Query 025758
Match_columns 248
No_of_seqs 124 out of 1719
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0989 Replication factor C, 100.0 1.6E-42 3.6E-47 275.8 18.8 214 1-243 24-242 (346)
2 KOG2035 Replication factor C, 100.0 1.3E-40 2.9E-45 261.1 22.5 242 1-245 1-242 (351)
3 PRK14956 DNA polymerase III su 100.0 3.9E-40 8.5E-45 282.7 18.9 221 2-237 7-228 (484)
4 PRK07003 DNA polymerase III su 100.0 7.7E-40 1.7E-44 290.6 19.6 222 2-238 5-227 (830)
5 PRK14964 DNA polymerase III su 100.0 1.3E-39 2.9E-44 282.2 20.1 224 1-239 1-225 (491)
6 PRK12323 DNA polymerase III su 100.0 1.3E-39 2.9E-44 285.8 19.9 226 2-237 5-231 (700)
7 PLN03025 replication factor C 100.0 7.5E-39 1.6E-43 268.8 20.8 206 1-237 1-206 (319)
8 PRK14958 DNA polymerase III su 100.0 5.4E-39 1.2E-43 282.1 19.2 222 2-238 5-227 (509)
9 PRK14960 DNA polymerase III su 100.0 4.5E-38 9.7E-43 276.8 19.7 222 2-238 4-226 (702)
10 KOG0991 Replication factor C, 100.0 3.8E-38 8.2E-43 242.0 15.9 213 1-244 15-227 (333)
11 PRK14951 DNA polymerase III su 100.0 5.2E-38 1.1E-42 279.0 19.1 228 2-239 5-233 (618)
12 PRK07994 DNA polymerase III su 100.0 9.1E-38 2E-42 278.0 20.5 222 2-238 5-227 (647)
13 COG2812 DnaX DNA polymerase II 100.0 7.9E-39 1.7E-43 276.6 12.9 223 3-240 6-229 (515)
14 PRK14952 DNA polymerase III su 100.0 2E-37 4.2E-42 274.5 21.7 223 1-238 1-226 (584)
15 PRK14949 DNA polymerase III su 100.0 2.1E-37 4.6E-42 279.7 20.4 221 2-237 5-226 (944)
16 PRK08451 DNA polymerase III su 100.0 1.6E-36 3.5E-41 265.2 22.7 223 1-238 2-225 (535)
17 PRK08691 DNA polymerase III su 100.0 3.8E-37 8.2E-42 273.1 19.0 222 2-238 5-227 (709)
18 PRK05896 DNA polymerase III su 100.0 7.5E-37 1.6E-41 268.8 20.4 223 2-239 5-228 (605)
19 PRK14961 DNA polymerase III su 100.0 1E-36 2.2E-41 259.7 19.9 222 2-238 5-227 (363)
20 PRK07764 DNA polymerase III su 100.0 7.1E-37 1.5E-41 280.1 20.1 222 1-237 3-227 (824)
21 PRK14957 DNA polymerase III su 100.0 1.2E-36 2.5E-41 267.4 20.4 222 2-238 5-227 (546)
22 PRK06645 DNA polymerase III su 100.0 1.7E-36 3.7E-41 264.8 20.8 227 1-238 9-236 (507)
23 PRK14965 DNA polymerase III su 100.0 1.3E-36 2.9E-41 271.5 19.1 222 2-238 5-227 (576)
24 PRK14969 DNA polymerase III su 100.0 1.7E-36 3.8E-41 267.9 19.6 222 2-238 5-227 (527)
25 PRK09111 DNA polymerase III su 100.0 3.7E-36 8.1E-41 267.6 19.9 227 2-238 13-240 (598)
26 PRK14959 DNA polymerase III su 100.0 4E-36 8.6E-41 265.4 18.6 221 2-237 5-226 (624)
27 PRK07133 DNA polymerase III su 100.0 1.6E-35 3.4E-40 265.1 20.7 218 1-237 6-225 (725)
28 PRK05563 DNA polymerase III su 100.0 3.4E-35 7.3E-40 261.4 21.7 221 2-237 5-226 (559)
29 PRK14963 DNA polymerase III su 100.0 6.2E-35 1.3E-39 256.0 20.9 226 3-244 4-230 (504)
30 PRK14962 DNA polymerase III su 100.0 5.6E-35 1.2E-39 254.4 20.4 222 2-238 3-225 (472)
31 PRK14953 DNA polymerase III su 100.0 9.4E-35 2E-39 254.1 19.9 223 2-239 5-228 (486)
32 PRK14948 DNA polymerase III su 100.0 1.4E-34 3E-39 259.2 20.4 224 2-238 5-229 (620)
33 PRK14955 DNA polymerase III su 100.0 2E-34 4.2E-39 248.2 20.4 229 2-237 5-234 (397)
34 PRK14971 DNA polymerase III su 100.0 3E-34 6.6E-39 257.0 22.1 222 2-237 6-228 (614)
35 PRK14954 DNA polymerase III su 100.0 3.4E-34 7.3E-39 255.5 21.2 229 3-238 6-235 (620)
36 PRK06305 DNA polymerase III su 100.0 6.2E-34 1.3E-38 247.5 19.8 221 2-237 6-228 (451)
37 PRK06647 DNA polymerase III su 100.0 8.4E-34 1.8E-38 251.6 19.9 221 2-237 5-226 (563)
38 PRK12402 replication factor C 100.0 1.8E-33 3.9E-38 238.5 20.4 233 1-244 3-239 (337)
39 TIGR02397 dnaX_nterm DNA polym 100.0 4.1E-33 9E-38 237.9 21.0 223 2-239 3-226 (355)
40 PRK14950 DNA polymerase III su 100.0 8.1E-33 1.8E-37 248.2 21.4 220 3-237 6-227 (585)
41 PRK00440 rfc replication facto 100.0 1.8E-32 3.8E-37 230.7 21.8 212 2-245 6-217 (319)
42 PRK14970 DNA polymerase III su 100.0 7.4E-32 1.6E-36 230.9 20.7 210 1-237 5-215 (367)
43 PRK04195 replication factor C 100.0 4.5E-32 9.8E-37 239.1 19.4 203 1-242 2-213 (482)
44 COG2256 MGS1 ATPase related to 100.0 1.5E-31 3.2E-36 220.6 19.0 197 1-241 12-222 (436)
45 PHA02544 44 clamp loader, smal 100.0 2E-30 4.3E-35 218.0 21.9 198 1-237 9-215 (316)
46 PRK09112 DNA polymerase III su 100.0 3.5E-30 7.6E-35 217.0 21.4 221 6-235 16-244 (351)
47 PRK07471 DNA polymerase III su 100.0 3.7E-29 7.9E-34 211.9 20.8 219 7-234 13-241 (365)
48 KOG0990 Replication factor C, 100.0 3.9E-30 8.5E-35 206.2 13.2 212 1-240 29-241 (360)
49 PRK07940 DNA polymerase III su 100.0 4.6E-29 9.9E-34 212.9 19.5 202 11-232 3-214 (394)
50 PF05496 RuvB_N: Holliday junc 100.0 9.7E-30 2.1E-34 197.2 13.0 190 2-236 13-226 (233)
51 PRK07399 DNA polymerase III su 100.0 2.1E-28 4.6E-33 203.6 20.5 203 11-236 2-226 (314)
52 PRK13342 recombination factor 100.0 8.8E-29 1.9E-33 214.4 18.6 195 2-238 1-203 (413)
53 PRK07993 DNA polymerase III su 100.0 2.1E-28 4.5E-33 205.2 19.3 200 16-233 5-206 (334)
54 PRK06871 DNA polymerase III su 100.0 1.3E-27 2.9E-32 198.4 20.4 200 16-233 5-205 (325)
55 PRK13341 recombination factor 100.0 6.7E-28 1.5E-32 218.9 19.2 197 1-238 16-224 (725)
56 PRK05564 DNA polymerase III su 100.0 2.6E-27 5.5E-32 198.6 20.1 190 10-232 1-191 (313)
57 PRK08769 DNA polymerase III su 100.0 3.5E-27 7.5E-32 195.7 19.5 195 17-233 8-210 (319)
58 PRK05707 DNA polymerase III su 100.0 3E-27 6.5E-32 197.7 19.2 194 23-233 10-205 (328)
59 KOG1969 DNA replication checkp 100.0 2.9E-27 6.3E-32 206.9 19.6 207 2-243 260-522 (877)
60 PRK08058 DNA polymerase III su 100.0 5.8E-27 1.2E-31 197.1 18.9 203 10-233 2-206 (329)
61 PRK06090 DNA polymerase III su 100.0 7.7E-27 1.7E-31 193.4 19.3 196 16-233 6-203 (319)
62 PRK00080 ruvB Holliday junctio 99.9 8.3E-26 1.8E-30 190.6 18.6 190 2-236 14-227 (328)
63 PF13177 DNA_pol3_delta2: DNA 99.9 3.8E-26 8.3E-31 173.2 14.5 160 17-190 1-162 (162)
64 KOG2028 ATPase related to the 99.9 2.5E-26 5.5E-31 187.4 13.8 197 2-236 127-341 (554)
65 COG2255 RuvB Holliday junction 99.9 4E-25 8.6E-30 175.0 17.2 187 5-236 18-228 (332)
66 COG0470 HolB ATPase involved i 99.9 1.2E-25 2.5E-30 189.7 15.0 204 13-238 1-206 (325)
67 TIGR00678 holB DNA polymerase 99.9 4.3E-25 9.2E-30 172.2 16.9 186 23-228 2-188 (188)
68 TIGR02902 spore_lonB ATP-depen 99.9 4.2E-25 9.2E-30 196.1 18.7 226 2-239 54-312 (531)
69 PRK06964 DNA polymerase III su 99.9 9E-25 1.9E-29 182.8 19.1 193 17-232 5-226 (342)
70 PRK04132 replication factor C 99.9 3.8E-25 8.2E-30 202.0 17.2 176 37-244 567-744 (846)
71 TIGR00635 ruvB Holliday juncti 99.9 3.6E-24 7.8E-29 179.2 17.7 183 10-237 1-207 (305)
72 TIGR00602 rad24 checkpoint pro 99.9 2.5E-24 5.4E-29 192.2 16.8 226 2-239 73-331 (637)
73 PRK07276 DNA polymerase III su 99.9 1.4E-23 3.1E-28 171.4 18.3 192 17-232 6-198 (290)
74 PRK05917 DNA polymerase III su 99.9 3.4E-23 7.4E-28 168.6 18.1 171 19-225 3-175 (290)
75 PRK08084 DNA replication initi 99.9 1.4E-22 3.1E-27 163.0 18.8 183 10-236 19-214 (235)
76 TIGR02881 spore_V_K stage V sp 99.9 1.1E-22 2.5E-27 166.3 18.1 193 11-240 4-239 (261)
77 PRK05818 DNA polymerase III su 99.9 1E-22 2.2E-27 162.5 15.8 178 34-235 6-194 (261)
78 PRK06893 DNA replication initi 99.9 1E-21 2.3E-26 157.4 18.4 185 8-236 11-208 (229)
79 PF03215 Rad17: Rad17 cell cyc 99.9 8.4E-22 1.8E-26 173.2 19.3 220 2-238 8-270 (519)
80 PRK08699 DNA polymerase III su 99.9 4.4E-22 9.5E-27 166.4 16.8 171 16-200 4-183 (325)
81 KOG1970 Checkpoint RAD17-RFC c 99.9 2.4E-21 5.1E-26 165.6 18.2 221 2-240 71-324 (634)
82 PRK08727 hypothetical protein; 99.9 1E-20 2.2E-25 152.0 19.3 183 10-236 16-209 (233)
83 PRK08903 DnaA regulatory inact 99.9 1.9E-20 4.2E-25 150.2 19.5 182 8-237 13-205 (227)
84 CHL00181 cbbX CbbX; Provisiona 99.9 6E-21 1.3E-25 157.3 16.4 190 14-240 24-255 (287)
85 PRK07132 DNA polymerase III su 99.9 2.8E-20 6E-25 153.4 20.0 182 20-233 3-186 (299)
86 TIGR02903 spore_lon_C ATP-depe 99.9 1.7E-20 3.7E-25 169.2 19.8 216 3-236 144-399 (615)
87 PRK06620 hypothetical protein; 99.9 4.6E-20 9.9E-25 146.0 19.3 173 3-237 9-195 (214)
88 TIGR03420 DnaA_homol_Hda DnaA 99.8 1E-19 2.3E-24 145.8 18.1 186 8-237 10-207 (226)
89 TIGR02880 cbbX_cfxQ probable R 99.8 5.7E-20 1.2E-24 151.6 16.3 194 14-240 23-254 (284)
90 COG1223 Predicted ATPase (AAA+ 99.8 3.1E-20 6.8E-25 145.6 13.3 184 7-228 115-323 (368)
91 PRK05642 DNA replication initi 99.8 2E-19 4.3E-24 144.6 18.1 184 10-237 16-214 (234)
92 PF00308 Bac_DnaA: Bacterial d 99.8 1.8E-19 3.9E-24 143.2 15.0 196 10-240 5-217 (219)
93 PRK09087 hypothetical protein; 99.8 4.6E-19 9.9E-24 141.4 17.0 172 10-236 18-200 (226)
94 PTZ00112 origin recognition co 99.8 4.4E-19 9.6E-24 160.0 16.9 216 5-238 750-988 (1164)
95 TIGR02928 orc1/cdc6 family rep 99.8 1.1E-18 2.4E-23 149.5 18.2 225 3-240 8-255 (365)
96 COG1222 RPT1 ATP-dependent 26S 99.8 1.1E-18 2.5E-23 142.6 16.2 195 4-237 142-370 (406)
97 PRK12422 chromosomal replicati 99.8 1.1E-18 2.4E-23 151.7 17.2 191 10-236 108-318 (445)
98 COG0466 Lon ATP-dependent Lon 99.8 4.4E-19 9.6E-24 156.2 13.7 195 14-237 324-555 (782)
99 PTZ00361 26 proteosome regulat 99.8 1.8E-18 3.8E-23 149.4 15.2 202 1-240 171-405 (438)
100 TIGR03345 VI_ClpV1 type VI sec 99.8 4.4E-18 9.5E-23 158.4 18.6 200 13-236 566-827 (852)
101 PRK00411 cdc6 cell division co 99.8 1.7E-17 3.7E-22 143.7 20.2 215 6-239 26-262 (394)
102 PRK14088 dnaA chromosomal repl 99.8 7E-18 1.5E-22 147.0 17.5 188 10-237 102-311 (440)
103 TIGR01241 FtsH_fam ATP-depende 99.8 3.2E-18 6.9E-23 151.9 15.7 196 4-237 46-273 (495)
104 PRK00149 dnaA chromosomal repl 99.8 3.8E-18 8.2E-23 149.8 15.9 190 10-237 119-328 (450)
105 COG1224 TIP49 DNA helicase TIP 99.8 1.1E-17 2.5E-22 136.6 17.4 115 130-245 291-418 (450)
106 PF06068 TIP49: TIP49 C-termin 99.8 7.6E-18 1.7E-22 139.4 16.2 106 130-236 278-396 (398)
107 PRK14087 dnaA chromosomal repl 99.8 1.8E-17 3.9E-22 144.6 19.1 195 9-237 111-325 (450)
108 PRK06581 DNA polymerase III su 99.8 2.5E-17 5.5E-22 128.9 17.8 176 23-229 3-185 (263)
109 COG0542 clpA ATP-binding subun 99.8 5.1E-18 1.1E-22 153.0 15.5 200 13-236 491-751 (786)
110 KOG2004 Mitochondrial ATP-depe 99.8 4.5E-18 9.8E-23 149.4 14.5 196 13-237 411-643 (906)
111 TIGR00362 DnaA chromosomal rep 99.8 5.6E-18 1.2E-22 147.0 14.9 193 10-237 107-316 (405)
112 TIGR00763 lon ATP-dependent pr 99.8 3.1E-18 6.7E-23 158.9 13.5 194 14-236 321-551 (775)
113 TIGR02639 ClpA ATP-dependent C 99.8 8.7E-18 1.9E-22 155.2 16.2 203 2-237 171-403 (731)
114 TIGR03345 VI_ClpV1 type VI sec 99.8 1.3E-17 2.8E-22 155.3 17.4 203 3-237 177-408 (852)
115 KOG0734 AAA+-type ATPase conta 99.8 9.2E-18 2E-22 143.3 14.8 193 9-240 300-522 (752)
116 PTZ00454 26S protease regulato 99.8 3.4E-17 7.3E-22 140.5 17.3 197 5-239 137-366 (398)
117 COG1474 CDC6 Cdc6-related prot 99.8 3.2E-17 7E-22 139.0 17.0 222 5-246 12-252 (366)
118 PRK14086 dnaA chromosomal repl 99.8 2.7E-17 5.8E-22 145.8 16.9 192 10-237 285-494 (617)
119 CHL00095 clpC Clp protease ATP 99.8 4.3E-17 9.4E-22 152.2 18.7 185 13-221 509-760 (821)
120 CHL00176 ftsH cell division pr 99.8 5.8E-17 1.3E-21 146.1 17.8 192 9-238 179-402 (638)
121 PRK03992 proteasome-activating 99.7 6.6E-17 1.4E-21 139.1 17.0 193 8-238 126-351 (389)
122 CHL00195 ycf46 Ycf46; Provisio 99.7 7.1E-17 1.5E-21 141.4 16.2 192 9-237 224-442 (489)
123 PRK10865 protein disaggregatio 99.7 1.9E-16 4E-21 148.0 19.0 201 12-236 567-825 (857)
124 COG0593 DnaA ATPase involved i 99.7 1.1E-16 2.5E-21 135.6 15.8 196 10-240 84-295 (408)
125 TIGR03346 chaperone_ClpB ATP-d 99.7 1.9E-16 4.2E-21 148.3 18.9 200 13-236 565-822 (852)
126 PRK11034 clpA ATP-dependent Cl 99.7 1.4E-16 3E-21 146.1 17.1 181 14-221 459-694 (758)
127 TIGR02639 ClpA ATP-dependent C 99.7 1.8E-16 4E-21 146.4 17.8 197 13-236 454-708 (731)
128 COG4555 NatA ABC-type Na+ tran 99.7 1.5E-17 3.3E-22 126.1 8.5 155 20-188 16-210 (245)
129 TIGR01242 26Sp45 26S proteasom 99.7 2.9E-16 6.3E-21 134.4 16.0 195 6-238 115-342 (364)
130 KOG0730 AAA+-type ATPase [Post 99.7 1.4E-16 3E-21 139.4 13.8 191 7-240 428-653 (693)
131 TIGR03689 pup_AAA proteasome A 99.7 4E-16 8.8E-21 136.7 16.5 184 3-210 172-385 (512)
132 KOG1968 Replication factor C, 99.7 9.1E-17 2E-21 147.7 13.0 202 1-238 308-538 (871)
133 KOG1942 DNA helicase, TBP-inte 99.7 7.2E-16 1.6E-20 123.3 16.3 107 130-237 296-416 (456)
134 PRK10787 DNA-binding ATP-depen 99.7 1.9E-16 4.2E-21 146.1 14.6 193 14-236 323-552 (784)
135 TIGR01243 CDC48 AAA family ATP 99.7 4E-16 8.7E-21 144.5 15.7 190 9-236 449-669 (733)
136 KOG0731 AAA+-type ATPase conta 99.7 1.8E-15 3.9E-20 135.8 17.3 203 8-247 306-541 (774)
137 COG4152 ABC-type uncharacteriz 99.7 2.5E-17 5.4E-22 128.4 4.7 151 16-183 12-202 (300)
138 TIGR03346 chaperone_ClpB ATP-d 99.7 1.2E-15 2.5E-20 143.1 15.9 205 2-238 162-395 (852)
139 PF05673 DUF815: Protein of un 99.7 1.1E-14 2.4E-19 114.9 18.5 192 4-237 18-247 (249)
140 PRK13407 bchI magnesium chelat 99.7 5.7E-15 1.2E-19 123.7 17.5 227 7-238 2-285 (334)
141 COG1131 CcmA ABC-type multidru 99.7 1E-16 2.2E-21 132.9 5.8 158 11-182 9-208 (293)
142 KOG0727 26S proteasome regulat 99.7 4.3E-15 9.4E-20 116.6 14.0 162 10-208 152-345 (408)
143 KOG2680 DNA helicase TIP49, TB 99.6 1.3E-14 2.7E-19 116.5 16.5 119 128-247 286-417 (454)
144 KOG0738 AAA+-type ATPase [Post 99.6 8.3E-15 1.8E-19 121.2 14.9 174 9-223 208-415 (491)
145 TIGR02030 BchI-ChlI magnesium 99.6 2.5E-14 5.5E-19 120.0 17.8 227 12-239 3-289 (337)
146 CHL00081 chlI Mg-protoporyphyr 99.6 2.1E-14 4.6E-19 120.5 17.0 229 5-238 8-301 (350)
147 TIGR03015 pepcterm_ATPase puta 99.6 9.8E-14 2.1E-18 114.1 20.7 204 18-240 28-247 (269)
148 PRK10865 protein disaggregatio 99.6 4.4E-15 9.5E-20 138.9 13.7 203 3-237 168-399 (857)
149 KOG0733 Nuclear AAA ATPase (VC 99.6 2.7E-14 5.9E-19 124.0 16.8 172 11-224 188-395 (802)
150 PRK11034 clpA ATP-dependent Cl 99.6 1.1E-14 2.4E-19 133.7 15.3 198 8-238 181-408 (758)
151 PLN00020 ribulose bisphosphate 99.6 1.2E-14 2.6E-19 120.9 13.3 156 33-223 146-330 (413)
152 CHL00095 clpC Clp protease ATP 99.6 1.1E-14 2.4E-19 136.2 14.0 201 5-238 171-400 (821)
153 TIGR02640 gas_vesic_GvpN gas v 99.6 1.8E-13 4E-18 111.9 19.1 104 131-239 106-240 (262)
154 PRK08485 DNA polymerase III su 99.6 1.6E-14 3.5E-19 110.2 11.5 102 134-236 58-172 (206)
155 COG1126 GlnQ ABC-type polar am 99.6 1.3E-15 2.9E-20 117.0 5.4 167 11-181 7-206 (240)
156 COG0465 HflB ATP-dependent Zn 99.6 1.6E-14 3.5E-19 127.4 12.8 201 9-247 146-378 (596)
157 PRK13537 nodulation ABC transp 99.6 1.3E-15 2.8E-20 127.3 5.4 151 17-182 18-209 (306)
158 PF00004 AAA: ATPase family as 99.6 2.9E-14 6.3E-19 104.3 11.6 115 37-187 1-131 (132)
159 KOG0733 Nuclear AAA ATPase (VC 99.6 5.2E-14 1.1E-18 122.3 14.8 176 9-221 507-712 (802)
160 COG1125 OpuBA ABC-type proline 99.6 1.2E-15 2.7E-20 119.8 4.3 165 12-190 7-221 (309)
161 COG1120 FepC ABC-type cobalami 99.6 1.3E-15 2.8E-20 121.9 4.5 180 17-201 13-235 (258)
162 PRK10733 hflB ATP-dependent me 99.6 3.7E-14 8.1E-19 129.1 14.3 195 5-237 144-370 (644)
163 PRK05342 clpX ATP-dependent pr 99.6 1.2E-13 2.6E-18 119.0 16.2 191 15-236 73-375 (412)
164 COG3842 PotA ABC-type spermidi 99.6 1.2E-15 2.6E-20 127.3 3.7 168 13-184 12-210 (352)
165 KOG0739 AAA+-type ATPase [Post 99.6 4.6E-14 9.9E-19 113.3 12.3 174 10-223 130-333 (439)
166 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 8.6E-15 1.9E-19 116.7 7.7 158 20-181 18-209 (254)
167 COG1116 TauB ABC-type nitrate/ 99.6 5.1E-15 1.1E-19 116.6 6.1 162 16-181 13-201 (248)
168 COG1124 DppF ABC-type dipeptid 99.6 1.5E-14 3.2E-19 113.2 8.5 155 21-186 22-217 (252)
169 TIGR01817 nifA Nif-specific re 99.6 4.9E-13 1.1E-17 120.0 19.5 201 5-239 188-428 (534)
170 TIGR01243 CDC48 AAA family ATP 99.6 1.1E-13 2.4E-18 128.4 15.6 177 8-223 173-379 (733)
171 PRK13536 nodulation factor exp 99.5 3.6E-15 7.7E-20 126.1 4.9 150 20-183 55-244 (340)
172 KOG0737 AAA+-type ATPase [Post 99.5 1.4E-13 3.1E-18 113.4 13.7 184 10-231 89-303 (386)
173 TIGR00382 clpX endopeptidase C 99.5 2.5E-13 5.5E-18 116.5 15.7 190 16-236 80-381 (413)
174 CHL00206 ycf2 Ycf2; Provisiona 99.5 1.3E-13 2.9E-18 132.9 15.3 119 129-247 1731-1865(2281)
175 COG0464 SpoVK ATPases of the A 99.5 3.4E-13 7.4E-18 120.1 16.8 195 8-239 237-462 (494)
176 KOG0728 26S proteasome regulat 99.5 3.1E-13 6.7E-18 106.2 14.4 165 3-204 137-333 (404)
177 KOG0736 Peroxisome assembly fa 99.5 1.3E-13 2.8E-18 122.7 13.1 179 6-224 665-878 (953)
178 COG3839 MalK ABC-type sugar tr 99.5 5.3E-15 1.1E-19 122.9 4.0 159 21-183 18-206 (338)
179 KOG0740 AAA+-type ATPase [Post 99.5 2.8E-13 6E-18 115.2 14.1 179 5-223 145-354 (428)
180 COG2884 FtsE Predicted ATPase 99.5 3.2E-14 6.9E-19 107.2 7.2 168 19-189 15-215 (223)
181 TIGR01188 drrA daunorubicin re 99.5 1E-14 2.2E-19 121.8 5.1 147 21-182 8-195 (302)
182 cd00009 AAA The AAA+ (ATPases 99.5 3.3E-13 7.1E-18 100.1 12.7 137 16-187 1-150 (151)
183 KOG0652 26S proteasome regulat 99.5 8.7E-13 1.9E-17 104.3 14.4 174 10-222 168-374 (424)
184 COG2607 Predicted ATPase (AAA+ 99.5 4.8E-12 1E-16 98.8 18.1 194 4-239 51-281 (287)
185 COG1118 CysA ABC-type sulfate/ 99.5 2.3E-14 4.9E-19 115.6 5.4 165 17-185 13-212 (345)
186 cd03213 ABCG_EPDR ABCG transpo 99.5 2.1E-13 4.6E-18 106.7 10.4 147 20-184 23-185 (194)
187 PRK11650 ugpC glycerol-3-phosp 99.5 1.2E-13 2.6E-18 117.5 8.0 157 21-182 19-206 (356)
188 TIGR02442 Cob-chelat-sub cobal 99.5 2.9E-12 6.2E-17 116.8 17.5 222 12-237 3-282 (633)
