKEM 117
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
A+ I+T ++ FKV+VL E D L+R+AQH LRRTMEKY+ +C++ILCC S S++ E +
Sbjct: 118 AQTSQIETSSQKPFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEPL 177
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+SRC+ I + +P+++++ V+ I + E +Q+PS ++ EKS +LRRAIL+ E ++
Sbjct: 178 QSRCIIINVPAPSDDKMRAVINKIIEAEKIQIPSNILQKIIEKSEGNLRRAILTIEALKM 237
Query: 238 Q 238
+
Sbjct: 238 E 238
>gi|448514010|ref|XP_003867042.1| Rfc5 hypothetical proteineteropentameric replication factor C
subunit [Candida orthopsilosis Co 90-125]
gi|380351380|emb|CCG21604.1| Rfc5 hypothetical proteineteropentameric replication factor C
subunit [Candida orthopsilosis Co 90-125]
Length = 362
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/249 (44%), Positives = 159/249 (63%), Gaps = 14/249 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPKTL Q+ H+ I QNL+ L D PHLL YGP G+GKKT I L ++FG
Sbjct: 3 LWVDKYRPKTLSQLSYHESITQNLRALSKSGDFPHLLVYGPSGAGKKTRIYCTLHEIFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ K + + N LE LSS H+E++PSD G DR V+Q+++K++A
Sbjct: 63 SVEKLKIDVKNF---VTTSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDVASTE 119
Query: 122 PIDTKGKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D + FKV+++NE D LSR+AQ +LRRTMEKYS++ RLIL CNS S + I
Sbjct: 120 QVDFGNQNNRRHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-------FATRLAEKSNRSLRRAIL 230
+SR L +RI SP+ E I +L +A+KE ++ S F +++A S+ +LRR++L
Sbjct: 180 KSRTLLVRIPSPSVENISSILGHVAEKEHVKFSSSNGQEIAQFYSQVATTSHCNLRRSLL 239
Query: 231 SFETCRVQQ 239
+FET +Q
Sbjct: 240 AFETIYMQN 248
>gi|261195362|ref|XP_002624085.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239587957|gb|EEQ70600.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis SLH14081]
Length = 354
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 163/264 (61%), Gaps = 25/264 (9%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ----------------------DCPHLLF 39
L VD+ RP+ LD + H D++ LK LV+ Q D PHLL
Sbjct: 3 LLVDRLRPRNLDALTYHHDLSARLKSLVSIQNKSYIPQSIPTNDRARWQAQSGDFPHLLV 62
Query: 40 YGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99
YGP G+GKKT I+A L+++FGPG EK+K++ + ++ S N LE +SS H+E++P
Sbjct: 63 YGPSGAGKKTRIIATLKELFGPGVEKIKIDARVFQT---SSNRKLEFNIVSSIYHLEITP 119
Query: 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159
SD G DR VVQE++KE+A+ + +D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS
Sbjct: 120 SDVGNYDRVVVQELLKEVAQTQQVDLSARQRFKVVVINEADHLTRDAQAALRRTMEKYSP 179
Query: 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219
+ RLIL NS++ + IRSR L +R+ +PTE +I + L+ KKEG G R+A+
Sbjct: 180 NLRLILLANSTANIIAPIRSRTLLVRVAAPTEAEICQALQVAEKKEGWAEAPGLNKRIAK 239
Query: 220 KSNRSLRRAILSFETCRVQQLRFT 243
+S R+LRRA+L E Q + T
Sbjct: 240 ESGRNLRRALLMLEAIYAQNEKVT 263
>gi|308491749|ref|XP_003108065.1| CRE-RFC-3 protein [Caenorhabditis remanei]
gi|308248913|gb|EFO92865.1| CRE-RFC-3 protein [Caenorhabditis remanei]
Length = 370
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 162/241 (67%), Gaps = 9/241 (3%)
Query: 2 LWVDKYRPKTL---DQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQ 57
LWVDKYRPK L D V H + A +LK L DC PHLLF GP G+GKKT I LLR+
Sbjct: 3 LWVDKYRPKELIGKDGVDFHLEQANHLKFL--SGDCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
++G G +K ++ K + + N LE+ T+SS HVE++PSD G DR VVQ+++KEM
Sbjct: 61 LYGVGVDKTQLIMKPFTTPS---NRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDLVKEM 117
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
A+ I+ ++ FKV+VL E D L+R+AQH LRRTMEKY+ +C++ILCC S S++ E +
Sbjct: 118 AQTSQIEASSQKSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEPL 177
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+SRC+ I + +PT+E++ VL + +KE L++P ++ EKS +LRRAIL E ++
Sbjct: 178 QSRCIIINVPAPTDEEMTSVLMKVIQKEKLEMPQNILQKIVEKSEGNLRRAILMTEAIKM 237
Query: 238 Q 238
+
Sbjct: 238 E 238
>gi|341892055|gb|EGT47990.1| hypothetical protein CAEBREN_22178 [Caenorhabditis brenneri]
Length = 354
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 164/241 (68%), Gaps = 9/241 (3%)
Query: 2 LWVDKYRPKTL---DQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQ 57
LWVDKYRPK L D V H + A +LK L DC PHLLF GP G+GKKT I LLR+
Sbjct: 3 LWVDKYRPKELLGKDGVDYHLEQASHLKFLAA--DCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
++G G +K ++ K++ N LE+ T+SS HVE++PSD G DR VVQ+++KEM
Sbjct: 61 LYGVGVDKTQLIMKSF---TTPTNRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDIVKEM 117
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
A+ I+T ++ FKV+VL E D L+R+AQH LRRTMEKY+ +C++ILCC S S++ E +
Sbjct: 118 AQTSQIETSSQKPFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEPL 177
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+SRC+ I + +P+++++ V+ I + E +Q+PS ++ +KS +LRRAIL+ E ++
Sbjct: 178 QSRCIIINVPAPSDDKMRAVINKIIEAEKIQIPSNILQKIIDKSEGNLRRAILTIEALKM 237
Query: 238 Q 238
+
Sbjct: 238 E 238
>gi|171689292|ref|XP_001909586.1| hypothetical protein [Podospora anserina S mat+]
gi|170944608|emb|CAP70719.1| unnamed protein product [Podospora anserina S mat+]
Length = 352
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 161/242 (66%), Gaps = 3/242 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H +++ L+ L D PHLLFYGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDALTYHDELSDRLRSLAQSGDFPHLLFYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---SSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL S++ + IRSRC
Sbjct: 120 QVDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILVGESTAGIIAPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ PT ++ VL ++EG ++ G R+A +S R+LRRA+L E Q +
Sbjct: 180 LLVRVARPTVGEVEGVLRGSCEREGWEVREGLVGRVARESGRNLRRALLMLEGVYAQNEK 239
Query: 242 FT 243
T
Sbjct: 240 VT 241
>gi|17541990|ref|NP_502517.1| Protein RFC-3 [Caenorhabditis elegans]
gi|3874848|emb|CAA94339.1| Protein RFC-3 [Caenorhabditis elegans]
Length = 354
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 9/241 (3%)
Query: 2 LWVDKYRPKTL---DQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQ 57
LWVDKYRPK L D V H + A +LK L DC PHLLF GP G+GKKT I LLR+
Sbjct: 3 LWVDKYRPKDLLGKDGVDYHIEQANHLKFL--SADCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
++G G EK ++ K++ N LE+ T+SS H+E++PSD G DR VVQ+++KEM
Sbjct: 61 LYGVGVEKTQLIMKSF---TSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEM 117
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
A+ I++ +R FKV+VL E D L+R+AQH LRRTMEKY+ +C+++L C S S++ E +
Sbjct: 118 AQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPL 177
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+SRC+ I + +PT+E + KVL + ++E LP ++ EKS +LRRAIL E R+
Sbjct: 178 QSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRM 237
Query: 238 Q 238
+
Sbjct: 238 E 238
>gi|242809831|ref|XP_002485455.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716080|gb|EED15502.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
stipitatus ATCC 10500]
Length = 352
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 156/237 (65%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H +++ LK L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRLRPRSLDSLTYHPELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E I VL A+KE R+A +S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPSELDICAVLRSAAQKENWTQSDALNVRIARESGRNLRRALLMFEAIYAQ 236
>gi|268552547|ref|XP_002634256.1| C. briggsae CBR-RFC-3 protein [Caenorhabditis briggsae]
Length = 354
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 162/241 (67%), Gaps = 9/241 (3%)
Query: 2 LWVDKYRPKTL---DQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQ 57
LWVDKYRPK L D V H + A++LK L DC PHLLF GP G+GKKT I LLR+
Sbjct: 3 LWVDKYRPKELLGKDGVDYHLEQAKHLKFL--SADCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 58 VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
++G G +K ++ K + + N LE+ T+SS HVE++PSD G DR VVQ+++KEM
Sbjct: 61 LYGVGVDKTQLIMKAFTTPS---NRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDLVKEM 117
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
A+ I+ ++ FKV+VL E D L+R+AQH LRRTMEKY+ +C+++LCC S S++ E +
Sbjct: 118 AQTSQIEASSQKSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLCCESLSRIIEPL 177
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+SRC+ I + +PT+ ++ KVL + +KE L +P ++ EKS +LRRAIL E ++
Sbjct: 178 QSRCIIINVPAPTDVEVEKVLRKVIQKENLNMPDSVLQKIVEKSEGNLRRAILMTEAIKM 237
Query: 238 Q 238
+
Sbjct: 238 E 238
>gi|344228882|gb|EGV60768.1| hypothetical protein CANTEDRAFT_111192 [Candida tenuis ATCC 10573]
Length = 359
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 157/245 (64%), Gaps = 15/245 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP+ LD + H I +LK L + D PHLL YGP GSGKKT + A L ++FGP
Sbjct: 3 LWVDKYRPRRLDALSYHAPITASLKALASTGDFPHLLVYGPSGSGKKTRVYATLHELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ KT+ S N LE LSS H+E++PSD G DR V+Q+++K++A
Sbjct: 63 QVEKLKIDVKTF---TTSSNRKLEFNVLSSPFHLEITPSDMGNNDRVVIQDLLKDIASTE 119
Query: 122 PIDTKG-------KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+D K FKV+++NE D L+R+AQ +LRRTMEKYSA+ RLI+ N++S +
Sbjct: 120 QVDFSNSKNNGTPKHRFKVVIINEADSLTRDAQAALRRTMEKYSANIRLIMISNTTSNII 179
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-----SGFATRLAEKSNRSLRRAI 229
I+SR L +RI +P+ I +L +A KE + SGF +++A S+++LRRA+
Sbjct: 180 PPIKSRTLLVRIPAPSVADITAILADVATKESVHFTADPVQSGFLSQVAANSDQNLRRAL 239
Query: 230 LSFET 234
LSFET
Sbjct: 240 LSFET 244
>gi|212537245|ref|XP_002148778.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
marneffei ATCC 18224]
gi|210068520|gb|EEA22611.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
marneffei ATCC 18224]
Length = 352
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 158/237 (66%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VD+ RP++LD + H +++ LK L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LLVDRLRPRSLDSLTYHPELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQE++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQ---TTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQELLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS+S + IRSR
Sbjct: 120 QVDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+E +I VL+ A KE R+A++S R+LRRA+L FE Q
Sbjct: 180 LLVRVAAPSETEICAVLKSAAAKENWAPCDELNMRIAKESGRNLRRALLMFEAIYAQ 236
>gi|403356875|gb|EJY78044.1| Replication factor C subunit 3 [Oxytricha trifallax]
gi|403375729|gb|EJY87839.1| Replication factor C subunit 3 [Oxytricha trifallax]
Length = 371
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 158/239 (66%), Gaps = 3/239 (1%)
Query: 2 LWVDKYRPKTLDQV-IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF- 59
LWV+KYRP +D +H D + L +L D PH+LFYGP G+GK+TL LL++++
Sbjct: 7 LWVEKYRPLCIDDAKAIHSDTYKMLSQLAQSDDFPHILFYGPSGAGKRTLTKCLLQELYK 66
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
K+K E+K +K A S + +E SS H+E++PSDA QDR +VQ++IKE+A
Sbjct: 67 NNSVHKIKSEHKEFKASATSSTV-VECVVFSSNYHIEVTPSDADNQDRVIVQKLIKEVAG 125
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
++ +DTK ++ FKV+V++E+D L+REAQ +LRRTME Y CR+I C S SKV + +RS
Sbjct: 126 SQQLDTKAQKSFKVVVIHELDNLTREAQAALRRTMETYMPYCRIIANCESLSKVIQPLRS 185
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
RCL +R+ +P ++IV VL+ IA+ E LP A + S R+LRRAI+ +T +++
Sbjct: 186 RCLQVRVPAPNAQEIVGVLDQIARNENFDLPKQLAFSICNYSRRNLRRAIMMLQTAKLK 244
>gi|145504098|ref|XP_001438021.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405182|emb|CAK70624.1| unnamed protein product [Paramecium tetraurelia]
Length = 356
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 157/236 (66%), Gaps = 1/236 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW + +PK+LD + H +I++ L+KL D PHLLFYGP G+GKKT ++A L++V+G
Sbjct: 5 LWTESTKPKSLDSLDYHSEISEILRKLAKNSDFPHLLFYGPNGAGKKTRVLAFLKEVYGS 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G V E K +KI+ S N T LSS H++++PSDA D+ ++Q++IKE+A +
Sbjct: 65 GVYTVTEEEKEYKINETS-NTTTSCTVLSSKFHIDVAPSDADHHDKVIIQKLIKEVASSH 123
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+++K + FKV+++NEVD L++EAQ SLRRTMEKY CR+IL C S +K+ IRSRC
Sbjct: 124 QVNSKQTKDFKVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRSRC 183
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
L IR+ +P + Q+ ++L+ I+ + ++ ++A SN +LR AIL ++ RV
Sbjct: 184 LLIRVPAPDQTQVAQILDKISAQYNCKISQQLINKIAIASNGNLREAILYLQSTRV 239
>gi|340504015|gb|EGR30507.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 355
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 160/247 (64%), Gaps = 2/247 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD+YRPK L Q+ H+ + + LK L +D PHLLFYGP G+GKKT IM+ L +V+G
Sbjct: 4 LWVDQYRPKQLSQLDYHEKLTETLKSLAHSEDFPHLLFYGPNGAGKKTRIMSFLHEVYGN 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G K+K E + +K+ + S + E+ + S H++++P+DA DR ++Q++IKE+A
Sbjct: 64 GVHKIKAEEREFKVSSTS-SATCEINIIYSNYHIDVTPADAEVYDRVIIQKLIKEVASTH 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV++LNEVD+L+ EAQ SLRRTMEKY CRLILCC + +V + +RSRC
Sbjct: 123 QLDPTSQKSFKVVILNEVDRLTLEAQASLRRTMEKYVNRCRLILCCENIGRVIQPLRSRC 182
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
L IR+ +P E I+KV++ I +E L + ++ + R+LR IL+ + ++ +
Sbjct: 183 LLIRVPAPDEGDIIKVVKKIQNQENLPNISEEICRKMGDGFGRNLRDIILNLQMQKLNKS 242
Query: 241 RFTMPSV 247
F SV
Sbjct: 243 AFDGGSV 249
>gi|406602446|emb|CCH45987.1| putative replication factor C subunit 3 [Wickerhamomyces ciferrii]
Length = 344
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 166/254 (65%), Gaps = 20/254 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP TLD + H D+++ LK LV YGP G+GKKT ++A+L ++FG
Sbjct: 3 LWVDKYRPHTLDTIDYHFDVSKRLKALVV---------YGPSGAGKKTRVIAVLHELFGA 53
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ +T+ S N LE +SS H+E++PSD G DR V+Q+++KE+A+
Sbjct: 54 GVEKMKIDVRTF---TTSTNRKLEFNVVSSPYHMEITPSDLGNNDRVVIQDLLKEIAQTE 110
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D GK FKV+++NE D LSR+AQ +LRRTMEKYS + RL+L N++S + I+SR
Sbjct: 111 QVDFSGKHRFKVVIINEADSLSRDAQAALRRTMEKYSKNIRLVLISNTTSNIIAPIKSRT 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG------FATRLAEKSNRSLRRAILSFETC 235
L IRI++P + I K+L+ +++K+ + LPS R+A S R+LRRA+L+FE
Sbjct: 171 LLIRISAPNLQDITKILDKLSEKQEVSLPSSQEERELILNRVAIASKRNLRRALLNFEAL 230
Query: 236 RV--QQLRFTMPSV 247
+ Q+L+ T P +
Sbjct: 231 VMQNQELKTTTPMI 244
>gi|320586379|gb|EFW99058.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 352
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 157/237 (66%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RP++LD + H ++ L+ L D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3 LIVDKHRPRSLDTLTYHPELTDRLRALARSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ + N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 63 GVEKIKIDARVFQT---TSNRKLEFNIVASVYHMEITPSDVGNYDRVVVQDLLKEVAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL S++ + IRSR
Sbjct: 120 QVDQAARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLATSTANIIAPIRSRT 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +P+ ++I VL A++EG R+AE S R+LRRA+L +E Q
Sbjct: 180 LLVRVAAPSHDEICGVLAAAAQREGWPAVPALQRRVAEGSGRNLRRALLMYEAVHAQ 236
>gi|335748611|gb|AEH58814.1| replication factor C subunit 3 [Karenia brevis]
Length = 354
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 164/243 (67%), Gaps = 3/243 (1%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LWVDK+RPK+LD++ H D++ LKKL + + PH+LF GP G+GK T + A+LR+++G
Sbjct: 3 LLWVDKHRPKSLDEMDYHHDLSARLKKLAAQGNQPHMLFVGPSGAGKSTRVYAMLRELYG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG + +KVE K+ + S + +++ + S H+ L+PSD G +DR VV ++IKE+A +
Sbjct: 63 PGTDMIKVETKSVAPNPSSPSNTVDIQVVVSNYHLVLTPSDVGNKDRAVVMQLIKEVAAH 122
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ G FKV+V+ + + +AQ LRRTMEKY +CR+IL C+S+SK+ +RSR
Sbjct: 123 PPL---GNHTFKVVVIEDAGASNPQAQAPLRRTMEKYMKTCRIILMCDSASKIIAPLRSR 179
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
C +R+ +P+ E + KVL+ +A E LQLP FA ++AEKS R LRRA+L E+ Q
Sbjct: 180 CCAVRVGAPSNEDVQKVLQKVASAESLQLPPAFAFKVAEKSGRDLRRALLLLESAHAQAN 239
Query: 241 RFT 243
+F+
Sbjct: 240 QFS 242
>gi|409048764|gb|EKM58242.1| hypothetical protein PHACADRAFT_171504 [Phanerochaete carnosa
HHB-10118-sp]
Length = 357
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 163/238 (68%), Gaps = 4/238 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD YRPK+LD++ H+ ++ L+ L D PH+LFYGP G+GKKT I L+++FG
Sbjct: 3 LWVDCYRPKSLDELHYHESLSARLRSLAASGDFPHMLFYGPSGAGKKTRIACTLKELFGK 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + + + R +D+ + + S H+E++PS+ G DR V+QE++KE+A+ +
Sbjct: 63 GVEKLKIDQRVF-LTPSRRKLDVNV--VQSNFHLEITPSEVGNYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D + FKV+V+NE D L+R+AQ +LRRTMEKY ++ R+ILC NS+SK+ I+SRC
Sbjct: 120 QVDINARHRFKVVVINEADSLTRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIKSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRVQ 238
L +R+ +PTEE++V V++ +A ++ ++ +A + +LR+A+L FE ++Q
Sbjct: 180 LLVRVAAPTEEEMVTVMKHVASRQNFRIEDESVVCEIARDAEGNLRKALLVFEALKMQ 237
>gi|328855373|gb|EGG04500.1| hypothetical protein MELLADRAFT_37376 [Melampsora larici-populina
98AG31]
Length = 363
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 159/246 (64%), Gaps = 5/246 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RPK+LD + H + ++ L D PH LFYGP G+GKKT I A LR++FGP
Sbjct: 6 LLVDKHRPKSLDDLDYHPQLTNRIRSLAQTADFPHCLFYGPSGAGKKTRIAATLRELFGP 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GA K+++E + + + R LE+ + S H+EL+P+D DR V+Q+++KE+
Sbjct: 66 GAAKLRIEQRVFMTPSRRR---LEVQIIESNYHLELTPADLAQWDRSVIQDILKEVGGTT 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ R FKV+V++ D+L+ +AQ +LRRTME++++S RLILC NS+SK+ IRSRC
Sbjct: 123 QLDSTASRKFKVVVIHCADQLTLDAQAALRRTMERHTSSLRLILCANSTSKIIGPIRSRC 182
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +P +QIVKVL+ +A KE Q P A +A + +LR+AIL+ E R Q
Sbjct: 183 LLLRVGAPHPDQIVKVLQSVASKEDFIRQFPEETAMSIALSAEGNLRKAILTLEAIRAQD 242
Query: 240 LRFTMP 245
F+ P
Sbjct: 243 DTFSKP 248
>gi|440803530|gb|ELR24424.1| replication factor C (activator 1) 3, putative [Acanthamoeba
castellanii str. Neff]
Length = 303
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 146/191 (76%), Gaps = 3/191 (1%)
Query: 52 MALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111
MALLR++F G EK+K++++ +K+ + + +EL+ +SSA H+EL+PSDAG+ DR VVQ
Sbjct: 1 MALLRELFDAGVEKLKIDHRDFKLPSST---TIELSIVSSAYHIELNPSDAGYHDRLVVQ 57
Query: 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
EVIKE+A++ P+DT K FKV+VLNEV++LS+EAQH+LRRTMEKY + CRLILCCNS+S
Sbjct: 58 EVIKEIAQSPPLDTTNKPPFKVVVLNEVERLSKEAQHALRRTMEKYMSVCRLILCCNSTS 117
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
KV + +RSRCL IR+ +P+ +++ K L+ I+KKEG+ LP A +A +S+R+LR+AIL
Sbjct: 118 KVIDPVRSRCLMIRVAAPSLDEVTKSLQAISKKEGITLPPELARSIAVQSDRNLRKAILM 177
Query: 232 FETCRVQQLRF 242
+ + F
Sbjct: 178 LQATHTAKYPF 188
>gi|260942391|ref|XP_002615494.1| hypothetical protein CLUG_04376 [Clavispora lusitaniae ATCC 42720]
gi|238850784|gb|EEQ40248.1| hypothetical protein CLUG_04376 [Clavispora lusitaniae ATCC 42720]
Length = 386
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 165/249 (66%), Gaps = 15/249 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRPK L+ + H I ++L+ L + D PHLL YGP G+GKKT I L ++FG
Sbjct: 29 LWVDKYRPKKLENLSYHDSITKSLQSLASSGDFPHLLVYGPSGAGKKTRIYTTLNELFGA 88
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+K++ KT+ S N LE LSS +H+E++PSD G DR V+Q+++K++A
Sbjct: 89 QVEKMKIDVKTF---TTSSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTE 145
Query: 122 PID--TKG--KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+D ++G K FK++++NE D L+R+AQ +LRRTMEKYSA+ RLI+ CN+ + + I
Sbjct: 146 QVDFASQGRPKHRFKIVLINEADSLTRDAQAALRRTMEKYSANIRLIMVCNTIANIIAPI 205
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL--PSGFATR------LAEKSNRSLRRAI 229
+SR L +RI +P++ +I +L +A+KE ++ P+ R +AE S+R+LRRA+
Sbjct: 206 KSRTLLVRIPAPSKGEIASILSGVAEKEAVKFNPPNDDQARQVYLETVAEASDRNLRRAL 265
Query: 230 LSFETCRVQ 238
LSFET +Q
Sbjct: 266 LSFETLCMQ 274
>gi|335772678|gb|AEH58141.1| replication factor C subunit 3-like protein, partial [Equus
caballus]
Length = 304
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 149/201 (74%), Gaps = 7/201 (3%)
Query: 52 MALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111
M +LR+++G G EK+++E++T + + +E++T++S H+E++PSDAG DR V+Q
Sbjct: 1 MCILRELYGVGVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQ 57
Query: 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
E++K +A+++ ++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+S
Sbjct: 58 EMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTS 117
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
KV IRSRCL +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L
Sbjct: 118 KVIPPIRSRCLAVRVPAPSIEDICHVLTTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLM 177
Query: 232 FETCRVQQLRFT----MPSVD 248
E CRVQQ FT +P D
Sbjct: 178 CEACRVQQYPFTADQEIPETD 198
>gi|401881379|gb|EJT45679.1| DNA clamp loader [Trichosporon asahii var. asahii CBS 2479]
Length = 325
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 150/221 (67%), Gaps = 10/221 (4%)
Query: 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77
H ++++ LK L + D PH+LFYGP G+GKKT IMA LR+++GPG EK+K++ + +
Sbjct: 4 HSELSERLKSLASSGDFPHILFYGPSGAGKKTRIMATLRELYGPGVEKLKIDQRVF---V 60
Query: 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLN 137
N L++ + S H+EL+PSD G DR V+Q+++KE+A+ + +D K+ FKV+V+N
Sbjct: 61 TPSNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQVDLNAKQKFKVVVIN 120
Query: 138 EVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKV 197
E D LSR+AQ +LRRTMEKY + RLI+C NS+SK+ IRSRCL +R+ +PT+++
Sbjct: 121 EADSLSRDAQAALRRTMEKYMTNMRLIMCANSTSKIIAPIRSRCLLVRVAAPTDDE---- 176
Query: 198 LEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
+AKKE LP + + E ++ +LR+A+L E R+Q
Sbjct: 177 ---VAKKERFTLPPSASDAIIEAADGNLRKALLVMEAMRMQ 214
>gi|406701717|gb|EKD04831.1| DNA clamp loader [Trichosporon asahii var. asahii CBS 8904]
Length = 325
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 150/221 (67%), Gaps = 10/221 (4%)
Query: 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77
H ++++ LK L + D PH+LFYGP G+GKKT IMA LR+++GPG EK+K++ + +
Sbjct: 4 HSELSERLKSLASSGDFPHILFYGPSGAGKKTRIMATLRELYGPGVEKLKIDQRVF---V 60
Query: 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLN 137
N L++ + S H+EL+PSD G DR V+Q+++KE+A+ + +D K+ FKV+V+N
Sbjct: 61 TPSNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQVDFNAKQKFKVVVIN 120
Query: 138 EVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKV 197
E D LSR+AQ +LRRTMEKY + RLI+C NS+SK+ IRSRCL +R+ +PT+++
Sbjct: 121 EADSLSRDAQAALRRTMEKYMTNMRLIMCANSTSKIIAPIRSRCLLVRVAAPTDDE---- 176
Query: 198 LEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
+AKKE LP + + E ++ +LR+A+L E R+Q
Sbjct: 177 ---VAKKERFTLPPSASDAIIEAADGNLRKALLVMEAMRMQ 214
>gi|331236101|ref|XP_003330710.1| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309700|gb|EFP86291.1| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 360
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 162/244 (66%), Gaps = 5/244 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDKYRPK L+++ HQ ++ ++ L D PH LFYGP G+GKKT I A L ++FGP
Sbjct: 3 LLVDKYRPKKLEELDYHQGLSDRIRALARTADFPHCLFYGPSGAGKKTRIAATLTELFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GA+K++++ K + + R +D+++ + S H+EL+PSD G DR VVQ+V+KE+ ++
Sbjct: 63 GAQKLRIDQKVF-VTPSRRRLDVQV--VQSNYHLELTPSDVGQWDRSVVQDVLKEVGQSA 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D+ + FKV+V++ D+L+ +AQ +LRRTME+++++ RLILC S++K+ IRSRC
Sbjct: 120 QLDSGATQRFKVVVIHGADELTNDAQAALRRTMERHTSTMRLILCATSTAKIIGPIRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L +R+ +P EQI +VL ++ K LP A +A SN +LRRA+L+ + R Q
Sbjct: 180 LLLRVGAPNPEQIAQVLNNVSNKASFSTSLPDETAMAIALSSNGNLRRALLTLDAVRAQD 239
Query: 240 LRFT 243
F+
Sbjct: 240 ETFS 243
>gi|118353287|ref|XP_001009848.1| Replication factor C subunit, putative [Tetrahymena thermophila]
gi|89291681|gb|EAR89669.1| Replication factor C subunit, putative [Tetrahymena thermophila
SB210]
Length = 358
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 156/233 (66%), Gaps = 1/233 (0%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVD+ RPK+LD++ H + + L+KL +D PHLL YGP G+GKKT MA L++V+G
Sbjct: 4 LWVDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMAFLQEVYGN 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G KVK E + +K++ + + +E+ +SS H++++P+DA QDR V+Q++IKE+A
Sbjct: 64 GVHKVKSEEREFKVNPNT-STTVEVNIISSNYHLDVTPADAENQDRAVIQKLIKEVASTH 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D +R FKV+++NEVD+L+ EAQ SLRRTMEKY CRLIL + +V +RSRC
Sbjct: 123 QLDPNSQRRFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVILPLRSRC 182
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
L IR+ +P+E+ + V+ + ++ L +P A + A+ + +LR IL+ +T
Sbjct: 183 LLIRVAAPSEQDVKAVVRKLNNEKNLNIPDDLACKFAKSCDYNLRAVILNLQT 235
>gi|302657734|ref|XP_003020582.1| hypothetical protein TRV_05324 [Trichophyton verrucosum HKI 0517]
gi|291184430|gb|EFE39964.1| hypothetical protein TRV_05324 [Trichophyton verrucosum HKI 0517]
Length = 299
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/206 (48%), Positives = 143/206 (69%), Gaps = 3/206 (1%)
Query: 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92
D PHLL YGP G+GKKT I+A L++++GPG EK+K++ + ++ S N LE +SS
Sbjct: 5 DFPHLLVYGPSGAGKKTRIIATLKELYGPGVEKIKIDARVFQT---SSNRKLEFNIVSSI 61
Query: 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
H+EL+PSD G DR VVQE++KE+A+ + +D K+ FKV+V+NE D L+R+AQ +LRR
Sbjct: 62 YHLELTPSDVGTYDRVVVQELLKEIAQTQQVDQSAKQRFKVVVINEADHLTRDAQAALRR 121
Query: 153 TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212
TMEKYS + RLIL N+++ + IRSR L +R+ +P+E+ I +VL+ KKEG G
Sbjct: 122 TMEKYSPNMRLILLANTTANIIAPIRSRTLLVRVPAPSEDDICQVLKLAGKKEGWNDCPG 181
Query: 213 FATRLAEKSNRSLRRAILSFETCRVQ 238
RLA++S R+LRRA+L FE Q
Sbjct: 182 LNKRLAKESGRNLRRALLMFEAVHAQ 207
>gi|254567163|ref|XP_002490692.1| Replication factor C [Komagataella pastoris GS115]
gi|238030488|emb|CAY68412.1| Replication factor C [Komagataella pastoris GS115]
gi|328351077|emb|CCA37477.1| Replication factor C subunit 5 [Komagataella pastoris CBS 7435]
Length = 369
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 156/247 (63%), Gaps = 16/247 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW DKYRPKTLD + H I+ L L T D PHLLF+GP G+GKKT I+A LRQ++GP
Sbjct: 3 LWADKYRPKTLDDLDYHGKISNMLSSLATSGDFPHLLFHGPSGAGKKTRILATLRQIYGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+KV+ K + + A R LE +SS NH+E++PSD DR V+Q+++KE+A+
Sbjct: 63 NIEKLKVDPKVF-VTATKRK--LEFNVVSSPNHLEITPSDMNNNDRVVIQDLLKEVAQTE 119
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
ID K FKV+++NE + L+R+AQ +LRRTMEKYSA+ RL+L CNS S + E I
Sbjct: 120 TIDFTHVADHKNRFKVVIINEAELLTRDAQAALRRTMEKYSANIRLVLVCNSISSIIEPI 179
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKE---GLQLPSG------FATRLAEKSNRSLRRA 228
+SR L IR+ +PT+E++ V E + + + P+ +++A+ ++ +LR
Sbjct: 180 KSRTLLIRVAAPTDEEMGSVFEKVLRDQPEVAKSFPADETERQQIYSKIAKVTDHNLRTG 239
Query: 229 ILSFETC 235
+L E
Sbjct: 240 LLLLEAL 246
>gi|299749385|ref|XP_001838721.2| DNA clamp loader [Coprinopsis cinerea okayama7#130]
gi|298408416|gb|EAU83080.2| DNA clamp loader [Coprinopsis cinerea okayama7#130]
Length = 314
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 145/213 (68%), Gaps = 3/213 (1%)
Query: 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92
D PH+LFYGP G+GKKT I L+Q+FG G EK+K++ + + + + +E+ + S
Sbjct: 12 DFPHMLFYGPSGAGKKTRISCTLKQLFGAGVEKLKIDQRVFLTPSKRK---MEINIVQSN 68
Query: 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
H+E++PS+AG DR +VQE++KE+A+ + +D K+ FKV+V+NE D LSR+AQ +LRR
Sbjct: 69 YHIEITPSEAGNYDRLIVQEILKEIAQTQQVDLNAKQRFKVVVINEADSLSRDAQAALRR 128
Query: 153 TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212
TMEKY ++ R+ILC NS+SK+ I+SRCL IR+ +P EE++ VL ++A++ G LP
Sbjct: 129 TMEKYMSNMRIILCANSTSKLIAPIKSRCLLIRVAAPNEEEMATVLNYVARRAGFDLPPE 188
Query: 213 FATRLAEKSNRSLRRAILSFETCRVQQLRFTMP 245
A + + S +LR+AIL E ++Q T P
Sbjct: 189 AAKEIIDDSGGNLRKAILVLEALKMQSPDLTGP 221
>gi|346972442|gb|EGY15894.1| replication factor C subunit 5 [Verticillium dahliae VdLs.17]
Length = 350
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 159/242 (65%), Gaps = 5/242 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L VDK+RPK+LD + H +++ L L + P L YGP G+GKKT I+A L++++G
Sbjct: 3 LIVDKHRPKSLDALTYHPELSDRLSSL--RRLPPTSLVYGPSGAGKKTRIVATLKELYGS 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+K++ + ++ S N LE ++S H+E++PSD G DR VVQ+++KE+A+ +
Sbjct: 61 GVEKIKIDARVFQ---TSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 117
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D ++ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSR
Sbjct: 118 QVDQAARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 177
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
L +R+ +PT +I VL A++EG + G R+A++S R+LRRA+L +E Q +
Sbjct: 178 LLVRVAAPTHAEICDVLGQSAEREGWPVAKGLHMRIAQESGRNLRRALLMYEAVHAQNEK 237
Query: 242 FT 243
T
Sbjct: 238 VT 239
>gi|367006843|ref|XP_003688152.1| hypothetical protein TPHA_0M01430 [Tetrapisispora phaffii CBS 4417]
gi|357526459|emb|CCE65718.1| hypothetical protein TPHA_0M01430 [Tetrapisispora phaffii CBS 4417]
Length = 356
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 160/240 (66%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKL-VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPKT+ ++ + + + L L V +D PHLL YGP GSGKKT MALL +FG
Sbjct: 3 LWVDKYRPKTISKLSHNDSLTEFLTSLTVQARDLPHLLLYGPNGSGKKTRCMALLEAIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF---VTPSNKKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE D L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEADSLTRDAQAALRRTMEKYSKNIRLIMICDSMSSIIS 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+SRCL IR ++PT+E+IV +L+ IA+KEG+ + S ++A +++ +LR AIL E+
Sbjct: 180 PIKSRCLMIRSSAPTDEEIVNILKDIAEKEGVTVASDDILKKVAIEADGNLRVAILMLES 239
>gi|385302248|gb|EIF46388.1| activator 1 40 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 382
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 163/264 (61%), Gaps = 25/264 (9%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW DKYRPKTL Q+ H DI++ LK L D PH+L YGP G+GKKT M+LL +++G
Sbjct: 3 LWADKYRPKTLGQLTYHPDISKKLKLLAKSGDFPHILMYGPSGAGKKTRCMSLLHELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G +++KV+ KT++ +G + LE +SS H+E++PSD G DR V+QE++K++ +
Sbjct: 63 GVDRLKVDVKTFQTPSGRK---LEFNVISSPFHMEITPSDMGNNDRIVIQELLKDIGQTE 119
Query: 122 PIDTKG-------------KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168
ID G K+ FKV+++NE ++LSR+AQ +LRRTMEK+SA+ RL+L C
Sbjct: 120 SIDFAGLLKGEDTKVISNNKKRFKVVIINEAEQLSRDAQAALRRTMEKFSANIRLVLICT 179
Query: 169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATR------LAE 219
S+S + + I+SR L IR+ P+ ++ +VLE I E + + PS + R +A+
Sbjct: 180 STSNIIDPIKSRTLAIRVGLPSIDECGQVLETILSHESMARKEFPSDQSERYEIYRHIAD 239
Query: 220 KSNRSLRRAILSFETCRVQQLRFT 243
N++LR I+ E + + T
Sbjct: 240 ACNQNLRMGIMMLEALYMNNDKVT 263
>gi|313226190|emb|CBY21333.1| unnamed protein product [Oikopleura dioica]
Length = 357
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW D+YRPKT ++ + A+ L+++V E D PHLLF+G G+GKKT I +LR+++G
Sbjct: 3 LWCDRYRPKTFKELDYNLKQAKQLQRMVKEGDFPHLLFWGTNGAGKKTRINCILRELYGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G +K+++E + + N LEL +S H+E+ P+DAG DR V+QE++K +A +
Sbjct: 63 GVDKLRLERHEY---TTASNKKLELHACASNYHIEICPADAGIHDRIVIQELVKGIAGGQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++ ++ FKV+V+ E ++L+++AQH LRRTMEKY ++CR+IL S+SK+ A+RSRC
Sbjct: 120 SLNNDKQKQFKVIVITEANRLTKDAQHGLRRTMEKYMSTCRMILLSESTSKLIPALRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
L IR+ +P+ E++ + L + E ++ R+ + S+R+LR+A+L E C+V+ +
Sbjct: 180 LGIRVQAPSTEEVKQCLMQACEIERFEMTDEQINRIVKLSDRNLRKALLLGEVCKVKNI 238
>gi|156836873|ref|XP_001642477.1| hypothetical protein Kpol_264p5 [Vanderwaltozyma polyspora DSM
70294]
gi|156113011|gb|EDO14619.1| hypothetical protein Kpol_264p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 356
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 160/240 (66%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRP+TLD + + + + LK L + +D PHLL YGP GSGKKT MALL +FG
Sbjct: 3 LWVDKYRPRTLDSLTHNGSLTELLKSLSHQPKDLPHLLLYGPNGSGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G ++K++ + + S N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 SGVYRLKIDVRQF---VTSSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPID-TKGKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + K G +K +V+NE D L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQESKDGLAHRYKCVVINEADSLTRDAQAALRRTMEKYSKNIRLIMVCDSMSSIIP 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFET 234
I+SRCL IR ++PT++++V+ L ++KKE LQ+ S ++A +S+ +LR +L E+
Sbjct: 180 PIKSRCLMIRCSAPTDDEVVQNLMEVSKKENLQIESNDILNKIAIESDGNLRLGLLMLES 239
>gi|320584115|gb|EFW98326.1| Replication factor C [Ogataea parapolymorpha DL-1]
Length = 381
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 159/263 (60%), Gaps = 28/263 (10%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW DKYRP+TL ++ H I++ L+ + + + PHLL YGPPG+GKKT ++A LR+++G
Sbjct: 3 LWADKYRPRTLSELDFHPKISRQLQVMASSGEFPHLLVYGPPGAGKKTRVLATLREIYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G E+++V+ K + + +G + LE +SS+ H+E++PSD G DR V+Q+++KE+ +
Sbjct: 63 GTERLRVDVKAFNLPSGRK---LEFNVISSSFHLEITPSDMGNNDRIVIQDLLKEIGQIE 119
Query: 122 PID----------------TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLIL 165
+D GK+ FKV+++NE + L+R+AQ +LRRTMEKYSA+ RLIL
Sbjct: 120 SLDFSRFENAVMSPNTKEQNSGKKKFKVVIINEAELLTRDAQAALRRTMEKYSANIRLIL 179
Query: 166 CCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL---QLPSG------FATR 216
CNS+S + + I+SR L IRI SPT VL I +KE P R
Sbjct: 180 ICNSTSNIIDPIKSRTLPIRIASPTTSACAGVLGMILRKEHHAKKAFPDDDEQRNIIFKR 239
Query: 217 LAEKSNRSLRRAILSFETCRVQQ 239
+++ S R+LR +I+ E +
Sbjct: 240 ISDASERNLRMSIMMMEAMYMNH 262
>gi|50304249|ref|XP_452074.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641206|emb|CAH02467.1| KLLA0B12221p [Kluyveromyces lactis]
Length = 355
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 155/243 (63%), Gaps = 9/243 (3%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPKTL + ++++ L L + QD PHLLFYGP G+GKKT MALL+++FG
Sbjct: 3 LWVDKYRPKTLQSLSYNEELTNQLYSLTRQPQDLPHLLFYGPNGAGKKTRCMALLQEIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G K+K++ + + N LEL +SS H+E++PSD G DR V+QE+IKE+A+
Sbjct: 63 SGVYKLKIDVRQF---VTPSNRKLELNVVSSPYHLEITPSDIGNNDRVVIQELIKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE D L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEADSLTRDAQAALRRTMEKYSGNIRLIMLCDSMSSIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
I+SRCL +R+ SP+ ++ V +L+ KE + R+A S +LR ++L+ E+
Sbjct: 180 PIKSRCLLVRVPSPSLQETVSILQDCCSKEKITAEGNCLERIANLSKGNLRMSLLALEST 239
Query: 236 RVQ 238
+Q
Sbjct: 240 SLQ 242
>gi|449018306|dbj|BAM81708.1| replication factor C subunit 3 [Cyanidioschyzon merolae strain 10D]
Length = 386
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 161/255 (63%), Gaps = 23/255 (9%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59
+LWVD+ RP T + +VH+++ + L++L + PHLLFYGP GSGK+T + LLR+++
Sbjct: 16 LLWVDRCRPTTFEACVVHKELNERLRRLSESPAHLPHLLFYGPAGSGKRTRVRLLLRELY 75
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G + VE++ ++ R+ LE TT+SSA H+EL+PSD G+ DR +VQ VIKE+A
Sbjct: 76 GIAVDHSHVEHRLVRVGDPPRS--LEYTTVSSAYHIELNPSDVGYSDRLLVQAVIKEIAG 133
Query: 120 NRPI----------------DTKGKR-GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCR 162
+RP+ +T KR +KV+VL++VD+L+REAQ +LRRTMEKY+ +CR
Sbjct: 134 SRPLLSSAEQDAMVEGGTSTETASKRLPYKVVVLHDVDRLTREAQQALRRTMEKYAQTCR 193
Query: 163 LILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK---EGLQLPSGFATRLAE 219
L+L +S+++V E +RSRCL IR+ +P+E ++ VL + ++ P
Sbjct: 194 LVLIADSATRVLEPLRSRCLGIRVRAPSETELRTVLRQVWQRMVHSAESPPEALLDHAIR 253
Query: 220 KSNRSLRRAILSFET 234
S+ +LR A+LS E
Sbjct: 254 ASDGNLRSALLSLEA 268
>gi|367015340|ref|XP_003682169.1| hypothetical protein TDEL_0F01470 [Torulaspora delbrueckii]
gi|359749831|emb|CCE92958.1| hypothetical protein TDEL_0F01470 [Torulaspora delbrueckii]
Length = 354
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 162/257 (63%), Gaps = 15/257 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVF 59
LWVDKYRPK+L Q + H D NL + ++ Q D PHLL YGP GSGKKT M+LL +F
Sbjct: 3 LWVDKYRPKSL-QTLSHNDDLTNLLQSLSHQPRDLPHLLLYGPNGSGKKTRCMSLLASIF 61
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G G ++K++ + + + R +DL + +SSA H+E++PSD G DR V+QE++KE+A+
Sbjct: 62 GSGVYRMKIDVRQF-VTPSRRKLDLNV--VSSAYHLEITPSDMGINDRIVIQELLKEVAQ 118
Query: 120 NRPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+D + +K +V+NE D L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 119 MEQVDFQDSADGLSHRYKCVVINEADSLTRDAQAALRRTMEKYSRNIRLIMVCDSMSSII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFE 233
I+SRCL +R +PT+++ +K+L + E ++L S ++A SN +LR A+L+ E
Sbjct: 179 SPIKSRCLMVRCPAPTDQETIKILNEVVTAENVKLESPEVLEKIATTSNGNLRTALLTLE 238
Query: 234 TCRVQ---QLRFTMPSV 247
T + LR P +
Sbjct: 239 TMALNNEMNLRLNTPVI 255
>gi|76154829|gb|AAX26239.2| SJCHGC08481 protein [Schistosoma japonicum]
Length = 193
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 139/191 (72%), Gaps = 3/191 (1%)
Query: 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77
H++ A+NLKKL+ D PHLL YGP G+GK+T IM +LR+++G G +K+++E+ T+
Sbjct: 4 HKNYAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELYGSGVDKLRMEHHTF---T 60
Query: 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLN 137
N + L+T+SS H+E++PSD G DR V+QE+IK MA +D+ ++ FKV+VL+
Sbjct: 61 NPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTAQLDSGQQKDFKVVVLH 120
Query: 138 EVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKV 197
E D L+R+AQH+LRRTMEKY ++CRLIL S+SK+ A RSRCL IR+++P+ ++IV++
Sbjct: 121 EADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLPIRVSAPSTDEIVEI 180
Query: 198 LEFIAKKEGLQ 208
L+ + ++ +
Sbjct: 181 LKILLVEKAIH 191
>gi|410082151|ref|XP_003958654.1| hypothetical protein KAFR_0H01090 [Kazachstania africana CBS 2517]
gi|372465243|emb|CCF59519.1| hypothetical protein KAFR_0H01090 [Kazachstania africana CBS 2517]
Length = 360
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L + D+ + L L +D PHLL YGP GSGKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLKTLSHSSDLTELLTSLSEHPRDLPHLLLYGPNGSGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDIRQF-VTASNRK--LELNVVSSPYHIEITPSDMGNNDRIVIQELLKEIAQM 119
Query: 121 RPIDTKG-KRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + K G +K +++NE + LSR+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFENSKEGLAHRYKCVIINEANSLSRDAQAALRRTMEKYSKNIRLIMLCDSMSSIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFET 234
I+SRCL IR +P +++V +L I +E +QL SG +A+++N +LR A L E+
Sbjct: 180 PIKSRCLLIRCPAPANDELVSILSRIVTEENVQLESGVILNNIAKEANGNLRVATLMLES 239
>gi|242205746|ref|XP_002468730.1| predicted protein [Postia placenta Mad-698-R]
gi|220732115|gb|EED85953.1| predicted protein [Postia placenta Mad-698-R]
Length = 192
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 137/193 (70%), Gaps = 3/193 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDK+RP+TLD + H+ ++ L+ L D PH+LFYGP G+GKKT I LR+++G
Sbjct: 3 LWVDKHRPRTLDDLHYHESLSARLRALAALGDFPHMLFYGPSGAGKKTRIACTLRELYGK 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GAEK+K++ + + + + L++ + S H+E++PS+ G DR V+QE++KE+A+ +
Sbjct: 63 GAEKLKIDQRVFMTPSRRK---LDVNVVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+D K+ FKV+V+NE D LSR+AQ +LRRTMEKY + R+ILC NS+S++ I+SRC
Sbjct: 120 QVDLSAKQRFKVVVINEADSLSRDAQAALRRTMEKYMTNLRIILCANSTSRLIAPIKSRC 179
Query: 182 LNIRINSPTEEQI 194
L +R+ +PT E++
Sbjct: 180 LLVRVAAPTTEEV 192
>gi|254584388|ref|XP_002497762.1| ZYRO0F12914p [Zygosaccharomyces rouxii]
gi|238940655|emb|CAR28829.1| ZYRO0F12914p [Zygosaccharomyces rouxii]
Length = 352
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 163/257 (63%), Gaps = 15/257 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVF 59
LWVDKYRP++LD + H ++ + +++Q D PHLL YGP GSGKKT MALL +F
Sbjct: 3 LWVDKYRPRSLD-TLSHNGHLTSVLQSISQQPRDLPHLLLYGPNGSGKKTRCMALLESIF 61
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G G K+K++ + + N L+L +SSA H+E++PSD G DR V+Q+++KE+A+
Sbjct: 62 GQGVYKMKIDVRQF---VTPSNRKLDLNVVSSAYHLEITPSDMGINDRIVIQQLLKEVAQ 118
Query: 120 NRPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+D + + +K +V+NE D L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 119 MEQVDFQESQDGLAHRYKCVVINEADSLTRDAQAALRRTMEKYSRNVRLIMLCDSVSSII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR-LAEKSNRSLRRAILSFE 233
I+SRC +R +P ++ V +L ++A KE +QL S + +A++S +LR+A+L E
Sbjct: 179 SPIKSRCFMVRCPAPPNDETVNILNYVASKEKVQLESDEVLKVIAQESEGNLRKALLMLE 238
Query: 234 T---CRVQQLRFTMPSV 247
+ C QL+ + P +
Sbjct: 239 SMALCNEMQLKKSTPII 255
>gi|403217005|emb|CCK71500.1| hypothetical protein KNAG_0H00850 [Kazachstania naganishii CBS
8797]
Length = 357
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 160/255 (62%), Gaps = 15/255 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVF 59
LWVDKYRP+TL Q + H D +L + EQ D PHLL YGP G+GKKT M LL +F
Sbjct: 3 LWVDKYRPRTLKQ-LNHSDELTHLLTSLQEQPRDLPHLLLYGPNGAGKKTRCMCLLESIF 61
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G G ++K++ + + N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 62 GGGVYRLKIDVRHF---VTPSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118
Query: 120 NRPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+D + + +K +V+NE L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 119 MEQVDFENSKDGIAHRYKCVVINEAHSLTRDAQAALRRTMEKYSRNIRLIMICDSMSPII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFE 233
IRSRC+ IR +PT+++ +K+L +A KE +++ SG ++ E+S+ +LR A L E
Sbjct: 179 APIRSRCMLIRCPAPTDDETIKILAEVASKENVKVESGSVFQKIVEQSSGNLRVATLMLE 238
Query: 234 T---CRVQQLRFTMP 245
+ C QL+ + P
Sbjct: 239 SMSLCNEMQLKMSTP 253
>gi|365982197|ref|XP_003667932.1| hypothetical protein NDAI_0A05340 [Naumovozyma dairenensis CBS 421]
gi|343766698|emb|CCD22689.1| hypothetical protein NDAI_0A05340 [Naumovozyma dairenensis CBS 421]
Length = 358
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 156/241 (64%), Gaps = 12/241 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVF 59
LWVDKYRPKTL + + H + N+ K ++ Q D PHLL YGP GSG+KT MALL +F
Sbjct: 3 LWVDKYRPKTL-KTLSHTESLTNVLKSLSHQPKDLPHLLMYGPNGSGRKTRCMALLESIF 61
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G G ++K++ + + + N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 62 GSGIYRLKIDIRQF---VTASNKKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118
Query: 120 NRPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+D + +K +++N+ + L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 119 MEQVDFQDSNDGLAHRYKCVIINDANSLTRDAQAALRRTMEKYSRNIRLIMLCDSMSSII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFE 233
IRSRCL IR+ +P +IV +L +A KE +++ +G +A++SN +LR A+L E
Sbjct: 179 SPIRSRCLMIRVPAPLNGEIVNILNEVASKENVKIENGSILNHIAKESNANLRVALLMLE 238
Query: 234 T 234
+
Sbjct: 239 S 239
>gi|363755746|ref|XP_003648088.1| hypothetical protein Ecym_7452 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892124|gb|AET41271.1| hypothetical protein Ecym_7452 [Eremothecium cymbalariae
DBVPG#7215]
Length = 356
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 158/253 (62%), Gaps = 9/253 (3%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L + + + L L + +D PH+LFYGP GSGKKT M+LL +FG
Sbjct: 3 LWVDKYRPKSLSSLSHSPILTKQLDALASSAKDLPHVLFYGPDGSGKKTRCMSLLAGIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G K+K++ + + + + +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 SGVFKMKIDARQFVMQSNNRK--LELNVISSPYHLEITPSDMGNNDRVVIQELLKEVAQM 120
Query: 121 RPIDTKG-----KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + R +K +V+NE D L+R+AQ +LRRTMEKYS + R+ + C+S S +
Sbjct: 121 EQVDFQTTSDGLARRYKCIVINEADALTRDAQAALRRTMEKYSRNIRIFMLCDSMSNIIA 180
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET- 234
I+SRCL +R+ +P ++ K++E + EG+ +AE SN +LR A+L+ E+
Sbjct: 181 PIKSRCLVVRVPAPQTLEMAKIMETVCMSEGVTASEQKLQEIAEFSNGNLRLALLTLESM 240
Query: 235 CRVQQLRFTMPSV 247
C L+ T +V
Sbjct: 241 CFQNDLKLTDSAV 253
>gi|353234656|emb|CCA66679.1| probable RFC5-DNA replication factor C, 40 KD subunit
[Piriformospora indica DSM 11827]
Length = 325
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 141/203 (69%), Gaps = 3/203 (1%)
Query: 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
+LFYGP G+GKKT I LR++FG G EK+K++ + + + R +DL + + S H+E
Sbjct: 1 MLFYGPSGAGKKTRIAGTLRELFGAGTEKLKIDQRVF-MTPSRRKLDLNI--VQSNYHIE 57
Query: 97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156
++PSD G DR V+QE++KE+A+ + +D K+ FKV+V+NE D L+R+AQ +LRRTMEK
Sbjct: 58 ITPSDVGIYDRVVIQEILKEIAQTQQVDLGAKQRFKVVVINEADSLTRDAQAALRRTMEK 117
Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216
Y A+ R+ILC S+SK+ I+SRCL +R+ +PT++++ VL+++AKKE L A+
Sbjct: 118 YMANMRIILCSTSTSKLIAPIKSRCLLVRVGAPTDDEMTSVLQYVAKKERFTLSDEVASN 177
Query: 217 LAEKSNRSLRRAILSFETCRVQQ 239
+A ++ + R+A+L E ++Q
Sbjct: 178 IARDADGNTRKAVLMLEAMKMQH 200
>gi|323338653|gb|EGA79869.1| Rfc5p [Saccharomyces cerevisiae Vin13]
Length = 356
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 158/240 (65%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ LK L + +D PHLL YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+SRCL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>gi|398364719|ref|NP_009644.3| replication factor C subunit 5 [Saccharomyces cerevisiae S288c]
gi|586518|sp|P38251.1|RFC5_YEAST RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5; AltName: Full=Activator 1 40 kDa subunit
gi|476048|emb|CAA55595.1| YBR0810 [Saccharomyces cerevisiae]
gi|536354|emb|CAA85036.1| RFC5 [Saccharomyces cerevisiae]
gi|841471|gb|AAC49065.1| Rfc5p [Saccharomyces cerevisiae]
gi|51013797|gb|AAT93192.1| YBR087W [Saccharomyces cerevisiae]
gi|151946482|gb|EDN64704.1| replication factor C subunit 5 [Saccharomyces cerevisiae YJM789]
gi|190408751|gb|EDV12016.1| replication factor C subunit 5 [Saccharomyces cerevisiae RM11-1a]
gi|207347704|gb|EDZ73792.1| YBR087Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274035|gb|EEU08949.1| Rfc5p [Saccharomyces cerevisiae JAY291]
gi|285810423|tpg|DAA07208.1| TPA: replication factor C subunit 5 [Saccharomyces cerevisiae
S288c]
gi|290878103|emb|CBK39162.1| Rfc5p [Saccharomyces cerevisiae EC1118]
gi|323305938|gb|EGA59673.1| Rfc5p [Saccharomyces cerevisiae FostersB]
gi|323334562|gb|EGA75936.1| Rfc5p [Saccharomyces cerevisiae AWRI796]
gi|323349712|gb|EGA83927.1| Rfc5p [Saccharomyces cerevisiae Lalvin QA23]
gi|349576467|dbj|GAA21638.1| K7_Rfc5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365767135|gb|EHN08623.1| Rfc5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392300928|gb|EIW12017.1| Rfc5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 354
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 158/240 (65%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ LK L + +D PHLL YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+SRCL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>gi|323310134|gb|EGA63327.1| Rfc5p [Saccharomyces cerevisiae FostersO]
Length = 317
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 158/240 (65%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ LK L + +D PHLL YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+SRCL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>gi|366988537|ref|XP_003674035.1| hypothetical protein NCAS_0A10960 [Naumovozyma castellii CBS 4309]
gi|342299898|emb|CCC67654.1| hypothetical protein NCAS_0A10960 [Naumovozyma castellii CBS 4309]
Length = 356
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 159/257 (61%), Gaps = 15/257 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVF 59
LWVDKYRPKTL + + H + L +++Q D PHLLFYGP GSGKKT M LL +F
Sbjct: 3 LWVDKYRPKTL-KTLSHTEPLTALLNSLSQQPKDLPHLLFYGPNGSGKKTRCMTLLESIF 61
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G G ++K++ + + N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 62 GSGVYRLKIDIREF---VTPSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118
Query: 120 NRPID-TKGKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+D + K G +K +V+NE + L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 119 MEQVDFQESKDGLAHRYKCVVINEANSLTRDAQAALRRTMEKYSRNIRLIMLCDSMSSII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFE 233
IRSRCL +R+ +P +IV +L + + E + L +G ++A + N +LR A+L E
Sbjct: 179 SPIRSRCLMVRVPAPVNNEIVSILGNVVEMEKINLENGSILNQIARECNGNLRTALLMLE 238
Query: 234 TCRVQ---QLRFTMPSV 247
+ + QL+ P V
Sbjct: 239 SMSLNNEMQLKVGTPIV 255
>gi|50513625|pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 158/240 (65%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ LK L + +D PHLL YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+S+CL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+
Sbjct: 180 PIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>gi|323356056|gb|EGA87861.1| Rfc5p [Saccharomyces cerevisiae VL3]
Length = 354
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 157/240 (65%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ L L + +D PHLL YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLXSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
PG ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+SRCL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>gi|294889964|ref|XP_002773015.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239877718|gb|EER04831.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 274
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 148/237 (62%), Gaps = 6/237 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
VD RP LD++ H + + L+KL +DCPHLLFYGP G GK T I LL +FGP
Sbjct: 3 FLVDSERPHKLDELTFHPGLTKTLRKLAASKDCPHLLFYGPSGGGKITRIRCLLEAMFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK + +K +++ +++ + SA HVE++PSD G +D V+Q++IK+MA+N
Sbjct: 63 GVEKTSTSFRQFK---PTKSTTVDIQVVVSAFHVEVTPSDVGIRDAAVIQQLIKQMAENP 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G+ + V+V+N+ L+R+AQ +LRRTMEKY + R I + + + +RSRC
Sbjct: 120 PV---GEVPYHVVVINDAHCLTRQAQAALRRTMEKYVSKIRFIFHAEALAPLIPPLRSRC 176
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
L IR+ PT+ ++ + + I+K+ L L SG TR+ E+SN +R A++ +T R++
Sbjct: 177 LGIRVPRPTQIELQQEMMEISKRHDLGLNSGLCTRIVEESNCDVRLALIRLDTLRMK 233
>gi|255715673|ref|XP_002554118.1| KLTH0E14696p [Lachancea thermotolerans]
gi|238935500|emb|CAR23681.1| KLTH0E14696p [Lachancea thermotolerans CBS 6340]
Length = 384
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 150/244 (61%), Gaps = 14/244 (5%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+LD + + LK L E +D PHLLFYGP G+GKKT MALL+ +FG
Sbjct: 29 LWVDKYRPKSLDALTHTPRLTHLLKSLSVEPRDLPHLLFYGPNGAGKKTRCMALLQSIFG 88
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G K+K++ + + + N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 89 SGVYKLKIDVRQFTTPS---NRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 145
Query: 121 RPIDTKGKRG---------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
+D + G +K +++NE D L+R+AQ +LRRTMEKYS + R I+ C S S
Sbjct: 146 EQVDFQTASGAETGGLAHRYKCVIINEADSLTRDAQAALRRTMEKYSRNIRFIMLCESMS 205
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAIL 230
+ I+SRCL +R +PT ++ L + +E + + +AE + +LR+A+L
Sbjct: 206 SMIAPIKSRCLLVRTPAPTTQETADALVKVGGQEKVTVEDEAILNTIAESCDGNLRKALL 265
Query: 231 SFET 234
+FE+
Sbjct: 266 TFES 269
>gi|365762051|gb|EHN03666.1| Rfc5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841849|gb|EJT44172.1| RFC5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 354
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 153/241 (63%), Gaps = 12/241 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVF 59
LWVDKYRPK+L+ + H D N K + +Q D PHLL YGP G+GKKT MALL +F
Sbjct: 3 LWVDKYRPKSLN-ALSHNDELTNFLKSLADQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61
Query: 60 GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
G G ++K++ + + S N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 62 GAGVYRLKIDVRQF---VTSSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118
Query: 120 NRPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMICDSMSPII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFE 233
I+SRCL IR +P++ +I K+L + E + L + ++A +SN +LR ++L E
Sbjct: 179 APIKSRCLLIRCPTPSDNEISKILSDVVTNERINLETKDILQKIARESNGNLRISLLMLE 238
Query: 234 T 234
+
Sbjct: 239 S 239
>gi|340382661|ref|XP_003389837.1| PREDICTED: replication factor C subunit 3-like [Amphimedon
queenslandica]
Length = 195
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 142/239 (59%), Gaps = 47/239 (19%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWVDKYRP L+++ HQ+ A +LK V D PHLL YGP G+GKKT ++ +LR+++G
Sbjct: 3 LWVDKYRPTNLNKLHYHQEQAASLKDWVQSDDFPHLLIYGPSGAGKKTRMVCILRELYGA 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
G EK+++E+ +E L+ K N
Sbjct: 63 GVEKLRIEH-------------MEFIVLTH-----------------------KLFIINI 86
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P V+VL EVD+L+++AQH+LRRTME Y+ +CRLIL CNS+SK+ AI+SRC
Sbjct: 87 P----------VVVLTEVDRLTKDAQHALRRTMELYTGTCRLILVCNSTSKLIPAIKSRC 136
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS-LRRAILSFETCRVQQ 239
L +R+ +PT ++I VL+++ KE L +P A R+AEKS R+ LR+AIL E CRVQQ
Sbjct: 137 LAVRVPAPTIDEICSVLQYVCHKESLTIPDTLAKRIAEKSERNHLRKAILLCEACRVQQ 195
>gi|401626895|gb|EJS44813.1| rfc5p [Saccharomyces arboricola H-6]
Length = 354
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 157/240 (65%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+ + ++++ LK L + +D PH+L YGP G+GKKT MALL +FG
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHILLYGPNGTGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G ++K++ + + + A +R LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 SGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ CNS S +
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMICNSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
I+SRCL +R +P++ +I K+L + E + L + ++A +SN +LR ++L E+
Sbjct: 180 PIKSRCLLVRCPAPSDSEISKILSDVVTNERIHLETKDILQKIAYESNGNLRISLLMLES 239
>gi|45187570|ref|NP_983793.1| ADL303Cp [Ashbya gossypii ATCC 10895]
gi|44982308|gb|AAS51617.1| ADL303Cp [Ashbya gossypii ATCC 10895]
gi|374107005|gb|AEY95913.1| FADL303Cp [Ashbya gossypii FDAG1]
Length = 355
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 153/244 (62%), Gaps = 9/244 (3%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDK+RPK+L + + + L+ L + +D PH+L YGP GSGKKT M LL +FG
Sbjct: 3 LWVDKHRPKSLTSLSHTASLTKQLEALAGSAKDLPHILLYGPNGSGKKTRCMGLLASIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G K+K++ + + N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 AGVYKLKIDVRQF---VTPSNKKLELNVVSSPYHIEITPSDMGHNDRIVIQELLKEIAQM 119
Query: 121 RPIDTK-GKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + G G +K +++NE + L+R+AQ +LRRTMEKYS + R+I+ C+S S +
Sbjct: 120 EQVDFQSGSEGLARRYKSVIINEAESLTRDAQAALRRTMEKYSRNIRVIMLCDSLSSIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
I+SRC+ +R+ +P ++V ++E + +EG+ +AE ++ +LR A+L+ E+
Sbjct: 180 PIKSRCMLVRVPAPAPAEMVAIMERVCTQEGVTASEHKLYEIAEFADGNLRLALLTLESM 239
Query: 236 RVQQ 239
+Q
Sbjct: 240 CIQH 243
>gi|50286125|ref|XP_445491.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524796|emb|CAG58402.1| unnamed protein product [Candida glabrata]
Length = 355
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 151/240 (62%), Gaps = 10/240 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKL-VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDK+RPKTL + + D+ + L L + +D PHLL YGP GSGKKT MALL +FG
Sbjct: 3 LWVDKHRPKTLKTLSYNDDLTRFLSSLAMNPRDLPHLLIYGPNGSGKKTRCMALLESIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++K++ + + N LEL +SS H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 SQVYRLKIDVRRF---VTPSNRKLELNVVSSPYHLEITPSDMGNNDRVVIQELLKEVAQM 119
Query: 121 RPIDTK-GKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+D + G G FK +++NE + L+R+AQ +LRRTMEKYS + RLI+ C+S S +
Sbjct: 120 EQVDFQDGSSGIANRFKCVIINEANSLTRDAQAALRRTMEKYSKNIRLIMLCDSMSSIIS 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFET 234
IRSRCL IR +P + I K L+ +A +E + + ++A +SN ++R A+L E+
Sbjct: 180 PIRSRCLMIRSPAPQMKDITKTLKDVASEENVNIVDQVILDKVANESNGNMRLALLMLES 239
>gi|209882811|ref|XP_002142841.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209558447|gb|EEA08492.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 350
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 147/247 (59%), Gaps = 10/247 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV--TEQDCPHLLFYGPPGSGKKTLIMALLRQV 58
MLWVDKY+P L++++ H+ + L+K+ + + PHL+FYGP GSGKK I A+L +V
Sbjct: 1 MLWVDKYQPHRLNELLCHKQLNCLLEKIANGSNKTIPHLIFYGPSGSGKKARISAMLHEV 60
Query: 59 FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
FG +KVK + I+ + S++H+++S D G +DR V Q +IK+++
Sbjct: 61 FGDSVDKVKAD------IIKPEGINSDFVVCQSSHHMQISAPDLGTKDRVVTQYLIKQLS 114
Query: 119 KNRPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+T K+G ++V V+ E D LS EAQ LRRTMEKY+A+ R+IL C S +
Sbjct: 115 SQVGANTFFKKGPNYRVFVILESDVLSMEAQAGLRRTMEKYAANSRVILHCEQLSSIISP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+RSRCL IR+ P+ +IV VL IAK EGL + + + + S +LRRAIL ET
Sbjct: 175 LRSRCLCIRVPLPSHNEIVHVLSHIAKSEGLNVSNEYLIDITTASEGNLRRAILLLETAA 234
Query: 237 VQQLRFT 243
VQ +
Sbjct: 235 VQNFSLS 241
>gi|302804015|ref|XP_002983760.1| hypothetical protein SELMODRAFT_119010 [Selaginella moellendorffii]
gi|300148597|gb|EFJ15256.1| hypothetical protein SELMODRAFT_119010 [Selaginella moellendorffii]
Length = 260
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 156/244 (63%), Gaps = 19/244 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+K+RP++L +++ A +LK+L++ C HLLF GPPG GKK+LIMALLR FG
Sbjct: 1 LWVNKHRPESLSSFVINCRQAHDLKQLISAGHCHHLLFEGPPGCGKKSLIMALLRDAFGI 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM--AK 119
A W G++ + L SSA+HVEL+ G R V+ ++KEM A
Sbjct: 61 SA---------W---LGTK---VSLPITSSAHHVELNLLHVGVYLRPVLTTLLKEMKVAC 105
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCR-LILCCNSSSKVTEAIR 178
+ R +KVLVL++ DK+S EAQ +R M++YS C+ ++LCC+ SK+++++R
Sbjct: 106 TAYDNDSYIRSYKVLVLHDADKVSAEAQQHIRWLMDRYSDYCKFMLLCCSQPSKLSDSVR 165
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
RC+ + +++PT + +V+VL F+AK+E L L FA R+A K++++ R+A+LS E C+++
Sbjct: 166 LRCIVVDVHNPTVDDVVQVLYFVAKRENLDLQEHFALRIA-KASKNFRQAVLSLEACKLK 224
Query: 239 QLRF 242
Q F
Sbjct: 225 QYPF 228
>gi|444315932|ref|XP_004178623.1| hypothetical protein TBLA_0B02620 [Tetrapisispora blattae CBS 6284]
gi|387511663|emb|CCH59104.1| hypothetical protein TBLA_0B02620 [Tetrapisispora blattae CBS 6284]
Length = 366
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 154/247 (62%), Gaps = 17/247 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-EQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LWVDKYRPK+L+++ + D+ L+ L + +D PHLL YGP G GKKT M+LL+ +FG
Sbjct: 3 LWVDKYRPKSLNELSHNDDLTTLLQSLSSYHKDLPHLLLYGPNGVGKKTRCMSLLQSIFG 62
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++K++ + + + + LEL ++S H+E++PSD G DR V+QE++KE+A+
Sbjct: 63 SNVYRLKIDIRNFTTPSNRK---LELNVINSQYHIEITPSDMGNNDRIVIQELLKEIAQM 119
Query: 121 RPIDTKGKRG------------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168
+D + G FK +++NE D LSR+AQ +LRRTMEKYS + RLI+ N
Sbjct: 120 EQVDFQSSSGNGGAASTGLAHRFKCVIINEADCLSRDAQAALRRTMEKYSRNIRLIMISN 179
Query: 169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRR 227
S S + I+SRCL IR SP++E+ + +L+ I E + + S ++ ++SN ++R
Sbjct: 180 SLSPIISPIKSRCLLIRCPSPSDEEHLALLKKIVDAENVNVESDDILKKIVKESNNNIRT 239
Query: 228 AILSFET 234
++L E+
Sbjct: 240 SVLMLES 246
>gi|302817642|ref|XP_002990496.1| hypothetical protein SELMODRAFT_131813 [Selaginella moellendorffii]
gi|300141664|gb|EFJ08373.1| hypothetical protein SELMODRAFT_131813 [Selaginella moellendorffii]
Length = 260
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 156/244 (63%), Gaps = 19/244 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+K+RP++L +++ A +LK+L++ C HLLF GPPG GKK+LIMALLR FG
Sbjct: 1 LWVNKHRPESLSSFVINCRQAHDLKQLISAGHCHHLLFEGPPGCGKKSLIMALLRDAFGI 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM--AK 119
A W G++ + L SSA+HVEL+ G R V+ ++KEM A
Sbjct: 61 SA---------W---LGTK---VSLPIASSAHHVELNLLHVGVYLRPVLTTLLKEMKVAC 105
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCR-LILCCNSSSKVTEAIR 178