189 TIGR02974 phageshock_pspF psp 99.5 4.8E-12 1E-16 106.6 17.4 193 15-239 1-233 (329)
190 cd03230 ABC_DR_subfamily_A Thi 99.5 2.5E-13 5.3E-18 104.4 8.9 142 22-184 16-168 (173)
191 TIGR01288 nodI ATP-binding ABC 99.5 4.8E-14 1E-18 117.8 5.3 149 19-182 17-206 (303)
192 TIGR03522 GldA_ABC_ATP gliding 99.5 2.5E-13 5.4E-18 113.4 9.4 148 21-183 17-204 (301)
193 cd03233 ABC_PDR_domain1 The pl 99.5 3.5E-13 7.6E-18 106.1 9.6 150 21-184 22-193 (202)
194 KOG0729 26S proteasome regulat 99.5 4.3E-13 9.4E-18 106.3 9.9 183 1-222 165-380 (435)
195 COG0410 LivF ABC-type branched 99.5 9.7E-14 2.1E-18 107.9 6.0 157 15-183 12-209 (237)
196 cd03215 ABC_Carb_Monos_II This 99.5 3.3E-13 7.2E-18 104.6 9.0 144 23-184 17-177 (182)
197 cd03229 ABC_Class3 This class 99.5 1.5E-13 3.2E-18 106.2 6.8 142 22-184 16-174 (178)
198 PRK13531 regulatory ATPase Rav 99.5 5.9E-12 1.3E-16 109.1 17.2 193 14-239 21-264 (498)
199 cd03259 ABC_Carb_Solutes_like 99.5 9.9E-14 2.1E-18 110.2 5.9 159 21-184 15-204 (213)
200 cd03228 ABCC_MRP_Like The MRP 99.5 3.6E-13 7.8E-18 103.3 8.8 142 21-184 17-167 (171)
201 cd03247 ABCC_cytochrome_bd The 99.5 2.8E-13 6.1E-18 104.6 8.2 139 22-184 18-169 (178)
202 cd03269 ABC_putative_ATPase Th 99.5 4.1E-13 8.9E-18 106.4 9.3 146 36-184 28-201 (210)
203 COG1127 Ttg2A ABC-type transpo 99.5 3.7E-14 8E-19 110.7 3.1 163 16-182 18-217 (263)
204 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 2.9E-13 6.3E-18 107.9 8.4 159 21-184 19-213 (218)
205 PF01637 Arch_ATPase: Archaeal 99.5 1.3E-12 2.8E-17 104.7 12.3 204 15-230 1-233 (234)
206 PF01078 Mg_chelatase: Magnesi 99.4 4.3E-13 9.3E-18 103.9 9.0 133 11-157 1-133 (206)
207 PRK11432 fbpC ferric transport 99.4 1.9E-13 4.1E-18 116.0 7.6 158 21-182 21-208 (351)
208 KOG0726 26S proteasome regulat 99.4 5.6E-13 1.2E-17 106.8 9.7 160 3-199 175-366 (440)
209 cd03222 ABC_RNaseL_inhibitor T 99.4 1.1E-12 2.4E-17 100.7 10.9 116 36-184 27-145 (177)
210 cd03218 ABC_YhbG The ABC trans 99.4 1.4E-13 3E-18 110.8 6.1 160 21-184 15-206 (232)
211 cd03216 ABC_Carb_Monos_I This 99.4 6.8E-13 1.5E-17 100.9 9.4 137 23-184 17-155 (163)
212 TIGR03265 PhnT2 putative 2-ami 99.4 2.9E-13 6.2E-18 115.1 8.1 156 23-182 21-206 (353)
213 COG1122 CbiO ABC-type cobalt t 99.4 4.1E-13 8.8E-18 107.2 8.3 162 21-186 19-214 (235)
214 PRK09452 potA putrescine/sperm 99.4 2.6E-13 5.7E-18 116.0 7.6 158 21-182 29-216 (375)
215 cd03268 ABC_BcrA_bacitracin_re 99.4 7E-13 1.5E-17 104.9 9.5 148 21-184 15-199 (208)
216 cd03246 ABCC_Protease_Secretio 99.4 5.6E-13 1.2E-17 102.4 8.6 139 22-184 18-168 (173)
217 cd03263 ABC_subfamily_A The AB 99.4 1.9E-13 4.1E-18 109.1 6.2 160 21-184 17-205 (220)
218 cd03266 ABC_NatA_sodium_export 99.4 5.8E-13 1.3E-17 106.2 8.7 149 21-184 20-209 (218)
219 cd03232 ABC_PDR_domain2 The pl 99.4 7.9E-13 1.7E-17 103.3 9.2 146 21-184 22-182 (192)
220 cd03264 ABC_drug_resistance_li 99.4 8.9E-13 1.9E-17 104.6 9.5 159 21-184 15-202 (211)
221 cd03265 ABC_DrrA DrrA is the A 99.4 2E-13 4.4E-18 109.0 5.3 160 21-184 15-205 (220)
222 cd03298 ABC_ThiQ_thiamine_tran 99.4 8.8E-13 1.9E-17 104.6 9.0 156 25-184 17-202 (211)
223 cd03225 ABC_cobalt_CbiO_domain 99.4 1.3E-13 2.9E-18 109.3 4.2 160 21-184 16-207 (211)
224 TIGR00960 3a0501s02 Type II (G 99.4 7.7E-13 1.7E-17 105.3 8.5 160 21-184 18-211 (216)
225 cd03301 ABC_MalK_N The N-termi 99.4 8.8E-13 1.9E-17 104.7 8.7 159 21-184 15-204 (213)
226 cd03293 ABC_NrtD_SsuB_transpor 99.4 9.3E-13 2E-17 105.1 8.8 158 21-184 19-205 (220)
227 PRK11608 pspF phage shock prot 99.4 3.1E-11 6.7E-16 101.8 18.4 197 11-239 4-240 (326)
228 PRK09536 btuD corrinoid ABC tr 99.4 1.2E-13 2.6E-18 118.8 3.9 160 19-182 16-210 (402)
229 KOG0742 AAA+-type ATPase [Post 99.4 5.6E-12 1.2E-16 105.4 13.5 156 12-204 354-530 (630)
230 TIGR02673 FtsE cell division A 99.4 1E-12 2.2E-17 104.4 8.9 160 21-184 17-210 (214)
231 cd03258 ABC_MetN_methionine_tr 99.4 1.1E-12 2.4E-17 105.6 8.9 160 21-184 20-214 (233)
232 TIGR02329 propionate_PrpR prop 99.4 3.1E-11 6.8E-16 107.2 18.7 198 10-238 209-449 (526)
233 TIGR01277 thiQ thiamine ABC tr 99.4 1.7E-12 3.8E-17 103.1 9.7 147 36-184 26-202 (213)
234 cd03262 ABC_HisP_GlnQ_permease 99.4 1E-12 2.2E-17 104.3 8.4 160 21-184 15-208 (213)
235 cd03296 ABC_CysA_sulfate_impor 99.4 1.2E-12 2.5E-17 105.9 8.8 160 21-184 17-210 (239)
236 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 1.8E-12 4E-17 104.6 9.8 159 21-184 16-205 (236)
237 COG3840 ThiQ ABC-type thiamine 99.4 3E-12 6.5E-17 96.0 10.0 146 37-185 28-204 (231)
238 PRK15424 propionate catabolism 99.4 4.7E-11 1E-15 106.1 19.3 203 11-238 217-464 (538)
239 TIGR03410 urea_trans_UrtE urea 99.4 4.2E-13 9.2E-18 107.8 5.8 160 21-184 15-205 (230)
240 PRK10771 thiQ thiamine transpo 99.4 1.8E-12 4E-17 104.3 9.5 147 36-184 27-203 (232)
241 cd03261 ABC_Org_Solvent_Resist 99.4 1.5E-12 3.2E-17 105.1 8.8 160 21-184 15-210 (235)
242 PRK11607 potG putrescine trans 99.4 8.7E-13 1.9E-17 113.0 7.9 156 23-182 36-221 (377)
243 PRK11388 DNA-binding transcrip 99.4 3.5E-11 7.6E-16 110.4 18.9 199 10-239 322-554 (638)
244 COG1136 SalX ABC-type antimicr 99.4 1.6E-12 3.6E-17 102.2 8.8 141 21-170 20-203 (226)
245 cd03231 ABC_CcmA_heme_exporter 99.4 4.5E-13 9.7E-18 105.5 5.7 159 20-185 14-199 (201)
246 COG3845 ABC-type uncharacteriz 99.4 4.6E-13 1E-17 114.3 6.0 167 15-185 13-214 (501)
247 cd03294 ABC_Pro_Gly_Bertaine T 99.4 4.2E-13 9.1E-18 110.3 5.7 147 36-184 52-234 (269)
248 cd03217 ABC_FeS_Assembly ABC-t 99.4 1.7E-12 3.7E-17 102.1 8.8 148 21-184 15-178 (200)
249 PRK13543 cytochrome c biogenes 99.4 6.8E-13 1.5E-17 105.5 6.5 156 20-183 25-209 (214)
250 COG1137 YhbG ABC-type (unclass 99.4 2.3E-14 4.9E-19 108.9 -2.0 162 13-186 11-214 (243)
251 cd03226 ABC_cobalt_CbiO_domain 99.4 3.3E-13 7.2E-18 106.6 4.5 159 21-184 15-199 (205)
252 cd03292 ABC_FtsE_transporter F 99.4 1.6E-12 3.5E-17 103.3 8.4 160 21-184 16-209 (214)
253 PRK11000 maltose/maltodextrin 99.4 1.3E-12 2.8E-17 111.9 8.3 159 21-183 18-206 (369)
254 TIGR01650 PD_CobS cobaltochela 99.4 7.1E-12 1.5E-16 103.9 12.2 182 7-220 39-251 (327)
255 TIGR00390 hslU ATP-dependent p 99.4 2E-11 4.3E-16 103.9 15.1 108 129-236 246-401 (441)
256 TIGR01186 proV glycine betaine 99.4 2.2E-13 4.9E-18 115.7 3.4 156 23-182 10-201 (363)
257 KOG0744 AAA+-type ATPase [Post 99.4 4.6E-12 1E-16 102.9 10.6 141 37-204 180-342 (423)
258 TIGR03258 PhnT 2-aminoethylpho 99.4 1.5E-12 3.2E-17 110.9 8.3 160 21-184 20-212 (362)
259 TIGR00368 Mg chelatase-related 99.4 3.4E-11 7.3E-16 106.3 17.0 170 10-193 189-395 (499)
260 cd03223 ABCD_peroxisomal_ALDP 99.4 5.7E-12 1.2E-16 96.1 10.7 141 22-183 17-159 (166)
261 cd03267 ABC_NatA_like Similar 99.4 7.7E-13 1.7E-17 106.7 6.2 147 36-184 49-227 (236)
262 PRK10908 cell division protein 99.4 2.4E-12 5.2E-17 102.9 9.0 160 21-184 17-210 (222)
263 cd03224 ABC_TM1139_LivF_branch 99.4 2E-12 4.4E-17 103.3 8.5 159 22-184 16-205 (222)
264 KOG1514 Origin recognition com 99.4 1E-11 2.3E-16 109.8 13.3 200 24-241 411-630 (767)
265 PRK10820 DNA-binding transcrip 99.4 5.9E-11 1.3E-15 106.0 18.3 201 8-239 199-437 (520)
266 PRK10584 putative ABC transpor 99.4 2.6E-12 5.6E-17 103.2 8.7 159 21-184 25-219 (228)
267 PRK05022 anaerobic nitric oxid 99.4 8.1E-11 1.8E-15 105.0 18.8 198 11-240 185-421 (509)
268 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 8.4E-12 1.8E-16 92.9 10.6 111 36-184 28-140 (144)
269 cd03219 ABC_Mj1267_LivG_branch 99.4 2.3E-12 5.1E-17 103.9 8.2 160 21-184 15-216 (236)
270 PRK09493 glnQ glutamine ABC tr 99.4 6E-13 1.3E-17 107.7 4.7 160 21-184 16-209 (240)
271 TIGR00968 3a0106s01 sulfate AB 99.4 3.2E-12 7E-17 103.2 8.9 160 21-184 15-204 (237)
272 cd03254 ABCC_Glucan_exporter_l 99.4 3.3E-12 7.1E-17 102.6 8.9 156 21-184 18-210 (229)
273 PRK11124 artP arginine transpo 99.4 8.8E-13 1.9E-17 106.8 5.6 161 20-184 16-214 (242)
274 PRK13548 hmuV hemin importer A 99.4 9E-13 2E-17 107.7 5.7 160 21-184 17-214 (258)
275 TIGR02315 ABC_phnC phosphonate 99.4 1.3E-12 2.9E-17 105.8 6.6 161 20-184 16-219 (243)
276 PRK11247 ssuB aliphatic sulfon 99.4 7.7E-13 1.7E-17 107.9 5.2 156 19-183 25-206 (257)
277 PRK10895 lipopolysaccharide AB 99.4 4.4E-12 9.6E-17 102.6 9.6 159 21-183 18-209 (241)
278 PRK11629 lolD lipoprotein tran 99.4 3.2E-12 6.9E-17 103.0 8.7 151 21-174 24-210 (233)
279 cd03300 ABC_PotA_N PotA is an 99.4 1.2E-12 2.6E-17 105.4 6.2 148 21-184 15-204 (232)
280 cd03251 ABCC_MsbA MsbA is an e 99.4 2.8E-12 6.1E-17 103.3 8.3 160 21-185 17-210 (234)
281 TIGR03740 galliderm_ABC gallid 99.4 5.2E-12 1.1E-16 101.0 9.8 155 22-182 16-195 (223)
282 PRK11153 metN DL-methionine tr 99.4 3.1E-12 6.6E-17 108.6 8.8 159 21-183 20-213 (343)
283 COG1221 PspF Transcriptional r 99.4 3.2E-11 7E-16 102.4 14.9 201 9-241 74-311 (403)
284 KOG0735 AAA+-type ATPase [Post 99.4 3.2E-11 7E-16 106.9 15.2 189 10-236 664-885 (952)
285 TIGR02211 LolD_lipo_ex lipopro 99.3 3.5E-12 7.5E-17 101.9 8.6 159 21-184 20-214 (221)
286 cd03297 ABC_ModC_molybdenum_tr 99.3 3.4E-12 7.3E-17 101.5 8.4 148 35-184 24-205 (214)
287 cd03245 ABCC_bacteriocin_expor 99.3 5.3E-12 1.1E-16 100.8 9.6 156 21-184 19-211 (220)
288 cd03235 ABC_Metallic_Cations A 99.3 7E-13 1.5E-17 105.3 4.5 160 21-184 14-205 (213)
289 KOG0743 AAA+-type ATPase [Post 99.3 2.1E-11 4.5E-16 103.4 13.4 153 7-204 195-385 (457)
290 PRK13539 cytochrome c biogenes 99.3 5.9E-12 1.3E-16 99.6 9.6 149 21-175 17-192 (207)
291 PRK11231 fecE iron-dicitrate t 99.3 3.4E-12 7.3E-17 104.2 8.4 160 21-184 17-211 (255)
292 PRK11331 5-methylcytosine-spec 99.3 4.7E-11 1E-15 102.7 15.7 166 12-199 174-369 (459)
293 PRK10247 putative ABC transpor 99.3 1.3E-12 2.7E-17 104.7 5.8 161 20-185 21-211 (225)
294 PRK11248 tauB taurine transpor 99.3 5.6E-12 1.2E-16 102.8 9.7 158 21-184 16-202 (255)
295 TIGR01189 ccmA heme ABC export 99.3 7E-12 1.5E-16 98.4 9.9 147 22-174 16-191 (198)
296 PRK13650 cbiO cobalt transport 99.3 2.3E-12 5.1E-17 106.4 7.5 159 21-184 22-213 (279)
297 PRK05201 hslU ATP-dependent pr 99.3 2.5E-11 5.5E-16 103.3 13.8 108 130-237 249-404 (443)
298 cd03237 ABC_RNaseL_inhibitor_d 99.3 1E-11 2.2E-16 100.7 11.0 169 37-211 28-222 (246)
299 PRK11144 modC molybdate transp 99.3 3.3E-12 7.2E-17 108.8 8.4 140 36-183 26-201 (352)
300 COG1117 PstB ABC-type phosphat 99.3 3.3E-12 7.1E-17 98.2 7.5 158 11-171 12-209 (253)
301 cd03234 ABCG_White The White s 99.3 4E-12 8.6E-17 101.9 8.4 162 21-185 22-218 (226)
302 cd03295 ABC_OpuCA_Osmoprotecti 99.3 4.4E-12 9.5E-17 102.7 8.6 160 21-184 16-209 (242)
303 PRK13635 cbiO cobalt transport 99.3 2.3E-12 5E-17 106.5 7.1 159 21-184 22-213 (279)
304 COG0714 MoxR-like ATPases [Gen 99.3 3.6E-11 7.8E-16 101.7 14.4 153 15-198 26-198 (329)
305 TIGR03411 urea_trans_UrtD urea 99.3 6.4E-12 1.4E-16 101.7 9.4 160 21-184 17-215 (242)
306 PRK10851 sulfate/thiosulfate t 99.3 5.8E-12 1.3E-16 107.1 9.5 158 22-183 18-209 (353)
307 cd03260 ABC_PstB_phosphate_tra 99.3 1.5E-12 3.3E-17 104.4 5.6 159 21-183 15-212 (227)
308 TIGR01187 potA spermidine/putr 99.3 2.8E-12 6.2E-17 108.1 7.5 143 39-183 1-173 (325)
309 TIGR02314 ABC_MetN D-methionin 99.3 5E-12 1.1E-16 106.9 9.0 158 21-182 20-212 (343)
310 COG4133 CcmA ABC-type transpor 99.3 9.4E-12 2E-16 93.8 9.4 129 36-176 30-196 (209)
311 TIGR01184 ntrCD nitrate transp 99.3 7.2E-12 1.6E-16 100.7 9.5 145 36-184 13-188 (230)
312 PRK11264 putative amino-acid A 99.3 1.6E-12 3.4E-17 105.8 5.7 162 20-185 17-218 (250)
313 cd03214 ABC_Iron-Siderophores_ 99.3 1.7E-12 3.6E-17 100.4 5.6 148 22-185 15-172 (180)
314 TIGR03608 L_ocin_972_ABC putat 99.3 1.3E-12 2.9E-17 103.1 5.0 156 21-181 13-203 (206)
315 PRK11614 livF leucine/isoleuci 99.3 1E-12 2.2E-17 106.1 4.4 161 20-184 19-210 (237)
316 PRK14247 phosphate ABC transpo 99.3 2.4E-12 5.3E-17 104.7 6.6 162 20-185 17-219 (250)
317 COG4586 ABC-type uncharacteriz 99.3 1.5E-12 3.3E-17 103.5 5.2 154 37-192 53-238 (325)
318 PRK13538 cytochrome c biogenes 99.3 6.3E-12 1.4E-16 99.2 8.7 149 21-174 16-193 (204)
319 PRK13632 cbiO cobalt transport 99.3 4.4E-12 9.5E-17 104.4 8.1 159 21-184 24-215 (271)
320 PRK13541 cytochrome c biogenes 99.3 1.4E-11 3E-16 96.5 10.6 135 36-174 28-187 (195)
321 COG1129 MglA ABC-type sugar tr 99.3 1.3E-12 2.9E-17 113.2 5.1 169 11-183 13-217 (500)
322 PRK13647 cbiO cobalt transport 99.3 4E-12 8.6E-17 104.8 7.7 158 21-182 20-209 (274)
323 TIGR01166 cbiO cobalt transpor 99.3 2.3E-12 5E-17 100.5 6.0 148 21-171 7-188 (190)
324 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 5.6E-12 1.2E-16 101.9 8.4 156 21-184 18-210 (238)
325 cd03256 ABC_PhnC_transporter A 99.3 6.3E-12 1.4E-16 101.7 8.7 160 21-184 16-218 (241)
326 cd03244 ABCC_MRP_domain2 Domai 99.3 1.1E-11 2.3E-16 99.1 9.9 155 21-184 19-210 (221)
327 PRK14250 phosphate ABC transpo 99.3 6.5E-12 1.4E-16 101.6 8.7 159 21-184 18-205 (241)
328 PRK13540 cytochrome c biogenes 99.3 9.5E-12 2E-16 97.9 9.3 148 21-173 16-190 (200)
329 cd03257 ABC_NikE_OppD_transpor 99.3 8.2E-12 1.8E-16 100.2 9.0 160 21-184 20-219 (228)
330 TIGR03873 F420-0_ABC_ATP propo 99.3 6.8E-12 1.5E-16 102.4 8.6 160 21-184 16-210 (256)
331 TIGR02142 modC_ABC molybdenum 99.3 6.5E-12 1.4E-16 107.1 8.7 146 36-183 25-204 (354)
332 PRK10253 iron-enterobactin tra 99.3 1.9E-12 4.2E-17 106.2 5.2 161 20-184 21-217 (265)
333 PRK10575 iron-hydroxamate tran 99.3 7.3E-12 1.6E-16 102.8 8.4 161 20-184 25-221 (265)
334 cd03253 ABCC_ATM1_transporter 99.3 8.3E-12 1.8E-16 100.7 8.6 156 21-184 16-208 (236)
335 PF07724 AAA_2: AAA domain (Cd 99.3 1.2E-11 2.6E-16 94.5 8.9 106 35-172 4-132 (171)
336 PRK15429 formate hydrogenlyase 99.3 1.6E-10 3.5E-15 106.7 17.9 206 10-240 373-610 (686)
337 TIGR03005 ectoine_ehuA ectoine 99.3 8.5E-12 1.8E-16 101.7 8.4 161 21-185 15-221 (252)
338 cd03369 ABCC_NFT1 Domain 2 of 99.3 4E-12 8.6E-17 100.5 6.3 153 21-184 23-196 (207)
339 PRK15112 antimicrobial peptide 99.3 3.8E-12 8.3E-17 104.5 6.4 160 21-184 28-223 (267)
340 cd03252 ABCC_Hemolysin The ABC 99.3 7.1E-12 1.5E-16 101.2 7.8 156 21-184 17-209 (237)
341 PHA02244 ATPase-like protein 99.3 7.6E-11 1.7E-15 99.0 14.1 132 23-191 110-263 (383)
342 cd03299 ABC_ModC_like Archeal 99.3 1E-11 2.3E-16 100.1 8.7 159 22-184 15-203 (235)
343 PRK13648 cbiO cobalt transport 99.3 5.7E-12 1.2E-16 103.6 7.3 159 21-184 24-215 (269)
344 PRK14267 phosphate ABC transpo 99.3 3.8E-12 8.2E-17 103.8 6.2 162 19-184 17-221 (253)
345 KOG0732 AAA+-type ATPase conta 99.3 1.4E-10 2.9E-15 107.7 16.9 197 10-238 262-488 (1080)
346 TIGR00972 3a0107s01c2 phosphat 99.3 4.1E-12 9E-17 103.2 6.3 160 21-184 16-216 (247)
347 PRK13644 cbiO cobalt transport 99.3 6.8E-12 1.5E-16 103.4 7.6 159 21-184 17-208 (274)
348 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 2.6E-12 5.7E-17 102.8 4.9 144 36-184 50-215 (224)
349 PRK10070 glycine betaine trans 99.3 9.1E-12 2E-16 107.2 8.5 146 36-183 56-237 (400)
350 PRK14259 phosphate ABC transpo 99.3 1.1E-11 2.3E-16 102.0 8.6 161 21-185 28-227 (269)
351 PRK14253 phosphate ABC transpo 99.3 5.3E-12 1.1E-16 102.7 6.7 161 20-184 17-217 (249)
352 PRK10744 pstB phosphate transp 99.3 4.7E-12 1E-16 103.6 6.4 161 20-184 27-228 (260)
353 PRK11831 putative ABC transpor 99.3 1.3E-11 2.8E-16 101.5 9.0 158 22-183 23-216 (269)
354 PRK13643 cbiO cobalt transport 99.3 4.8E-12 1E-16 105.0 6.4 159 21-183 21-216 (288)
355 TIGR02982 heterocyst_DevA ABC 99.3 1.4E-11 2.9E-16 98.4 8.8 159 21-184 20-214 (220)
356 cd03248 ABCC_TAP TAP, the Tran 99.3 7.4E-12 1.6E-16 100.3 7.3 159 21-184 29-221 (226)
357 PRK14273 phosphate ABC transpo 99.3 3E-12 6.6E-17 104.4 5.0 162 19-184 20-222 (254)
358 PRK11300 livG leucine/isoleuci 99.3 1.5E-11 3.2E-16 100.4 9.0 160 21-184 20-227 (255)
359 smart00763 AAA_PrkA PrkA AAA d 99.3 2.5E-10 5.4E-15 95.8 16.4 93 128-220 234-348 (361)
360 PRK13638 cbiO cobalt transport 99.3 3.7E-12 8.1E-17 104.8 5.5 161 20-184 15-209 (271)
361 PRK15439 autoinducer 2 ABC tra 99.3 1.5E-12 3.3E-17 116.3 3.3 162 17-183 22-212 (510)
362 PRK13652 cbiO cobalt transport 99.3 1E-11 2.3E-16 102.5 8.0 159 21-183 19-210 (277)
363 cd00267 ABC_ATPase ABC (ATP-bi 99.3 3.3E-11 7.2E-16 91.1 10.1 123 36-182 27-151 (157)
364 COG1134 TagH ABC-type polysacc 99.3 5.2E-12 1.1E-16 99.2 5.6 141 36-185 55-221 (249)
365 PRK13640 cbiO cobalt transport 99.3 8.3E-12 1.8E-16 103.3 7.1 159 21-184 22-216 (282)
366 KOG2227 Pre-initiation complex 99.3 2E-11 4.4E-16 103.6 9.3 204 13-236 150-376 (529)
367 KOG1051 Chaperone HSP104 and r 99.3 3.8E-11 8.3E-16 110.4 11.8 129 14-169 563-710 (898)
368 cd03289 ABCC_CFTR2 The CFTR su 99.3 7.6E-12 1.7E-16 102.9 6.6 153 21-183 19-208 (275)
369 PRK13546 teichoic acids export 99.3 2.9E-11 6.3E-16 99.0 10.0 142 36-184 52-216 (264)
370 PRK10619 histidine/lysine/argi 99.3 2.3E-11 5E-16 99.4 9.4 161 21-185 20-226 (257)
371 COG1119 ModF ABC-type molybden 99.3 2.3E-11 5.1E-16 95.6 8.9 161 18-181 43-244 (257)
372 COG4618 ArpD ABC-type protease 99.3 3.9E-12 8.4E-17 109.0 4.9 139 19-171 349-533 (580)
373 PRK14248 phosphate ABC transpo 99.3 8.1E-12 1.8E-16 102.7 6.6 162 20-184 35-236 (268)
374 PRK14242 phosphate transporter 99.3 8E-12 1.7E-16 101.9 6.5 163 20-185 20-222 (253)
375 TIGR02770 nickel_nikD nickel i 99.3 2.2E-11 4.7E-16 97.9 8.9 146 36-184 14-199 (230)
376 PRK14251 phosphate ABC transpo 99.3 7.1E-12 1.5E-16 102.0 6.0 162 20-185 18-220 (251)
377 COG4148 ModC ABC-type molybdat 99.3 5.7E-12 1.2E-16 100.6 5.2 142 37-186 27-204 (352)
378 PRK13641 cbiO cobalt transport 99.3 7.2E-12 1.6E-16 103.9 6.1 160 21-184 22-218 (287)
379 PRK08116 hypothetical protein; 99.3 2.5E-11 5.5E-16 99.4 9.2 155 5-191 77-251 (268)
380 PRK12377 putative replication 99.3 8E-11 1.7E-15 94.9 11.9 152 5-190 66-236 (248)
381 PRK14269 phosphate ABC transpo 99.3 2.9E-11 6.2E-16 98.2 9.4 160 21-184 17-214 (246)
382 COG1219 ClpX ATP-dependent pro 99.3 1.6E-10 3.5E-15 93.9 13.3 190 16-236 64-364 (408)
383 PRK13765 ATP-dependent proteas 99.3 7.5E-10 1.6E-14 100.1 19.2 52 7-60 25-76 (637)
384 TIGR00764 lon_rel lon-related 99.3 5.7E-10 1.2E-14 101.1 18.4 109 129-237 216-369 (608)
385 PRK09544 znuC high-affinity zi 99.3 3.4E-11 7.3E-16 98.0 9.6 154 22-184 20-194 (251)
386 PRK09862 putative ATP-dependen 99.3 5E-11 1.1E-15 104.9 11.2 168 10-191 188-390 (506)
387 PRK14270 phosphate ABC transpo 99.3 1.6E-11 3.5E-16 100.0 7.7 160 21-184 19-219 (251)
388 PRK14256 phosphate ABC transpo 99.3 3.6E-11 7.8E-16 98.0 9.6 160 21-184 19-220 (252)
389 PRK13634 cbiO cobalt transport 99.3 1E-11 2.2E-16 103.2 6.4 160 21-184 22-219 (290)
390 PRK13651 cobalt transporter AT 99.3 8.3E-12 1.8E-16 104.3 5.9 159 21-183 22-237 (305)
391 COG1135 AbcC ABC-type metal io 99.3 1E-11 2.2E-16 100.6 6.1 159 20-182 20-213 (339)
392 PRK13633 cobalt transporter AT 99.3 4.8E-12 1E-16 104.7 4.4 159 21-184 25-217 (280)
393 PRK07952 DNA replication prote 99.2 5.6E-11 1.2E-15 95.6 10.3 154 4-190 63-235 (244)
394 PLN03211 ABC transporter G-25; 99.2 1.7E-11 3.8E-16 112.1 8.2 158 21-181 83-277 (659)
395 PRK03695 vitamin B12-transport 99.2 9.2E-12 2E-16 101.2 5.8 157 23-184 13-206 (248)
396 PRK14262 phosphate ABC transpo 99.2 4.1E-11 8.9E-16 97.5 9.5 160 21-184 18-218 (250)
397 COG2274 SunT ABC-type bacterio 99.2 9.2E-12 2E-16 113.8 6.3 141 20-173 487-671 (709)
398 PRK13642 cbiO cobalt transport 99.2 1.6E-11 3.5E-16 101.4 7.2 158 21-183 22-212 (277)
399 PRK14238 phosphate transporter 99.2 1.9E-11 4.1E-16 100.6 7.5 160 21-184 39-239 (271)
400 PRK14240 phosphate transporter 99.2 1.6E-11 3.5E-16 99.9 7.1 162 20-184 17-218 (250)
401 COG0411 LivG ABC-type branched 99.2 1.6E-12 3.4E-17 102.0 1.1 170 16-189 14-228 (250)
402 TIGR02031 BchD-ChlD magnesium 99.2 4.4E-10 9.5E-15 101.6 16.9 186 21-237 3-236 (589)
403 PRK10762 D-ribose transporter 99.2 5.3E-12 1.1E-16 112.7 4.5 160 20-183 18-213 (501)
404 PRK10418 nikD nickel transport 99.2 5.2E-11 1.1E-15 97.1 10.0 157 21-184 18-214 (254)
405 TIGR03771 anch_rpt_ABC anchore 99.2 5.7E-11 1.2E-15 95.0 10.0 144 36-183 8-185 (223)
406 COG2204 AtoC Response regulato 99.2 8.4E-10 1.8E-14 95.5 17.7 205 10-240 138-375 (464)
407 PRK14241 phosphate transporter 99.2 4.6E-11 1E-15 97.7 9.6 161 20-184 18-220 (258)
408 PRK09700 D-allose transporter 99.2 3.9E-12 8.5E-17 113.7 3.6 161 20-184 19-218 (510)
409 PRK14243 phosphate transporter 99.2 8.4E-12 1.8E-16 102.3 5.2 163 20-185 24-224 (264)
410 PRK13636 cbiO cobalt transport 99.2 1.3E-11 2.8E-16 102.2 6.3 159 21-183 21-214 (283)
411 PRK14235 phosphate transporter 99.2 6E-11 1.3E-15 97.5 10.2 160 22-184 35-235 (267)
412 PRK13547 hmuV hemin importer A 99.2 8.1E-12 1.7E-16 102.7 4.9 161 20-184 15-228 (272)
413 PRK14246 phosphate ABC transpo 99.2 1.4E-11 3E-16 100.6 6.2 56 128-184 169-225 (257)
414 TIGR02769 nickel_nikE nickel i 99.2 1.1E-11 2.4E-16 101.7 5.6 160 21-184 26-224 (265)
415 PRK14239 phosphate transporter 99.2 1.5E-11 3.3E-16 100.1 6.4 162 20-184 19-220 (252)
416 COG1123 ATPase components of v 99.2 1.7E-11 3.8E-16 107.1 7.0 154 20-183 305-502 (539)
417 TIGR02324 CP_lyasePhnL phospho 99.2 3.8E-11 8.2E-16 96.1 8.5 158 21-182 23-220 (224)
418 PRK14272 phosphate ABC transpo 99.2 1.3E-11 2.9E-16 100.5 6.0 56 128-184 164-220 (252)
419 PRK14237 phosphate transporter 99.2 3.5E-11 7.5E-16 98.9 8.4 160 21-184 35-235 (267)
420 TIGR01978 sufC FeS assembly AT 99.2 3.4E-11 7.4E-16 97.5 8.3 160 21-183 15-217 (243)
421 PRK13549 xylose transporter AT 99.2 6.2E-12 1.3E-16 112.4 4.3 163 17-183 16-215 (506)
422 PRK13649 cbiO cobalt transport 99.2 3.4E-11 7.4E-16 99.6 8.4 159 21-183 22-217 (280)
423 cd03288 ABCC_SUR2 The SUR doma 99.2 8.6E-11 1.9E-15 96.0 10.6 142 36-184 49-227 (257)
424 PRK14261 phosphate ABC transpo 99.2 6E-11 1.3E-15 96.7 9.6 161 21-184 21-221 (253)
425 COG0542 clpA ATP-binding subun 99.2 3.6E-10 7.9E-15 102.8 15.5 205 8-239 165-393 (786)
426 smart00350 MCM minichromosome 99.2 5.5E-10 1.2E-14 99.6 16.4 73 130-202 300-400 (509)
427 PRK15177 Vi polysaccharide exp 99.2 1.7E-11 3.6E-16 97.4 5.8 141 37-183 16-175 (213)
428 PRK14265 phosphate ABC transpo 99.2 7.7E-11 1.7E-15 97.2 10.0 57 128-185 177-234 (274)
429 COG4608 AppF ABC-type oligopep 99.2 2.4E-11 5.2E-16 97.2 6.6 141 20-189 27-188 (268)
430 PRK13637 cbiO cobalt transport 99.2 3.7E-11 8.1E-16 99.7 8.1 160 21-184 22-218 (287)
431 TIGR01257 rim_protein retinal- 99.2 7E-12 1.5E-16 124.9 4.2 132 37-181 1968-2140(2272)
432 PRK14263 phosphate ABC transpo 99.2 6.1E-11 1.3E-15 97.1 9.0 160 22-185 24-222 (261)
433 PRK14271 phosphate ABC transpo 99.2 1.5E-11 3.4E-16 101.4 5.5 160 21-184 36-235 (276)
434 PRK13631 cbiO cobalt transport 99.2 3.9E-11 8.5E-16 100.8 8.0 159 21-183 41-248 (320)
435 PRK14255 phosphate ABC transpo 99.2 1.8E-11 4E-16 99.7 5.9 56 128-184 164-220 (252)
436 PRK14268 phosphate ABC transpo 99.2 5.3E-11 1.2E-15 97.3 8.6 160 21-184 27-226 (258)
437 PRK13646 cbiO cobalt transport 99.2 1.9E-11 4E-16 101.4 5.9 159 21-183 22-218 (286)
438 KOG0651 26S proteasome regulat 99.2 1.2E-10 2.6E-15 94.2 10.2 174 9-223 128-339 (388)
439 TIGR03415 ABC_choXWV_ATP choli 99.2 6E-11 1.3E-15 101.5 9.0 144 37-182 53-236 (382)
440 PRK14274 phosphate ABC transpo 99.2 4.7E-11 1E-15 97.7 8.0 161 21-184 27-227 (259)
441 PRK09984 phosphonate/organopho 99.2 2.6E-11 5.6E-16 99.4 6.5 161 19-183 17-225 (262)
442 TIGR01257 rim_protein retinal- 99.2 8E-12 1.7E-16 124.5 4.0 143 37-181 959-1130(2272)
443 PRK10982 galactose/methyl gala 99.2 1.1E-11 2.4E-16 110.4 4.5 159 21-183 13-206 (491)
444 PRK10419 nikE nickel transport 99.2 7E-11 1.5E-15 97.1 8.9 160 21-184 27-225 (268)
445 PRK13645 cbiO cobalt transport 99.2 5.7E-11 1.2E-15 98.7 8.4 160 21-184 26-224 (289)
446 PRK10938 putative molybdenum t 99.2 1.6E-11 3.5E-16 109.3 5.4 162 17-182 14-206 (490)
447 PRK13639 cbiO cobalt transport 99.2 3.9E-11 8.5E-16 99.0 7.3 159 21-183 17-209 (275)
448 PRK14275 phosphate ABC transpo 99.2 4.4E-11 9.5E-16 99.2 7.6 56 128-184 198-254 (286)
449 COG3638 ABC-type phosphate/pho 99.2 4.8E-11 1E-15 93.2 7.1 182 17-201 15-243 (258)
450 TIGR02868 CydC thiol reductant 99.2 3.5E-11 7.7E-16 108.2 7.4 143 21-170 350-529 (529)
451 PRK14244 phosphate ABC transpo 99.2 1.3E-10 2.8E-15 94.7 10.0 56 128-184 165-221 (251)
452 PRK14236 phosphate transporter 99.2 1E-10 2.2E-15 96.4 9.6 162 21-185 40-241 (272)
453 PRK14249 phosphate ABC transpo 99.2 1.3E-10 2.8E-15 94.6 9.9 160 21-184 19-219 (251)
454 KOG0730 AAA+-type ATPase [Post 99.2 7.8E-10 1.7E-14 97.6 15.1 174 13-223 184-384 (693)
455 PRK15056 manganese/iron transp 99.2 1.1E-10 2.3E-15 96.2 9.4 156 22-181 23-212 (272)
456 PRK14264 phosphate ABC transpo 99.2 3.5E-11 7.5E-16 100.7 6.5 53 128-181 216-269 (305)
457 PRK14257 phosphate ABC transpo 99.2 4.5E-11 9.8E-16 100.8 6.8 161 21-184 97-297 (329)
458 PRK14254 phosphate ABC transpo 99.2 1.5E-10 3.2E-15 96.0 9.8 158 21-181 54-249 (285)
459 PF07728 AAA_5: AAA domain (dy 99.2 5.4E-11 1.2E-15 88.0 6.4 52 130-181 65-139 (139)
460 PRK14245 phosphate ABC transpo 99.2 1.4E-10 3.1E-15 94.3 9.4 162 21-185 18-219 (250)
461 PRK15079 oligopeptide ABC tran 99.2 8.9E-11 1.9E-15 99.1 8.4 160 21-184 36-235 (331)
462 PRK10923 glnG nitrogen regulat 99.2 3E-09 6.6E-14 94.3 18.5 195 11-239 136-371 (469)
463 KOG0059 Lipid exporter ABCA1 a 99.2 3.7E-11 8E-16 113.4 6.6 158 11-181 569-768 (885)
464 TIGR02915 PEP_resp_reg putativ 99.2 2.8E-09 6.2E-14 93.9 18.2 198 11-240 137-373 (445)
465 COG4559 ABC-type hemin transpo 99.2 3.5E-11 7.6E-16 92.5 5.2 163 16-183 11-213 (259)
466 PRK14260 phosphate ABC transpo 99.2 1.9E-10 4.1E-15 94.1 10.0 57 128-185 166-223 (259)
467 PRK11176 lipid transporter ATP 99.2 1.3E-10 2.7E-15 105.8 9.8 146 21-171 358-540 (582)
468 PRK11160 cysteine/glutathione 99.2 1.5E-10 3.2E-15 105.0 10.0 156 21-184 355-546 (574)
469 PRK14266 phosphate ABC transpo 99.2 1.3E-10 2.8E-15 94.6 8.6 160 21-183 18-217 (250)
470 cd03250 ABCC_MRP_domain1 Domai 99.2 1.2E-10 2.5E-15 91.9 8.1 150 21-184 20-200 (204)
471 CHL00131 ycf16 sulfate ABC tra 99.2 2.1E-10 4.5E-15 93.5 9.5 161 21-183 22-224 (252)
472 PRK09700 D-allose transporter 99.2 3.5E-11 7.6E-16 107.7 5.3 158 22-183 279-481 (510)
473 TIGR01192 chvA glucan exporter 99.2 1.2E-10 2.6E-15 105.8 8.8 156 21-184 350-542 (585)
474 TIGR03375 type_I_sec_LssB type 99.2 2.3E-10 5E-15 106.1 10.8 155 21-183 480-671 (694)
475 PRK11288 araG L-arabinose tran 99.2 1E-10 2.2E-15 104.5 8.0 158 21-182 19-211 (501)
476 PRK13409 putative ATPase RIL; 99.1 1.9E-10 4.1E-15 104.1 9.8 139 37-183 368-526 (590)
477 TIGR01846 type_I_sec_HlyB type 99.1 2.4E-10 5.2E-15 106.0 10.6 156 21-184 472-664 (694)
478 PRK14252 phosphate ABC transpo 99.1 2.9E-10 6.2E-15 93.3 9.9 56 128-184 177-233 (265)
479 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 6.8E-11 1.5E-15 106.7 6.7 54 128-184 177-231 (552)
480 PRK11174 cysteine/glutathione 99.1 3.1E-10 6.7E-15 103.4 11.0 145 21-172 365-546 (588)
481 PRK13545 tagH teichoic acids e 99.1 2E-10 4.3E-15 101.0 9.3 156 21-184 39-216 (549)
482 PRK10789 putative multidrug tr 99.1 1.3E-10 2.9E-15 105.3 8.2 146 21-172 330-512 (569)
483 PRK08181 transposase; Validate 99.1 2.3E-10 4.9E-15 93.4 8.8 132 23-191 97-244 (269)
484 PRK11701 phnK phosphonate C-P 99.1 2.5E-10 5.4E-15 93.4 8.9 160 21-184 21-225 (258)
485 cd03291 ABCC_CFTR1 The CFTR su 99.1 2.8E-10 6.1E-15 94.0 9.2 148 21-182 52-229 (282)
486 PRK09580 sufC cysteine desulfu 99.1 1.1E-10 2.5E-15 94.8 6.8 159 21-182 16-217 (248)
487 TIGR02633 xylG D-xylose ABC tr 99.1 4E-11 8.6E-16 107.1 4.4 160 20-183 15-213 (500)
488 PRK11819 putative ABC transpor 99.1 6.7E-11 1.5E-15 106.8 5.9 156 21-184 339-515 (556)
489 smart00382 AAA ATPases associa 99.1 2E-09 4.3E-14 78.9 12.8 27 35-61 3-29 (148)
490 PRK11819 putative ABC transpor 99.1 9.8E-11 2.1E-15 105.8 6.8 54 128-184 179-233 (556)
491 TIGR01818 ntrC nitrogen regula 99.1 6.3E-09 1.4E-13 92.2 18.1 111 130-240 228-368 (463)
492 COG1239 ChlI Mg-chelatase subu 99.1 5.9E-09 1.3E-13 88.2 16.8 188 12-203 16-233 (423)
493 PRK15064 ABC transporter ATP-b 99.1 7.1E-11 1.5E-15 106.2 5.8 156 21-185 334-509 (530)
494 cd03238 ABC_UvrA The excision 99.1 5.9E-10 1.3E-14 85.5 10.0 52 131-184 108-161 (176)
495 PRK13657 cyclic beta-1,2-gluca 99.1 3.9E-10 8.5E-15 102.7 10.6 154 21-182 350-540 (588)
496 PRK11361 acetoacetate metaboli 99.1 5.5E-09 1.2E-13 92.4 17.6 112 129-240 236-377 (457)
497 COG4181 Predicted ABC-type tra 99.1 4.4E-10 9.5E-15 83.8 8.8 139 37-181 39-213 (228)
498 TIGR02857 CydD thiol reductant 99.1 3.1E-10 6.7E-15 102.1 9.7 146 21-172 337-519 (529)
499 KOG0058 Peptide exporter, ABC 99.1 1.7E-10 3.6E-15 103.0 7.7 149 21-175 483-668 (716)
500 cd03236 ABC_RNaseL_inhibitor_d 99.1 3.3E-10 7.2E-15 92.3 8.9 56 128-184 155-212 (255)
No 1
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-42 Score=275.77 Aligned_cols=214 Identities=37% Similarity=0.575 Sum_probs=177.2
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
|.|+|||||++|++++||+.+++.|.+.+..+..||++|+||||||||++|+++|++++|++.-. ++.+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~-----------~rvl 92 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFP-----------CRVL 92 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccc-----------cchh
Confidence 57999999999999999999999999999988899999999999999999999999999855321 1111
Q ss_pred ccccceeeecccceeeeCCCC-cCcchhHHHHHHHHHHHhc---CCCcCC-CCCCeeEEEEeCCCCCCHHHHHHHHHHHH
Q 025758 81 NIDLELTTLSSANHVELSPSD-AGFQDRYVVQEVIKEMAKN---RPIDTK-GKRGFKVLVLNEVDKLSREAQHSLRRTME 155 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~viiiDE~d~l~~~~~~~ll~~le 155 (248)
+...++ .|.. .+++.++.++.. .+.... .-..++|+||||+|.|..+++++|.+++|
T Consensus 93 ---------------~lnaSderGis---vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE 154 (346)
T KOG0989|consen 93 ---------------ELNASDERGIS---VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME 154 (346)
T ss_pred ---------------hhccccccccc---chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh
Confidence 111111 1111 122333333221 111111 13356999999999999999999999999
Q ss_pred HhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHH
Q 025758 156 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (248)
Q Consensus 156 ~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 235 (248)
.++..++||||||+.+.+..++.|||..++|+++.++.+..+|+.++.+|++.++++++++|++.++||+|.|+..||.+
T Consensus 155 ~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 155 DFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred ccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccc
Q 025758 236 RVQQLRFT 243 (248)
Q Consensus 236 ~~~~~~~~ 243 (248)
...+..++
T Consensus 235 s~~gk~It 242 (346)
T KOG0989|consen 235 SLLGKRIT 242 (346)
T ss_pred hccCcccc
Confidence 98777665
No 2
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-40 Score=261.11 Aligned_cols=242 Identities=57% Similarity=0.941 Sum_probs=230.1
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
|+|+|||||++++.++++.+....|......+..||++++||+|+||-|.+.++.+++++++..+.++....|. .|..
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~--tpS~ 78 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT--TPSK 78 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe--cCCC
Confidence 89999999999999999999999999998888899999999999999999999999999999999999998887 6666
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
.+ .+..+++.++++++.|++.|..+...++++++..+...+.........+|++|.|+|.|..++|.+|.+++|.+..+
T Consensus 79 kk-lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 79 KK-LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred ce-EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 54 78899999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 240 (248)
.++|+.+|..+.+.++++|||..++.+.|+++++..++.+++++|++.++++.+..|++.++||+|.++-+|+..+....
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccCC
Q 025758 241 RFTMP 245 (248)
Q Consensus 241 ~~~~~ 245 (248)
..+.+
T Consensus 238 ~~~a~ 242 (351)
T KOG2035|consen 238 PFTAN 242 (351)
T ss_pred ccccc
Confidence 66554
No 3
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.9e-40 Score=282.73 Aligned_cols=221 Identities=23% Similarity=0.304 Sum_probs=183.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+|++||||++|+|++||+.+++.|..++..++.+| ++|+||+|+||||+|+++|+.++|........ |..|
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p--------Cg~C 78 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP--------CNEC 78 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc--------cCCC
Confidence 69999999999999999999999999999999998 99999999999999999999998865433222 3333
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+......+.+++.+.... ....+++..+.+.. .+. .+.++|+||||+|+|+..++++|++.+|+++..
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~--gVd~IReL~e~l~~-~p~----~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~ 151 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNR--GIENIRELRDNVKF-APM----GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH 151 (484)
T ss_pred cHHHHHHccCCccceeechhhcc--cHHHHHHHHHHHHh-hhh----cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc
Confidence 33333444444455555553211 12234554444432 221 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.||++|+++..+.++++|||..+.|.+++.+++.+++.+++.++|+.++++++..|++.++|++|.++++|+++..
T Consensus 152 viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 152 IVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred eEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988654
No 4
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.7e-40 Score=290.59 Aligned_cols=222 Identities=21% Similarity=0.314 Sum_probs=184.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+++++.|++++..++++| +||+||+|+||||+++++++.++|....... .|+.|
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~--------PCG~C 76 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ--------PCGVC 76 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC--------CCccc
Confidence 48999999999999999999999999999999999 7999999999999999999999987532111 14444
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+......+.+++...+. .....++++++.... .+. .+.++|+||||+|+|+..++|.|+|+||+++.+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~--rgVDdIReLIe~a~~-~P~----~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASN--RGVDEMAALLERAVY-APV----DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred HHHHHHhcCCCceEEEeccccc--ccHHHHHHHHHHHHh-ccc----cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 4434443334445566655422 222345555554432 222 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
++|||+|++...++++|+|||..++|.+++.+++.++|.+++.+|++.++++.+..|++.++|++|+++++|++....