+ R +KVLVL++ D++S EAQ +R M++YS C+ ++LCC+ SK+++++R
Sbjct: 106 TAYDNDSYIRSYKVLVLHDADEVSAEAQQHIRWLMDRYSDYCKFMLLCCSQPSKLSDSVR 165
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
RC+ + +++PT + +V+VL F+AK+E L L FA R+A K++++ R+A+LS E C+++
Sbjct: 166 LRCIVVDVHNPTVDDVVQVLYFVAKRENLDLQEHFAWRIA-KASKNFRQAVLSLEACKLK 224
Query: 239 QLRF 242
Q F
Sbjct: 225 QYPF 228
>gi|294866376|ref|XP_002764685.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239864375|gb|EEQ97402.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 287
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 138/237 (58%), Gaps = 3/237 (1%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+D RP TLD++ H I Q L+ L D PHLLFYGP G GK T I LLR++FGP
Sbjct: 3 FLIDSERPTTLDELTYHDSITQQLRGLARRPDLPHLLFYGPTGGGKMTRIQCLLREIFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
KVK E +T K DA S L++ L S H+E++P++AG +D V+Q +IKEMA+
Sbjct: 63 AVTKVKHEFRTIK-DASSSRPMLDVQVLYSNYHLEVTPTEAGTRDVVVIQHLIKEMAQAP 121
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G F+V+V+N+ LSR AQ LRRTMEKY ++ +S + + +RSRC
Sbjct: 122 PLG--GDVPFRVVVVNDAHNLSRSAQAGLRRTMEKYVGVLKIFFHADSLASLIPPLRSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
++IR+ PT E + LE + K G+++ AT +A +S LR ++ + Q
Sbjct: 180 MSIRVPRPTTEVVKIELERVKAKMGVEMNPHLATIIATESRGDLRYGLMQLDAISAQ 236
>gi|156083977|ref|XP_001609472.1| replication factor C 38 kDa subunit [Babesia bovis T2Bo]
gi|154796723|gb|EDO05904.1| replication factor C 38 kDa subunit [Babesia bovis]
Length = 349
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 144/241 (59%), Gaps = 13/241 (5%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV--TEQDCPHLLFYGPPGSGKKTLIMALLRQV 58
MLW+DK+ PK LD++ H+D+ L KLV + + PHLLFYGP GSGKKT I+A LR V
Sbjct: 1 MLWIDKHCPKRLDELTSHRDVNALLTKLVEKSHGEIPHLLFYGPSGSGKKTRILATLRAV 60
Query: 59 FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
FGP +KVK E + +D S E+ S +H+++ SD G +DR +VQ++I+ ++
Sbjct: 61 FGPSIDKVKTEIIS-NVDTSS-----EVVVCQSDHHIQIPCSDLGSRDRVIVQDIIRTLS 114
Query: 119 KNRPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+ +G F+V + + D LS AQ +LRRTME Y + R+IL N S++
Sbjct: 115 ASPSASNYFMKGPSFRVFLFEDADALSLPAQAALRRTMETYIKNARMILHVNQLSRIMLP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATRLAEKSNRSLRRAILSFE 233
+RSRCL IR+ S T ++I +L I K E + Q R+A S R+LRRAIL+ E
Sbjct: 175 LRSRCLCIRVGSHTIDEITTILRSICKIENVASAQSSDEVLRRIATSSGRNLRRAILTLE 234
Query: 234 T 234
T
Sbjct: 235 T 235
>gi|123480785|ref|XP_001323411.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121906275|gb|EAY11188.1| hypothetical protein TVAG_498820 [Trichomonas vaginalis G3]
Length = 346
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 146/238 (61%), Gaps = 7/238 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW+D++RP LD + + + + LK + D PHLLF GPPGSGKKT ++A LR++F
Sbjct: 4 LWIDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVLAFLRKLFN- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
AE + + I+ G + I++++T SS H+E++P+DAG DR+V+ +K++A ++
Sbjct: 63 -AELTHLASGFRTIEEGDKKIEVQVT--SSDFHIEITPADAGMNDRHVISYFLKDVAASQ 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G KV+V+NE +LS+ AQ +LRRTMEKY+ SCR+IL +S S++ E +RSRC
Sbjct: 120 VV---GGFSIKVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRC 176
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
L IR I ++ +A KE ++ T L +S +LRRAI E +Q+
Sbjct: 177 LVIRTPRIPSADIATAVKEVASKENFEISDEQLTDLVNESIGNLRRAINLLEMLSMQK 234
>gi|359476885|ref|XP_003631905.1| PREDICTED: uncharacterized protein LOC100852980 [Vitis vinifera]
Length = 766
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 145/246 (58%), Gaps = 18/246 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
W DK+RP +L+ +H+ AQ LK+LV+ CPH+LF GP GSGKK L MALLR+++G
Sbjct: 422 FWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYG- 480
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ +W R + + + SSA+HVEL+ + + R+ + ++K++ N
Sbjct: 481 --------DASWN---EKRPMQVVVPLTSSAHHVELNVNLEPYA-RHALMAIVKQIRSNC 528
Query: 122 PI-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
I + K +KVLVL EVDK + Q+ ++ M+ Y+ +C+LI+CC V E+
Sbjct: 529 EITPEVSNVDFKADYKVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCEDDVDVLES 588
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+++RC I++ +P +I++VL IA+KE LP FA ++A KS + LR+AI++ E C+
Sbjct: 589 VKNRCKVIKLEAPVTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAIMALEACK 648
Query: 237 VQQLRF 242
F
Sbjct: 649 AHNYPF 654
>gi|297735132|emb|CBI17494.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 147/245 (60%), Gaps = 8/245 (3%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
W DK+RP +L+ +H+ AQ LK+LV+ CPH+LF GP GSGKK L MALLR+++G
Sbjct: 356 FWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYGD 415
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ + E +++ + R + + + SSA+HVEL+ + + R+ + ++K++ N
Sbjct: 416 ASWNISHELRSFHVQE-KRPMQVVVPLTSSAHHVELNVNLEPYA-RHALMAIVKQIRSN- 472
Query: 122 PIDTKGKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+ + G VLVL EVDK + Q+ ++ M+ Y+ +C+LI+CC V E++
Sbjct: 473 -CEITPEHGSILLISVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCEDDVDVLESV 531
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
++RC I++ +P +I++VL IA+KE LP FA ++A KS + LR+AI++ E C+
Sbjct: 532 KNRCKVIKLEAPVTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAIMALEACKA 591
Query: 238 QQLRF 242
F
Sbjct: 592 HNYPF 596
>gi|399217573|emb|CCF74460.1| unnamed protein product [Babesia microti strain RI]
Length = 346
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 140/239 (58%), Gaps = 11/239 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW+DKY P+T+ + H++I + +L D PHL+ YGP GSGKK IM LLR++FG
Sbjct: 1 MLWIDKYAPRTIAGLDCHREINEVFTQLCKSSDIPHLILYGPSGSGKKARIMVLLREIFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
A+ +KVE T +N + E+T S H + +D G +DR +VQ +I+ + +
Sbjct: 61 AKADHIKVETLT------DKNTNTEITVSQSQCHTNIMCNDLGTRDRVIVQNIIRSLCAS 114
Query: 121 RPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
+ +G F+V VL++ D LS AQ +LRRT+EK+ + R+ + S++ ++
Sbjct: 115 SFTSSFFSKGPTFRVFVLHDADFLSEAAQAALRRTLEKHIRNARVFMHVKELSRIMPPLK 174
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATRLAEKSNRSLRRAILSFET 234
SRCL IR+ P +E++V VL I E + Q + R+ + S+R+LRR+IL+ ET
Sbjct: 175 SRCLCIRLGLPRKEEVVAVLRNICTYENISTSQADNALLERICDASDRNLRRSILTLET 233
>gi|126644224|ref|XP_001388231.1| replication factor C subunit 5 [Cryptosporidium parvum Iowa II]
gi|126117304|gb|EAZ51404.1| replication factor C subunit 5, putative [Cryptosporidium parvum
Iowa II]
Length = 345
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 145/249 (58%), Gaps = 12/249 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQV 58
MLW+DKY+P+ L + ++++ L+K+ + + PHLLFYGP G GKK I ++L ++
Sbjct: 1 MLWIDKYQPRYLRDLKCNKELNSLLEKITSNSNGNIPHLLFYGPSGGGKKVRISSVLHEI 60
Query: 59 FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
FG +KVK + + E S +H+++S D G +D V Q +IK+++
Sbjct: 61 FGDSVDKVKADM------IKPEGTNSEFVLCQSPHHMQISAPDLGTKDGIVTQYLIKQLS 114
Query: 119 KNRPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
++ +G ++V + E D LS +AQ LRRTMEKYS + RLIL C S +
Sbjct: 115 SQMGANSFFSKGPNYRVFTILEADVLSLKAQAGLRRTMEKYSNNSRLILHCEQLSSIIPP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+RSRCL IR+ P+ E++++VL FI+ E LQ+P+ + ++ +S +LRRAIL ET
Sbjct: 175 LRSRCLCIRVPLPSPEEVLQVLRFISNSENLQVPNNYLEQIVTESECNLRRAILILETAH 234
Query: 237 VQQLRFTMP 245
Q F+ P
Sbjct: 235 TQS--FSNP 241
>gi|401408351|ref|XP_003883624.1| putative replication factor c [Neospora caninum Liverpool]
gi|325118041|emb|CBZ53592.1| putative replication factor c [Neospora caninum Liverpool]
Length = 403
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 142/258 (55%), Gaps = 21/258 (8%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDK+ P+ ++++ +H D+++ L K PHLLFYGP G+GKKT ++AL R++FG
Sbjct: 1 MLWVDKHSPREIEELSIHPDVSRLLLKQAASPSLPHLLFYGPTGAGKKTRVLALARRIFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G +KVKVE T R E T S++H+ LS + G +DR +VQ +IK++A++
Sbjct: 61 SGVDKVKVETFT------DRESGTEATVCRSSHHILLSCQEFGLKDRAIVQSIIKDIAES 114
Query: 121 RPID----------TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
+ FK+ + + D LS AQH+LRRT+E YS+ + +
Sbjct: 115 TTLSGVSSFFAAPKASNVPSFKICIFQDADLLSEGAQHALRRTLEIYSSRLKFVFLVERL 174
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATRLAEKSNRSLRR 227
+ + ++SRC +R+ P+ ++V L I +EGL P ++E+S R+LRR
Sbjct: 175 ERFSAPLKSRCFCVRVPLPSHREVVTYLRSICDREGLTPEMAPDALLQTISEQSGRNLRR 234
Query: 228 AILSFETCRVQQLRFTMP 245
A L+ E + FT P
Sbjct: 235 AGLALEC--IATHNFTAP 250
>gi|413923603|gb|AFW63535.1| hypothetical protein ZEAMMB73_411986 [Zea mays]
Length = 740
Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 143/243 (58%), Gaps = 2/243 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W DKYRP+ L+ H++ Q LK+ V+ + CPH++F GPPGSGK++L A+L ++FG
Sbjct: 382 LFWADKYRPQNLNGFTCHREQVQQLKQSVSAEFCPHIIFKGPPGSGKRSLCRAVLTEIFG 441
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA-K 119
+ V K+ GS ++ + + SS NHVEL RY + + EM+ K
Sbjct: 442 DSSLNVSHYLKSCN-GQGSISVPILVPVSSSNNHVELHMRFQSKNARYALMTLANEMSDK 500
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + ++ FKV+VL +VDK+S+ Q ++ ++ S +C++I+ C S + ++I+S
Sbjct: 501 CKITEPIVRKSFKVIVLYDVDKVSQNNQRLIKWIIDSSSDACKIIMTCQDESNLLDSIKS 560
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RC I I P+ ++V +L + ++KE LP+ FAT +A +S ++LR AIL+ E C+
Sbjct: 561 RCKIISIGVPSTREVVDILTYTSRKESFDLPTSFATTIANQSRKNLREAILALEACKANN 620
Query: 240 LRF 242
F
Sbjct: 621 YPF 623
>gi|449528029|ref|XP_004171009.1| PREDICTED: uncharacterized LOC101218071 [Cucumis sativus]
Length = 723
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 143/248 (57%), Gaps = 20/248 (8%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
W D++RP +L+ H+ AQ LK+LV++ PH+LF GP GSGK+ L+MALLR+++G
Sbjct: 377 FWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILFKGPRGSGKRVLMMALLREIYG- 435
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTL-SSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W R + L SSA+HVEL+ S +Y + + KE+
Sbjct: 436 --------DSCW----NERKLTQVFVPLTSSAHHVELNLSSES-NAKYALLGLAKEIGSE 482
Query: 121 RPIDTKG-----KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I+ + K FKV+VL +VDK + + QH LR M+ Y +C+++LCC S + E
Sbjct: 483 YSINVEARNVNPKAIFKVVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLCCEDDSGILE 542
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
++ SRC I+IN P +I+ VL IA+KE LP FA+++A K+ ++LR+AI++ E C
Sbjct: 543 SVISRCKVIKINPPVTHEIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLRKAIMALEAC 602
Query: 236 RVQQLRFT 243
+ F+
Sbjct: 603 KAHNYPFS 610
>gi|449451671|ref|XP_004143585.1| PREDICTED: uncharacterized protein LOC101218071 [Cucumis sativus]
Length = 713
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 143/248 (57%), Gaps = 20/248 (8%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
W D++RP +L+ H+ AQ LK+LV++ PH+LF GP GSGK+ L+MALLR+++G
Sbjct: 377 FWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILFKGPRGSGKRVLMMALLREIYG- 435
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTL-SSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W R + L SSA+HVEL+ S +Y + + KE+
Sbjct: 436 --------DSCW----NERKLTQVFVPLTSSAHHVELNLSSES-NAKYALLGLAKEIGSE 482
Query: 121 RPIDTKG-----KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I+ + K FKV+VL +VDK + + QH LR M+ Y +C+++LCC S + E
Sbjct: 483 YSINVEARNVNPKAIFKVVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLCCEDDSGILE 542
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
++ SRC I+IN P +I+ VL IA+KE LP FA+++A K+ ++LR+AI++ E C
Sbjct: 543 SVISRCKVIKINPPVTHEIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLRKAIMALEAC 602
Query: 236 RVQQLRFT 243
+ F+
Sbjct: 603 KAHNYPFS 610
>gi|388517395|gb|AFK46759.1| unknown [Lotus japonicus]
Length = 201
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/99 (79%), Positives = 88/99 (88%), Gaps = 4/99 (4%)
Query: 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213
MEKYSA CRLILCCNSSS+VTEAIRSRCLNIRIN+P+EEQIV+V+EFI KKEGLQ PSGF
Sbjct: 1 MEKYSAYCRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQFPSGF 60
Query: 214 ATRLAEKSNRSLRRAILSFETCRVQQLRF----TMPSVD 248
A R+AEKSNR+LRRAILSFETCRVQQ F T+P +D
Sbjct: 61 AARIAEKSNRNLRRAILSFETCRVQQYPFTNRQTIPPMD 99
>gi|294938321|ref|XP_002782103.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239893514|gb|EER13898.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 361
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 132/235 (56%), Gaps = 11/235 (4%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
+D RP TLD++ H I Q L+ L D PHLLFYGP G GK T I LLR++FGP
Sbjct: 16 IDSERPTTLDELTYHDSITQQLRGLARRPDLPHLLFYGPTGGGKMTRIQCLLREIFGPAV 75
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
KV V + +G R L S H+E++P++AG +D V+Q +IKEMA+ P+
Sbjct: 76 TKVVVVVAEEQ--SGGR-------VLYSNYHLEVTPTEAGTRDVVVIQHLIKEMAQAPPL 126
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
G F+V+V+N+ LSR AQ LRRTMEKY ++ +S + + +RSRC++
Sbjct: 127 G--GDVPFRVVVVNDAHNLSRSAQAGLRRTMEKYVGVLKVFFHADSLASLIPPLRSRCMS 184
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
IR+ PT E + LE + K G+++ AT +A +S LR ++ + Q
Sbjct: 185 IRVPRPTTEVVKVELERVEAKMGVEMNPHLATIIATESRGDLRYGLMQLDAISAQ 239
>gi|428673452|gb|EKX74365.1| replication factor C subunit 5, putative [Babesia equi]
Length = 351
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 139/240 (57%), Gaps = 14/240 (5%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV--TEQDCPHLLFYGPPGSGKKTLIMALLRQV 58
MLW+DK+ PK L ++ H+D+ + L KLV + + PH LFYGP G+GKKT I+A LR V
Sbjct: 1 MLWIDKHCPKHLHELTSHKDVNELLIKLVNKSHGELPHFLFYGPSGAGKKTRILATLRSV 60
Query: 59 FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
FG +KVK + ++K D+ E+ S +H+++ + G +DR ++Q+VI+ ++
Sbjct: 61 FGAKVDKVKTDVLSYK-DSN------EIIVCQSESHIQIPCPELGTRDRVIIQDVIRNLS 113
Query: 119 KNRPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+G ++V + + D LS EAQ +LRRTME Y + R+ L S++
Sbjct: 114 SAPSASNYFTKGPSYRVFLFEDADSLSHEAQAALRRTMETYIKNARMFLHVRQLSRIMPP 173
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATRLAEKSNRSLRRAILSFE 233
+RSRCL IRI S T ++I+ +L I E + Q +AE SNR+LRR+IL E
Sbjct: 174 LRSRCLCIRIRSHTPQEILDILREICNAENITPGQASDSMLLNIAESSNRNLRRSILMLE 233
>gi|84997984|ref|XP_953713.1| replication factor C subunit [Theileria annulata]
gi|65304710|emb|CAI73035.1| replication factor C subunit, putative [Theileria annulata]
Length = 351
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 145/257 (56%), Gaps = 19/257 (7%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV--TEQDCPHLLFYGPPGSGKKTLIMALLRQV 58
MLW+DK+ PK L+ H+D+++ L KLV + + PH LFYGP G+GKK+ I+A LR V
Sbjct: 1 MLWIDKHCPKNLNDFTSHKDLSELLLKLVNKSHGELPHFLFYGPSGAGKKSRILATLRSV 60
Query: 59 FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
FG +K+K + ++K + E+ S H+++ + G +DRY+VQ++I+ ++
Sbjct: 61 FGNKVDKIKTDVLSYKDTS-------EVVVCQSEVHIQIPCQELGTRDRYIVQDIIRSLS 113
Query: 119 KNRPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+G ++ + + D L++EAQ +LRRTME Y + R+ L S++
Sbjct: 114 SAPSASNFFSKGPSYRAFLFEDADTLTQEAQAALRRTMETYIKNARMFLHVRQLSRIMPP 173
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATRLAEKSNRSLRRAILSFE 233
+RSRCL IR+ S T ++IV++L I E + Q +AE S R+LRR+IL+ E
Sbjct: 174 LRSRCLCIRVRSHTNDEIVQILRKICNSEDITPSQASDQMLRNIAESSKRNLRRSILTLE 233
Query: 234 TC-----RVQQLRFTMP 245
T +Q F MP
Sbjct: 234 TIAMGGFTLQTKNFMMP 250
>gi|255561098|ref|XP_002521561.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223539239|gb|EEF40832.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 779
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 145/246 (58%), Gaps = 18/246 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
W DK++P +L I H+ AQ LK+LV + PH+L GP GSGK++L MALL ++FG
Sbjct: 432 FWADKHQPSSLSGFICHKQEAQLLKQLVFHNNIPHILLKGPSGSGKRSLAMALLCEIFG- 490
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
GA + + R + + + SSA+H+EL+ + ++ + +++E++ N
Sbjct: 491 GACRNE-----------ERAMQVAVPIASSAHHLELN-VNLEPNAKHALMSLVREISNNY 538
Query: 122 PI-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+ + K +KVLVL +VDK + + QH ++ M+ Y+ +C+LILCC + + E
Sbjct: 539 ALAPEVSNATFKPDYKVLVLYQVDKAAEDIQHLIKWIMDCYTDACKLILCCEDDADILEP 598
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+ +RC I+++SP +I++VL IA+KE +LP FA R+A KS + LR+AI++ E C+
Sbjct: 599 VTNRCRVIKVDSPVTHEIMEVLIQIARKEEFELPMNFAARIAAKSKQHLRKAIMTLEACK 658
Query: 237 VQQLRF 242
F
Sbjct: 659 EHNYPF 664
>gi|237833397|ref|XP_002365996.1| replication factor C, putative [Toxoplasma gondii ME49]
gi|211963660|gb|EEA98855.1| replication factor C, putative [Toxoplasma gondii ME49]
gi|221488458|gb|EEE26672.1| replication factor C, putative [Toxoplasma gondii GT1]
gi|221508964|gb|EEE34533.1| replication factor C, putative [Toxoplasma gondii VEG]
Length = 396
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 135/246 (54%), Gaps = 19/246 (7%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWVDK+ P+ ++++ +H +I++ L K PHLLFYGP G GKKT ++AL+R++FG
Sbjct: 1 MLWVDKHAPREIEELSIHPEISRLLLKQAASASLPHLLFYGPTGGGKKTRVLALVRRIFG 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+KV+VE T R E T S++H+ LS + G +DR +VQ +IK++A++
Sbjct: 61 DAVDKVRVETFT------DRESGTEATVCRSSHHILLSCQEFGVKDRAIVQSIIKDIAES 114
Query: 121 RPID----------TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
+ FK+ + + D LS AQH+LRRT+E YS+ + +
Sbjct: 115 TTLSGVSSFFAAPKASSVPPFKICIFQDADLLSESAQHALRRTLEIYSSRLKFVFLVERL 174
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQ---LPSGFATRLAEKSNRSLRR 227
+ + ++SRC +R+ P+ + L + KEGL P ++EKS R+LRR
Sbjct: 175 ERFSAPLKSRCFCVRVPLPSHRAVASFLRSLCDKEGLPPQVAPDALLQTISEKSARNLRR 234
Query: 228 AILSFE 233
A L+ E
Sbjct: 235 AGLALE 240
>gi|403221417|dbj|BAM39550.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 351
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 139/240 (57%), Gaps = 14/240 (5%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQV 58
MLW+DK+ P+ L H+D+ + L KLV++ + PH LFYGP GSGKK+ ++A LR V
Sbjct: 1 MLWIDKHCPRNLSDFSSHKDVNELLLKLVSKSHGELPHFLFYGPSGSGKKSRMLATLRDV 60
Query: 59 FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
FG +K+K + T+K D+ E+ S H+++ + G +DRY+VQ+VI+ ++
Sbjct: 61 FGTRVDKIKTDVLTYK-DSN------EVIVCQSEAHIQIPCPELGTRDRYIVQDVIRNLS 113
Query: 119 KNRPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+G ++V +L + D L++EAQ +LRRTME + R+ L S++
Sbjct: 114 SAPSASNYFSKGPSYRVFLLEDADTLTQEAQAALRRTMETCVKNARMFLHVRQLSRIMPP 173
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATRLAEKSNRSLRRAILSFE 233
+RSRCL +R+ S T +IV +L I E + Q +AE SNR+LRR+IL+ E
Sbjct: 174 LRSRCLCVRVRSHTNAEIVDILRGICNAEDITPSQASDSMLMNIAESSNRNLRRSILTLE 233
>gi|298713109|emb|CBJ33469.1| Viral replication factor C subunit [Ectocarpus siliculosus]
Length = 324
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 120/217 (55%), Gaps = 13/217 (5%)
Query: 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
+H DI L + D PHLLF+GP GSGK TL+ LL +++GPG +V E + ++
Sbjct: 1 MHPDIEHRLTSMSRHGDIPHLLFHGPRGSGKMTLVRHLLEKLYGPGVNRVTTEKRV--VE 58
Query: 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKR---GFKV 133
S +E+ S H+E+ PSDAG D YVVQ IKEMA N I K
Sbjct: 59 TASSKHTIEIDVRVSNYHIEMEPSDAGANDTYVVQHAIKEMANNGSIAAVFNNCGVTHKT 118
Query: 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
+VL LS++AQ LRRTMEK++ASCRL+L +S+V E +RSRC+ IR+ P+ E
Sbjct: 119 IVLRGSGNLSKQAQAGLRRTMEKFTASCRLVLVSTFASRVIEPLRSRCVLIRVPLPSAEN 178
Query: 194 IVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
+ +E K +++ E S RS+ RAI
Sbjct: 179 LAAAIEIDDK--------ALVSQIVESSGRSISRAIF 207
>gi|218191427|gb|EEC73854.1| hypothetical protein OsI_08618 [Oryza sativa Indica Group]
Length = 729
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 141/243 (58%), Gaps = 2/243 (0%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W DKYRP+TL H++ + LK+LV+ + CPH++F GPPGSGK +L A++ ++FG
Sbjct: 374 LFWADKYRPRTLGGFTCHREQIEQLKQLVSTEFCPHIIFKGPPGSGKSSLCRAVVTEIFG 433
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA-K 119
+ V K+ GS ++ + + SS +H+EL+ YV+ ++ E+ K
Sbjct: 434 DSSLNVSHYLKSCS-GQGSTSMPVLVPLSSSDHHMELNLRYYSKNAGYVLMDLANEITNK 492
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ D ++ FKV+VL +VDK+S Q ++ ++ S + ++++ C S + ++++S
Sbjct: 493 KKTTDPSVRKKFKVIVLYDVDKVSESNQRLIKWMIDSSSDTHKILMTCQDESHILDSMKS 552
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
RC I I P +IV +L +I+KKE LPS FA +A +S +++R AIL+ E C+
Sbjct: 553 RCKLICIGVPNTREIVDILTYISKKESFDLPSSFAATIASQSRQNMREAILALEACKANN 612
Query: 240 LRF 242
F
Sbjct: 613 YPF 615
>gi|13242657|ref|NP_077672.1| EsV-1-187 [Ectocarpus siliculosus virus 1]
gi|13177457|gb|AAK14601.1|AF204951_186 EsV-1-187 [Ectocarpus siliculosus virus 1]
Length = 324
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 122/217 (56%), Gaps = 13/217 (5%)
Query: 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
+H +I L + D PHLLF+GP GSGK TL+ LL++++GPG +V E + ++
Sbjct: 1 MHPEIEDRLTSMSRHGDIPHLLFHGPRGSGKMTLVRHLLKKLYGPGVHRVTTEKRV--VE 58
Query: 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG---FKV 133
S +E+ S H+E+ PSDAG D YVVQ IKEMA N I K K
Sbjct: 59 TASSKHTIEIDVRVSNYHIEMEPSDAGANDTYVVQHAIKEMANNGSIAAVFKNCDVRHKT 118
Query: 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
+VL LS++AQ LRRTMEK++ASCRL+L +S+V E +RSRC+ IR+ P+ E
Sbjct: 119 IVLRGAGNLSKQAQAGLRRTMEKFTASCRLVLVSTFASRVIEPLRSRCVLIRVPLPSAEN 178
Query: 194 IVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
+ +E K +++ + S RS+ RA+
Sbjct: 179 LAAAIEIDDK--------ALVSQIVQSSGRSISRAMF 207
>gi|429963225|gb|ELA42769.1| hypothetical protein VICG_00084 [Vittaforma corneae ATCC 50505]
Length = 351
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW++KY+PK+ ++ H+++ L K E P+++F+G G K+T++ AL+ ++G
Sbjct: 1 MLWIEKYKPKSFSEITTHKEVVSMLDKYTLET-IPNMIFHGQIGHNKRTILYALISHLYG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
K +++AGS + ++ L VE PS+ G++DRYVVQ +IKE+A+
Sbjct: 60 SYPSPT---TKNIEVEAGSLKVMVDY--LECNEMVEFCPSEYGYKDRYVVQSIIKEIARC 114
Query: 121 RPI---DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
RPI +R K+LV+++ + LS++AQ +LRRTME YS ++I+ C +SK+ E I
Sbjct: 115 RPILGLFGAKRRSVKILVIDQAEDLSKDAQAALRRTMEMYSGHFKIIMVCTETSKLIEPI 174
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
RSRC+ +RI +++ ++ IAK EG + + + S + +RA+ FE
Sbjct: 175 RSRCMMVRIRGFRNDEMFRICSNIAKIEGFGVDKDAIDSICKNSKGNGKRALCLFE 230
>gi|396082271|gb|AFN83881.1| DNA replication factor C small subunit [Encephalitozoon romaleae
SJ-2008]
Length = 354
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 146/237 (61%), Gaps = 10/237 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M+W++KYRPK+ D ++ + I+ LK T + PHL+ +G PG GKKT ++ L+ ++G
Sbjct: 1 MIWIEKYRPKSFDSIVGREKISSVLKS-YTLETIPHLILHGGPGHGKKTTLLCLVTHLYG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G+ ++K+ +T ++ +G++ I E++ + S +VE+SPS G D+ V+Q +IKEM +
Sbjct: 60 -GSPEMKI--RTVEVLSGAKKI--EVSYMESNEYVEISPSQYGHHDKAVIQSIIKEMGQT 114
Query: 121 RPI----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+PI + K +++ + ++L+ EAQ +LRRT+E YS+ R++L CN S++ E
Sbjct: 115 KPILSMLKSAKKAPIRLVAITSAEELTLEAQAALRRTIEMYSSVLRVVLVCNELSRLIEP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+RSRC +RI + E I+ + I++KE +P + ++S ++RRA+ E
Sbjct: 175 VRSRCFFLRIPGFSNEDIISNMCRISEKENYAIPKEKLEEICKESEGNMRRALCILE 231
>gi|255586016|ref|XP_002533677.1| Replication factor C subunit, putative [Ricinus communis]
gi|223526428|gb|EEF28707.1| Replication factor C subunit, putative [Ricinus communis]
Length = 661
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 143/239 (59%), Gaps = 15/239 (6%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W DKYRPKTL+ I +Q A ++ L+ +C H +F G PG GK+T+I A++++ +GP
Sbjct: 298 WADKYRPKTLEAFICNQSTAAKVQGLIKGIECNHFIFEGSPGVGKRTMIRAMIQEAYGPE 357
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ + E+K +++ G +E+ S+ H+E++ SD ++++V E+IKE
Sbjct: 358 TVQTREESKAFRL-RGESIGSIEVRIKVSSQHIEVNLSDMKGYEKHIVVELIKE------ 410
Query: 123 IDTKGKRGF-------KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
D K R + + ++L D+LS +A ++ +E+Y S + CC+ SK+ +
Sbjct: 411 TDDKKSRNYLPKHDSCRAIILYNADRLSADAVLYIKWLLERYQGSSKFFFCCSDVSKL-Q 469
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
AI+ C +++ P+ ++IVKVL+FIAK+EG++LP FA R+A +S +LR+AI S E
Sbjct: 470 AIKELCNLVQLFMPSNDEIVKVLKFIAKQEGIELPFQFAERIALESKNNLRQAIRSLEA 528
>gi|401827719|ref|XP_003888152.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
gi|392999352|gb|AFM99171.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
Length = 354
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 149/248 (60%), Gaps = 15/248 (6%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M+W++KYRPK+ D+V+ ++I+ LK T + PH++ +G G GKKT ++ L+ ++G
Sbjct: 1 MIWIEKYRPKSFDRVVGREEISSVLKS-YTLETIPHMILHGRSGCGKKTTLLCLVNHLYG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
G+ + KV +T ++ +G++ I E++ + S +VE+SPS G D+ V+Q +IKEM +
Sbjct: 60 -GSPETKV--RTVEVVSGTKRI--EVSYMESDEYVEISPSQYGHHDKAVIQSIIKEMGQT 114
Query: 121 RPI----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+PI K K++ + ++L+ EAQ +LRRT+E YS+ R++L CN S++ E
Sbjct: 115 KPILSMLGGAKKAPIKLIAITSAEELTLEAQAALRRTIEMYSSVLRVVLICNELSRLIEP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
IRSRC +RI S ++ I+ + I++KE +P + S ++RRA+ C
Sbjct: 175 IRSRCFFLRIPSFSDGDIMSNMCMISEKENYAVPKERLEEICRASEGNMRRAL-----CI 229
Query: 237 VQQLRFTM 244
++ L F M
Sbjct: 230 LELLCFNM 237
>gi|311977866|ref|YP_003986986.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82000158|sp|Q5UQE8.1|RFCS2_MIMIV RecName: Full=Putative replication factor C small subunit L478;
Short=RFC small subunit L478; AltName: Full=Clamp loader
small subunit L478
gi|55417094|gb|AAV50744.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|308204420|gb|ADO18221.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|351737631|gb|AEQ60666.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257305|gb|EJN40913.1| putative replication factor C [Acanthamoeba polyphaga
lentillevirus]
Length = 370
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 138/237 (58%), Gaps = 7/237 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M + +KYRPK + + D+ + LK L + +D PH++ GP GSGKKTL+ LL ++
Sbjct: 1 MFFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYD 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++ + + I+ S ++E+ L S H+ + P+ D+Y++QE+IK+ A +
Sbjct: 61 EDVNILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMH 115
Query: 121 RPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ D K KR FK +V++ ++ L+ +Q +LRRTME+Y+ +CR I+ CN+ SK+ + +RS
Sbjct: 116 KSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRS 175
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
RC + PT E I V+++IA E ++L + + N +L+ AI F C+
Sbjct: 176 RCRTFCVPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIW-FLNCK 231
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 128/233 (54%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD+++ +I + LKK V ++ PHLLF GPPG GK T + L R +FG
Sbjct: 5 WVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------ENWR-----------------ENFLELNASDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FK++ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDVPFKIIFLDESDALTPDAQNALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + +E I K L+ IA+KEGL+L + S +R+AI +T
Sbjct: 153 IFRFSPLKKEDIAKKLKEIAEKEGLKLTESGLEAIIYVSEGDMRKAINVLQTA 205
>gi|339061416|gb|AEJ34720.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
Length = 227
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 135/230 (58%), Gaps = 6/230 (2%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M + +KYRPK + + D+ + LK L + +D PH++ GP GSGKKTL+ LL ++
Sbjct: 1 MFFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYD 60
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++ + + I+ S ++E+ L S H+ + P+ D+Y++QE+IK+ A +
Sbjct: 61 EDVNILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMH 115
Query: 121 RPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ D K KR FK +V++ ++ L+ +Q +LRRTME+Y+ +CR I+ CN+ SK+ + +RS
Sbjct: 116 KSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRS 175
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC + PT E I V+++IA E ++L + + N +L+ AI
Sbjct: 176 RCRTFCVPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAI 225
>gi|300707136|ref|XP_002995789.1| hypothetical protein NCER_101227 [Nosema ceranae BRL01]
gi|239605004|gb|EEQ82118.1| hypothetical protein NCER_101227 [Nosema ceranae BRL01]
Length = 352
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 140/234 (59%), Gaps = 12/234 (5%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW++KY+P+ + + H +I L+K + PHL+F+G GSGKK + L++ +FG
Sbjct: 1 MLWLEKYKPRDFNSMTDHTEIISILQKY-NIHNIPHLIFHGKSGSGKKLIAYNLIKHLFG 59
Query: 61 PGAEKVKVEN-KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
++ V N +T ++ AGSR I E+ L + +E+SPSD FQD+ ++Q +IKEMA+
Sbjct: 60 ----QISVPNVRTSEVKAGSRMI--EVNFLEANEFIEISPSDYNFQDKVIIQSIIKEMAQ 113
Query: 120 NRPI----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+RP+ TK K ++++ LS EAQ +LRRT+E YS R+IL C+ SK+ E
Sbjct: 114 SRPVMSFFSTKKTPSIKFVIISAAHDLSHEAQAALRRTIEVYSECFRIILICSQLSKIIE 173
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
IRSRC+ +RI ++I ++ I E + + ++ + S+ ++RRA+
Sbjct: 174 PIRSRCVFVRIRGFKPQEIKNHIKNIVTAENININEQNIEQIIKISDGNMRRAL 227
>gi|299472909|emb|CBN80478.1| RFC small subunit [Ectocarpus siliculosus]
Length = 324
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 122/217 (56%), Gaps = 13/217 (5%)
Query: 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
+H +I L + D PHLLF+GP GSGK TL+ LL +++GPG +V E + ++
Sbjct: 1 MHPEIEDRLTCMSRHGDIPHLLFHGPRGSGKMTLVRHLLEKLYGPGVNRVTAEKRV--VE 58
Query: 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG---FKV 133
S +E+ S H+E+ PSDAG D YVVQ IKEMA N I K K
Sbjct: 59 TASSKHTIEIDVRVSNYHIEMEPSDAGANDTYVVQHAIKEMANNGSIAAVFKNCDVRHKT 118
Query: 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
+VL LS++AQ LRRTMEK++ASCRL+L +S+V E +RSRC+ IR+ P+ E
Sbjct: 119 IVLRGAGNLSKQAQAGLRRTMEKFTASCRLVLVSAFASRVIEPLRSRCVLIRVPLPSAEN 178
Query: 194 IVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
+ +E E L +++ E S RS+ RA+
Sbjct: 179 LAAAIEI--DDETL------VSQIVESSGRSISRAMF 207
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 133/234 (56%), Gaps = 32/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD ++ +I + LK V ++ PHLLF GPPG GK +++++++FG
Sbjct: 7 IWIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+TW RN N +EL+ SD D +++ +K+ A+
Sbjct: 66 ---------ETW------RN-----------NFIELNASDERGID--IIRHKVKDFARMA 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G+ FKV+ L+E D L+ +AQ +LRRTME+YSA+ R IL CN SSK+ E I+SRC
Sbjct: 98 PL---GEADFKVIFLDEADALTNDAQSALRRTMERYSATTRFILSCNYSSKIIEPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E + K ++FIA +EGL++ G + + + +R+AI + +
Sbjct: 155 AVYRFKPLSPEAVTKRIKFIASEEGLRVSDGGLSAIEYVAGGDMRKAINALQAA 208
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 124/232 (53%), Gaps = 32/232 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP TL +V+ + L V E+ PHLLF GPPG+GK T +AL R++FG
Sbjct: 4 IWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N EL+ SD D VV+ IKE A+
Sbjct: 63 ---------EHWQ-----------------HNLHELNASDERGID--VVRGKIKEFARTA 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G GFK++ L+E D L+ AQ +LRRTMEKYS +CR +L CN SSK+ E I+SRC
Sbjct: 95 PI---GGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRC 151
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
R E + + L+FIA +E L++ LA + LRRAI S +
Sbjct: 152 AVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQ 203
>gi|19074687|ref|NP_586193.1| DNA REPLICATION FACTOR C 38kDa SUBUNIT [Encephalitozoon cuniculi
GB-M1]
gi|19069329|emb|CAD25797.1| DNA REPLICATION FACTOR C 38kDa SUBUNIT [Encephalitozoon cuniculi
GB-M1]
Length = 354
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 142/237 (59%), Gaps = 10/237 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M+W++KYRP++ D++I ++ A L K T + PH++ +G G GKKT+++ L+ ++G
Sbjct: 1 MIWIEKYRPRSFDEMIGREE-ASGLLKSYTLETIPHMIVHGRSGHGKKTVLLCLVNHLYG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
E ++ +T ++ +G++ I E++ + S +VE+SPS G+ DR V+Q +IKEM +
Sbjct: 60 SIPE---MKIRTTEVLSGAKKI--EVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQT 114
Query: 121 RPIDTKGKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+PI + R K++V+ ++L+ EAQ +LRRT+E YS R++L CN S++ E
Sbjct: 115 KPILSMLARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
IRSRC +RI ++E + + I +KE +P + +S +RRA+ E
Sbjct: 175 IRSRCFFLRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLE 231
>gi|449330012|gb|AGE96278.1| DNA replication factor c 38kDa subunit [Encephalitozoon cuniculi]
Length = 354
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 142/237 (59%), Gaps = 10/237 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M+W++KYRP++ D++I ++ A L K T + PH++ +G G GKKT+++ L+ ++G
Sbjct: 1 MIWIEKYRPRSFDEMIGREE-ASGLLKSYTLETIPHMIVHGRSGHGKKTVLLCLVNHLYG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
E ++ +T ++ +G++ I E++ + S +VE+SPS G+ DR V+Q +IKEM +
Sbjct: 60 SIPE---MKIRTTEVLSGAKKI--EVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQT 114
Query: 121 RPIDTKGKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+PI + R K++V+ ++L+ EAQ +LRRT+E YS R++L CN S++ E
Sbjct: 115 KPILSMLARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
IRSRC +RI ++E + + I +KE +P + +S +RRA+ E
Sbjct: 175 IRSRCFFLRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLE 231
>gi|303391058|ref|XP_003073759.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303302907|gb|ADM12399.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 354
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 141/237 (59%), Gaps = 10/237 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M+W++KYRP + D+V V +D +L K T + PH++ +G G GKKT ++ L+ ++G
Sbjct: 1 MIWIEKYRPTSFDKV-VGRDKISSLLKSYTLETIPHMILHGKSGHGKKTTLLCLINHLYG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+E + +T ++ +G++ I E++ + S +VE+SPS G D+ V+Q +IKEM +
Sbjct: 60 GNSEP---KIRTVEVLSGTKKI--EVSYMESDEYVEISPSQYGHHDKAVIQNIIKEMGQT 114
Query: 121 RPIDTKGKRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+PI + R K++V+ ++LS EAQ +LRRT+E YS R++L CN S++ E
Sbjct: 115 KPILSMLSRAKRTPIKLIVITSAEELSLEAQAALRRTIEMYSNVLRVVLMCNELSRLIEP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
IRSRC +RI ++E I+ + I +KE +P + +S ++RRA+ E
Sbjct: 175 IRSRCFFLRIPGFSDEDIMSNMRRILEKENYTVPEETLEEICRESEGNMRRALCILE 231
>gi|357483535|ref|XP_003612054.1| Replication factor C subunit [Medicago truncatula]
gi|355513389|gb|AES95012.1| Replication factor C subunit [Medicago truncatula]
Length = 733
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 140/247 (56%), Gaps = 18/247 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW DK++P +LD I ++ AQ LK+LV++ CPH+L GP GSGK+ L MA LR+++G
Sbjct: 413 LWADKHKPASLDGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREIYGD 472
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K R + + + SS++H+E++ ++ +Y + +IKE++
Sbjct: 473 ACCNDK------------RTMKVSVPITSSSHHMEVN-VNSEPNAKYALMGLIKEISNIY 519
Query: 122 PI-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
I + K +KV+++ +V+K + QH ++ +++YS C+L+LCC +
Sbjct: 520 AITPEVSNVNFKSDYKVIIIYDVEKAAENIQHLIKWIIDRYSDICKLVLCCEDDENIIAQ 579
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+++R I +++P +I++VL IA KE + L FA ++A KS ++LR AIL+ E CR
Sbjct: 580 VKNRFKVINVDAPQTHEIIEVLTQIANKEEMDLSMNFAMKIATKSKQNLREAILALEACR 639
Query: 237 VQQLRFT 243
F+
Sbjct: 640 AHNYPFS 646
>gi|414867860|tpg|DAA46417.1| TPA: hypothetical protein ZEAMMB73_190155 [Zea mays]
Length = 638
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 139/234 (59%), Gaps = 5/234 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W DKYRP L++ I ++ +A L +LV C H +F GPP GK+++++AL+R FGP
Sbjct: 252 VWADKYRPNVLNEFICNKTVAAELYQLVVAHQCRHFIFEGPPAVGKRSMVLALIRDAFGP 311
Query: 62 GAEKVKVENKTWKIDAGSR-NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
K++ + K +++ R +ID+ + T S +HVE+S +D ++Y++ ++ E +
Sbjct: 312 HDLKIEEQTKRFELKGEIRKHIDVRVKT--SEHHVEVSLADLHGYEKYIITTLLSESIPS 369
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P +V+V+++ DKLS + QH + + +Y+ ++I CC+ +S + EAI+
Sbjct: 370 -PSSVCDHTNCRVIVIHDADKLSFDLQHYIGWFLGRYAGCNKIIFCCSDASNL-EAIKHL 427
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
C + + P+ ++I+ VLE+IA +E + LP A R+ +N +LR+ I SFE
Sbjct: 428 CKVVTLQPPSFDEIINVLEYIATQESIDLPRDLARRITVGANNNLRQTIRSFEA 481
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD ++ + I + LK V PHLLF GPPG GK T +AL R++FG
Sbjct: 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SD + V++E +KE A+ +P
Sbjct: 73 --------ENWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC
Sbjct: 106 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E I K L +IA+ EGL+L + + +RRAI
Sbjct: 163 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 209
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 30/228 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+ LD+++ H +I L++L+ E+ PHLLFYGPPG+GK T I+A R++FG
Sbjct: 18 IWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAILACAREMFG- 76
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A + + LEL + D G VV+E IK A R
Sbjct: 77 ---------------AQFKTMVLELN----------ASDDRGID---VVREQIKTFASTR 108
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I K G K+++L+E D ++ AQ +LRR MEKY+++ R L CN ++K+ AI+SRC
Sbjct: 109 HIYAL-KAGIKLVILDEADAMTSAAQAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRC 167
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R Q+++ LE+IA +EG+ + LA + +RRAI
Sbjct: 168 TRFRFQPVPVAQMIQRLEYIADREGVPVDRAAFDALARIAQGDMRRAI 215
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 127/242 (52%), Gaps = 32/242 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRPKTLD+V+ +I Q LK V +++ PHLLF GPPG+GK +AL R +FG
Sbjct: 5 IWVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFG- 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +E++ SD D VV+ IKE A+
Sbjct: 64 ---------EVWR-----------------ENFIEMNASDERGID--VVRHKIKEFARTA 95
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME YS CR IL CN S++ E I+SRC
Sbjct: 96 PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKVCRFILSCNYVSRIIEPIQSRC 152
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
+ +E + K L+ IA+ EGL++ L S R+AI + + R
Sbjct: 153 AVFKFKPVPKEAMKKRLKEIAENEGLEIDDEALEVLIYISGGDFRKAINALQGAAALDKR 212
Query: 242 FT 243
T
Sbjct: 213 IT 214
>gi|432094499|gb|ELK26061.1| Replication factor C subunit 3 [Myotis davidii]
Length = 425
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
Query: 126 KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185
KG F +++L EVDKL+R+AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRCL IR
Sbjct: 193 KGYNEFYMVLLTEVDKLTRDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIR 252
Query: 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFT-- 243
+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQ FT
Sbjct: 253 VPAPSIEDICHVLSTVCKKEGLNLPSQLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 312
Query: 244 --MPSVD 248
+P D
Sbjct: 313 QEIPETD 319
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Query: 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92
D PHLL YGP G+GKKT IM +LR+++G G EK+++E++T + + +E++T++S
Sbjct: 32 DFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKK---IEISTIASN 88
Query: 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFK 132
H+E++PSDAG DR V+QE++K +A+++ ++T +R FK
Sbjct: 89 YHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFK 128
>gi|402466719|gb|EJW02155.1| hypothetical protein EDEG_03399 [Edhazardia aedis USNM 41457]
Length = 354
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 136/233 (58%), Gaps = 10/233 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWV+KYRPK+ D+ H ++ + LK + + PHLL +G PG GKKTLI + +
Sbjct: 1 MLWVEKYRPKSFDETKYHTNLVEILKSY-SLKSVPHLLVHGGPGHGKKTLIQNFINNIH- 58
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++K K KI S I E++ L S +E++P D G+QD+ V+Q +IK +A+
Sbjct: 59 --QREIKTSVKLSKIQGASSEI--EISYLESEELIEITPGDYGYQDKLVIQGLIKSLAQT 114
Query: 121 RPIDT----KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+PI K+ + +V+N+ D+LS++AQ +LRRT+E+YS + RLI+ C + + E
Sbjct: 115 KPIIQMMMKDSKKDIRFIVINDADELSKDAQAALRRTVERYSTNFRLIMICEEMNTIIEP 174
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+RSRCL IR+ +E +I L+ I +E + + + + S+R+A+
Sbjct: 175 LRSRCLLIRVPGFSELEIEDFLKDILIREQSTIDHKTMLDIIKAARGSMRKAL 227
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD ++ + I + LK PHLLF GPPG+GK + +AL R++FG
Sbjct: 18 WVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELFG-- 75
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SD + V++E +KE A+ +P
Sbjct: 76 --------ENWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 108
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FK++ L+E D L+++AQ +LRRTME +S + R IL CN SSK+ E I+SRC
Sbjct: 109 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCA 165
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E I K + +IA++EGL+L + + LRRAI
Sbjct: 166 IFRFRPLNDEDIAKRIRYIAEQEGLELTEEGLQAILYVAEGDLRRAI 212
>gi|224094813|ref|XP_002310247.1| predicted protein [Populus trichocarpa]
gi|222853150|gb|EEE90697.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 139/247 (56%), Gaps = 8/247 (3%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
W DK++P +L+ H+ AQ L +LV+ PH+L GP GSGKK L MAL+ +FG
Sbjct: 558 FWADKHQPGSLNGFTCHKHEAQILGQLVSHDSIPHILLKGPSGSGKKALAMALIGDIFGD 617
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ + ++ G+ + + +T SSA+H E++ + + + ++KE+
Sbjct: 618 ACWHKTHDLRYFQEQRGAAQVVVPIT--SSAHHAEIN-VNLEPNAKTALMGLVKEIRNTY 674
Query: 122 PI-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
I + K +KVLVL EVDK Q ++ M+ Y+ +C+LILCC S + E
Sbjct: 675 AITPDFSNVNFKPDYKVLVLYEVDKAPENIQPLMKWIMDCYTDACKLILCCEDDSDILET 734
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+++RC +++++P +I++VL IA+KE LP FA ++A KS ++LR+AI++ E C+
Sbjct: 735 VKNRCKVLKVDAPVTHEIMEVLIQIARKEEFDLPMNFAAKIAAKSKQNLRKAIMALEACK 794
Query: 237 VQQLRFT 243
F+
Sbjct: 795 AHNYPFS 801
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 126/236 (53%), Gaps = 32/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRPK L +V+ QD+ + L+ V + PHLLF G G GK T +AL R++FG
Sbjct: 7 IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
TW + N EL+ SD D VV+ IK+ A+
Sbjct: 66 ---------DTWNM-----------------NFRELNASDERGID--VVRNQIKQFARTA 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FK+L L+E D L+++AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 PL---GDATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T+E I + + IAKKEG+ + G + S +R+AI + + +
Sbjct: 155 AIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAI 210
>gi|384484069|gb|EIE76249.1| hypothetical protein RO3G_00953 [Rhizopus delemar RA 99-880]
Length = 160
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 106/156 (67%)
Query: 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS 143
+ + +SS H+EL+PSD G DR +VQ+VIK +A+ + ID + FK++V+++ D+L+
Sbjct: 1 MNFSVVSSNFHMELNPSDLGMYDRVIVQDVIKGIAQTQQIDANARHQFKIVVIDKADELT 60
Query: 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203
REAQ +LRRTMEKY++S RLILCCN+ SK+ +RSRCL IR+ P E+ V L +A
Sbjct: 61 REAQAALRRTMEKYTSSMRLILCCNTLSKIIPPVRSRCLLIRVPRPEIEETVGALLNVAS 120
Query: 204 KEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
KE QL A +AE S R++R ++L+ ET Q+
Sbjct: 121 KENFQLSKQLAADIAEHSERNMRASLLALETTATQR 156
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ L+ ++ + I + LK V PHLLF GPPG GK T +AL R++FG
Sbjct: 15 WVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SD + V++E +KE A+ +P
Sbjct: 73 --------EHWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FK++ L+E D L+++AQ +LRRTME +S + R IL CN SSK+ E I+SRC
Sbjct: 106 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRCA 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + I K +++IA+ EGL+L L + LRRAI
Sbjct: 163 IFRFRPLNDNDIAKRIKYIAENEGLELTEDGLQALLYVAEGDLRRAI 209
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 126/227 (55%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD ++ + I + LK V PHLLF GPPG+GK T +AL R++FG
Sbjct: 15 WVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SD + V++E +KE A+ +P
Sbjct: 73 --------ENWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FK++ L+E D L+++AQ +LRRTME +S + R IL N SS++ E I+SRC
Sbjct: 106 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSANYSSRIIEPIQSRCA 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R ++E + K L++IA++EGL+L + + LRRAI
Sbjct: 163 IFRFRPLSDEDVAKRLKYIAEQEGLELTEEGLQAILYVAEGDLRRAI 209
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+TLD+V+ ++ Q LK V ++ PHLLF GPPG+GK +AL R +FG
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +E++ SD D VV+ IKE A+
Sbjct: 65 ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN S++ E I+SRC
Sbjct: 97 PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E + K L I +KEG+++ L S R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+TLD+V+ ++ Q LK V ++ PHLLF GPPG+GK +AL R +FG
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +E++ SD D VV+ IKE A+
Sbjct: 65 ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN S++ E I+SRC
Sbjct: 97 PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E + K L I +KEG+++ L S R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 123/234 (52%), Gaps = 32/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRP+ L+ VI HQ I + L V + PHLLF GPPG GK +AL R+++G
Sbjct: 6 IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYG- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+TW +N +EL+ SD D VV+ IK A+
Sbjct: 65 ---------ETWH-----------------SNFIELNASDERGID--VVRNNIKNFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G+ FK++ L+E D L+ +AQ +LRRTME+Y+A+CR I+ CN SSK+ E I+SRC
Sbjct: 97 PL---GEAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R I + IAK EGL++ L + +RRAI + ++
Sbjct: 154 AVYRFGPLNATDITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSA 207
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 120/227 (52%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD ++ I + LK V PHLLF GPPG GK T + L R++FG
Sbjct: 15 WVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELFG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SD + V++E +KE A+ +P
Sbjct: 73 --------EHWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FK++ L+E D L+++AQ +LRR ME +S + R IL CN SSK+ E I+SRC
Sbjct: 106 I---GGASFKIIFLDEADALTQDAQQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCA 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E I K + FIA+ EGL+L L + LRRAI
Sbjct: 163 IFRFRPLKDEDIAKRIRFIAENEGLELTEEGLQALLYIAEGDLRRAI 209
>gi|221055946|ref|XP_002259111.1| replication factor c subunit 5 [Plasmodium knowlesi strain H]
gi|193809182|emb|CAQ39884.1| replication factor c subunit 5, putative [Plasmodium knowlesi
strain H]
Length = 349
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 137/237 (57%), Gaps = 11/237 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KY P++LD++ +H+DI Q LKKL +D PH++FYG PG GK T I L++++F
Sbjct: 1 MWLEKYAPQSLDELKIHKDITQRLKKLSAHKDLPHIIFYGAPGGGKSTRIDCLIKEIF-- 58
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+ + +A ++ + + + S H+EL + G +D+ +VQ VIKE+ +
Sbjct: 59 KEEKI-IRRPECLTNAENK---ISINVVQSNYHLELQCFELGIKDKVIVQNVIKELCSYK 114
Query: 122 PIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + +++ V + + LS AQ LRRT+E Y + R+IL SK+ E ++S
Sbjct: 115 SSASFFSKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKS 174
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLP---SGFATRLAEKSNRSLRRAILSFE 233
RC+ IR+ PTEE+I VL I++ E + P F L K R+LR+ I++ E
Sbjct: 175 RCICIRVPLPTEEEIFSVLNDISESEHVPEPFCSVDFFKTLINKHGRNLRKCIMALE 231
>gi|356540777|ref|XP_003538861.1| PREDICTED: uncharacterized protein LOC100795321 [Glycine max]
Length = 731
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 141/247 (57%), Gaps = 18/247 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
W DK++P +L+ I ++ AQ LK+LV++ CPH+L GP GSGK+ L MA+LR+++G
Sbjct: 387 FWADKHQPASLNGFICNKHEAQLLKELVSQGSCPHILLLGPSGSGKRELAMAILREIYGD 446
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
D + + + +T SS++H+EL ++ +Y + +IKE++
Sbjct: 447 ACCN----------DQRLKKVSVPIT--SSSHHMELD-VNSEPNAKYALMGLIKEISNIY 493
Query: 122 PI-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
I + K FKV+VL +V K QH ++ +++YS C+L+LCC + + E
Sbjct: 494 AIAPEVSNINFKSDFKVIVLYDVHKAVDNIQHIIKWIIDRYSDICKLVLCCEDDADLIEP 553
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+++R I++++P +I++VL IAK E + L FA ++A KS ++LR+AI++ E C
Sbjct: 554 VKNRFKVIQVDAPQNHEIIEVLIQIAKNEEIDLSVNFAAKIATKSKQNLRKAIMALEACN 613
Query: 237 VQQLRFT 243
F+
Sbjct: 614 AHNYPFS 620
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 33/213 (15%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP +LD V+ ++I + LK V ++ PHLLF GPPG GK ++++R++FG
Sbjct: 50 IWIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFG- 108
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV+ +K+ A+
Sbjct: 109 ---------EEWR-----------------GNFIELNASDERGID--VVRHKVKDFARIA 140
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FKV+ L+E D L+ +AQ +LRRTME+YS+ CR +L CN SSK+ E I+SRC
Sbjct: 141 PL---GNAEFKVIFLDEADALTNDAQSALRRTMERYSSICRFVLSCNYSSKIIEPIQSRC 197
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGF 213
R S +EE + + ++ IA+ EG+++ P G
Sbjct: 198 AVYRFRSLSEEAVSERMKTIAEAEGVKVTPEGM 230
>gi|356495392|ref|XP_003516562.1| PREDICTED: uncharacterized protein LOC100817775 [Glycine max]
Length = 718
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 20/248 (8%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
W DK+ P +L+ I ++ AQ LK+LV++ CPH+L GP GSGK+ L MALLR+++G
Sbjct: 374 FWADKHEPASLNGFICNRQEAQLLKELVSQGSCPHILLQGPSGSGKRELAMALLREIYGD 433
Query: 62 GA-EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+++ + I + S +++L++ + S+A +Y + +IKE++
Sbjct: 434 ACCNDQRLKKVSVPITSSSHHMELDVNSESNA--------------KYALMGLIKEISNI 479
Query: 121 RPI-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ + K FKV+VL +V K +H ++ +++YS C+L+LCC + + E
Sbjct: 480 YAVAPEVSNINFKSDFKVIVLYDVHKAVDNIRHIIKWIIDRYSDICKLVLCCEDDADIIE 539
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+++R I++++P +I++VL IAK E + L FA ++A KS ++LR+AI++ E C
Sbjct: 540 HVKNRFKVIQVDAPQNHEIIEVLIQIAKNEEIDLSMNFAAKIATKSKQNLRKAIMALEAC 599
Query: 236 RVQQLRFT 243
+ F+
Sbjct: 600 KAHNYPFS 607
>gi|299117064|emb|CBN73835.1| EsV-1-187 [Ectocarpus siliculosus]
Length = 270
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 13/217 (5%)
Query: 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
+H ++ L + D PHLL +G GS K TL+ LL +++GPG +V E + ++
Sbjct: 1 MHPEVEDRLTSMSRHGDIPHLLLHGLRGSDKMTLVRHLLEKLYGPGVNRVTAEKRV--VE 58
Query: 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKR---GFKV 133
S +E+ S H+E+ PSDAG D YVVQ IKEMA N I K K
Sbjct: 59 TASSKHTIEIDVRVSNYHIEMEPSDAGVNDTYVVQHAIKEMANNGSIAAVSKNCDATHKT 118
Query: 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
+VL LS++AQ LRRTMEK++ASCRL+L +S+V E +RSRC+ IR+ P+ E
Sbjct: 119 IVLRGAGDLSKQAQAGLRRTMEKFTASCRLVLVSTFASRVAEPLRSRCVLIRVPLPSAEN 178
Query: 194 IVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
+ + K LQ + E S RS+ RA+
Sbjct: 179 LAAAIGIDDKALVLQ--------IVESSGRSISRAMF 207
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L +V+ + + LK V E PHLLF GP G GK T +AL R++FG
Sbjct: 4 IWIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N EL+ SD D VV+ IKE A+
Sbjct: 63 ---------ELWQ-----------------HNLHELNASDERGID--VVRGKIKEFARTA 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G++GFK++ L+E D L+ AQ +LRRTMEKYS +CR ++ CN SSK+ + I+SRC
Sbjct: 95 PL---GEKGFKIIFLDEADALTGAAQAALRRTMEKYSRTCRFVMSCNYSSKIIDPIQSRC 151
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E + K L+F+A KE +++ L + LRRAI
Sbjct: 152 AVFRFRPIKAEDLEKYLKFVASKENVKVTKEAFESLTYLAQGDLRRAI 199
>gi|357147528|ref|XP_003574379.1| PREDICTED: probable replication factor C subunit 3-like
[Brachypodium distachyon]
Length = 565
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 143/236 (60%), Gaps = 9/236 (3%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W D YRP L + I ++ +A L +LVT + C H +F G GKK++++ALLR FGP
Sbjct: 183 VWADMYRPSVLGEFICNKAVADELHRLVTARQCNHFIFEGMQAVGKKSMVLALLRDAFGP 242
Query: 62 GAEKVKVENKTWKIDAG---SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
+ +K+E + +I+ +++ID+++ SS +HVE++ +D ++ V+ ++ E
Sbjct: 243 --DDLKIEERPKRIELKGEIAKHIDIKIK--SSDHHVEVNLADLHGYEKQVITTLLNESI 298
Query: 119 KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
P +V+V+++ D++S + QH + + +Y ++I CC++SS + EA++
Sbjct: 299 PP-PDSICDHTNCRVIVVHDADRISSDLQHYIGWFLGRYVGCSKIIFCCSNSSNL-EAVK 356
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
C I + P+ ++I+KVLEFIA KEG+ LP A+R+A ++ +LR+AI SFE
Sbjct: 357 HLCKVITLLPPSFDEIIKVLEFIATKEGIYLPREIASRIATSASTNLRQAIRSFEA 412
>gi|70952462|ref|XP_745397.1| replication factor C subunit 5 [Plasmodium chabaudi chabaudi]
gi|56525708|emb|CAH78901.1| replication factor C subunit 5, putative [Plasmodium chabaudi
chabaudi]
Length = 348
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 133/236 (56%), Gaps = 10/236 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KY P++LD++ +H+DI LKKL D PH++FYG PG GK T I L++++F
Sbjct: 1 MWLEKYAPRSLDELNIHKDITARLKKLSAHNDLPHIIFYGAPGGGKSTRIDCLIKEIFKD 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA--K 119
+ EN T +A S+ + + + S H+EL + G +D+ +VQ +IKE+ K
Sbjct: 61 EKIIRRPENIT---NAESK---ININVIQSNYHLELQCFELGTKDKIIVQSIIKELCSYK 114
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ K +++ V + + LS AQ LRRT+E Y + R+IL SK+ E ++S
Sbjct: 115 SSASFFSKKPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKS 174
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLRRAILSFE 233
RC+ IR+ PTEE+I VL+ I E + S F L R+LR+ I++ E
Sbjct: 175 RCICIRVPLPTEEEIFTVLKNICDNENVSSSYNSKFFKTLINTHGRNLRKCIMALE 230
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 123/234 (52%), Gaps = 31/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L+QV + + LK V ++ PHLLF GPPG GK +++ R++FG
Sbjct: 14 IWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG- 72
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N EL+ SD D +V+ IK AK
Sbjct: 73 --------EDLWR-----------------ENFTELNASDERGID--IVRNKIKNFAKTA 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME++S++CR IL CN SSK+ E I+SRC
Sbjct: 106 PI---GGAPFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R ++E I + LE+IA +GL + G L + +R+A+ S +
Sbjct: 163 AVYRFRRLSDEAIKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAA 216
>gi|156098400|ref|XP_001615232.1| replication factor C subunit 5 [Plasmodium vivax Sal-1]
gi|148804106|gb|EDL45505.1| replication factor C subunit 5, putative [Plasmodium vivax]
Length = 349
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 138/237 (58%), Gaps = 11/237 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KY P++LD++ +H+DI + LKKL +D PH++FYG PG GK T I L++++F
Sbjct: 1 MWLEKYAPQSLDELKIHKDITERLKKLSAHKDLPHIIFYGAPGGGKSTRIDCLIKEIF-- 58
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
EK+ + +A ++ + + + S H+EL + G +D+ +VQ VIKE+ +
Sbjct: 59 KEEKI-IRRPECLTNAENK---ISINVVQSNYHLELQCFELGIKDKVIVQNVIKELCSYK 114
Query: 122 PIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + +++ V + + LS AQ LRRT+E Y + R+IL SK+ E ++S
Sbjct: 115 SSASFFSKAPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKS 174
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG---FATRLAEKSNRSLRRAILSFE 233
RC+ IR+ PTEE+I+ VL+ I++ E + F L K R+LR+ I++ E
Sbjct: 175 RCICIRVPLPTEEEIIGVLKDISESEHVSASFSSVEFFKTLINKHGRNLRKCIMALE 231
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------ETWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 123/234 (52%), Gaps = 30/234 (12%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+KYRPKTLD V+ DI + LK V ++ PHLLF GP G+GK T +AL ++
Sbjct: 5 LWVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLY-- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K E L +AN++EL+ SD D ++ IK+ AK
Sbjct: 63 -----KSEE------------------LVAANYLELNASDERGID--TIRTKIKDFAKTA 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P G+ FK++ L+E D L+ +AQ +LRR ME YSA+ R I CN SSK+ E I+SRC
Sbjct: 98 PF---GEVPFKIIHLDEADNLTADAQQALRRIMEMYSATTRFIFACNYSSKIIEPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R EE I L IA++EGL+ + + + LR+AI +T
Sbjct: 155 AVFRFGPIPEEAIKNRLIMIAEREGLKYTEDGISAIIYVAEGDLRKAINLLQTA 208
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 125/233 (53%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------DTWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 122/234 (52%), Gaps = 31/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP LDQV ++ + LK V ++ PHLLF GPPG GK +++ R++FG
Sbjct: 10 IWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG- 68
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N EL+ SD D VV+ IK AK
Sbjct: 69 --------EDLWR-----------------ENFTELNASDERGID--VVRTKIKNFAKTA 101
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FK++ L+E D L+ +AQ +LRRTME++S +CR IL CN SS++ E I+SRC
Sbjct: 102 PM---GGAEFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R ++E I K LE+IAK + L + L S +R+A+ S +
Sbjct: 159 AVFRFRRLSDEAIRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAA 212
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP LD ++ + + LK ++ + PHLLF GPPG GK +A+ +++FG
Sbjct: 5 IWIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFG- 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W N EL+ SD D VV+ IK+ +K
Sbjct: 64 ---------DAWH-----------------QNFTELNASDERGID--VVRTKIKDFSKTS 95
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME+Y+ +CR IL CN SSK+ E I+SRC
Sbjct: 96 PI---GGADFKIIFLDEADALTPDAQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRC 152
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R S + E + K + +IA++EGLQ+ + S +R+AI
Sbjct: 153 AVYRFRSLSYEAVEKRVRYIAEQEGLQISEDGVEAIKYVSQGDMRKAI 200
>gi|326491965|dbj|BAJ98207.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 591
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 146/246 (59%), Gaps = 11/246 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W D+YRP L + I ++ +A L ++VTE+ C H +F G GK+++++ALLR FGP
Sbjct: 209 VWADRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGP 268
Query: 62 GAEKVKVENKTWKIDAG---SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
+ +K+E T +I+ +++ID+++ S +HVE++ +D ++YV+ ++ E
Sbjct: 269 --DNLKMEEITKRIELKGEIAKHIDVKVKI--SDHHVEVNLADLHGYEKYVITTLLNESI 324
Query: 119 KNRPIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
P D KV+V+++ D+LS + QH + + +Y A C I+ SSS E++
Sbjct: 325 P--PPDLICDHANCKVIVVHDADRLSSDLQHYIGWFLGRY-AGCNKIIFSCSSSSNLESV 381
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
C +R+ P+ ++I+KVLEFIA +EG+ LP G A+R+A ++ +LR+AI SFE
Sbjct: 382 EHLCKVVRLKPPSFDEIIKVLEFIATQEGIDLPHGLASRIAASASNNLRQAIRSFEATWK 441
Query: 238 QQLRFT 243
FT
Sbjct: 442 ASYPFT 447
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------ETWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR +L CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 125/232 (53%), Gaps = 32/232 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD+V+ HQ+I + LK V ++ PHLLF G PG GK T + L + ++G
Sbjct: 5 WVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
TWK N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------NTWK-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR +L CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
R + E +VK L+ I++KE + + + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQT 204
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------ETWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 34/229 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRPK LD+V+ ++I + LK V + PHLLF GP G+GK T +AL R++FG
Sbjct: 4 VWVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ S+ H EL+ SD + +V+ IKE A+
Sbjct: 63 ---------DNWR----------------SSFH-ELNASDE--RGIGIVRTKIKEYARTA 94
Query: 122 -PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P D GFK++ L+E D L+ +AQ +LRRTME YS +CR IL CN SSK+ E I+SR
Sbjct: 95 APNDV----GFKIIFLDEADALTPDAQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSR 150
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R E I K L +IA+ EG ++ + S+ +R+AI
Sbjct: 151 CAVFRFTPLKAEDIKKRLRYIAENEGKEITDDALDAIVYISSGDMRKAI 199
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 125/233 (53%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +V+ H +I + L V ++ PHLLF G PG GK T +AL + ++G
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
TW+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------DTWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E +V+ L+ I++KE L L G + S +R+AI +T
Sbjct: 153 IFRFSPLKTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 122/238 (51%), Gaps = 37/238 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+T+D+V ++ LKK +T D PHLLFYGPPG+GK + I+A+ RQ+FGP
Sbjct: 25 WVEKYRPRTVDEVAFQDEVVAVLKKSLTSNDFPHLLFYGPPGTGKTSTILAIARQMFGPE 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K ++ +EL+ SD +R + V++E K
Sbjct: 85 LMKTRI--------------------------LELNASD----ERGI--SVVREKVKTLH 112
Query: 123 IDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+ K G FK+++L+E D ++ +AQ +LRR ME YS + R L CN S++ E +
Sbjct: 113 QSLRLKWGYPCPPFKIIILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSRIIEPL 172
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
SRC R + + L I KEGLQ+ + +L S +RRAI + C
Sbjct: 173 ASRCAKFRFKPLDAGILTEKLTAIGDKEGLQIDASAINQLTAASGGDMRRAITLMQCC 230
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 122/229 (53%), Gaps = 34/229 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRPK+LD+V+ +I LK V + PHLLF GP G+GK T +AL R++FG
Sbjct: 4 VWVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ A+ EL+ SD + +V+ IKE A+
Sbjct: 63 ---------ENWR-----------------ASFHELNASDE--RGIGIVRTKIKEYARTA 94
Query: 122 -PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P D GFK++ L+E D L+ +AQ +LRRTME YS +CR IL CN SSK+ E I+SR
Sbjct: 95 APNDV----GFKIIFLDEADALTPDAQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSR 150
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R E I K L++IA EG ++ + S +R+AI
Sbjct: 151 CAVFRFTPLKSEDIKKRLKYIADSEGKKITEDALNAIVYISGGDMRKAI 199
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 122/235 (51%), Gaps = 30/235 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD ++ H+DI ++ + + PHLLFYGPPG+GK + I+A+ R++FGP
Sbjct: 25 WVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGPQ 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
RN LEL + D G + VV+E IK A +
Sbjct: 85 F----------------RNSVLELN----------ASDDRGIE---VVREQIKSFASTKS 115
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K GFK++VL+E D +++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 116 V-FSSKGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 174
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R N +Q+ L + EG ++ L + S +RRA+ + C
Sbjct: 175 RFRFNPLELDQVEDRLNHVIDTEGCKITQDGKEALLKLSRGDMRRALNVLQACHA 229
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 32/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD ++ H+DI ++ + + PHLLFYGPPG+GK + I+A+ R++FGP
Sbjct: 24 WVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGP- 82
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ N +++A R ID VV+E IK A +
Sbjct: 83 ----QFRNSVLELNASDDRGID-------------------------VVREQIKSFASTK 113
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ K GFK++VL+E D +++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 114 SV-FSSKGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRC 172
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R N +Q+ L + + EG + L + S +RRA+ + C
Sbjct: 173 TRFRFNPLELDQVEDRLNHVIESEGCNITQDGKEALLKLSRGDMRRALNVLQACHA 228
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 130/234 (55%), Gaps = 32/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+KYRP++LD+++ ++I + LK+ V ++ PHLLF GPPG+GK T +AL ++G
Sbjct: 5 LWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYG- 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++W+ N +EL+ SD D V++ IK+ A+
Sbjct: 64 ---------ESWR-----------------DNTLELNASDERGID--VIRSRIKDYARTL 95
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK+++L+E D ++ +AQ +LRRTME +S + R IL N +SK+ E I+SRC
Sbjct: 96 PI---GDVPFKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRC 152
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + + L +IA++EG+ + G + E+S LR+AI + +
Sbjct: 153 AVFRFQPLPKGDAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAA 206
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 118/228 (51%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPKTLD V+ ++I LK V PHLLF GP G GK T +AL R+ FG
Sbjct: 7 IWTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W++ N EL+ SD D VV+ IK+ A+
Sbjct: 66 ---------ENWQV-----------------NFRELNASDERGID--VVRNQIKQFARTA 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 PM---GGAEFKILFLDEADALTNDAQAALRRTMENYAYTCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E + + L IAK EGL + + + + +R+AI
Sbjct: 155 ALYRFRPLDREAVTEELNRIAKTEGLSITEDAMSAIIYVAQGDMRKAI 202
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 130/236 (55%), Gaps = 34/236 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V+ H+DI ++K + + PHLLFYGPPG+GK + I+A+ R+++G G
Sbjct: 39 WVEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAG 98
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+K +T +++A R ID VV+E IK+ A+ R
Sbjct: 99 YKK-----QTLELNASDDRGID-------------------------VVREQIKQFAETR 128
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ +K G+K+++L+E D ++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 129 TLFSK---GYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRC 185
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + +++ K ++ + EG++L L + S +RRA+ + C
Sbjct: 186 TRFRFSPLPMKEVEKRVDHVVAAEGVKLTEDGKKALLKLSKGDMRRALNILQACHA 241
>gi|83273766|ref|XP_729542.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23487642|gb|EAA21107.1| Drosophila melanogaster BcDNA.LD06837, putative [Plasmodium yoelii
yoelii]
Length = 363
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 131/237 (55%), Gaps = 11/237 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KY P++LD++ +H+DI LKKL D PH++FYG PG GK T I L++++F
Sbjct: 15 MWLEKYAPRSLDELNIHKDITTRLKKLSVHNDLPHIIFYGSPGGGKSTRIDCLIKEIFKD 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA--K 119
+ EN T + N + + + S H+EL + G +D+ +VQ +IKE+ K
Sbjct: 75 EKIIRRPENIT-----NTEN-KININVIQSNYHLELQCFELGTKDKIIVQNIIKELCSYK 128
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ K +++ V + + LS AQ LRRT+E Y + R+IL SK+ E ++S
Sbjct: 129 SSASFFSKKPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKS 188
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQL---PSGFATRLAEKSNRSLRRAILSFE 233
RC+ IR+ PTEE+I VL+ I E + + F L R+LR+ I++ E
Sbjct: 189 RCICIRVPLPTEEEIFTVLKNICDNENVSSSYNSTNFFKTLINIHGRNLRKCIMALE 245
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 129/233 (55%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI ++K + + PHLLFYGPPG+GK + I+A+ R+++GP
Sbjct: 31 WVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGPD 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E +K+ A+ R
Sbjct: 91 YRK---------------------------QILELNASDDRGID--VVREQVKQFAETRT 121
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK+++L+E D +++ AQ +LRR +E+Y+ + R + CN +K+T A++SRC
Sbjct: 122 LFSK---GFKLIILDEADMMTQAAQAALRRVIEQYTKNVRFCIICNYVNKITPAVQSRCT 178
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + +++ + LE + + E ++L L + S +RRA+ + C
Sbjct: 179 RFRFSPLPIKEVERRLEGVIEAESVKLTPDGKDALLKLSKGDMRRALNVLQAC 231
>gi|253744271|gb|EET00499.1| Replication factor C, subunit 5 [Giardia intestinalis ATCC 50581]
Length = 373
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 16/240 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KY P LD + H+D + + ++ PHLL +GP GSG+ T I+A +R V+G
Sbjct: 1 MWCNKYTPTQLDAMDYHRDATRLFISVARAKNPPHLLVHGPRGSGRHTRILAYIRSVYGV 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++ + + E+ LS+A H+EL+PS+ G D +++Q V+KE A
Sbjct: 61 QTLDYIPSTMLYETNTDT----CEVNILSTACHLELNPSEMGNHDVFIIQTVLKETASTS 116
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I K FKV+VL + DKLS AQ +LRR ME+Y+A+C+LIL S S + I SRC
Sbjct: 117 SIGDK----FKVVVLQDADKLSFTAQQALRRLMEQYAATCKLILVAESISGLISPIVSRC 172
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPS----GFATRLAEKSNRS---LRRAILSFET 234
IR+ ++E+IV L+ K L +P+ T L E + + LRRA L +T
Sbjct: 173 FCIRVPGFSDEEIVHALDTTITKHRL-MPNFTKESLHTLLPEVAAVACGDLRRAFLLLQT 231
>gi|302843932|ref|XP_002953507.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
gi|300261266|gb|EFJ45480.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
Length = 356
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 129/236 (54%), Gaps = 34/236 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD+V H+ I +K+L E PHLL YGPPG+GK + I+A+ RQ++G
Sbjct: 38 WVEKYRPKSLDEVAAHKQIIDTIKRLTNENRLPHLLLYGPPGTGKTSTILAVARQIYG-- 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ N+ LEL + + G VV++ I++ A R
Sbjct: 96 --------------SSMANMTLELN----------ASDERGIS---VVRQEIQDFASTRT 128
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I + FK+++L+E D ++ +AQ +LRR +EKY+ + R L CN SKV A++SRC
Sbjct: 129 IFSNK---FKLIILDECDAMTNDAQFALRRVIEKYTRNARFCLICNYVSKVIPALQSRCT 185
Query: 183 NIRINSPTEEQIV-KVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R +P + Q V + L+++A E + L SG + E N +RR++ ++C +
Sbjct: 186 KFRF-APLDPQFVHERLQYVASTERVNLGSGALDAVVELGNGDMRRSLNILQSCHL 240
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 121/234 (51%), Gaps = 32/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPKTLD+VI + I + LK V + PHLLF GPPG GK +AL + +FG
Sbjct: 16 VWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKDMFG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
TW+ N EL+ SD D VV+ IK A+
Sbjct: 75 ---------DTWQ-----------------NNFTELNASDERGID--VVRNNIKNFARTA 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FK++ L+E D L+ +AQ +LRRTME+Y+A+CR I+ CN SSK+ E I+SRC
Sbjct: 107 PL---GDARFKIIFLDEADALTSDAQSALRRTMERYTATCRFIISCNYSSKIIEPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + I + I K EG+++ + + +RRA+ + ++
Sbjct: 164 AVYRFGPLGPKDIETMARRIEKGEGIKITKDGLDAIIYVARGDMRRAVNALQSA 217
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 124/234 (52%), Gaps = 31/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L+QV ++ + L V ++ PHLLF GPPG GK +++ R++FG
Sbjct: 14 IWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG- 72
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N EL+ SD D +V+ IK AK
Sbjct: 73 --------EDLWR-----------------ENFTELNASDERGID--IVRNKIKNFAKTA 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FK++ L+E D L+ +AQ +LRRTMEK+S++CR IL CN SSK+ E I+SRC
Sbjct: 106 PM---GGAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R +++ I + LE+IAK++ L + G L + +R+A+ S +
Sbjct: 163 AVYRFRRLSDKAIRERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAA 216
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ IR N +E ++ L +IA+ EG+++ + E + +R+AI
Sbjct: 152 VVMIRFNPLPKEAVISRLRYIAENEGVKISDDALETIYEFTQGDMRKAI 200
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 34/237 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRP+ L++V + I +NL+ V +++ PHL+F GP G GK +A+ R+ +
Sbjct: 6 IWTEKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFY-- 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKN 120
+ TW + N EL+ SD G + VV+ IK A+
Sbjct: 64 --------DDTW-----------------AENFTELNASDERGIE---VVRNTIKNFART 95
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
PI G FK++ L+E D L+ AQ +LRRTME+YS +CR IL CN SSK+ E I+SR
Sbjct: 96 MPI---GDAAFKIIFLDEADALTDAAQSALRRTMERYSGTCRFILSCNYSSKIIEPIQSR 152
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
C R S + + I ++IA EGL L + S +RRAI + ++ V
Sbjct: 153 CSVYRFKSLSYDAIASRAKYIADTEGLTLSEDALRAINYVSMGDMRRAINALQSASV 209
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP++LD ++ +DI + LK V E++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 5 ILWAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYG 64
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
E+ +E + R ID V++ +KE A+
Sbjct: 65 ENYEQYLLELNA----SDERGID-------------------------VIRNKVKEFART 95
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
T G FK ++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ + I+SR
Sbjct: 96 V---TPGSVPFKTVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIDPIQSR 152
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E ++ LEFI K+EG+Q + + +N +R+AI
Sbjct: 153 TALFRFYPLKKEDVISRLEFIMKQEGVQYDPKALDVIYDVTNGDMRKAI 201
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD+++ H+ I + LK+ + +QD PHLLF GP G+GK T +A+ ++++G
Sbjct: 13 IWIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYG- 71
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 72 ---------DDWR-----------------ENFLELNASDQRGID--VVRDRIKSFARA- 102
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +V+ L+E D L+ EAQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 103 ---SFGGYDHRVIFLDEADALTSEAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRC 159
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + E I + +E IA+ EG+++ L + +R+AI + V
Sbjct: 160 AVFRFSPLGEAAIEEQIEAIAEAEGIEITDDGMDALVYAAAGDMRKAINGLQAAAV 215
>gi|290559904|gb|EFD93226.1| replication factor C small subunit [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 313
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 37/230 (16%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+KYRP++ D+VI +DI + LK + ++++ H++ GPPG GK T + L ++VFG
Sbjct: 3 LWVEKYRPQSFDEVIGQKDIVEKLKAMSSKKEIQHMILSGPPGVGKTTCAVVLAKEVFGS 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAK 119
TW + N +EL+ SD DR V+Q +KE A+
Sbjct: 63 ----------TW-----------------NQNFIELNASD----DRKLSVIQGKVKEFAR 91
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+PID+ FK+++ +E D L++EAQ +LRR ME+YS++CR + N S + E ++S
Sbjct: 92 TKPIDSP----FKIILFDEADSLTQEAQQALRRMMEEYSSTCRFLFSVNYQSNIIEPLQS 147
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC +R ++ + K ++ IA+KE L++ S L S LR +
Sbjct: 148 RCAILRFQPLSKTDVTKFIDRIAEKEKLEIDSEAKDALEYVSRGDLRNLV 197
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 32/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP LD V+ ++ + LK V ++ PHLLF GPPG GK +A+ ++FG
Sbjct: 5 IWIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFG- 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W + N EL+ SD D VV+ IK AK
Sbjct: 64 ---------DSW-----------------NENFTELNASDERGID--VVRTKIKNFAKTS 95
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME+Y+ +CR IL CN SSK+ E I+SRC
Sbjct: 96 PI---GGADFKIIFLDEADALTSDAQSALRRTMERYTGNCRFILSCNYSSKIIEPIQSRC 152
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R +E + + + ++A EG++L + + +R+A+ + +
Sbjct: 153 AVYRFRPLADEPVKERIRYVADAEGIKLADDAIDAIGYVAQGDMRKALNALQAA 206
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I H+DI ++K ++E PHLLFYGPPG+GK + ++A +Q++
Sbjct: 16 WVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLASAKQLY--- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K K N A +EL+ SD D VV+ I A R
Sbjct: 73 --KEKEFN---------------------AMVLELNASDDRGID--VVRGPILSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++R+AQ++LRR +EKY+ + R L CN SK+ A++SRC
Sbjct: 108 I---FKKGFKLVILDEADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +++Q++ LEF+ ++E + + + S+ +RR++
Sbjct: 165 RFRFGPLSQDQMIPRLEFVIQQESIDVTPDGMKAIVTLSSGDMRRSL 211
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 130/227 (57%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I H+DI ++K ++E PHLLFYGPPG+G+ + I+A +Q++
Sbjct: 16 WVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILACAKQLY--- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
EK E T++ +EL+ SD D VV+ + A R
Sbjct: 73 KEK-------------------EFTSMV----LELNASDDRGID--VVRGPVLSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I KRGFK+++L+E D ++++AQ++LRR +EKY+ + RL L CN SK+ A++SRC
Sbjct: 108 I---FKRGFKLVILDEADHMTQDAQNALRRVIEKYTENTRLCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +Q++ LE++ ++E + + G + S+ +RR++
Sbjct: 165 RFRFGPLSPDQMIPRLEYVVQQESIDINPGGMKAIVTLSSGDMRRSL 211
>gi|224129392|ref|XP_002320575.1| predicted protein [Populus trichocarpa]
gi|222861348|gb|EEE98890.1| predicted protein [Populus trichocarpa]
Length = 725
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 144/249 (57%), Gaps = 11/249 (4%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
+KY+PK L I ++D A ++ ++ + DC H +F GP G GK+T+I A+L++ FG
Sbjct: 317 ANKYQPKALKDFICNRDQAIRMQGVMRDFDCNHFIFEGPAGVGKRTMIRAMLQEAFGQER 376
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE------- 116
+ + E K++ + G + +++ S+ HVE++ SD ++ V+ E+IKE
Sbjct: 377 VQAREECKSFNL-KGEQIGSIQVRVKVSSQHVEVNLSDLKGYEKQVIVELIKETHNNHNK 435
Query: 117 -MAKNRPIDTKGK-RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ N PI+ K + + ++L E D LS +A ++ +E+Y + CCN S++
Sbjct: 436 RIISNNPINPKSRLDDCRAIILYEADMLSTDALLYIKWVLERYKGFSKFFFCCNDVSRL- 494
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ IRS C +++ P++ ++V+VLEFIA++E ++LP A ++A+KS +LR+AI SFE
Sbjct: 495 QPIRSLCTVVQLLPPSKREVVQVLEFIAEQEAIELPYPLAEKIADKSKNNLRQAIRSFEA 554
Query: 235 CRVQQLRFT 243
FT
Sbjct: 555 SWHGSYPFT 563
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 30/235 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ ++ H+DI ++ + PHLLFYGPPG+GK + I+A+ R++FGP
Sbjct: 26 WVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIFGPQ 85
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
RN LEL + D G + VV+E IK A +
Sbjct: 86 F----------------RNSVLELN----------ASDDRGIE---VVREQIKGFASTKS 116
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ + K GFK++VL+E D +++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 117 VFSS-KGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 175
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R N +Q+ L + + EG ++ L + S +RRA+ + C
Sbjct: 176 RFRFNPLQLDQVEDRLNHVIENEGCKITQDGKEALLKLSRGDMRRALNVLQACHA 230
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ ++V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGIGVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSNIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ IR N +E ++ L FIA+ EG+++ + E + +R+AI + +
Sbjct: 152 VVMIRFNPLPKEAVISRLRFIAENEGVKVSDDALEAIYEFTQGDMRKAINALQVA 206
>gi|68073025|ref|XP_678427.1| replication factor C subunit 5 [Plasmodium berghei strain ANKA]
gi|56498890|emb|CAH97974.1| replication factor C subunit 5, putative [Plasmodium berghei]
Length = 349
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 131/237 (55%), Gaps = 11/237 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KY P+ LD++ +H+DI LKKL D PH++FYG PG GK T I L++++F
Sbjct: 1 MWLEKYAPRNLDELNIHKDITARLKKLSVHNDLPHIIFYGAPGGGKSTRIDCLIKEIFKD 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA--K 119
+ EN T + S+ + + + S H+EL + G +D+ +VQ +IKE+ K
Sbjct: 61 EKIIRRPENIT---NTESK---ININVIQSNYHLELQCFELGTKDKIIVQNIIKELCSYK 114
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + +++ V + + LS AQ LRRT+E Y + R+IL SK+ E ++S
Sbjct: 115 SSASFFSKRPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKS 174
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQL---PSGFATRLAEKSNRSLRRAILSFE 233
RC+ IR+ PTEE+I VL+ I E + + F L R+LR+ I++ E
Sbjct: 175 RCICIRVPLPTEEEIFTVLKNICDNENVSSNYNSTNFFKTLINIHGRNLRKCIMALE 231
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TL +I QDI L K V E++ PHLLF GPPG+GK T AL ++G
Sbjct: 15 LLWTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYG 74
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++ +E + R ID ++E +KE A++
Sbjct: 75 ESYQQFMLELNA----SDERGID-------------------------TIREKVKEFARS 105
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ T + FK+++L+E D ++ +AQ +LRR ME YSAS R IL N SK+ + I+SR
Sbjct: 106 K---TPPEIPFKIVLLDEADNMTSDAQQALRRLMELYSASTRFILAANYPSKIIDPIQSR 162
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R S +E ++ L++IA KEG+ + E S +R+AI
Sbjct: 163 CAFFRFTSLKKEDVIDRLKYIADKEGVDYEEDALDIIFEISEGDMRKAI 211
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 128/235 (54%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ ++V+ +++ LK+ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------DAWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEMYANTTRFILLANYVSGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
C R + +E ++ L FIA++EG+++ + + + +RRAI + +
Sbjct: 152 CAIFRFSPLPKEAVLSRLRFIAEQEGVKISQEALDAIFDFTQGDMRRAITALQIA 206
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ ++V+ +++ LK+ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 6 LFWFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 65
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
W+ N +EL+ SD G V++E +KE A+
Sbjct: 66 ----------DAWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 95
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 96 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEMYANTTRFILLANYVSRIIDPIIS 152
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R +E + K L +IAK+EG+ + + E S +RRAI
Sbjct: 153 RCAVFRFPPMPKELMAKRLAYIAKQEGITVTEDGIDAIYEISQGDMRRAI 202
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 33/250 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+T++ V + LKK + + PH+LFYGPPG+GK + I+AL RQ+FG
Sbjct: 9 WVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQLFGQD 68
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
K +V +EL+ SD G VV+E IK AK
Sbjct: 69 LVKSRV--------------------------LELNASDERGIN---VVREKIKNFAKQA 99
Query: 122 PIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P + +K+++L+E D ++++AQ +LRRTME YS S R L CN +++ E + S
Sbjct: 100 PKASTSASVPAYKIIILDEADSMTQDAQSALRRTMETYSKSTRFCLVCNYVTRIIEPVAS 159
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET-CRVQ 238
RC R E LE+IA++E + L G L + ++ LR+AI ++ R+
Sbjct: 160 RCSKFRFKPLDESDSKARLEYIAQEENIPLNEGVIDALIDNTHGDLRQAITYLQSAARLH 219
Query: 239 QLRFTMPSVD 248
Q + +VD
Sbjct: 220 QASNSAITVD 229
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TLD+V+ +++ LKK V E++ PHLLF GPPG+GK TL L ++G
Sbjct: 14 LLWAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYG 73
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +E + R ID V++ +KE A+
Sbjct: 74 DNYRQYMLELNA----SDERGID-------------------------VIRSKVKEFART 104
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R G+ FK+++L+E D ++ +AQ +LRR ME Y+A+ R IL N SK+ E I+SR
Sbjct: 105 R---VAGEVPFKIILLDEADNMTADAQQALRRLMELYTATTRFILIANYPSKIIEPIQSR 161
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R + E +V+ L++IA+KE ++ + + E S +R+AI
Sbjct: 162 CAVFRFTPLSREDVVERLKYIAEKENVKYNTEALETIHELSEGDMRKAI 210
>gi|308159636|gb|EFO62161.1| Replication factor C, subunit 5 [Giardia lamblia P15]
Length = 373
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 131/240 (54%), Gaps = 16/240 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KY P L+ + H D + + ++ PHLL +GP GSG+ T I+A +R V+G
Sbjct: 1 MWCNKYTPAQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRILAYIRSVYG- 59
Query: 62 GAEKVKVENKTWKIDAGSRNIDL-ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
V+ + N D E+ LS+A H+EL+PS+ G D +V+Q V+KE A
Sbjct: 60 ----VQTLDYIPSTMLYETNTDTCEVNILSTACHLELNPSEMGNHDVFVIQTVLKETAST 115
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
I K FKV+VL + DKLS AQ +LRR ME+YSA+C+LIL S S + I SR
Sbjct: 116 SSIGDK----FKVVVLQDADKLSFTAQQALRRLMEQYSATCKLILVTESISGLIPPIVSR 171
Query: 181 CLNIRINSPTEEQIVKVLE-FIAKKEGLQLPSGFATR-----LAEKSNRSLRRAILSFET 234
C IR+ ++E+IV LE I K +Q + + R +A + LRRA L +T
Sbjct: 172 CFCIRVPGFSDEEIVHALETTITKHRLMQSFTKESLRTLLPEIAAVARGDLRRAFLLLQT 231
>gi|124803688|ref|XP_001347790.1| replication factor C subunit 5, putative [Plasmodium falciparum
3D7]
gi|23496041|gb|AAN35703.1|AE014837_45 replication factor C subunit 5, putative [Plasmodium falciparum
3D7]
Length = 349
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 139/239 (58%), Gaps = 15/239 (6%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KY P+++D++ +H+DI + L+KL +D PH++FYG PG GK T I L++++F
Sbjct: 1 MWLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIF-- 58
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ K+ + I I++ + + S H+EL + G +D+ +VQ +IKE+ +
Sbjct: 59 --KDEKIIRRPECITNAENKININV--VQSNYHLELQCFELGNKDKIIVQSIIKELCSYK 114
Query: 122 PIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + +++ V + + LS AQ LRRT+E Y + R+IL SK+ E ++S
Sbjct: 115 SSASFFSKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKS 174
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR-----LAEKSNRSLRRAILSFE 233
RC+ IR+ P+EE+I VL+ I K+E + PS F+T L R+LR+ I++ E
Sbjct: 175 RCICIRVPLPSEEEIYSVLQNICKQENVS-PS-FSTYEYFQTLINTHGRNLRKCIMALE 231
>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe 972h-]
gi|1350581|sp|Q09843.1|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe]
Length = 340
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 31/230 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+ YRPKTLDQV + Q LKK + + PH+LFYG PG+GK + I+AL R++FGP
Sbjct: 21 WVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQ 80
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN-- 120
K +V +EL+ SD + +++E +K AK
Sbjct: 81 LMKSRV--------------------------LELNASDE--RGISIIREKVKSFAKTTV 112
Query: 121 -RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+D FK+++L+E D ++++AQ +LRRTME Y+ R L CN +++ + + S
Sbjct: 113 TNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSS 172
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R E +VK LEFIA + + + G L E S +R+AI
Sbjct: 173 RCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAI 222
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V +DI L+ + + D PHLLF GP G GK T A+ R+V+G
Sbjct: 13 IWIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYG- 71
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD +R + +V+++ KN
Sbjct: 72 ---------DDWR-----------------GNFLELNASD----ERGI--DVVRDRIKNF 99
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 100 ARASFGGHDYRIIFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 159
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R +++ + + IA +EG+++ L ++ +RRAI S +
Sbjct: 160 AVFRFAPLSDDAVAGQIRKIADREGIEMTDEGLDALVYAADGDMRRAINSLQAA 213
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 122/233 (52%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD V +D+ Q ++K E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 8 WVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYG-- 65
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + RN+ LEL + D G VV++ IK A R
Sbjct: 66 --------KNY------RNMVLELN----------ASDDRGID---VVRDQIKNFASTRQ 98
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FK+++L+E D +S AQ++LRR +EKY+ + R + N S K+ A+ SRC
Sbjct: 99 IFNSG---FKLIILDEADAMSNAAQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCT 155
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + + + ++++ K EGL++ S L E S +RRA+ + C
Sbjct: 156 RFRFSPLADSALQDRVDYVIKAEGLKIASDARQSLLELSEGDMRRALNVLQAC 208
>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
WM276]
gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
[Cryptococcus gattii WM276]
Length = 363
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 37/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + L+K + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 20 WVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGPD 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + VV+E IK A+ P
Sbjct: 80 LFRARV--------------------------LELNASDE--RGISVVREKIKSFARETP 111
Query: 123 -----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
+ + GK FK+++L+E D ++++AQ +LRR ME YS R L CN +++
Sbjct: 112 RHASGVSSDGKEYPCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRI 171
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
E + SRC R +E +E IA+ EG+Q G + + E + LR+AI +
Sbjct: 172 IEPLASRCSKFRFKPLEQESTRARMEMIAENEGVQTDPGVLSLILELAGGDLRKAITYLQ 231
Query: 234 TCR 236
T +
Sbjct: 232 TAQ 234
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 115/205 (56%), Gaps = 35/205 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD++I H+DI + + +TE PHLLFYGPPG+GK + I+A ++++G
Sbjct: 31 WVEKYRPSSLDELISHKDIISTIDRFITEDRVPHLLFYGPPGTGKTSTILACAKKMYGNR 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--VVQEVIKEMAKN 120
+ + +E L+ SD DR VV+E IKE A
Sbjct: 91 MQSMVLE---------------------------LNASD----DRGIGVVREQIKEFAST 119
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I + G G K+++L+E D ++ +AQ +LRR +EKY+ + R L CN SK+T AI+SR
Sbjct: 120 RTITSSG--GTKLVILDEADAMTSDAQAALRRVIEKYTRNTRFCLICNYVSKITPAIQSR 177
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKE 205
C R + EQ++ L F+ + E
Sbjct: 178 CTRFRFAPLSSEQMLDRLNFVIESE 202
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD++I HQDI +++ ++E PHLLFYGPPG+GK + I+A +Q++
Sbjct: 17 WVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYK-- 74
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ + A R
Sbjct: 75 --------------------DREFNSMV----LELNASDDRGID--IVRGPVLSFASTRT 108
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 109 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 165
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + E ++ LE + K+E + + L SN +RR++
Sbjct: 166 RFRFGPLSSEMMIPRLEHVVKEEHVDISPDGMKALVTLSNGDMRRSL 212
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIIS 150
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R + + + L+FIAK EG++L + E S +R+AI
Sbjct: 151 RCAVFRFSPMPRSLMAERLKFIAKNEGVELREDAINMIYELSEGDMRKAI 200
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ IR + +E + L +IA+ EG+++ + E + +RRAI
Sbjct: 152 TVMIRFSPLPKEAVFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAI 200
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 32/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD ++ H+DI ++ + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 25 WVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIYG-- 82
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ N +++A R ID VV+E IK A +
Sbjct: 83 ---AQFRNSVLELNASDERGID-------------------------VVREQIKSFASTK 114
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ K GFK++VL+E D +++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 115 SV-FGAKAGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRC 173
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R N +Q+ L+ + + E + G L + S +RRA+ + C
Sbjct: 174 TRFRFNPLEPDQVESRLQHVIESEHCNITPGGKEALLKLSRGDMRRALNVLQACHA 229
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ IR + +E + L +IA EG+++ + E + +RRAI
Sbjct: 152 TVMIRFSPLPKEAVFARLRYIADNEGVKITDDALEAIYEFTQGDMRRAI 200
>gi|424814736|ref|ZP_18239914.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
gi|339758352|gb|EGQ43609.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
Length = 317
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 33/237 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRP TL +V+ ++I L V E+ PH+L+ GP G+GK T +AL + ++G
Sbjct: 4 VWTEKYRPDTLSEVVGQEEIIDRLSAFVEEESIPHMLYAGPAGTGKTTSAVALAKDLYG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W + N +E + SD D VV+E IK+ A+ +
Sbjct: 63 ---------DQW-----------------NQNFMETNASDERGID--VVREKIKDFARTK 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI+ + +K++ L+E D L+ +AQ +LRRTME+++ +CR IL CN SSK+ + I+SRC
Sbjct: 95 PIEAE----YKIIFLDEADALTPDAQQALRRTMEQFTENCRFILSCNYSSKIIDPIQSRC 150
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
R N EE + ++ I + EG ++ + S+ LRR +T +Q
Sbjct: 151 AVFRYNRLEEEDVKNYIQRIGESEGFKVSEDALEAVMRVSDGDLRRVTNVLQTASIQ 207
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI +++ ++E PHLLFYGPPG+GK + I+A +Q++
Sbjct: 17 WVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYK-- 74
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 75 --------------------DREFNSMV----LELNASDDRGID--IVRGPILSFASTRT 108
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 109 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 165
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + E +V LE + K+E + + L SN +RR++
Sbjct: 166 RFRFGPLSPEMMVPRLEHVVKEECVDISPDGMKALVTLSNGDMRRSL 212
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TL+ V +DI L+ + + D PHLLF GP G GK T A+ R V+G
Sbjct: 15 IWIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD +R + +V+++ KN
Sbjct: 74 ---------DDWR-----------------GNFLELNASD----ERGI--DVVRDRIKNF 101
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R +L CN SSK+ + I+SRC
Sbjct: 102 ARASFGGYDYRIIFLDEADSLTSDAQSALRRTMEQFSDNTRFVLSCNYSSKIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + K +E IA+ EG++L L + +RRAI S +
Sbjct: 162 AVFRFSPLGDDAVRKQVEAIAETEGIELTEDGLDALVYAAGGDMRRAINSLQAA 215
>gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
Length = 417
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 2/238 (0%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSK 106
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ V D G + ++ T +S + V S+A +V K++ P
Sbjct: 107 NMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIIVG--TKQIFSTAP 164
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A+ SRC
Sbjct: 165 SSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 224
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
R + E+ I ++++ + +KE +Q+ L + S +RRA+ + C +
Sbjct: 225 RFRFSPLKEKDIRRLVDTVIEKEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSM 282
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W +KYRP+TLDQ+ H DI ++KL+ E PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 10 WSEKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYG-- 67
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ N+ LEL + D G VV+ I++ A R
Sbjct: 68 --------------SSLGNMTLELN----------ASDDRGIA---VVRNEIQDFASTRT 100
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I + FK+++L+E D ++++AQ +LRR MEKY+ + R L CN SK+ A++SRC
Sbjct: 101 IFSN---KFKLIILDECDAMTKDAQFALRRVMEKYTRNARFCLICNYVSKIIPALQSRCT 157
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E + LE+I ++E +++ G L E +RR +
Sbjct: 158 RFRFQPLPGEFVKGRLEYICQQESIKVTQGGLEALIELGCGDMRRTL 204
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 32/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD + ++I + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 18 IWIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYG- 76
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 77 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARSS 108
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+RG+ ++ L+E D L+ +AQ +LRRTME++S R IL CN SSK+ + I+SRC
Sbjct: 109 ---FNPERGYTIIFLDEADSLTNDAQSALRRTMEEFSDKTRFILSCNYSSKIIDPIQSRC 165
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ I + IA+ EG++L G L + +RRAI S +
Sbjct: 166 AVFRFSPLGDDAIAEQTRDIAEAEGIELTEGGLDALVYAAGGDMRRAINSLQAA 219
>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|407035358|gb|EKE37658.1| replication factor C familiy protein [Entamoeba nuttalli P19]
gi|449710429|gb|EMD49506.1| replication factor C familiy protein, putative [Entamoeba
histolytica KU27]
Length = 325
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 127/238 (53%), Gaps = 36/238 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP T D + H+ I ++LK+ + PH+LFYGPPG+GK T +A+++Q+ G
Sbjct: 5 WVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLCG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
T SA +EL+ SD D VV++ IK A R
Sbjct: 63 -------------------------TKFSALVLELNASDERGID--VVRDQIKSFASTRT 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ T K ++L+E DKL+++AQ++LRRT+E++SA+CR I CN +T AI+SRC
Sbjct: 96 LYTNCT---KFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE----TCR 236
+R + + + K++E I KEG+++ + E S R I + + TC+
Sbjct: 153 KMRFGPLSPDALTKIVENITMKEGMEIDEDAKKSIIEISKGDARSIINTLQALSMTCK 210
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 119/228 (52%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+TL +V+ +++ Q L V ++ PHLLF GPPG+GK +AL R +FG
Sbjct: 7 IWVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +E++ SD D VV+ IKE A+
Sbjct: 66 ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME YS CR IL CN S++ E I+SRC
Sbjct: 98 PI---GDAPFKIIFLDEADALTPDAQAALRRTMEMYSKICRFILSCNYVSRIIEPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ E + K L I + EG+++ L SN R+AI
Sbjct: 155 AVFKFRPVPPEAMRKRLLEICENEGVKITEDGLEALIYVSNGDFRKAI 202
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L+ V D PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ R + +E + L +IA+ EG+++ + E + +RRAI
Sbjct: 152 TVMFRFSPLPKEAVFTRLRYIAENEGVKISDDALETIYEFTQGDMRRAI 200
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 33/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TL V+ H++I L+ V + D PHLLF GP G GK T MA+ R+V+G
Sbjct: 14 IWIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYG- 72
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A+
Sbjct: 73 ---------DDWR-----------------ENFLELNASDERGID--VVRDRIKDFART- 103
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME+++ + R IL CN SS++ + I+SRC
Sbjct: 104 ---SFGGYDYRIIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRC 160
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R EE + + + +A++EG+++ L ++ +R+A+
Sbjct: 161 AVFRFGPLAEEAVGEYVRQVAEREGIEVTDDGVDALVYAADGDMRKAL 208
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ IR + +E + L +IA EG+++ + E + +RRAI
Sbjct: 152 TVMIRFSPLPKEAVFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAI 200
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI ++K ++E PHLLFYGPPG+GK + I+A RQ++
Sbjct: 16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYK-- 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D VV+ I A R
Sbjct: 74 --------------------DKEFNSMV----LELNASDDRGID--VVRGPILSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 108 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R ++ Q++ LE + ++E + + + S +RR++
Sbjct: 165 RFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSL 211
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI ++K ++E PHLLFYGPPG+GK + I+A RQ++
Sbjct: 16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYK-- 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D VV+ I A R
Sbjct: 74 --------------------DKEFNSMV----LELNASDDRGID--VVRGPILSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 108 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R ++ Q++ LE + ++E + + + S +RR++
Sbjct: 165 RFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSL 211
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI ++K + + PHLLFYGPPG+GK + I+A+ R+++GP
Sbjct: 39 WVEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAVARRIYGPE 98
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E IK+ A+ R
Sbjct: 99 YRK---------------------------QILELNASDDRGID--VVREQIKQFAETR- 128
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
T RGFK+++L+E D ++++AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 129 --TLFARGFKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCT 186
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ K + + + E ++L L + S +RRA+ + C
Sbjct: 187 RFRFSPLPIVEVEKRIGTVIEAEHVKLTEDGKKALLKLSKGDMRRALNVLQAC 239
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 122/229 (53%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPKTLD+++ ++I + LKK V E++ PHLLF GPPG+GK T AL +FG
Sbjct: 8 LLWAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFG 67
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
EN R LEL S +E ++ +KE A++
Sbjct: 68 --------EN--------YRQYMLELNA-SDERGIE------------TIRTKVKEFARS 98
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R T FK+++L+E D ++ +AQ +LRR ME Y+AS R IL N SK+ E I+SR
Sbjct: 99 R---TPPGIPFKIVLLDEADNMTADAQQALRRLMEMYTASTRFILIANYPSKIIEPIQSR 155
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +E +V L++I ++EG Q + E S +RRAI
Sbjct: 156 CAIFRFTPLKKEDVVARLKWICEQEGCQYDEEALETIYEISEGDMRRAI 204
>gi|159115535|ref|XP_001707990.1| Replication factor C, subunit 5 [Giardia lamblia ATCC 50803]
gi|157436099|gb|EDO80316.1| Replication factor C, subunit 5 [Giardia lamblia ATCC 50803]
Length = 373
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 127/241 (52%), Gaps = 18/241 (7%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KY P L+ + H D + + ++ PHLL +GP GSG+ T ++ +R V+G
Sbjct: 1 MWCNKYTPTQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRVLGYIRSVYGV 60
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++ + + E+ LS+A H+EL+PS+ G D +++Q V+KE A
Sbjct: 61 QTLDYIPSTMLYETNTDT----CEVNILSTACHLELNPSEMGNHDVFIIQTVLKETASTS 116
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I K FKV+VL + DKLS AQ +LRR ME+Y+A+C+LIL S S + I SRC
Sbjct: 117 SIGDK----FKVVVLQDADKLSFTAQQALRRLMEQYAATCKLILMAESISGLIPPIVSRC 172
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA--------TRLAEKSNRSLRRAILSFE 233
IR+ ++E+IV LE K +L GF +A + LRRA L +
Sbjct: 173 FCIRVPGFSDEEIVHALETTITKH--RLMQGFTKESLHALLPEVATVARGDLRRAFLLLQ 230
Query: 234 T 234
T
Sbjct: 231 T 231
>gi|269859750|ref|XP_002649599.1| replication factor C subunit [Enterocytozoon bieneusi H348]
gi|220066962|gb|EED44431.1| replication factor C subunit [Enterocytozoon bieneusi H348]
Length = 349
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 138/234 (58%), Gaps = 13/234 (5%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLW++KYRPK L+ + H DI L + T + P+L+FYG GS KKTL+ +L+ ++
Sbjct: 1 MLWIEKYRPKELNAINTHHDITA-LLQCFTLRTVPNLIFYGSVGSNKKTLVFSLINSLYK 59
Query: 61 --PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
P +K+ E + GSR ++++ L S + + ++PS +DR VVQ +IK++A
Sbjct: 60 AYPQFQKITTELQI----NGSR---IDVSYLESNDVILINPSIYKNKDRVVVQNIIKKVA 112
Query: 119 KNRPIDT---KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+++PI + G++ +++++ + L+++AQ +LR TME+YS+ ++ + C + + + E
Sbjct: 113 ESKPITSFLNSSFHGYRTILIDQAENLTKDAQAALRITMEQYSSYFKIFMICTNINTIIE 172
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
I+SR L IR E +++ +LE I+ KEG + +A SN RAI
Sbjct: 173 PIKSRSLLIRCRQFAENELITILETISLKEGYNISLDILKDIAINSNGDCGRAI 226
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 120/234 (51%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V ++I + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 18 IWIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 76
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 77 ---------DDWR-----------------GNFLELNASDQRGID--VVRDRIKNFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 108 ---SFGGHDYRIIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ I IAK EG++L L + +RRAI S +
Sbjct: 165 AVFRFSPLGDDAIADQTRDIAKAEGIELTEDGLDALVYAAGGDMRRAINSLQAA 218
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L+ V+ D + L+ + + PHLLF GPPG GK +++ R++FG
Sbjct: 5 IWIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFG- 63
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N EL+ SD D VV+ IK AK
Sbjct: 64 ---------DDWR-----------------ENFTELNASDERGID--VVRTKIKNFAKTS 95
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME+Y+ +CR IL CN SSK+ E I+SRC
Sbjct: 96 PI---GGADFKIIFLDEADALTPDAQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRC 152
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +++ I K IA+KEGL + + + +R+AI
Sbjct: 153 AVYRFRPLSDDAIGKRCRHIAEKEGLDIADDGIEAIKYVAEGDMRKAI 200
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI ++K + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 41 WVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGSE 100
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E IK A+ R
Sbjct: 101 YRK---------------------------QILELNASDDRGID--VVREQIKNFAETRT 131
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK+++L+E D ++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 132 LFSK---GFKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCT 188
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++ K L+ + + EG++L L + S +RRA+ + C
Sbjct: 189 RFRFSPLPISEVEKRLQKVIESEGVKLTDDGKKALLKLSKGDMRRALNVLQACH 242
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 29/245 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 33 WVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A +N+ LEL + D G + VV++ I++ A +
Sbjct: 91 --------------AQYQNMILELN----------ASDDRGIE---VVRQQIQDFASTKS 123
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K K+++L+E D ++++AQ +LRR +EKY+ S R L CN +SK+ A++SRC
Sbjct: 124 ISFGPKVNVKLVILDEADAMTKDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCT 183
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + + L ++ ++EGL + G + +N LR+A+ ++ ++
Sbjct: 184 RFRFAPLDPANVTERLRYVIQQEGLDVTDGGLAAIVRLANGDLRKALNILQSAQMASPHL 243
Query: 243 TMPSV 247
T +V
Sbjct: 244 TEEAV 248
>gi|405124075|gb|AFR98837.1| activator 1 41 kda subunit [Cryptococcus neoformans var. grubii
H99]
Length = 363
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 39/244 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + L+K + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 20 WVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGPD 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + VV+E IK A+ P
Sbjct: 80 LFRARV--------------------------LELNASDE--RGISVVREKIKSFARETP 111
Query: 123 -----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
I + GK FK+++L+E D ++++AQ +LRR ME YS R L CN +++
Sbjct: 112 RHAPGISSDGKEYPCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRI 171
Query: 174 TEAIRSRCLNIRINSPTEEQIVKV-LEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
E + SRC R P E+ + +E IA+ EG+Q G + + E + LR+AI
Sbjct: 172 IEPLASRCSKFRFK-PLEQGSTRARMEMIAENEGVQTDPGVISLILELAGGDLRKAITYL 230
Query: 233 ETCR 236
+T +
Sbjct: 231 QTAQ 234
>gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 539
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 36/238 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP T D + H+ I ++LK+ + PH+LFYGPPG+GK T +A+++Q+ G
Sbjct: 5 WVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLCG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
T SA +EL+ SD D VV++ IK A R
Sbjct: 63 -------------------------TKFSALVLELNASDERGID--VVRDQIKSFASTRT 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ T K ++L+E DKL+++AQ++LRRT+E++SA+CR I CN +T AI+SRC
Sbjct: 96 LYTNCT---KFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE----TCR 236
+R + + K++E I KEG+++ + E S R I + + TC+
Sbjct: 153 KMRFGPLSPNALTKIVENITTKEGMEIDDDAKKSIIEISKGDARSIINTLQALSMTCK 210
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPK+LD+++ +DI + LKK V E++ PH+LF GPPG+GK T +AL ++G
Sbjct: 7 LLWAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYG 66
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
EK + +EL+ SD D V++ +KE A++
Sbjct: 67 ---EKYR------------------------QYILELNASDERGID--VIRTKVKEFARS 97
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R T FK+++L+E D ++ +AQ +LRR ME YS + R IL N SK+ E ++SR
Sbjct: 98 R---TPPTVPFKLVILDEADNMTADAQQALRRLMEMYSTTTRFILLANFPSKIIEPVQSR 154
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C+ R ++++++ L++I +KEG+Q + S +R+AI
Sbjct: 155 CVYFRFRPLPKDKVIERLKYICQKEGVQCEEDALEEIYNISEGDMRKAI 203
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI +++ ++E PHLLFYGPPG+GK + I+A +Q++
Sbjct: 17 WVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYK-- 74
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 75 --------------------DREFNSMV----LELNASDDRGID--IVRGPILSFASTRT 108
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 109 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 165
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + ++ LE + K+E + + L SN +RR++
Sbjct: 166 RFRFGPLSSDMMIPRLEHVVKEERVDISPDGMKALVTLSNGDMRRSL 212
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP++LD ++ +DI + LK+ V E++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 5 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 64
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
E+ +EL+ SD D V++ +KE A+
Sbjct: 65 DSYEQF---------------------------FLELNASDERGID--VIRNKVKEFART 95
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
FKV++L+E D ++ +AQ +LRRTME Y+ S R IL CN SK+ + I+SR
Sbjct: 96 M---VSSSVPFKVILLDEADNMTADAQQALRRTMELYTESTRFILACNYLSKIIDPIQSR 152
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R +E +V LEFIAK+E ++ + + + +R+AI + +
Sbjct: 153 TALFRFYPLKKEDVVSRLEFIAKEEKVEYDEKALETIYDVTMGDMRKAINTLQAA 207
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 33/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TL V+ H++I L+ V + D PHLLF GP G GK T MA+ R+V+G
Sbjct: 14 IWIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYG- 72
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A+
Sbjct: 73 ---------DDWR-----------------ENFLELNASDERGID--VVRDRIKDFART- 103
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME+++ + R IL CN SS++ + I+SRC
Sbjct: 104 ---SFGGYDYRIIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRC 160
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R EE + + + +A+ EG+++ L ++ +R+A+
Sbjct: 161 AVFRFGPLAEEAVGEYIRRVAENEGIEVTDDGVDALVYAADGDMRKAL 208
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 29/234 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LDQ++ HQ I L+K +T PHLLFYGPPG+GK + IMAL +++G
Sbjct: 25 WVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTSTIMALAARLYG-- 82
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A RN N +EL+ SD D VV+ IK A R
Sbjct: 83 --------------ASFRN-----------NVLELNASDDRGID--VVRGQIKAFASTRN 115
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ + K FK+++L+E D +++ AQ +LRR ME+Y+ + R + CN +K+ AI+SRC
Sbjct: 116 VFSTQKDTFKLVILDEADAMTQAAQAALRRVMEQYTRNVRFCIICNYVNKIIPAIQSRCT 175
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + Q+ + ++ + E Q+ + + + +RRA+ + C
Sbjct: 176 RFRFSPLDRVQVERQIDSVIAAEHCQIDAKAKHAILQLCQGDMRRALNILQACH 229
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 124/236 (52%), Gaps = 36/236 (15%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPKTLD VI + I + LK V + PHLLF GPPG GK +AL + +FG
Sbjct: 6 VWTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFG- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKN 120
W+ N +EL+ SD G + VV+ IK A+
Sbjct: 65 ---------DAWQ-----------------NNFIELNASDERGIE---VVRNNIKNFART 95
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ G+ FKV+ L+E D L+ +AQ +LRRTME+Y+A+CR I+ CN SSK+ E I+SR
Sbjct: 96 SPL---GEARFKVIFLDEADALTADAQSALRRTMERYTATCRFIISCNYSSKIIEPIQSR 152
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETC 235
C R + + ++ I K E +++ P G L + +RRAI + ++
Sbjct: 153 CAIYRFGLLGPKDVETMVRRIEKGEHIKVSPDGLEA-LIYVARGDMRRAINALQSA 207
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 123/242 (50%), Gaps = 36/242 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V ++ L+K + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 149 WVEKYRPKTIDDVSSQENTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGPD 208
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + VV+E IK A+ P
Sbjct: 209 LFRSRV--------------------------LELNASDE--RGITVVREKIKTFARETP 240
Query: 123 ----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + GK FK+++L+E D ++ +AQ +LRR ME YS R L CN +++
Sbjct: 241 RHVSLSSDGKTYPCPPFKLIILDEADSMTHDAQSALRRIMETYSRITRFCLVCNYVTRII 300
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E + SRC R + +E I K EG+ + G R+ E + LR+AI +T
Sbjct: 301 EPLASRCSKFRFKPLAQGSSQARMEMIVKAEGVDIEDGVLDRILELAGGDLRKAITFLQT 360
Query: 235 CR 236
+
Sbjct: 361 AQ 362
>gi|297610986|ref|NP_001065475.2| Os10g0574500 [Oryza sativa Japonica Group]
gi|255679664|dbj|BAF27312.2| Os10g0574500 [Oryza sativa Japonica Group]
Length = 516
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 136/234 (58%), Gaps = 5/234 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W DKYRP L+ I ++D A L VT Q+C H++F GP GK++++ AL+ F
Sbjct: 178 IWADKYRPNFLNDFICNKDAALELYNQVTAQECNHIIFEGPTSVGKRSMVSALIWDAFAT 237
Query: 62 GAEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
K++ + K +++ +++ID+ + S++HVE++ +D +++V+ ++ E +
Sbjct: 238 DNLKIEEQTKRFELKGEIAKHIDIRVKI--SSHHVEVNLADIHGYEKHVITTLLNESIPS 295
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P +V+V+++ DKLS + QH + + +Y +++ CC+ +S + EA+R
Sbjct: 296 -PNSICSHANCRVIVVHDADKLSSDLQHYIGWFLGRYVGCNKIMFCCSDASNL-EAVRHL 353
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
C + + P+ ++I+KVLE+IA +E + LP A R+ S +LR+AI SFE
Sbjct: 354 CKVVTLKPPSSDEIIKVLEYIAVQESIDLPRDIARRITMSSGNNLRQAIRSFEA 407
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 120/228 (52%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD+++ QDI L+ V + PHLLF G G GK T +AL R++FG
Sbjct: 9 IWIEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFG- 67
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W++ N E++ SD D VV+ IKE A+
Sbjct: 68 ---------DSWQM-----------------NFREMNASDERGID--VVRNQIKEFARTS 99
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ FKVL L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 100 PL---AGATFKVLFLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRC 156
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E +++ + IA EGL + G + ++ +R+AI
Sbjct: 157 AIYRFRPLDREAVIEEITRIAAIEGLTVTEGALDAIVYVASGDMRKAI 204
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V+ H+DI ++K + PHLL YGPPG+GK + ++AL R+++GP
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + +EL+ SD D VV+E IK A +
Sbjct: 116 YRK---------------------------HILELNASDDRGID--VVREQIKNFAMTKV 146
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK+++L+E D +++ AQ +LRR +E+++ + R + CN +K+T AI+SRC
Sbjct: 147 LFSK---GFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCT 203
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + E++I ++ + +KEG+ L L + S +RRA+ + C
Sbjct: 204 RFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACH 257
>gi|429965353|gb|ELA47350.1| hypothetical protein VCUG_01119 [Vavraia culicis 'floridensis']
Length = 353
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 140/237 (59%), Gaps = 9/237 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML KY+PKTL+ + ++ A+NLK T PHL+ +G PG GK+TL+ A + +FG
Sbjct: 1 MLLDQKYQPKTLEDIQFNEKHAKNLKNF-TLSTIPHLIVHGRPGCGKRTLVYAFINHLFG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
E+ K +++ ++ + S + + ++ + S +VE+ PSD F+D+ V+Q VIK+MA+
Sbjct: 60 ---EQPKTHHRSIEVTSSS-DKKITISYVESDEYVEICPSDYNFKDKDVIQNVIKKMAET 115
Query: 121 RPIDT----KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+PI + K + K++++ +KL+++AQ +LRRT+E Y+ + R+IL CN + + +
Sbjct: 116 KPITSLISKKRQDKLKLILITRAEKLTKDAQAALRRTVETYADNFRMILICNDITGIIDP 175
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
I+SR L +RI + +++ L I +EG+ ++ N + RRA+ +
Sbjct: 176 IKSRMLCLRITVAPSDLLLRTLSEINTQEGICGSKETLKQIINDCNGNFRRALFFLQ 232
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V+ H+DI ++K + PHLL YGPPG+GK + ++AL R+++GP
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + +EL+ SD D VV+E IK A +
Sbjct: 116 YRK---------------------------HILELNASDDRGID--VVREQIKNFAMTKV 146
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK+++L+E D +++ AQ +LRR +E+++ + R + CN +K+T AI+SRC
Sbjct: 147 LFSK---GFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCT 203
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + E++I ++ + +KEG+ L L + S +RRA+ + C
Sbjct: 204 RFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACH 257
>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 363
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 127/244 (52%), Gaps = 39/244 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + L+K + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 20 WVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGPD 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + VV+E IK A+ P
Sbjct: 80 LFRARV--------------------------LELNASDE--RGISVVREKIKSFARETP 111
Query: 123 -----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
+ + GK FK+++L+E D ++++AQ +LRR ME YS R L CN +++
Sbjct: 112 RHAPAVSSDGKEYPCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRI 171
Query: 174 TEAIRSRCLNIRINSPTEEQIVKV-LEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
E + SRC R P E+ + +E IA+ EG+Q G + + E + LR+AI
Sbjct: 172 IEPLASRCSKFRFK-PLEQGSTRARMEMIAENEGVQTDPGVISLILELAGGDLRKAITYL 230
Query: 233 ETCR 236
+T +
Sbjct: 231 QTAQ 234
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 31/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D++ + + LK + PHLLFYGPPG+GK + I+A+ RQ+FGP
Sbjct: 19 WVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVAVGRQLFGPD 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K + +EL+ SD DR VV+E +K A+
Sbjct: 79 FRK-------------------------NGRFLELNASD----DRGIKVVREKVKSFAQG 109
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
G FK++VL+E D ++ +AQ +LRR ME YS R L CN S++ E + SR
Sbjct: 110 AISSASGLPPFKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASR 169
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
C R + + FIA +E + +P L E SN LR+AI ++ +
Sbjct: 170 CAKFRFAPLERGSMASRVRFIASEEHVNVPDPVLESLLECSNGDLRKAINYLQSAK 225
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I H+DI ++K ++E PHLLFYGPPG+GK + I+A +Q++
Sbjct: 16 WVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTILACAKQLY--- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
++K + +A +EL+ SD D VV+ I A R
Sbjct: 73 ------KDKEF-----------------NAMVLELNASDDRGID--VVRGPILSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++R+AQ++LRR +EKY+ + R L CN SK+ A++SRC
Sbjct: 108 I---FKKGFKLVILDEADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +++Q++ LE + ++E + + + S+ +RR++
Sbjct: 165 RSRFGPLSQDQMIPRLEHVIQQESIDVTPDGMKAIVTLSSGDMRRSL 211
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 28/249 (11%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+KYRP+ +D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 30 LWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAAGRQIFGD 89
Query: 62 GAEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+N+ +++A R I++ T + + + + S
Sbjct: 90 -----MYKNRILELNASDERGINVVRTKIKTFSQLAASSV-------------------- 124
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
RP D + FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ I SR
Sbjct: 125 RP-DGRPCPPFKIVILDEADSMTHAAQSALRRTMEKESQSTRFCLICNYVSRIIVPITSR 183
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC-RVQQ 239
C R S EE+++ L+FI ++EG+Q+ + + S LRRAI + ++C R++
Sbjct: 184 CSKFRFKSLGEEKVIARLQFICEQEGVQIDPDAYKSIVKISGGDLRRAITTLQSCFRLKG 243
Query: 240 LRFTMPSVD 248
T+ + D
Sbjct: 244 PEHTINTAD 252
>gi|409081372|gb|EKM81731.1| hypothetical protein AGABI1DRAFT_35783 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 344
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI +++ + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 28 WVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPGTGKTSTILAVARRIYGTS 87
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+K +EL+ SD D VV+E IK+ A+ R
Sbjct: 88 YKK---------------------------QILELNASDDRGID--VVREQIKQFAETRT 118
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK+++L+E D +++ AQ +LRR +E+++ + R + CN +K+T AI+SRC
Sbjct: 119 LFSK---GFKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCT 175
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++ K ++ + + E + L + L + S +RRA+ + C
Sbjct: 176 RFRFSPLPMTEVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQACH 229
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H+DI L++ V + D PHLLF GP G+GK T A+ R+V+
Sbjct: 18 VWIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAAQAIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S++ R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE+ + + IA +EG+++ L ++ +R+AI + V
Sbjct: 165 AVFRFTELTEDALEAQIREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAV 220
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD ++ H+ I + LK+ + + D PHLLF GP G GK T A+ ++V+G
Sbjct: 13 IWIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYG- 71
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 72 ---------DDWR-----------------ENFLELNASDQRGID--VVRDRIKSFARA- 102
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 103 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRC 159
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + + + + + IA EG++L L ++ +R+AI + V
Sbjct: 160 AVFRFSPLGDAAVDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAV 215
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L+ V D PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIIS 150
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R + + + + L IAK EG++L + E S +R+AI
Sbjct: 151 RCAIFRFSPMPKNLMAERLRLIAKSEGVELRDDAIDIIYELSEGDMRKAI 200
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIIS 150
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R + + + L++IAK EG+++ + E S +R+AI
Sbjct: 151 RCAVFRFSPMPRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAI 200
>gi|426196606|gb|EKV46534.1| hypothetical protein AGABI2DRAFT_71819 [Agaricus bisporus var.