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAY 227 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998776643
No 5
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-39 Score=282.23 Aligned_cols=224 Identities=22% Similarity=0.344 Sum_probs=192.2
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
|.|++||||++|+|++||+.+++.|++++..++++| +||+||+|+||||+|+++|..++|........ |+.
T Consensus 1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~p--------Cg~ 72 (491)
T PRK14964 1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDP--------CGT 72 (491)
T ss_pred CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCC--------ccc
Confidence 899999999999999999999999999999999997 99999999999999999999999976433222 445
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
|..|........++.+++.+.+. .....+++.++... +.|. .+.++|+||||+++|+..+.++|++++|+++.
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~--~~vddIR~Iie~~~-~~P~----~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASN--TSVDDIKVILENSC-YLPI----SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccC--CCHHHHHHHHHHHH-hccc----cCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 55555555556677777776532 23334666665543 3333 45889999999999999999999999999999
Q ss_pred CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
.+.||++|++...+.++++|||..+.|.+++.+++.+++..++.++++.+++++++.|++.++|++|.+++.|+.++...
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~ 225 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYS 225 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987543
No 6
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-39 Score=285.82 Aligned_cols=226 Identities=21% Similarity=0.335 Sum_probs=185.8
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|+|++||+++++.|++++..++++| +||+||+|+||||+|+.+|+.++|...... .+ .....|+.|
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g-~~~~PCG~C 81 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GG-ITAQPCGQC 81 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--cc-CCCCCCccc
Confidence 48999999999999999999999999999999999 899999999999999999999999542100 00 000114444
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+....+.+.+++...+. .....++++++.+... +. .+.++|+||||+|+|+..+.|+|+|+||+++.+
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~-P~----~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~ 154 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYA-PT----AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH 154 (700)
T ss_pred HHHHHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhc-hh----cCCceEEEEEChHhcCHHHHHHHHHhhccCCCC
Confidence 4444444455556666665432 2233456655544432 22 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.|||+|+++..++++++|||+.+.|.+++.+++.++|.+++.++++.++++.+..|++.++|++|.++++++++..
T Consensus 155 v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 155 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA 231 (700)
T ss_pred ceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987554
No 7
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=7.5e-39 Score=268.77 Aligned_cols=206 Identities=32% Similarity=0.561 Sum_probs=173.6
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
++|+|||||++|++++||+++++.|+.++..++.+|++|+||||+||||+|+++|++++++....
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~--------------- 65 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKE--------------- 65 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCcc---------------
Confidence 58999999999999999999999999999999999999999999999999999999987654210
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..+++.+.+.. ....+++.++.+...... + ..+.++|++|||+|.|...++++|++.+|.++..
T Consensus 66 ------------~~~eln~sd~~--~~~~vr~~i~~~~~~~~~-~-~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~ 129 (319)
T PLN03025 66 ------------AVLELNASDDR--GIDVVRNKIKMFAQKKVT-L-PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT 129 (319)
T ss_pred ------------ceeeecccccc--cHHHHHHHHHHHHhcccc-C-CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC
Confidence 01333332221 122355555555443211 1 1246899999999999999999999999998888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.||+++|....+.++++|||..+.|++++.+++..++..++.++|+.++++++++++..++||+|.+++.||.+..
T Consensus 130 t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~ 206 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS 206 (319)
T ss_pred ceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999996654
No 8
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.4e-39 Score=282.15 Aligned_cols=222 Identities=22% Similarity=0.313 Sum_probs=188.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|+|++||+.+++.|+.++..++++| +||+||+|+||||+|+++|+.++|....... .|+.|
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~--------pCg~C 76 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAN--------PCNDC 76 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcc--------cCCCC
Confidence 59999999999999999999999999999999999 8999999999999999999999997532211 14555
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++.+++.+.+. .....+++.++.+.. .+. .+.++|+||||+|+|+..+.++|++++|+++..
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~--~~v~~iR~l~~~~~~-~p~----~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASR--TKVEDTRELLDNIPY-APT----KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred HHHHHHhcCCCceEEEEccccc--CCHHHHHHHHHHHhh-ccc----cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 5445555556666777766432 222335665554443 222 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.||++|+++..++++++|||..+.|.+++.+++.+++..++.++|+.++++.+..+++.++|++|.+++.|+.+..-
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAY 227 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877654
No 9
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.5e-38 Score=276.79 Aligned_cols=222 Identities=20% Similarity=0.302 Sum_probs=184.6
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+.+.|.+++..++++| +||+||+|+||||+|+++|+.++|....... .|..|
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~--------pCg~C 75 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST--------PCEVC 75 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC--------CCccC
Confidence 58999999999999999999999999999999998 8999999999999999999999986532111 14444
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++.+.+.+.+.. ....+++.+..... .+. .+.++|+||||+++|+..+.++|++++|+++..
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~--~VddIReli~~~~y-~P~----~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRT--KVEDTRELLDNVPY-APT----QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred HHHHHHhcCCCCceEEecccccC--CHHHHHHHHHHHhh-hhh----cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 44344444455566666654321 23345555554432 222 347899999999999999999999999999988
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.||++|+++..++.+++|||..+.|.+++.+++.+++.+++.++++.++++++..|++.++||+|.++++|+.+...
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIay 226 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAY 226 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876643
No 10
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-38 Score=242.02 Aligned_cols=213 Identities=31% Similarity=0.514 Sum_probs=183.6
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
++|+|||||.-+.|++|++...+.|+-...+|..||++|.||||+||||.+.++|+.+.++....-
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~-------------- 80 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEA-------------- 80 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhH--------------
Confidence 369999999999999999999999999999999999999999999999999999999977553210
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
-++++.++.. +-..++..++.++...-.. ..+..+|+|+||+|.|...+|.++.+++|-++..
T Consensus 81 -------------vLELNASdeR--GIDvVRn~IK~FAQ~kv~l--p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~t 143 (333)
T KOG0991|consen 81 -------------VLELNASDER--GIDVVRNKIKMFAQKKVTL--PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNT 143 (333)
T ss_pred -------------hhhccCcccc--ccHHHHHHHHHHHHhhccC--CCCceeEEEeeccchhhhHHHHHHHHHHHHHccc
Confidence 1445544432 1224677777777654221 2468899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 240 (248)
++|.+++|....+.+++.|||.+++|..+++.++...|..+++.|++++.++.++.++-.++||+|+++|.||.-...-.
T Consensus 144 tRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g 223 (333)
T KOG0991|consen 144 TRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFG 223 (333)
T ss_pred chhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998775444
Q ss_pred cccC
Q 025758 241 RFTM 244 (248)
Q Consensus 241 ~~~~ 244 (248)
.++.
T Consensus 224 ~Vn~ 227 (333)
T KOG0991|consen 224 LVNQ 227 (333)
T ss_pred ccch
Confidence 4443
No 11
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.2e-38 Score=279.03 Aligned_cols=228 Identities=21% Similarity=0.336 Sum_probs=187.3
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+++.|++++..++++| +||+||+|+||||+|+++|+.++|....... + .....|+.|
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~--~-~~~~pCg~C 81 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQG--G-ITATPCGVC 81 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccccc--C-CCCCCCCcc
Confidence 59999999999999999999999999999999999 7999999999999999999999996532110 0 001125555
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+....+++.+.+..... .....+++.++... +.+. .+.++|+||||+|+|+..+.|+|+|++|+++..
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~--~~Vd~iReli~~~~-~~p~----~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~ 154 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASN--RGVDEVQQLLEQAV-YKPV----QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY 154 (618)
T ss_pred HHHHHHHcCCCCceeecCcccc--cCHHHHHHHHHHHH-hCcc----cCCceEEEEEChhhCCHHHHHHHHHhcccCCCC
Confidence 5545555445556566554321 22334666665443 3332 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+.|||+|+++..++.+++|||..+.|.+++.+++.+++.+++.++|+.++++.+.+|++.++||+|.++++++.+...+
T Consensus 155 ~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~ 233 (618)
T PRK14951 155 LKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG 233 (618)
T ss_pred eEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998766433
No 12
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.1e-38 Score=277.98 Aligned_cols=222 Identities=23% Similarity=0.333 Sum_probs=186.6
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+++.|.+.+..++++| +||+||+|+||||+|+++|+.++|...... ..|+.|
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~--------~pCg~C 76 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA--------TPCGEC 76 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC--------CCCCCC
Confidence 58999999999999999999999999999999999 799999999999999999999999632111 125555
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+.....++.+.+...+. .....++++++.+.. .+. .+.++|+||||+|+|+..++|+|+|+||+++..
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~--~~VddiR~li~~~~~-~p~----~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR--TKVEDTRELLDNVQY-APA----RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc--CCHHHHHHHHHHHHh-hhh----cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 5555555555566666655431 223345665555443 222 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
++||++|+++..++++++|||..++|.+++.+++..+|.+++.++++.++++.+..|+..++|++|.++++++.+...
T Consensus 150 v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~ 227 (647)
T PRK07994 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIAS 227 (647)
T ss_pred eEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876543
No 13
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.9e-39 Score=276.56 Aligned_cols=223 Identities=25% Similarity=0.383 Sum_probs=187.8
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
++.||||++|+|++||+.+.+.|+..+..+++.| ++|+||.|+||||+||.+|+.++|........ |..|.
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP--------C~~C~ 77 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP--------CGKCI 77 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc--------chhhh
Confidence 6789999999999999999999999999999999 99999999999999999999999987533333 33333
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~ 161 (248)
.|.+....+..+-+++...+.. .-..++++.+... +.|. .+.++|+||||+++|...+.|+|||++|+|+.++
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~--gVddiR~i~e~v~-y~P~----~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV 150 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNT--GVDDIREIIEKVN-YAPS----EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHV 150 (515)
T ss_pred hhHhhhcCCcccchhhhhhhcc--ChHHHHHHHHHhc-cCCc----cccceEEEEecHHhhhHHHHHHHhcccccCccCe
Confidence 3333333333444555544332 2223455444333 3443 6799999999999999999999999999999999
Q ss_pred eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 240 (248)
+|||+|+++..++.+++|||+.++|...+.+++...|..++.+|++.++++++..+++.++|++|+++++|+++...+.
T Consensus 151 ~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~ 229 (515)
T COG2812 151 KFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE 229 (515)
T ss_pred EEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987654
No 14
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-37 Score=274.47 Aligned_cols=223 Identities=18% Similarity=0.269 Sum_probs=183.1
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
|.|.+||||++|+|++||+.+++.|+.++..++++| +||+||+|+||||+|+++|+.++|........ |+.
T Consensus 1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p--------Cg~ 72 (584)
T PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATP--------CGV 72 (584)
T ss_pred CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCc--------ccc
Confidence 678999999999999999999999999999999999 89999999999999999999999865322111 444
Q ss_pred cccccceeee--cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 80 RNIDLELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
|..|..+... ...+.+.+...+. .....++++.+... +.+. .+.++|+||||+++|...++|+|+++||++
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~--~gvd~iRel~~~~~-~~P~----~~~~KVvIIDEah~Lt~~A~NALLK~LEEp 145 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH--GGVDDTRELRDRAF-YAPA----QSRYRIFIVDEAHMVTTAGFNALLKIVEEP 145 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc--cCHHHHHHHHHHHH-hhhh----cCCceEEEEECCCcCCHHHHHHHHHHHhcC
Confidence 4433333221 2334455544322 12223444443332 2332 457899999999999999999999999999
Q ss_pred cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 158 ~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+..+.||++|+++..++++++|||..+.|.+++.+++.+++..++.++|+.++++++..+++.++|++|.+++.|+.+..
T Consensus 146 p~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 146 PEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred CCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 025758 238 Q 238 (248)
Q Consensus 238 ~ 238 (248)
.
T Consensus 226 ~ 226 (584)
T PRK14952 226 G 226 (584)
T ss_pred c
Confidence 4
No 15
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.1e-37 Score=279.66 Aligned_cols=221 Identities=24% Similarity=0.367 Sum_probs=181.1
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+++.|++++..++++| +||+||+|+||||+|+++|+.++|........ |..|
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~p--------Cg~C 76 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATP--------CGVC 76 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCC--------CCCc
Confidence 68999999999999999999999999999999999 79999999999999999999998864211111 3333
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|.........+.+++..... .....++++++.+.. .+. .+.++|+||||+++|+..++++|+|+||+++..
T Consensus 77 ~sC~~i~~g~~~DviEidAas~--~kVDdIReLie~v~~-~P~----~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASR--TKVDDTRELLDNVQY-RPS----RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred hHHHHHhcCCCceEEEeccccc--cCHHHHHHHHHHHHh-hhh----cCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 3333333333344455544321 222335555555432 222 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
++||++|+++..++++|+|||..++|.+++.+++..+|.+++..+++.++++.+..|+..++|++|.++++++.+..
T Consensus 150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala 226 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIA 226 (944)
T ss_pred eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986553
No 16
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.6e-36 Score=265.20 Aligned_cols=223 Identities=22% Similarity=0.329 Sum_probs=182.7
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
+.|++||||++|++++||+.+.+.|..++..++.+| +||+||+|+||||+|+++++.+.|+....... |..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p--------C~~ 73 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP--------CDT 73 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC--------Ccc
Confidence 469999999999999999999999999999999999 79999999999999999999998876433222 333
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
|..|.......+++.+.+..... .....+++.+.... ..|. .+.++|+||||+++|+..++++|++++|+++.
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~--~gId~IRelie~~~-~~P~----~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASN--RGIDDIRELIEQTK-YKPS----MARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccc--cCHHHHHHHHHHHh-hCcc----cCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 33333333333344444443221 12234555554432 2222 45789999999999999999999999999999
Q ss_pred CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
.+.||++++++..++++++|||..++|.+++.+++..++..++.++|+.++++++..|+..++||+|.+++.|+.++.-
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~ 225 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIY 225 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887754
No 17
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.8e-37 Score=273.10 Aligned_cols=222 Identities=21% Similarity=0.330 Sum_probs=182.6
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|+|++||+.+++.|+.++..++++| +||+||+|+||||+|+++|+.++|+....... |+.|
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~p--------Cg~C 76 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEP--------CGVC 76 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCC--------Cccc
Confidence 58999999999999999999999999999999998 89999999999999999999999876422111 3333
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|.........+.+++..... .....+++++..... .+. .+.++|+||||+++|+..+.+.|++.||+++..
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~--~gVd~IRelle~a~~-~P~----~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASN--TGIDNIREVLENAQY-APT----AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred HHHHHHhccCccceEEEecccc--CCHHHHHHHHHHHHh-hhh----hCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 3333333333344455543321 122345565554332 222 347899999999999999999999999999989
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.|||+|+++..++.+++|||..+.|.+++.+++..+|.+++.++++.++++.+..|++.++||+|.++++|+.+...
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAL 227 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887754
No 18
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.5e-37 Score=268.78 Aligned_cols=223 Identities=22% Similarity=0.339 Sum_probs=186.5
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+++|..++|........ |+.|
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~--------Cg~C 76 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC--------CNSC 76 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------Cccc
Confidence 69999999999999999999999999999999998 99999999999999999999999876433222 4444
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|.......+++.+.+.+.+ ......+++.++.+.. .|. ..+++|+||||+++|+..++++|++++|+++..
T Consensus 77 ~sCr~i~~~~h~DiieIdaas--~igVd~IReIi~~~~~-~P~----~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~ 149 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS--NNGVDEIRNIIDNINY-LPT----TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH 149 (605)
T ss_pred HHHHHHHcCCCCceEEecccc--ccCHHHHHHHHHHHHh-chh----hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCc
Confidence 444444444556666665432 1223345555554443 232 346889999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+.+|++|+++..++++++|||..+.|.+++.+++..++..++.++++.++++++..+++.++|++|.+++.|+.++.-.
T Consensus 150 tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~ 228 (605)
T PRK05896 150 VVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK 228 (605)
T ss_pred EEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876543
No 19
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-36 Score=259.68 Aligned_cols=222 Identities=23% Similarity=0.326 Sum_probs=179.7
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+|++||||++|++++||+.+++.|++.+..++.+| ++|+||+|+||||+|+++|..+.|........ |+.|
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~p--------c~~c 76 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNP--------CRKC 76 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence 58999999999999999999999999999999999 79999999999999999999998864321111 3333
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++...+.+... .....+++.++.+.. .|. .+.++|+||||+++|+..++++|++.+|+++..
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~--~~v~~ir~i~~~~~~-~p~----~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASR--TKVEEMREILDNIYY-SPS----KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred HHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhc-Ccc----cCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 3333333333444455543321 122234444444332 222 457889999999999999999999999999988
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.||++|++...+.++++|||..+.|.+++.+++.+++..++.++++.++++++..++..++||+|.+++.++.++..
T Consensus 150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~ 227 (363)
T PRK14961 150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINL 227 (363)
T ss_pred eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887643
No 20
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.1e-37 Score=280.05 Aligned_cols=222 Identities=19% Similarity=0.291 Sum_probs=181.8
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
|.|.+||||++|++|+||+.+++.|++++..++++| +||+||+|+||||+|++||+.|+|........ |+.
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~p--------Cg~ 74 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTP--------CGE 74 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCC--------Ccc
Confidence 568999999999999999999999999999999999 89999999999999999999999965322111 444
Q ss_pred cccccceeee--cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 80 RNIDLELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
|..|..+... ...+.+.+...+. .....++++.+.+ .+.+. ...++|+||||+|+|+..++|.|+|+||++
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~-~~~p~----~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH--GGVDDARELRERA-FFAPA----ESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHH-Hhchh----cCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 4433333322 2233444433221 1222344433332 22222 458899999999999999999999999999
Q ss_pred cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 158 ~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+..+.|||+|++.+.++++|+|||.++.|.+++.+++.++|.+++.++++.++++.+.+|+..++||+|.+++.|+.++.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia 227 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLA 227 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
No 21
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-36 Score=267.35 Aligned_cols=222 Identities=22% Similarity=0.308 Sum_probs=182.0
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+++.|..++..++++| ++|+||+|+||||+|+.+|..++|........ |+.|
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~p--------Cg~C 76 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEP--------CNKC 76 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC--------Cccc
Confidence 69999999999999999999999999999999999 89999999999999999999998865322111 3333
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|.........+.+++..... .....+++.++.+... +. .+.++|+||||+++|+..++++|++++|+++..
T Consensus 77 ~sC~~i~~~~~~dlieidaas~--~gvd~ir~ii~~~~~~-p~----~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR--TGVEETKEILDNIQYM-PS----QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc--cCHHHHHHHHHHHHhh-hh----cCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 3333333334445555543221 1222345555544432 21 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.||++|++...++++++|||..+.|.+++.+++..++..++.++++.++++.+..|+..++||+|.++++|+.++.-
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~ 227 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISF 227 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987743
No 22
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.7e-36 Score=264.84 Aligned_cols=227 Identities=21% Similarity=0.290 Sum_probs=185.4
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
++|++||||++|+|++||+.+++.|+..+..++++| ++|+||+|+||||+|+++|+.++|.....- + +-...|..
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~---~-~~~~~C~~ 84 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE---N-TTIKTCEQ 84 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc---C-cCcCCCCC
Confidence 479999999999999999999999999999999887 999999999999999999999998652110 0 00011333
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
|..|.......+++.+++.+.+. .....+++.++.... .|. .+.++|+||||+++|+..+.++|++++|+++.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~--~~vd~Ir~iie~a~~-~P~----~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~ 157 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASK--TSVDDIRRIIESAEY-KPL----QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 157 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCC--CCHHHHHHHHHHHHh-ccc----cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence 43333444444556666655322 223345665554432 332 45789999999999999999999999999999
Q ss_pred CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
.+.||++|++...+.++++|||..+.|.+++.+++.+++..++.++++.++++++..|+..++||+|.+++.|+.++..
T Consensus 158 ~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~ 236 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASM 236 (507)
T ss_pred CEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998654
No 23
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-36 Score=271.46 Aligned_cols=222 Identities=21% Similarity=0.353 Sum_probs=185.7
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+++++.|..++..++.+| +||+||+|+||||+|+++|+.++|....... .|+.|
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~--------~c~~c 76 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE--------PCNVC 76 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC--------CCCcc
Confidence 38899999999999999999999999999999999 8999999999999999999999987532211 14455
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+......+.+.+...+. .....++++.+.+.. .|. .+.++|+||||+|+|+..++|+|+++||+++.+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~--~~v~~ir~l~~~~~~-~p~----~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~ 149 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASN--TGVDDIRELRENVKY-LPS----RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH 149 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCc--cCHHHHHHHHHHHHh-ccc----cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC
Confidence 5555555555555565544321 222335555544432 332 458899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.||++|+++..++++++|||..+.|.+++.+++..++..++.++|+.++++.+..++..++||+|.+++.|+.+..-
T Consensus 150 ~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay 227 (576)
T PRK14965 150 VKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAF 227 (576)
T ss_pred eEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887643
No 24
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-36 Score=267.86 Aligned_cols=222 Identities=22% Similarity=0.363 Sum_probs=183.5
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+++.|..++..++++| ++|+||+|+||||+|+++|+.++|....... .|+.|
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~--------pcg~C 76 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTAT--------PCGVC 76 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCCC
Confidence 48999999999999999999999999999999999 8999999999999999999999986532111 14444
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++.+++.... ......+++.+.... +.|. .+.++|+||||+|+|+..+.|+|+|++|+++..
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~--~~~vd~ir~l~~~~~-~~p~----~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS--NTQVDAMRELLDNAQ-YAPT----RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc--cCCHHHHHHHHHHHh-hCcc----cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 333333333444555554432 122334555555443 3332 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.||++|+++..++++++|||..+.|.+++.+++.+++.+++.++|+.++++.+..|++.++|++|.++++++.+...
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~ 227 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAY 227 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877654
No 25
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.7e-36 Score=267.65 Aligned_cols=227 Identities=21% Similarity=0.312 Sum_probs=188.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+++.|..++..++++| +||+||+|+||||+|+++|+.++|...... .+ +....|+.|
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~--~~-~~~~~cg~c 89 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD--GG-PTIDLCGVG 89 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc--CC-CccccCccc
Confidence 58999999999999999999999999999999998 999999999999999999999998753111 00 001124444
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+....+++.+.+.+.+. .....++++++.+. +.+. ...++|+||||+++|+..+.++|++++|+++..
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~--~gvd~IReIie~~~-~~P~----~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~ 162 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASH--TGVDDIREIIESVR-YRPV----SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 162 (598)
T ss_pred HHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHH-hchh----cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC
Confidence 4444455555666667665432 23344666665443 3332 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.|||++++...++++++|||..+.|.+++.+++..++.+++.++++.++++.++.|+..++|++|.+++.|+.+...
T Consensus 163 ~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~ 240 (598)
T PRK09111 163 VKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAH 240 (598)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887654
No 26
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4e-36 Score=265.43 Aligned_cols=221 Identities=19% Similarity=0.293 Sum_probs=179.8
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+|++||||++|+|++||+.+++.|++++..++++| +||+||+|+||||+|+++|+.++|........ |..|
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~p--------Cg~C 76 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEP--------CNTC 76 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCC--------Cccc
Confidence 69999999999999999999999999999999777 99999999999999999999999864321111 3344
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+....+++.+.+..... .....++++.+.+. +.+. .+.++|+||||+|+|+..+++.|++.+|+++..
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~--~~Id~iR~L~~~~~-~~p~----~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN--RGIDDAKRLKEAIG-YAPM----EGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc--cCHHHHHHHHHHHH-hhhh----cCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 3333344444455555543221 12223444333332 2222 457889999999999999999999999999888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.||++|+++..+.++++|||..+.|.+++.+++..+|..++.++++.+++++++.|++.++||+|.++++|+.+..
T Consensus 150 ~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred EEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987653
No 27
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.6e-35 Score=265.11 Aligned_cols=218 Identities=26% Similarity=0.385 Sum_probs=178.7
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccc-eecccceeeccC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKV-KVENKTWKIDAG 78 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~-~~~~~~~~~~~~ 78 (248)
+.|++||||++|++++||+.+++.|+.++..++++| +||+||+|+||||+|+++|+.++|...+.. .. |+
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p--------C~ 77 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP--------CQ 77 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc--------hh
Confidence 479999999999999999999999999999999999 899999999999999999999998753210 11 22
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~ 158 (248)
.|. .| ....++.+.+.+. +......++++++.+.. .|. .+.++|+||||+++|...+.++|+++||+|+
T Consensus 78 ~C~---~~-~~~~~Dvieidaa--sn~~vd~IReLie~~~~-~P~----~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP 146 (725)
T PRK07133 78 ECI---EN-VNNSLDIIEMDAA--SNNGVDEIRELIENVKN-LPT----QSKYKIYIIDEVHMLSKSAFNALLKTLEEPP 146 (725)
T ss_pred HHH---Hh-hcCCCcEEEEecc--ccCCHHHHHHHHHHHHh-chh----cCCCEEEEEEChhhCCHHHHHHHHHHhhcCC
Confidence 221 12 1122333333321 11223335665555443 232 4688999999999999999999999999999
Q ss_pred CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
..+.||++|+++..++++++|||..+.|.+++.+++..+|..++.++|+.++++++..++..++|++|.+++.++.+..