bisporus H97]
Length = 344
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI +++ + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 28 WVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPGTGKTSTILAVARRIYGNS 87
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+K +EL+ SD D VV+E IK+ A+ R
Sbjct: 88 YKK---------------------------QILELNASDDRGID--VVREQIKQFAETRT 118
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK+++L+E D +++ AQ +LRR +E+++ + R + CN +K+T AI+SRC
Sbjct: 119 LFSK---GFKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCT 175
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++ K ++ + + E + L + L + S +RRA+ + C
Sbjct: 176 RFRFSPLPMTEVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQACH 229
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 32/235 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ HQDI Q ++K ++ PHLLFYGPPG+GK + I+A+ RQ+F
Sbjct: 31 WVEKYRPSTLDDVVSHQDIIQTIQKFISANQLPHLLFYGPPGTGKTSTILAVARQLFQ-- 88
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNR 121
T +S N++ EL+ SD D VV+E IK A R
Sbjct: 89 ------------------------TPMSFKNNILELNASDDRGID--VVREQIKNFASAR 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ + GFK+++L+E D++++ AQ +LRR +E+Y+ + R + CN +++ AI+SRC
Sbjct: 123 MVFSS---GFKLIILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNYVNRINPAIQSRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +I + + +A E +++ L +RR + + C
Sbjct: 180 TRFRFGPLDHPEIERRIAHVADAESVKISDDGRKALLNLCKGDMRRVLNVMQACH 234
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 35/235 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I H+DI + + V E+ PHLLFYGPPG+GK T I+A+ +Q++ P
Sbjct: 14 WVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAVAKQIYAPK 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
V +EL+ SD DR +V++ I A
Sbjct: 74 EFNSMV--------------------------LELNASD----DRGIGIVRDRILSFAST 103
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R T K GFK+++L+E D ++ +AQ++LRR +EK++ + R + CN SK+ A++SR
Sbjct: 104 R---TLFKSGFKLVILDEADAMTNDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSR 160
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
C R EQ+ L+++ ++E L + L +N +RR++ ++C
Sbjct: 161 CTRFRFGPLLPEQMKPRLQYVIEQEKLTVSEDGMDALVTLANGDMRRSLNILQSC 215
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD +I H+DI Q + K + E PHLLFYGPPG+GK + I+A +Q++ P
Sbjct: 10 WVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLYTP- 68
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R++ LEL + D G VV+ + A R
Sbjct: 69 --------------AQFRSMVLELN----------ASDDRGIN---VVRGQVLNFASTRT 101
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K GFK+++L+E D ++ +AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 102 I---FKSGFKLIILDEADAMTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCT 158
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +QI+ LE++ ++E +++ L + + +R+ +
Sbjct: 159 RFRFGPLDSKQIMPRLEYVVEQEKVKVTEDGKKALIDLAQGDMRKVL 205
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 32/233 (13%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP TLD+V+ HQDI ++K + PHLL YGPPG+GK + ++AL R+++GP
Sbjct: 33 VEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPPY 92
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
+K + +EL+ SD D VV++ IK A + +
Sbjct: 93 QK---------------------------HILELNASDDRGID--VVRDQIKSFAMTKVL 123
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
+K GFK+++L+E D +++ AQ +LRR +E ++ + R + CN +K+T AI+SRC
Sbjct: 124 FSK---GFKLVILDEADMMTQAAQSALRRVIETHTKNVRFCILCNYVNKITPAIQSRCTR 180
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + E+++ + ++ + +KEG+ L L + S +RRA+ + C
Sbjct: 181 FRFSPLPEKEVQRKVDDVVEKEGVNLTDDGRAALLKLSKGDMRRALNVLQACH 233
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 37/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L V HQDI + K V PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 45 WVEKYRPVSLSDVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARRIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
R + LEL + D G + VV+E IK A +
Sbjct: 103 -------------HQNMRQMVLELN----------ASDDRGIE---VVREHIKTFASTKQ 136
Query: 123 IDTKGKR-------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I T G GFK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 137 IFTAGSSASRAGIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSP 196
Query: 176 AIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R SP EQ ++VL + + ++EG+++ L S +RRA+ +
Sbjct: 197 ALLSRCTRFRF-SPLHEQDIRVLVDKVIEEEGVKIMPDAVDSLVRLSKGDMRRALNVLQA 255
Query: 235 CR 236
C
Sbjct: 256 CH 257
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 120/236 (50%), Gaps = 32/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRPK LD V+ ++I LK V + PHLLF G G GK T +AL ++ +G
Sbjct: 7 IWIEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKEFYG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W + N E++ SD D VV+ IK+ A+
Sbjct: 66 ---------EHWNV-----------------NFREMNASDERGID--VVRNQIKQFARTA 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 PI---GGAEFKILFLDEADALTNDAQAALRRTMENYARTCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R E I + L IA+ EGL L + + S +R+AI + + +
Sbjct: 155 AIYRFRPLDREAITEELMHIAENEGLTLSEDAISAIIYVSAGDMRKAINALQGAAI 210
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 122/236 (51%), Gaps = 32/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TL+ ++ ++I + L+ V PHLLF GP G GK T +AL R+ FG
Sbjct: 7 IWIEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREFFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+TW++ N EL+ SD D VV+ IK+ A+
Sbjct: 66 ---------ETWQM-----------------NFRELNASDERGID--VVRNQIKQFARTS 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G FKVL L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 PL---GGATFKVLFLDEADALTPDAQAALRRTMENYAQTCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R E + + + +A E + L +A + +R+A+ + + +
Sbjct: 155 AIYRFKGLDEAAVAEQVRRVAAAEEISLTDDAVHAIAYIAEGDMRKALNALQGAAI 210
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 32/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP LD ++ + LK V ++ PHLLF GPPG GK +++ +++F
Sbjct: 20 IWIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFA- 78
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W+ N EL+ SD D VV+ IK AK
Sbjct: 79 ---------DSWR-----------------ENFTELNASDERGID--VVRTKIKSFAKTS 110
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+ +AQ +LRRTME+Y+ +CR IL CN SSK+ E I+SRC
Sbjct: 111 PI---GGADFKIIFLDEADALTSDAQAALRRTMERYTNNCRFILSCNYSSKIIEPIQSRC 167
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R +++ + + + F+A EG+++ + + + +R+AI + +
Sbjct: 168 AVYRFRPLSDDAVTERVRFVASNEGIEVATDGMEAIKYVAQGDMRKAINALQAA 221
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 129/242 (53%), Gaps = 34/242 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI + K + + PHLLFYGPPG+GK + I+A+ R+++GP
Sbjct: 28 WVEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGPE 87
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E IK+ A+ R
Sbjct: 88 YRK---------------------------QILELNASDDRGID--VVREQIKQFAETRT 118
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK+++L+E D +++ AQ +LRR +E+Y+ + R + CN K+ AI+SRC
Sbjct: 119 LFSK---GFKLVILDEADMMTQAAQAALRRVIEQYTRNVRFCIICNYVGKIAPAIQSRCT 175
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
R + +++ + ++ + + EG+ + P G A L + +RR + + C +
Sbjct: 176 RFRFSPLPIKEVERRVDLVIEAEGVTITPDGKAA-LLRLARGDMRRVLNVLQACYAAYEK 234
Query: 242 FT 243
T
Sbjct: 235 IT 236
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V ++I + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 18 IWIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 76
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 77 ---------DDWR-----------------GNFLELNASDQRGID--VVRDRIKNFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 108 ---SFGGHDYRIIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ I IA EG++L L + +RRAI S +
Sbjct: 165 AVFRFSPLGDDAIADQTRDIAAAEGIELTEDGLDALVYAAGGDMRRAINSLQAA 218
>gi|424812315|ref|ZP_18237555.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756537|gb|EGQ40120.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
Length = 317
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRP TLD+V+ QDI + L+ V E PHL+F GP G+GK T +++ + ++G
Sbjct: 6 IWTEKYRPDTLDEVVGQQDIVERLQAFVEEGQIPHLMFSGPAGTGKTTSAVSVAKDLYGS 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N E + SD D VV++ IK A+ +
Sbjct: 66 ----------EWR-----------------QNFKETNASDERGID--VVRDQIKSFARTK 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P++ + +K++ L+E D L+ +AQ +LRRTME++S + R +L CN SSK+ + I+SRC
Sbjct: 97 PVNAE----YKMIFLDEADALTTDAQQALRRTMEQFSDNARFVLSCNYSSKIIDPIQSRC 152
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R N EEQ+ + + +A+ EG ++ + S LRR +T
Sbjct: 153 ALFRFNRLEEEQVRRYITRVAEGEGFRISEEAIQGVMRVSGGDLRRTTNVLQTV 206
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 33/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WVDKYRPK++++V +++ L+K + + PHLLFYGPPG+GK + +A+ RQ++GP
Sbjct: 8 WVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLYGPE 67
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V+ EL+ SD + VV+E IK A
Sbjct: 68 LAKARVK--------------------------ELNASDE--RGINVVREKIKSFAATSV 99
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+P+ FK+L+L+E D ++++AQ++LRRTME +S R I CN S++ E + S
Sbjct: 100 GQPVPGYPCPPFKLLILDEADAMTQDAQNALRRTMEAHSKVTRFIFICNYVSRIIEPLAS 159
Query: 180 RCLNIRINSPTEEQIVKV-LEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
RC R P I+ + I +EG+QL G L + S LR+AI + ++
Sbjct: 160 RCAKFRFR-PLHGGIMSARISHICNEEGVQLQEGAMETLGKVSGGDLRKAITTLQS 214
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 34/233 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M WV+KYRP TLD ++ H++I L KLV ++ PHLLFYGPPG+GK + I+ R +F
Sbjct: 12 MPWVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARMMFT 71
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV--VQEVIKEMA 118
P +L ++ +EL+ SD DR + V++ I A
Sbjct: 72 PK----------------------QLASMV----LELNASD----DRGIGIVRDQIMNFA 101
Query: 119 KNRP--IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+ + +D GK K+++L+E D ++++AQ++LRR +EK++ + R + CN SK+ A
Sbjct: 102 QTKTLHVDENGKSHIKLIILDEADAMTKDAQNALRRVIEKFTENVRFCIICNYLSKIIPA 161
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
++SRC R EEQI+ L IAK E L+L L + + +RR +
Sbjct: 162 VQSRCTRFRFAPLKEEQILPRLRHIAKSESLKLTEDGERALMKLAGGDMRRVL 214
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD++I HQDI ++K ++E PHLL YGPPG+GK + I+A RQ++
Sbjct: 24 WVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLYK-- 81
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 82 --------------------DKEFNSMV----LELNASDDRGID--IVRGPILSFASTRT 115
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 116 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 172
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + +E + + L S+ +RRA+
Sbjct: 173 RFRFGPLTPELMVPRLEHVIAEEKVDVSEDGMKALVTLSSGDMRRAL 219
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V+ H+DI ++K + PHLL YGPPG+GK + ++AL R+++GP
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + +EL+ SD D VV+E IK A +
Sbjct: 116 YRK---------------------------HILELNASDDRGID--VVREQIKNFAMTKV 146
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK+++L+E D +++ AQ +LRR +E+++ + R + CN +K+T AI+SRC
Sbjct: 147 LFSK---GFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCT 203
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + E++I ++ + +KEG+ L + + S +RRA+ + C
Sbjct: 204 RFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALNVLQACH 257
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 122/230 (53%), Gaps = 34/230 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK +D +I ++I + LK V +++ PHLLF GPPG+GK T +AL +++G
Sbjct: 3 IWTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG- 61
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D V++ +KE A+ +
Sbjct: 62 ---------DAWR-----------------ENFLELNASDERGID--VIRHKVKEFARAK 93
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI G FK++ L+E D L+R+AQ +LRR MEKYS S R IL CN SK+ E I+SR
Sbjct: 94 PI---GDVPFKIVFLDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRV 150
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPS--GFATRLAEKSNRSLRRAI 229
+ +E +++ I K EGL L + L + + LR+AI
Sbjct: 151 TVFKFKPLEKEAFRELINRIVKGEGLILENEDEIINALYDIAEGDLRKAI 200
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 121/236 (51%), Gaps = 38/236 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT++ V + L+K +T + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 27 WVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
K +V +EL+ SD G +V+E IK A+
Sbjct: 87 NFKNRV--------------------------LELNASDERGIS---IVREKIKNFARQT 117
Query: 122 P----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
P + + GK +K+++L+E D ++++AQ +LRR ME Y+ R L CN +++
Sbjct: 118 PRAQAVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRI 177
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R E L +IAK+E + + + L SN LRRAI
Sbjct: 178 IEPLASRCSKFRFTPLDSESATSRLTYIAKEEQIDVDTSVIDALITVSNGDLRRAI 233
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I LK+ V + D PHL+F GP G+GK T A+ R+V+
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S++ R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE+ + + IA +EG+++ L ++ +R+AI + V
Sbjct: 165 AVFRFTELTEDAVEAQIREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAV 220
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V+ H+DI ++K + PHLLFYGPPG+GK + ++AL R+++G
Sbjct: 56 WVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYGSA 115
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+K + +EL+ SD D VV+E IK A +
Sbjct: 116 YKK---------------------------HILELNASDDRGID--VVREQIKNFAMTKV 146
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +KG FK+++L+E D +++ AQ +LRR +E+++ + R + CN +K+T AI+SRC
Sbjct: 147 LFSKG---FKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCT 203
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + E++I ++ + +KEG+ L L + S +RRA+ + C
Sbjct: 204 RFRFSPLPEKEIQVKVDEVVQKEGVNLTEDGRDALLKLSRGDMRRALNVLQACH 257
>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
Length = 384
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 120/239 (50%), Gaps = 36/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D+V + LKK + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 31 WVEKYRPKTIDEVAAQEHTVAVLKKTLLSNNLPHMLFYGPPGTGKTSTILALARQLFGPE 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + VV+E IK AK
Sbjct: 91 LMKTRV--------------------------LELNASDE--RGITVVREKIKNFAKLAV 122
Query: 123 IDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
T K G FK+++L+E D ++++AQ +LRR ME+YS R L CN +++ E +
Sbjct: 123 --TNPKEGFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPL 180
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETC 235
SRC R S LE IA E + SG L S+ LRRAI ++
Sbjct: 181 ASRCSKFRFRSLDTSSTKARLEMIASAESVAFRDSGVLDTLISTSDGDLRRAITYLQSA 239
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+T D V DI + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + + + IA EG+++ L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAVAEQVRDIAAAEGIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 31/228 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 41 WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS- 99
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ N +++A R ID VV++ I++ A R
Sbjct: 100 ----QYSNMILELNASDERGID-------------------------VVRQQIQDFAGAR 130
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ + K+++L+E D ++++AQ +LRR +EKY+ S R L CN +K+ A++SRC
Sbjct: 131 SLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRC 190
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + L+ I K EGL + G T L SN +R+A+
Sbjct: 191 TRFRFAPLDGSHVRERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKAL 238
>gi|363540259|ref|YP_004894456.1| mg405 gene product [Megavirus chiliensis]
gi|350611424|gb|AEQ32868.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 449
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 9/238 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M +KYRPK + I ++D + L L + +D PH++ GPPG+GKKTL+ L ++
Sbjct: 1 MFLFEKYRPKNFREFIFNKDTLEELNFLASNEDIPHIIISGPPGAGKKTLVKFFLESIYD 60
Query: 61 PGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
V + +K + I+ S ++E+ L S H+ + P+ D+Y++QE+IK+ A
Sbjct: 61 SD---VNILSKMKYHINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAM 114
Query: 120 NRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
++ + K R FK +V+ ++ L+ +Q +LRRTME Y+ +CR I+ N+ SK+ + +R
Sbjct: 115 HKSFNIFKTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLR 174
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC ++ P E I V+ I E + L + + + +++RAI + CR
Sbjct: 175 SRCRTFCVSQPCIEDIRNVITHITIMENITLNYNEMKFILDNCDNNIKRAIWILD-CR 231
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I L++ V + D PHL+F GP G+GK T A+ R+V+G
Sbjct: 20 VWIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYG- 78
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A+
Sbjct: 79 ---------DDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARA- 109
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 110 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 166
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE+ I + IA+ EG+++ L ++ +R+AI + + V
Sbjct: 167 AVFRFTELTEDAIEAQVREIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAV 222
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 32/228 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD V+ + + + LK +V ++ PH+LF GPPG+GK A + +FGP
Sbjct: 11 WVEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHAFAQDLFGP- 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
R I+ + +E++ SD G + ++E +K A++
Sbjct: 70 -----------------RYIE-------DGHFIEINASDERGIE---TIRERVKTYARSV 102
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P G GF++L+L+E D+L+ AQH+ RRTME++S +CR IL N S+++ E I+SRC
Sbjct: 103 PF---GGIGFRLLLLDESDQLTDAAQHAFRRTMEQFSTTCRFILAANYSNRIIEPIQSRC 159
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+R +++ + +L+ IA E ++L + E S +R+AI
Sbjct: 160 AVLRFKPLSKDMVETMLKKIAASENIKLDDSAIDAIYEFSLGDMRKAI 207
>gi|425701286|gb|AFX92448.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 457
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 9/238 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M +KYRPK + I ++D + L L + +D PH++ GPPG+GKKTL+ L ++
Sbjct: 1 MFLFEKYRPKNFREFIFNKDTLEELNFLASNEDIPHIIISGPPGAGKKTLVKFFLESIYD 60
Query: 61 PGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
V + +K + I+ S ++E+ L S H+ + P+ D+Y++QE+IK+ A
Sbjct: 61 SD---VNILSKMKYHINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAM 114
Query: 120 NRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
++ + K R FK +V+ ++ L+ +Q +LRRTME Y+ +CR I+ N+ SK+ + +R
Sbjct: 115 HKSFNIFKTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLR 174
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC ++ P E I V+ I E + L + + + +++RAI + CR
Sbjct: 175 SRCRTFCVSQPCIEDIRNVITHITIMENITLNYNEMKFILDNCDNNIKRAIWILD-CR 231
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 34/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD+V H+ + +KK V E PHLLF+GPPG+GK T I+A+ RQ++G
Sbjct: 19 WVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGK- 77
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
RN+ L EL+ SD D VV++ IK A R
Sbjct: 78 ---------------NYRNMIL-----------ELNASDERGID--VVRDQIKTFASTRQ 109
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I + GFK+++L+E D ++ AQ++LRR +EKYSA R + N + K+ A+ SRC
Sbjct: 110 IFSS---GFKLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCT 166
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETC 235
R + E+ I L + ++E + L P F + L S+ +RRA+ + C
Sbjct: 167 RFRFSPLKEDAIKHRLAHVIEQESVDLSPEAFQS-LLHLSSGDMRRALNVLQAC 219
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 31/228 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 41 WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS- 99
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ N +++A R ID VV++ I++ A R
Sbjct: 100 ----QYSNMILELNASDERGID-------------------------VVRQQIQDFAGAR 130
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ + K+++L+E D ++++AQ +LRR +EKY+ S R L CN +K+ A++SRC
Sbjct: 131 SLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRC 190
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + L+ I K EGL + G T L SN +R+A+
Sbjct: 191 TRFRFAPLDGSHVRERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKAL 238
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 34/244 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYG-- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
S+N+ + L++++ D G VV+E IK A +
Sbjct: 105 ----------------SKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 138
Query: 122 -----PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
P G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A
Sbjct: 139 IFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPA 198
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+ SRC R + E+ I K+++ + KE +Q+ L + S +RRA+ + C
Sbjct: 199 LLSRCTRFRFSPLKEQDIRKLVDTVIDKEQVQIQPDAIDSLVKLSKGDMRRALNVLQACH 258
Query: 237 VQQL 240
+
Sbjct: 259 ASSM 262
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 32/235 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI ++K + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 41 WVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYGNE 100
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +E + R ID VV+E IK A+ R
Sbjct: 101 YRKQILELNA----SDDRGID-------------------------VVREQIKNFAEMRT 131
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K GFK++VL+E D +++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 132 LYSK---GFKLIVLDEADMMTQAAQSALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCT 188
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + + +I K ++ + + E + L L + S +RRA+ + C
Sbjct: 189 RFRFSPLPQTEIEKRIKQVVEAEHVNLTEDGKQALLKLSKGDMRRALNILQACHA 243
>gi|359489140|ref|XP_002265263.2| PREDICTED: uncharacterized protein LOC100265748 [Vitis vinifera]
Length = 659
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 133/234 (56%), Gaps = 5/234 (2%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W DKYRPK L I ++D A L+ LV + PH +F G G GKKT+I A LR+VFG
Sbjct: 294 WADKYRPKALSDFICNRDKAVQLQDLVKVEQHPHFIFEGLAGVGKKTMISAFLREVFGHD 353
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ + E K + + S R+I + + S +H+E++ SD ++ V+ ++I E NR
Sbjct: 354 RVQTREECKEFYLKGESIRSIRVNVKV--SCHHIEVNLSDLKGYEKQVIVQLIHETGNNR 411
Query: 122 PIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ + + +VL E +KLS EA + ++KY + C+ +SK+ + I+S
Sbjct: 412 ANKAVRVNQEVQSIVLYEAEKLSTEALLYFKWLLDKYEGHNMVFFSCSDTSKL-QPIKSL 470
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
C +++ P++E+IV+VLE IAK+E + LP A ++ S +LR+AI SFE
Sbjct: 471 CTMVQLLPPSDEEIVEVLELIAKQESINLPRELAEKIVGNSKNNLRQAIRSFEA 524
>gi|448825359|ref|YP_007418290.1| putative replication factor C small subunit [Megavirus lba]
gi|444236544|gb|AGD92314.1| putative replication factor C small subunit [Megavirus lba]
Length = 457
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 9/238 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M +KYRPK + I ++D + L L + +D PH++ GPPG+GKKTL+ L ++
Sbjct: 1 MFLFEKYRPKNFREFIFNKDTLEELNFLASNEDIPHIIISGPPGAGKKTLVKFFLESIYD 60
Query: 61 PGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
V + +K + I+ S ++E+ L S H+ + P+ D+Y++QE+IK+ A
Sbjct: 61 SD---VNILSKMKYHINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAM 114
Query: 120 NRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
++ + K R FK +V+ ++ L+ +Q +LRRTME Y+ +CR I+ N+ SK+ + +R
Sbjct: 115 HKSFNIFKTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLR 174
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC ++ P E I V+ I E + L + + + +++RAI + CR
Sbjct: 175 SRCRTFCVSQPCIEDIRNVITHITIMENITLNYNEMKFILDNCDNNIKRAIWILD-CR 231
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 33/229 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
PI K FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S + E I+SR
Sbjct: 95 API----KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSR 150
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R N ++ ++ L +IA+ EG++ + E + +R+AI
Sbjct: 151 VVMVRFNPLPKDAVIARLRYIAENEGIKASDDALETIFEFTQGDMRKAI 199
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 32/235 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI ++ + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 38 WVEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYGDD 97
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +E + R ID VV+E IK+ A+ R
Sbjct: 98 FRKQILELNA----SDDRGID-------------------------VVREQIKQFAETRT 128
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K G+K+++L+E D +++ AQ +LRR +E+Y+ + R + CN +K+T AI+SRC
Sbjct: 129 LFSK---GYKLIILDEADMMTQAAQAALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCT 185
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + ++ + EG+QL L + S +RRA+ + C
Sbjct: 186 RFRFSPLPIPEVERRVQTVVDAEGVQLREDGKKALLKLSKGDMRRALNVLQACHA 240
>gi|371943702|gb|AEX61530.1| putative replication factor C small subunit [Megavirus courdo7]
Length = 457
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 9/238 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M +KYRPK + I ++D + L L + +D PH++ GPPG+GKKTL+ L ++
Sbjct: 1 MFLFEKYRPKNFREFIFNKDTLEELNFLASNEDIPHIIISGPPGAGKKTLVKFFLESIYD 60
Query: 61 PGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
V + +K + I+ S ++E+ L S H+ + P+ D+Y++QE+IK+ A
Sbjct: 61 SD---VNILSKMKYHINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAM 114
Query: 120 NRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
++ + K R FK +V+ ++ L+ +Q +LRRTME Y+ +CR I+ N+ SK+ + +R
Sbjct: 115 HKSFNIFKTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLR 174
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC ++ P E I V+ I E + L + + + +++RAI + CR
Sbjct: 175 SRCRTFCVSQPCIEDIRNVITHITIMENITLNYNEMKFILDNCDNNIKRAIWILD-CR 231
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 31/246 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 41 WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS- 99
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ N +++A R ID VV++ I++ A R
Sbjct: 100 ----QYSNMILELNASDERGID-------------------------VVRQQIQDFAGAR 130
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ + K+++L+E D ++++AQ +LRR +EKY+ S R L CN +K+ A++SRC
Sbjct: 131 SLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRC 190
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
R + + L+ I K EGL + G T L SN +R+A+ ++ + +
Sbjct: 191 TRFRFAPLDGSHVRERLQHIIKSEGLSVDEGGLTALVRLSNGDMRKALNILQSTHMASQQ 250
Query: 242 FTMPSV 247
T +V
Sbjct: 251 ITEEAV 256
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 128/246 (52%), Gaps = 31/246 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++GP
Sbjct: 11 WVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKLYGP- 69
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ +N +++A R ID VV++ I++ A +
Sbjct: 70 ----QFQNMILELNASDDRGID-------------------------VVRQQIQDFASTQ 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I K K+++L+E D ++++AQ SLRR +EKY+ + R L CN SK+ A++SRC
Sbjct: 101 SISFGEKANVKLIILDEADAMTKDAQFSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRC 160
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
R + + + LEF+ +E L + + + SN +R+A+ ++ ++ +
Sbjct: 161 TRFRFPPLQAQHVRERLEFVIDQERLDVTEDGLSAIVRLSNGDMRKALNILQSTQMAEPH 220
Query: 242 FTMPSV 247
T +V
Sbjct: 221 VTEAAV 226
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 121/235 (51%), Gaps = 36/235 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT++ V + L+K +T + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 27 WVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + +V+E IK A+ P
Sbjct: 87 NFKNRV--------------------------LELNASDE--RGISIVREKIKNFARQTP 118
Query: 123 ----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + GK +K+++L+E D ++++AQ +LRR ME Y+ R L CN +++
Sbjct: 119 RAQAVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R E L +IAK+E + + + L SN LRRAI
Sbjct: 179 EPLASRCSKFRFTPLDSESATSRLTYIAKEEQIDVDTSVIDALITVSNGDLRRAI 233
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIIS 150
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R + + + L IAK EG++L + E S +R+AI
Sbjct: 151 RCAVFRFSPMPRSLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAI 200
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + ++AL ++++GP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPD 94
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++++ +++A R I + + + ++L+ G++D+Y
Sbjct: 95 M----IKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPP--------- 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 142 ---------FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + K LE IA+KEG+ L G L + S LR+AI ++
Sbjct: 193 SKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITFLQSA 246
>gi|451927542|gb|AGF85420.1| replication factor C small subunit [Moumouvirus goulette]
Length = 400
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 136/244 (55%), Gaps = 8/244 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M +KYRPK + + ++D + L L + +D PH++ GPPG+GKKTL+ L ++
Sbjct: 1 MFLFEKYRPKNSREFLFNKDTLEQLNYLASNEDIPHIIISGPPGAGKKTLVKFFLEAIYD 60
Query: 61 PGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
V + +K + I+ S ++E+ S H+ + P+ D+Y++QE+IK+ A
Sbjct: 61 SD---VNILSKMKYNINGSSTKKEIEI--FQSNYHIIIEPTSTN-HDKYILQEIIKQYAM 114
Query: 120 NRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
++ + K R FK +V+ ++ L+ +Q +LRRTME Y+ +CR I+ N+ SK+ + +R
Sbjct: 115 HKSFNIFKTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLR 174
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
SRC ++ P+ + I V+ I+ E ++L + + + + +++RAI ++ R+
Sbjct: 175 SRCRTFCVSLPSIDDIRNVVTHISVMENIRLENDDMNFILDNCDNNIKRAIWILDSKRLH 234
Query: 239 QLRF 242
F
Sbjct: 235 SDPF 238
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD +I HQDI ++K + E PHLLFYGPPG+GK + I+A ++++ P
Sbjct: 9 WVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACAKELYTPQ 68
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
V +EL+ SD DR VV+ I A
Sbjct: 69 QFNSMV--------------------------LELNASD----DRGINVVRNQIMSFAST 98
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I K GFK+++L+E D ++ +AQ++LRR +EK++ + R L CN SK+ AI+SR
Sbjct: 99 RSI---FKSGFKLIILDEADAMTNDAQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSR 155
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +QI+ + ++ ++E +++ L ++ +RR I
Sbjct: 156 CTRFRFGPLKSDQILPRMNYVIEEEKIKVTEDGRQALLSLAHGDMRRVI 204
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 29/245 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V H+DI + +L TE PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 42 WVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +N+ LEL + D G VV++ I++ A +
Sbjct: 100 --------------SQYQNMILELN----------ASDDRGID---VVRQQIQDFASTQS 132
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K K+++L+E D ++++AQ +LRR +EKY+ S R L CN +K+ A++SRC
Sbjct: 133 LSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCT 192
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + + L+ + K EGL + L SN +R+A+ ++ + +
Sbjct: 193 RFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQI 252
Query: 243 TMPSV 247
T +V
Sbjct: 253 TEETV 257
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRPK+ +++ ++I L + + + PHLLFYGPPG+GK T + L R+++G
Sbjct: 4 LFWFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------ERWR-----------------ENTLELNASDE--RGINVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P G FK++VL+E D ++ +AQ +LRR ME Y+A+ R +L N S + E I+SR
Sbjct: 95 AP---AGGAPFKLVVLDEADNMTSDAQQALRRIMEMYAATTRFVLLANYVSGIIEPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
C R + ++ +V L +IA++EGL++ + + + +RRAI + +
Sbjct: 152 CAVFRFSPLPKDAVVARLRYIAEQEGLKVTQDALEAIFDFTQGDMRRAITALQIA 206
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 117/228 (51%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK LD VI + LK V D PHL+F GP G+GK + +AL ++FG
Sbjct: 4 IWTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
WK N +EL+ SD D +++ IK+ AK R
Sbjct: 63 ---------DDWK-----------------ENFLELNASDERGID--IIRNNIKDFAKIR 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P K GFK++ L+E D+L+ EAQ +LRRTME + ++ R I CN SSK+ I+SRC
Sbjct: 95 P---SNKLGFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRC 151
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R +E + + L IAK E + + E S+ +R+AI
Sbjct: 152 VVLRFRPLDKEAMERKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAI 199
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 27/240 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V H+DI + + + + PHLL YGPPG+GK + I+AL RQ++GP
Sbjct: 48 WVEKYRPNTLDDVSGHKDILATINRFIEQNKLPHLLLYGPPGTGKTSTILALARQIYGPK 107
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-----ELSPSDAGFQDRYVVQEVIKEM 117
+ V D G + ++ T +S + + PS A F
Sbjct: 108 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSASTQQGPSGAKF------------- 154
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A+
Sbjct: 155 ---------GLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPAL 205
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
SRC R + +E I ++++ + +E + + L E S +RRA+ + C
Sbjct: 206 LSRCTRFRFSPLKKEDIRRLVDHVIAEEKVNIAPDAVESLVELSKGDMRRALNVLQACHA 265
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 125/244 (51%), Gaps = 34/244 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYG-- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
S+N+ + L++++ D G VV+E IK A +
Sbjct: 105 ----------------SKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 138
Query: 122 -----PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
P G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A
Sbjct: 139 IFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPA 198
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+ SRC R + E+ I ++++ + +KE +Q+ L + S +RRA+ + C
Sbjct: 199 LLSRCTRFRFSPLKEQDIKRLVDTVIEKEQVQIQPDAIDSLVKLSKGDMRRALNVLQACH 258
Query: 237 VQQL 240
+
Sbjct: 259 ASSM 262
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+TLD V H DI LK + D P+LLF G G GK T +A+ ++++G
Sbjct: 15 IWVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W+ ++ +EL+ SD D VV++ IK A++
Sbjct: 74 ---------DSWQ-----------------SHFLELNASDERGID--VVRDQIKNFARHD 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P G F+++ L+E D L+ +AQ +LRRTME++S R I+ CN SSK+ + I+SRC
Sbjct: 106 P----GAVDFQIIFLDEADSLTSDAQAALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R ++ + ++++A +EG++ L ++ +R+AI + + V
Sbjct: 162 AVFRFGPIPDDAVAGYVQYVADEEGIETTDDGIEALVYAADGDMRKAINALQAAAV 217
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 35/230 (15%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
PI K FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPI----KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIIS 149
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R + + + L++IAK+EG+++ + E S +R+AI
Sbjct: 150 RCAVFRFSPMPRSLMAERLKYIAKREGIEVGEDALDLIYELSEGDMRKAI 199
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 32/239 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H DI + K + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 36 WVEKYRPVTLDDVVSHHDITSTIVKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGND 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E IK A+ R
Sbjct: 96 YRK---------------------------QILELNASDDRGID--VVREQIKNFAETRT 126
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K GFK+++L+E D ++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 127 LFAK---GFKLIILDEADMMTTAAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 183
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
R + ++ K L + + EG++L L + S +RRA+ + C R
Sbjct: 184 RFRFSPLPITEVEKRLNSVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAYDR 242
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRP+TLD V Q++ ++K + E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYG-- 67
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ RN+ LEL + D G VV+ IKE A R
Sbjct: 68 --------------SNYRNMVLELN----------ASDDRGID---VVRNQIKEFASTRQ 100
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 101 IFSK---GFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCT 157
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +E+ I + + + KE L+L L S+ +RRA+ + R
Sbjct: 158 RFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAAR 211
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP++LD + ++I + L+ + + D PHLLF GP G GK T A+ RQV+G
Sbjct: 17 IWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------EDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++E + IA EG+++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDEAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAA 217
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI +++ + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 30 WVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARRLYGAN 89
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+K +EL+ SD D VV++ IK A+ R
Sbjct: 90 YKK---------------------------QILELNASDDRGID--VVRDQIKGFAETRG 120
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K GFK+++L+E D +++ AQ +LRR +E+Y+ + R + CN +K+T AI+SRC
Sbjct: 121 VFAK---GFKLIILDEADMMTQAAQAALRRVIEQYTRNVRFCIICNYVNKITPAIQSRCT 177
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ K L+ + + EG+++ L + S +RRA+ + C
Sbjct: 178 RFRFSPLPVSEVEKRLQTVIENEGVKVSPEGKEALLKLSRGDMRRALNVLQAC 230
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 29/245 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++LD V H+DI + +L TE PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 40 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 97
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +N+ LEL + D G VV++ I++ A +
Sbjct: 98 --------------SQYQNMILELN----------ASDDRGID---VVRQQIQDFASTQS 130
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K K+++L+E D ++++AQ +LRR +EKY+ S R L CN +K+ A++SRC
Sbjct: 131 LSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCT 190
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + + L+ + K EGL + SN +R+A+ ++ + +
Sbjct: 191 RFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNILQSTHMASQQI 250
Query: 243 TMPSV 247
T +V
Sbjct: 251 TEEAV 255
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLLFYGPPG+GK + I+A +Q++
Sbjct: 24 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLYK-- 81
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
D E ++ +EL+ SD DR +V+ I A
Sbjct: 82 --------------------DKEFNSMV----LELNASD----DRGIGIVRGPILSFAST 113
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I K+GFK+++L+E D +++EAQ++LRR +EK++ + R L CN SK+ A++SR
Sbjct: 114 RTI---FKKGFKLVILDEADAMTQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSR 170
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R T E +V L+ + + E + + L SN +RR++
Sbjct: 171 CTRFRFGPLTPELMVPRLKHVIESEKVDVSDDGMKALVTLSNGDMRRSL 219
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP+ D+V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 93
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I S
Sbjct: 94 TAPV---GKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIIS 150
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R + + + L IAK EG++L + E S +R+AI
Sbjct: 151 RCAVFRFSPMPRGLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAI 200
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 79 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 113 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 169
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 170 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRAL 216
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 124/240 (51%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL V HQDI + K + PHLLFYGPPG+GK + I+AL R+++ G
Sbjct: 44 WVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARRIY--G 101
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
AE + R + LEL + D G + VV+E IK A +
Sbjct: 102 AENM-------------RQMVLELN----------ASDDRGIE---VVREQIKTFASTKQ 135
Query: 123 IDTKGKR-------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I T G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N S K++
Sbjct: 136 IFTMGSSAGRAGIAAFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSP 195
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
A+ SRC R + E+ I +++ + ++E +++ L + S +RRA+ + C
Sbjct: 196 ALLSRCTRFRFSPLKEQDIRSLVDKVIEEENVKITPDAVESLVKLSRGDMRRALNVLQAC 255
>gi|443896109|dbj|GAC73453.1| replication factor C, subunit RFC4 [Pseudozyma antarctica T-34]
Length = 383
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 119/239 (49%), Gaps = 36/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D+V + LKK + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 31 WVEKYRPKTIDEVTAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGPE 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + VV+E IK AK
Sbjct: 91 LMKTRV--------------------------LELNASDE--RGITVVREKIKNFAKLAV 122
Query: 123 IDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
T K G FK+++L+E D ++++AQ +LRR ME+YS R L CN +++ E +
Sbjct: 123 --TNPKEGFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPL 180
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAEKSNRSLRRAILSFETC 235
SRC R S LE IA E + G L S+ LRRAI ++
Sbjct: 181 ASRCSKFRFRSLDTSSTKARLEMIANTEAVTFEDGEVLDTLIGTSDGDLRRAITYLQSA 239
>gi|302653321|ref|XP_003018488.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
gi|291182138|gb|EFE37843.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
Length = 416
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 3/238 (1%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSK 106
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ V D G + ++ T +S + V S+A V K++ P
Sbjct: 107 NMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIVGT---KQIFSTAP 163
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A+ SRC
Sbjct: 164 SSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 223
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
R + E+ I ++++ + + E +Q+ L + S +RRA+ + C +
Sbjct: 224 RFRFSPLKEKDIRRLVDTVIETEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSM 281
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRAL 217
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD +I H +I +KK + + PHLLFYGPPG+GK + I+A+ ++++G
Sbjct: 10 WVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKELYGAK 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K V +EL+ SDA D VV+ I A +R
Sbjct: 70 NLKKMV--------------------------LELNASDARGID--VVRNEILNFASSRS 101
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K GFKV++L+E D ++R+AQ +LRR MEK++ + R L CN K+ AI+SRC
Sbjct: 102 LHCK---GFKVIILDECDAMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCT 158
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + EQ++ + + ++EG+ + L + + +RR++
Sbjct: 159 RFRFAPLSVEQMMPRINHVVEEEGIDIDQNGMDLLLKMAEGDMRRSL 205
>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
Length = 390
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 123/242 (50%), Gaps = 38/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + K + + PHLL YGPPG+GK + I+AL R+++G
Sbjct: 44 WVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYGA- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R + LEL + D G VV+E IK A +
Sbjct: 103 --------------ANMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 135
Query: 123 I--------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I G GFK+++L+E D ++ AQ +LRR MEKY+ + R + N S K++
Sbjct: 136 IFSLGGASRSGNGMAGFKLIILDEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLS 195
Query: 175 EAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
A+ SRC R SP +E ++VL + + ++E +Q+ L + S +RRA+ +
Sbjct: 196 PALLSRCTRFRF-SPLKEGDIRVLVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQ 254
Query: 234 TC 235
C
Sbjct: 255 AC 256
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + K+E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVKEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 79 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 113 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 169
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 170 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRAL 216
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + K+E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVKEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 125/244 (51%), Gaps = 34/244 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + V PHLL YGPPG+GK + I+AL R+++
Sbjct: 47 WVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIY--- 103
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
GS+N+ + L++++ D G VV+E IK A +
Sbjct: 104 ---------------GSKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 138
Query: 122 -----PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
P G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A
Sbjct: 139 IFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPA 198
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+ SRC R + E+ I ++++ + +KE +Q+ L + S +RRA+ + C
Sbjct: 199 LLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDAIDSLVKLSKGDMRRALNVLQACH 258
Query: 237 VQQL 240
+
Sbjct: 259 ASSM 262
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 33/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD ++ + I LK+ V E+ P+L+F GP G GK T +AL R++ G
Sbjct: 8 WVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG-- 65
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SDA D V+ IK + +P
Sbjct: 66 --------EYWR-----------------QNFLELNASDARGID--TVRTSIKNFCRLKP 98
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ F+++ L+EVD ++++AQH+LRR ME Y+ + IL CN SSK+ + I+SRC
Sbjct: 99 VGAP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCA 154
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R QI+K LE+IA+KE L+ + + + LR+AI
Sbjct: 155 IFRFLPLKGHQIIKRLEYIAEKENLEYEAHALETIVYFAEGDLRKAI 201
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V +DI + L+ + + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGFDYRIIFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + + ++ IA+ E ++L L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAVREQVKDIAETEEIELTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|358367795|dbj|GAA84413.1| DNA replication factor C subunit Rfc2 [Aspergillus kawachii IFO
4308]
Length = 389
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 20/234 (8%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 37 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPS 96
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ ++ +++A R I + + + +L+ S G + Y+ Q
Sbjct: 97 LYRSRI----LELNASDERGIGIVRDKIKNFARAQLTHS-TGLSEEYLAQYPCPP----- 146
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME+YS R L CN +++ E + SRC
Sbjct: 147 ---------FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRC 197
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + + LE IAK E L+L G +L S +RRAI ++
Sbjct: 198 SKFRFKALDNSAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSA 251
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++LD +I H+DI + + + PHLLFYGPPG+GK + I+A R+++
Sbjct: 10 WVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYS-- 67
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--VVQEVIKEMAKN 120
TT ++ +EL+ SD DR VV+ I A
Sbjct: 68 ------------------------TTQFNSMVLELNASD----DRGIGVVRNQILSFAST 99
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I KG FK+++L+E D ++++AQ++LRR MEK+ + R L CN +K+ AI+SR
Sbjct: 100 RTIFNKG---FKLIILDEADAMTKDAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSR 156
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R T ++I LE+I K E L + L +N +R+A+
Sbjct: 157 CTRFRFGPLTTDKISSRLEYIIKVEQLNVTEDGLNALVTLANGDMRKAL 205
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 20 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 77
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 78 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 111
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I KRGFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 112 I---FKRGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 168
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 169 RFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRAL 215
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 34/244 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + V PHLL YGPPG+GK + I+AL R+++
Sbjct: 47 WVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIY--- 103
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
GS+N+ + L++++ D G VV+E IK A +
Sbjct: 104 ---------------GSKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 138
Query: 122 -----PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
P G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A
Sbjct: 139 IFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPA 198
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+ SRC R + E+ I ++++ + +KE +Q+ L S +RRA+ + C
Sbjct: 199 LLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDAVDSLVTLSKGDMRRALNVLQACH 258
Query: 237 VQQL 240
+
Sbjct: 259 ASSM 262
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 117/228 (51%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD+++ +DI L+ V + PHLLF G G GK T +AL R+ FG
Sbjct: 7 IWIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W+ N E++ SD D VV+ IKE A+
Sbjct: 66 ---------DSWQ-----------------TNFREMNASDERGID--VVRNQIKEFARTS 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 PL---AGATFKILFLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E +++ IA EGL + G + ++ +R+AI
Sbjct: 155 AIYRFRPLDREAVIEETRRIAAAEGLTVTEGALDAIVYVASGDMRKAI 202
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPK+LD ++ +DI + LKK V E++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 5 VLWAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYG 64
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +EL+ SD D V++ +K+ A+
Sbjct: 65 ENYRQY---------------------------FLELNASDERGID--VIRNKVKDFART 95
Query: 121 -RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P D FK ++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ + I+S
Sbjct: 96 VTPQDVP----FKTVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIDPIQS 151
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R R +E ++ LEFIAK E ++ + E ++ +R+AI
Sbjct: 152 RTALFRFYPLKKEDVISRLEFIAKNEKVEYDPKALDTIYEITSGDMRKAI 201
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 125/235 (53%), Gaps = 34/235 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ L +++ HQDI +++ + + PHLLFYGPPG+GK + I+A ++++GP
Sbjct: 41 WVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGTGKTSTILACAKKIYGP- 99
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K N+ +++A R ID VV+E IK A +
Sbjct: 100 ----KFRNQLLELNASDERGID-------------------------VVREQIKNFASTK 130
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I GFK+++L+E D ++ AQ++LRR +EKY+ + R + CN +K++ AI+SRC
Sbjct: 131 QI---FNSGFKLVILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYVNKISLAIQSRC 187
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++I L+++ K E + + L + ++ +R+ + + C
Sbjct: 188 TRFRFQPLSSKEICLKLDYVIKNENINISEKGKAELVKLADGDMRKGLNILQACH 242
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + ++AL ++++GP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPD 94
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++++ +++A R I + + + ++L+ G++D+Y
Sbjct: 95 M----IKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYKDKYPCPP--------- 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 142 ---------FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + + LE IA+KEG+ L G L + S LR+AI ++
Sbjct: 193 SKFRFKSLDQSNAKRRLEEIAEKEGVALEDGAVDALIKCSEGDLRKAITFLQSA 246
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + K+E + L L ++ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVIKEEKVDLSEDGMKALVTLASGDMRRAL 217
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 79 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 113 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 169
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 170 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRAL 216
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 34/235 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD V+ H+DI L+K ++ PH+LFYGPPG+GK + I+A +++GP
Sbjct: 22 WVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILACANRIYGPN 81
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
N+ +++A R ID VV+E IK A +
Sbjct: 82 -----FRNQVMELNASDDRGID-------------------------VVREQIKSFASTK 111
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + FK+++L+E D ++ AQ++LRR +EKY+ + R + CN +K+ AI+SRC
Sbjct: 112 QIFSS---AFKLIILDETDAMTLAAQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRC 168
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +I K ++ +A+KE + T L S +R+A+ + C
Sbjct: 169 TRFRFQPLPITEIEKKVDEVAEKENCTISPEGKTALLRLSKGDMRKALNILQACH 223
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP++LD + ++I + L+ + + D PHLLF GP G GK T A+ RQV+G
Sbjct: 17 IWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------DDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + IA EG+++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDAAVAAQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 79 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 113 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 169
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 170 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRAL 216
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+T D V DI + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ I + + IA E +++ L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAIAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 122/229 (53%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
MLWV+KYRP++LD ++ + + + LK+ V +++ PHLLF GPPG+GK T AL +FG
Sbjct: 7 MLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG 66
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +E + R I+ V++E +KE A++
Sbjct: 67 ENYRQYMLELNA----SDERGIN-------------------------VIREKVKEFARS 97
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R T + FK+++L+E D ++ +AQ +LRR ME YS+ R IL N SK+ + I+SR
Sbjct: 98 R---TPPEIPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSR 154
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +++ +++ L +IA+ EG+ + E S +R+AI
Sbjct: 155 CAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAI 203
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 15/234 (6%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI + K ++ PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 80 WVEKYRPATLDDVVSHKDIVSTIDKFISLNRLPHLLFYGPPGTGKTSTILAVARKIYGGT 139
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
++ G E +++ + N +EL+ SD D VV++ IK A R
Sbjct: 140 GNSIR---------GGVSGKGKEGSSMRN-NVLELNASDDRGID--VVRDQIKNFASTRM 187
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I + G+K+++L+E D ++ AQ++LRR +E+Y+ + R + CN +++ A++SRC
Sbjct: 188 IFSS---GYKLIILDEADMMTTTAQNALRRVIEQYTKNVRFCIICNYVNRIIPAVQSRCT 244
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R ++ + ++ + E + L L + S +RRA+ + C
Sbjct: 245 RFRFGPLETTEVDRRIQHVVDAESVNLTQDGREALLKLSKGDMRRALNVLQACH 298
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 37/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V +++ + L + CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAK- 119
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100
Query: 120 ----NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
N+P + +K++VL+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 101 AVGTNKPKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R TEE + + +I K+EG+ L + + L+ S LRRAI ++
Sbjct: 161 PLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQS 219
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP++LD + + I + L+ + + D PHLLF GP G+GK T A+ RQV+G
Sbjct: 17 IWIEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQVYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------DDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ EAQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDEADSLTDEAQAALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + IA EG+++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDAAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAA 217
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 33/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L +V DI + L+ V + D PHLLF GP G GK T MA+ R+++G
Sbjct: 13 IWIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYG- 71
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 72 ---------DDWR-----------------ENFLELNASDERGID--VVRDRIKNFART- 102
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME+++ + R IL CN S+++ + I+SRC
Sbjct: 103 ---SFGGYDYRVIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRC 159
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E + + +E IA +EG+++ L ++ +R+AI
Sbjct: 160 AVFRFGPLPETAVAEYVERIAGEEGIEITDDGVDALVYAADGDMRKAI 207
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I H+DI ++K + E PHLLFYGPPG+GK + I+A RQ++
Sbjct: 16 WVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGKTSTILACARQLYK-- 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D VV+ I A R
Sbjct: 74 --------------------DKEFNSMV----LELNASDDRGID--VVRGPILSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 108 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +Q++ LE + ++E + + + S+ +RR++
Sbjct: 165 RFRFGPLSPDQMIPRLEHVIQQESIDITPDGMKAIVTLSSGDMRRSL 211
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + ++AL +++FGP
Sbjct: 36 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGPE 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K+ A+
Sbjct: 96 LMKSRV--------------------------LELNASDE--RGISIVREKVKDFARMQL 127
Query: 120 -NRPIDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
N P K K FK+++L+E D ++++AQ +LRRTME YS R L CN +++ +
Sbjct: 128 TNPPPGYKSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIID 187
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R S +E LE IA KEG+ L G L + S LR+AI ++
Sbjct: 188 PLASRCSKFRFKSLDQENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQSA 247
>gi|396471841|ref|XP_003838965.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
gi|312215534|emb|CBX95486.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
Length = 434
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 124/236 (52%), Gaps = 12/236 (5%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL +V + Q L + + + PH+LFYGPPG+GK + I+AL +Q++GP
Sbjct: 35 WVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPD 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS---------DAGFQDRYVVQEV 113
K +V + G + ++ + + L+PS AG +
Sbjct: 95 LLKSRVLELNASDERGISIVRQKVKDFAR-QQLSLAPSYSVMVEDKAAAGRGEDEAAGTG 153
Query: 114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
K+MA+ R D FK++VL+E D ++++AQ +LRRTME YS R L CN +++
Sbjct: 154 EKKMARYR--DVYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRVTRFCLVCNYVTRI 211
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + SRC R S + V+ + IA+ EG+ L G A L + LR+AI
Sbjct: 212 IDPLASRCSKFRFKSLDQGNAVRRVADIARLEGVALDPGVAEELVRVAEGDLRKAI 267
>gi|440492768|gb|ELQ75308.1| Replication factor C, subunit RFC3 [Trachipleistophora hominis]
Length = 353
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 141/238 (59%), Gaps = 11/238 (4%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
ML KY+PKTLD + ++ A NLK T PHL+ +G PG GK+TL+ A + +FG
Sbjct: 1 MLLDQKYQPKTLDDIQFNRKHASNLKNF-TLSTIPHLIVHGRPGCGKRTLVYAFINHLFG 59
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++ K +++ ++ S + + ++ + S +VE+ PSD F+D+ V+Q+VIK+MA+
Sbjct: 60 ---KQPKTHHRSIEV-VSSSDKKITISYVESEEYVEICPSDYNFKDKDVIQDVIKKMAET 115
Query: 121 RPI-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+PI TK ++ K++V+ + +K++++AQ +LRRT+E Y + R+I+ CN ++ + +
Sbjct: 116 KPILSLISRTKSEK-LKLIVITKAEKMTKDAQAALRRTVETYVDNFRMIMICNDTTGIID 174
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
I+SR L +R+ + + ++K L I E + ++ S+ + RRA+ +
Sbjct: 175 PIKSRMLCLRVTVASSDVLLKTLSEINDVECIGSDEKTLKQIISDSHGNFRRALFFLQ 232
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+T D V DI + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ I + + IA E +++ L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAIAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + K+E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVIKEEKVDVSEDGMKALVTLSSGDMRRAL 217
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 33/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L +V DI + L+ V + D PHLLF GP G GK T MA+ R+++G
Sbjct: 13 IWIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYG- 71
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 72 ---------DDWR-----------------DNFLELNASDERGID--VVRDRIKNFART- 102
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME+++ + R IL CN S+++ + I+SRC
Sbjct: 103 ---SFGGYDYRVIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRC 159
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E + + +E IA +EG+++ L ++ +R+AI
Sbjct: 160 AVFRFGPLPETAVAEYVEQIAGEEGIEITDDGVDALVYAADGDMRKAI 207
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+T D V DI + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ I + + IA E +++ L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAIAEQVRDIATAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I L++ V D PHL+F GP G+GK T A+ R+V+
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQAIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE+ I + IA+ EG+++ L ++ +R+AI + V
Sbjct: 165 AVFRFTELTEDAIEAQVREIAENEGIEVTDDGVDALVYAADGDMRKAINGLQAAAV 220
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD +I H+DI +++ ++E PHLLFYGPPG+GK + I+A RQ++
Sbjct: 16 WVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACARQLY--- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
EK E ++ +EL+ SD D VV+ I A R
Sbjct: 73 KEK-------------------EFNSMV----LELNASDDRGID--VVRGPILSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 108 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +Q++ LE + ++E + + + S +RR++
Sbjct: 165 RFRFGPLSPDQMIPRLEHVIQQENIDITPDGMKGIVTLSTGDMRRSL 211
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V ++I + L+ + + D PHLLF GP G GK T A+ R+++G
Sbjct: 17 IWIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------EDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++E + ++ IA E +++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDEAVSGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD V+ H +I Q + + + +Q PHLLFYGPPG+GK + I+A+ ++++G
Sbjct: 16 WVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKKIYG-- 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
WK RN+ +EL+ SD D VV++ IK A+ R
Sbjct: 74 --------GNWK-----RNV------------LELNASDDRGID--VVRDQIKSFAQTR- 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
T GFK+++L+E D ++++AQ +LRR +E Y+ + R + CN +K+T AI SRC
Sbjct: 106 --TLFSDGFKLIILDEADLMTQQAQGALRRIIEHYTPTTRFCIICNYVNKITPAIMSRCT 163
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + + K L + + E +Q+ L + +RRA+ + C
Sbjct: 164 RFRFSPLPYAHLDKRLVEVIENEAVQIDDDAKKALLNLTKGDMRRALNILQACH 217
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD++I H+DI + K V E PHLLFYGPPG+GK + I+A+ +Q++ P
Sbjct: 18 WVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVAKQIYSPK 77
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
V +EL+ SD DR +V+ I A
Sbjct: 78 EFNSMV--------------------------LELNASD----DRGIGIVRGQILSFAST 107
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I K G+K+++L+E D ++R+AQ++LRR +EK++ + R + CN SK+ A++SR
Sbjct: 108 RTI---FKSGYKIVILDEADAMTRDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSR 164
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +Q+V L+ + ++E + L +N +R+A+
Sbjct: 165 CTRFRFGPLGTDQMVPRLQHVIQQEQCNVTEDGMKALVTLANGDMRKAL 213
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL +++ ++I + LK V +Q PHLLF G PG GK T + L + ++G
Sbjct: 5 WVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
W+ N +EL+ SD D V++ +K+ A+ +P
Sbjct: 63 --------DDWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I G FKV+ L+E D L+ +AQ++LRRTMEKYS CR IL CN SK+ I+SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E ++ + +I++ E + + + + S +R+++ +T
Sbjct: 153 IFRFSPLKTEDVLDYMNYISENENITIEKSGSDAIIYVSEGDMRKSVNVLQTA 205
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 31/228 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 40 WVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS- 98
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ N +++A R ID VV++ I++ A R
Sbjct: 99 ----QYGNMILELNASDERGID-------------------------VVRQQIQDFASAR 129
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ K+ K+++L+E D ++++AQ +LRR +EK++ S R L CN +K+ A++SRC
Sbjct: 130 SLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRC 189
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + L+ I + EGL + G T L SN +R+A+
Sbjct: 190 TRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKAL 237
>gi|357467569|ref|XP_003604069.1| Replication factor C subunit [Medicago truncatula]
gi|355493117|gb|AES74320.1| Replication factor C subunit [Medicago truncatula]
Length = 800
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 136/236 (57%), Gaps = 7/236 (2%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFG 60
LW KY+PK L I ++D A LK LV C H +F GPP GK+++I A+LR+VFG
Sbjct: 421 LWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFG 480
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+V E K + + G +L+L S +HVE++ S+A ++ V+ E+ KE
Sbjct: 481 ADGVQVTEEYKDFNL-KGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKE-TYG 538
Query: 121 RPIDTK---GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+ I++ + ++L E +KLS E+ ++ +EKY +L CC+ S++ + I
Sbjct: 539 KVINSSLPCSPENCQAIILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDESRL-QPI 597
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+S C +R++SP+ +QIVK+LE+I ++EG++L + +S +LR+AI S E
Sbjct: 598 QSYCTTVRLSSPSTQQIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLE 653
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 31/228 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 40 WVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS- 98
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ N +++A R ID VV++ I++ A R
Sbjct: 99 ----QYGNMILELNASDERGID-------------------------VVRQQIQDFASAR 129
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ K+ K+++L+E D ++++AQ +LRR +EK++ S R L CN +K+ A++SRC
Sbjct: 130 SLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRC 189
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + L+ I + EGL + G T L SN +R+A+
Sbjct: 190 TRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKAL 237
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+ L+ V+ H DI + L+ V D PHLLF GP G+GK +++ ++++G
Sbjct: 11 IWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYG- 69
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 70 ---------DDWQ-----------------DNFLELNASDERGID--VVRDRIKDFARS- 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 101 ---SFGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRC 157
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R ++ + L IA+ EGL+ L ++ +RRAI + +
Sbjct: 158 AVFRFAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAA 211
>gi|408397619|gb|EKJ76759.1| hypothetical protein FPSE_02945 [Fusarium pseudograminearum CS3096]
Length = 390
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 124/242 (51%), Gaps = 38/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + K + + PHLL YGPPG+GK + I+AL R+++G
Sbjct: 44 WVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYGA- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R + LEL + D G VV+E IK A +
Sbjct: 103 --------------ANMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 135
Query: 123 IDTKGK--------RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I + G GFK+++L+E D ++ AQ +LRR MEKY+ + R + N S K++
Sbjct: 136 IFSLGGASRSGNAMAGFKLIILDEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLS 195
Query: 175 EAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
A+ SRC R SP +E ++VL + + ++E +Q+ L + S +RRA+ +
Sbjct: 196 PALLSRCTRFRF-SPLKEGDIRVLVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQ 254
Query: 234 TC 235
C
Sbjct: 255 AC 256
>gi|349580660|dbj|GAA25819.1| K7_Rfc3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 340
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 73 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +E I + + + E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
Length = 389
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 20/234 (8%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 37 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPS 96
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ ++ +++A R I + + + +L+ S G + Y+ Q
Sbjct: 97 LYRSRI----LELNASDERGIGIVREKIKNFARAQLTHS-TGLGEEYLAQYPCPP----- 146
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME+YS R L CN +++ E + SRC
Sbjct: 147 ---------FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRC 197
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + + LE IAK E L+L G +L S +RRAI ++
Sbjct: 198 SKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSA 251
>gi|6324039|ref|NP_014109.1| replication factor C subunit 3 [Saccharomyces cerevisiae S288c]
gi|585844|sp|P38629.1|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 40 kDa subunit
gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
gi|285814375|tpg|DAA10269.1| TPA: replication factor C subunit 3 [Saccharomyces cerevisiae
S288c]
gi|392297062|gb|EIW08163.1| Rfc3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 340
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 73 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +E I + + + E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>gi|441432263|ref|YP_007354305.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|371945082|gb|AEX62903.1| putative replication factor C small subunit [Moumouvirus Monve]
gi|440383343|gb|AGC01869.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 391
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 134/244 (54%), Gaps = 8/244 (3%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M +KYRPK + + +++ L L + +D PH++ GPPG+GKKTL+ L ++
Sbjct: 1 MFLFEKYRPKNFREFLFNKNTLDQLNYLASNEDIPHIIISGPPGAGKKTLVKFFLEALYD 60
Query: 61 PGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
V V +K + I+ S ++E+ S H+ + P+ D+Y++QE+IK+ A
Sbjct: 61 SD---VNVLSKMKYNINGSSTKKEIEI--FQSNYHIIIEPTSTN-HDKYILQEIIKQYAM 114
Query: 120 NRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
++ + K R FK +V+ ++ L+ +Q +LRRTME Y+ +CR ++ N+ SK+ + +R
Sbjct: 115 HKSFNIFKTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFVMVSNNLSKIFDPLR 174
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
SRC ++ P+ + I V+ I+ E ++L + + + +++RAI ++ R+
Sbjct: 175 SRCRTFCVSQPSIDDIKNVVTHISLMENIKLENDDMNFILNNCDNNIKRAIWILDSKRLN 234
Query: 239 QLRF 242
F
Sbjct: 235 SDPF 238
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 33/228 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD +I H +I +KK + + PHLLFYGPPG+GK + I+A+ ++++G
Sbjct: 10 WVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKELYGAK 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
K V +EL+ SDA G VV+ I A +R
Sbjct: 70 NLKKMV--------------------------LELNASDARGIN---VVRNEILNFASSR 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ KG FKV++L+E D ++R+AQ +LRR MEK++ + R L CN K+ AI+SRC
Sbjct: 101 SLHCKG---FKVIILDECDAMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRC 157
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + EQ++ + + ++EG+ + L + + +RR++
Sbjct: 158 TRFRFAPLSVEQMMPRINHVVEEEGIDIDQNGMDLLLKMAEGDMRRSL 205
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 73 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +E I + + + E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
Length = 354
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 30/235 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD ++ HQ+I + +K+ V PHLL +GPPG+GK + I+A RQ++ PG
Sbjct: 30 WVEKYRPKTLDDLVAHQEIIETIKRFVKMNALPHLLLHGPPGTGKTSTILACARQMYPPG 89
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ V +EL+ SDA D VV+E IK+ +R
Sbjct: 90 QLRQYV--------------------------LELNASDARGID--VVRECIKQFVSSRS 121
Query: 123 I--DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ + G K+++L+E D ++ +Q +LRR +E+YS++ R L CN +SK+ A++SR
Sbjct: 122 MFSGSLGTNMPKLVILDEADNMTSVSQFALRRVIEQYSSNARFCLICNYASKIIPALQSR 181
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
C R + + ++++AK EG+++ L +R+ + + ++C
Sbjct: 182 CTKFRFAPLKDAEARMRVDYVAKCEGVKISEDGMLALLRTGEGDMRKVLNTLQSC 236
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 34/236 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD V H++I +K+L E PHLL YGPPG+GK + I+A+ RQ++G
Sbjct: 38 WVEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPPGTGKTSTILAVARQIYGNS 97
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
N+ LEL S + G VV++ I++ A R
Sbjct: 98 LA----------------NMTLELN----------SSDERGIG---VVRQEIQDFASTRS 128
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ + FK+++L+E D ++++AQ +LRR +EKY+ + R L CN SK+ A++SRC
Sbjct: 129 VFSN---KFKLIILDECDAMTQDAQAALRRVIEKYTRNARFCLICNYVSKIIPALQSRCT 185
Query: 183 NIRINSPTEEQIVKV-LEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R +P Q V+ L+++A E ++L G + + + +RR++ ++C +
Sbjct: 186 KFRF-APLSPQFVRERLQYVADIEKMKLGPGGLDAVVQLGSGDMRRSLNILQSCHM 240
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 30/234 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK L ++ H+DI +++ V E PH+LFYGPPG+GK + I+A R+VFG
Sbjct: 17 WVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFGET 76
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
S+++ +EL+ SD D V + I A +
Sbjct: 77 ---------------------------SNSSVLELNASDDRGID--VARGRILNFASTKR 107
Query: 123 IDTK-GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I + G FK+++L+E D ++ +AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 108 IAIQAGTASFKLIILDEADAMTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRC 167
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R EQI+ L+ + K+E L++ A L + +RR + ++C
Sbjct: 168 TRFRFAPLASEQILPRLQAVVKEESLEMSPDGAKALLTLAKGDMRRILNILQSC 221
>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
gi|365763611|gb|EHN05138.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 73 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +E I + + + E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 79 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 113 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 169
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + +E + L L S+ +RRA+
Sbjct: 170 RFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRAL 216
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLLFYGPPG+GK + I+A ++++
Sbjct: 138 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKRLYK-- 195
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 196 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 229
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 230 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 286
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 287 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 333
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI ++K + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 33 WVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGKD 92
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E IK A+ R
Sbjct: 93 YRK---------------------------QILELNASDDRGID--VVREQIKNFAETRT 123
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K G+K+++L+E D ++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 124 LFLK---GYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 180
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++ + L + + EG++L L + S +RRA+ + C
Sbjct: 181 RFRFSPLPITEVERRLSGVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACH 234
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 29/246 (11%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+KYRP++LD V H+DI + +L TE PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 33 LWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG- 91
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A N+ LEL + D G VV++ I++ A +
Sbjct: 92 ---------------AQYHNMILELN----------ASDDRGID---VVRQQIQDFASTQ 123
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ K K+++L+E D ++++AQ +LRR +EKY+ S R L CN +K+ A++SRC
Sbjct: 124 SLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRC 183
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
R + + L+ + E L + + L SN +R+A+ ++ + +
Sbjct: 184 TRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQ 243
Query: 242 FTMPSV 247
T +V
Sbjct: 244 ITEEAV 249
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I H+DI +++ ++E PHLLFYGPPG+GK + I+A RQ++
Sbjct: 16 WVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACARQLYR-- 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D VV+ I A R
Sbjct: 74 --------------------DKEFNSMV----LELNASDDRGID--VVRGPILSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 108 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +Q+V LE + ++E + + + S+ +RR++
Sbjct: 165 RFRFGPLSPDQMVPRLEHVIQQESIDVTPDGMKAIVTLSSGDMRRSL 211
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+T D V DI + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + + + IA E +++ L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD V + LKK ++ + PH+LFYGPPG+GK + I+AL +++FGP
Sbjct: 27 WVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKELFGPE 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K A+
Sbjct: 87 LMKTRV--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYLCPPYKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R S ++ L+++A++EG+++ +G + + S LRRAI
Sbjct: 179 PLASRCSKFRFKSLDSSNALQRLKYVAEEEGVKVKAGSLETILDISAGDLRRAI 232
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+T D V DI + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + + + IA E +++ L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD+V DI ++K V E PHLLFYGPPG+GK + I+AL ++++G
Sbjct: 12 WVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIYG-- 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ RN+ LEL + D G VV+ IKE A
Sbjct: 70 --------------SNYRNMVLELN----------ASDDRGID---VVRNQIKEFASTMQ 102
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ+SLRR +EKY+ + R + N + K+ A+ SRC
Sbjct: 103 IFSK---GFKLIILDEADAMTSTAQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCT 159
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++E + + + KE L++ S L + +R+A+ + C+
Sbjct: 160 RFRFSPISQEAVNTTIATVITKEKLKISSDAIESLCTLARGDMRKALNVLQACK 213
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 42 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY--- 98
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
++K + GS ++L + D G + +V+ I A R
Sbjct: 99 ------KDKEF----GSMVLELN------------ASDDRGIE---IVRGPILSFASTRT 133
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 134 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 190
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + L L S+ +RRA+
Sbjct: 191 RFRFGPLTPELMVPRLEHVIEEEKVDLSEDGMKALVTLSSGDMRRAL 237
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+T D V DI + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + + + IA E +++ L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|336258765|ref|XP_003344190.1| hypothetical protein SMAC_08123 [Sordaria macrospora k-hell]
gi|380095124|emb|CCC07626.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 389
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 37/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 45 WVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R + LEL + D G VV+E IK A +
Sbjct: 103 -------------TANMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDTKGKR-------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I T G GFK+++L+E D ++ AQ +LRR MEKY+A+ R + N S K++
Sbjct: 137 IFTLGSSASRSGLAGFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSP 196
Query: 176 AIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R SP +E+ ++VL + + ++E +Q+ L + S +RRA+ +
Sbjct: 197 ALLSRCTRFRF-SPLKEKDIRVLVDKVIEEENVQIMPDATDALVKLSKGDMRRALNVLQA 255
Query: 235 CR 236
C
Sbjct: 256 CH 257
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ V HQDI + K V PHLLFYGPPG+GK + I+AL R+++GP
Sbjct: 47 WVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGP- 105
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
R + LEL + D G + VV+E IK A +
Sbjct: 106 --------------KNMRQMVLELN----------ASDDRGIE---VVREQIKTFASTKQ 138
Query: 123 I-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
I T +K+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A+
Sbjct: 139 IFSMNSATVSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPAL 198
Query: 178 RSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC R SP +E ++VL + + +E +Q+ + L S +RRA+ + C
Sbjct: 199 LSRCTRFRF-SPLKESDIRVLVDKVIMEENVQINAEATDALVRLSKGDMRRALNVLQACH 257
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + D PH+LFYGPPG+GK + I+AL +++FGP
Sbjct: 25 WVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTSTILALTKELFGPE 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K A+
Sbjct: 85 LTKSRV--------------------------LELNASDE--RGISIVREKVKNFARLTV 116
Query: 120 NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ FK+++L+E D ++ +AQ +LRRTME YS+ R L CN +++ +
Sbjct: 117 SKPSKNDLEKYPCPPFKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYITRIID 176
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R S E + L+++AK+E + G ++ S+ LR+AI
Sbjct: 177 PLASRCSKFRFKSLDESNAMDRLQYVAKQESVICEDGALEKILIVSSGDLRKAI 230
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPKTLD+++ ++I LK+ V E++ PHLLF GPPG+GK T L +FG
Sbjct: 11 LLWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG 70
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +E + R ID V++ +KE A+
Sbjct: 71 ENYRQYMLELNA----SDERGID-------------------------VIRSKVKEFART 101
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R FK+++L+E D ++ +AQ +LRR ME Y+A+ R IL N SK+ E I+SR
Sbjct: 102 R---VAANIPFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSR 158
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +E ++ L++IA++E +++ + + S +RRAI
Sbjct: 159 CAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAI 207
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 126/236 (53%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V+ H++I LK V+ D H+LF GP G+GK T A+ R+++G
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ + +EL+ SD D VV++ IK A+
Sbjct: 74 ---------EDWR-----------------EHFLELNASDERGID--VVRDRIKNFART- 104
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 105 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + IA +EG++L L ++ +R+AI + V
Sbjct: 162 AVFRFSPLADDAVAEEIRNIAAEEGIELTEDGLDALVYAADGDMRKAINGLQAASV 217
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 37/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + L+K + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 20 WVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + VV+E IK A+ P
Sbjct: 80 LFKSRV--------------------------LELNASDE--RGISVVREKIKTFARETP 111
Query: 123 -----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
+ + GK +K+++L+E D ++++AQ +LRR ME YS R L CN +++
Sbjct: 112 RHNPGVASDGKEYPCPPYKLIILDEADSMTQDAQSALRRIMETYSRITRFCLVCNYVTRI 171
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
E + SRC R + +E IA+ EG+Q G + + + LR+AI +
Sbjct: 172 IEPVASRCSKFRFRPLEQSSSQARMEMIAENEGVQADPGVLELILQLAGGDLRKAITYLQ 231
Query: 234 TCR 236
T +
Sbjct: 232 TAQ 234
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+T D V DI + L+ + D PHLLF GP G GK T A+ R ++G
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 75 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKNFARS- 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 106 ---SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + + + IA E +++ L + +RRAI S +
Sbjct: 163 AVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 79 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 113 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 169
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 170 RFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRAL 216
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP TL +VI ++I L++ V D P+LLF G G GK T A+ R+V+G
Sbjct: 17 IWVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV+ IKE A+
Sbjct: 76 ---------EDWR-----------------DNFLELNASDDRGID--VVRGRIKEFARA- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S++ R IL CN SSK+ + I+SRC
Sbjct: 107 ---SFGGYSYRIIFLDEADSLTSDAQSALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + IA EG+++ G L ++ +RRA+ S + V
Sbjct: 164 AVFRFSPISDAAVGERIREIAHIEGIEITDGGVEALVYAADGDMRRAVNSLQAAAV 219
>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 398
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 130/254 (51%), Gaps = 38/254 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + + PHLL YGPPG+GK + I+AL RQ++G
Sbjct: 45 WVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V+N R + LEL + D G VV+E IK A +
Sbjct: 103 -----VKN--------VRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDT---KGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I + G+ G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K+T
Sbjct: 137 IFSMTPGGQAGSKLGAFKLIILDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLT 196
Query: 175 EAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
A+ SRC R SP +EQ ++VL + + +KE +++ L S +RRA+ +
Sbjct: 197 PALLSRCTRFRF-SPLKEQDIRVLVDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQ 255
Query: 234 TCRVQQLRFTMPSV 247
C + + V
Sbjct: 256 ACHASSMPLPLRDV 269
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + ++AL ++++GP
Sbjct: 34 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELYGPE 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I + + ++L+ A ++ RY V
Sbjct: 94 MMKSRV----LELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPP--------- 140
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 141 ---------FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + + LE IA+ EG+QL G L + S LR+AI ++
Sbjct: 192 SKFRFKSLDQGNAKRRLEDIAQNEGVQLEDGAVDALIKCSEGDLRKAITFLQSA 245
>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 398
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 130/254 (51%), Gaps = 38/254 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + + PHLL YGPPG+GK + I+AL RQ++G
Sbjct: 45 WVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V+N R + LEL + D G VV+E IK A +
Sbjct: 103 -----VKN--------VRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDT---KGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I + G+ G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K+T
Sbjct: 137 IFSMTPGGQAGSNLGAFKLIILDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLT 196
Query: 175 EAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
A+ SRC R SP +EQ ++VL + + +KE +++ L S +RRA+ +
Sbjct: 197 PALLSRCTRFRF-SPLKEQDIRVLVDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQ 255
Query: 234 TCRVQQLRFTMPSV 247
C + + V
Sbjct: 256 ACHASSMPLPLRDV 269
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD +I H +I ++K + + PHLLFYGPPG+GK + I+A+ +Q++ P
Sbjct: 12 WVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPK 71
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV--VQEVIKEMAKN 120
V +EL+ SD DR + V+ I A
Sbjct: 72 EFNSMV--------------------------LELNASD----DRGIGIVRGSILNFAST 101
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I K GFK+++L+E D ++ +AQ++LRR +EK++ + R CN SK+ A++SR
Sbjct: 102 RTI---FKSGFKLVILDEADAMTNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSR 158
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +QIV LEF+ ++E + + L + +RR I
Sbjct: 159 CTRFRFGPLDNQQIVPRLEFVVREENVDMTEDGKKALITLAKGDMRRVI 207
>gi|350635059|gb|EHA23421.1| hypothetical protein ASPNIDRAFT_47138 [Aspergillus niger ATCC 1015]
Length = 758
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 20/234 (8%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 406 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPS 465
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ ++ +++A R I + + + +L+ S G + Y+ Q
Sbjct: 466 LYRSRI----LELNASDERGIGIVREKIKNFARAQLTHS-TGLGEEYLAQYPCPP----- 515
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME+YS R L CN +++ E + SRC
Sbjct: 516 ---------FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRC 566
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + + LE IAK E L+L G +L S +RRAI ++
Sbjct: 567 SKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSA 620
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 37/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + L+K + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 20 WVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + VV+E IK A+ P
Sbjct: 80 LFKSRV--------------------------LELNASDE--RGISVVREKIKTFARETP 111
Query: 123 -----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
+ + GK +K+++L+E D ++++AQ +LRR ME YS R L CN +++
Sbjct: 112 RHNPGVASDGKEYPCPPYKLIILDEADSMTQDAQSALRRIMETYSRITRFCLVCNYVTRI 171
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
E + SRC R + +E IA+ EG+Q G + + + LR+AI +
Sbjct: 172 IEPVASRCSKFRFRPLEQSSSQARMEMIAENEGVQADPGVLELILQLAGGDLRKAITYLQ 231
Query: 234 TCR 236
T +
Sbjct: 232 TAQ 234
>gi|164656026|ref|XP_001729141.1| hypothetical protein MGL_3608 [Malassezia globosa CBS 7966]
gi|159103031|gb|EDP41927.1| hypothetical protein MGL_3608 [Malassezia globosa CBS 7966]
Length = 247
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 91/123 (73%)
Query: 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154
+E++PSDAG DR V+Q+++KE+A+ + +D R FK++V+NE D LSR+AQ +LRRTM
Sbjct: 1 MEITPSDAGSYDRLVIQDILKEIAQTQQVDQNAARRFKMVVINEADSLSRDAQAALRRTM 60
Query: 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214
EKY + R+ILC NS+S++ IRSRCL +R+ +P++E + +VL +AK+E QLP +
Sbjct: 61 EKYMRNMRMILCANSTSRIIAPIRSRCLLLRVGAPSDEDMSRVLRHVAKREKFQLPDRIS 120
Query: 215 TRL 217
+ +
Sbjct: 121 SEI 123
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L+ V+ HQDI + + + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 30 WVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGSD 89
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+K +EL+ SD D VV+E +K+ A+ R
Sbjct: 90 YKK---------------------------QILELNASDDRGID--VVREQVKQFAETRT 120
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K G+K+++L+E D ++++AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 121 LFSK---GYKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCT 177
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++ K + + + E +QL L + S +RRA+ + C
Sbjct: 178 RFRFSPLPIAEVEKQVNRVVEAENVQLTPEGKQALLKLSKGDMRRALNVLQACH 231
>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
1728]
gi|73920752|sp|Q9HI47.2|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK+L ++ + Q LK V +++ PHLLF G G+GK + +AL ++FG
Sbjct: 4 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+WK N VE++ S+ D V++ IK++A+ +
Sbjct: 63 ---------DSWK-----------------ENMVEMNASNENGID--VIRNKIKDIARIK 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P GFK+L L+E D+L+ EAQ +LRRTME YS + R I CN SSK+ I+SR
Sbjct: 95 P---SNPLGFKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRT 151
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R +E I + L+ IAK EG Q+ L E S +R+AI
Sbjct: 152 VVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAI 199
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 32/232 (13%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP +LD V+ H+DI ++K + PHLL YGPPG+GK + ++AL R+++GP
Sbjct: 11 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 70
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
K + +EL+ SD D VV+E IK A + +
Sbjct: 71 RK---------------------------HILELNASDDRGID--VVREQIKNFAMTKVL 101
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
+K GFK+++L+E D +++ AQ +LRR +E+++ + R + CN +K+T AI+SRC
Sbjct: 102 FSK---GFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTR 158
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E++I ++ + +KEG+ L L + S +RRA+ + C
Sbjct: 159 FRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQAC 210
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 23 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 80
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 81 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 114
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 115 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 171
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + +E + + L S+ +RRA+
Sbjct: 172 RFRFGPLTPELMVPRLEHVVGEENVDITEDGMKALITLSSGDMRRAL 218
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 129/254 (50%), Gaps = 38/254 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + + PHLL YGPPG+GK + I+AL RQ++G
Sbjct: 45 WVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V+N R + LEL + D G VV+E IK A +
Sbjct: 103 -----VKN--------VRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 I---DTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I G+ G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K+T
Sbjct: 137 IFSMTPGGQAGSKLGAFKLIILDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLT 196
Query: 175 EAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
A+ SRC R SP +EQ ++VL + + +KE +++ L S +RRA+ +
Sbjct: 197 PALLSRCTRFRF-SPLKEQDIRVLVDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQ 255
Query: 234 TCRVQQLRFTMPSV 247
C + + V
Sbjct: 256 ACHASSMPLPLRDV 269
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 33/212 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD +I HQ+I L +L+ Q PHLLFYGPPG+GK ++I+A R+++G
Sbjct: 30 WVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYGK- 88
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ GS ++L + D G VV+ IKE A +
Sbjct: 89 -------------NYGSMVLELN------------ASDDRGID---VVRNQIKEFAGTKK 120
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ ++ G K+++L+E D ++ +AQ SLRR +EKY+ + R L CN SK+ A++SRC
Sbjct: 121 LFSQ---GVKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCT 177
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLP-SGF 213
R E Q+ ++ IA+ E L + GF
Sbjct: 178 RFRFAPLNESQVSGRVKHIAQLEKLNMTEDGF 209
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|452836376|gb|EME38320.1| hypothetical protein DOTSEDRAFT_161207 [Dothistroma septosporum
NZE10]
Length = 410
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 42/260 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V L++ + + PH+LFYGPPG+GK + ++AL +Q++GP
Sbjct: 36 WVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPE 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K+ A+
Sbjct: 96 LMKTRV--------------------------LELNASDE--RGISIVREKVKDFARMQL 127
Query: 120 -NRPIDTKGKR--------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
N P G+ +K++VL+E D ++++AQ +LRRTME YS R L CN
Sbjct: 128 SNPPSGPAGEEYKKKYPCPPYKIIVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYV 187
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
+++ + + SRC R S E + +E IAK EG+++ G L S LR+AI
Sbjct: 188 TRIIDPLASRCSKFRFKSLDEGNAGRRIEDIAKLEGVKMEEGVTETLLRCSEGDLRKAIT 247
Query: 231 SFETCR--VQQLRFTMPSVD 248
++ V ++ PS D
Sbjct: 248 FLQSAARLVGAVQLGAPSGD 267
>gi|218185065|gb|EEC67492.1| hypothetical protein OsI_34758 [Oryza sativa Indica Group]
Length = 648
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 136/239 (56%), Gaps = 10/239 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIA-----QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLR 56
+W DKYRP L+ I ++D A Q VT Q+C H++F GP GK++++ AL+
Sbjct: 289 IWADKYRPNFLNDFICNKDAALELYNQGFTPQVTAQECNHIIFEGPTSVGKRSMVSALIW 348
Query: 57 QVFGPGAEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115
F K++ + K +++ +++ID+ + S++HVE++ +D +++V+ ++
Sbjct: 349 DAFATDNLKIEEQTKRFELKGEIAKHIDIRVKI--SSHHVEVNLADIHGYEKHVITTLLN 406
Query: 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
E + P +V+V+++ DKLS + QH + + +Y +++ CC+ +S + E
Sbjct: 407 ESIPS-PNSICSHANCRVIVVHDADKLSSDLQHYIGWFLGRYVGCNKIMFCCSDASNL-E 464
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+R C + + P+ ++I+KVLE+IA +E + LP A R+ S +LR+AI SFE
Sbjct: 465 AVRHLCKVVTLKPPSSDEIIKVLEYIAVQESIDLPRDIARRITMSSGNNLRQAIRSFEA 523
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 79 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 112
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 113 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 169
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 170 RFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRAL 216
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 25 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 82
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 83 --------------------DKEFNSMV----LELNASDDRGID--IVRGPILSFASTRT 116
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 117 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 173
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 174 RFRFGPLTPELMVPRLEHVIEEEKVDISEDGMKALITLSSGDMRRAL 220
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +I HQDI +++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 20 WVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 77
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 78 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 111
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 112 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 168
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 169 RFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALITLSSGDMRRAL 215
>gi|222613321|gb|EEE51453.1| hypothetical protein OsJ_32563 [Oryza sativa Japonica Group]
Length = 648
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 136/239 (56%), Gaps = 10/239 (4%)
Query: 2 LWVDKYRPKTLDQVIVHQDIA-----QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLR 56
+W DKYRP L+ I ++D A Q VT Q+C H++F GP GK++++ AL+
Sbjct: 289 IWADKYRPNFLNDFICNKDAALELYNQGFTPQVTAQECNHIIFEGPTSVGKRSMVSALIW 348
Query: 57 QVFGPGAEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115
F K++ + K +++ +++ID+ + S++HVE++ +D +++V+ ++
Sbjct: 349 DAFATDNLKIEEQTKRFELKGEIAKHIDIRVKI--SSHHVEVNLADIHGYEKHVITTLLN 406
Query: 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
E + P +V+V+++ DKLS + QH + + +Y +++ CC+ +S + E
Sbjct: 407 ESIPS-PNSICSHANCRVIVVHDADKLSSDLQHYIGWFLGRYVGCNKIMFCCSDASNL-E 464
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+R C + + P+ ++I+KVLE+IA +E + LP A R+ S +LR+AI SFE
Sbjct: 465 AVRHLCKVVTLKPPSSDEIIKVLEYIAVQESIDLPRDIARRITMSSGNNLRQAIRSFEA 523
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD + ++I + L+ + + D PHLLF GP G GK T A+ R+++G
Sbjct: 17 IWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------EDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++E + ++ IA E +++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
reilianum SRZ2]
Length = 385
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 118/240 (49%), Gaps = 38/240 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + LKK + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 31 WVEKYRPKTIDDVAAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGPE 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
K +V +EL+ SD G VV+E IK AK
Sbjct: 91 LMKTRV--------------------------LELNASDERGIS---VVREKIKNFAKLA 121
Query: 122 PIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
T K G FK+++L+E D ++++AQ +LRR ME+YS R L CN +++ E
Sbjct: 122 V--TNPKEGFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEP 179
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R S LE IA E + S L S+ LRRAI ++
Sbjct: 180 LASRCSKFRFRSLDTSSTKTRLEMIASAESVSFQDSTVLDTLISTSDGDLRRAITYLQSA 239
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPKTLD+++ ++I LK+ V E++ PHLLF GPPG+GK T L +FG
Sbjct: 11 LLWAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFG 70
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +E + R ID V++ +KE A+
Sbjct: 71 ENYRQYMLELNA----SDERGID-------------------------VIRSKVKEFART 101
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R FK+++L+E D ++ +AQ +LRR ME Y+A+ R IL N SK+ E I+SR
Sbjct: 102 R---VTANIPFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSR 158
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +E ++ L++IA +E +++ + + S +RRAI
Sbjct: 159 CAVFRFAPLKKEDVISRLKWIANQEKVEVDEEALEAIHDLSEGDMRRAI 207
>gi|402225443|gb|EJU05504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 35/241 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRPKT++++ + Q LKK + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 28 WIEKYRPKTMEEISAQEHTVQVLKKTLGSANLPHMLFYGPPGTGKTSTILALARQLFGPE 87
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + VV+E IK A+ P
Sbjct: 88 LFRSRV--------------------------LELNASDE--RGITVVREKIKNFARQTP 119
Query: 123 --IDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
D + +G +K+++L+E D ++++AQ +LRR ME Y+ R L CN +++ E
Sbjct: 120 RAADDEASKGYPCPPYKIIILDEADSMTQDAQAALRRVMETYAKITRFCLVCNYVTRIIE 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R ++ LE+IA E + + + L S LRR+I ++
Sbjct: 180 PLASRCSKFRFHTLDASSNRARLEYIATAEHVSVTPAVISTLISTSEGDLRRSITYLQSA 239
Query: 236 R 236
Sbjct: 240 H 240
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD+++ +DI + L+ V D H +F GP G GK T A+ R+++G
Sbjct: 17 VWIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTSATAIARELYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 ---------DDWR-----------------DNFLELNASDERGID--VVRDRIKNFART- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 107 ---SFGGYEYRIIFLDEADALTSDAQGALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R ++E + + + IA +EG++ L ++ +R+AI + + V
Sbjct: 164 AVFRFAPLSDEAVAEEMRHIAGEEGIEFTDDGLDALVYAADGDMRKAINALQAASV 219
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+WV+KYRP+ L+ V+ H DI + L+ V D PHLLF GP G+GK +++ ++++G
Sbjct: 11 IWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYG- 69
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 70 ---------DDWQ-----------------ENFLELNASDQRGID--VVRDRIKNFARA- 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++V+ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 101 ---SFGGYDYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRC 157
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + L IA +E L+ L ++ +RRAI + +
Sbjct: 158 AVFRFSQIDDDAVAAHLRDIAGREDLEYTEAGIDALVYAADGDMRRAINALQAA 211
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 122/239 (51%), Gaps = 37/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+T+ V+ + L++ ++ D P+LLFYGPPG+GK + I+A RQ+FG
Sbjct: 32 WVEKYRPRTVSDVVEQSEAVSVLQQCISGADLPNLLFYGPPGTGKTSTILAAARQLFG-- 89
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
D I +EL+ SD G Q V+++ +K A+
Sbjct: 90 -------------DYYRDRI------------LELNASDERGIQ---VIRDKVKTFAQLT 121
Query: 120 ---NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
RP D K FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ E
Sbjct: 122 ASGTRP-DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIEP 180
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R E I++ L FI KE ++ L E S +RRAI S ++C
Sbjct: 181 LTSRCTKFRFKPLNEAMILERLSFICGKENVECSDKTLAALVETSGGDMRRAITSLQSC 239
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 126/236 (53%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I LK+ V + D PHL+F GP G+GK T A+ R+++
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S++ R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T++ + IA +EG+++ L ++ +R+AI + V
Sbjct: 165 AVFRFTELTDDATEAQVREIAAEEGIEVTDDGVDALVFAADGDMRKAINGLQAAAV 220
>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
acidophilum]
Length = 330
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK+L ++ + Q LK V +++ PHLLF G G+GK + +AL ++FG
Sbjct: 16 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+WK N VE++ S+ D V++ IK++A+ +
Sbjct: 75 ---------DSWK-----------------ENMVEMNASNENGID--VIRNKIKDIARIK 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P GFK+L L+E D+L+ EAQ +LRRTME YS + R I CN SSK+ I+SR
Sbjct: 107 P---SNPLGFKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRT 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R +E I + L+ IAK EG Q+ L E S +R+AI
Sbjct: 164 VVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAI 211
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 124/241 (51%), Gaps = 37/241 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 34 WVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
K +V +EL+ SD G +V++ +K+ A+
Sbjct: 94 MIKSRV--------------------------LELNASDERGIS---IVRQKVKDFARMQ 124
Query: 120 --NRPIDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
N P K K FK+++L+E D ++++AQ +LRRTME YS R L CN +++
Sbjct: 125 LTNPPPSYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 184
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ + SRC R S + K LE IA+ EG+ L G L + S LR+AI ++
Sbjct: 185 DPLASRCSKFRFKSLDQSNAKKRLESIAEAEGVTLEDGAVDALIKCSEGDLRKAITFLQS 244
Query: 235 C 235
Sbjct: 245 A 245
>gi|350426161|ref|XP_003494352.1| PREDICTED: replication factor C subunit 4-like [Bombus impatiens]
Length = 357
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 127/237 (53%), Gaps = 35/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+T++ V+ ++ + L++ +T D P+LLFYGPPG+GK + I+A RQ+FG
Sbjct: 34 WVEKYRPRTVEDVVEQAEVVEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFG-- 91
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+L +EL+ SD G Q VV++ IK A+
Sbjct: 92 -------------------------SLYKERLLELNASDERGIQ---VVRDKIKSFAQLT 123
Query: 120 --NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
D KG FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ E +
Sbjct: 124 AGGMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHSTRFCLICNYVSRIIEPL 183
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R E++IV+ LE+I K+E L+ ++ E S LRRAI ++
Sbjct: 184 TSRCTKFRFKPLGEDKIVERLEYICKEEDLKATKPVLLKIVEASGGDLRRAITCLQS 240
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 125/235 (53%), Gaps = 44/235 (18%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPK+LD+++ ++I + LKK V E++ PHLLF GPPG+GK T +AL+R ++G
Sbjct: 5 ILWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYG 64
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK- 119
+ +EL+ SD D V++ +KE A+
Sbjct: 65 NNYRQY---------------------------FLELNASDERGID--VIRNKVKEFART 95
Query: 120 ----NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
N P FKV++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ E
Sbjct: 96 VASNNVP--------FKVILLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIE 147
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAI 229
I+SR R +E +V L IAK E ++ P G T + + + +R+AI
Sbjct: 148 PIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKGIET-IFDITQGDMRKAI 201
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD + ++I + L+ + + D PHLLF GP G GK T A+ R+++G
Sbjct: 17 IWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------EDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++E + ++ IA E +++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|190360157|sp|P0C7N7.1|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2
Length = 411
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 128/236 (54%), Gaps = 11/236 (4%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL +V + Q L + + + PH+LFYGPPG+GK + I+AL +Q++GP
Sbjct: 35 WVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPE 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V + G + ++ + + ++P+ Y V K+ + +
Sbjct: 95 LMKSRVLELNASDERGISIVRQKVKDFAR-QQLSVAPT-------YNVMTEDKDGGEAKM 146
Query: 123 IDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ + K FK++VL+E D ++++AQ +LRRTME YS R L CN +++ + + S
Sbjct: 147 VRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLAS 206
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
RC R S + V+ ++ IAK E ++L +G + L ++ LR+AI ++
Sbjct: 207 RCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSA 262
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 128/235 (54%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
++WV+KYRP +D +I +++ + +K+L+ + PH+LFYGPPG+GK T+ +A+ R+++G
Sbjct: 6 LIWVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYG 65
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
W+ N +EL+ SD + ++E +KE A+
Sbjct: 66 ----------DAWR-----------------ENVLELNASDE--RGITTIRERVKEFART 96
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK +K+++L+E D ++ +AQ +LRR ME Y+ R IL N S++ + I+SR
Sbjct: 97 APM---GKAPYKLIILDEADNMTSDAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSR 153
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
C R + ++ ++ L IA +EG+++ + + S +R+AI + +
Sbjct: 154 CAMFRFSPLPKDAVLGRLRDIASREGVKVTDEALEAIWDISQGDMRKAINTLQAA 208
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 128/235 (54%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
++WV+KYRP +D +I +++ + +K+ + + PH+LFYGPPG+GK T+ +A+ R+++G
Sbjct: 6 LIWVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYG 65
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
W+ N +EL+ SD + ++E +KE A+
Sbjct: 66 ----------DAWR-----------------ENVLELNASDE--RGITTIRERVKEFART 96
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK +K+++L+E D ++ +AQ +LRR ME Y+ R IL N S++ + I+SR
Sbjct: 97 APM---GKAPYKLVILDEADNMTSDAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSR 153
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
C R + ++ ++ L IA KEG+++ + + + S +R+AI + +
Sbjct: 154 CAMFRFSPLPKDAVLGRLREIASKEGVKVTNEALEAIWDVSQGDMRKAINTLQAA 208
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 36 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 93
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +++ I A R
Sbjct: 94 --------------------DKEFGSMV----LELNASDDRGID--IIRGPILSFASTRT 127
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 128 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 184
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 185 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 231
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +++ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IIRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 121/240 (50%), Gaps = 39/240 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V ++ + L + CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAA- 99
Query: 121 RPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ T K+G +K++VL+E D ++ +AQ++LRRTME YS R CN S++
Sbjct: 100 VAVGTNPKKGGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 159
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E + SRC R +EE + + +I +EGL L + + L+ S LRRAI ++
Sbjct: 160 EPLASRCAKFRFKPLSEEIMSSRILYICNEEGLHLDAEGLSTLSSISQGDLRRAITYLQS 219
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 32/235 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V + PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
RN S +EL+ SD D VV+ IK+ A R
Sbjct: 73 -----------------RNY--------SNMVLELNASDDRGID--VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R +E I + + + +E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKA 217
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD + ++I + L+ + + D PHLLF GP G GK T A+ R+++G
Sbjct: 17 IWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------EDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++E + ++ IA E +++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAA 217
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD+V DI ++K V E PHLLFYGPPG+GK + I AL ++++G
Sbjct: 12 WVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIYG-- 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ RN+ LEL + D G VV+ IKE A
Sbjct: 70 --------------SNYRNMVLELN----------ASDDRGID---VVRNQIKEFASTMQ 102
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ+SLRR +EKY+ + R + N + K+ A+ SRC
Sbjct: 103 IFSK---GFKLIILDEADAMTSTAQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCT 159
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++E + + + KE L++ S L + +R+A+ + C+
Sbjct: 160 RFRFSPISQEAVNTTIATVITKEQLKISSEAIESLCALARGDMRKALNVLQACK 213
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD +I H+DI + + + E PHLLFYGPPG+GK + I+A RQ++GP
Sbjct: 13 WVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQIYGPK 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ GS ++L + D G +V+ I A +
Sbjct: 73 -------------EFGSMVLELN------------ASDDRGIG---IVRGEILNFASTKS 104
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K GFK+++L+E D ++ +AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 105 I---FKSGFKLIILDEADAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCT 161
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + Q+ +E++ ++E L + L + + +R+A+
Sbjct: 162 RFRFGPLSLSQMSPRIEYVIEQERLTVTDDGKKALMDLAQGDMRKAL 208
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 32/235 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V + PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
RN S +EL+ SD D VV+ IK+ A R
Sbjct: 73 -----------------RNY--------SNMVLELNASDDRGID--VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R +E I + + + +E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKA 217
>gi|389749254|gb|EIM90431.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 379
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 36/241 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT++ V + I L+K +T + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 27 WVEKYRPKTIEDVSAQEHIVAVLEKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + +V+E IK A+ P
Sbjct: 87 NFRSRV--------------------------LELNASDE--RGIAIVREKIKNFARQTP 118
Query: 123 ----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + GK +K+++L+E D ++++AQ +LRR ME Y+ R L CN +++
Sbjct: 119 RAQAVSSDGKAYPCPPYKIIILDEADSMTQDAQAALRRIMETYAHITRFCLVCNYVTRII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E + SRC R + LE IA E L++ + L S LRRAI ++
Sbjct: 179 EPLASRCSKFRFKPLDDSSSTNRLEHIALSEQLRVKPDVFSALISTSGGDLRRAITYLQS 238
Query: 235 C 235
Sbjct: 239 A 239
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +++ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IIRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDVSEDGMKALVTLSSGDMRRAL 217
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +++ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IIRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP++LD ++ +DI + LK+ V +++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 7 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG 66
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +EL+ SD D V++ +KE A+
Sbjct: 67 DNYRQY---------------------------FLELNASDERGID--VIRNKVKEFART 97
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
G FKV++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ E I+SR
Sbjct: 98 V---AGGNVPFKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSR 154
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E +V L +IAK E ++ + + + +R+AI
Sbjct: 155 TALFRFYPLKKEDVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKAI 203
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 34/251 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD+V+ H+DI ++L+ + PHLLFYGPPG+GK T I A +FG
Sbjct: 20 WVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGK- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
++++ AN +E++ SD D VV++ ++E A
Sbjct: 79 -DRIR------------------------ANVLEMNASDDRGID--VVRQQVREFASTSS 111
Query: 123 IDTKGK------RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
FK+++L+E D++S +AQ +LRR +EKY+ + R + CN +K+ A
Sbjct: 112 FYFASAPAASTIAAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPA 171
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
++SRC R + ++ L+F+A++EG++ G SN LRR + + +
Sbjct: 172 LQSRCTRFRFAPVKKNAMLPRLKFVAQEEGVRFTDGGLVAAFRLSNGDLRRCLNTMQASA 231
Query: 237 VQQLRFTMPSV 247
+ T SV
Sbjct: 232 MSAGEITEESV 242
>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 327
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 32/232 (13%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP +LD V+ H+DI ++K + PHLL YGPPG+GK + ++AL R+++GP
Sbjct: 11 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAY 70
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
K + +EL+ SD D VV+E IK A + +
Sbjct: 71 RK---------------------------HILELNASDDRGID--VVREQIKNFAMTKVL 101
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
+K GFK+++L+E D +++ AQ +LRR +E+++ + R + CN +K+T AI+SRC
Sbjct: 102 FSK---GFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTR 158
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E++I ++ + +KEG+ L + + S +RRA+ + C
Sbjct: 159 FRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALNVLQAC 210
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H DI ++K + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 37 WVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGTE 96
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +E L++++ D G + VV+E IK A+ R
Sbjct: 97 YRKQILE-------------------LNASD-------DRGIE---VVREQIKNFAETRT 127
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +KG +K+++L+E D ++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 128 LFSKG---YKLIILDEADMMTTAAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 184
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++ K + + EG+++ + L + S +RRA+ + C
Sbjct: 185 RFRFSPLPIPEVEKRVNNVIDAEGVKITAEGKQALLKLSKGDMRRALNVLQACH 238
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 32/235 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H+DI ++K + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 42 WVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGKD 101
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E IK A+ R
Sbjct: 102 YRK---------------------------QILELNASDDRGID--VVREQIKNFAETRT 132
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K G+K+++L+E D ++ AQ +LRR +E+Y+ + R + CN +K+ A++SRC
Sbjct: 133 LFSK---GYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAVQSRCT 189
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + + EG+++ L + S +RRA+ + C
Sbjct: 190 RFRFSPLPVPEVERRINGVIETEGVKITGDGRKALLKLSKGDMRRALNVLQACHA 244
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVGISEDGMKALVTLSSGDMRRAL 217
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 124/246 (50%), Gaps = 23/246 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V + + LKK + + PH+LFYGPPG+GK + I+AL RQ++GP
Sbjct: 20 WVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALARQLYGPR 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V D G + + N L+ S+A KE +N P
Sbjct: 80 LFKSRVLELNASDDRG-----ISIVRQKVKNFARLAVSNAS-----------KEDLENYP 123
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+K+++L+E D ++ +AQ +LRRT+E YS R L CN +++ + + SRC
Sbjct: 124 CPP-----YKLIILDEADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCS 178
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + ++ + +I +KE L + L SN LR+AI ++ +L F
Sbjct: 179 KFRFGLLNNDNALQRIRYIVEKENLNVDEDVPETLLSMSNGDLRKAITFLQSA--SRLSF 236
Query: 243 TMPSVD 248
+ + D
Sbjct: 237 ALANPD 242
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 37/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V ++ + L + CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ K G FK++VL+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 101 AVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 160
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R +EE + + +I+++EGL L + + L+ S+ LRRAI ++
Sbjct: 161 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQS 219
>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V ++ ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 73 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ S+C
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R +E I + + + E L+L L E SN +RR + ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 33/246 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V+ + LK+ V E + P+L+F GP G GK T +AL +++ G
Sbjct: 31 WVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLG-- 88
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SDA D V+ IK + +
Sbjct: 89 --------EYWR-----------------QNFLELNASDARGID--TVRNDIKSFCRLKA 121
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ + F+++ L+EVD ++++AQH+LRR ME Y+ + IL CN SSK+ + I+SRC
Sbjct: 122 VGSP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCA 177
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R QI+K LE+IA+ EGL++ + + +RRA+ +
Sbjct: 178 IFRFVPVKGHQIIKRLEYIAQAEGLKIDIAAIESIVYFAEGDMRRAVNILQASSSAGEEV 237
Query: 243 TMPSVD 248
T SVD
Sbjct: 238 TEESVD 243
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V L+ + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRAL 217
>gi|359415519|ref|ZP_09207966.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
gi|358034122|gb|EHK02580.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
Length = 315
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +K+RP TL +V+ +I + L+ V E+ PH+LF GPPG+GK T +AL + ++G
Sbjct: 4 VWTEKHRPNTLSEVVGQNEITERLEAFVEEESIPHMLFSGPPGTGKTTCAVALAKDLYG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
WK N +E + S+ D VV+E IK+ A+ +
Sbjct: 63 ---------DEWK-----------------QNFMETNASEERGID--VVREKIKDFARTK 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I+ + +K++ L+E D L+ +AQ +LRRTME++S +CR I+ CN SSK+ + I+SRC
Sbjct: 95 AINAE----YKIIFLDEADSLTSDAQQALRRTMEQFSDNCRFIMSCNYSSKIIDPIQSRC 150
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R N E + ++ + + E + + S+ LRR +T +
Sbjct: 151 AVFRFNRLEEGDVKSYIQRLGESENFSISEDAVEAVMRVSDGDLRRVTNVLQTAAI 206
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 36/243 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPNTLDDVSGHQDILTTINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYG-- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
+ R + LEL + D G VV+E IK A +
Sbjct: 105 -------------TSNMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 138
Query: 122 -----PIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
P + G +K+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 139 IFSMAPSASTGSSLASYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLS 198
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R + E+ I +++ + +KE +Q+ + L + S +RRA+ +
Sbjct: 199 PALLSRCTRFRFSPLKEQDIRSLVDHVIEKEQVQIQPEAVSSLVKLSKGDMRRALNVLQA 258
Query: 235 CRV 237
C
Sbjct: 259 CHA 261
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRP+TLD V ++I ++K V E PHLLFYGPPG+GK ++I+AL R+++G
Sbjct: 10 WIEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYG-- 67
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
RN+ LEL + D G VV+ IKE A R
Sbjct: 68 --------------TNYRNMVLELN----------ASDDRGID---VVRNQIKEFASTRQ 100
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +EKY+ + R + N + K+T A+ SRC
Sbjct: 101 IFSK---GFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCT 157
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + I K + + E L+L T L S +RRA+
Sbjct: 158 RFRFQPLPTDAIEKRVNKVLILENLKLSREAFTALLRLSKGDMRRAL 204
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 124/241 (51%), Gaps = 37/241 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 34 WVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
K +V +EL+ SD G +V++ +K+ A+
Sbjct: 94 MIKSRV--------------------------LELNASDERGIS---IVRQKVKDFARMQ 124
Query: 120 --NRPIDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
N P K K FK+++L+E D ++++AQ +LRRTME YS R L CN +++
Sbjct: 125 LTNPPPHYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 184
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ + SRC R S + K LE IA+ EG+ L G L + S LR+AI ++
Sbjct: 185 DPLASRCSKFRFKSLDQGNAKKRLESIAEAEGVALEDGAVDTLIKCSEGDLRKAITYLQS 244
Query: 235 C 235
Sbjct: 245 A 245
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V + L++ + + PH+LFYGPPG+GK + I+AL +Q++GP
Sbjct: 35 WVEKYRPKSLDDVAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGPE 94
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I + + + ++L+ AG++++Y
Sbjct: 95 MMKSRV----LELNASDERGISIVREKVKNFARMQLTNPPAGYREKYPCPP--------- 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 142 ---------FKIIILDEADSMTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + +K LE IA E + L G L S LR+A+ ++
Sbjct: 193 SKFRFKSLDQGSAMKRLEEIAAAESVPLGDGAIDALVRCSEGDLRKAVTFLQSA 246
>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
gi|73920753|sp|Q977Z9.2|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK+L ++ + Q LK V +++ PHLLF G G+GK + +AL ++FG
Sbjct: 4 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++WK N +E++ S+ D V++ IK++A+ R
Sbjct: 63 ---------ESWK-----------------ENFIEMNASNENGID--VIRNKIKDIARIR 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P GFK+L L+E D+L+ EAQ +LRRTME YS + R + CN SSK+ I+SR
Sbjct: 95 P---SNPLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRT 151
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R +E I K L IAK EG + + E S +R+AI
Sbjct: 152 VVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAI 199
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD + H++I L + V + D PHL+F GP G+GK T A+ R+V+
Sbjct: 18 VWIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------EDDWQ-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S++ R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T++ I + IA +EG++L L ++ +R+ I + V
Sbjct: 165 AVFRFTELTDDAIEAQVREIATEEGIELTDDGVDALVYAADGDMRKGINGLQAAAV 220
>gi|410720678|ref|ZP_11360031.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
gi|410600389|gb|EKQ54917.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
Length = 321
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V+ I Q LK+ + E + P+L+F GP G GK T +AL + + G
Sbjct: 5 WVEKYRPQTLDEVVGQDHIIQRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+ WK N +EL+ SDA G + V++ IK + +
Sbjct: 63 --------EYWK-----------------QNFLELNASDARGIE---TVRKDIKSFCRLK 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+EVD ++++AQH+LRR ME Y+ + IL CN SSK+ + I+SRC
Sbjct: 95 AMGAP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRC 150
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R Q++K LE IAK E + G + + +RRA+
Sbjct: 151 AIFRFAPIKGHQVIKRLEVIAKAENVNYAPGTLESIVYFAEGDMRRAV 198
>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 330
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 32/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK+L ++ + Q LK V +++ PHLLF G G+GK + +AL ++FG
Sbjct: 16 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG- 74
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++WK N +E++ S+ D V++ IK++A+ R
Sbjct: 75 ---------ESWK-----------------ENFIEMNASNENGID--VIRNKIKDIARIR 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P GFK+L L+E D+L+ EAQ +LRRTME YS + R + CN SSK+ I+SR
Sbjct: 107 P---SNPLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRT 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ +R +E I K L IAK EG + + E S +R+AI
Sbjct: 164 VVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAI 211
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 35/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D ++ ++ +++ + D P++LFYGPPG+GK ++I A RQ+FG
Sbjct: 34 WVEKYRPKNVDDIVEQTEVVNVIRQAMKHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-- 91
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMA--K 119
++ +EL+ SD G Q VV+E IK A K
Sbjct: 92 -------------------------SMYKDRILELNASDDRGIQ---VVREKIKSFALRK 123
Query: 120 NRPIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
PI GK+ FK+++L+E D ++ AQ +LRR MEK + S R L CN S++ + I
Sbjct: 124 ANPIGPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSRIIKPI 183
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R ++E+ + LE+I +E L+ ++ E S LR+A++ ++
Sbjct: 184 ASRCTKFRFKPLSDEKSISRLEYICNEENLKADRSVLEKIVEASGGDLRQAVMCLQS 240
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD + +I + L+ + + D PHLLF GP G GK T A+ R+++G
Sbjct: 17 IWIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------EDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++E + ++ IA E +++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAA 217
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD +I H+DI + + K + E PHLLFYGPPG+GK + I+A R+++ G
Sbjct: 13 WVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPGTGKTSTILACARKLYTAG 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
V +E++ SD DR +V+ I A
Sbjct: 73 QFNSMV--------------------------LEMNASD----DRGIGIVRGQILNFAST 102
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
T K GFK+++L+E D ++ +AQ++LRR +EKY+ + R + CN SK+ A++SR
Sbjct: 103 ---GTLYKSGFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSR 159
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R + +QI+ LE I K+E L + L S +R+ +
Sbjct: 160 CTKFRFGPLSSDQILPRLETIIKEENLNVSEDGKEALIALSGGDMRKVL 208
>gi|340721765|ref|XP_003399285.1| PREDICTED: replication factor C subunit 4-like [Bombus terrestris]
Length = 357
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 127/237 (53%), Gaps = 35/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+T++ V+ ++ + L++ +T D P+LLFYGPPG+GK + I+A RQ+FG
Sbjct: 34 WVEKYRPRTVEDVVEQAEVVEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFG-- 91
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+L +EL+ SD G Q VV++ IK A+
Sbjct: 92 -------------------------SLYKERILELNASDERGIQ---VVRDKIKSFAQLT 123
Query: 120 --NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
D KG FK+++L+E D ++ AQ +LRRTMEK S + R L CN S++ E +
Sbjct: 124 AGGMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHTTRFCLICNYVSRIIEPL 183
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R E++IV+ LE+I K+E L+ ++ E S LRRAI ++
Sbjct: 184 TSRCTKFRFKPLGEDKIVERLEYICKEEDLKASKPVLLKIVEASGGDLRRAITCLQS 240
>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
Length = 389
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 125/242 (51%), Gaps = 37/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 45 WVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
EN R + LEL + D G VV+E IK A +
Sbjct: 103 -----AENM--------RQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDTKGKR-------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I + G GFK+++L+E D ++ AQ +LRR MEKY+ + R + N S K++
Sbjct: 137 IFSLGASTSKTGLAGFKLIILDEADAMTSTAQMALRRIMEKYTVNTRFCIIANYSHKLSP 196
Query: 176 AIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R SP +E+ ++VL + + +E +++ A L + S +RRA+ +
Sbjct: 197 ALLSRCTRFRF-SPLKERDIRVLVDKVIDEEHIKIKPEAADALVKLSKGDMRRALNVLQA 255
Query: 235 CR 236
C
Sbjct: 256 CH 257
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 116/236 (49%), Gaps = 31/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D++ + + LK + PHLLFYGPPG+GK + I+A+ RQ+FGP
Sbjct: 19 WVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVAVGRQLFGPD 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K + +EL+ SD DR VV+E +K A+
Sbjct: 79 FRK-------------------------NGRFLELNASD----DRGIKVVREKVKSFAQG 109
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
G FK++VL+E D ++ +AQ +LRR ME YS R L CN S++ E + SR
Sbjct: 110 AISSASGLPPFKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASR 169
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
C R + + + FIA +E + + L E S LR+AI ++ +
Sbjct: 170 CAKFRFAPLEKISMASRVRFIASEERVDVSDSVLESLLECSTGDLRKAINYLQSAK 225
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 33/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ L V H DI L+ V + D PHLLF GP G GK T MA+ R+V+G
Sbjct: 12 IWIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREVYG- 70
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD +R + +V+++ KN
Sbjct: 71 ---------DDWR-----------------ENFLELNASD----ERGI--DVVRDRIKNF 98
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME+++ + R IL CN S+++ + I+SRC
Sbjct: 99 ARASFGGYDYRIIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + + + IA++EG+++ L ++ +R+AI