T Consensus 147 ~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~ 225 (725)
T PRK07133 147 KHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSI 225 (725)
T ss_pred CceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998764
No 28
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.4e-35 Score=261.37 Aligned_cols=221 Identities=23% Similarity=0.369 Sum_probs=185.8
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+.+.|++++..++.+| +||+||+|+|||++|+.+|+.++|+...... .|..|
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~--------pC~~C 76 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE--------PCNEC 76 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCcc
Confidence 38899999999999999999999999999999999 8999999999999999999999997643211 14445
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++.+.+.+... .....++++.+.+. +.|. .+.++|+||||+++|...+.++|++++|+++..
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~--~~vd~ir~i~~~v~-~~p~----~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~ 149 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASN--NGVDEIRDIRDKVK-YAPS----EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAH 149 (559)
T ss_pred HHHHHHhcCCCCCeEEeecccc--CCHHHHHHHHHHHh-hCcc----cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCC
Confidence 4444555555666666655321 12223455444433 3333 568999999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.||++|+++..++++++|||..+.|.+++.+++..++..++.++|+.++++++..++..++|++|.+++.|+.+..
T Consensus 150 ~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 150 VIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAIS 226 (559)
T ss_pred eEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987764
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.2e-35 Score=256.02 Aligned_cols=226 Identities=23% Similarity=0.296 Sum_probs=184.9
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
+++||||++|+|++||+.+++.|+.++..++.+| ++|+||+|+||||+|+++|..+.|..... .. |+.|.
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~-~~--------cg~C~ 74 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP-KP--------CGECE 74 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC-CC--------CCcCh
Confidence 4599999999999999999999999999999999 69999999999999999999998854211 11 44444
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~ 161 (248)
.|.......+++.+.+.+... .....++++...+.. .+. .+.++|+||||+|.++..+.+.|++.+++++..+
T Consensus 75 sc~~i~~~~h~dv~el~~~~~--~~vd~iR~l~~~~~~-~p~----~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t 147 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASN--NSVEDVRDLREKVLL-APL----RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHV 147 (504)
T ss_pred hhHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhh-ccc----cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCE
Confidence 434444445566666665421 223334554333332 222 3578899999999999999999999999998888
Q ss_pred eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhccc
Q 025758 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~ 241 (248)
.||++++++..+.++++|||..+.|.+++.+++.+++..++.++|+.++++++..|++.++||+|.+++.|+.+...+..
T Consensus 148 ~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~ 227 (504)
T PRK14963 148 IFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTP 227 (504)
T ss_pred EEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765444
Q ss_pred ccC
Q 025758 242 FTM 244 (248)
Q Consensus 242 ~~~ 244 (248)
++.
T Consensus 228 It~ 230 (504)
T PRK14963 228 VTR 230 (504)
T ss_pred CCH
Confidence 443
No 30
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.6e-35 Score=254.41 Aligned_cols=222 Identities=23% Similarity=0.372 Sum_probs=178.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+++.+.|...+..++++| ++|+||||+||||+|+++|..+.|........ |..|
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p--------c~~c 74 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP--------CNEC 74 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC--------Cccc
Confidence 58999999999999999999999999999999988 89999999999999999999998765322222 2222
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++.+.+.+... .....+++.... ....+. .+.++|+||||+++|+..+++.|++.+++++..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~--~gid~iR~i~~~-~~~~p~----~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASN--RGIDEIRKIRDA-VGYRPM----EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred HHHHHHhcCCCCccEEEeCccc--CCHHHHHHHHHH-HhhChh----cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 2222222233344455554321 111234443332 222332 347889999999999999999999999999888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.+|++++++..+.++++|||..+.|.+++.+++..++..++..+++.+++++++.|++.++||+|.+++.|+.+...
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~ 225 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKF 225 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 899999998889999999999999999999999999999999999999999999999999999999999999987653
No 31
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.4e-35 Score=254.08 Aligned_cols=223 Identities=26% Similarity=0.380 Sum_probs=180.3
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+|++||||++|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+++|..++|....... .|+.|
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~--------pc~~c 76 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGE--------PCGKC 76 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCC--------CCCcc
Confidence 79999999999999999999999999999999999 8899999999999999999999885432211 13333
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++.+.+..... .....+++..+. ....|. .+.++|+||||+++|+..+.++|++++++++..
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~--~gvd~ir~I~~~-~~~~P~----~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASN--RGIDDIRALRDA-VSYTPI----KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccC--CCHHHHHHHHHH-HHhCcc----cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 2222333333444455533221 112223443333 333333 457899999999999999999999999999888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+.||+++++...++++++|||..+.|.+++.+++..++..++.++|+.++++++..++..++||+|.+++.|+.+...+
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~ 228 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG 228 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 9999999998899999999999999999999999999999999999999999999999999999999999999886543
No 32
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-34 Score=259.15 Aligned_cols=224 Identities=24% Similarity=0.347 Sum_probs=183.9
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+|.+||||++|++++||+.+++.|..++..++..| +||+||+|+||||+|+++|+.++|......... .|+.|
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~------~Cg~C 78 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE------PCGKC 78 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC------CCccc
Confidence 69999999999999999999999999999988766 999999999999999999999998643211111 14444
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+....+++.+++.... ......+++.+.... ..+. .+.++|+||||+|+|+..+.++|++++|+++..
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~--~~~vd~IReii~~a~-~~p~----~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAAS--NTGVDNIRELIERAQ-FAPV----QARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred HHHHHHhcCCCccEEEEeccc--cCCHHHHHHHHHHHh-hChh----cCCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 443444444555555554432 122334566665443 3332 457899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.||++|+++..++++++|||..+.|.+++.+++..++.+++.++++.++++.+..+++.++|++|.+++.|+.+...
T Consensus 152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~ 229 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLL 229 (620)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987543
No 33
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-34 Score=248.20 Aligned_cols=229 Identities=19% Similarity=0.259 Sum_probs=183.5
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
..++||||++|++++||+.+++.|++++.+++++| ++|+||+|+||||+|+++|+.++|+....-.-........|+.|
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 46899999999999999999999999999999999 99999999999999999999999964211000000001125555
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+.....++...+..... .....+++....+. ..|. .++++|+||||++.|+..+++.|++.+|+++..
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~--~~id~Ir~l~~~~~-~~p~----~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~ 157 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASN--NSVDDIRLLRENVR-YGPQ----KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH 157 (397)
T ss_pred HHHHHHhcCCCCCeEeeccccc--CCHHHHHHHHHHHh-hchh----cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC
Confidence 5555555555555555543221 22233444444443 2232 457899999999999999999999999999888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.||+++++...+.++++|||..+.|.+++.+++.+++..++.++++.+++++++.++..++||+|.+++.|+.+..
T Consensus 158 t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 158 AIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIA 234 (397)
T ss_pred eEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999998754
No 34
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3e-34 Score=256.99 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=185.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|++++||+.+.+.|..++..++++| +||+||+|+||||+|+++|..+.|...+. . ...|+.|
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~---~----~~~Cg~C 78 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA---D----GEACNEC 78 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC---C----CCCCCcc
Confidence 59999999999999999999999999999999999 99999999999999999999998865321 0 0125555
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+......+...+.+.+ ......+++.++.+.. .|. .++++|+||||++.|+..++++|+++||+++..
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~--~~~vd~Ir~li~~~~~-~P~----~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS--NNSVDDIRNLIEQVRI-PPQ----IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred hHHHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHhh-Ccc----cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 544555544455555665432 1223345555544432 332 458899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.||+++++...+.++++|||.++.|.+++.+++..++..++.++|+.++++++..|+..++||+|.+++.|+.++.
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~ 228 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVS 228 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988653
No 35
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.4e-34 Score=255.48 Aligned_cols=229 Identities=20% Similarity=0.281 Sum_probs=184.7
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.++||||++|++++||+.+++.|++++..++++| +||+||+|+||||+|+++|+.++|.....-..........|+.|.
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 5789999999999999999999999999999999 999999999999999999999999642110000000011255555
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~ 161 (248)
.|..+......+...+.... ......+++.++.+.. .|. .++++|+||||++.|+..++++|++++|+++..+
T Consensus 86 sC~~~~~g~~~n~~~~d~~s--~~~vd~Ir~l~e~~~~-~P~----~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t 158 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAAS--NNSVDDIRQLRENVRY-GPQ----KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA 158 (620)
T ss_pred HHHHHhccCCCCeEEecccc--cCCHHHHHHHHHHHHh-hhh----cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence 55555566666655554322 1222335554444432 232 4578999999999999999999999999999989
Q ss_pred eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
.||+++++...+.++++|||.++.|.+++.+++..++..++.++|+.+++++++.++..++||+|.+++.|+.+..-
T Consensus 159 v~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y 235 (620)
T PRK14954 159 IFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAF 235 (620)
T ss_pred EEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999977653
No 36
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.2e-34 Score=247.52 Aligned_cols=221 Identities=23% Similarity=0.352 Sum_probs=177.9
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCccc-ceecccceeeccCC
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGS 79 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~-~~~~~~~~~~~~~~ 79 (248)
.|++||||++|+|++||+.+++.|..++..++.+| +||+||+|+||||+|+++|+.+.|+.... ... |+.
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~--------c~~ 77 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP--------CNQ 77 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC--------Ccc
Confidence 48999999999999999999999999999999988 99999999999999999999998864321 111 333
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
|..|..+......+.+.+.... ......++++...+.. .+. .++++|+||||+|.|...+++.|++.+|+++.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~--~~gid~ir~i~~~l~~-~~~----~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGAS--HRGIEDIRQINETVLF-TPS----KSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccc--cCCHHHHHHHHHHHHh-hhh----cCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 3332333333334445554321 1112234443333322 221 35789999999999999999999999999988
Q ss_pred CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
.+.||+++++...+.++++|||..+.|++++.+++.+++..++.++|+.++++++..|+..++||+|.+++.++.+..
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVG 228 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999998763
No 37
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.4e-34 Score=251.60 Aligned_cols=221 Identities=20% Similarity=0.274 Sum_probs=180.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++||||++|+|++||+.+++.|+.++..++.+| ++|+||+|+||||+|+++|+.++|........ |..|
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p--------C~~C 76 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP--------CGEC 76 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC--------Cccc
Confidence 47899999999999999999999999999999999 99999999999999999999998865332211 4444
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|.........+.+.+.... ......+++..+.+. ..|. .++++|+||||+++|+..+.++|++.+|+++..
T Consensus 77 ~~C~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~-~~p~----~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~ 149 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIM-FPPA----SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPY 149 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHH-hchh----cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCC
Confidence 433333333344444443321 111223444333332 2332 458899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.||++++++..+.++++|||..+.|.+++.+++.+++..++.++++.++++++..|+..++||+|.+++.|+.+..
T Consensus 150 ~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis 226 (563)
T PRK06647 150 IVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVS 226 (563)
T ss_pred EEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987754
No 38
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=1.8e-33 Score=238.52 Aligned_cols=233 Identities=31% Similarity=0.549 Sum_probs=174.0
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc--cceecccceeeccC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAG 78 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~--~~~~~~~~~~~~~~ 78 (248)
|+|++||||++|++++|++.+++.|..++..++.++++|+||+||||||+|++++..+.+...+ .+.++...+.
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~---- 78 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF---- 78 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh----
Confidence 8999999999999999999999999999999888899999999999999999999988664311 1122211110
Q ss_pred CcccccceeeecccceeeeCCC--CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758 79 SRNIDLELTTLSSANHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~ 156 (248)
... .......+.+..+... ..+.......++.++......+. ...+++++|||++.++...++.|+++++.
T Consensus 79 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vlilDe~~~l~~~~~~~L~~~le~ 151 (337)
T PRK12402 79 --DQG-KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL----SADYKTILLDNAEALREDAQQALRRIMEQ 151 (337)
T ss_pred --hcc-hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC----CCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence 000 0000000000000000 00111112233333333333332 34678999999999999999999999998
Q ss_pred hcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 157 ~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 236 (248)
++..+.+|++++++..+.+++++||..+.|.+++.+++..++..++.++++.+++++++.+++.++||+|.+++.|+.++
T Consensus 152 ~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA 231 (337)
T ss_pred ccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88778899999988889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhcccccC
Q 025758 237 VQQLRFTM 244 (248)
Q Consensus 237 ~~~~~~~~ 244 (248)
.....++.
T Consensus 232 ~~~~~It~ 239 (337)
T PRK12402 232 LAAGEITM 239 (337)
T ss_pred HcCCCCCH
Confidence 54444543
No 39
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=4.1e-33 Score=237.92 Aligned_cols=223 Identities=25% Similarity=0.375 Sum_probs=180.9
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+|+|||||++|++++|++.+++.|..++..++.+| ++|+||+|+|||++|+.+++.+.|+....... |..|
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~--------c~~c 74 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP--------CNEC 74 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence 69999999999999999999999999999999988 89999999999999999999998874322111 3333
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++.+.+.+... .....+++.++.+.. .|. .++++|++|||+|.+...+.+.|++.+++++..
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~p~----~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASN--NGVDDIREILDNVKY-APS----SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred HHHHHHhcCCCCCEEEeecccc--CCHHHHHHHHHHHhc-Ccc----cCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 3333333334444555544321 122234455554432 222 457889999999999999999999999998888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+.+|++++++..+.++++|||..+.|++|+.+++.+++..++.++|+.++++++..+++.++||+|.+.+.++.+...+
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~ 226 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFG 226 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Confidence 8899999998889999999999999999999999999999999999999999999999999999999999998877543
No 40
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.1e-33 Score=248.21 Aligned_cols=220 Identities=24% Similarity=0.360 Sum_probs=179.3
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCc-ccceecccceeeccCCc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA-EKVKVENKTWKIDAGSR 80 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~-~~~~~~~~~~~~~~~~~ 80 (248)
|.+||||++|++++||+.+++.|..++..++.+| +||+||+|+||||+|+++|+.++|... ..... |+.|
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~--------c~~c 77 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP--------CGTC 77 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------CccC
Confidence 8899999999999999999999999999999988 899999999999999999999988653 11111 3333
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+....+.+.+.+.+.. ......++++++.+. ..+. ...++|+||||+++|+..+.+.|++.+|+++..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~--~~~vd~ir~ii~~~~-~~p~----~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~ 150 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAAS--HTSVDDAREIIERVQ-FRPA----LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 150 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccc--cCCHHHHHHHHHHHh-hCcc----cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC
Confidence 333333333344445554421 122233455444333 2222 457899999999999999999999999999888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
+.||+++++...+.++++|||..+.|.+++..++..++.+++.++++.++++++..|+..++||+|.+++.|+.+..
T Consensus 151 tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 151 AIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLAT 227 (585)
T ss_pred eEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=1.8e-32 Score=230.73 Aligned_cols=212 Identities=39% Similarity=0.694 Sum_probs=173.9
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
+|+|||||++|++++|++++++.+..++..+..++++|+||+|+||||+++.+++.+.++....
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~---------------- 69 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRE---------------- 69 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc----------------
Confidence 6999999999999999999999999999998888999999999999999999999885543110
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~ 161 (248)
..+.+...+.. ......+.+..+....+. ....+++++|||++.+....++.|++.++.++..+
T Consensus 70 -----------~~i~~~~~~~~--~~~~~~~~i~~~~~~~~~---~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~ 133 (319)
T PRK00440 70 -----------NFLELNASDER--GIDVIRNKIKEFARTAPV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNT 133 (319)
T ss_pred -----------ceEEecccccc--chHHHHHHHHHHHhcCCC---CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCC
Confidence 01223222211 111233444444443332 13467899999999999989999999999988888
Q ss_pred eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhccc
Q 025758 162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~ 241 (248)
.+|++++....+.+++++||..+.|++++.+++..++..++.++++.+++++++.+++.++||+|.+++.|+.++..+..
T Consensus 134 ~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~ 213 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE 213 (319)
T ss_pred eEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876544
Q ss_pred ccCC
Q 025758 242 FTMP 245 (248)
Q Consensus 242 ~~~~ 245 (248)
++.+
T Consensus 214 it~~ 217 (319)
T PRK00440 214 VTEE 217 (319)
T ss_pred CCHH
Confidence 4443
No 42
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.4e-32 Score=230.91 Aligned_cols=210 Identities=28% Similarity=0.424 Sum_probs=170.8
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
|.|++||||++|++++||+.+.+.+..+++.++.++ ++|+||+|+||||+|+.++..+.|+....- +..+.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~---~~~~~----- 76 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDP---NEDFS----- 76 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCCC-----
Confidence 689999999999999999999999999999998886 999999999999999999998877432100 00000
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
...+.+.. ........+.+.++.+.. .|. .+++++++|||++.+...+.+.|++.+++++.
T Consensus 77 ------------~~~~~l~~--~~~~~~~~i~~l~~~~~~-~p~----~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~ 137 (367)
T PRK14970 77 ------------FNIFELDA--ASNNSVDDIRNLIDQVRI-PPQ----TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPA 137 (367)
T ss_pred ------------cceEEecc--ccCCCHHHHHHHHHHHhh-ccc----cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCC
Confidence 00112211 111122334454544332 222 45788999999999999999999999999888
Q ss_pred CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
.+.+|+++++...+.++++|||.++.|.+++.+++..++...+.++|+.+++++++.++..++||+|.+++.|+.++.
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~ 215 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVT 215 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999998874
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=4.5e-32 Score=239.13 Aligned_cols=203 Identities=30% Similarity=0.449 Sum_probs=160.1
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhc---CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~---~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
|+|+|||||+++++++|++.+++.|..|+.. |+ .++++|+||||+||||+|+++|..+..+
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~--------------- 66 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWE--------------- 66 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---------------
Confidence 8999999999999999999999999999864 33 4459999999999999999999976211
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH----HHHHHHHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----EAQHSLRR 152 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----~~~~~ll~ 152 (248)
.+.+.+.+.. ....+...+.......+. ....++||||||+|.|.. .+.+.|++
T Consensus 67 -----------------~ielnasd~r--~~~~i~~~i~~~~~~~sl---~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~ 124 (482)
T PRK04195 67 -----------------VIELNASDQR--TADVIERVAGEAATSGSL---FGARRKLILLDEVDGIHGNEDRGGARAILE 124 (482)
T ss_pred -----------------EEEEcccccc--cHHHHHHHHHHhhccCcc---cCCCCeEEEEecCcccccccchhHHHHHHH
Confidence 1333332221 112233333333332221 113678999999999865 56788999
Q ss_pred HHHHhcCCeeEEEEecCCCcccH-HHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHH
Q 025758 153 TMEKYSASCRLILCCNSSSKVTE-AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231 (248)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~~~~~-~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~ 231 (248)
+++. ....+|+++|++..+.. ++++||..+.|++|+.+++..++..++.++++.+++++++.|++.++||+|.+++.
T Consensus 125 ~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 125 LIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred HHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9884 34679999999988776 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccc
Q 025758 232 FETCRVQQLRF 242 (248)
Q Consensus 232 l~~~~~~~~~~ 242 (248)
|+.++.....+
T Consensus 203 Lq~~a~~~~~i 213 (482)
T PRK04195 203 LQAIAEGYGKL 213 (482)
T ss_pred HHHHhcCCCCC
Confidence 99966543333
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-31 Score=220.59 Aligned_cols=197 Identities=27% Similarity=0.409 Sum_probs=158.6
Q ss_pred CCccccCCCCCcccccccHHHH---HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~---~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~ 77 (248)
|++++++||++++|++||++++ +.|.+.++.+++++++|+||||+||||+|++||+...+.
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~---------------- 75 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA---------------- 75 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc----------------
Confidence 6889999999999999999998 488999999999999999999999999999999965221
Q ss_pred CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
+..++.-..++.+ +++.++....... .+...|+||||+++++...|..|+..+|.
T Consensus 76 ----------------f~~~sAv~~gvkd---lr~i~e~a~~~~~-----~gr~tiLflDEIHRfnK~QQD~lLp~vE~- 130 (436)
T COG2256 76 ----------------FEALSAVTSGVKD---LREIIEEARKNRL-----LGRRTILFLDEIHRFNKAQQDALLPHVEN- 130 (436)
T ss_pred ----------------eEEeccccccHHH---HHHHHHHHHHHHh-----cCCceEEEEehhhhcChhhhhhhhhhhcC-
Confidence 1344444444443 5555554433221 23567999999999999999999999995
Q ss_pred cCCeeEEEE--ec-CCC-cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH--cCCC-----CCHHHHHHHHHHccccHH
Q 025758 158 SASCRLILC--CN-SSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK--EGLQ-----LPSGFATRLAEKSNRSLR 226 (248)
Q Consensus 158 ~~~~~~Il~--t~-~~~-~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~--~~~~-----~~~~~~~~l~~~~~g~~r 226 (248)
+.+||+ |+ +|. .+.++|+|||+++.|.+++.+++..++++.+.. +++. ++++++++++..++||+|
T Consensus 131 ---G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 131 ---GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred ---CeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 344444 33 333 799999999999999999999999999994443 4554 789999999999999999
Q ss_pred HHHHHHHHHhhhccc
Q 025758 227 RAILSFETCRVQQLR 241 (248)
Q Consensus 227 ~~~~~l~~~~~~~~~ 241 (248)
.++|+|+.+......
T Consensus 208 ~aLN~LE~~~~~~~~ 222 (436)
T COG2256 208 RALNLLELAALSAEP 222 (436)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999876653
No 45
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.97 E-value=2e-30 Score=218.01 Aligned_cols=198 Identities=30% Similarity=0.493 Sum_probs=157.4
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
.+|+|||||++|++++|++++.+.+..+++.++.++ ++|+||+|+||||+|++++..+.. .
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-~----------------- 70 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-E----------------- 70 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-c-----------------
Confidence 379999999999999999999999999999999888 666999999999999999986521 1
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC-CHHHHHHHHHHHHHhc
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTMEKYS 158 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~~~~~~~ll~~le~~~ 158 (248)
...+.+.. +. ...+.+.+..+....+. ...+++++|||+|.+ ...+++.|..++++++
T Consensus 71 --------------~~~i~~~~-~~--~~~i~~~l~~~~~~~~~----~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~ 129 (316)
T PHA02544 71 --------------VLFVNGSD-CR--IDFVRNRLTRFASTVSL----TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS 129 (316)
T ss_pred --------------ceEeccCc-cc--HHHHHHHHHHHHHhhcc----cCCCeEEEEECcccccCHHHHHHHHHHHHhcC
Confidence 02223322 11 11223333333332221 236789999999999 6667788888899988
Q ss_pred CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHccccHHHHHHH
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE-------FIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~-------~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~ 231 (248)
.++.||+++|....+.++++|||..+.|+.|+.++...++. .++.++++.++++++..+++...||.|.+++.
T Consensus 130 ~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~ 209 (316)
T PHA02544 130 KNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINE 209 (316)
T ss_pred CCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 88899999999999999999999999999999888765543 34556799999999999999999999999999
Q ss_pred HHHHhh
Q 025758 232 FETCRV 237 (248)
Q Consensus 232 l~~~~~ 237 (248)
++.+..
T Consensus 210 l~~~~~ 215 (316)
T PHA02544 210 LQRYAS 215 (316)
T ss_pred HHHHHc
Confidence 997764
No 46
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=3.5e-30 Score=216.98 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=168.3
Q ss_pred cCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 6 ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
..+|..+++++||+.+.+.|...+..|+.+| ++|+||+|+||||+|+.+|+.+.|.........+ ....|+.|..|.
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~--~~~~~~~c~~c~ 93 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET--LADPDPASPVWR 93 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc--cCCCCCCCHHHH
Confidence 4789999999999999999999999999999 9999999999999999999999985421111000 011122333333
Q ss_pred ceeeecccceeeeCCC-Cc--C----cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 85 ELTTLSSANHVELSPS-DA--G----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~-~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
.+....+++...+..+ +. + ......+++..+.+... + ..++++|+||||+|.|+.++.|+|+|++|++
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~----~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-S----GDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-c----ccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 3344455555444321 11 1 11223344434333322 2 2568899999999999999999999999999
Q ss_pred cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHH
Q 025758 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (248)
Q Consensus 158 ~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 235 (248)
+.++.||++++.+..++++++|||..++|++++.+++.++|.......+ ++++++..++..++|++|.++++++..
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~~ 244 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNYG 244 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999997544333 678999999999999999999998543
No 47
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=3.7e-29 Score=211.85 Aligned_cols=219 Identities=20% Similarity=0.275 Sum_probs=167.4
Q ss_pred CCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecc--cceeeccCCcccc
Q 025758 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN--KTWKIDAGSRNID 83 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~--~~~~~~~~~~~~~ 83 (248)
.+|.++++++||+.+++.|.+.+..++++| +||+||+|+||+++|+.+|+.++|+.......++ ..--..|+.|..|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 699999999999999999999999999999 9999999999999999999999997632111100 0000113344444
Q ss_pred cceeeecccceeeeCCC--CcC-----cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758 84 LELTTLSSANHVELSPS--DAG-----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~ 156 (248)
..+....+++...+.+. +.+ ......++++...+. ..+ ..++++|+||||+|.|+..+.|+|+|++|+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~-~~~----~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFG-LTA----AEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhC-cCc----ccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 44555667776666542 211 112223444333332 222 256899999999999999999999999999
Q ss_pred hcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (248)
Q Consensus 157 ~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 234 (248)
++.++.||++|+++..++++++|||..+.|++++.+++.++|.... ...+++.+..++..++|+++.++++++.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~~ 241 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAGG 241 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999997532 2344555678899999999999988853
No 48
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.97 E-value=3.9e-30 Score=206.22 Aligned_cols=212 Identities=31% Similarity=0.453 Sum_probs=175.6
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
|+|+|||||.++.+++++++.+..+.++...++.||+||+||||+|||++..+.|..+.++.....