Sbjct: 159 AVFRFGPLDGDSVAEYVRRIAEEEGIEITEDGIDALVYAADGDMRKAI 206
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 23 WVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 80
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 81 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 114
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 115 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 171
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 172 RFRFGPLTPELMVPRLEHVIEEEKVDVSEDGMKALITLSSGDMRRAL 218
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 118/239 (49%), Gaps = 37/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V +++ + L + DCPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ G FK+++L+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R +EE + + I +EGL L + L+ S LRRAI ++
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQS 219
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRP++ ++V+ +++ L++ V + PHLLFYGPPG+GK T+ + L R+++G
Sbjct: 4 LFWFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ W+ N +EL+ SD + V++E +KE A+
Sbjct: 64 ----------EYWR-----------------ENTLELNASDE--RGIGVIRERVKEFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ GK FK+++L+E D ++ +AQ +LRR ME Y+ + R IL N S++ + I SR
Sbjct: 95 APV---GKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R + + + L IA+ EG++L + E S +R+AI
Sbjct: 152 CAVFRFSPMPRHLMAERLREIARSEGVELKDDAIDLIYEISEGDMRKAI 200
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 37/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V ++ + L + CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ K G FK++VL+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 101 AVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 160
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R +EE + + +I+++EGL L + + L+ S+ LRRAI ++
Sbjct: 161 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQS 219
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 36/233 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D V+ ++ LKK +T D P+LLFYGPPG+GK + I+A+ ++FG
Sbjct: 39 WVEKYRPKVVDDVVHQDEVVSVLKKTLTGSDFPNLLFYGPPGTGKTSAILAIAHELFGRD 98
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN-- 120
K ++ LEL + D G Q V+++ +K A++
Sbjct: 99 LYKSRI---------------LELN----------ASDDRGIQ---VIRDKVKSFARHSA 130
Query: 121 ---RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
RP D K FK+++L+E D +++ AQ +LRRTMEK S S R L CN S++ E +
Sbjct: 131 SASRP-DGKPCPSFKIVILDEADSMTQAAQAALRRTMEKESTSTRFCLICNYISRIIEPL 189
Query: 178 RSRCLNIRINSPTEEQIVKV-LEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
SRC R P I++ LE+I ++E ++ R+ E S+ +R+AI
Sbjct: 190 TSRCSKFRFK-PLSSAILRTRLEYICREENVKCNEKAIDRIIETSDGDMRKAI 241
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 94
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I + + + ++L+ A ++ RY
Sbjct: 95 LIKTRV----LELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPP--------- 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 142 ---------FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + + LE IAK EG++L G L + S LR+AI ++
Sbjct: 193 SKFRFKSLDQGNAKRRLEEIAKNEGVELEEGAVDALIKCSEGDLRKAITFLQSA 246
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 29/245 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 37 WVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYG-- 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ N+ LEL + + G VV++ I++ A
Sbjct: 95 --------------SQYGNMILELN----------ASDERGIG---VVRQQIQDFASAHS 127
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K K+++L+E D ++++AQ +LRR +EKY+ S R L CN +K+ A++SRC
Sbjct: 128 LSFGAKPAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCT 187
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + + L+ I K EGL + G T L S+ +R+A+ ++ + +
Sbjct: 188 RFRFAPLDGSHVSERLQHIIKSEGLDVDEGGLTALVRLSSGDMRKALNILQSTHMASQQI 247
Query: 243 TMPSV 247
T +V
Sbjct: 248 TEEAV 252
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP ++D ++ H+DI ++K + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 41 WVEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIYGND 100
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E IK A+ R
Sbjct: 101 YRK---------------------------QILELNASDDRGID--VVREQIKNFAETRT 131
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K G+K+++L+E D ++ AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 132 LFLK---GYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 188
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + ++ + L + + EG++L L + S +RRA+ + C
Sbjct: 189 RFRFSPLPIPEVERRLNSVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACH 242
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 118/239 (49%), Gaps = 37/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V +++ + L + DCPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ G FK+++L+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R +EE + + I +EGL L + L+ S LRRAI ++
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLGGEALSTLSSISQGDLRRAITYLQS 219
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 124/246 (50%), Gaps = 31/246 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 39 WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 96
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
V+ N +++A R ID VV++ I++ A +
Sbjct: 97 ---VQYHNMILELNASDDRGID-------------------------VVRQQIQDFASTQ 128
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
K K+++L+E D ++++AQ +LRR +EKY+ + R L CN +K+ A++SRC
Sbjct: 129 SFSFDAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRC 188
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
R + L+ + + EGL +P + SN +R+A+ ++ + +
Sbjct: 189 TRFRFAPLDPIHVTDRLKHVIEAEGLDVPEPGLAAVVRLSNGDMRKALNILQSTHMASQQ 248
Query: 242 FTMPSV 247
T +V
Sbjct: 249 ITEEAV 254
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 36/240 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT++ V + L+K +T + PH+LFYGPPG+GK + I+AL RQ++GP
Sbjct: 25 WVEKYRPKTIEDVTAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLYGPD 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + +V+E IK+ A+ P
Sbjct: 85 NFRTRV--------------------------LELNASDE--RGITIVREKIKDFARQTP 116
Query: 123 -IDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ G +K+++L+E D ++++AQ +LRR ME Y+ R L CN +++
Sbjct: 117 RANVASSDGQTYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFCLVCNYVTRII 176
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E + SRC R LE+IA++EG+ + L S LRR+I +T
Sbjct: 177 EPLASRCSKFRFKPLDNSSTHGRLEYIAQQEGVNISQDTIKSLIACSGGDLRRSITYLQT 236
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD +I H++I ++ + E PHLLFYGPPG+GK + I+A + +F P
Sbjct: 7 WVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFSPA 66
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K V +EL+ SD D VV+ I+ A R
Sbjct: 67 EIKSMV--------------------------LELNASDDRGID--VVRGPIQSFASTRS 98
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I + GFK+++L+E D ++++AQ++LRR +E Y+ + R L CN SK+ A++SRC
Sbjct: 99 I---FRSGFKLIILDEADAMTKDAQNALRRVIETYTDNVRFCLICNYLSKIIPALQSRCT 155
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + EQ+ L+ I ++E + + + + + +RR++
Sbjct: 156 RFRFGPLSMEQMSVRLQHIIREENINITDSGMDSVVKLAQGDMRRSL 202
>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 334
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 32/232 (13%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP TLD V+ H+DI +++ + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 18 VEKYRPVTLDDVVSHKDITNTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAQY 77
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
K +EL+ SD D VV+E +K+ A+ R +
Sbjct: 78 RK---------------------------QILELNASDERGID--VVREQVKQFAETRTL 108
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
K GFK+++L+E D ++++AQ +LRR +E+Y+ + R + CN +K+T AI+SRC
Sbjct: 109 FAK---GFKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTR 165
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ K ++ + + E + L L + S +RRA+ + C
Sbjct: 166 FRFSPLPAIEVEKRVKTVVEAEQVSLTDDGKKALLKLSRGDMRRALNVLQAC 217
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD++I H+DI + + + E PH+LFYGPPG+GK + I+A R+++G
Sbjct: 38 WVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLYG-- 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+K R++ LEL + D G VV+E IK A R
Sbjct: 96 -DKF-------------RSMILELN----------ASDDRGID---VVREQIKNFASTRK 128
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ + G FK+++L+E D +++ AQ++LRR +E+Y+ + R L CN K+ A++SRC
Sbjct: 129 LFSSG---FKLIILDEADAMTQAAQNALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCT 185
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E QI + I +EG+ + + + S +RRA+
Sbjct: 186 RFRFAPLEEAQISDRITHIINQEGINITQAGRQAVLKLSQGDMRRAL 232
>gi|388852328|emb|CCF53943.1| probable RFC2-DNA replication factor C, 41 KD subunit [Ustilago
hordei]
Length = 383
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 118/239 (49%), Gaps = 36/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + LKK + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 31 WVEKYRPKTIDDVAAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGPE 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + VV+E IK AK
Sbjct: 91 LVKTRV--------------------------LELNASDE--RGITVVREKIKNFAKLAV 122
Query: 123 IDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
T K G FK+++L+E D ++++AQ +LRR ME+YS R L CN +++ E +
Sbjct: 123 --TNPKEGFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPL 180
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETC 235
SRC R S LE IA E + S L S+ LRRAI ++
Sbjct: 181 ASRCSKFRFRSLDTCSTKTRLEMIAGAESVSFQDSSVLDTLITTSDGDLRRAITYLQSA 239
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 28/235 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++++ V+ ++ LKK V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 33 WVEKYRPRSVEDVVEQSEVVAVLKKCVEGADLPNMLLYGPPGTGKTSTILAAGRQIFGD- 91
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++ +++A R I++ T + N +LS S+ R
Sbjct: 92 ----MYRDRILELNASDERGINVVRTKIK--NFAQLSASNV------------------R 127
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P D + FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ I SRC
Sbjct: 128 P-DGRPCPPFKIIILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 186
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR-LAEKSNRSLRRAILSFETC 235
R S E+QI++ L+ I + EG+Q+ + + + S +RRAI + ++C
Sbjct: 187 TKFRFKSLGEDQIIERLKLICQAEGVQMDGEESYKSIVRISGGDMRRAITTLQSC 241
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + ++I HQDI +++ + E PHLLFYGPPG+GK + I+A R+++
Sbjct: 12 WVEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTILACARRLYA-- 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV--VQEVIKEMAKN 120
D E ++ +EL+ SD DR + V+ + + A
Sbjct: 70 --------------------DREFNSMV----LELNASD----DRGIGIVRGPVLQFAST 101
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I KRGFK+++L+E D ++ +AQ++LRR MEK++ + R L CN SK+ AI+SR
Sbjct: 102 RTI---FKRGFKLVILDEADAMTGDAQNALRRVMEKFTENTRFCLICNYLSKIIPAIQSR 158
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +Q++ LE + ++E + + + + +N +RR +
Sbjct: 159 CTRFRFGPLGVDQMLPRLEHVIQEEKVDVTDDGKKAILQLANGDMRRVL 207
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL V HQDI + K V PHLLFYGPPG+GK + I+AL R+++ G
Sbjct: 45 WVEKYRPATLADVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARRIY--G 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
AE + R + LEL + D G VV+E IK A +
Sbjct: 103 AENM-------------RQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDT-------KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I + G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N S K++
Sbjct: 137 IFSMSASATRSGIANFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSP 196
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
A+ SRC R + E+ I +++ + ++E +++ L S +RRA+ + C
Sbjct: 197 ALLSRCTRFRFSPLKEQDIRGLIDKVIEEENVKIMPEATDSLVRLSKGDMRRALNVLQAC 256
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + ++AL ++++GP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELYGPE 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K+ A+
Sbjct: 95 MIKSRV--------------------------LELNASDE--RGISIVREKVKDFARMQL 126
Query: 120 NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
P + KR FK+++L+E D ++++AQ +LRRTME YS R L CN +++ +
Sbjct: 127 TNPTNEYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIID 186
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R S + K L IA+ EG+QL G L + S LR+AI ++
Sbjct: 187 PLASRCSKFRFKSLDQGNAKKRLGDIAENEGVQLEDGAVDALIKCSEGDLRKAITYLQSA 246
>gi|383860560|ref|XP_003705757.1| PREDICTED: replication factor C subunit 4-like [Megachile
rotundata]
Length = 357
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 129/237 (54%), Gaps = 35/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT++ V+ ++ + L++ ++ D P+LLFYGPPG+GK + I+A RQ+FG
Sbjct: 34 WVEKYRPKTVEDVVEQAEVVEVLRQCLSGSDFPNLLFYGPPGTGKTSTILAAARQLFG-- 91
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+L +EL+ SD G Q VV++ IK A+
Sbjct: 92 -------------------------SLYKDRILELNASDERGIQ---VVRDKIKTFAQLT 123
Query: 120 NRPIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+ GKR FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ E +
Sbjct: 124 AGGMRDDGKRCPPFKIIILDEADSMTAAAQAALRRTMEKESHSTRFCLICNYVSRIIEPL 183
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R EE+I++ LE+I+ +EGL+ ++ E S +RRAI ++
Sbjct: 184 TSRCTKFRFKPLGEEKIIERLEYISNEEGLKAGKPVLLKIVEASGGDMRRAITCLQS 240
>gi|440297885|gb|ELP90526.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 32/205 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP T+ V H+ I ++L++ ++ PHLLFYGPPG+GK T +A+++Q+ GP
Sbjct: 9 WVEKYRPTTISGVQGHEYILESLQQFISANQLPHLLFYGPPGTGKTTTALAIVKQICGPK 68
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+A +EL+ SD + VV+E IK A R
Sbjct: 69 ---------------------------YTALVLELNASDE--RGINVVREQIKSFASTRT 99
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ T K +VL+E DKL+++AQ++LRRT+E+YS +CR + CN + +T AI+SRC
Sbjct: 100 LYTNCT---KFIVLDESDKLTKDAQNALRRTLEQYSGNCRFVFICNEVNLITPAIQSRCA 156
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGL 207
R + E + K+++ I +E +
Sbjct: 157 KFRFGPLSPEALKKIMKHITDEEKM 181
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 35/207 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD ++ + I ++LKK V + P+L+F GP G GK T +AL++ + G
Sbjct: 5 WVEKYRPQTLDDIVGQKHIVESLKKYVDQGSMPNLMFTGPAGVGKTTSALALVKAILG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SDA G + V+ IK + +
Sbjct: 63 --------DYWR-----------------QNFLELNASDARGIE---TVRTNIKNFCRLK 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ F+++ L+EVD ++++AQH+LRR ME Y+ +C IL CN SSK+ + I+SRC
Sbjct: 95 PVGAP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTCSFILSCNYSSKIIDPIQSRC 150
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQ 208
R E+I L++IA+ EG +
Sbjct: 151 AIFRFAPIKAEEIADRLKYIAEAEGCE 177
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 21/227 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL +++FGP
Sbjct: 25 WVEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPPGTGKTSTILALTKELFGPE 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V + G + + N L+ S +DR +N P
Sbjct: 85 LTKTRVLELNASDERG-----ISIVREKVKNFARLTVSKPSAKDR-----------ENHP 128
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+K+++L+E D ++ +AQ +LRRTME YS+ R L CN +++ + + SRC
Sbjct: 129 CPP-----YKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCS 183
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R S + L++IAK+E + G + + S+ +RRAI
Sbjct: 184 KFRFKSLDAANALDRLKYIAKEESVDYEEGVLDDILKISSGDMRRAI 230
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 118/239 (49%), Gaps = 37/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V +++ + L + DCPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ G FK+++L+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R +EE + + I +EGL L + L+ S LRRAI ++
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQS 219
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 124/241 (51%), Gaps = 37/241 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 45 WVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS- 103
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
EN R + LEL + D G VV+E IK A +
Sbjct: 104 ------ENM--------RQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDTKGKR-------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I T G GFK+++L+E D ++ AQ +LRR MEKY+A+ R + N S K++
Sbjct: 137 IFTMGASASRTGIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSP 196
Query: 176 AIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R SP +EQ ++VL + + ++E +++ L S +RRA+ +
Sbjct: 197 ALLSRCTRFRF-SPLKEQDIRVLVDKVIEEETVKIIPEATEALVRLSKGDMRRALNVLQA 255
Query: 235 C 235
C
Sbjct: 256 C 256
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 33/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD ++ + I LK+ V E+ P+L+F GP G GK T +AL R++ G
Sbjct: 5 WVEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SDA D V+ IK + +P
Sbjct: 63 --------EYWR-----------------QNFLELNASDARGID--TVRTSIKNFCRLKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ F+++ L+EVD ++++AQH+LRR ME Y+ + IL CN SSK+ + I+SRC
Sbjct: 96 VGAP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCA 151
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R I+ LE+IA++EGL+ + + LR+AI
Sbjct: 152 IFRFLPLKGRHIISRLEYIAEQEGLEYEPQALDTVVYFAEGDLRKAI 198
>gi|340383712|ref|XP_003390360.1| PREDICTED: replication factor C subunit 3-like [Amphimedon
queenslandica]
Length = 312
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 83/109 (76%)
Query: 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
+VL EVD+L+++AQH+LRRTME Y+ +C LIL CNS+SK+ AI+SRCL +R+ +PT ++
Sbjct: 88 VVLTEVDRLTKDAQHALRRTMELYTGTCHLILVCNSTSKLIPAIKSRCLAVRVPAPTIDE 147
Query: 194 IVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
I VL+++ KE L +P A ++AEKS RSLR+AIL E CRVQQ F
Sbjct: 148 ICSVLQYVCHKESLTIPDTLAKKIAEKSERSLRKAILLCEVCRVQQYPF 196
>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
Length = 343
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ V+KYRP +LD+V QDI ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 23 LFRVEKYRPDSLDEVYGQQDIVDTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAREIYG 82
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P +N+ LEL + D G VV+ IK A
Sbjct: 83 PNY----------------KNMVLELN----------ASDDRGID---VVRNQIKNFAST 113
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
I +K GFK+++L+E D ++ AQ+SLRR +EKY+ + R + N S K+ A+ SR
Sbjct: 114 MQIFSK---GFKLIILDEADAMTSVAQNSLRRIIEKYTKNTRFCILANYSHKLNPALISR 170
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R E I + L+ + KE L + L + SN +RRA+
Sbjct: 171 CTRFRFQPIGESAIQERLKNVIIKENLSINEEAEKTLLKLSNGDMRRAL 219
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD+++ H+DI L++L+ PH L YGPPG+GK + I+A + ++G
Sbjct: 427 WVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMYG-- 484
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
AG +++ LEL + D G VV++ IKE A R
Sbjct: 485 --------------AGYKSMTLELN----------ASDDRGID---VVRDQIKEFAGTRR 517
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ +K G K+++L+E D ++++AQ +LRR +EKY+A+ R L CN ++K+ A++SRC
Sbjct: 518 LFSK---GIKLIILDEADMMTKDAQFALRRVIEKYTANARFCLICNYANKIIPALQSRCT 574
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +QI + I ++E + + + L E +RR +
Sbjct: 575 KFRFAPLAPDQIAGRVADIVRRENVAIGTKATDALLELGKGDMRRVL 621
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 116/234 (49%), Gaps = 37/234 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V +++ + L + DCPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ G FK+++L+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R +EE + + I +EGL L + L+ S LRRAI
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 214
>gi|269986185|gb|EEZ92497.1| Replication factor C [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 315
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 114/210 (54%), Gaps = 37/210 (17%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LW++KYRP++ D++I ++I + LK + +++ H++ GPPG GK T + L + VFGP
Sbjct: 3 LWIEKYRPQSFDEIIGQKEIVEKLKAMAEKKEIQHMILSGPPGVGKTTSAVVLAKAVFGP 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAK 119
W + N +EL+ SD DR V+Q +KE A+
Sbjct: 63 D----------W-----------------TQNFIELNASD----DRKLSVIQGKVKEFAR 91
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+PID FK+++ +E D L++EAQ +LRR ME+Y +CR + N S + E ++S
Sbjct: 92 TKPIDAP----FKIILFDEADSLTQEAQQALRRMMEEYINTCRFVFSVNYQSNIIEPLQS 147
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQL 209
RC +R ++E + K ++ IA+ E L +
Sbjct: 148 RCAILRFQPLSKEDVHKFIKRIAESEKLDI 177
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 122/235 (51%), Gaps = 34/235 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V +I ++K V E PHLLFYGPPG+GK + I+AL R+++GP
Sbjct: 10 WVEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYGP- 68
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +N +++A R ID VV+ IK+ A
Sbjct: 69 ----KYKNMVLELNASDDRGID-------------------------VVRNQIKDFASTM 99
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I +K GFK+++L+E D ++ AQ++LRR +EKY+ + R + N S K+ A+ SRC
Sbjct: 100 QIFSK---GFKLIILDEADAMTSVAQNALRRIIEKYTKNTRFCILANYSHKLNPALVSRC 156
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + I + L+ + KE + + L S +RRA+ ++C+
Sbjct: 157 TRFRFQPIHTDAIRERLKNVVIKEKITIKPDAIESLLTLSQGDMRRALNVLQSCK 211
>gi|340518366|gb|EGR48607.1| replication factor C, subunit 3 [Trichoderma reesei QM6a]
Length = 391
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 120/243 (49%), Gaps = 38/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 45 WVEKYRPVTLDDVSGHQDILATINKFVESNRLPHLLLYGPPGTGKTSTILALARRIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R + LEL + D G VV+E IK A +
Sbjct: 103 -------------TANMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDTKGK--------RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I T G GFK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 137 IFTMGGGAAKGNSIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLS 196
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT-RLAEKSNRSLRRAILSFE 233
A+ SRC R SP +E ++VL +E G A L + S +RRA+ +
Sbjct: 197 PALLSRCTRFRF-SPLKEGDIRVLVEKVVEEEGVKIQGEAVDALVKLSKGDMRRALNVLQ 255
Query: 234 TCR 236
C
Sbjct: 256 ACH 258
>gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
DSM 2375]
gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
gi|222435032|gb|EEE42197.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2375]
gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
Length = 315
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 33/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I + I L+K V E+ P+L+F GP G GK T +AL++ + G
Sbjct: 5 WVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SDA D V+ IK + +P
Sbjct: 63 --------EYWR-----------------QNFLELNASDARGID--TVRNDIKNFCRLKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ F+++ L+EVD ++++AQH+LRR ME Y+ + IL CN SSK+ + I+SRC
Sbjct: 96 VGAP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCA 151
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E+I L++I EG + G + + +R+A+
Sbjct: 152 IFRFGPIKGEEIANRLKYICTSEGFEYTDGGIEAIEYFAEGDMRKAV 198
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 30/234 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRP++LD + Q+I + K + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 7 WIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAREIYG-- 64
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +K N+ LEL + D G VV+ IK A R
Sbjct: 65 --------KNYK------NMVLELN----------ASDDRGID---VVRNQIKNFASTRQ 97
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +G FK+++L+E D ++ AQ+SLRR +EK++ +CR + N S K+ A+ SRC
Sbjct: 98 IFNQGN-SFKLIILDEADAMTNAAQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCT 156
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + E I + ++ + KE + + + L + S +RRA+ + C+
Sbjct: 157 RFRFHPIDTEAIRERIKVVITKEQVDIDAKAVDALVQLSKGDMRRALNVLQACK 210
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 33/228 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W +KYRPK LD V+ + + LKK V ++ P+LLF GP G GK T+ +AL R++ G
Sbjct: 4 IWTEKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILG- 62
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SDA D V+ IK + R
Sbjct: 63 ---------EYWQ-----------------QNFLELNASDARGID--TVRTEIKNFCRLR 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
PI+ F+++ L+EVD ++R+AQ +LRR ME Y+ + IL CN SSK+ E ++SRC
Sbjct: 95 PINAP----FRIVFLDEVDNMTRDAQQALRREMEMYAETATFILSCNYSSKIIEPVQSRC 150
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ R + I+K L++I +KE + + + LR+AI
Sbjct: 151 VVFRFLPLKSKDIIKRLKYICEKENVDYEEKALDAIVYFAEGDLRKAI 198
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD + + L++ + + PH+LFYGPPG+GK + I+AL +Q++GP
Sbjct: 35 WVEKYRPKSLDDIAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGPE 94
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I + + + ++L+ AG++D+Y
Sbjct: 95 MMKSRV----LELNASDERGISIVRDKVKNFARMQLTNPPAGYRDKYPCPP--------- 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 142 ---------FKIIILDEADSMTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + K LE IA E + + G L S LR+A+ ++
Sbjct: 193 SKFRFKSLDQGSAKKRLEEIATAESVPVDDGAIDALIRCSEGDLRKAVTFLQSA 246
>gi|406863129|gb|EKD16177.1| activator 1 subunit 3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 395
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 37/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ V HQDI + K V PHLL YGPPG+GK + I+AL RQ++
Sbjct: 48 WVEKYRPDTLEDVSGHQDILATITKFVDTNRLPHLLLYGPPGTGKTSTILALARQIY--- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
GS+N+ + +EL+ SD D VV+E IK A +
Sbjct: 105 ---------------GSKNMRQMV--------LELNASDDRGID--VVREQIKTFASTKQ 139
Query: 123 IDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I T K +K+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 140 IFTMNKTSTSASMPTYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSP 199
Query: 176 AIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R SP +E ++VL + + +E +Q+ L + S +RRA+ +
Sbjct: 200 ALLSRCTRFRF-SPLKEADIRVLVDKVITEENVQINESATDALVKLSKGDMRRALNVLQA 258
Query: 235 CR 236
C
Sbjct: 259 CH 260
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I LK V + D PH++F GP G GK A+ R+++G
Sbjct: 18 VWIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGVGKTASSQAIAREIYG- 76
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 77 ---------DDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYNYRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T++ I + IA EG+ + L ++ +R+AI + V
Sbjct: 165 AVFRFTELTDDAIEAQVREIADTEGIAVTDDGVDALVYAADGDMRKAINGLQAAAV 220
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 34/236 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP++L +++ ++I + L K V E++ PHLLF GPPG+GK T AL ++G
Sbjct: 8 LLWTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYG 67
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+N T + +EL+ SD D ++E +KE A++
Sbjct: 68 --------DNYTQYM-------------------LELNASDERGID--TIREKVKEFARS 98
Query: 121 R-PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+ P D FK+++L+E D ++ +AQ +LRR ME YSA+ R IL N SK+ + I+S
Sbjct: 99 KTPPDIP----FKIVLLDEADNMTADAQQALRRLMELYSANTRFILAANFPSKIIDPIQS 154
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
RC R ++ +V L +IA+KE ++ + + S +R+AI +T
Sbjct: 155 RCAFFRFTPLGKDDVVGRLRYIAEKENVKYDEDALEAIYDISEGDMRKAINILQTA 210
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 32/205 (15%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRPKTLD ++ ++I LKK V E++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 8 ILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 67
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+N T +EL+ SD D V++ +KE A+
Sbjct: 68 --------DNYT-------------------EYFLELNASDERGID--VIRNKVKEFART 98
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
G FKV++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ E I+SR
Sbjct: 99 V---IPGDIPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSR 155
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKE 205
R +E +V L +IAK E
Sbjct: 156 TALFRFYPLKKEDVVNRLIYIAKNE 180
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 134/249 (53%), Gaps = 30/249 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+++D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 33 WVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD- 91
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+++ +++A R I++ T + N +LS S R
Sbjct: 92 ----MYKDRILELNASDERGINVVRTKIK--NFSQLSASHV------------------R 127
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P D + FK+++L+E D ++ AQ +LRRTMEK S+S R L CN S++ I SRC
Sbjct: 128 P-DGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRC 186
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETC-RVQQ 239
R EE+I+ L+ I + E +++ P + T + + S LRRAI + ++C R+Q
Sbjct: 187 SKFRFKPLGEEKIIARLQHICELESVKIDPDAYKT-IVKISGGDLRRAITTLQSCFRLQG 245
Query: 240 LRFTMPSVD 248
T+ + D
Sbjct: 246 SEHTINTAD 254
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 125/234 (53%), Gaps = 27/234 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ +D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD- 90
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+++ +++A R I++ T + N +LS S R
Sbjct: 91 ----MFKDRILELNASDERGINVVRTKIK--NFSQLSASSV------------------R 126
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P D K FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ I SRC
Sbjct: 127 P-DGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 185
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E++++ L++I + EG+++ + + S LRRAI + ++C
Sbjct: 186 SKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSC 239
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 34 WVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++++ +++A R I + + ++L+ ++D+Y
Sbjct: 94 M----IKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPP--------- 140
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 141 ---------FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + + LE IA+ EG+ L G L + S LR+AI ++
Sbjct: 192 SKFRFKSLDQGNAKRRLESIAEAEGVTLEDGAIDALIKCSEGDLRKAITFLQSA 245
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 116/229 (50%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
++W++KYRP L ++ I + L V + PHLLF G G GK T +AL R+ F
Sbjct: 6 LIWIEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFF- 64
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+W + N EL+ SD D VV+ IK+ A+
Sbjct: 65 ---------KDSWHM-----------------NFRELNASDERGID--VVRNQIKQFART 96
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P+ G GFK+L L+E D L+ +AQ +LRRTME Y+++CR IL CN SS++ + I+SR
Sbjct: 97 SPL---GGAGFKILFLDEADALTPDAQAALRRTMESYASTCRFILSCNYSSRIIDPIQSR 153
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R S + E I K + IA+ E L + + E + +R+AI
Sbjct: 154 CAIYRFRSLSPEAITKEILRIAENEKLTITGEAIDAIIEIAQGDMRKAI 202
>gi|449299144|gb|EMC95158.1| hypothetical protein BAUCODRAFT_35150 [Baudoinia compniacensis UAMH
10762]
Length = 411
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 124/245 (50%), Gaps = 40/245 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++LD V L++++ + PH+LFYGPPG+GK + ++AL +Q++GP
Sbjct: 37 WVEKYRPRSLDDVTAQDHTVTVLRRMLQSSNLPHMLFYGPPGTGKTSTVLALAKQLYGPE 96
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K+ A+
Sbjct: 97 LIKSRV--------------------------LELNASDE--RGISIVREKVKDFARMQL 128
Query: 120 -NRPIDTKGKR--------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
N P G+ +K++VL+E D ++++AQ +LRRTME YS R L CN
Sbjct: 129 SNPPAGPAGEEYRKKYPCPPYKIVVLDEADSMTQDAQSALRRTMETYSKITRFCLICNYV 188
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
+++ + + SRC R S E K LE IAK E ++L G L S LR+AI
Sbjct: 189 TRIIDPLASRCSKFRFKSLDEANAGKRLEDIAKLENVRLQDGVIETLLRCSEGDLRKAIT 248
Query: 231 SFETC 235
++
Sbjct: 249 FLQSA 253
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 122/250 (48%), Gaps = 36/250 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V HQDI + + V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 42 WVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARRIYG-- 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
R + LEL + D G VV+E IK A +
Sbjct: 100 -------------TKNMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 133
Query: 122 -----PIDTKGK--RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
P T G GFK+++L+E D ++ AQ +LRR ME+Y+A+ R + N + K++
Sbjct: 134 IFNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTANTRFCVIANYTHKLS 193
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R + E I +++ + +KEG+++ L S +RRA+ +
Sbjct: 194 PALLSRCTRFRFSPLKEVDIRTLVDQVIEKEGVKIQPDAVDSLVTLSKGDMRRALNVLQA 253
Query: 235 CRVQQLRFTM 244
C + M
Sbjct: 254 CFASSIPLPM 263
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V+ H++I LK V+ D H+LF GP G+GK T A+ R+++G
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ + +EL+ SD D VV++ IK A+
Sbjct: 74 ---------DDWR-----------------EHFLELNASDERGID--VVRDRIKNFART- 104
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 105 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + IA +E ++L L ++ +R+AI + V
Sbjct: 162 AVFRFSPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASV 217
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 21/227 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK L++V LKK + + PH+LFYGPPG+GK + I+AL +++FGP
Sbjct: 25 WVEKYRPKKLEEVTAQDHAVTVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGPE 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V LEL S + + R V + KE + P
Sbjct: 85 LAKTRV---------------LELNA-SDERGISIVREKVKNFARLTVSKSSKEDLEKYP 128
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+K+++L+E D ++ +AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 129 CPP-----YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCS 183
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R S + L++I++KE +Q G ++ E S LRRAI
Sbjct: 184 KFRFKSLEATNALDRLKYISEKESVQYEEGTLEKILEISQGDLRRAI 230
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V+ H++I LK V+ D H+LF GP G+GK T A+ R+++G
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ + +EL+ SD D VV++ IK A+
Sbjct: 74 ---------DDWR-----------------EHFLELNASDERGID--VVRDRIKNFART- 104
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 105 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + IA +E ++L L ++ +R+AI + V
Sbjct: 162 AVFRFSPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASV 217
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 114/229 (49%), Gaps = 21/229 (9%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M WV+KYRPK LD+V + Q LKK + + PH+LFYGPPG+GK + I+A+ +Q++G
Sbjct: 21 MPWVEKYRPKNLDEVSSQKTTVQILKKNLETANLPHMLFYGPPGTGKTSTILAMAKQLYG 80
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
P K +V LEL + GF R V +E N
Sbjct: 81 PRLFKTRV---------------LELNASDERGISIVRERIKGFA-RLTVSRPXQEDKAN 124
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ + + SR
Sbjct: 125 YPCPP-----YKMIILDEADSMTGDAQSALRRTMETYSGITRFCLICNYVTRIIDPLASR 179
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R S E + LE+I KE + + + + S LRRAI
Sbjct: 180 CSKFRFKSLDEGSALTRLEYICGKESIDVDTNILKEILRISEGDLRRAI 228
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 36/213 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD +I H+DI + + VT+ PHLLFYGPPG+GK + I+A RQ++ P
Sbjct: 10 WVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYEPK 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV--VQEVIKEMAKN 120
E +++ +EL+ SD DR + V+ I A
Sbjct: 70 ----------------------EFSSMV----LELNASD----DRGIGIVRGEILNFAST 99
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I K FK+++L+E D ++ +AQ++LRR +EKY+ + R + CN SK+ ++SR
Sbjct: 100 RTIFNKK---FKLIILDEADAMTHDAQNALRRVIEKYADNARFCIICNYLSKIIPPLQSR 156
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSG 212
C R + Q+V +E + K E + + P+G
Sbjct: 157 CTRFRFGPLSVSQMVPRIEMVIKTEDVPITPAG 189
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 34/239 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V H+ + LKKL+ + PHLLFYGPPG+GK + I+A+ R+++GP
Sbjct: 31 WVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYGPS 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ + +E + R ID VV++ IK A +R
Sbjct: 91 YKSMVLELNA----SDDRGID-------------------------VVRDQIKVFASSRQ 121
Query: 123 IDTKG-----KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
I +G + FK+++L+E D ++ AQ++LRR +E+Y+ R + N + K+ A+
Sbjct: 122 IFQRGGEENARSNFKLVILDEADAMTNVAQNALRRVIEQYTTHTRFCILANYTHKLNPAL 181
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC R + E I K + + E +++ L E S +RRA+ + C
Sbjct: 182 LSRCTRFRFSPLPEAAIDKRIMQVIDAEKVKIAPDAKAALLELSKGDMRRALNVLQACH 240
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V+ H++I LK V+ D H+LF GP G+GK T A+ R+++G
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ + +EL+ SD D VV++ IK A+
Sbjct: 74 ---------DDWR-----------------EHFLELNASDERGID--VVRDRIKNFART- 104
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 105 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + IA +E ++L L ++ +R+AI + V
Sbjct: 162 AVFRFSPLADDAVAEEIRNIAAQEDIELTEDGLDALVYAADGDMRKAINGLQAASV 217
>gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT]
gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT]
Length = 305
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79
+I + LK V ++ PHLLF GPPG GK ++++R++FG G W+
Sbjct: 5 EIVRRLKSYVATRNLPHLLFSGPPGVGKTAAAISIVREIFGEG----------WR----- 49
Query: 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV 139
N +EL+ SD D VV+ +K+ A+ P+ G FKV+ L+E
Sbjct: 50 ------------DNFIELNASDERGID--VVRTKVKDFARMAPL---GGAEFKVIFLDEA 92
Query: 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE 199
D L+ +AQ +LRRTME+YSA+CR IL CN SSK+ E I+SRC R + T + I K +
Sbjct: 93 DALTSDAQSALRRTMERYSATCRFILSCNYSSKIIEPIQSRCAVYRFRALTPDAIEKRIR 152
Query: 200 FIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFTMPSV 247
+IA++EG+++ + + +R+AI + + + + M ++
Sbjct: 153 YIAEQEGVEVTEDGIEAINYVARGDMRKAINALQAAALISDKVDMNTI 200
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V+ H++I LK V+ D H+LF GP G+GK T A+ R+++G
Sbjct: 35 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG- 93
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ + +EL+ SD D VV++ IK A+
Sbjct: 94 ---------DDWR-----------------EHFLELNASDERGID--VVRDRIKNFART- 124
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 125 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 181
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + IA +E ++L L ++ +R+AI + V
Sbjct: 182 AVFRFSPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASV 237
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V H++I +K+LV E PH+LFYGPPG+GK + I+A+ RQ++G
Sbjct: 16 WVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILAVARQMYG-- 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R++ LEL + D G +V+E I + A +
Sbjct: 74 --------------ASLRSMVLELN----------ASDDRGIG---IVREQIVDFASTK- 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
T FK+++L+E D ++++AQ +LRR +EKY+ + R L CN +K+ A++SRC
Sbjct: 106 --TMFSNKFKLVILDECDAMTKDAQAALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCT 163
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + L+F+ E + + G + +RR +
Sbjct: 164 RFRFPPLADSYVRSRLQFVIDSERVNMGDGGLDAVVTLGAGDMRRTL 210
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H+DI LK V + D PHL+F GP G+GK T A+ R+++
Sbjct: 24 VWIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIY-- 81
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 82 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 113
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 114 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T+ I + IA + +++ L ++ +R+AI + + V
Sbjct: 171 AVFRFTELTDNAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAV 226
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 35/232 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ ++ V +++ + L+K + + PH+LFYGPPG+GK T +A+ RQ++GP
Sbjct: 8 WVEKYRPRNINDVAHQEEVVRTLEKALETANMPHMLFYGPPGTGKTTCALAICRQLYGPE 67
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + VV+ IK A
Sbjct: 68 LIKSRV--------------------------LELNASDE--RGISVVRNKIKGFASTAV 99
Query: 123 IDTKGKRGF-----KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+G G+ K+L+L+E D ++ +AQ +LRRTME YS R + CN S++ E I
Sbjct: 100 --GQGAPGYPSPPYKILILDEADSMTNDAQSALRRTMETYSKVTRFFILCNYISRIIEPI 157
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
SRC R E + L+FIA EGL L G + S +R+AI
Sbjct: 158 ASRCAKFRFKPLGHEVMGDRLKFIATAEGLTLGEGCYEACSTHSGGDMRKAI 209
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V+ H++I LK V+ D H+LF GP G+GK T A+ R+++G
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ + +EL+ SD D VV++ IK A+
Sbjct: 74 ---------DDWR-----------------EHFLELNASDERGID--VVRDRIKNFART- 104
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 105 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + IA +E ++L L ++ +R+AI + V
Sbjct: 162 AVFRFSPLADDAVAEEIRNIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASV 217
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ L + H DI L+ V + D PHLLF GP G+GK T A+ R+V+
Sbjct: 18 VWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE+ I + IA EG+ + L ++ +R+AI + V
Sbjct: 165 AVFRFTELTEDAIEAQVREIAANEGIDVTDDGVDALVFAADGDMRKAINGLQAAAV 220
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 115/212 (54%), Gaps = 25/212 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++++ H+ + + L K + + PHLLFYGPPG+GK T ++A R+++ P
Sbjct: 13 WVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYHPS 72
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K+ + +++A R ID+ T+ + + + A D
Sbjct: 73 ----KMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASD--------------- 113
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
K FK+++L+E D ++++AQ++LRR +EKY+ + R + CN + + AI+SRC
Sbjct: 114 ----KDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRC 169
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQL-PSG 212
R + IV L+FI K EGLQ+ P G
Sbjct: 170 TRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDG 201
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 117/232 (50%), Gaps = 35/232 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+T V + L+ ++ D PHLLFYGPPG+GK + I+AL R++FGP
Sbjct: 25 WVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSRELFGPQ 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + VV+E IK A
Sbjct: 85 LMKERV--------------------------LELNASDE--RGISVVREKIKTFASTSV 116
Query: 123 IDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+KG G FK+++L+E D ++ AQ +LRRTMEKYS R L CN S++ E +
Sbjct: 117 --SKGVDGYPCPPFKIIILDEADAMTAAAQSALRRTMEKYSNVTRFCLICNYISRIIEPL 174
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
SRC R + + +V L+ I KE +Q R+ + + +R+AI
Sbjct: 175 ASRCAKFRFKPLSRDTLVGRLQHIRDKEDVQCSDEVLARIIDLVDGDMRQAI 226
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 31/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + +V +++ L + + + PHLLFYGPPG+GK + +A+ RQ++GP
Sbjct: 6 WVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPE 65
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +VV+E +K A
Sbjct: 66 LMKSRV--------------------------LELNASDE--RGIHVVREKVKAFAATAV 97
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ +K+L+L+E D ++++AQ++LRRTME YS R + CN S++ E + S
Sbjct: 98 GAPVPGYPCPPYKLLILDEADSMTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLAS 157
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
RC R + +E I ++E + L G L+ S LRRAI + ++
Sbjct: 158 RCAKFRFKPLQPAIMAGRIEHICERESVTLGPGALDTLSAVSGGDLRRAINTLQSA 213
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I LK+ V + P+L+F GP G+GK T + + R+++G
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVGIAREIYG- 76
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 77 ---------DDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE+ I + IA EG+++ L ++ +R+AI + V
Sbjct: 165 AVFRFTELTEDAIEAQVREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAV 220
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 27/234 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+++D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 35 WVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD- 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++ +++A R I++ T + N +L+ S+ R
Sbjct: 94 ----MYRDRILELNASDERGINVVRTKIK--NFAQLTASNV------------------R 129
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P D + FK++VL+E D ++ AQ +LRRTMEK S S R L CN S++ I SRC
Sbjct: 130 P-DGRSCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 188
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + E QI+ L+ I + EG+++ + S +RRAI + ++C
Sbjct: 189 SKFRFKALGETQIIARLQHICELEGVRIDPDAYKSIVRISGGDMRRAITTLQSC 242
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 31/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + +V +++ L + + + PHLLFYGPPG+GK + +A+ RQ++GP
Sbjct: 6 WVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPE 65
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +VV+E +K A
Sbjct: 66 LMKSRV--------------------------LELNASDE--RGIHVVREKVKAFAATAV 97
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P+ +K+L+L+E D ++++AQ++LRRTME YS R + CN S++ E + S
Sbjct: 98 GAPVPGYPCPPYKLLILDEADSMTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLAS 157
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
RC R + +E I ++E + L G L+ S LRRAI + ++
Sbjct: 158 RCAKFRFKPLQPAIMAGRIEHICERESVTLGPGALDTLSAVSGGDLRRAINTLQSA 213
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I L++ + + D PHL+F GP G+GK T ++ R+V+
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGTGKTTAAQSIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R +E+ I + IA+ EG+ + L ++ +R+AI + + V
Sbjct: 165 AVFRFTELSEDAIEAQIREIAEIEGITVTDDGIDALVYAADGDMRKAINALQAAAV 220
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ L +++ H+DI +++ ++E PHLL YGPPG+GK + I+A RQ++
Sbjct: 11 WVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTILACARQLYR-- 68
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ E +++ +EL+ SD D +V+ I A R
Sbjct: 69 --------------------EREFSSMV----LELNASDDRGID--IVRGPILSFASTRT 102
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 103 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 159
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V L+ + ++EG+ + L S+ +RRA+
Sbjct: 160 RFRFGPLTPELMVPRLQHVIQEEGVDVTEDGMKALVTLSSGDMRRAL 206
>gi|408383246|ref|ZP_11180783.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
gi|407814028|gb|EKF84666.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
Length = 321
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD+V+ I LK+ + E + P+L+F GP G GK T +AL + + G
Sbjct: 5 WVEKYRPQTLDEVVGQDHIIHRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+ WK N +EL+ SDA G + V++ IK + +
Sbjct: 63 --------EYWK-----------------QNFLELNASDARGIE---TVRKDIKSFCRLK 94
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ + F+++ L+EVD ++++AQH+LRR ME Y+ + IL CN SSK+ + I+SRC
Sbjct: 95 AVGSP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRC 150
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R Q+++ LE IAK E + G + + +RRA+
Sbjct: 151 AIFRFAPIKGHQVIERLEIIAKAENVNYAPGTLESIVYFAEGDMRRAV 198
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 30/235 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ L +V QDI +++ V PHLLFYGPPG+GK + I+AL R+++GP
Sbjct: 11 WVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPN 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+N+ LEL + D G VV+ IK A R
Sbjct: 71 Y----------------KNMVLELN----------ASDDRGID---VVRNQIKSFASTRQ 101
Query: 123 IDTKGKR-GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I T FK+++L+E D ++ AQ+SLRR +EKY+ +CR + N S K+ A+ SRC
Sbjct: 102 IFTSSSSPQFKLIILDEADAMTSVAQNSLRRIIEKYTKNCRFCILANYSHKLNPALISRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + E I ++ + KE + + L + S +RR++ + C+
Sbjct: 162 TRFRFHPIDEAAIRSRIDNVIIKEKVNITPDALNALLQLSQGDMRRSLNVLQACK 216
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TLD+V+ +I LKK V++++ PH+LF GPPG+GK T+ L ++G
Sbjct: 6 LLWTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYG 65
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+N I +EL+ SD G + V++ +KE A+
Sbjct: 66 --------DNYRQYI-------------------LELNASDERGIE---VIRSKVKEFAR 95
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
R + G FK+++L+E D ++ +AQ +LRR ME Y+AS R IL N SK+ E I+S
Sbjct: 96 TRVV---GNVPFKIILLDEADNMTADAQQALRRLMELYTASTRFILIANYPSKIIEPIQS 152
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R R E +V+ L++I E ++ + E S +RRAI
Sbjct: 153 RTAVFRFTPLKREDVVERLKYICSNEKVKCHEDALNTIFELSEGDMRRAI 202
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TLD+V+ +++ LKK V E++ PH+LF GPPG+GK T+ L ++G
Sbjct: 7 LLWAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYG 66
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
K +EL+ SD + V++ +KE A+
Sbjct: 67 DDYRKY---------------------------MLELNASDE--RKIEVIRGKVKEFART 97
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R + G FK+++L+E D ++ +AQ +LRR ME YSA+ R IL N SK+ E I+SR
Sbjct: 98 RVV---GDVPFKIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSR 154
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + + E +V L++I E ++ + E S +RRAI +T
Sbjct: 155 TAIFRFSPLSREDVVGRLKYICNAEKIECAEKALETIYELSEGDMRRAINILQTA 209
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 30/235 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ L +V QDI +++ V PHLLFYGPPG+GK + I+AL R+++GP
Sbjct: 11 WVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTIIALAREIYGP- 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+N+ LEL + D G VV+ IK A R
Sbjct: 70 ---------------HYKNMVLELN----------ASDDRGID---VVRNQIKSFASTRQ 101
Query: 123 IDTKGKR-GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I T FK+++L+E D ++ AQ+SLRR +E+Y+ +CR + N S K+ A+ SRC
Sbjct: 102 IFTSSSSPQFKLIILDEADAMTSVAQNSLRRIIERYTKNCRFCILANYSHKLNPALISRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + EE I ++ + KE + + L S +RR++ + C+
Sbjct: 162 TRFRFHPIDEEAIRSRIDNVIIKEKVNITPDALNALLRLSQGDMRRSLNVLQACK 216
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V+ H++I LK V+ D H+LF GP G+GK T A+ R+++G
Sbjct: 97 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG- 155
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ + +EL+ SD D VV++ IK A+
Sbjct: 156 ---------EDWR-----------------EHFLELNASDERGID--VVRDRIKNFART- 186
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 187 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 243
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + + IA +E ++L L ++ +R+AI + V
Sbjct: 244 AVFRFSPLADDAVAEEIRNIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASV 299
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 125/240 (52%), Gaps = 42/240 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V LKK + + PH+LFYGPPG+GK + I+A+ ++++GP
Sbjct: 21 WVEKYRPKSLDDVYSQDHTVSVLKKNLQTSNLPHMLFYGPPGTGKTSTILAMTKELYGPN 80
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
++ +EL+ SD G +V++ IK AK
Sbjct: 81 LINSRI--------------------------LELNASDERGIN---IVRKKIKNFAKLI 111
Query: 120 -NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
++P ++ +K+++L+E D ++ +AQ +LRRTMEKYS R L CN +++
Sbjct: 112 ISKPSKDDLEKYPCPPYKIIILDEADSMTSDAQSALRRTMEKYSNITRFCLICNYVTRII 171
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-----QLPSGFATRLAEKSNRSLRRAI 229
+ + SRC R S + ++ L+FI+K E L ++ + F L + +N LRR+I
Sbjct: 172 DPLASRCTKFRFKSLNNDNAIERLKFISKNENLNVENDEINNDFYKNLLQIANGDLRRSI 231
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 129/250 (51%), Gaps = 35/250 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRP+TL+ V+ H+DI L + + + PHLL YGPPG+GK + ++AL ++VFGP
Sbjct: 24 WIEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVLALAKKVFGP- 82
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K ++ T +++A R ID VV++ IK+ A R
Sbjct: 83 ----KYKSMTLELNASDDRGID-------------------------VVKKEIKDFAGTR 113
Query: 122 PID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
I + GFK+++L+E D +++ AQ +LRR +E Y+A+ R L CN +K+ A+
Sbjct: 114 TIFGLIVLLCRTGFKMIILDEADNMTQTAQFALRRIIENYTANARFCLICNYVNKIIPAL 173
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
+SRC R + T I LE I KE ++ + + S +R+ + ++ +
Sbjct: 174 QSRCTRFRFSPLTSADIQGNLERILDKENIKATPDALKAVEKISGGDMRKCLNILQSSSM 233
Query: 238 QQLRFTMPSV 247
T+ S+
Sbjct: 234 ASKEVTVESI 243
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 29/245 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 38 WVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYG-- 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ N+ LEL + + G VV++ I++ A
Sbjct: 96 --------------SQYGNMILELN----------ASDERGIG---VVRQQIQDFASAHS 128
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K K+++L+E D ++++AQ +LRR +EKY+ S R L CN +K+ A++SRC
Sbjct: 129 LSFGAKPAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCT 188
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + + L I K EGL + G + L SN +R+++ ++ + +
Sbjct: 189 RFRFAPLDGSHVSERLRHIIKSEGLDVDEGGLSALVRLSNGDMRKSLNILQSTHMASQQI 248
Query: 243 TMPSV 247
T +V
Sbjct: 249 TEEAV 253
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L+++I H DI + + + E PHLLFYGPPG+GK + I+A+ +Q++ P
Sbjct: 12 WVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQLYSPK 71
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV--VQEVIKEMAKN 120
V +EL+ SD DR + V+ + A
Sbjct: 72 EFNSMV--------------------------LELNASD----DRGIGIVRGPVLSFAST 101
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I K GFK+++L+E D ++ +AQ++LRR +EK++ + R L CN SK+ AI+SR
Sbjct: 102 RTI---FKSGFKIVILDEADAMTNDAQNALRRVIEKFTENTRFCLICNYLSKIIPAIQSR 158
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R +Q+V LE + ++E + + L +N +R+++
Sbjct: 159 CTRFRFGPLDNQQMVPRLEHVIQQERVDVTEDGMNALVTLANGDMRKSL 207
>gi|336272567|ref|XP_003351040.1| hypothetical protein SMAC_04344 [Sordaria macrospora k-hell]
gi|380090807|emb|CCC04977.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 387
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 34 WVEKYRPKTLSDVTAQDHTITVLQRTLQATNLPHMLFYGPPGTGKTSTILALAKELYGP- 92
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
E +K ++ +++A R I + + ++L+ A ++ RY
Sbjct: 93 -ELIK--SRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPP--------- 140
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 141 ---------FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + K LE IA+ EG+ L G L + S LR+AI ++
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSA 245
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +++ I A R
Sbjct: 80 --------------------DKEFGSMV----LELNASDDRGID--IIRGPILSFASTRT 113
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LR +EK++ + R L CN SK+ A++SRC
Sbjct: 114 I---FKKGFKLVILDEADAMTQDAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 171 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 131/248 (52%), Gaps = 28/248 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ +D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD- 90
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+++ +++A R I++ T + N +LS S R
Sbjct: 91 ----MFKDRILELNASDERGINVVRTKIK--NFSQLSASSV------------------R 126
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P D K FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ I SRC
Sbjct: 127 P-DGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 185
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC-RVQQL 240
R + E++++ L++I EG+++ + + S LRRAI + ++C R++
Sbjct: 186 SKFRFKALGEDKVIDRLKYICGLEGVKIEEDAYKSIVKISGGDLRRAITTLQSCYRLKGP 245
Query: 241 RFTMPSVD 248
T+ + D
Sbjct: 246 EHTINTAD 253
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 36/241 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D+V + L+K +T + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 27 WVEKYRPKTIDEVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + +V++ IK A+ P
Sbjct: 87 NFRNRV--------------------------LELNASDE--RGISIVRDKIKNFARQTP 118
Query: 123 ----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + GK +K+++L+E D ++++AQ +LRR ME Y+ R L CN +++
Sbjct: 119 RAQAVASDGKSYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRII 178
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E + SRC R + L +IA E + L S+ LRRAI ++
Sbjct: 179 EPLASRCSKFRFTPLDSKSSFSRLSYIATAEHIDTNPAVINALISTSSGDLRRAITYLQS 238
Query: 235 C 235
Sbjct: 239 A 239
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD V+ H++I LK V+ D H+LF GP G+GK T A+ R+++G
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ + +EL+ SD D VV++ IK A+
Sbjct: 74 ---------DDWR-----------------EHFLELNASDERGID--VVRDRIKNFART- 104
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 105 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + ++ + + IA +E ++L L ++ +R+AI + V
Sbjct: 162 AVFRFSPLADDAVADEIRNIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASV 217
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 133/249 (53%), Gaps = 30/249 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP ++D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 33 WVEKYRPSSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD- 91
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+++ +++A R I++ T + N +LS S R
Sbjct: 92 ----MYKDRILELNASDERGINVVRTKIK--NFSQLSASHV------------------R 127
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P D + FK+++L+E D ++ AQ +LRRTMEK S+S R L CN S++ I SRC
Sbjct: 128 P-DGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRC 186
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEKSNRSLRRAILSFETC-RVQQ 239
R EE+I+ L+ I + E +++ P + T + + S LRRAI + ++C R+Q
Sbjct: 187 SKFRFKPLGEEKIIARLQHICELESVKIDPDAYKT-IVKISGGDLRRAITTLQSCFRLQG 245
Query: 240 LRFTMPSVD 248
T+ + D
Sbjct: 246 SEHTINTAD 254
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ V HQDI + K V PHLLFYGPPG+GK + I+AL R+++
Sbjct: 48 WVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIY--- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
GS+N+ + +EL+ SD D VV+E IK A +
Sbjct: 105 ---------------GSKNMRQMV--------LELNASDDRGID--VVREQIKTFASTKQ 139
Query: 123 I-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
I + +K+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A+
Sbjct: 140 IFASKSSSTSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPAL 199
Query: 178 RSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC R SP +E ++VL + + +E +Q+ + L S +RRA+ + C
Sbjct: 200 LSRCTRFRF-SPLKEADIRVLVDKVIAEENVQINAEATDALVRLSKGDMRRALNVLQACH 258
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 124/240 (51%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 36 WVEKYRPKTLSDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K+ A+
Sbjct: 96 LMKSRV--------------------------LELNASDE--RGISIVREKVKDFARTQL 127
Query: 120 -NRPIDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
N P K + FK+++L+E D ++++AQ +LRRTME YS R L CN +++ +
Sbjct: 128 TNPPPGYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIID 187
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R S + + LE IA+ EG+ + G L + S+ LR+AI ++
Sbjct: 188 PLASRCSKFRFKSLDQGNARRRLEEIARLEGVGMEDGAVDALIKCSDGDLRKAITFLQSA 247
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 31/226 (13%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP+TL+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK--- 57
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
D E ++ +EL+ SD D +V+ I A R I
Sbjct: 58 -------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRTI 92
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 93 ---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTR 149
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + K+E + L L ++ +RRA+
Sbjct: 150 FRFGPLTPELMVPRLEHVIKEEKVDLSEDGMKALVTLASGDMRRAL 195
>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 417
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL +V + Q L + + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 35 WVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYGPE 94
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I + + +LS Y + K + +
Sbjct: 95 LMKSRV----LELNASDERGISIVRQKVKDFARQQLS-----VAPNYNIMVEDKSSGETK 145
Query: 122 PIDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
+ + K FK++VL+E D ++++AQ +LRRTME YS R L CN +++ + +
Sbjct: 146 TVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLA 205
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
SRC R S + +K + IAK E + L G A L ++ LR+AI ++
Sbjct: 206 SRCSKFRFKSLDQGNAIKRVSDIAKLENVSLEDGVAEELVRVADGDLRKAITFLQSA 262
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD + ++I + L + D PHLLF GP G GK T A+ R ++G
Sbjct: 68 IWIEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYG- 126
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 127 ---------DDWR-----------------GNFLELNASDQRGID--VVRDRIKNFARS- 157
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 158 ---SFGGHDYRIIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 214
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ I IA+ E ++L L + +RRAI S +
Sbjct: 215 AVFRFSPLGDDAIADQTRDIAETEEIELTEDGLDALVYAAGGDMRRAINSLQAA 268
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 23/246 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V + + LKK + + PH+LFYGPPG+GK + I+AL +Q++GP
Sbjct: 20 WVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGPR 79
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V LEL S + + R V KE +N P
Sbjct: 80 LFKSRV---------------LELNA-SDERGISIVRQKVKNFARLAVSNASKEDLENYP 123
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+K+++L+E D ++ +AQ +LRRT+E YS R L CN +++ + + SRC
Sbjct: 124 CPP-----YKLIILDEADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCS 178
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R E + +++I +KE L + L SN LR+AI ++ +L F
Sbjct: 179 KFRFGLLNNENALSRIKYIVEKENLNVDEDVPETLLSISNGDLRKAITFLQSA--SRLSF 236
Query: 243 TMPSVD 248
+ + D
Sbjct: 237 ALANPD 242
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 29/245 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++L V H+DI + +L +E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 42 WVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A N+ LEL + D G VV++ I++ A +
Sbjct: 100 --------------AQYHNMILELN----------ASDDRGID---VVRKQIQDFASTQS 132
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
K K+++L+E D ++++AQ +LRR +EKY+ + R L CN +K+ A++SRC
Sbjct: 133 FSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCT 192
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + + L+ + + EGL +P L SN +R+A+ ++ + +
Sbjct: 193 RFRFAPLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALNILQSTHMASQQI 252
Query: 243 TMPSV 247
T +V
Sbjct: 253 TEETV 257
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+TLD V +++ +KK V E PHLLFYGPPG+GK + I+AL + ++G
Sbjct: 11 WVEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIYG-- 68
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 69 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 101
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +EKY+ + R + N S K+T A+ SRC
Sbjct: 102 IFSK---GFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKITPALLSRCT 158
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + K + + E L++ L E SN +RR +
Sbjct: 159 RFRFQPLPNDAVEKRMANVLVHEHLRISPAAKEALLELSNGDMRRVL 205
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 30/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++LD V H+DI + +L E PHLL YGPPG+GK + I+A+ R+++GP
Sbjct: 41 WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP- 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
RN+ LEL + D G VV++ I++ A +
Sbjct: 100 ---------------KYRNMILELN----------ASDDRGID---VVRQQIQDFASTQS 131
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ GK K+++L+E D ++++AQ +LRR +EKY+ S R L N +K+ A++SRC
Sbjct: 132 F-SLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCT 190
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + + L+ + + EGL + L SN +R+A+
Sbjct: 191 RFRFAPLDPLHVSQRLKHVIEAEGLGVSDCGLAALVRLSNGDMRKAL 237
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ V HQDI + K V PHLLFYGPPG+GK + I+AL R+++
Sbjct: 48 WVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIY--- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
GS+N+ + L++++ D G VV+E IK A +
Sbjct: 105 ---------------GSKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 139
Query: 123 I-----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
I + +K+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A+
Sbjct: 140 IFASKSSSTSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPAL 199
Query: 178 RSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC R SP +E ++VL + + +E +Q+ + L S +RRA+ + C
Sbjct: 200 LSRCTRFRF-SPLKEADIRVLVDKVIAEENVQINAEATDALVRLSKGDMRRALNVLQACH 258
>gi|126137263|ref|XP_001385155.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|126092377|gb|ABN67126.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 322
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 32/233 (13%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP TLD+V ++I Q +KK E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 3 VEKYRPSTLDEVYGQEEIVQTVKKFAHENRLPHLLFYGPPGTGKTSTIIALAREIYG--- 59
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
+N+ LEL + D G VV+ IK A I
Sbjct: 60 -------------TNYKNMVLELN----------ASDDRGID---VVRNQIKNFASTMQI 93
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
+ RGFK+++L+E D ++ AQ+SLRR +EKY+ + R + N + K+ A+ SRC
Sbjct: 94 FS---RGFKLIILDEADAMTAVAQNSLRRIIEKYTKNTRFCILANYAHKLNPALLSRCTR 150
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + +E+ I ++ + KE L++ L + S +RRA+ + C+
Sbjct: 151 FRFHPISEDAIKDRIQNVIIKESLKIDPPAEAALLKLSKGDMRRALNVLQACK 203
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRP +LD V +D+ + ++K V E PHLLFYGPPG+GK + I AL ++++G
Sbjct: 13 WIEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLLFYGPPGTGKTSTICALAKEIYG-- 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + RN+ LEL + D G VV+ IKE A R
Sbjct: 71 --------KNY------RNMVLELN----------ASDDRGID---VVRNQIKEFASTRQ 103
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +EKY+ + R + N + K+T A+ SRC
Sbjct: 104 IFSK---GFKLIILDEADAMTSAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCT 160