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~-------------- 94 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTS-------------- 94 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchh--------------
Confidence 789999999999999999999999999999999999999999999999999999998866421100
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCC-CCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK-GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
...++..++.. +-..+++.+..++........ .....+++|+||+|.|..++||+|.+.++.+..
T Consensus 95 ------------m~lelnaSd~r--gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~ 160 (360)
T KOG0990|consen 95 ------------MLLELNASDDR--GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTA 160 (360)
T ss_pred ------------HHHHhhccCcc--CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhcc
Confidence 00222222211 111244445555543322111 123788999999999999999999999999999
Q ss_pred CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
++.|++++|++..+.++++|||..++|.+.+..+...++..+++.+....+++....++..+-||+|.++|.|+.....-
T Consensus 161 n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 161 NTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKV 240 (360)
T ss_pred ceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887544
Q ss_pred c
Q 025758 240 L 240 (248)
Q Consensus 240 ~ 240 (248)
.
T Consensus 241 ~ 241 (360)
T KOG0990|consen 241 M 241 (360)
T ss_pred C
Confidence 3
No 49
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=4.6e-29 Score=212.87 Aligned_cols=202 Identities=22% Similarity=0.371 Sum_probs=161.8
Q ss_pred CcccccccHHHHHHHHHHhhcCC---------CCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 11 TLDQVIVHQDIAQNLKKLVTEQD---------CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~~~---------~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.|++++||+.+++.|++++..++ .+| ++|+||+|+|||++|+.+|+.++|..... ..|+.|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~---------~~Cg~C 73 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDE---------PGCGEC 73 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCC---------CCCCCC
Confidence 47899999999999999998876 778 99999999999999999999999976421 115555
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|..+....+++...+.++.. ......++++++.+.. .+. .+.++|+||||+|.|++.++|.|+|++|+++.+
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~-~i~i~~iR~l~~~~~~-~p~----~~~~kViiIDead~m~~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGL-SIGVDEVRELVTIAAR-RPS----TGRWRIVVIEDADRLTERAANALLKAVEEPPPR 147 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccc-cCCHHHHHHHHHHHHh-Ccc----cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC
Confidence 5545555555666555555432 2233345666655543 332 458899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 232 (248)
+.||++|+++..++++++|||..+.|++|+.+++.++|.. +.+ ++++.+..++..++|+++.++.++
T Consensus 148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999999999999999999999999999998873 224 568888999999999998887665
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=9.7e-30 Score=197.25 Aligned_cols=190 Identities=24% Similarity=0.343 Sum_probs=133.7
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhh-----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~-----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
.+.+++||++|+|++||++++..++-+++ +..++|++|+||||+||||+|+.+|.++...-
T Consensus 13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~-------------- 78 (233)
T PF05496_consen 13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF-------------- 78 (233)
T ss_dssp -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E--------------
T ss_pred hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe--------------
Confidence 46789999999999999999998876553 24577899999999999999999999763211
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~ 156 (248)
...+.. ...........+ .. .+...|+||||++++++..+..|+..+|+
T Consensus 79 ------------------~~~sg~--~i~k~~dl~~il---~~--------l~~~~ILFIDEIHRlnk~~qe~LlpamEd 127 (233)
T PF05496_consen 79 ------------------KITSGP--AIEKAGDLAAIL---TN--------LKEGDILFIDEIHRLNKAQQEILLPAMED 127 (233)
T ss_dssp ------------------EEEECC--C--SCHHHHHHH---HT----------TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred ------------------Eeccch--hhhhHHHHHHHH---Hh--------cCCCcEEEEechhhccHHHHHHHHHHhcc
Confidence 011110 011111122222 22 12456999999999999999999999997
Q ss_pred hcC------------------CeeEEEEecCCCcccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758 157 YSA------------------SCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (248)
Q Consensus 157 ~~~------------------~~~~Il~t~~~~~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l 217 (248)
..- .-++|-+|+....+..++++|+- +.++..|+.+++.+|+.+-+...++.++++...+|
T Consensus 128 ~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~I 207 (233)
T PF05496_consen 128 GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEI 207 (233)
T ss_dssp SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHH
T ss_pred CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 531 01267778888899999999995 56899999999999999888888999999999999
Q ss_pred HHHccccHHHHHHHHHHHh
Q 025758 218 AEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 218 ~~~~~g~~r~~~~~l~~~~ 236 (248)
+.++.|++|-|.++|....
T Consensus 208 a~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 208 ARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp HHCTTTSHHHHHHHHHHHC
T ss_pred HHhcCCChHHHHHHHHHHH
Confidence 9999999999999998765
No 51
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.1e-28 Score=203.57 Aligned_cols=203 Identities=20% Similarity=0.261 Sum_probs=154.3
Q ss_pred CcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758 11 TLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (248)
.|++++||+.+++.|...+..++++| +||+||.|+||+++|+.+|..++|... |+.|..|. ....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~-------------c~~c~~~~-~~~~ 67 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGS-------------PSKNIRRR-LEEG 67 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-------------CCCcHhcc-cccC
Confidence 58899999999999999999999888 999999999999999999999998762 21111111 2222
Q ss_pred cccceeeeCCCC----c-----------------CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHH
Q 025758 90 SSANHVELSPSD----A-----------------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQH 148 (248)
Q Consensus 90 ~~~~~~~~~~~~----~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~ 148 (248)
.+++...+.|.. . .......++++.+. ....|. .++++|+|||++|.|+..+.|
T Consensus 68 ~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~-l~~~p~----~~~~kVvII~~ae~m~~~aaN 142 (314)
T PRK07399 68 NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRF-LSRPPL----EAPRKVVVIEDAETMNEAAAN 142 (314)
T ss_pred CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHH-HccCcc----cCCceEEEEEchhhcCHHHHH
Confidence 334433333311 0 01111233443332 333333 568999999999999999999
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHH
Q 025758 149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (248)
Q Consensus 149 ~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~ 228 (248)
+|+|++|+|+ ++.|||+|++++.++++++|||..++|++++.+++.++|......++.. .....++..++|+++.+
T Consensus 143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~a 218 (314)
T PRK07399 143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAA 218 (314)
T ss_pred HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHH
Confidence 9999999999 7899999999999999999999999999999999999999765433322 23578889999999999
Q ss_pred HHHHHHHh
Q 025758 229 ILSFETCR 236 (248)
Q Consensus 229 ~~~l~~~~ 236 (248)
++.++...
T Consensus 219 l~~l~~~~ 226 (314)
T PRK07399 219 IANIEQLQ 226 (314)
T ss_pred HHHHHHHH
Confidence 99887543
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.96 E-value=8.8e-29 Score=214.44 Aligned_cols=195 Identities=26% Similarity=0.404 Sum_probs=151.8
Q ss_pred CccccCCCCCcccccccHHHHHH---HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~---l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+|++||||++|++++||++++.. |.+++..+..++++|+||+|+||||+|+.++..+...
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~----------------- 63 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP----------------- 63 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----------------
Confidence 69999999999999999999766 9999998888889999999999999999999865211
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~ 158 (248)
++.+.....+. ..+++.++....... .+...+++|||++.++...++.|++.+++.
T Consensus 64 ---------------~~~l~a~~~~~---~~ir~ii~~~~~~~~-----~g~~~vL~IDEi~~l~~~~q~~LL~~le~~- 119 (413)
T PRK13342 64 ---------------FEALSAVTSGV---KDLREVIEEARQRRS-----AGRRTILFIDEIHRFNKAQQDALLPHVEDG- 119 (413)
T ss_pred ---------------EEEEecccccH---HHHHHHHHHHHHhhh-----cCCceEEEEechhhhCHHHHHHHHHHhhcC-
Confidence 12222222211 123444444332111 235679999999999999999999999862
Q ss_pred CCeeEEEEecC-C-CcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 159 ASCRLILCCNS-S-SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE--GL-QLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 159 ~~~~~Il~t~~-~-~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~--~~-~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
...+|.+++. + ..+.++++|||..+.|.+++.+++..++.+.+... ++ .+++++++.+++.++||+|.+++.|+
T Consensus 120 -~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 120 -TITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred -cEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2344444433 2 36889999999999999999999999999987763 54 78999999999999999999999999
Q ss_pred HHhhh
Q 025758 234 TCRVQ 238 (248)
Q Consensus 234 ~~~~~ 238 (248)
.+...
T Consensus 199 ~~~~~ 203 (413)
T PRK13342 199 LAALG 203 (413)
T ss_pred HHHHc
Confidence 88654
No 53
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.1e-28 Score=205.15 Aligned_cols=200 Identities=20% Similarity=0.218 Sum_probs=164.0
Q ss_pred cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758 16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
..++..++.|.+.+..++++| ++|+||+|+||+++|+.+|+.++|....... .|+.|..|..+....+++.
T Consensus 5 PWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~--------~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 5 PWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK--------SCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred CCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHHHcCCCCCE
Confidence 357788999999999999999 9999999999999999999999997543211 2666666666667778887
Q ss_pred eeeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758 95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (248)
Q Consensus 95 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~ 173 (248)
..+.++.. .......+++..+.+.... . .++++|+|||++|.|+.++.|+|+|++|||+.++.|||+|++++.+
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~-~----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHA-R----LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARL 151 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhcc-c----cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 77766543 2344555666665555433 2 5689999999999999999999999999999999999999999999
Q ss_pred cHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 174 ~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
+++++|||+.+.|++|+.++...+|.. ...++++....++..++|++..++++++
T Consensus 152 LpTIrSRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 152 LATLRSRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred hHHHHhccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 999999999999999999999999973 2245677788889999999999888764
No 54
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.3e-27 Score=198.40 Aligned_cols=200 Identities=20% Similarity=0.193 Sum_probs=159.8
Q ss_pred cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758 16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
..+...++.|.+.+..++.+| ++|+||.|+||+++|+.+|+.++|....... .|+.|..|..+....+++.
T Consensus 5 PW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~--------~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 5 PWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ--------PCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred cchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHHhcCCCCCE
Confidence 457888999999999999999 9999999999999999999999997643211 2666666666677778887
Q ss_pred eeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCccc
Q 025758 95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174 (248)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~ 174 (248)
..+.+..........+++..+.+.... . .+..+|+|||++|.|+.++.|+|+|++|+|+.++.||++|+++..++
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~-~----~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~ll 151 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHA-Q----QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALL 151 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhcc-c----cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCc
Confidence 777664333344445666555444333 2 56889999999999999999999999999999999999999999999
Q ss_pred HHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 175 ~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
++++|||+.+.|++++.+++..+|.... ..+++.+..++..++|++..++++++
T Consensus 152 pTI~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 152 PTIYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred hHHHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 9999999999999999999999998543 22344466667788888877776653
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.96 E-value=6.7e-28 Score=218.85 Aligned_cols=197 Identities=21% Similarity=0.303 Sum_probs=150.4
Q ss_pred CCccccCCCCCcccccccHHHHH---HHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQ---NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~---~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~ 77 (248)
++|++||||++|+|++||+.++. .|.+.+..++.++++|+||||+||||+|++++..+.+.-
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f--------------- 80 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF--------------- 80 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcc---------------
Confidence 48999999999999999999884 788888888999999999999999999999998652110
Q ss_pred CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
+.+.....+. ....+.+......... .+...++||||+|.++...++.|++.+++.
T Consensus 81 -----------------~~lna~~~~i---~dir~~i~~a~~~l~~----~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g 136 (725)
T PRK13341 81 -----------------SSLNAVLAGV---KDLRAEVDRAKERLER----HGKRTILFIDEVHRFNKAQQDALLPWVENG 136 (725)
T ss_pred -----------------eeehhhhhhh---HHHHHHHHHHHHHhhh----cCCceEEEEeChhhCCHHHHHHHHHHhcCc
Confidence 1111111111 1123333332221111 224679999999999999999999988852
Q ss_pred cCCeeEEEEecCC--CcccHHHhhhhheeeecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHccccHHHH
Q 025758 158 SASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-------KEGLQLPSGFATRLAEKSNRSLRRA 228 (248)
Q Consensus 158 ~~~~~~Il~t~~~--~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~-------~~~~~~~~~~~~~l~~~~~g~~r~~ 228 (248)
...+|..++.. ..+.+++.|||.++.|++++.+++..++.+.+. .+++.+++++++.|++.++||+|.+
T Consensus 137 --~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 137 --TITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred --eEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 23334333332 358899999999999999999999999999987 4578899999999999999999999
Q ss_pred HHHHHHHhhh
Q 025758 229 ILSFETCRVQ 238 (248)
Q Consensus 229 ~~~l~~~~~~ 238 (248)
++.|+.++..
T Consensus 215 ln~Le~a~~~ 224 (725)
T PRK13341 215 LNALELAVES 224 (725)
T ss_pred HHHHHHHHHh
Confidence 9999997753
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.6e-27 Score=198.56 Aligned_cols=190 Identities=18% Similarity=0.352 Sum_probs=152.1
Q ss_pred CCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (248)
|+|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+.+|+.+.|.....
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~----------------------- 57 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQR----------------------- 57 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCC-----------------------
Confidence 679999999999999999999999999 89999999999999999999998865321
Q ss_pred ecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~ 168 (248)
.+++...+.+.+........+++.++.+. ..|. .++++|+|||++|.|+.++.|+|+|++|+|+.++.||++|+
T Consensus 58 -~h~D~~~~~~~~~~~i~v~~ir~~~~~~~-~~p~----~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 58 -EYVDIIEFKPINKKSIGVDDIRNIIEEVN-KKPY----EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred -CCCCeEEeccccCCCCCHHHHHHHHHHHh-cCcc----cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 01122233332222233344666555443 3333 56899999999999999999999999999999999999999
Q ss_pred CCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758 169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232 (248)
Q Consensus 169 ~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 232 (248)
+++.++++++|||..+.|.+++.+++..++...+. .++++.+..++..++|++..+...+
T Consensus 132 ~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 132 NLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred ChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999999999999999975442 4567788888888888877766543
No 57
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=3.5e-27 Score=195.65 Aligned_cols=195 Identities=21% Similarity=0.279 Sum_probs=150.5
Q ss_pred ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
.+..+++.|...+..++++| ++|+||+|+||+++|+.+|..++|..... ++.|.+|.-+....+++..
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~-----------~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP-----------AAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC-----------CCcchHHHHHhcCCCCCEE
Confidence 47889999999999999999 99999999999999999999999975321 2222222233444566665
Q ss_pred ee--CCCCcCc-----chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758 96 EL--SPSDAGF-----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168 (248)
Q Consensus 96 ~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~ 168 (248)
.+ .++..+. .....++++.+.+.. .+. .++.+|+|||++|.|+.++.|+|+|++|+|+.++.||++|+
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~-~p~----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLAL-TPQ----YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhh-Ccc----cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 55 4443321 123334444443332 232 45789999999999999999999999999999999999999
Q ss_pred CCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 169 ~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
++..++++++|||..+.|++|+.++..++|.. .+ ++++....++..++|++..++..++
T Consensus 152 ~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 152 QPARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred ChhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999999999999973 23 4566666778888898888877653
No 58
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=3e-27 Score=197.69 Aligned_cols=194 Identities=22% Similarity=0.278 Sum_probs=153.0
Q ss_pred HHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758 23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (248)
Q Consensus 23 ~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (248)
..+++++..++.+| ++|+||+|+||+++|+.+|+.++|....... .|+.|..|..+....+++...+.+++
T Consensus 10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~i~~~~ 81 (328)
T PRK05707 10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG--------ACGSCKGCQLLRAGSHPDNFVLEPEE 81 (328)
T ss_pred HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHHhcCCCCCEEEEeccC
Confidence 34445566689999 9999999999999999999999997643221 25666655566666778877777754
Q ss_pred cC-cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758 102 AG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180 (248)
Q Consensus 102 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR 180 (248)
.+ ......+++..+.+.. .+. .++.+|+|||++|.|+.++.|+|+|++|+|+.++.||++|+++..++++++||
T Consensus 82 ~~~~i~id~iR~l~~~~~~-~~~----~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 82 ADKTIKVDQVRELVSFVVQ-TAQ----LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred CCCCCCHHHHHHHHHHHhh-ccc----cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 32 2344556666555544 332 45889999999999999999999999999999999999999999999999999
Q ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 181 ~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
|+.+.|++|+.++..++|..... ..+++....++..++|++..++.+++
T Consensus 157 c~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 157 CQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred ceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 99999999999999999975431 23466677788899999988877654
No 59
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.96 E-value=2.9e-27 Score=206.89 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=163.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhh--------------------------------cCCCCe--eEEECCCCCCH
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT--------------------------------EQDCPH--LLFYGPPGSGK 47 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~--------------------------------~~~~~~--ill~Gp~G~GK 47 (248)
+|||||+|+.|.||+|.+.+.+.+-.|++ .++++. +||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 69999999999999996666555555542 123333 89999999999
Q ss_pred HHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCC
Q 025758 48 KTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG 127 (248)
Q Consensus 48 Ttla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248)
||+|+.+|++. | |+ -+++++++.... .++.+.+.......+. +.+
T Consensus 340 TTLAHViAkqa-----G-------------------Ys--------VvEINASDeRt~--~~v~~kI~~avq~~s~-l~a 384 (877)
T KOG1969|consen 340 TTLAHVIAKQA-----G-------------------YS--------VVEINASDERTA--PMVKEKIENAVQNHSV-LDA 384 (877)
T ss_pred hHHHHHHHHhc-----C-------------------ce--------EEEecccccccH--HHHHHHHHHHHhhccc-ccc
Confidence 99999999964 1 11 156666554432 2344445544443322 334
Q ss_pred CCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------CC---------------eeEEEEecCCC-cccHHHhhhhheee
Q 025758 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------AS---------------CRLILCCNSSS-KVTEAIRSRCLNIR 185 (248)
Q Consensus 128 ~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------~~---------------~~~Il~t~~~~-~~~~~l~sR~~~i~ 185 (248)
.+.|.+++|||||+-++.+.+.++++++.-. ++ .+||||||+.. ..+.+|+.-+.++.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIA 464 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEE
Confidence 5789999999999999999999999997321 11 24999999987 57888888999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhccccc
Q 025758 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFT 243 (248)
Q Consensus 186 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~ 243 (248)
|.+|....+.++|+.+|.+|++..+..++..|++.+.+|+|..||.||++.....+.+
T Consensus 465 f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~d 522 (877)
T KOG1969|consen 465 FVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRD 522 (877)
T ss_pred ecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999998888753
No 60
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=5.8e-27 Score=197.06 Aligned_cols=203 Identities=22% Similarity=0.322 Sum_probs=156.7
Q ss_pred CCcccccc-cHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 10 KTLDQVIV-HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 10 ~~~~~lig-~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
+.|+.++| |+.+++.|...+..++++| ++|+||+|+||+++|+.+|+.+.|+....... |+.|..|..+.
T Consensus 2 ~~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~--------cg~C~~c~~~~ 73 (329)
T PRK08058 2 MTWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP--------CGTCTNCKRID 73 (329)
T ss_pred CcHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC--------CCcCHHHHHHh
Confidence 36888999 9999999999999999999 79999999999999999999999976322111 44444444444
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC 167 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t 167 (248)
...+++...+.+.+ .......+++.++.+... +. .++++|+||||+|.|+.+++|+|+|++|+|+.++.||++|
T Consensus 74 ~~~hpD~~~i~~~~-~~i~id~ir~l~~~~~~~-~~----~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 74 SGNHPDVHLVAPDG-QSIKKDQIRYLKEEFSKS-GV----ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred cCCCCCEEEecccc-ccCCHHHHHHHHHHHhhC-Cc----ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 44556655555542 223334455555544432 22 4578999999999999999999999999999999999999
Q ss_pred cCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 168 NSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 168 ~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
+++..++++++|||..+.|.+++.+++.+++. +++ ++++....++.. .|+++.++.+++
T Consensus 148 ~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~-~g~~~~A~~l~~ 206 (329)
T PRK08058 148 ENKHQILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGL-TNSVEEALALSE 206 (329)
T ss_pred CChHhCcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence 99999999999999999999999999988886 345 445555566555 467888877654
No 61
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=7.7e-27 Score=193.40 Aligned_cols=196 Identities=16% Similarity=0.244 Sum_probs=157.0
Q ss_pred cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758 16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
..+...++.|.+.+..++++| ++|+||.|+||+++|+.+|+.+.|.+.+. . .|+.|..|.......+++.
T Consensus 6 PWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~--------~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 6 PWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-E--------ACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred ccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-C--------CCCCCHHHHHHHcCCCCCE
Confidence 457888999999999999999 99999999999999999999999987421 1 2666666666677778888
Q ss_pred eeeCCCCcC-cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758 95 VELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (248)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~ 173 (248)
..+.++..+ ......+++..+.+. ..+. .++++|+|||++|.|+.++.|+|+|++|||+.++.||++|++++.+
T Consensus 77 ~~i~p~~~~~~I~vdqiR~l~~~~~-~~~~----~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 77 HVIKPEKEGKSITVEQIRQCNRLAQ-ESSQ----LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred EEEecCcCCCcCCHHHHHHHHHHHh-hCcc----cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 777775432 234444555443333 2332 5688999999999999999999999999999999999999999999
Q ss_pred cHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 174 ~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
+++++|||+.+.|++|+.++..++|.. .++. ....++..++|++..++.+++
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 999999999999999999999999863 3433 234667788888888887764
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.94 E-value=8.3e-26 Score=190.60 Aligned_cols=190 Identities=24% Similarity=0.315 Sum_probs=147.4
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhc----C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
+|-++|||.+|++++|+++.++.+..++.. + ..++++|+||+|+|||++|+.+|..+...- .
T Consensus 14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~-----------~-- 80 (328)
T PRK00080 14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI-----------R-- 80 (328)
T ss_pred hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe-----------E--
Confidence 467899999999999999999988877652 3 345699999999999999999999763210 0
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~ 156 (248)
....... .........+. . ...+.+++|||++.+....++.++..+++
T Consensus 81 -------------------~~~~~~~--~~~~~l~~~l~---~--------l~~~~vl~IDEi~~l~~~~~e~l~~~~e~ 128 (328)
T PRK00080 81 -------------------ITSGPAL--EKPGDLAAILT---N--------LEEGDVLFIDEIHRLSPVVEEILYPAMED 128 (328)
T ss_pred -------------------EEecccc--cChHHHHHHHH---h--------cccCCEEEEecHhhcchHHHHHHHHHHHh
Confidence 0000000 00011222222 1 12457999999999998888888888886
Q ss_pred hcC------------------CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758 157 YSA------------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (248)
Q Consensus 157 ~~~------------------~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l 217 (248)
... ...+|.+|+....+.++++||| ..+.|++|+.+++.+++.+.+...++.++++++.+|
T Consensus 129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i 208 (328)
T PRK00080 129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI 208 (328)
T ss_pred cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 531 1346778888888999999998 679999999999999999999999999999999999
Q ss_pred HHHccccHHHHHHHHHHHh
Q 025758 218 AEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 218 ~~~~~g~~r~~~~~l~~~~ 236 (248)
++.++|++|.+.+.++...
T Consensus 209 a~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 209 ARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred HHHcCCCchHHHHHHHHHH
Confidence 9999999999999998755
No 63
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.94 E-value=3.8e-26 Score=173.25 Aligned_cols=160 Identities=31% Similarity=0.480 Sum_probs=115.7
Q ss_pred ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
||+.+++.|...+..++++| ++|+||+|+||+++|+.+|..++|...... .|+.+..|........++..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---------~c~~c~~c~~~~~~~~~d~~ 71 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED---------PCGECRSCRRIEEGNHPDFI 71 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-----------SSSHHHHHHHTT-CTTEE
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---------CCCCCHHHHHHHhccCcceE
Confidence 79999999999999999999 899999999999999999999999876432 13334333334444566666
Q ss_pred eeCCCCcC-cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCccc
Q 025758 96 ELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174 (248)
Q Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~ 174 (248)
.+.+.... ......+++....+. ..+. .+.++|+||||+|.|+.+++|+|+|+||+|+.++.|||+|+++..++
T Consensus 72 ~~~~~~~~~~i~i~~ir~i~~~~~-~~~~----~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 72 IIKPDKKKKSIKIDQIREIIEFLS-LSPS----EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL 146 (162)
T ss_dssp EEETTTSSSSBSHHHHHHHHHHCT-SS-T----TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred EEecccccchhhHHHHHHHHHHHH-HHHh----cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence 66665442 233344554444332 2222 46899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhheeeecCCC
Q 025758 175 EAIRSRCLNIRINSPT 190 (248)
Q Consensus 175 ~~l~sR~~~i~~~~~~ 190 (248)
++++|||+.++|++++
T Consensus 147 ~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 147 PTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHTTSEEEEE----
T ss_pred HHHHhhceEEecCCCC
Confidence 9999999999998764
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.94 E-value=2.5e-26 Score=187.36 Aligned_cols=197 Identities=22% Similarity=0.384 Sum_probs=153.7
Q ss_pred CccccCCCCCcccccccHHHHH---HHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQ---NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~---~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+++|++||++++|.+||++++. .|...++.+++|.++|+||||+||||+|+.|+..-..+.
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S---------------- 190 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS---------------- 190 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----------------
Confidence 6789999999999999999874 677888999999999999999999999999997321111
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~ 158 (248)
..++++........+ ++++++...+.... .....|+||||+++++...|..|+..+|..
T Consensus 191 -------------yrfvelSAt~a~t~d---vR~ife~aq~~~~l----~krkTilFiDEiHRFNksQQD~fLP~VE~G- 249 (554)
T KOG2028|consen 191 -------------YRFVELSATNAKTND---VRDIFEQAQNEKSL----TKRKTILFIDEIHRFNKSQQDTFLPHVENG- 249 (554)
T ss_pred -------------eEEEEEeccccchHH---HHHHHHHHHHHHhh----hcceeEEEeHHhhhhhhhhhhcccceeccC-
Confidence 123566655554443 56666655544332 346679999999999999999999999852
Q ss_pred CCeeEEEEecCC-C-cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----c---------CCCCCHHHHHHHHHHccc
Q 025758 159 ASCRLILCCNSS-S-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----E---------GLQLPSGFATRLAEKSNR 223 (248)
Q Consensus 159 ~~~~~Il~t~~~-~-~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~---------~~~~~~~~~~~l~~~~~g 223 (248)
...+|-.|++. . .+..+|.|||.++.+.++..+.+..+|.+-+.. + .+.+++.++++++..++|
T Consensus 250 -~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 250 -DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred -ceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 23444444433 3 688899999999999999999999999985541 1 123778999999999999
Q ss_pred cHHHHHHHHHHHh
Q 025758 224 SLRRAILSFETCR 236 (248)
Q Consensus 224 ~~r~~~~~l~~~~ 236 (248)
|.|.++|.|+-..
T Consensus 329 DaR~aLN~Lems~ 341 (554)
T KOG2028|consen 329 DARAALNALEMSL 341 (554)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998874
No 65
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.94 E-value=4e-25 Score=175.03 Aligned_cols=187 Identities=23% Similarity=0.365 Sum_probs=148.2
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhh-----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~-----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
...||++|+|++||+++++.|+-+++ +..+.|++|+||||.||||+|+.+|.++...
T Consensus 18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn------------------ 79 (332)
T COG2255 18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN------------------ 79 (332)
T ss_pred cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC------------------
Confidence 45799999999999999999987764 2336689999999999999999999987211
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
+.... .+.... ..+....+.. ....+|+||||++++++...+.|+..+|++.-
T Consensus 80 ---------------~k~ts-Gp~leK---~gDlaaiLt~--------Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l 132 (332)
T COG2255 80 ---------------LKITS-GPALEK---PGDLAAILTN--------LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL 132 (332)
T ss_pred ---------------eEecc-cccccC---hhhHHHHHhc--------CCcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence 01100 000111 2222332332 33678999999999999999999999998641
Q ss_pred C----------------e--eEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025758 160 S----------------C--RLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (248)
Q Consensus 160 ~----------------~--~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~ 220 (248)
. . ++|-.|+....+..+|++|+ ...++..|+.+++..|+.+-+..-++.++++....|+++
T Consensus 133 DI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 133 DIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR 212 (332)
T ss_pred EEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence 1 1 25666777788999999999 889999999999999999999889999999999999999
Q ss_pred ccccHHHHHHHHHHHh
Q 025758 221 SNRSLRRAILSFETCR 236 (248)
Q Consensus 221 ~~g~~r~~~~~l~~~~ 236 (248)
+.|.+|-|.++|....
T Consensus 213 SRGTPRIAnRLLrRVR 228 (332)
T COG2255 213 SRGTPRIANRLLRRVR 228 (332)
T ss_pred ccCCcHHHHHHHHHHH
Confidence 9999999999997655
No 66
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.2e-25 Score=189.71 Aligned_cols=204 Identities=28% Similarity=0.437 Sum_probs=156.2
Q ss_pred ccccccHHHHHHHHHHhh-cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758 13 DQVIVHQDIAQNLKKLVT-EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~-~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (248)
+++++++.+...+..|.. .++.+| +||+||+|+||||+|.++|+.++|........++ .+..|.......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~--------~~~~~~~~~~~~ 72 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCG--------HCRSCKLIPAGN 72 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCccc--------chhhhhHHhhcC
Confidence 367888888888888877 677999 9999999999999999999999988765432222 112223344445
Q ss_pred ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~ 170 (248)
+++...+.+++..... ...+.++.+....... ...++.+|+||||+|.|+.++++++++++|+++.++.||++||++
T Consensus 73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~-~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSES-PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CCceEEecccccCCCc--chHHHHHHHHHHhccC-CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 6677888887765542 2233344443322221 114688999999999999999999999999999999999999999
Q ss_pred CcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 171 ~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
..++++++|||..+.|++++.......++ ++.+..++..+.||+|.+++.++.....
T Consensus 150 ~~il~tI~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 150 SKILPTIRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhccchhhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999844443333333 6778999999999999999999988764
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.93 E-value=4.3e-25 Score=172.15 Aligned_cols=186 Identities=23% Similarity=0.327 Sum_probs=139.9
Q ss_pred HHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758 23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (248)
Q Consensus 23 ~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (248)
+.|.+.+..++++| ++|+||+|+|||++|+.++..+.|........ |..+..|........++...+.+..
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~--------c~~~~~c~~~~~~~~~d~~~~~~~~ 73 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEP--------CGECPSCRLIEAGNHPDLHRLEPEG 73 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHHcCCCCcEEEecccc
Confidence 46778888899988 99999999999999999999998863221111 2222222222222333333333322
Q ss_pred cCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
.......+++.++.+.. .+. .++++|+||||++.|+..+++.|++.+|+++..+.||++++++..+.++++|||
T Consensus 74 -~~~~~~~i~~i~~~~~~-~~~----~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~ 147 (188)
T TIGR00678 74 -QSIKVDQVRELVEFLSR-TPQ----ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC 147 (188)
T ss_pred -CcCCHHHHHHHHHHHcc-Ccc----cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc
Confidence 22233345554554443 222 457899999999999999999999999999988999999999899999999999
Q ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHH
Q 025758 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (248)
Q Consensus 182 ~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~ 228 (248)
..+.|.+++.+++.+++... | +++++++.++..++|++|.+
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999999999999864 4 67999999999999999864
No 68
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.93 E-value=4.2e-25 Score=196.10 Aligned_cols=226 Identities=21% Similarity=0.285 Sum_probs=150.1
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
+|+|||||.+|++++|++...+.+...+......+++|+||+|||||++|+++..............+...+..+|....
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~ 133 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR 133 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence 69999999999999999999999998876666778999999999999999999874322111000000000111110000
Q ss_pred -c--ccceeeecccceeeeCCC-CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 82 -I--DLELTTLSSANHVELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 82 -~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
. ...-..........+... ..+... .. ....+.-...+..+++|||++.|++..++.|++++++.
T Consensus 134 ~~~~~~~~~li~~~~~p~~~~~~~~g~~g----------~~-~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 134 FDERGIADPLIGSVHDPIYQGAGPLGIAG----------IP-QPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDR 202 (531)
T ss_pred CCccccchhhcCCcccchhccccccccCC----------cc-cccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhC
Confidence 0 000000000000000000 000000 00 00000111335679999999999999999999999862
Q ss_pred c----------------------------CCeeEEEE-ecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCC
Q 025758 158 S----------------------------ASCRLILC-CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQ 208 (248)
Q Consensus 158 ~----------------------------~~~~~Il~-t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~ 208 (248)
. .+.++|++ ++++..+.++++|||..+.|++++.+++..+++..+.+.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~ 282 (531)
T TIGR02902 203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGIN 282 (531)
T ss_pred eeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 12345554 456778999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 209 LPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 209 ~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+++++++.|...+. |.|++.|+++.++..+
T Consensus 283 is~~al~~I~~y~~-n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 283 LEKHALELIVKYAS-NGREAVNIVQLAAGIA 312 (531)
T ss_pred cCHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 99999998887654 8999999999987543
No 69
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=9e-25 Score=182.76 Aligned_cols=193 Identities=19% Similarity=0.222 Sum_probs=145.4
Q ss_pred ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCccc-ceecccceeeccCCcccccceeeecccce
Q 025758 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
.+...++.|... .++++| ++|+||+|+||+++|+.+|+.++|...+. .. .|+.|..|..+....+++.
T Consensus 5 W~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~--------~Cg~C~~C~~~~~~~HPD~ 74 (342)
T PRK06964 5 WQTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGE--------PCGTCAACNWFAQGNHPDY 74 (342)
T ss_pred ccHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCCHHHHHHHcCCCCCE
Confidence 466777777775 568888 99999999999999999999999976321 11 2555655555666667776
Q ss_pred eeeCCCCc-------------------C--------cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHH
Q 025758 95 VELSPSDA-------------------G--------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQ 147 (248)
Q Consensus 95 ~~~~~~~~-------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~ 147 (248)
..+.++.. + ......+++..+.+. ..+. .++.+|+|||++|+|+.++.
T Consensus 75 ~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~-~~~~----~~~~kV~iI~~ae~m~~~Aa 149 (342)
T PRK06964 75 RIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCG-VGTH----RGGARVVVLYPAEALNVAAA 149 (342)
T ss_pred EEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhc-cCCc----cCCceEEEEechhhcCHHHH
Confidence 66655421 1 112233444443333 2222 56889999999999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHH
Q 025758 148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR 227 (248)
Q Consensus 148 ~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~ 227 (248)
|+|+|++|+|+.++.||++|++++.++++++|||+.+.|++|+.+++.++|... ++ ++ .+.++..++|++..
T Consensus 150 NaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~--~~~~l~~~~Gsp~~ 221 (342)
T PRK06964 150 NALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--AD--ADALLAEAGGAPLA 221 (342)
T ss_pred HHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--Ch--HHHHHHHcCCCHHH
Confidence 999999999999999999999999999999999999999999999999999742 33 22 23346677888887
Q ss_pred HHHHH
Q 025758 228 AILSF 232 (248)
Q Consensus 228 ~~~~l 232 (248)
++.++
T Consensus 222 Al~~~ 226 (342)
T PRK06964 222 ALALA 226 (342)
T ss_pred HHHHH
Confidence 77665
No 70
>PRK04132 replication factor C small subunit; Provisional
Probab=99.93 E-value=3.8e-25 Score=202.05 Aligned_cols=176 Identities=36% Similarity=0.552 Sum_probs=146.1
Q ss_pred eEEEC--CCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHH
Q 025758 37 LLFYG--PPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI 114 (248)
Q Consensus 37 ill~G--p~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (248)
-+..| |++.||||+|+++|+.+++.+.+ ..++++++++.. ....+++.+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~---------------------------~~~lElNASd~r--gid~IR~iI 617 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWR---------------------------HNFLELNASDER--GINVIREKV 617 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccccc---------------------------CeEEEEeCCCcc--cHHHHHHHH
Confidence 34567 88889999999999988653211 113666666531 123577777
Q ss_pred HHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHH
Q 025758 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI 194 (248)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~ 194 (248)
+.+....+.. ...++|+||||+|+|+..++++|++++|+|+.+++||++||++..++++++|||..+.|++++.+++
T Consensus 618 k~~a~~~~~~---~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i 694 (846)
T PRK04132 618 KEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI 694 (846)
T ss_pred HHHHhcCCcC---CCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHH
Confidence 7776655441 2357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcccccC
Q 025758 195 VKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFTM 244 (248)
Q Consensus 195 ~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~~ 244 (248)
..+|.+++.++++.++++.+..|+..++||+|.++++||.++.....++.
T Consensus 695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~ 744 (846)
T PRK04132 695 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITD 744 (846)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999999999999999999999999999998765444443
No 71
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.92 E-value=3.6e-24 Score=179.22 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=141.5
Q ss_pred CCcccccccHHHHHHHHHHhh-----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 10 KTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~-----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
++|++++|++++++.|..++. ++..++++|+||+|+|||++|+.+|..+...-
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~---------------------- 58 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL---------------------- 58 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----------------------
Confidence 589999999999999998886 34456799999999999999999999763210
Q ss_pred ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC-----
Q 025758 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA----- 159 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~----- 159 (248)
........ .......+.+. . ...+.+++|||++.+++..++.|+..+++...
T Consensus 59 ----------~~~~~~~~--~~~~~l~~~l~---~--------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~ 115 (305)
T TIGR00635 59 ----------KITSGPAL--EKPGDLAAILT---N--------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIG 115 (305)
T ss_pred ----------EEeccchh--cCchhHHHHHH---h--------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeec
Confidence 00000000 00011122222 1 12456999999999999888889888875431
Q ss_pred -------------CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccH
Q 025758 160 -------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL 225 (248)
Q Consensus 160 -------------~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~ 225 (248)
...+|.+|+++..+.++++||| ..+.|++++.+++.+++.+.+...++.+++++++.|++.++|++
T Consensus 116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred cCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 1356777888888999999999 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 025758 226 RRAILSFETCRV 237 (248)
Q Consensus 226 r~~~~~l~~~~~ 237 (248)
|.++++++.+..
T Consensus 196 R~~~~ll~~~~~ 207 (305)
T TIGR00635 196 RIANRLLRRVRD 207 (305)
T ss_pred chHHHHHHHHHH
Confidence 999999987653
No 72
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.5e-24 Score=192.24 Aligned_cols=226 Identities=20% Similarity=0.266 Sum_probs=140.4
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCC----e-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCP----H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~----~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
+|+|||+|++++|++||++.++.+..|+.....+ . ++|+||+|+||||+++++|+.+.. ..-.+ .+.. .
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~-~~~Ew-~npv----~ 146 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI-QVQEW-SNPT----L 146 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh-HHHHH-hhhh----h
Confidence 6999999999999999999999999998764432 2 999999999999999999996632 11110 0000 0
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCC-cCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-DTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le 155 (248)
+......+. ........+... ........+.+......... .....+...||||||++.+.......+..+++
T Consensus 147 ~~~~~~~~~-~~~s~~~~~~~~-----~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr 220 (637)
T TIGR00602 147 PDFQKNDHK-VTLSLESCFSNF-----QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILR 220 (637)
T ss_pred hcccccccc-cchhhhhccccc-----cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHH
Confidence 000000000 000000000000 11122233333322211100 00013467899999997664333233444443
Q ss_pred -Hh--cCCeeEEEEecCCCc---------------ccHHHhh--hhheeeecCCCHHHHHHHHHHHHHHcCCC-------
Q 025758 156 -KY--SASCRLILCCNSSSK---------------VTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQ------- 208 (248)
Q Consensus 156 -~~--~~~~~~Il~t~~~~~---------------~~~~l~s--R~~~i~~~~~~~~~~~~il~~~~~~~~~~------- 208 (248)
.+ ....++|+++++... +.+++++ |+..|.|+|++..++.+.|..++..++..
T Consensus 221 ~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 221 WKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred HHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 22 223467777664321 2268887 56789999999999999999999886432
Q ss_pred CCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 209 LPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 209 ~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
.+++++..|+..+.||+|.||+.||.++..+
T Consensus 301 p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 301 PKKTSVELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred CCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 2468999999999999999999999998755
No 73
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=1.4e-23 Score=171.36 Aligned_cols=192 Identities=19% Similarity=0.257 Sum_probs=146.6
Q ss_pred ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758 17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
.|+.+++.|...+..++++| ++|+|| +||+++|+.+|..++|.+.+.... |+.|..|.......+++..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~--------Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLP--------CGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHhcCCCCCee
Confidence 47889999999999999999 999996 789999999999999987432211 4555554555556677776
Q ss_pred eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccH
Q 025758 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (248)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~ 175 (248)
.+.+.+ .......+++..+.+... |. .+..+|+|||++|.|+.++.|+|+|++|+|+.++.||++|+++..+++
T Consensus 76 ~i~p~~-~~I~idqIR~l~~~~~~~-p~----~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLp 149 (290)
T PRK07276 76 VIEPQG-QVIKTDTIRELVKNFSQS-GY----EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLP 149 (290)
T ss_pred eecCCC-CcCCHHHHHHHHHHHhhC-cc----cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCch
Confidence 666643 223445566666655543 32 567899999999999999999999999999999999999999999999
Q ss_pred HHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232 (248)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 232 (248)
+++|||+.++|++ +.+.+.+++. ++|+. ++....++.. .|++..++.++
T Consensus 150 TI~SRcq~i~f~~-~~~~~~~~L~----~~g~~--~~~a~~la~~-~~s~~~A~~l~ 198 (290)
T PRK07276 150 TIKSRTQIFHFPK-NEAYLIQLLE----QKGLL--KTQAELLAKL-AQSTSEAEKLA 198 (290)
T ss_pred HHHHcceeeeCCC-cHHHHHHHHH----HcCCC--hHHHHHHHHH-CCCHHHHHHHh
Confidence 9999999999976 6777777665 45543 4444444444 45788877766
No 74
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=3.4e-23 Score=168.61 Aligned_cols=171 Identities=16% Similarity=0.241 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeee
Q 025758 19 QDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (248)
...++.|...+..++++| ++|+||.|+||+++|+.+|+.++|..... . |..+....+|+...+
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~-------------c~~~~~~~HPD~~~i 66 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPE---A-------------AYKISQKIHPDIHEF 66 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---H-------------HHHHhcCCCCCEEEE
Confidence 356789999999999999 99999999999999999999999975221 0 112233345555555
Q ss_pred CCCCcC-cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHH
Q 025758 98 SPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176 (248)
Q Consensus 98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~ 176 (248)
.|+..+ ......+++..+.+.. .|. ++.++|+|||++|.|+.+++|+|+|++|+|+.++.||++|+++..++++
T Consensus 67 ~p~~~~~~I~idqiR~l~~~~~~-~p~----e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 67 SPQGKGRLHSIETPRAIKKQIWI-HPY----ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ecCCCCCcCcHHHHHHHHHHHhh-Ccc----CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 554432 2334445555554443 333 5689999999999999999999999999999999999999999999999
Q ss_pred HhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccH
Q 025758 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL 225 (248)
Q Consensus 177 l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~ 225 (248)
++|||+.++|+++. ...++++.+..++..++|++
T Consensus 142 I~SRcq~~~~~~~~---------------~~~i~~~~~~~l~~~~~g~~ 175 (290)
T PRK05917 142 IRSRSLSIHIPMEE---------------KTLVSKEDIAYLIGYAQGKE 175 (290)
T ss_pred HHhcceEEEccchh---------------ccCCCHHHHHHHHHHhCCCh
Confidence 99999999998762 11345666666666666665
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.91 E-value=1.4e-22 Score=162.96 Aligned_cols=183 Identities=15% Similarity=0.298 Sum_probs=137.6
Q ss_pred CCccccc--ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 10 KTLDQVI--VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 10 ~~~~~li--g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
.+|++++ ++..+...+.++...+..++++|+||+|+|||+++++++..+.... ..
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~-~~---------------------- 75 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRG-RA---------------------- 75 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-Ce----------------------
Confidence 4678887 4778899999988766666799999999999999999998764221 00
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCC--eeE
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSAS--CRL 163 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~--~~~ 163 (248)
+.|.+.+.... ...+.++.+. ...+++|||++.+. +..+..|+++++....+ ..+
T Consensus 76 -------v~y~~~~~~~~---~~~~~~~~~~-----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~l 134 (235)
T PRK08084 76 -------VGYVPLDKRAW---FVPEVLEGME-----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRL 134 (235)
T ss_pred -------EEEEEHHHHhh---hhHHHHHHhh-----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeE
Confidence 11111000000 0112222221 23589999999874 55677888888775432 367
Q ss_pred EEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758 164 ILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 164 Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 236 (248)
|++++.+. .+.++++||+ .++.+.+|+.+++..++++.+..+++.++++++++|+++++||+|.+++.|+.+.
T Consensus 135 i~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 135 LITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred EEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 88877664 3679999999 7999999999999999999899899999999999999999999999999999875
No 76
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.91 E-value=1.1e-22 Score=166.25 Aligned_cols=193 Identities=23% Similarity=0.298 Sum_probs=131.7
Q ss_pred CcccccccHHHHHHHHHHhh---------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758 11 TLDQVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~---------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~ 75 (248)
.+++++|.+.+++.+...+. .+...+++|+|||||||||+|+++|+.+..... . ..+.
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~--~-~~~~---- 76 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV--L-SKGH---- 76 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc--c-cCCc----
Confidence 46789999999987764421 223456999999999999999999997632110 0 0000
Q ss_pred ccCCcccccceeeecccceeeeCCCCc-Ccc---hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDA-GFQ---DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (248)
.+.....+. +.. ......+.++. ..+.||||||++.|.
T Consensus 77 ------------------~v~~~~~~l~~~~~g~~~~~~~~~~~~------------a~~~VL~IDE~~~L~~~~~~~~~ 126 (261)
T TIGR02881 77 ------------------LIEVERADLVGEYIGHTAQKTREVIKK------------ALGGVLFIDEAYSLARGGEKDFG 126 (261)
T ss_pred ------------------eEEecHHHhhhhhccchHHHHHHHHHh------------ccCCEEEEechhhhccCCccchH
Confidence 011111100 000 01112222221 123599999999875
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l 217 (248)
....+.|++.+++......+|+++...+ .+.++++||+ ..+.|++++.+++.+++++.+...++.++++++..+
T Consensus 127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 3466788888887765556666644322 3678999999 679999999999999999999999999999999988
Q ss_pred HHH----------ccccHHHHHHHHHHHhhhcc
Q 025758 218 AEK----------SNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 218 ~~~----------~~g~~r~~~~~l~~~~~~~~ 240 (248)
.+. ..||+|.+.|+++.+..+..
T Consensus 207 ~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 207 REHLYKVDQLSSREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 643 25899999999999775543
No 77
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=1e-22 Score=162.46 Aligned_cols=178 Identities=16% Similarity=0.189 Sum_probs=134.2
Q ss_pred CCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHH
Q 025758 34 CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE 112 (248)
Q Consensus 34 ~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (248)
.+| ++|+||.|+||.++|..+|+.+.|..... .|+.|..|..+....+++...+.+... ......+++
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~----------~Cg~C~sC~~i~~~~HPDl~~i~p~~~-~I~id~ir~ 74 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANG----------FCKTCESCLKILNGKYNDFYLIFDQKN-PIKKEDALS 74 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCC----------CCCCCHHHHHHhcCCCCCEEEecCCcc-cCCHHHHHH
Confidence 466 99999999999999999999999986421 156666555666667777666555432 233444555
Q ss_pred HHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCC---
Q 025758 113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP--- 189 (248)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~--- 189 (248)
..+.+.. .+. ..++++|+|||++|+|+.++.|+|+|++|+|+.++.||++|++++.++++++|||+.+.|+++
T Consensus 75 l~~~l~~-~s~---e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~ 150 (261)
T PRK05818 75 IINKLNR-PSV---ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKK 150 (261)
T ss_pred HHHHHcc-Cch---hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhh
Confidence 5555542 221 134789999999999999999999999999999999999999999999999999999999888
Q ss_pred -------CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHH
Q 025758 190 -------TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (248)
Q Consensus 190 -------~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 235 (248)
.+.++...+.. .. .+++ .++..++|+...++.+++.+
T Consensus 151 ~~~~~~~~~~~i~~~L~~---~~--~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 151 VPFKVESNDRYFQYILLS---FY--SVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred cccccccChHHHHHHHHH---cc--CccH----HHHHHcCCCHHHHHHHHHHH
Confidence 44444554442 11 2333 66677789999998888855
No 78
>PRK06893 DNA replication initiation factor; Validated
Probab=99.89 E-value=1e-21 Score=157.38 Aligned_cols=185 Identities=18% Similarity=0.280 Sum_probs=130.5
Q ss_pred CCCCcccccccHH--HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758 8 RPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (248)
Q Consensus 8 ~p~~~~~lig~~~--~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (248)
.|.+|+++++++. ....+.+....+..+.++|+||+|+|||++++++|.++........
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~------------------- 71 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAI------------------- 71 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE-------------------
Confidence 5789999997443 3334444444444556899999999999999999997633221100
Q ss_pred eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCC-ee
Q 025758 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSAS-CR 162 (248)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~-~~ 162 (248)
++.+. .... ...+.++. ..+.++++|||++.+. ...+..|+++++....+ ..
T Consensus 72 --------y~~~~--~~~~----~~~~~~~~-----------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~ 126 (229)
T PRK06893 72 --------YIPLS--KSQY----FSPAVLEN-----------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKT 126 (229)
T ss_pred --------EeeHH--Hhhh----hhHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCc
Confidence 01110 0000 00111211 1245799999998764 44566789988876443 33
Q ss_pred E-EEEecCCC----cccHHHhhhhh---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758 163 L-ILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (248)
Q Consensus 163 ~-Il~t~~~~----~~~~~l~sR~~---~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 234 (248)
+ |++++... ...++++||+. .+.+++|+.+++..++++.+..+++.++++++.+|+++++||+|.+.+.|+.
T Consensus 127 illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 127 LLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred EEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4 45555543 24589999995 8999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q 025758 235 CR 236 (248)
Q Consensus 235 ~~ 236 (248)
+.
T Consensus 207 l~ 208 (229)
T PRK06893 207 LD 208 (229)
T ss_pred HH
Confidence 75
No 79
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.89 E-value=8.4e-22 Score=173.19 Aligned_cols=220 Identities=22% Similarity=0.349 Sum_probs=135.1
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhc---CCC-C-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QDC-P-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~---~~~-~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
+|+|||+|++++||+.+++.++.++.|++. +.. . .++|+||+||||||+++++|+++...- -+ |.