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E I + + I E LQL L + +RRA+
Sbjct: 161 RFRFQPLAEAAIERRVLSIMAHEHLQLTEDARAALLRLAAGDMRRAL 207
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 34/251 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD+V+ H+DI ++L+ + PHLLFYGPPG+GK T I A +FG
Sbjct: 20 WVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGK- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
++++ AN +E++ SD D VV++ ++E A
Sbjct: 79 -DRIR------------------------ANVLEMNASDDRGID--VVRQQVREFASTSS 111
Query: 123 IDTKGK------RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
FK+++L+E D++S +AQ +LRR +EKY+ + R + CN +K+ A
Sbjct: 112 FYFASAPAAPTIAAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPA 171
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
++SRC R + ++ L+F+A++EG++ SN LRR + + +
Sbjct: 172 LQSRCTRFRFAPVKKSAMLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASA 231
Query: 237 VQQLRFTMPSV 247
+ T SV
Sbjct: 232 MSAGEITEESV 242
>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
gi|110287812|sp|Q2FQT9.1|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
Length = 323
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 32/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ L+ +I Q+I + L+ V +++ PHLLF G G+GK T +AL R+ FG
Sbjct: 7 IWIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W++ N EL+ SD D VV+ IK+ A+
Sbjct: 66 ---------EDWQM-----------------NFRELNASDERGID--VVRNQIKQFARTS 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P G FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN S+K+ + I+SRC
Sbjct: 98 PF---GGSTFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + + ++++ I+ + L + + + +R+AI + + +
Sbjct: 155 AIYRFRPLGRQAVSEMVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGAAI 210
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 26/237 (10%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 41 WVEKYRPKSLDDVAAQDHTTAVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFGPA 100
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELS-PS--DAGFQDRYVVQEVIKEMA 118
+ ++ +++A R I++ + +LS PS DA ++ +Y
Sbjct: 101 LYRTRI----LELNASDERGINIVREKIKDFARTQLSHPSGLDAAYKAKYPCPP------ 150
Query: 119 KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
FK+++L+E D ++++AQ +LRRTME+YS R L CN +++ E +
Sbjct: 151 ------------FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLA 198
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
SRC R + + IA+ EGL L G L S LRRAI ++
Sbjct: 199 SRCSKFRFKALDGVSAGDRINEIAQAEGLTLDDGVVDTLIRCSEGDLRRAITYLQSA 255
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 117/246 (47%), Gaps = 32/246 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP L ++ DI + L V + PHLLF G G GK T + L R+ FG
Sbjct: 7 IWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W++ N EL+ SD D VV+ IKE A+ R
Sbjct: 66 ---------DSWQM-----------------NFRELNASDERGID--VVRNQIKEFARTR 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P G FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 P---AGDAAFKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
R + + + + IA +E L + + + +R+AI + + +
Sbjct: 155 AIYRFRPLGPQAVKEEITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILSAT 214
Query: 242 FTMPSV 247
P V
Sbjct: 215 IEAPMV 220
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 31/235 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D + ++ + L+K + + PH+LFYGPPG+GK + I+AL +Q+FGP
Sbjct: 95 WVEKYRPKTIDDISAQENTVRVLRKSLENANLPHMLFYGPPGTGKTSTILALAKQLFGPE 154
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A + +V +EL+ SD + VV+E IK AK
Sbjct: 155 AFRTRV--------------------------LELNASDE--RGITVVREKIKNFAKIAI 186
Query: 123 IDTKGKR---GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
G +K+++L+E D ++++AQ +LRR ME YS R L CN +++ E I S
Sbjct: 187 SPAVGDYPCPPYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPITS 246
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
RC R K LE++ +KE +Q L S LRRAI ++
Sbjct: 247 RCSKFRFKPLDTTNTQKRLEYVCQKEEVQCGEESVQALIRCSEGDLRRAITYLQS 301
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 34/251 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD+V+ H+DI ++L+ + PHLLFYGPPG+GK T I A +FG
Sbjct: 20 WVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGK- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
++++ AN +E++ SD D VV++ ++E A
Sbjct: 79 -DRIR------------------------ANVLEMNASDDRGID--VVRQQVREFASTSS 111
Query: 123 IDTKGK------RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
FK+++L+E D++S +AQ +LRR +EKY+ + R + CN +K+ A
Sbjct: 112 FYFASTPAAPTIAAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPA 171
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
++SRC R + ++ L+F+A++EG++ SN LRR + + +
Sbjct: 172 LQSRCTRFRFAPVKKSAMLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASA 231
Query: 237 VQQLRFTMPSV 247
+ T SV
Sbjct: 232 MSAGEITEESV 242
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LWV+KYRP +D +I + +K+++ + PHLLF+GPPG+GK T+ +A+ R+++G
Sbjct: 6 VLWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG 65
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
W+ N +EL+ SD + +++E +KE AK
Sbjct: 66 ----------DAWR-----------------ENVLELNASDE--RGIAMIREKVKEFAKT 96
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P K F++++L+E D ++ +AQ +LRR ME Y+ S R IL N S + E I+SR
Sbjct: 97 MP---TVKAPFRLIILDEADNMTPDAQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSR 153
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
C R + ++ ++ L IA KEG+++ + + S +R+AI + +
Sbjct: 154 CSLFRFSPLPKDAVLGRLREIASKEGVKVTDDALEAIWDVSQGDMRKAINTLQAA 208
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V LK+ + + PH+LFYGPPG+GK + ++AL ++++GP
Sbjct: 28 WVEKYRPKSLDDVSSQDHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTVLALAKELYGPE 87
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + +V++ IK A +
Sbjct: 88 LMKDRV--------------------------LELNASDE--RGIAIVRDSIKNFAAQKV 119
Query: 123 IDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ K FK+++L+E D ++ +AQ +LRRTME YSA R L CN +++ +
Sbjct: 120 VAPKDHIAEKYPCPPFKIIILDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTRIID 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R + L ++ E L + G ++ E +N LRRAI ++C
Sbjct: 180 PLASRCSKFRFRLLDGNDALARLRHVSDAEQLSVEDGVLEKILEVANGDLRRAITILQSC 239
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 32/235 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TLD+V+ +++ LKK V E++ PH+LF GPPG+GK T+ L ++G
Sbjct: 7 LLWAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYG 66
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
K +EL+ SD + V++ +KE A+
Sbjct: 67 DDYRKY---------------------------MLELNASDE--RKIEVIRGKVKEFARA 97
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R + G FK+++L+E D ++ +AQ +LRR ME YSA+ R IL N SK+ E I+SR
Sbjct: 98 RVV---GDVPFKIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSR 154
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + + E +V L++I E ++ + E S +RRAI +T
Sbjct: 155 TAIFRFSPLSREDVVGRLKYICNAEKIECAEKALETIYELSEGDMRRAINILQTA 209
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 38/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 38 WVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 97
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
+ ++ +EL+ SD + +V+E +K+ A+
Sbjct: 98 LYRSRI--------------------------LELNASDE--RGIAIVREKVKDFARVQL 129
Query: 120 NRPIDTKGKR-------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
+ P FK+++L+E D ++++AQ +LRRTME YS R L CN ++
Sbjct: 130 SHPTGVDKSYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTR 189
Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
+ E + SRC R L IAK E L+L G +L + S+ LRRAI
Sbjct: 190 IIEPLASRCSKFRFKPLDNSAAGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRAITYM 249
Query: 233 ET 234
++
Sbjct: 250 QS 251
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LWV+++RP L ++ + + L + V D PHLLFYGPPG GK T +AL R+++G
Sbjct: 7 LLWVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYG 66
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+W+ ++ +EL+ SD D V++E +KE A+
Sbjct: 67 ----------DSWR-----------------SSVLELNASDERGID--VIREKVKEFART 97
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
P G FK+++L+E D ++ +AQ +LRR ME Y+++ R IL N S + E I+SR
Sbjct: 98 IP---TGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYISGIIEPIQSR 154
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R N +E +++ L IAK+ G+++ + E S +R+AI
Sbjct: 155 CAIFRFNPLPKEAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKAI 203
>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
Length = 387
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 34 WVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++++ +++A R I + + ++L+ A ++ RY
Sbjct: 94 L----IKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPP--------- 140
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 141 ---------FKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + K LE IA+ EG+ L G L + S LR+AI ++
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSA 245
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L+ +I H++I + K + E+ PHLLFYGPPG+GK + I+A RQ++ P
Sbjct: 11 WVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYKPQ 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ GS ++L + D G +V+ I + A R
Sbjct: 71 S-------------FGSMVLELN------------ASDDRGIN---IVRGQILDFASTRT 102
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K G+K+++L+E D ++ +AQ++LRR +EKY+ + R + CN SK+ AI+SRC
Sbjct: 103 I---FKGGYKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPAIQSRCT 159
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +QI+ LE + + EG+ + L + +R+ +
Sbjct: 160 RFRFAPLSPDQILPRLEHVVEAEGIDVTDDGKKALMTLAGGDMRKVL 206
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 32/234 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+KYRP +D +I + +K+++ + PHLLF+GPPG+GK T+ +A+ R+++G
Sbjct: 7 LWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG- 65
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD + +++E +KE AK
Sbjct: 66 ---------DAWR-----------------ENVLELNASDE--RGIAMIREKVKEFAKTI 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P K F++++L+E D ++ +AQ +LRR ME Y++S R IL N SS + E I+SRC
Sbjct: 98 P---TVKAPFRLIILDEADNMTPDAQQALRRIMEMYTSSVRFILLANYSSGIIEPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ ++ L IA +EG+++ + + S +R+AI + +
Sbjct: 155 SLFRFSPLPKDAVLGRLRDIASREGVKVTDEALEAIWDISQGDMRKAINTLQAA 208
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 26/237 (10%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 41 WVEKYRPKSLDDVAAQDHTTTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPT 100
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELS-PS--DAGFQDRYVVQEVIKEMA 118
+ ++ +++A R I++ + +LS PS DA ++++Y
Sbjct: 101 LYRTRI----LELNASDERGINIVREKIKDFARTQLSQPSGLDAAYREKYPCPP------ 150
Query: 119 KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
FK+++L+E D ++++AQ +LRRTME+YS R L CN +++ E +
Sbjct: 151 ------------FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLA 198
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
SRC R + + IA EGL L G L S LRRAI ++
Sbjct: 199 SRCSKFRFKALDGVSAGDRISEIAAAEGLTLDEGVVETLIRCSEGDLRRAITYLQSA 255
>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
Length = 366
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 34 WVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++++ +++A R I + + ++L+ A ++ RY
Sbjct: 94 L----IKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPP--------- 140
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 141 ---------FKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + K LE IA+ EG+ L G L + S LR+AI ++
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSA 245
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 38/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 41 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 100
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ ++ +EL+ SD + +V+E +K A+ +
Sbjct: 101 LYRSRI--------------------------LELNASDE--RGIGIVREKVKGFARTQL 132
Query: 123 IDTKGKRG----------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
G FK+++L+E D ++++AQ +LRRTME+YS R L CN ++
Sbjct: 133 SQPTGLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 192
Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
+ E + SRC R + L IA+ E L+L G +L S LRRAI
Sbjct: 193 IIEPLASRCSKFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCSEGDLRRAITYM 252
Query: 233 ETC 235
++
Sbjct: 253 QSA 255
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I L++ V + D PHL+F GP G+GK T A+ R+V+
Sbjct: 30 VWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY-- 87
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A+
Sbjct: 88 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARA- 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 120 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 176
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE I + IA + +++ L ++ +R+AI + + V
Sbjct: 177 AVFRFTQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAV 232
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I LK+ V + D PHL+F GP G GK A+ R+V+G
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGVGKTASAQAIAREVYG- 76
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
WK N +EL+ SD D VV++ IK+ A++
Sbjct: 77 ---------DDWK-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R ++ + + IA E ++L L ++ +R+AI + V
Sbjct: 165 AVFRFTELGDDAVETQIREIAATETIELTDNGVDALVYAADGDMRKAINGLQAAAV 220
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 33/232 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP ++++ ++ LK+ V + PHLLFYGPPG+GK + I+AL R++FGP
Sbjct: 25 WVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALARELFGPE 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
+ +V +EL+ SD D V+++ +K+ A+
Sbjct: 85 LWRDRV--------------------------LELNASDERGID--VIRDKVKKFAQISV 116
Query: 122 ----PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
P K FK++VL+E D ++++AQ +LRR +E Y+ R + CN S++ E +
Sbjct: 117 RAVAPGSGKSAPPFKIIVLDEADSMTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPL 176
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+SRC R ++E LE+IA EG+++ +G L SN LR AI
Sbjct: 177 QSRCAKFRFEPLSDESQRGRLEYIANCEGVKMANGAMEALLGTSNGDLRSAI 228
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TL V+ H+ I + L+ V D H+LF GP G+GK T A+ R+++G
Sbjct: 12 VWIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYG- 70
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ + +EL+ SD D VV++ IK A+
Sbjct: 71 ---------DDWQ-----------------EHFLELNASDERGID--VVRDRIKSFART- 101
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R I+ CN SS++ + I+SRC
Sbjct: 102 ---SFGGVDYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFIMSCNYSSQIIDPIQSRC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + +E + + IA +EG++L L + +R+AI + V
Sbjct: 159 AVFRFSPLGDEAVEAEIRHIADEEGIELTDDGVDALVYAAGGDMRKAINGLQAASV 214
>gi|350296832|gb|EGZ77809.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2509]
Length = 387
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 34 WVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I + + ++L+ A ++ RY
Sbjct: 94 LIKARV----LELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPP--------- 140
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 141 ---------FKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + K LE IA+ EG+ L G L + S LR+AI ++
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAIDALIKCSEGDLRKAITYLQSA 245
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LDQ++ H++I +++ V E+ PHLLFYGPPG+GK + I A +Q++G
Sbjct: 12 WVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTIKACAKQLYG-- 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +K ++ LEL + D G VV+E IK A +
Sbjct: 70 --------KAYK------SMVLELN----------ASDDRGIG---VVREQIKTFASTKT 102
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ + GFK+++L+E D ++ +AQ +LRR +EKY+ R L CN SK++ A++SRC
Sbjct: 103 VFSA---GFKLIILDEADAMTNDAQAALRRVIEKYTKHTRFCLICNYVSKISPALQSRCT 159
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E +++ ++ + E ++ L + ++ +R+A+
Sbjct: 160 RFRFAPLATEHMIQQVQRVIDAEHIETTPAGIEALVKLASGDMRKAL 206
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 121/240 (50%), Gaps = 39/240 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V ++ + L + +CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFA-G 99
Query: 121 RPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + ++G FK+++L+E D ++ +AQ++LRRTME +S R CN S++
Sbjct: 100 VAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRII 159
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E + SRC R +EE + K + I +EGL L + L+ S LRRAI ++
Sbjct: 160 EPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQS 219
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 41/245 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD+++ H+ + + L K + + PHLLFYGPPG+GK T ++A R+++ P
Sbjct: 13 WVEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYSPA 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V +EL+ SD D VV+ I A+ +
Sbjct: 73 RMSSMV--------------------------LELNASDERGID--VVRNTIVNFAQTKG 104
Query: 123 IDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+ + FK+++L+E D ++++AQ++LRR +EKY+ + R + CN + + A
Sbjct: 105 LQSYATASSSDQVPFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPA 164
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI------- 229
I+SRC R ++ IV L+FI E +++ S L SN +R I
Sbjct: 165 IQSRCTRFRFAPLDQKLIVPRLDFIVNSENIKMTSDGRQALLTVSNGDMRTVINTLQSTA 224
Query: 230 LSFET 234
+SF+T
Sbjct: 225 MSFDT 229
>gi|336464731|gb|EGO52971.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2508]
Length = 387
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 34 WVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
++++ +++A R I + + ++L+ A ++ RY
Sbjct: 94 L----IKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPP--------- 140
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 141 ---------FKLIILDEADSMTQDAQSALRRTMEMYSKITRFCLICNYVTRIIDPLASRC 191
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + K LE IA+ EG+ L G L + S LR+AI ++
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSA 245
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 37/218 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP LD+++ H+ I + L K + + PHLLFYGPPG+GK T ++A RQ++ P
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSP- 89
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K+ + +++A R ID VV+ I A+ +
Sbjct: 90 ---TKMASMVLELNASDERGID-------------------------VVRNTIVNFAQTK 121
Query: 122 PI------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ G FK+++L+E D ++++AQ++LRR +EKY+ + R + CN + +
Sbjct: 122 GLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVP 181
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL-PSG 212
AI+SRC R ++ IV LE+I + E L++ P G
Sbjct: 182 AIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDG 219
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 31/235 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +++V +++ L + + + PHLLFYGPPG+GK + +A+ RQ++GP
Sbjct: 6 WVEKYRPKNVNEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPE 65
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + +VV+E +K A
Sbjct: 66 LMKSRV--------------------------MELNASDE--RGIHVVREKVKSFAAAAV 97
Query: 123 IDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
+K+L+L+E D ++++AQ +LRRTME YS R + CN S++ E + S
Sbjct: 98 GAPVPGYPCPPYKLLILDEADSMTQDAQSALRRTMETYSRVTRFVFICNYVSRIIEPLAS 157
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
RC R + +E I ++EG+ L G L+ S LRRAI + ++
Sbjct: 158 RCAKFRFKPLQPTVMAGRIEHICEREGVTLAPGALEALSSVSGGDLRRAITTLQS 212
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 32/205 (15%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TLD ++ ++I LKK V E++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 8 ILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 67
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+ +EL+ SD D V++ +KE A+
Sbjct: 68 DNYVEY---------------------------FLELNASDERGID--VIRNKVKEFART 98
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
G FKV++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ E I+SR
Sbjct: 99 V---IPGNVPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSR 155
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKE 205
R +E +V L +IAK E
Sbjct: 156 TALFRFYPLKKEDVVNRLVYIAKNE 180
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 32/229 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TLD ++ +DI LK+ V E++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 4 ILWAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYG 63
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
++ +EL+ SD + V++ +K+ A+
Sbjct: 64 ENYDQF---------------------------FLELNASDENGIN--VIRTKVKDFART 94
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
T G FK ++L+E D ++ +AQ +LRRTME Y+ S R IL CN SK+ + I+SR
Sbjct: 95 V---TPGNVPFKTVLLDEADNMTSDAQQALRRTMELYTESTRFILACNYLSKIIDPIQSR 151
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R +E ++ LE I K+E +Q + + + +R+AI
Sbjct: 152 TALFRFYPLKKEDVILRLENILKEEKVQYDVKSLEVVYDVTGGDMRKAI 200
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 124/234 (52%), Gaps = 27/234 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ +D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD- 90
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+++ +++A R I++ T + N +LS S R
Sbjct: 91 ----MFKDRILELNASDERGINVVRTKIK--NFSQLSASSV------------------R 126
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P D K FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ I SRC
Sbjct: 127 P-DGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 185
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + +++++ L++I EG+++ + + S LRRAI + ++C
Sbjct: 186 SKFRFKALGDDKVIDRLKYICAMEGVKIEEDAYKSIVKISGGDLRRAITTLQSC 239
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 42/246 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD V + LKK ++ + PH+LFYGPPG+GK + I+AL +Q++GP
Sbjct: 37 WVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGPN 96
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
K +V +EL+ SD G +V++ IK AK
Sbjct: 97 LYKSRV--------------------------LELNASDERGIS---IVRQKIKNFAKLT 127
Query: 120 -NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ P + + +K+++L+E D ++ +AQ +LRRTME Y+ R L CN +++
Sbjct: 128 VSNPTEDDLRNYPCPPYKIIILDEADSMTNDAQSALRRTMETYANITRFALVCNYITRII 187
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL-----PSGFATRLAEKSNRSLRRAI 229
+ + SRC R E + L++IAK+E L L P + SN +R+AI
Sbjct: 188 DPLASRCSKFRFKLLNNENSLNRLKYIAKEENLHLDEKGAPDEVLNEVLRISNGDMRKAI 247
Query: 230 LSFETC 235
++
Sbjct: 248 TYLQSA 253
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I L++ V + D PHL+F GP G+GK T A+ R+V+
Sbjct: 28 VWIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY-- 85
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A+
Sbjct: 86 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARA- 117
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 118 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 174
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE I + IA + +++ L ++ +R+AI + + V
Sbjct: 175 AVFRFTQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAV 230
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 37/235 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD V LK+ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPH 83
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
LS++ +EL+ SD G +V+E +K A+
Sbjct: 84 --------------------------LSNSRVLELNASDERGIS---IVREKVKNFARLT 114
Query: 120 -NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++
Sbjct: 115 VSKPSESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 174
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + SRC R + + L+FIA +E L+ G R+ + S LR+AI
Sbjct: 175 DPLASRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAI 229
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD++ H++I L++ V + D PHL+F GP G+GK T A+ R+V+
Sbjct: 28 VWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY-- 85
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A+
Sbjct: 86 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARA- 117
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 118 ---SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 174
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE I + IA + +++ L ++ +R+AI + + V
Sbjct: 175 AVFRFTQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAV 230
>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874706|gb|EIT83551.1| replication factor C, subunit RFC5 [Aspergillus oryzae 3.042]
Length = 398
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 37/247 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + V PHLL YGPPG+GK + I+AL R+++
Sbjct: 45 WVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARRIY--- 101
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
GS+N+ + L++++ D G VV+E IK A +
Sbjct: 102 ---------------GSKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 136
Query: 122 -----PIDTKGKR---GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
P T G +K+++L+E D ++ AQ +LRR MEKY+A+ R + N + K+
Sbjct: 137 IFSMAPQPTSGGSSLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKL 196
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ A+ SRC R + E+ I +++ + +KE +++ L + S +RRA+ +
Sbjct: 197 SPALLSRCTRFRFSPLKEQDIRSLVDLVIEKEEVKIQPEAVDSLVKLSKGDMRRALNVLQ 256
Query: 234 TCRVQQL 240
C +
Sbjct: 257 ACHASSI 263
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP++LD V H++I L+K V + D PHL+F GP G GK A+ R+++G
Sbjct: 17 IWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ + +EL+ SD D VV++ IK A++
Sbjct: 76 ---------EDWR-----------------EHFLELNASDERGID--VVRDRIKNFARS- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 107 ---SFGGVKYRIIFLDEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R ++E I IA+ EG+ L L + +R+AI + V
Sbjct: 164 AVFRFTELSDEAIEAQTREIAETEGISLTDDGVDALVYAAAGDMRKAINGLQAAAV 219
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 32/234 (13%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TLD+V+ ++I LKK V E+ PH+LF GPPG+GK T+ L ++G
Sbjct: 28 LLWAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMAHCLAHDLYG 87
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
+K +EL+ SD + V++ +KE A++
Sbjct: 88 DDYKKY---------------------------MLELNASDE--RKIEVIRGKVKEFARS 118
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R + G+ FK+++L+E D ++ +AQ +LRR ME YSA+ R IL N SK+ E I+SR
Sbjct: 119 RVV---GEVPFKIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSR 175
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
R + +E +V+ L +I E ++ + E S +RRAI +T
Sbjct: 176 TAIFRFSPLRKEDVVERLRYICNAEKVKCDERALETIYELSEGDMRRAINILQT 229
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP++LD V H++I L+K V + D PHL+F GP G GK A+ R+++G
Sbjct: 17 IWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ + +EL+ SD D VV++ IK A++
Sbjct: 76 ---------EDWR-----------------EHFLELNASDERGID--VVRDRIKNFARS- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 107 ---SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R ++E I IA+ EG+ L L + +R+AI + V
Sbjct: 164 AVFRFTELSDEAIEAQTREIAETEGISLTDDGVDALVYAAAGDMRKAINGLQAAAV 219
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 18/233 (7%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 425 WVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 484
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ ++ + G + ++ + A + + DA ++ +Y
Sbjct: 485 LYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPP---------- 534
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ E + SRC
Sbjct: 535 --------FKIIILDEADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCS 586
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + IA +EGL+L G L LRRAI ++
Sbjct: 587 KFRFKMLDNNAAGDRISNIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSA 639
>gi|398392868|ref|XP_003849893.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
gi|339469771|gb|EGP84869.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
Length = 460
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 19/243 (7%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V HQDI + K V PHLL YGPPG+GK + ++AL R+++G
Sbjct: 49 WVEKYRPSSLDDVHGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNK 108
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ V D G + ++ T SS + AG D+ Q I
Sbjct: 109 NMRQMVLELNASDDRGIDVVREQIKTFSSTKQIF-----AGSFDKSAQQSTIAN------ 157
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+K+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++ A+ SRC
Sbjct: 158 --------YKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 209
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + E I ++++ + ++E + + L S +RRA+ + C
Sbjct: 210 RFRFSPLKEVDIRQLVDKVVREEDVNIAPDATDSLVTLSKGDMRRALNVLQACHASSTPL 269
Query: 243 TMP 245
+P
Sbjct: 270 NVP 272
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 18/233 (7%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 425 WVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 484
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ ++ + G + ++ + A + + DA ++ +Y
Sbjct: 485 LYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPP---------- 534
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ E + SRC
Sbjct: 535 --------FKIIILDEADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCS 586
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + IA +EGL+L G L LRRAI ++
Sbjct: 587 KFRFKMLDNNAAGDRISNIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSA 639
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 34/230 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+ W +KYRPK+ +++ ++I L + + + PHLLFYGPPG+GK T + L R+++G
Sbjct: 6 LFWFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG 65
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK 119
+ W+ N +EL+ SD G V++E +KE A+
Sbjct: 66 ----------ERWR-----------------ENTLELNASDERGIN---VIRERVKEFAR 95
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
P G FK++VL+E D ++ +AQ +LRR ME Y+A+ R +L N S++ + I S
Sbjct: 96 TAP---AGGAPFKLVVLDEADNMTSDAQQALRRIMEMYAATTRFVLLANYVSRIIDPILS 152
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R + + + L++IA +E ++L + E S +RRAI
Sbjct: 153 RCAVFRFPPMPKPLMAQRLQYIASQERIKLTEDGIDAIYEISQGDMRRAI 202
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP++L + + I + L+ + + D PHLLF GP G GK T A+ R+V+G
Sbjct: 17 IWIEKYRPQSLGDIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGKTTAATAIAREVYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------EDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ + IA EG+++ L ++ +RRAI S +
Sbjct: 164 AVFRFSPLSDAAVAGQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V + LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPE 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R + + L +I+++E ++ SG R+ + S LRR I
Sbjct: 179 PLASRCSKFRFKALDSNNAIDRLRYISEQENVKCDSGVLERILDISAGDLRRGI 232
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V + LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPE 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R + + L +I+++E ++ SG R+ + S LRR I
Sbjct: 179 PLASRCSKFRFKALDSNNAIDRLRYISEQENVKCDSGVLERILDISAGDLRRGI 232
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 26/237 (10%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 36 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 95
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELS-PS--DAGFQDRYVVQEVIKEMA 118
+ ++ +++A R I + + V+LS P+ DA + ++Y
Sbjct: 96 LYRSRI----LELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPP------ 145
Query: 119 KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
FK+++L+E D ++++AQ +LRRTME+YS R L CN +++ E +
Sbjct: 146 ------------FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLA 193
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
SRC R L IA+ E L L +G +L S+ LRRAI ++
Sbjct: 194 SRCSKFRFKPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSA 250
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 39/235 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V ++ + L + +CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFA-G 99
Query: 121 RPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + ++G FK+++L+E D ++ +AQ++LRRTME +S R CN S++
Sbjct: 100 VAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRII 159
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +EE + K + I +EGL L + L+ S LRRAI
Sbjct: 160 EPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEALSTLSSISQGDLRRAI 214
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD + H DI LK V + D PHLLF GP G+GK T ++ R+V+
Sbjct: 18 VWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWQ-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T + I + IA E + + L ++ +R+AI + + V
Sbjct: 165 AVFRFTELTADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAV 220
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 38/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + L++ +T + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 24 WVEKYRPKTIDDVSAQEHTVAVLRRTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 83
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+ +V +EL+ SD G +V+E IK+ A+
Sbjct: 84 NFRSRV--------------------------LELNASDERGIS---IVREKIKDFARQT 114
Query: 122 PIDTKGKRG--------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
P +K+++L+E D ++++AQ +LRR ME Y R L CN +++
Sbjct: 115 PRAQAASSDDKTYPCPPYKIIILDEADSMTQDAQAALRRIMENYVRITRFCLVCNYVTRI 174
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
E + SRC R L IA E + +P L S+ LRR+I +
Sbjct: 175 IEPLASRCSKFRFKPLDNASTSARLAAIASAENIHIPDSVIDTLINTSHGDLRRSITYLQ 234
Query: 234 TC 235
+
Sbjct: 235 SA 236
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 37/235 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD V + LK+ + + PH+LFYGPPG+GK + I+AL +++FGP
Sbjct: 24 WVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGPN 83
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
K +V +EL+ SD G +V+E +K A+
Sbjct: 84 LIKSRV--------------------------LELNASDERGIS---IVREKVKNFARLT 114
Query: 120 -NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++
Sbjct: 115 VSKPSKEDLEKYPCPPYKIIILDEADSMTADAQSALRRTMETYSNITRFCLICNYVTRII 174
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + SRC R + E + L+F+A++E + ++ E S+ LRRAI
Sbjct: 175 DPLASRCSKFRFKALDETNALDRLKFVAQEENVNYKENVLEKILEISSGDLRRAI 229
>gi|224071367|ref|XP_002303425.1| predicted protein [Populus trichocarpa]
gi|222840857|gb|EEE78404.1| predicted protein [Populus trichocarpa]
Length = 432
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 29/232 (12%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W +KY+PK L I H++ A++++ V H +F GPPG GK+T+ +A+LR+ G
Sbjct: 91 WAEKYQPKALKDFICHREKAESIRSTVCRGHYNHCIFEGPPGVGKRTMALAMLRECAGMD 150
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ K E R DL + ++LS + R+ EVI ++ +
Sbjct: 151 ITETKEE---------IREFDLLI-------QIDLS------EIRWHATEVILDLLQETY 188
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I+ + +++NE ++LS++AQ ++ ++ Y C++I CC S++ + + C+
Sbjct: 189 INGQA------IIVNEAERLSKDAQLRIKSFLQTYRGHCKVIFCCYDISRLHD-LSPLCM 241
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
I + P++EQIV+VL FIAKK+ ++LP A +AEKS R L++AI SFE
Sbjct: 242 VIPLLPPSDEQIVEVLHFIAKKQDIELPDQLANNIAEKSKRCLQQAIRSFEA 293
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD V LKK +T + PH+LFYGPPG+GK + I AL R+++GP
Sbjct: 25 WVEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRELYGPE 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K A+
Sbjct: 85 LSKTRV--------------------------LELNASDE--RGIAIVREKVKNFARLTV 116
Query: 120 NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME +S R L CN +++ +
Sbjct: 117 SKPSKEALEKYPCPPYKIIILDEADSMTADAQSALRRTMENHSNVTRFCLICNYVTRIID 176
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R S E + L+ I++ E + G R+ E SN +RRAI
Sbjct: 177 PLASRCSKFRFKSLDESNAIGRLKEISQLENVPHEEGALQRILEISNGDMRRAI 230
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL +I H++I + K + E+ PHLLFYGPPG+GK + I+A RQ++ P
Sbjct: 11 WVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQLYKPQ 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
+ V +EL+ SD DR +V+ I A
Sbjct: 71 SFNQMV--------------------------LELNASD----DRGINIVRNQILNFAST 100
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I + G +K+++L+E D ++ +AQ++LRR +EKY+ + R + CN SK+ A++SR
Sbjct: 101 RTIFSGG---YKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSR 157
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R + +QI+ LE + EG+++ L + +R+ +
Sbjct: 158 CTRFRFAPLSPDQILPRLEHVIDAEGIKVSDDGKKALMTLAGGDMRKVL 206
>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
Length = 376
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 36/241 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + L+K +T + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 31 WVEKYRPKTIDDVSAQEHTVSVLQKALTSTNLPHMLFYGPPGTGKTSTILALSRQLFGPD 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + +V+E +K A+ P
Sbjct: 91 NFRSRV--------------------------LELNASDE--RGISIVREKVKNFARQTP 122
Query: 123 ----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + GK +K+++L+E D ++++AQ +LRR ME ++ R L CN +++
Sbjct: 123 RAQAVASDGKEYPCPPYKIIILDEADSMTQDAQGALRRIMETHARITRFCLVCNYVTRII 182
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
E + SRC R L +IA E + + L S LRRAI ++
Sbjct: 183 EPLASRCSKFRFTPLDSSSAAARLSYIATNENVAVSPPVIDTLISTSGGDLRRAITYLQS 242
Query: 235 C 235
Sbjct: 243 A 243
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 32/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ L ++ +I + L V + PHLLF G G GK T + L R+ F
Sbjct: 7 IWIEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLAREFF-- 64
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+W++ N EL+ SD D VV+ IK+ A+
Sbjct: 65 --------RDSWQM-----------------NFRELNASDERGID--VVRNQIKQFARTT 97
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P+ G+ FK+L L+E D L+ +AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98 PL---GEATFKILFLDEADALTTDAQAALRRTMESYAQTCRFILSCNYSSKIIDPIQSRC 154
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R E + + + IA +EGL + G + + +R+AI + + +
Sbjct: 155 AIYRFKPLGPEAVREEVRRIASREGLTITDGAMDAIVYIAQGDMRKAINALQGAAI 210
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I H+DI +++ V E PHLL YGPPG+GK + I+A RQ++
Sbjct: 16 WVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILACARQLYK-- 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D VV+ I A R
Sbjct: 74 --------------------DKEFNSMV----LELNASDDRGID--VVRGPILSFASTRT 107
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 108 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 164
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +Q++ L + ++E + + + S+ +RR++
Sbjct: 165 RFRFGPLSADQMIPRLRHVIQEESIDITEDGMKAIVTLSSGDMRRSL 211
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 121/239 (50%), Gaps = 49/239 (20%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V HQD + CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDV-AHQD-----------EVCPHMLFYGPPGTGKTTTALAIAHQLFGPE 58
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 59 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 88
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ K G FK++VL+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 89 AVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 148
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R +EE + + +I+++EGL L + + L+ S+ LRRAI ++
Sbjct: 149 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQS 207
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V H+DI +++ + + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 31 WVEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGSE 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +EL+ SD D VV+E IK+ A+ R
Sbjct: 91 YRK---------------------------QILELNASDDRGID--VVREQIKQFAETRT 121
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ K +K+++L+E D ++++AQ +LRR +E+Y+ + R + CN +K+ AI+SRC
Sbjct: 122 LFAK---SYKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCT 178
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++ K ++ + + E ++ L + S +RRA+ + C
Sbjct: 179 RFRFSPLPMAEVEKQIDHVVEAEDCKVTKDGKEALLKLSKGDMRRALNVLQAC 231
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 126/244 (51%), Gaps = 38/244 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V H+DI + + V PHLL YGPPG+GK + I+AL R+++
Sbjct: 47 WVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIY--- 103
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
GS+N+ + L++++ D G VV+E IK A +
Sbjct: 104 ---------------GSKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 138
Query: 123 I-----DTKGKR---GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I GK FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 139 IFSMAPSATGKSSLASFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLS 198
Query: 175 EAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
A+ SRC R SP +EQ ++VL + + +KE +++ L S +RRA+ +
Sbjct: 199 PALLSRCTRFRF-SPLKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQ 257
Query: 234 TCRV 237
C
Sbjct: 258 ACHA 261
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 34/235 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L+ V+ H+DI L+K ++ PH+LFYGPPG+GK + I+A R+++GP
Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPN 84
Query: 63 AEKVKVENKTWKIDAG-SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
N+ +++A R ID V+E IK A R
Sbjct: 85 -----YRNQLMELNASDDRGID-------------------------AVREQIKNFASTR 114
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
I FK+++L+E D ++ AQ++LRR +EKY+ + R + CN +K++ AI+SRC
Sbjct: 115 QI---FASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRC 171
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R ++I K ++ + + E + + S +R+A+ + C
Sbjct: 172 TRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACH 226
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD ++ H DI + + + + E PHLLFYGPPG+GK + I+A +Q++ P
Sbjct: 12 WVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 71
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
S+ +EL+ SD DR +V+ I A
Sbjct: 72 Q--------------------------FSSMVLELNASD----DRGIGIVRGQILSFAST 101
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
R I K G K+++L+E D ++ +AQ++LRR +EKY+ + R + CN K+ A++SR
Sbjct: 102 RTI---FKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSR 158
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
C R ++QIV L+ I EG+++ G L S +R+ + + ++
Sbjct: 159 CTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQS 212
>gi|346325998|gb|EGX95594.1| activator 1 subunit 3 [Cordyceps militaris CM01]
Length = 420
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 39/244 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRP +LD V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 46 WIEKYRPVSLDDVEGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGA- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A +R + LEL + D G VV+E IK A +
Sbjct: 105 --------------AQARQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 137
Query: 123 I-----------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
I + G+K+++L+E D ++ AQ +LRR MEKY+A+ R + N +
Sbjct: 138 IFNMGGAAAAAGRSSAMAGYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAH 197
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
K++ A+ SRC R + E I +++ + +EG+++ + L + S +RRA+
Sbjct: 198 KLSPALLSRCTRFRFSPLKEADIRQLVVKVVDEEGVRIGAEAVDALVKLSKGDMRRALNV 257
Query: 232 FETC 235
+ C
Sbjct: 258 LQAC 261
>gi|451849989|gb|EMD63292.1| hypothetical protein COCSADRAFT_38154 [Cochliobolus sativus ND90Pr]
Length = 416
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 6/234 (2%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL +V + Q L + + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 35 WVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYGPE 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS-DAGFQDRYVVQEVIKEMAKNR 121
K +V + G + ++ + + ++P+ + +D+ E M + R
Sbjct: 95 LMKSRVLELNASDERGISIVRQKVKDFAR-QQLSVAPTYNVMVEDKSGTGE--GGMVRYR 151
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
D FK++VL+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 152 --DKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRC 209
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + VK + IA E ++L G A L ++ LR+AI ++
Sbjct: 210 SKFRFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSA 263
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 38/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 39 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 98
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ ++ +EL+ SD + +V+E +K A+ +
Sbjct: 99 LYRSRI--------------------------LELNASDE--RGIGIVREKVKGFARTQL 130
Query: 123 IDTKGKRG----------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
G FK+++L+E D ++++AQ +LRRTME+YS R L CN ++
Sbjct: 131 SQPTGLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 190
Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
V E + SRC R + L IA+ E L+L G +L LRRAI
Sbjct: 191 VIEPLASRCSKFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCGEGDLRRAITYM 250
Query: 233 ETC 235
++
Sbjct: 251 QSA 253
>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 40/244 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 38 WVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPK 97
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+ ++ +EL+ SD G +V+E IK+ A+
Sbjct: 98 LYRSRI--------------------------LELNASDERGIN---IVREKIKDFARIQ 128
Query: 120 --NRPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
+ P R FK+++L+E D ++++AQ +LRRTME++S R L CN +
Sbjct: 129 LSHPPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVT 188
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
++ + + SRC R S LE IAK E L+L +G L S LRRAI
Sbjct: 189 RIIDPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITY 248
Query: 232 FETC 235
++
Sbjct: 249 MQSA 252
>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349579253|dbj|GAA24416.1| K7_Rfc2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764724|gb|EHN06245.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 37/247 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R + + L FI+++E ++ G R+ + S LRR I ++
Sbjct: 179 PLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 236 --RVQQL 240
R Q L
Sbjct: 239 SKRAQYL 245
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 37/247 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R + + L FI+++E ++ G R+ + S LRR I ++
Sbjct: 179 PLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 236 --RVQQL 240
R Q L
Sbjct: 239 SKRAQYL 245
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 35/239 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV KYRPKT+D V D+ LKK ++ + PHLLFYGPPG+GK + I+A+ ++GP
Sbjct: 13 WVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPE 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
K +V +EL+ SD G + +V+ IK A
Sbjct: 73 LIKQRV--------------------------LELNASDERGIE---IVRTKIKNFAGFT 103
Query: 120 -NRPIDTKGKRG--FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
N+ + G FK+++L+E D ++ +AQ +LRRT+E S + R L CN S++ +
Sbjct: 104 VNKTVSNGNNAGATFKLIILDEADSMTSDAQAALRRTIETTSKTTRFCLLCNYISRIIDP 163
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R E ++ L++I+ +EG++ + S+ +R+AI ++
Sbjct: 164 LASRCAKFRFKPLDSEATIERLKYISIQEGIKCTDSVYQAIQTVSDGDMRKAITYLQSA 222
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 36 WVEKYRPKTLSDVTAQDHTITVLERTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 95
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I + + +L+ AG++ RY
Sbjct: 96 LMKSRV----LELNASDERGISIVREKVKDFARTQLTNPPAGYKTRYPCPP--------- 142
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 143 ---------FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 193
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + + LE IA+ EG+ + L + S+ LR+AI ++
Sbjct: 194 SKFRFKSLDQGNARRRLEEIARLEGVPIEDAAVDALIKCSDGDLRKAITFLQSA 247
>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 393
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 40/244 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 38 WVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPK 97
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+ ++ +EL+ SD G +V+E IK+ A+
Sbjct: 98 LYRSRI--------------------------LELNASDERGIN---IVREKIKDFARIQ 128
Query: 120 --NRPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
+ P R FK+++L+E D ++++AQ +LRRTME++S R L CN +
Sbjct: 129 LSHPPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVT 188
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
++ + + SRC R S LE IAK E L+L +G L S LRRAI
Sbjct: 189 RIIDPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITY 248
Query: 232 FETC 235
++
Sbjct: 249 MQSA 252
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R + + L FI+++E ++ G R+ + S LRR I
Sbjct: 179 PLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGI 232
>gi|393220481|gb|EJD05967.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 370
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 38/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V + I L+K +T + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 24 WVEKYRPKTIDDVSSQEHIVAVLQKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGPD 83
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + +V+E IK A+ P
Sbjct: 84 NFKNRV--------------------------LELNASDE--RGITIVREKIKNFARQTP 115
Query: 123 ----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + GK +K+++L+E D ++ +AQ +LRR ME Y+ R L CN +++
Sbjct: 116 RAQAVASDGKTYPCPPYKIIILDEADSMTHDAQSALRRIMETYARITRFCLVCNYVTRII 175
Query: 175 EAIRSRCLNIRINSPTEEQIVKV-LEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
E + SRC R P ++ K+ L+ IA E + + + L S LRR+I +
Sbjct: 176 EPLASRCSKFRFR-PLDDSATKLRLQHIADAERVPVIPEVVSTLINVSGGDLRRSITYLQ 234
Query: 234 TC 235
+
Sbjct: 235 SA 236
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD +I H++I + + K + E PHLLFYGPPG+GK + I+A R+++ P
Sbjct: 13 WVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPA 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V D G + ++ + +S
Sbjct: 73 QFNSMVLEMNASDDRGIGIVRGQILSFASTG----------------------------- 103
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
T + GFK+++L+E D ++++AQ++LRR +EKY+ + R + CN S++ A++SRC
Sbjct: 104 --TMYRSGFKLIILDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCT 161
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +QI+ L+ I K+E L + L S +R+ +
Sbjct: 162 KFRFGPLSTDQILPRLDAIIKEENLNVSEDGKQALITLSGGDMRKVL 208
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R + + L FI+++E ++ G R+ + S LRR I
Sbjct: 179 PLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGI 232
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD +I H++I + + K + E PHLLFYGPPG+GK + I+A R+++ P
Sbjct: 13 WVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPA 72
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V D G + ++ + +S
Sbjct: 73 QFNSMVLEMNASDDRGIGIVRGQILSFASTG----------------------------- 103
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
T + GFK+++L+E D ++++AQ++LRR +EKY+ + R + CN S++ A++SRC
Sbjct: 104 --TMYRSGFKLIILDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCT 161
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +QI+ L+ I K+E L + L S +R+ +
Sbjct: 162 KFRFGPLSTDQILPRLDTIIKEENLNVSEDGKQALITLSGGDMRKVL 208
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 34/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
WV+KYRP+T+D+V +I LK+ + + D PHLLFYGPPG+GK + I+A RQ+FG
Sbjct: 37 WVEKYRPRTVDEVSEQSEIVAVLKQCLEQGADMPHLLFYGPPGTGKTSTIIAAARQLFGD 96
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK-- 119
+N+ +++A D G Q V+++ +K A+
Sbjct: 97 -----MYKNRMLELNAS---------------------DDRGIQ---VIRDKVKTFAQLT 127
Query: 120 --NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+R D K FK++VL+E D ++ AQ +LRRT+E+ + + R L CN S + + +
Sbjct: 128 ASDRRPDGKPCPPFKIVVLDEADSMTAPAQAALRRTIERETKTTRFCLICNYVSCIIDPL 187
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R + E ++ LE I K+EG++ RL + S +RRAI S ++
Sbjct: 188 TSRCSKFRFKPLSHEIMLTRLEHICKEEGVKCAPRVLARLVDASGGDMRRAITSLQS 244
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I H+DI + + + E PHLLFYGPPG+GK + I+A +Q++ P
Sbjct: 10 WVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILACAQQIYSPK 69
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
KV +EL+ SD DR +V+ I A
Sbjct: 70 EFTSKV--------------------------LELNASD----DRGIGIVRGEILSFAST 99
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ I GFK++VL+E D ++ +AQ++LRR +EK++ + R L CN SK+ A++SR
Sbjct: 100 KTI---FNTGFKLIVLDEADAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSR 156
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R T Q+ ++ + +E L + + L + + +R+A+
Sbjct: 157 CTRFRFGPLTAAQMSPRIDHVITQERLTVTADGKKALMDLAQGDMRKAL 205
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 38/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 38 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 97
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ ++ +EL+ SD + +V+E IK A+ +
Sbjct: 98 LYRSRI--------------------------LELNASDE--RGIGIVREKIKGFARTQL 129
Query: 123 IDTKGKRG----------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
G FK+++L+E D ++++AQ +LRRTME+YS R L CN ++
Sbjct: 130 SQPTGLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 189
Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
+ E + SRC R + L+ IA++E L L G +L LRRAI
Sbjct: 190 IIEPLASRCSKFRFKPLDNSAAGERLKSIAEQENLNLEDGVIEKLISCGEGDLRRAITYM 249
Query: 233 ETC 235
++
Sbjct: 250 QSA 252
>gi|342888810|gb|EGU88029.1| hypothetical protein FOXB_01512 [Fusarium oxysporum Fo5176]
Length = 1431
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 39/246 (15%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
L V+KYRP TLD V HQDI + K + + PHLL YGPPG+GK + I+AL R+++G
Sbjct: 621 LRVEKYRPNTLDDVSGHQDILATINKFIDQNRLPHLLLYGPPGTGKTSTILALARRIYGA 680
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
A R + LEL + D G VV+E IK A +
Sbjct: 681 ---------------ANMRQMVLELN----------ASDDRGID---VVREQIKTFASTK 712
Query: 122 PIDTKGK---------RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
I + G GFK++VL+E D ++ AQ +LRR MEKY+ + R + N S K
Sbjct: 713 QIFSMGGASARSGNSMAGFKLIVLDEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHK 772
Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
++ A+ SRC R SP +E ++VL + + ++E +++ L + S +RRA+
Sbjct: 773 LSPALLSRCTRFRF-SPLKEGDIRVLVDKVVEEEHVRIGGEAVDALVKLSKGDMRRALNV 831
Query: 232 FETCRV 237
+ C
Sbjct: 832 LQACHA 837
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 31/226 (13%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP+TL+ +I HQDI ++K + E PHLL YGPPG+GK + I+A +Q++
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK--- 58
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
D E ++ +EL+ SD D +++ I A R I
Sbjct: 59 -------------------DKEFGSMV----LELNASDDRGID--IIRGPILSFASTRTI 93
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 94 ---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTR 150
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 151 FRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 196
>gi|452981800|gb|EME81559.1| hypothetical protein MYCFIDRAFT_188590 [Pseudocercospora fijiensis
CIRAD86]
Length = 367
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 19/243 (7%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L V HQDI + K V PHLL YGPPG+GK + ++AL R+++G
Sbjct: 46 WVEKYRPNSLSDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARKIYGNK 105
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ V D G + ++ T SS + D QD MA
Sbjct: 106 NMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSKQD--------DSMAT--- 154
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+K+++L+E D ++ AQ +LRR ME+Y+A+ R + N + K++ A+ SRC
Sbjct: 155 --------YKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCT 206
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + E I ++++ + +EG+ + S L S +RRA+ + C
Sbjct: 207 RFRFSPLKEPDIRRLVDKVIIEEGVNIASDATDSLVTLSKGDMRRALNVLQACHASSTPL 266
Query: 243 TMP 245
+P
Sbjct: 267 HVP 269
>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
Length = 389
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 37/241 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L V QDI + K V PHLLFYGPPG+GK + ++AL RQ++G
Sbjct: 45 WVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYGA- 103
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R + LEL + D G VV+E IK A +
Sbjct: 104 --------------ANMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 I-------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I G GFK+++L+E D ++ AQ +LRR MEKY+A+ R + N S K++
Sbjct: 137 IFSLGSSSSRSGLAGFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSP 196
Query: 176 AIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R SP +E+ ++VL + + +E +++ L S +RRA+ +
Sbjct: 197 ALLSRCTRFRF-SPLKEKDIRVLVDKVIDEENVKILPDATDALVRLSKGDMRRALNVLQA 255
Query: 235 C 235
C
Sbjct: 256 C 256
>gi|398402105|ref|XP_003853207.1| replication factor C subunit 2 [Zymoseptoria tritici IPO323]
gi|339473089|gb|EGP88183.1| hypothetical protein MYCGRDRAFT_100072 [Zymoseptoria tritici
IPO323]
Length = 408
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 40/245 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V L++ + + PH+LFYGPPG+GK + ++AL +Q++GP
Sbjct: 34 WVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPE 93
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K A+
Sbjct: 94 LIKTRV--------------------------LELNASDE--RGISIVREKVKNFARMQL 125
Query: 120 -NRPIDTKGKR--------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
N P G+ +K+++L+E D ++++AQ +LRRTME YS R L CN
Sbjct: 126 SNPPSGPAGEEYRKKYSCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYV 185
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
+++ + + SRC R S E K +E IA+ E + L G L S LR+AI
Sbjct: 186 TRIIDPLASRCSKFRFKSLDEGNAGKRIEDIARLEAVTLEDGVVETLLRCSEGDLRKAIT 245
Query: 231 SFETC 235
++
Sbjct: 246 FLQSA 250
>gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 386
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 121/240 (50%), Gaps = 36/240 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 45 WVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
EN +R + LEL + D G VV+E IK A R
Sbjct: 103 -----AEN--------TRQMVLELN----------ASDDRGID---VVREQIKTFASTRQ 136
Query: 123 IDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
I +K++VL+E D ++ AQ +LRR MEKY+A+ R + N + K++ A
Sbjct: 137 IFAASSGPAPSLARYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPA 196
Query: 177 IRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R SP +E ++VL + E +++ S A L S +RRA+ + C
Sbjct: 197 LLSRCTRFRF-SPLKEADIRVLVNKVIADEDVKIMSEAADALVTLSRGDMRRALNVLQAC 255
>gi|340992727|gb|EGS23282.1| replication factor C subunit 2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 384
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 35/240 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL+ V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 36 WVEKYRPKTLNDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +++E +K+ A+
Sbjct: 96 LMKSRV--------------------------LELNASDE--RGISIIREKVKDFARTQL 127
Query: 120 -NRPIDTKGKRG---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
N P K K FK+++L+E D ++++AQ +LRRTME YS R L CN +++ +
Sbjct: 128 TNPPPGYKTKYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIID 187
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R S + K LE IA+ E + L G L S LR+AI ++
Sbjct: 188 PLASRCSKFRFKSLDQGNARKRLEEIAQLENVGLADGAVDALIRCSEGDLRKAITFLQSA 247
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 37/239 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK++D V+ ++ L++ ++ D P+LL YGPPG+GK + I+A RQ+FG
Sbjct: 38 WVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPNLLLYGPPGTGKTSTILAAARQLFG-- 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV------VQEVIKE 116
D I +EL+ SD DR + V+ +
Sbjct: 96 -------------DMFKERI------------LELNASD----DRGIAVIRNKVKTFAQL 126
Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
A D K FK+++L+E D ++ AQ +LRRTMEK + + R L CN S++ E
Sbjct: 127 TASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEP 186
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
I SRC R EE+I++ L +I +EG+ + G + + S LRRAI + ++C
Sbjct: 187 ITSRCTKFRFKPLGEEKIIERLRYICDQEGVTVDDGVYKDIVDISGGDLRRAITTLQSC 245
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 39/240 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D V+ ++ L++ ++ D P+LL YGPPG+GK + I+A RQ+FG
Sbjct: 32 WVEKYRPKNVDDVVEQGEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFG-- 89
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAK- 119
D I +EL+ SD DR V++ +K A+
Sbjct: 90 -------------DMFKERI------------LELNASD----DRGIAVIRNKVKTFAQL 120
Query: 120 ----NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
RP D K FK+++L+E D ++ AQ +LRRTMEK + + R L CN S++ E
Sbjct: 121 AASGTRP-DGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIE 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
I SRC R +E+I++ L FI +E +++ + + S LRRAI + ++C
Sbjct: 180 PITSRCTKFRFKPLRQEKIIERLRFICDQETVEVEDQAYQDIVDISGGDLRRAITTLQSC 239
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP- 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
E VK ++ +++A R I + + ++L+ G++DRY
Sbjct: 94 -EFVK--SRVLELNASDERGISIVREKVKDFARMQLTNPPPGYRDRYPCPP--------- 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK++VL+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 142 ---------FKLIVLDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + +E IA +E + L G L S LR+AI ++
Sbjct: 193 SKFRFKSLDQGNARARVEDIATREHVSLAPGAVDALIRCSEGDLRKAITFLQSA 246
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 36/250 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V HQDI + + V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 43 WVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARRIYG-- 100
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
R + LEL + D G VV+E IK A +
Sbjct: 101 -------------TKNMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 134
Query: 122 -----PIDTKGK--RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
P T G GFK+++L+E D ++ AQ +LRR ME+Y+++ R + N + K++
Sbjct: 135 IFNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTSNTRFCVIANYTHKLS 194
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R + E I +++ + + EG+++ L S +RRA+ +
Sbjct: 195 PALLSRCTRFRFSPLKEVDIRTLVDKVIENEGVRMQPDAVDSLVTLSKGDMRRALNVLQA 254
Query: 235 CRVQQLRFTM 244
C + M
Sbjct: 255 CFASSIPLPM 264
>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 37/247 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R + + L FI+++E ++ G R+ + S LRR I ++
Sbjct: 179 PLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 236 --RVQQL 240
R Q L
Sbjct: 239 SKRAQYL 245
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 121/239 (50%), Gaps = 49/239 (20%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V HQD + CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDV-AHQD-----------EVCPHMLFYGPPGTGKTTTALAIAHQLFGPE 58
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 59 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 88
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
+ K G FK++VL+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 89 AVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 148
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R +EE + + +I+++EGL L + + L+ S+ LRRAI ++
Sbjct: 149 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQS 207
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 35/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK ++ ++ ++ +++ + D P++LFYGPPG+GK ++I A RQ+FG
Sbjct: 35 WVEKYRPKNVNDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-- 92
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
++ +EL+ SD G Q VV+E IK A R
Sbjct: 93 -------------------------SMYKDRILELNASDDRGIQ---VVREKIKSFALRR 124
Query: 122 --PIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
P GK+ FK+++L+E D ++ AQ +LRR MEK S S R L CN S++ + I
Sbjct: 125 ANPNGPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKESHSTRFCLVCNYLSRIIKPI 184
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R ++E+ + LE+I +E L+ ++ E S LR+A++ ++
Sbjct: 185 ASRCTKFRFKPLSDEKSIARLEYICNEENLKADKSVLEKIVEASGGDLRQAVMCLQS 241
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +D +I H+ I + +LV +Q PHLLFYGPPG+GK ++I+A+ R+++G
Sbjct: 34 WVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKIYGKH 93
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +E + R ID VV+ IKE A +
Sbjct: 94 FSSMVLELNA----SDDRGID-------------------------VVRNQIKEFAGTKK 124
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ + G K+++L+E D ++ +AQ SLRR +EKY+ R L CN SK+ A++SRC+
Sbjct: 125 LFSSGA---KLIILDEADSMTNDAQFSLRRVIEKYTKHTRFCLICNYVSKIIPALQSRCM 181
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R Q+ ++ I E + L G L + +RR +
Sbjct: 182 RFRFAPLGVTQVGDRVKQIRDLEKIDLTDGGFDALMQLGKGDMRRIL 228
>gi|378727800|gb|EHY54259.1| replication factor C subunit 2/4 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 19/227 (8%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V + + L+++V + PHLL +GPPG+GK + I+AL R++FGP
Sbjct: 35 WVEKYRPKSLDDVKSQEHATETLRRMVHAANLPHLLLFGPPGTGKTSTILALCRELFGPE 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V+ + G I ++ +S H+ +P A ++++Y
Sbjct: 95 LMKTRVKEMNASDERGLTVIREKVKQFAS-QHLVSAPVSAEYREKYPCPP---------- 143
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
FKV++L+E D L+ +AQ +LRR +E YS + R L N S++ I SRC
Sbjct: 144 --------FKVVILDEADALTTDAQSALRRIIENYSKTTRFCLIANFVSRIIAPIASRCS 195
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R S Q ++ I E ++ G R + S+ LRRAI
Sbjct: 196 KFRFKSLEGPQASARIQDILNAEHVEYEDGVVERSLQVSDGDLRRAI 242
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 31/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRPK ++ + + + L++ + PHLLFYGPPG+GK + I+A+ R+++G
Sbjct: 12 WIEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPPGTGKTSTIVAVARELYGND 71
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K + ++EL+ SD DR VV+E +K A+
Sbjct: 72 FRK-------------------------NGRYLELNASD----DRGIKVVREKVKLFAQG 102
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
++ FK++VL+E D ++ +AQ +LRR ME YS R L CN S++ + I SR
Sbjct: 103 AINSSESMPAFKIIVLDEADSMTNDAQSALRRMMEDYSKVTRFCLICNYVSRIIDPIASR 162
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
C+ R + T+E + L +I +E L+L L + +N LR+AI ++ R
Sbjct: 163 CVKFRFSPLTKESMAARLSYIGSQENLRLDDDIIDTLLDCANGDLRKAINLMQSAR 218
>gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
Length = 340
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 31/230 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+ YRPK+LD+V Q LKK + + PH+LFYG PG+GK + I+AL R++FGP
Sbjct: 22 WVEHYRPKSLDEVSSQDMTIQVLKKTMMSNNLPHMLFYGSPGTGKTSTILALARELFGPQ 81
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +++E +K A+
Sbjct: 82 LVKSRV--------------------------LELNASDE--RGISIIREKVKNFARIAV 113
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
N ++ FK+++L+E D ++++AQ +LRRTME + R L CN +++ + + S
Sbjct: 114 NNTVNGYPCPPFKIVILDEADSMTQDAQAALRRTMEATARITRFCLVCNYVTRIIDPLAS 173
Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
RC R + I K LEFIA + + L G L S +R+AI
Sbjct: 174 RCSKYRFKPLDAQDIAKRLEFIAADQTVALEPGVIDALVSVSGGDMRKAI 223
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 34/251 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD+V+ H+DI ++L+ + PHLLFYGPPG+GK T I A +FG
Sbjct: 20 WVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGK- 78
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
++++ AN +E++ SD D VV++ ++E +
Sbjct: 79 -DRIR------------------------ANVLEMNASDDRGID--VVRQQVREFSSTSS 111
Query: 123 IDTKGK------RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
FK+++L+E D++S +AQ +LRR +EKY+ + R + CN +K+ A
Sbjct: 112 FYFASAPAAPTIAAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPA 171
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
++SRC R + ++ L+F+A++EG++ SN LRR + + +
Sbjct: 172 LQSRCTRFRFAPVKKSAMLPRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASA 231
Query: 237 VQQLRFTMPSV 247
+ T SV
Sbjct: 232 MSAGEITEESV 242
>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
subunit, putative [Candida dubliniensis CD36]
gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
Length = 339
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 119/238 (50%), Gaps = 32/238 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L++V Q+I ++K V + PHLLFYGPPG+GK + I+AL ++++G
Sbjct: 11 WVEKYRPDNLEEVKGQQEIVDTVRKFVETRKLPHLLFYGPPGTGKTSTIIALAKEIYGSI 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + +EL+ SD D VV+ IK A R
Sbjct: 71 NYKDMI--------------------------LELNASDDRGID--VVRNQIKNFASTRQ 102
Query: 123 IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
I TK FK+++L+E D ++ AQ+SLRR +EK++ +CR + N S K+ A+
Sbjct: 103 IFTKNNSINNDQFKLIILDEADAMTNIAQNSLRRVIEKFTKNCRFCILANYSHKLNPALI 162
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
SRC R I L + KE + + S L + SN +RRA+ ++C+
Sbjct: 163 SRCTRFRFTPIDISAIKDRLNIVIIKENVNISSDAIDALLKLSNGDMRRALNVLQSCK 220
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD + H DI LK V + D PHLLF GP G+GK T ++ R+V+
Sbjct: 18 VWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWQ-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T + I + IA E + + L ++ +R+AI + + V
Sbjct: 165 AVFRFTELTVDAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAV 220
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 126/251 (50%), Gaps = 34/251 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL +V+ H++I + ++L+ + PHLLFYGPPG+GK T I A ++ G
Sbjct: 20 WVEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAHYLY--G 77
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
E+++ AN +E++ SD D VV+ I+E A
Sbjct: 78 KERIR------------------------ANVLEMNASDDRGID--VVRNQIREFASTSS 111
Query: 120 ---NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
N T FK+++L+E D++S +AQ +LRR +EKY+ + R + CN +K+ A
Sbjct: 112 VFFNSASKTSAMSSFKLVILDEADQMSSDAQAALRRIIEKYTRNVRFCIVCNHINKIIPA 171
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
++SRC R + ++ L FIA++E + + SN +RR + + +
Sbjct: 172 LQSRCTRFRFAPVKKAAMLPRLAFIAQEESIPFTNDGLVAAFRLSNGDMRRCLNTLQASA 231
Query: 237 VQQLRFTMPSV 247
+ T SV
Sbjct: 232 MSTGEITEESV 242
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 123/238 (51%), Gaps = 35/238 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D V ++ LK + PHLLFYGPPG+GK + +AL R +FGP
Sbjct: 30 WVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFGPD 89
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+ ++ +EL+ SD G + VV+E IK A+
Sbjct: 90 TYRDRI--------------------------LELNASDERGIK---VVREKIKTFAQVA 120
Query: 120 -NRPIDTKGK--RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
R G FKV++L+E D ++ +AQ +LRRTME YS R L CN +++ E
Sbjct: 121 VGRATHQAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEP 180
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R ++ + ++ L +I+++E +++ + + + S +R+A+ + ++
Sbjct: 181 LASRCAKFRFSALGQGAMLDRLSYISREEDVKIAADGLQAIVDLSGGDMRKAVTAMQS 238
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK L V L++ + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 36 WVEKYRPKKLSDVTAQDHTITVLERTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 95
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I + + +L+ G++ RY
Sbjct: 96 LMKSRV----LELNASDERGISIVREKVKDFARTQLTNPPPGYKSRYPCPP--------- 142
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
FK+++L+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 143 ---------FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 193
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + + LE IAK EG+ + G L + S+ LR+AI ++
Sbjct: 194 SKFRFKSLDQGNARRRLEDIAKLEGVPIDDGAVDALIKCSDGDLRKAITFLQSA 247
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 35/231 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ L+ +I HQDI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 23 WVEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK-- 80
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
D E ++ +EL+ SD D +V+ I A R
Sbjct: 81 --------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRT 114
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 115 I---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 171
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPS----GFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + T S+ +RRA+
Sbjct: 172 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSKTLSSGDMRRAL 222
>gi|336467972|gb|EGO56135.1| hypothetical protein NEUTE1DRAFT_130196 [Neurospora tetrasperma
FGSC 2508]
gi|350289788|gb|EGZ71013.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 389
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 37/241 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +L V QDI + K V PHLLFYGPPG+GK + ++AL RQ++G
Sbjct: 45 WVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R + LEL + D G VV+E IK A +
Sbjct: 103 -------------TANMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 I-------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I G GFK+++L+E D ++ AQ +LRR MEKY+A+ R + N S K++
Sbjct: 137 IFSLGSSSSRSGLAGFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSP 196
Query: 176 AIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R SP +E+ ++VL + + +E +++ L S +RRA+ +
Sbjct: 197 ALLSRCTRFRF-SPLKEKDIRVLVDKVIDEENVKILPDATDALVRLSKGDMRRALNVLQA 255
Query: 235 C 235
C
Sbjct: 256 C 256
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 25/231 (10%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ + V +++ + L + + PHLLFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTALAICHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V D R I++ T + V + +G+ P
Sbjct: 71 LYKTRVLELNASDD---RGINVVRTKIKDFAGVAVGAGVSGY-----------------P 110
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
FKVL+L+E D ++ +AQ++LRRTME YS R CN S++ E + SRC
Sbjct: 111 CPP-----FKVLILDEADSMTEDAQNALRRTMENYSKVTRFCFICNYVSRIIEPLASRCA 165
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
R E + +++I ++EGL+L + L+ S LRRAI +
Sbjct: 166 KFRFKPLLENVMQNRIQYICQEEGLKLDQEALSTLSRVSEGDLRRAITCLQ 216
>gi|358391339|gb|EHK40743.1| hypothetical protein TRIATDRAFT_127338 [Trichoderma atroviride IMI
206040]
Length = 391
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 122/243 (50%), Gaps = 38/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ V HQDI + K V + PHLL YGPPG+GK + I+AL R+++G
Sbjct: 45 WVEKYRPVTLEDVSGHQDILATINKFVEQNRLPHLLLYGPPGTGKTSTILALARRIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V N R + LEL + D G VV+E IK A +
Sbjct: 103 -----VSNM--------RQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDTKGK--------RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I + G GFK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 137 IFSMGGGASKSNSIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLS 196
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT-RLAEKSNRSLRRAILSFE 233
A+ SRC R SP +E ++VL +E G A L + S +RRA+ +
Sbjct: 197 PALLSRCTRFRF-SPLKEGDIRVLVEKVVEEENVKIQGEAVDALVKLSKGDMRRALNVLQ 255
Query: 234 TCR 236
C
Sbjct: 256 ACH 258
>gi|452001809|gb|EMD94268.1| hypothetical protein COCHEDRAFT_1028190 [Cochliobolus
heterostrophus C5]
Length = 1071
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 6/234 (2%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL +V + Q L + + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 689 WVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYGPE 748
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS-DAGFQDRYVVQEVIKEMAKNR 121
K +V + G + ++ + + ++P+ + +D+ E M + R
Sbjct: 749 LMKSRVLELNASDERGISIVRQKVKDFAR-QQLSVAPTYNVMVEDKSGTGE--GGMVRYR 805
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
D FK++VL+E D ++++AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 806 --DKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRC 863
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R S + VK + IA E ++L G A L ++ LR+AI ++
Sbjct: 864 SKFRFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSA 917
>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ER-3]
Length = 389
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 121/243 (49%), Gaps = 38/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 35 WVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPQ 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
+ ++ +EL+ SD + +V+E IK+ A+
Sbjct: 95 LYRSRI--------------------------LELNASDE--RGISIVREKIKDFARMQL 126
Query: 120 -NRPIDTKGKR------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
+ P R FK+++L+E D ++++AQ +LRRTME+YS R L CN ++
Sbjct: 127 SHPPASDSAYRETYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 186
Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
+ + + SRC R + LE IA+ E L+L G L S LRRAI
Sbjct: 187 IIDPLASRCSKFRFKALDGSAAGSRLEKIARVEKLKLADGCVETLIRCSEGDLRRAITYL 246
Query: 233 ETC 235
++
Sbjct: 247 QSA 249
>gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC
35061]
gi|158513780|sp|A5UMF3.1|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter
smithii ATCC 35061]
Length = 315
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 33/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I + I L+K V E+ P+L+F GP G GK T +AL++ + G
Sbjct: 5 WVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILG-- 62
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ W+ N +EL+ SDA D V+ IK + +P
Sbjct: 63 --------EYWR-----------------QNFLELNASDARGID--TVRNDIKNFCRLKP 95
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+ F+++ L+EVD ++++AQH+LRR ME Y+ + IL CN SSK+ + I+SRC
Sbjct: 96 VGAP----FRIIFLDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCA 151
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E+I L++I E + G + + +R+A+
Sbjct: 152 IFRFGPIKGEEIANRLKYICTSERFEYTDGGIEAIEYFAEGDMRKAV 198
>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 389
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 121/243 (49%), Gaps = 38/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTLD V + L++ + + PH+LFYGPPG+GK + I+AL + +FGP
Sbjct: 35 WVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPQ 94
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
+ ++ +EL+ SD + +V+E IK+ A+
Sbjct: 95 LYRSRI--------------------------LELNASDE--RGISIVREKIKDFARMQL 126
Query: 120 -NRPIDTKGKR------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
+ P R FK+++L+E D ++++AQ +LRRTME+YS R L CN ++
Sbjct: 127 SHPPASDSAYRETYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 186
Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
+ + + SRC R + LE IA+ E L+L G L S LRRAI
Sbjct: 187 IIDPLASRCSKFRFKALDGSAAGSRLEKIARVEKLKLADGCVETLIRCSEGDLRRAITYL 246
Query: 233 ETC 235
++
Sbjct: 247 QSA 249
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 110/210 (52%), Gaps = 42/210 (20%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
+LW +KYRP+TLD ++ ++I LKK V E++ PHLLF GPPG+GK T +AL+ ++G
Sbjct: 8 ILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 67
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK- 119
+ +EL+ SD D V++ +KE A+
Sbjct: 68 DNYVEY---------------------------FLELNASDERGID--VIRNKVKEFART 98
Query: 120 ----NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
N P FKV++L+E D ++ +AQ +LRRTME Y+ + R IL CN SK+ E
Sbjct: 99 VIPSNVP--------FKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIE 150
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
I+SR R +E +V L +IAK E
Sbjct: 151 PIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
Length = 398
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + + + PHLL YGPPG+GK + I+AL R+++
Sbjct: 46 WVEKYRPNTLDDVSGHQDILATINRFIEANRLPHLLLYGPPGTGKTSTILALARKIY--- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
GS+N+ + L++++ D G VV+E IK A +
Sbjct: 103 ---------------GSKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 137
Query: 123 I---------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
I + FK+++L+E D ++ AQ +LRR ME+Y+A+ R + N + K+
Sbjct: 138 IFSMGPQSGSGSSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKL 197
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ A+ SRC R + E I +++ + +KE + + L S +RRA+ +
Sbjct: 198 SPALLSRCTRFRFSPLKEPDIRSLVDLVVEKEQINIQPEAVDSLVTLSKGDMRRALNVLQ 257
Query: 234 TCRVQQLRFTM 244
C + M
Sbjct: 258 ACHASSIPLPM 268
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 36/250 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD+V HQDI + + + PHLL YGPPG+GK T I+AL R+++G
Sbjct: 47 WVEKYRPNSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYG-- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
++N R + LEL + D G VV+E IK A +
Sbjct: 105 -----IKNM--------RQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 138
Query: 122 ------PIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
P + G FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 139 IFSVAAPAAKENSLGAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLS 198
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R + E I +++ + + E +++ L S +RRA+ +
Sbjct: 199 PALLSRCTRFRFSPLKEADIRSLVDKVIEAENVRIQPEATESLVRLSKGDMRRALNVLQA 258
Query: 235 CRVQQLRFTM 244
C + M
Sbjct: 259 CHASSIPLPM 268
>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
Length = 387
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 34/241 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ V H+DI + K V PHLLFYGPPG+GK + I+AL R ++
Sbjct: 45 WVEKYRPDTLNDVSGHEDILTTINKFVQTNRLPHLLFYGPPGTGKTSTILALARHIY--- 101
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
G+ NI ++ L++++ D G + VV+E IK A +
Sbjct: 102 ---------------GAHNIRQQVLELNASD-------DRGIE---VVREQIKTFASTKQ 136
Query: 123 I-----DTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
I T G+ G FK+++L+E D ++ AQ++LRR MEKY+A+ R + N + K+ A
Sbjct: 137 IFGASTKTDGELGSFKLIILDEADAMTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAA 196
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+ SRC R + + + + ++ + E +++ L + S +RR++ + C
Sbjct: 197 LLSRCTRFRFSPLPIDALRRRVDHVIDAEKVKITPSAVDALLQLSRGDMRRSLNVLQACH 256
Query: 237 V 237
Sbjct: 257 A 257
>gi|429863915|gb|ELA38322.1| replication factor c subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 389
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 37/241 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP L+ V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 44 WVEKYRPVNLNDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYG-- 101
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
EN R + LEL + D G VV+E IK A +
Sbjct: 102 -----AENM--------RQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 135
Query: 123 IDTKG---KRG----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I T G K G +K+++L+E D ++ AQ +LRR MEKY+ + R + N S K++
Sbjct: 136 IFTLGPAAKAGGMASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSP 195
Query: 176 AIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R SP +E+ ++VL + + ++E +++ S L + S +RRA+ +
Sbjct: 196 ALLSRCTRFRF-SPLKERDIRVLVDKVIEEEHVKIMSEATEALVKLSKGDMRRALNVLQA 254
Query: 235 C 235
C
Sbjct: 255 C 255
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD +I H++I + + K + E PHLLFYGPPG+GK + I+A R+++ P
Sbjct: 14 WVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILACARKLYTPA 73
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V D G + ++ + +S
Sbjct: 74 QFNSMVLEMNASDDRGINIVRGQILSFASTG----------------------------- 104
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
T + GFK+++L+E D ++ +AQ++LRR +EKY+ + R + CN SK+ A++SRC
Sbjct: 105 --TMYRSGFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R + +QI+ L+ I K+E L + L S +R+ +
Sbjct: 163 KFRFGPLSIDQILPRLDTIIKEENLNVTEDGKQALITLSGGDMRKVL 209
>gi|322698624|gb|EFY90393.1| activator 1 subunit 3 [Metarhizium acridum CQMa 102]
Length = 921
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 120/241 (49%), Gaps = 34/241 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W++KYRP TLD V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 45 WIEKYRPATLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGA- 103
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R + LEL + D G VV+E IK A +
Sbjct: 104 --------------ANMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 IDTKGKR------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
I T G GFK+++L+E D ++ AQ +LRR MEKY+ + R + N S K++ A
Sbjct: 137 IFTMGASAKSSIAGFKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPA 196
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
+ SRC R + E I ++E + ++E +Q+ L + S +RRA+ + C
Sbjct: 197 LLSRCTRFRFSPLKEGDIRVLVEKVVEEENVQIGGEAVDALIKLSKGDMRRALNVLQACH 256
Query: 237 V 237
Sbjct: 257 A 257
>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
mellifera]
Length = 303
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 124/237 (52%), Gaps = 35/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK ++ V+ ++ + L++ + D P+LLFYGPPG+GK + I+A RQ+FG
Sbjct: 7 WVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG-- 64
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+L +EL+ SD G Q VV+E IK A+
Sbjct: 65 -------------------------SLYKERVLELNASDERGIQ---VVREKIKSFAQLT 96
Query: 120 --NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
D K FK++VL+E D ++ AQ +LRRTMEK S S R L CN S++ E +
Sbjct: 97 AGGMRDDGKSCPPFKIIVLDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIEPL 156
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R E +I++ LE+I K+E L++ ++ E S LRRAI ++
Sbjct: 157 TSRCTKFRFKPLGENKIIERLEYICKEEDLKVEKPVLLKIVEVSGGDLRRAITCLQS 213
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 25/227 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ + V +++ + L+K + + PH+LFYGPPG+GK T +A+ RQ++GP
Sbjct: 9 WVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHMLFYGPPGTGKTTCALAICRQLYGPD 68
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V LEL + GF V Q V P
Sbjct: 69 LFKSRV---------------LELNASDERGISVVRNKIKGFASTAVGQAV-----PGYP 108
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+K+L+L+E D ++ +AQ +LRRTME +S R + CN S++ E I SRC
Sbjct: 109 CPP-----YKILILDEADSMTTDAQSALRRTMETHSKVTRFFILCNYVSRIIEPIASRCA 163
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E + L+ IA++EGL L G A+ S +R+AI
Sbjct: 164 KFRFKPLGSEVMSDRLKHIAEREGLTLGEGVYDAAAKHSGGDMRKAI 210
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ LD + H DI LK V + D PHLLF GP G+GK T ++ R+V+
Sbjct: 18 VWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWQ-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R + + I + IA E + + L ++ +R+AI + + V
Sbjct: 165 AVFRFTELSADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAV 220
>gi|358377812|gb|EHK15495.1| hypothetical protein TRIVIDRAFT_38974 [Trichoderma virens Gv29-8]
Length = 391
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 119/243 (48%), Gaps = 38/243 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + K V PHLL YGPPG+GK + I+AL R+++G
Sbjct: 45 WVEKYRPVTLDDVSGHQDILATINKFVESNRLPHLLLYGPPGTGKTSTILALARRIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
A R + LEL + D G VV+E IK A +
Sbjct: 103 -------------TANMRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 136
Query: 123 I--------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I + GFK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 137 IFSMGSSAAKSSSIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLS 196
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT-RLAEKSNRSLRRAILSFE 233
A+ SRC R SP +E ++VL +E G A L + S +RRA+ +
Sbjct: 197 PALLSRCTRFRF-SPLKEGDIRVLVEKVVEEENVKIQGEAVDALVKLSKGDMRRALNVLQ 255
Query: 234 TCR 236
C
Sbjct: 256 ACH 258
>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
Length = 418
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 15/238 (6%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL +V + Q L + + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 35 WVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYGPE 94
Query: 63 AEKVKVENKTWKIDAGSRNI-----DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
K +V + G + D LS A + + D + V
Sbjct: 95 LMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGEAKTV------- 147
Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
R D FK++VL+E D ++++AQ +LRRTME YS R L CN +++ + +
Sbjct: 148 ---RYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPL 204
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
SRC R S + VK + IAK E + L A L ++ LR+AI ++
Sbjct: 205 ASRCSKFRFKSLDQGNAVKRVSDIAKLENVSLEDDVAEELVRVADGDLRKAITFLQSA 262
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 35/249 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD+V HQDI + + + PHLL YGPPG+GK T I+AL R+++
Sbjct: 46 WVEKYRPSSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIY--- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
GS+N+ + L++++ D G VV+E IK A +
Sbjct: 103 ---------------GSKNMRQMVLELNASD-------DRGID---VVREQIKTFASTKQ 137
Query: 122 ------PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
P FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 138 IFSVAAPAKENSLGAFKLIILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSP 197
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
A+ SRC R + E I +++ + + E +++ L S +RRA+ + C
Sbjct: 198 ALLSRCTRFRFSPLKEVDIRSLVDKVIEAENVRIQPQAIESLVRLSKGDMRRALNVLQAC 257
Query: 236 RVQQLRFTM 244
+ M
Sbjct: 258 HASSIPLPM 266
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 35/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V+ ++ + L++ + D P+LLFYGPPG+GK + I+A RQ+FG
Sbjct: 34 WVEKYRPKNVKDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG-- 91
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+L +EL+ SD G Q VV+E IK A+
Sbjct: 92 -------------------------SLYKERVLELNASDERGIQ---VVREKIKSFAQLT 123
Query: 120 --NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
D K FK+++L+E D ++ AQ +LRRTMEK S S R L CN S++ E +
Sbjct: 124 AGGIRDDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIEPL 183
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R E +I++ LE+I K+E L++ ++ E S LRRAI ++
Sbjct: 184 TSRCTKFRFKPLGENKIIERLEYICKEEDLKVEKPVLLKIVEVSGGDLRRAITCLQS 240
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 114/232 (49%), Gaps = 35/232 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WVDKYRPK + V ++ L+K + + PH+LFYGPPG+GK T +A+ +Q++GP
Sbjct: 26 WVDKYRPKKVSDVAYQTEVVSALEKAMETHNLPHMLFYGPPGTGKTTCALAICKQLYGPE 85
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + VV+ IK A
Sbjct: 86 LGKKRV--------------------------LELNASDE--RGISVVRGKIKSFASTTV 117
Query: 123 IDTKGKRGF-----KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
+G G+ K+L+L+E D ++ +AQ +LRR ME YS R + CN SK+ + I
Sbjct: 118 --GEGVPGYPCPPYKILILDEADSMTNDAQSALRRMMETYSRVTRFFILCNYVSKIIDPI 175
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
SRC R S + + + FIAK E LQL G L S +R+AI
Sbjct: 176 SSRCAKFRFKSLDGGTMHERINFIAKGENLQLAEGTLQALEHVSAGDMRKAI 227
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 35/237 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ +D ++ ++ +++ + D P++LFYGPPG+GK ++I A RQ+FG
Sbjct: 67 WVEKYRPRNVDDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-- 124
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
++ +EL+ SD G Q VV++ IK A R
Sbjct: 125 -------------------------SMYKDRILELNASDDRGIQ---VVRDKIKSFALRR 156
Query: 122 --PIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
P GK+ FK+++L+E D ++ AQ +LRR MEK S S R L CN S++ + I
Sbjct: 157 ANPNGPDGKKCPPFKIVILDEADSMTGAAQTALRRIMEKESHSTRFCLVCNYLSRIIKPI 216
Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R T+E+ + LE+I +E L+ ++ + S LR+A++ ++
Sbjct: 217 ASRCTKFRFKPLTDEKSIARLEYICNEENLKADRSVLEKIVQASGGDLRQAVMCLQS 273
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 37/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT++++ + L + +T + PH+LFYGPPG+GK + I+AL R++FGP
Sbjct: 31 WVEKYRPKTINEISAQEHTTSVLSRTLTSANLPHMLFYGPPGTGKTSTILALARELFGPD 90
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +V +EL+ SD + +V++ IK A+ P
Sbjct: 91 NFRNRV--------------------------LELNASDE--RGISIVRDKIKNFARQTP 122
Query: 123 -----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
+ + GK +K+++L+E D ++++AQ +LRR ME Y+ R L CN +++
Sbjct: 123 RAQQAVSSDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYAKITRFCLVCNYVTRI 182
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
E + SRC R + L +IA+ E + + L S+ LRRAI +
Sbjct: 183 IEPLASRCSKFRFTPLDPDSASARLSYIAQAENIDISKPVIDALISTSHGDLRRAITYLQ 242
Query: 234 TC 235
+
Sbjct: 243 SA 244
>gi|374724905|gb|EHR76985.1| replication factor C small subunit [uncultured marine group II
euryarchaeote]
Length = 328
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 32/242 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
LWV+++RP+ + ++ I Q L +++ PHLLF GPPG+GK T MAL + VFG
Sbjct: 15 LWVERHRPQAVSEIRGQHAIVQRLAVYSEKKEFPHLLFAGPPGTGKTTAAMALTKDVFG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
E+ + RN+ +E++ SD + ++ +K+ A+
Sbjct: 74 --EEYR------------RNL------------LEMNASDE--RKLESIRTKVKQFARTS 105
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P G FK++ L+E D L+ +AQ +LRR ME+Y+ +CR IL CN SSK+ E I+SRC
Sbjct: 106 PY---GGAQFKIIFLDEADALTNDAQGALRRIMEQYAETCRFILSCNYSSKIIEPIQSRC 162
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
R ++ + + +A+ EG++L L S LR+A+ + +
Sbjct: 163 AVFRFRPLSDADVNAQIHHVAEIEGVKLEDDAGDALTRISQGDLRKALTGLQVASAINMH 222
Query: 242 FT 243
T
Sbjct: 223 IT 224
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 33/234 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TL+ + ++ + L+ + + PHLLF GP G GK + A+ R+++G
Sbjct: 15 IWIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYG- 73
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A++
Sbjct: 74 ---------DDWR-----------------GNFLELNASDERGID--VVRDRIKSFARS- 104
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
G ++++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 105 ---AFGGHDYRIIFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 161
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + ++E I L IA+ E +++ L +N +RR I S +
Sbjct: 162 AVFRFSPLSDEAIANQLGEIAEIEAIEVTDEGFDALVYAANGDMRRGINSLQAA 215
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 34/251 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V+ H++I ++L+ PHLLFYGPPG+GK T I A +F G
Sbjct: 20 WVEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPPGTGKTTTIKACAHHLF--G 77
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
E+++ AN +E++ SD D VV++ ++E A
Sbjct: 78 KERLR------------------------ANVLEMNASDDRGID--VVRQQVREFASTSS 111
Query: 123 IDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
I + G FK+++L+E D++S +AQ +LRR +EK++ + R + CN +K+ A
Sbjct: 112 IFFQNNPGNQTVTNFKLVILDEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPA 171
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
++SRC R + + ++ L+ IA++EG+ S+ +RR + + +
Sbjct: 172 LQSRCTRFRFSPVKKSAMLPRLKLIAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQASS 231
Query: 237 VQQLRFTMPSV 247
+ T SV
Sbjct: 232 MSAGEITEESV 242
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 33/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV++YRPK++D+V Q L+K +T + PH+LFYGPPG+GK + I+AL RQ++GP
Sbjct: 9 WVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQLYGPE 68
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
+ +V +EL+ SD G VV++ IK A+
Sbjct: 69 LMRSRV--------------------------LELNASDERGIS---VVRDKIKSFARAA 99
Query: 120 -NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
+ P +K+++L+E D ++++AQ +LRR ME+YS R L CN +++ E +
Sbjct: 100 VSAPNPDYPSPPYKIVILDEADSMTQDAQGALRRIMEQYSRITRFCLVCNYVTRIIEPVA 159
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R L IA+ EGL+L L S +RR+I ++
Sbjct: 160 SRCSKFRFRPLDVASTEARLLHIAQMEGLRLNPDLVPVLIRSSEGDMRRSITYLQS 215
>gi|440638884|gb|ELR08803.1| replication factor C subunit 3/5 [Geomyces destructans 20631-21]
Length = 393
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 38/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ V HQDI + + V PHLL YGPPG+GK + ++AL R+++G
Sbjct: 48 WVEKYRPDTLEDVSGHQDIIATINRFVETNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 105
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
V+N R + LEL + D G VV+E IK A R
Sbjct: 106 -----VKNM--------RQMVLELN----------ASDDRGID---VVREQIKTFASTRQ 139
Query: 122 -----PIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
P + GK +K+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 140 IFSSAPSEASGKSMATYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLS 199
Query: 175 EAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
A+ SRC R SP +E+ ++VL + + ++E + + L + S +RRA+ +
Sbjct: 200 PALLSRCTRFRF-SPLKERDIRVLVDKVIEEETVNITREATEALTKLSKGDMRRALNVLQ 258
Query: 234 TC 235
C
Sbjct: 259 AC 260
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 34/233 (14%)
Query: 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
M WV+KYRP +L +V+ H +I + L KL+ E PHLLFYGPPG+GK + I+A + ++
Sbjct: 15 MPWVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMYA 74
Query: 61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV--VQEVIKEMA 118
P +L+++ +EL+ SD DR + V+E I A
Sbjct: 75 PK----------------------QLSSMV----LELNASD----DRGIGIVREQIINFA 104
Query: 119 KNRPI--DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
+ + D K K++VL+E D ++++AQ +LRR +EK++ + R + CN SK+ A
Sbjct: 105 QTSTLSMDKNQKSMPKLIVLDEADAMTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPA 164
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
I+SRC +R EQI+ L +I + E L + L + +RR I
Sbjct: 165 IQSRCTRLRFAPLPNEQILPRLHYIVQAESLTITKDGQNALLNLAEGDMRRII 217
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 39/235 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V +++ + L + +CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKNFAA- 99
Query: 121 RPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + + G +K+++L+E D ++ +AQ++LRRTME YS R CN S++
Sbjct: 100 VAVGSGQRAGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRII 159
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +EE + + I ++EGL L + + L+ S LRRAI
Sbjct: 160 EPLASRCAKFRFKPLSEEIMSSRVLHICREEGLNLDAEALSTLSYVSQGDLRRAI 214
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 23/234 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQN-LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
WV+KYRPK LD V QD A N LKK + + PH+LFYGPPG+GK + ++AL R+++GP
Sbjct: 22 WVEKYRPKNLDDV-ASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP 80
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V + G + + N L+ S+A +D
Sbjct: 81 DLIKSRVLELNASDERG-----IAIVRQKVKNFARLTVSNASPED--------------- 120
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 121 -LEKYPCPPYKLIILDEADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRC 179
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
R + V+ L +I ++E L + + L SN LRRAI ++
Sbjct: 180 SKFRFKPLANDNAVQRLRYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQSA 233
>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
Length = 396
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 118/244 (48%), Gaps = 37/244 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + K + PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYGSN 106
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ V +EL+ SD D VV+E IK A +
Sbjct: 107 NMRQMV--------------------------LELNASDDRGID--VVREQIKTFASTKQ 138
Query: 123 I---------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
I FK+++L+E D ++ AQ +LRR ME+Y+A+ R + N + K+
Sbjct: 139 IFSMAAPSASSGSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKL 198
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ A+ SRC R + E+ I +++ + +KE + + + L S +RRA+ +
Sbjct: 199 SPALLSRCTRFRFSPLKEQDIRSLVDQVIEKEQIHIQPEAVSSLVRLSKGDMRRALNVLQ 258
Query: 234 TCRV 237
C
Sbjct: 259 ACHA 262
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 116/236 (49%), Gaps = 32/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W+++YRP L ++ +I + L V + PHLLF G G GK T +AL R+ FG
Sbjct: 8 IWIERYRPTRLADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALAREFFG- 66
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W I N E++ SD D VV+ IK+ A+
Sbjct: 67 ---------EAWHI-----------------NFREMNASDERGID--VVRNQIKQFARTS 98
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P++ FK+L L+E D L+ +AQ +LRRTME YS CR IL CN SSK+ + I+SRC
Sbjct: 99 PLEGAE---FKILFLDEADALTTDAQAALRRTMETYSRGCRFILSCNYSSKIIDPIQSRC 155
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T E I + + IA KEG+ + + + +R+AI + + +
Sbjct: 156 AIYRFRPLTPEAISEEIGKIAGKEGITVTPDAIEAIVYIAQGDMRKAINALQGASI 211
>gi|357617013|gb|EHJ70534.1| replication factor C4 [Danaus plexippus]
Length = 350
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 38/241 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D ++ ++ Q L++ + D PHLLFYGPPG+GK + I+A RQ+FG
Sbjct: 32 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG-- 89
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
++ +EL+ SD G Q V+++ +K A+
Sbjct: 90 -------------------------DITRERVLELNASDERGIQ---VIRDKVKTFAQLT 121
Query: 120 ---NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
RP D + +K+++L+E D ++ AQ +LRRTME+ + + R L CN S++
Sbjct: 122 VSNTRP-DGRPCPPYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRIIPP 180
Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA-EKSNRSLRRAILSFETC 235
I SRC R E ++K L+ + K E +++ G A + LRRA+ + + C
Sbjct: 181 ITSRCSKFRFKPLARENVIKRLQEVCKSEAVEVGDGEVLHQAVDTCGGDLRRALTALQCC 240
Query: 236 R 236
+
Sbjct: 241 Q 241
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 37/235 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK L+ V + LKK + + PH+LFYGPPG+GK + I+AL +++FGP
Sbjct: 25 WVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGPE 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K +V +EL+ SD + +V+E +K A+
Sbjct: 85 LMKTRV--------------------------LELNASDE--RGISIVREKVKNFAR-LT 115
Query: 123 IDTKGKRG--------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ T K +K+++L+E D ++ +AQ +LRRTME YS R L CN +++
Sbjct: 116 VTTPSKEDLERHPCPPYKIIILDEADSMTADAQSALRRTMETYSNVTRFCLICNYVTRII 175
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ + SRC R + L++IA +E L L G ++ + S LR+ I
Sbjct: 176 DPLASRCSKFRFKPLDNSNALTRLQYIASEESLTLADGALDKILDISEGDLRKGI 230
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 39/235 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V ++ + L + +CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAX- 99
Query: 121 RPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + ++G +K+++L+E D ++ +AQ++LRRTME YS R CN S++
Sbjct: 100 VAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 159
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +EE + + I K+E L L S + L+ S LRRAI
Sbjct: 160 EPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAI 214
>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 33/238 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
W +KYRPKT+D V+ +++ LKK + + PHLLFYGPPG+GK + A+ +Q+FGP
Sbjct: 9 WTEKYRPKTVDDVVHQEEVVSALKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQLFGPE 68
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
K +V +++A R I++ T + + +S + G
Sbjct: 69 LYKTRV----LELNASDERGINVIRTKVKTFAQTAVSENPTG------------------ 106
Query: 122 PIDTKGKR---GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
KGK FK+++L+E D ++ +AQ +LRRTME YS R L CN S++ + I
Sbjct: 107 ----KGKYPCPPFKIIILDEADSMTVDAQSALRRTMETYSNVTRFCLICNYVSRIIDPIT 162
Query: 179 SRCLNIRINSPTEEQIVKV-LEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
SRC R P E ++K L++IA +EG+ L + S LR+AI + ++
Sbjct: 163 SRCAKFRFK-PLEYSLLKERLQYIANQEGITLKDEKVLDTIVGHSEGDLRKAITTLQS 219
>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus Af293]
gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus A1163]
Length = 396
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 119/244 (48%), Gaps = 37/244 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V HQDI + K + PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYGSN 106
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ V +EL+ SD D VV+E IK A +
Sbjct: 107 NMRQMV--------------------------LELNASDDRGID--VVREQIKTFASTKQ 138
Query: 123 I---------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
I FK+++L+E D ++ AQ +LRR ME+Y+A+ R + N + K+
Sbjct: 139 IFSMAAPSASSGSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKL 198
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ A+ SRC R + E+ I +++ + +KE +++ + L S +RRA+ +
Sbjct: 199 SPALLSRCTRFRFSPLKEQDIRSLVDQVIEKEQIRIQPEAVSSLVRLSKGDMRRALNVLQ 258
Query: 234 TCRV 237
C
Sbjct: 259 ACHA 262
>gi|448509973|ref|ZP_21615854.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
gi|445696314|gb|ELZ48405.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
Length = 208
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 33/225 (14%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+TLD + ++I + L+ + + D PHLLF GP G GK T A+ R+++G
Sbjct: 17 IWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYG- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
W+ N +EL+ SD D VV++ IK A+
Sbjct: 76 --------EDNWR-----------------GNFLELNASDQRGID--VVRDRIKGFAR-- 106
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ F+++ L+E D L+ +AQ +LRRTME++S + R IL CN SSK+ + I+SRC
Sbjct: 107 ---SSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226
R + ++E + ++ IA E +++ L ++ +R
Sbjct: 164 AVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMR 208
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 32/227 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V +I L K + E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 8 WVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALAREIYGKN 67
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ +E + R ID VV+ IKE A R
Sbjct: 68 YSHMVLELNA----SDDRGID-------------------------VVRNQIKEFASTRQ 98
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I + RGFK+++L+E D ++ AQ++LRR +EKY+ + R + N S K+T A++SRC
Sbjct: 99 IFS---RGFKLVILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALQSRCT 155
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R E+ I + + + E L++ L + S +RR +
Sbjct: 156 RFRFQPLPEDAIKRRIANVLVHEHLRVSEDAVQALIKLSKGDMRRVL 202
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 37/241 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V + LK+ + + PH+LFYGPPG+GK + I+AL + ++GP
Sbjct: 24 WVEKYRPKSLDDVASQDHTVKVLKRTLVSANLPHMLFYGPPGTGKTSTILALAKSLYGPI 83
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAK-- 119
K +V +EL+ SD G +V++ IK A+
Sbjct: 84 LFKSRV--------------------------LELNASDERGIS---IVRQKIKNFARLT 114
Query: 120 ---NRPIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
P D + +K+++L+E D ++ +AQ +LRRTME YS R L CN +++
Sbjct: 115 ISNPSPEDLEKYPCPPYKIIILDEADSMTNDAQSALRRTMETYSGVTRFCLVCNYITRII 174
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ + SRC R + L++IA EG++ G + + SN LRRAI ++
Sbjct: 175 DPLASRCSKFRFKPLNNSDALGRLQYIAGHEGIEAEEGTLEEVLKISNGDLRRAITYLQS 234
Query: 235 C 235
Sbjct: 235 A 235
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 39/235 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V ++ + L + +CPH+LFYGPPG+GK T +A+ Q+FGP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAA- 99
Query: 121 RPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + ++G +K+++L+E D ++ +AQ++LRRTME YS R CN S++
Sbjct: 100 VAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 159
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +EE + + I K+E L L S + L+ S LRRAI
Sbjct: 160 EPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAI 214
>gi|392595637|gb|EIW84960.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 369
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 40/242 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKT+D+V + L+K + + PH+LFYGPPG+GK + I+AL RQ+FGP
Sbjct: 22 WVEKYRPKTIDEVSAQEHAVAVLRKTLFSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 81
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
+ +V +EL+ SD DR +V+E IK A+
Sbjct: 82 NFRNRV--------------------------LELNASD----DRGISIVREKIKNFARQ 111
Query: 121 RP----IDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
P + + GK +K+++L+E D ++++AQ +LRR ME Y+ R L CN ++
Sbjct: 112 TPRAQAVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTR 171
Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
+ E + SRC R L IA +E + + L + S+ LRR+I
Sbjct: 172 IIEPLASRCSKFRFTPLDSSSTSNRLSHIAAQEHVDVSPEVIQALIDTSSGDLRRSITYL 231
Query: 233 ET 234
++
Sbjct: 232 QS 233
>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
Length = 443
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 36/250 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL+ V H DI + + + + PHLL YGPPG+GK + I+AL R+++G
Sbjct: 47 WVEKYRPNTLEDVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYG-- 104
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
V+N R + LEL + D G VV++ IK A +
Sbjct: 105 -----VKNM--------RQMVLELN----------ASDDRGID---VVRDQIKTFASTKQ 138
Query: 123 I-----DTKGKR---GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
I TK + FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 139 IFSVAPSTKSESTLGAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLS 198
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
A+ SRC R + EE I +++ + +KE +++ L + S +RRA+ +
Sbjct: 199 PALLSRCTRFRFSPLKEEDIRVLVDQVVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQA 258
Query: 235 CRVQQLRFTM 244
C + M
Sbjct: 259 CHASSIPLPM 268
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 36/187 (19%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL++V+ H+DI ++K +T PHLLFYGPPG+GK + I+A+ RQ++
Sbjct: 27 WVEKYRPSTLEEVVSHKDIIYTIQKFITSNRLPHLLFYGPPGTGKTSTILAIARQLYQ-- 84
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDR--YVVQEVIKEMAK 119
T +S N+V EL+ SD DR VV+E IK A
Sbjct: 85 ------------------------TPMSFKNNVLELNASD----DRGIEVVREQIKNFAS 116
Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
R + + GFK+++L+E D+++ AQ +LRR +E+Y+ + R + CN ++++ AI+S
Sbjct: 117 ARMVFSS---GFKLIILDEADQMTTTAQSALRRVIEQYTKNVRFCIICNYVNRISPAIQS 173
Query: 180 RCLNIRI 186
RC R
Sbjct: 174 RCTKFRF 180
>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 35/251 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V H+DI + K V PHLL YGPPG+GK + ++AL R+++G
Sbjct: 45 WVEKYRPTSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
NK R + LEL + D G VV+E IK + +
Sbjct: 103 -------NKNM------RQMVLELN----------ASDDRGID---VVREQIKTFSSTKQ 136
Query: 123 IDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I + + FK+++L+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 137 IFSAAPKAGDSALATFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSP 196
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
A+ SRC R + ++ I +++ + + E + + A+ L S +RRA+ + C
Sbjct: 197 ALLSRCTRFRFSPLKDQDIRNLVDKVIEDEKVNITQDAASSLVTLSKGDMRRALNVLQAC 256
Query: 236 RVQQLRFTMPS 246
P
Sbjct: 257 HASSTPLQPPG 267
>gi|367014065|ref|XP_003681532.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
gi|359749193|emb|CCE92321.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
Length = 336
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V ++ +++ + E PHLLFYGPPG+GK + ++AL R+++G
Sbjct: 13 WVEKYRPATLDDVYGQNEVVGTVRRFIEEGQLPHLLFYGPPGTGKTSTVVALAREIYG-- 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K + N+ LEL + D G VV+ IK+ A R
Sbjct: 71 --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 103
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +EKY+ + R + N + K+T A+ SRC
Sbjct: 104 IFSK---GFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCT 160
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R E + + + + E L++ + L + S +RR + + C+
Sbjct: 161 RFRFQPLPTEALERRMNKVLSNEHLKMTTSAKEALLKLSRGDMRRVLNVLQACK 214
>gi|302413517|ref|XP_003004591.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
gi|261357167|gb|EEY19595.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
Length = 391
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 125/254 (49%), Gaps = 39/254 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL V H DI + K V + PHLL YGPPG+GK + I+AL R+++GP
Sbjct: 44 WVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARRIYGP- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
EN R + LEL + D G VV+E IK A +
Sbjct: 103 ------EN--------VRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 135
Query: 123 IDT---------KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
I T G G+K++VL+E D ++ AQ +LRR MEKY+A+ R + N + K+
Sbjct: 136 IFTSARSGSGSSSGAAGYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKL 195
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
+ A+ SRC R SP +E ++VL + + +EG+++ L + +RRA+
Sbjct: 196 SPALLSRCTRFRF-SPLKEGDIRVLVDRVVDEEGVRIRPDATDALVRLAKGDMRRALNVL 254
Query: 233 ETCRVQQLRFTMPS 246
+ C P
Sbjct: 255 QACHASSTPLRGPG 268
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 29/245 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+K+RPK+L V H+DI + KL +E PHLL YGPPG+GK + I+A+ R+++G
Sbjct: 42 WVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
N+ LEL + D G VV++ I++ A +
Sbjct: 100 --------------TNYHNMILELN----------ASDDRGID---VVRQQIQDFASTQS 132
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
K K+++L+E D ++++AQ +LRR +EKY+ + R L CN +K+ A++SRC
Sbjct: 133 FSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCT 192
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF 242
R + + L ++ + E L + G L +R+A+ ++ +
Sbjct: 193 RFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHI 252
Query: 243 TMPSV 247
T +V
Sbjct: 253 TEEAV 257
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 23/240 (9%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
K ++ LEL S + + R V + K +N P
Sbjct: 87 LMKSRI---------------LELNA-SDERGISIVREKVKIFARLTVSKPSKHDLENYP 130
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
+K+++L+E D ++ +AQ +LRRTME YS R L CN +++ + + SRC
Sbjct: 131 CPP-----YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCS 185
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC--RVQQL 240
R + + L FI+++E ++ G + + S LRR I ++ R Q L
Sbjct: 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLEXILDISAGDLRRGITLLQSASKRAQYL 245
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 127/247 (51%), Gaps = 37/247 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV++YRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVERYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPE 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS+ R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
+ SRC R + + L +I+++E ++ +G R+ + S LRR I ++
Sbjct: 179 PLASRCSKFRFKALDANNAIDRLRYISEQENVKCDAGVLERILDISAGDLRRGITLLQSA 238
Query: 236 --RVQQL 240
R Q L
Sbjct: 239 SKRAQYL 245
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD+V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K ++ +EL+ SD + +V+E +K A+
Sbjct: 87 LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ S+C R + + L FI+++E ++ G R+ + S LRR I
Sbjct: 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGI 232
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 40/245 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK+LD V L++ + + PH+LFYGPPG+GK + ++AL +Q++GP
Sbjct: 36 WVEKYRPKSLDDVAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPE 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K+ A+
Sbjct: 96 LIKSRV--------------------------LELNASDE--RGISIVREKVKDFARMQL 127
Query: 120 -NRPIDTKGKR--------GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
N P G+ +K++VL+E D ++++AQ +LRRTME YS R L CN
Sbjct: 128 SNPPAGPAGEEYRKKYPCPPYKIIVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYV 187
Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
+++ + + SRC R E + +E IA+ E + L G L S+ LR+AI
Sbjct: 188 TRIIDPLASRCSKFRFKLLDEGNAGRRIEDIARLENVTLEEGVTNTLLRCSDGDLRKAIT 247
Query: 231 SFETC 235
++
Sbjct: 248 FLQSA 252
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ L+ + H DI LK V + D PHLLF GP G+GK T ++ R+V+
Sbjct: 48 VWIEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVY-- 105
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 106 --------DDDWQ-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 137
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 138 ---SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 194
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R T + I + IA E + + L ++ +R+AI + + V
Sbjct: 195 AVFRFTELTADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAV 250
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 32/234 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TLD V ++I ++K V E PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 12 WVEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALAREIYGKN 71
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
N+ LEL + D G VV+ IKE A R
Sbjct: 72 YS----------------NMVLELN----------ASDDRGID---VVRNQIKEFASTRQ 102
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I +K GFK+++L+E D ++ AQ++LRR +EKY+ + R + N + K+T A+ SRC
Sbjct: 103 IFSK---GFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCT 159
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
R + I + + E L+L L + S +RR + + R
Sbjct: 160 RFRFQPLPSDAIETRIANVLVHENLKLNDTAKRALLDLSKGDMRRVLNVLQASR 213
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 36/241 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPKTL V L++ + + PH+LFYGPPG+GK + ++AL +++FGP
Sbjct: 36 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGPE 95
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
+ +V +EL+ SD + +V+E +K+ A+
Sbjct: 96 LMRSRV--------------------------LELNASDE--RGISIVREKVKDFARMQL 127
Query: 120 -NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
N P + FK+++L+E D ++++AQ +LRRTME YS R L CN +++
Sbjct: 128 TNPPPGYDRSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 187
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ + SRC R S + LE IA+KE + L G L + S LR+AI ++
Sbjct: 188 DPLASRCSKFRFKSLDQGNAKARLEHIAEKECVALEPGAVDALIKSSEGDLRKAITFLQS 247
Query: 235 C 235
Sbjct: 248 A 248
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 123/235 (52%), Gaps = 40/235 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+++V +EL+ SD G Q VV+E +K A+
Sbjct: 100 LFRLRV--------------------------LELNASDERGIQ---VVREKVKNFAQ-- 128
Query: 122 PIDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ G R FK+++L+E D ++ AQ +LRRTMEK S + R L CN S++
Sbjct: 129 -LTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRII 187
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +++ + L IAKKE +++ L + S LR+AI
Sbjct: 188 EPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAI 242
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 118/236 (50%), Gaps = 33/236 (13%)
Query: 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
+W++KYRP+ L + H DI L+ V + D PHLLF GP G+GK T A+ R+V+
Sbjct: 18 VWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVY-- 75
Query: 62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ W+ N +EL+ SD D VV++ IK+ A++
Sbjct: 76 --------DDDWR-----------------ENFLELNASDQRGID--VVRDRIKDFARS- 107
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
+ G +++ L+E D L+ +AQ +LRRTME++S + R IL CN SS++ + I+SRC
Sbjct: 108 ---SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRC 164
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
R TE I + IA E + + L ++ +R+AI + V
Sbjct: 165 AVFRFTELTENAIEAQVREIAANEEIDVTDDGVDALVFAADGDMRKAINGLQAAAV 220
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 123/235 (52%), Gaps = 40/235 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+++V +EL+ SD G Q VV+E +K A+
Sbjct: 100 LFRLRV--------------------------LELNASDERGIQ---VVREKVKNFAQ-- 128
Query: 122 PIDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ G R FK+++L+E D ++ AQ +LRRTMEK S + R L CN S++
Sbjct: 129 -LTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRII 187
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +++ + L IAKKE +++ L + S LR+AI
Sbjct: 188 EPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAI 242
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 123/235 (52%), Gaps = 40/235 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+++V +EL+ SD G Q VV+E +K A+
Sbjct: 100 LFRLRV--------------------------LELNASDERGIQ---VVREKVKNFAQ-- 128
Query: 122 PIDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ G R FK+++L+E D ++ AQ +LRRTMEK S + R L CN S++
Sbjct: 129 -LTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRII 187
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +++ + L IAKKE +++ L + S LR+AI
Sbjct: 188 EPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAI 242
>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
Length = 342
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 31/226 (13%)
Query: 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63
V+KYRP+TL+ +I H+DI ++K ++E PHLL YGPPG+GK + I+A +Q++
Sbjct: 25 VEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK--- 81
Query: 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI 123
D E ++ +EL+ SD D +V+ I A R I
Sbjct: 82 -------------------DKEFGSMV----LELNASDDRGID--IVRGPILSFASTRTI 116
Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
K+GFK+++L+E D ++++AQ++LRR +EK++ + R L CN SK+ A++SRC
Sbjct: 117 ---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTR 173
Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
R T E +V LE + ++E + + L S+ +RRA+
Sbjct: 174 FRFGPLTPELMVPRLEHVVEEEKVYVSEDGMKALITLSSGDMRRAL 219
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 123/235 (52%), Gaps = 40/235 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+++V +EL+ SD G Q VV+E +K A+
Sbjct: 100 LFRLRV--------------------------LELNASDERGIQ---VVREKVKNFAQ-- 128
Query: 122 PIDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ G R FK+++L+E D ++ AQ +LRRTMEK S + R L CN S++
Sbjct: 129 -LTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRII 187
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +++ + L IAKKE +++ L + S LR+AI
Sbjct: 188 EPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAI 242
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 37/242 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP++LD + L++ + + PH+LFYGPPG+GK + ++AL +Q++GP
Sbjct: 37 WVEKYRPRSLDDIAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPE 96
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K+ A+
Sbjct: 97 LVKSRV--------------------------LELNASDE--RGISIVREKVKDFARMQL 128
Query: 120 -NRPIDTKGKRGF-----KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173
N P + ++ + K+++L+E D ++++AQ +LRRTME YS R L CN +++
Sbjct: 129 SNPPHAEEYRKKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRI 188
Query: 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
+ + SRC R S E K +E IA+ E ++L G L S LR+AI +
Sbjct: 189 IDPLASRCSKFRFKSLDEGNAGKRIEDIARLENVKLDEGVVETLLRCSEGDLRKAITFLQ 248
Query: 234 TC 235
+
Sbjct: 249 SA 250
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 123/235 (52%), Gaps = 40/235 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+++V +EL+ SD G Q VV+E +K A+
Sbjct: 100 LFRLRV--------------------------LELNASDERGIQ---VVREKVKNFAQ-- 128
Query: 122 PIDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ G R FK+++L+E D ++ AQ +LRRTMEK S + R L CN S++
Sbjct: 129 -LTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRII 187
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +++ + L IAKKE +++ L + S LR+AI
Sbjct: 188 EPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAI 242
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 35/229 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD +I H+DI + + + E PHLLFYGPPG+GK + I+A +Q++ P
Sbjct: 12 WVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTILACAQQIYSPK 71
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
KV +EL+ SD DR +V+ I A
Sbjct: 72 EFTSKV--------------------------LELNASD----DRGIGIVRGEILSFAST 101
Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
+ I GFK++VL+E D ++ +AQ++LRR +EK++ + R L CN SK+ A++SR
Sbjct: 102 KTI---FNTGFKLIVLDEADAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSR 158
Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
C R + Q+ ++ + +E L + + L + + +R+A+
Sbjct: 159 CTRFRFGPLSTAQMSPRIDHVITQERLTVTADGKKALMDLAQGDMRKAL 207
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 123/235 (52%), Gaps = 40/235 (17%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK +D+V +++ LKK + D P+LLFYGPPG+GK + I+A R++FGP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNR 121
+++V +EL+ SD G Q VV+E +K A+
Sbjct: 100 LFRLRV--------------------------LELNASDERGIQ---VVREKVKNFAQ-- 128
Query: 122 PIDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ G R FK+++L+E D ++ AQ +LRRTMEK S + R L CN S++
Sbjct: 129 -LTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRII 187
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R +++ + L IAKKE +++ L + S LR+AI
Sbjct: 188 EPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAI 242
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 35/239 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK L+ V LKK + + PH+LFYGPPG+GK + I+AL ++++GP
Sbjct: 26 WVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELYGPA 85
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V++ IK A+
Sbjct: 86 LMKSRV--------------------------LELNASDE--RGIAIVRDKIKSFARLTV 117
Query: 120 NRPIDTKGKR----GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 118 SKPSQNDREKYPCPPYKIIILDEADSMTADAQSALRRTMENYSNVTRFCLICNYVTRIID 177
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
+ SRC R + ++++AK+E LQ ++ + S LRRAI+ ++
Sbjct: 178 PLASRCSKFRFKPLDSSNALSRVQYVAKEERLQYDEHVLEKILDVSQGDLRRAIMLLQS 236
>gi|346973023|gb|EGY16475.1| replication factor C subunit 3 [Verticillium dahliae VdLs.17]
Length = 393
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 41/256 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP TL V H DI + K V + PHLL YGPPG+GK + I+AL R+++GP
Sbjct: 44 WVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARRIYGP- 102
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
EN R + LEL + D G VV+E IK A +
Sbjct: 103 ------EN--------VRQMVLELN----------ASDDRGID---VVREQIKTFASTKQ 135
Query: 123 IDT-----------KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
I T G G+K++VL+E D ++ AQ +LRR MEKY+A+ R + N +
Sbjct: 136 IFTSARSGGGGGSSSGAAGYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAH 195
Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVL-EFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL 230
K++ A+ SRC R SP E ++VL + + EG+++ L + +RRA+
Sbjct: 196 KLSPALLSRCTRFRF-SPLREADIRVLVDRVVDDEGVRIRPDATDALVRLAKGDMRRALN 254
Query: 231 SFETCRVQQLRFTMPS 246
+ C P
Sbjct: 255 VLQACHASSTPLRAPG 270
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 31/203 (15%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK LD +I H DI +++ + E+ PHLLFYGPPG+GK + I+A+ +Q++ P
Sbjct: 13 WVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLY-PD 71
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
+ GS ++L + D G +V+ I A R
Sbjct: 72 KQ------------FGSMVLELN------------ASDDRGIG---IVRGDILSFASTRT 104
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
I K GFK+++L+E D ++++AQ++LRR MEK++ + R L CN +K+ A++SRC
Sbjct: 105 I---FKSGFKLVILDEADAMTQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCT 161
Query: 183 NIRINSPTEEQIVKVLEFIAKKE 205
R + +Q++ LE + + E
Sbjct: 162 RFRFGPLSVDQMLPRLEHVIESE 184
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 28/248 (11%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+++D V+ ++ L+K V D P++L YGPPG+GK + I+A RQ+FG
Sbjct: 35 WVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD- 93
Query: 63 AEKVKVENKTWKIDAGS-RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
+ +++A R I++ T + N +L+ S R
Sbjct: 94 ----MYRERILELNASDERGINVVRTKIK--NFAQLTASSV------------------R 129
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
P D + FK++VL+E D ++ AQ +LRRTMEK S S R L CN S++ I SRC
Sbjct: 130 P-DGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 188
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC-RVQQL 240
R + E QI+ L+ I E + + + + S +RRAI + ++C R++
Sbjct: 189 SKFRFKALGETQIITRLQHICDLESVSIEPDAYQSIVKISGGDMRRAITTLQSCYRLKGA 248
Query: 241 RFTMPSVD 248
T+ S D
Sbjct: 249 EHTINSDD 256
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 35/234 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP+ LD V LK+ + + PH+LFYGPPG+GK + I+AL +++FGP
Sbjct: 26 WVEKYRPRNLDDVAAQDHAVAVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGPQ 85
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
K +V +EL+ SD + +V+E +K A+
Sbjct: 86 LVKSRV--------------------------LELNASDE--RGISIVREKVKNFARLTV 117
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
++P ++ +K+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 118 SKPSKDDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIID 177
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
+ SRC R + E + L+++A +E + G ++ + S LRRAI
Sbjct: 178 PLASRCSKFRFKALDETNALDRLKYVATQESTKYEEGTLEKILQISAGDLRRAI 231
>gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator]
Length = 360
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 33/236 (13%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK++D ++ ++ +++ + D P++LFYGPPG+GK ++I A RQ+FG
Sbjct: 34 WVEKYRPKSVDDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-- 91
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR- 121
+ R+ LEL + D G Q VV++ IK A R
Sbjct: 92 --------------SIYRDRILELN----------ASDDRGIQ---VVRDKIKSFALRRA 124
Query: 122 -PIDTKGKR--GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
P GK+ FK+++L+E D ++ AQ +LRR MEK + S R L CN S++ + I
Sbjct: 125 NPTRPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSRIIKPIT 184
Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
SRC R ++E+ + LE+I +E L ++ S LR+A++ ++
Sbjct: 185 SRCTKFRFKPLSDEKSIARLEYICNEENLMANRNVLEKIVAASGGDLRQAVMCLQS 240
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 39/235 (16%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRPK + V ++ + L + +CPH+LFYGPPG+GK T +A+ Q++GP
Sbjct: 11 WVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPE 70
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--YVVQEVIKEMAKN 120
K +V +EL+ SD DR VV+ IK+ A
Sbjct: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAA- 99
Query: 121 RPIDTKGKRG------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
+ + ++G +K+++L+E D ++ +AQ++LRRTME YS R CN S++
Sbjct: 100 VAVGSGQRQGVYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 159
Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
E + SRC R EE + + I +EGL L + + L+ S LRRAI
Sbjct: 160 EPLASRCAKFRFKPLPEEIMSNRILHICNEEGLTLDTEALSTLSSVSQGDLRRAI 214
>gi|451999620|gb|EMD92082.1| hypothetical protein COCHEDRAFT_1193657 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 35/250 (14%)
Query: 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
WV+KYRP +LD V H+DI + K V PHLL YGPPG+GK + ++AL R+++G
Sbjct: 44 WVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 101
Query: 63 AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
NK R + LEL + D G + VV+E IK + +
Sbjct: 102 -------NKNM------RQMVLELN----------ASDDRGIE---VVREQIKTFSSTKQ 135
Query: 123 IDTKGKRG-------FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
I + + FK++VL+E D ++ AQ +LRR MEKY+A+ R + N + K++
Sbjct: 136 IFSAAPKAGDSSLATFKLIVLDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSP 195
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
A+ SRC R + ++ I +++ + ++E + + L S +RRA+ + C
Sbjct: 196 ALLSRCTRFRFSPLKDQDIRHLVDKVIEEEKVNITQDATDSLVTLSKGDMRRALNVLQAC 255
Query: 236 RVQQLRFTMP 245
P
Sbjct: 256 HASSTPLQPP 265
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,560,893,779
Number of Sequences: 23463169
Number of extensions: 136101406
Number of successful extensions: 636267
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6783
Number of HSP's successfully gapped in prelim test: 3846
Number of HSP's that attempted gapping in prelim test: 622553
Number of HSP's gapped (non-prelim): 12589
length of query: 248
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 109
effective length of database: 9,097,814,876
effective search space: 991661821484
effective search space used: 991661821484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)