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v-~E-------w~-- 77 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEV-QE-------WI-- 77 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCee-EE-------ec--
Confidence 799999999999999999999999999874 222 2 389999999999999999999873321 11 11
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHH-HhcCCC-cCC-----CCCCeeEEEEeCCCC-CCHHHHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM-AKNRPI-DTK-----GKRGFKVLVLNEVDK-LSREAQH 148 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-----~~~~~~viiiDE~d~-l~~~~~~ 148 (248)
+|........ ...++.........+.. ..+.+..+ .....+ .+. .....+||+|||... ...+. .
T Consensus 78 np~~~~~~~~---~~~d~~s~~~~~~~f~s---q~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~-~ 150 (519)
T PF03215_consen 78 NPVSFRESDN---QEDDFESDFNKFDEFLS---QSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDT-S 150 (519)
T ss_pred CCCCcccccc---ccccccccccccccccc---hhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhH-H
Confidence 1111000000 00000000000000000 11112211 111111 111 134789999999854 44443 6
Q ss_pred HHHHHHHHhc--CC--eeEEEEecC-C-------C--------cccHHHhhh--hheeeecCCCHHHHHHHHHHHHHHc-
Q 025758 149 SLRRTMEKYS--AS--CRLILCCNS-S-------S--------KVTEAIRSR--CLNIRINSPTEEQIVKVLEFIAKKE- 205 (248)
Q Consensus 149 ~ll~~le~~~--~~--~~~Il~t~~-~-------~--------~~~~~l~sR--~~~i~~~~~~~~~~~~il~~~~~~~- 205 (248)
.|..+|+++. .. ..+|++|.. . . -+.+.+... +..|.|+|.....+.+.|.+++..|
T Consensus 151 ~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 151 RFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHh
Confidence 7777776552 22 334444411 1 0 133455543 4789999999999999999999988
Q ss_pred ----CC-CCC--HHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 206 ----GL-QLP--SGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 206 ----~~-~~~--~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+. ..+ .++++.|+..+.||+|.||+.||+++..
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 22 222 4569999999999999999999999983
No 80
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=4.4e-22 Score=166.43 Aligned_cols=171 Identities=19% Similarity=0.299 Sum_probs=133.9
Q ss_pred cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758 16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
..+...++.+... .++++| ++|+||+|+|||++|+.+|+.+.|...+.- ...|+.|..|..+....+++.
T Consensus 4 PW~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~-------~~~Cg~C~~C~~~~~~~HpD~ 74 (325)
T PRK08699 4 PWHQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPG-------HKPCGECMSCHLFGQGSHPDF 74 (325)
T ss_pred CccHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCcCHHHHHHhcCCCCCE
Confidence 3466677777766 468888 999999999999999999999999654211 012666666666777788888
Q ss_pred eeeCCCCc----C----cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Q 025758 95 VELSPSDA----G----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC 166 (248)
Q Consensus 95 ~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~ 166 (248)
..+.++.. + ......+++..+.+. ..+. .+..+|++||++++|++.+++.+++++|+++.++.||++
T Consensus 75 ~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~-~~p~----~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilv 149 (325)
T PRK08699 75 YEITPLSDEPENGRKLLQIKIDAVREIIDNVY-LTSV----RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLV 149 (325)
T ss_pred EEEecccccccccccCCCcCHHHHHHHHHHHh-hCcc----cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEE
Confidence 88877431 2 123344565444333 3333 457899999999999999999999999999888889999
Q ss_pred ecCCCcccHHHhhhhheeeecCCCHHHHHHHHHH
Q 025758 167 CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEF 200 (248)
Q Consensus 167 t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~ 200 (248)
|+++..++++++|||+.+.|++|+.++...+|..
T Consensus 150 th~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 150 SHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred eCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999864
No 81
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.88 E-value=2.4e-21 Score=165.59 Aligned_cols=221 Identities=20% Similarity=0.325 Sum_probs=144.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhh-----cCCCCe--eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~-----~~~~~~--ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~ 74 (248)
+|+|||+|.+.++|..+++-+..++.|++ ..+.++ +||+||+|+||||+++.++.+++.+-- .|.
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~--------Ew~ 142 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI--------EWS 142 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceee--------eec
Confidence 69999999999999999999999999998 566665 899999999999999999997732211 010
Q ss_pred eccCCcccccceeeecccceeeeCCCCcCcc--hhHHH-HHHHHHHHhcCCC---cCCCCCCeeEEEEeCC-CCCCHHHH
Q 025758 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQ--DRYVV-QEVIKEMAKNRPI---DTKGKRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~---~~~~~~~~~viiiDE~-d~l~~~~~ 147 (248)
+|.... .+.+..-........ ..... +..+....++... +......+++|++||+ +....+..
T Consensus 143 --Npi~~~--------~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~ 212 (634)
T KOG1970|consen 143 --NPINLK--------EPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDS 212 (634)
T ss_pred --CCcccc--------ccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhH
Confidence 111100 000111111111111 11111 1111211121111 2223567889999997 54444455
Q ss_pred HHHHHHHHHhcCC---eeEEEEecCCC--------cccHHHhh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCC----
Q 025758 148 HSLRRTMEKYSAS---CRLILCCNSSS--------KVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLP---- 210 (248)
Q Consensus 148 ~~ll~~le~~~~~---~~~Il~t~~~~--------~~~~~l~s--R~~~i~~~~~~~~~~~~il~~~~~~~~~~~~---- 210 (248)
..|..+|+.+.+. ..|+++|+... .....+.- |+..|.|+|....-+++.|.+++..++...+
T Consensus 213 ~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 213 ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 5566666555332 34666665442 24444443 4478999999999999999999999877666
Q ss_pred --HHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758 211 --SGFATRLAEKSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 211 --~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 240 (248)
...++.++..++||+|.||+.||.+...+.
T Consensus 293 ~~~~~v~~i~~~s~GDIRsAInsLQlssskg~ 324 (634)
T KOG1970|consen 293 PDTAEVELICQGSGGDIRSAINSLQLSSSKGE 324 (634)
T ss_pred chhHHHHHHHHhcCccHHHHHhHhhhhcccCc
Confidence 778999999999999999999999964443
No 82
>PRK08727 hypothetical protein; Validated
Probab=99.88 E-value=1e-20 Score=151.98 Aligned_cols=183 Identities=21% Similarity=0.329 Sum_probs=131.0
Q ss_pred CCcccccccH-HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758 10 KTLDQVIVHQ-DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (248)
Q Consensus 10 ~~~~~lig~~-~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (248)
.+|+++++.+ .....+.....+.....++|+||+|+|||+++++++..+......
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~------------------------ 71 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRS------------------------ 71 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCc------------------------
Confidence 5888987643 344444444332222349999999999999999999876322110
Q ss_pred ecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcC-CeeEEE
Q 025758 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SCRLIL 165 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~-~~~~Il 165 (248)
..|.+.... . ....+.++.+ .+..+++|||++.+. +..+..++++++.... ...+|+
T Consensus 72 ------~~y~~~~~~-~--~~~~~~~~~l-----------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ 131 (233)
T PRK08727 72 ------SAYLPLQAA-A--GRLRDALEAL-----------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY 131 (233)
T ss_pred ------EEEEeHHHh-h--hhHHHHHHHH-----------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 111110000 0 0011222222 245699999998874 4566788898886543 346888
Q ss_pred EecCCC----cccHHHhhh---hheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758 166 CCNSSS----KVTEAIRSR---CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 166 ~t~~~~----~~~~~l~sR---~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 236 (248)
+++.+. .+.++++|| +.++.|++|+.+++..++++++..+++.++++++++|++.++||+|.+++.|+.+.
T Consensus 132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888765 357999999 68999999999999999999999999999999999999999999999999998776
No 83
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.87 E-value=1.9e-20 Score=150.20 Aligned_cols=182 Identities=18% Similarity=0.295 Sum_probs=135.4
Q ss_pred CCCCcccccc--cHHHHHHHHHHhhcC-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 8 RPKTLDQVIV--HQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 8 ~p~~~~~lig--~~~~~~~l~~~~~~~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
+|.+|+++++ ++.+...+..+.... ....++|+||+|||||++|++++..........+
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~------------------ 74 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNAR------------------ 74 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE------------------
Confidence 5788999883 677888888887632 3345999999999999999999987643322111
Q ss_pred ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCee--
Q 025758 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCR-- 162 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~-- 162 (248)
.+.... ..+.+ .. ....++++|||++.++...+..|+.+++.......
T Consensus 75 -----------~i~~~~--------~~~~~---~~--------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~ 124 (227)
T PRK08903 75 -----------YLDAAS--------PLLAF---DF--------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGA 124 (227)
T ss_pred -----------EEehHH--------hHHHH---hh--------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcE
Confidence 111100 00001 10 12456999999999998889999999987654433
Q ss_pred EEEEecCCC---cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758 163 LILCCNSSS---KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 163 ~Il~t~~~~---~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 236 (248)
+|++++... .+.+.+.||+ ..+.+++|+.++...++.+.+.+.++.++++++.+|++.++||+|++.+.|+.+.
T Consensus 125 vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 125 LLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred EEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 444444332 3567888897 6899999999999999999988999999999999999999999999999998876
Q ss_pred h
Q 025758 237 V 237 (248)
Q Consensus 237 ~ 237 (248)
.
T Consensus 205 ~ 205 (227)
T PRK08903 205 R 205 (227)
T ss_pred H
Confidence 4
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=6e-21 Score=157.30 Aligned_cols=190 Identities=18% Similarity=0.282 Sum_probs=128.8
Q ss_pred cccccHHHHHHHHHHhh---------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 14 QVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~---------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+++|.+.+++.+..++. .+...|++|+|||||||||+|+++|+.+..... .. .+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~--~~-~~-------- 92 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY--IK-KG-------- 92 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC--CC-CC--------
Confidence 67899998887765531 122345999999999999999999986532110 00 00
Q ss_pred CcccccceeeecccceeeeCCCCc-Ccc---hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC---------CHH
Q 025758 79 SRNIDLELTTLSSANHVELSPSDA-GFQ---DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SRE 145 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~ 145 (248)
..+.+...+. +.. ......+.++. ..+.|+||||++.+ +.+
T Consensus 93 --------------~~~~v~~~~l~~~~~g~~~~~~~~~l~~------------a~ggVLfIDE~~~l~~~~~~~~~~~e 146 (287)
T CHL00181 93 --------------HLLTVTRDDLVGQYIGHTAPKTKEVLKK------------AMGGVLFIDEAYYLYKPDNERDYGSE 146 (287)
T ss_pred --------------ceEEecHHHHHHHHhccchHHHHHHHHH------------ccCCEEEEEccchhccCCCccchHHH
Confidence 0011111100 000 00011122221 13359999999876 456
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 025758 146 AQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (248)
Q Consensus 146 ~~~~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~ 219 (248)
.++.|++.++....+..+|++++... ...|+++||+ ..+.|++|+.+++..++...+.+.+..++++....+..
T Consensus 147 ~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~ 226 (287)
T CHL00181 147 AIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLD 226 (287)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 78889999998766666667654321 2358999999 58999999999999999999999999999887776665
Q ss_pred H--------ccccHHHHHHHHHHHhhhcc
Q 025758 220 K--------SNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 220 ~--------~~g~~r~~~~~l~~~~~~~~ 240 (248)
. ..||+|.+.+.++.+.....
T Consensus 227 ~i~~~~~~~~~GNaR~vrn~ve~~~~~~~ 255 (287)
T CHL00181 227 YIKKRMEQPLFANARSVRNALDRARMRQA 255 (287)
T ss_pred HHHHhCCCCCCccHHHHHHHHHHHHHHHH
Confidence 4 24889999999998886554
No 85
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=2.8e-20 Score=153.36 Aligned_cols=182 Identities=15% Similarity=0.163 Sum_probs=134.1
Q ss_pred HHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccc-eeee
Q 025758 20 DIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN-HVEL 97 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 97 (248)
.+++.+.+.++.++..| ++|+|+.|.||+++|+.++..++|...+...... ++. ...+
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~--------------------~p~n~~~~ 62 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE--------------------LPANIILF 62 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC--------------------CCcceEEe
Confidence 46778899999999999 8899999999999999999999886532211000 111 1222
Q ss_pred CCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHH
Q 025758 98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177 (248)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l 177 (248)
.+.+ .......+++.++.+... +. ..++++|+|||+++.|+..+.|+|+|++|+|+.++.||++|+++..+++++
T Consensus 63 d~~g-~~i~vd~Ir~l~~~~~~~-~~---~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI 137 (299)
T PRK07132 63 DIFD-KDLSKSEFLSAINKLYFS-SF---VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI 137 (299)
T ss_pred ccCC-CcCCHHHHHHHHHHhccC-Cc---ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH
Confidence 2111 112223344444433321 11 135899999999999999999999999999999999999999999999999
Q ss_pred hhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 178 ~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
+|||+++.|.+++.+++..+|... + ++++....++..++ ++..|+.+++
T Consensus 138 ~SRc~~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~ 186 (299)
T PRK07132 138 VSRCQVFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYIN 186 (299)
T ss_pred HhCeEEEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHh
Confidence 999999999999999999998732 3 55666666666666 4877776653
No 86
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.87 E-value=1.7e-20 Score=169.20 Aligned_cols=216 Identities=21% Similarity=0.269 Sum_probs=143.6
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-------cccceecccceee
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWKI 75 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-------~~~~~~~~~~~~~ 75 (248)
..+.|||.+|++++|+..+++.+...+......+++|+|||||||||+|+++.+...... ..-+.+++..+.
T Consensus 144 ~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~- 222 (615)
T TIGR02903 144 AQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR- 222 (615)
T ss_pred HhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-
Confidence 356799999999999999999888887766667799999999999999999998542111 111222221110
Q ss_pred ccCCcccccceeeecccceeeeCCCCcCcchhH---HHHHHHHHHHhc-CCCcCCCCCCeeEEEEeCCCCCCHHHHHHHH
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRY---VVQEVIKEMAKN-RPIDTKGKRGFKVLVLNEVDKLSREAQHSLR 151 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll 151 (248)
.. ...+ ...-.+..... ...+.+...... ....+.......++||||++.|++..+..|+
T Consensus 223 ----------~d----~~~i--~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 223 ----------WD----PREV--TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLL 286 (615)
T ss_pred ----------CC----HHHH--hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHH
Confidence 00 0000 00000000000 011111111000 0001111223459999999999999999999
Q ss_pred HHHHHhc--------------------------CCeeEEEE---ecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHH
Q 025758 152 RTMEKYS--------------------------ASCRLILC---CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA 202 (248)
Q Consensus 152 ~~le~~~--------------------------~~~~~Il~---t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~ 202 (248)
+.+++.. ....|+++ ++++..+.++++|||..+.|++++.+++..++.+.+
T Consensus 287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence 9998632 11224444 345567899999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758 203 KKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 236 (248)
.+.++.+++++++.|++.+. +.|.+++.|+.+.
T Consensus 367 ~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~ 399 (615)
T TIGR02903 367 EKINVHLAAGVEELIARYTI-EGRKAVNILADVY 399 (615)
T ss_pred HHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 98888899999988888754 6799999997764
No 87
>PRK06620 hypothetical protein; Validated
Probab=99.86 E-value=4.6e-20 Score=145.98 Aligned_cols=173 Identities=19% Similarity=0.225 Sum_probs=125.6
Q ss_pred ccccCCCCCcccccc---cHHHHHHHHHHhhcCC-C---CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758 3 WVDKYRPKTLDQVIV---HQDIAQNLKKLVTEQD-C---PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (248)
Q Consensus 3 ~~~ky~p~~~~~lig---~~~~~~~l~~~~~~~~-~---~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~ 75 (248)
|-.+| +|++++. +..+...++.|...+. . +.++|+||+|+||||++++++.... .
T Consensus 9 ~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~------------ 70 (214)
T PRK06620 9 TSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN---A------------ 70 (214)
T ss_pred CCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC---C------------
Confidence 34454 5677754 6678889998876432 2 3499999999999999999887320 0
Q ss_pred ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHH
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le 155 (248)
.+..... . ...+. ....+++|||++.+. ...|+++++
T Consensus 71 --------------------~~~~~~~-~---------~~~~~----------~~~d~lliDdi~~~~---~~~lf~l~N 107 (214)
T PRK06620 71 --------------------YIIKDIF-F---------NEEIL----------EKYNAFIIEDIENWQ---EPALLHIFN 107 (214)
T ss_pred --------------------EEcchhh-h---------chhHH----------hcCCEEEEeccccch---HHHHHHHHH
Confidence 0000000 0 00011 133589999999653 346788887
Q ss_pred HhcCCee-EEEEecCCC---cccHHHhhhhh---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHH
Q 025758 156 KYSASCR-LILCCNSSS---KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228 (248)
Q Consensus 156 ~~~~~~~-~Il~t~~~~---~~~~~l~sR~~---~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~ 228 (248)
....++. ++++++.+. .+ ++++||+. ++.+.+|+.+.+..++++.+...++.++++++++|+++++||+|.+
T Consensus 108 ~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 108 IINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Confidence 6654444 445544333 24 89999996 9999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHhh
Q 025758 229 ILSFETCRV 237 (248)
Q Consensus 229 ~~~l~~~~~ 237 (248)
++.|+.+..
T Consensus 187 ~~~l~~l~~ 195 (214)
T PRK06620 187 IEILENINY 195 (214)
T ss_pred HHHHHHHHH
Confidence 999998764
No 88
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.85 E-value=1e-19 Score=145.82 Aligned_cols=186 Identities=19% Similarity=0.329 Sum_probs=135.1
Q ss_pred CCCCcccccc--cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758 8 RPKTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (248)
Q Consensus 8 ~p~~~~~lig--~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (248)
.|.+|++++. ++.+.+.+++++..+...+++|+||+|||||++|+.++.....+....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~------------------- 70 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAI------------------- 70 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEE-------------------
Confidence 4577888873 7779999999987666667999999999999999999986632221111
Q ss_pred eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH--HHHHHHHHHHhcC-Cee
Q 025758 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTMEKYSA-SCR 162 (248)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~--~~~ll~~le~~~~-~~~ 162 (248)
.+....... ...+.+.. .....+++|||++.++... +..++.+++.... +..
T Consensus 71 ----------~i~~~~~~~----~~~~~~~~-----------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~ 125 (226)
T TIGR03420 71 ----------YLPLAELAQ----ADPEVLEG-----------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGR 125 (226)
T ss_pred ----------EEeHHHHHH----hHHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCe
Confidence 111100000 00111111 1134599999999987643 7888888876532 346
Q ss_pred EEEEecCCC-c--cc-HHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHH
Q 025758 163 LILCCNSSS-K--VT-EAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235 (248)
Q Consensus 163 ~Il~t~~~~-~--~~-~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 235 (248)
+|++++... . .. +.+.+|+ ..+.+++++.++...++...+.+.++.++++++..|++.++||+|++.+.++.+
T Consensus 126 iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 126 LLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred EEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 777766443 2 22 7888897 489999999999999999988888999999999999999999999999998877
Q ss_pred hh
Q 025758 236 RV 237 (248)
Q Consensus 236 ~~ 237 (248)
..
T Consensus 206 ~~ 207 (226)
T TIGR03420 206 DR 207 (226)
T ss_pred HH
Confidence 64
No 89
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=5.7e-20 Score=151.59 Aligned_cols=194 Identities=18% Similarity=0.263 Sum_probs=130.1
Q ss_pred cccccHHHHHHHHHHhh----------cC-----CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 14 QVIVHQDIAQNLKKLVT----------EQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~----------~~-----~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+++|.+.+++.+..++. .| ...+++|+||||||||++|+++|..+..... .. .+ ++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~--~~-~~-~~v---- 94 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY--VR-KG-HLV---- 94 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC--cc-cc-eEE----
Confidence 57898888888765431 11 1225999999999999999999986632111 00 00 000
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC---------CHHHHHH
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHS 149 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~ 149 (248)
..+..+.+. ...+.. .....+.++. ..+.+++|||++.| +...++.
T Consensus 95 ---------~v~~~~l~~---~~~g~~-~~~~~~~~~~------------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~ 149 (284)
T TIGR02880 95 ---------SVTRDDLVG---QYIGHT-APKTKEILKR------------AMGGVLFIDEAYYLYRPDNERDYGQEAIEI 149 (284)
T ss_pred ---------EecHHHHhH---hhcccc-hHHHHHHHHH------------ccCcEEEEechhhhccCCCccchHHHHHHH
Confidence 000000000 000100 0112222221 12359999999977 3456788
Q ss_pred HHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Q 025758 150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK--- 220 (248)
Q Consensus 150 ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~--- 220 (248)
|++.++....+..+|++++... .+.+++++|+ ..|.|++++.+++..++...+.+.+..++++.+..+.+.
T Consensus 150 Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~ 229 (284)
T TIGR02880 150 LLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIAL 229 (284)
T ss_pred HHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence 9999987766666666655431 3468999999 689999999999999999999998888999998888765
Q ss_pred -----ccccHHHHHHHHHHHhhhcc
Q 025758 221 -----SNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 221 -----~~g~~r~~~~~l~~~~~~~~ 240 (248)
..||+|.+.|.++.+.....
T Consensus 230 ~~~~~~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 230 RRTQPHFANARSIRNAIDRARLRQA 254 (284)
T ss_pred hCCCCCCChHHHHHHHHHHHHHHHH
Confidence 35999999999999886655
No 90
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.84 E-value=3.1e-20 Score=145.64 Aligned_cols=184 Identities=24% Similarity=0.331 Sum_probs=126.2
Q ss_pred CCCCCcccccccHHHHHH---HHHHhh------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758 7 YRPKTLDQVIVHQDIAQN---LKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~---l~~~~~------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~ 77 (248)
....+|+|++||+++++. +.++++ .|-+.++||+||||||||.+|+++|.+...+-
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~--------------- 179 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL--------------- 179 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce---------------
Confidence 456789999999998864 445554 34456799999999999999999998652111
Q ss_pred CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------------HH
Q 025758 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------RE 145 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~~ 145 (248)
-.+.....++- ......+.+..+..... +..|.|++|||.|.+. .+
T Consensus 180 ---------l~vkat~liGe--------hVGdgar~Ihely~rA~-----~~aPcivFiDE~DAiaLdRryQelRGDVsE 237 (368)
T COG1223 180 ---------LLVKATELIGE--------HVGDGARRIHELYERAR-----KAAPCIVFIDELDAIALDRRYQELRGDVSE 237 (368)
T ss_pred ---------EEechHHHHHH--------HhhhHHHHHHHHHHHHH-----hcCCeEEEehhhhhhhhhhhHHHhcccHHH
Confidence 00111111110 01112222332222111 3467899999998763 23
Q ss_pred HHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 025758 146 AQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN 222 (248)
Q Consensus 146 ~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~ 222 (248)
..|+|+.-++....+ +.+|..||++.-+.++++||+ ..|.|..|+.++...++...+++-.+.++.. +.+++..+.
T Consensus 238 iVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~ 316 (368)
T COG1223 238 IVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTK 316 (368)
T ss_pred HHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhC
Confidence 467888888766443 568888999999999999999 6899999999999999999998887777655 777776664
Q ss_pred c-cHHHH
Q 025758 223 R-SLRRA 228 (248)
Q Consensus 223 g-~~r~~ 228 (248)
| +.|++
T Consensus 317 g~SgRdi 323 (368)
T COG1223 317 GMSGRDI 323 (368)
T ss_pred CCCchhH
Confidence 4 34444
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=99.84 E-value=2e-19 Score=144.57 Aligned_cols=184 Identities=17% Similarity=0.274 Sum_probs=130.0
Q ss_pred CCccccc-c-cHHHHHHHHHHhhc---CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 10 KTLDQVI-V-HQDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 10 ~~~~~li-g-~~~~~~~l~~~~~~---~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
-||++++ | +..+.+.+.++... +..+.++|+||+|+|||+|+++++.++.......
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v------------------- 76 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPA------------------- 76 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE-------------------
Confidence 4788887 3 44455666666542 2234589999999999999999998663221110
Q ss_pred ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCC-e
Q 025758 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSAS-C 161 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~-~ 161 (248)
+.+...+.. .. ....++.+. +.++++||+++.+. +..+..|+++++....+ .
T Consensus 77 ----------~y~~~~~~~-~~---~~~~~~~~~-----------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~ 131 (234)
T PRK05642 77 ----------VYLPLAELL-DR---GPELLDNLE-----------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR 131 (234)
T ss_pred ----------EEeeHHHHH-hh---hHHHHHhhh-----------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCC
Confidence 011110000 00 111122221 34589999998764 45577899999876543 4
Q ss_pred eEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758 162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (248)
Q Consensus 162 ~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 234 (248)
.+|++++.+. ...++++||+ .++.+.+|+.+++..+++..+...++.++++++++|++.++||+|.+.+.|+.
T Consensus 132 ~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 132 RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5666666543 3478999999 78999999999999999988888899999999999999999999999999988
Q ss_pred Hhh
Q 025758 235 CRV 237 (248)
Q Consensus 235 ~~~ 237 (248)
+..
T Consensus 212 l~~ 214 (234)
T PRK05642 212 LDQ 214 (234)
T ss_pred HHH
Confidence 864
No 92
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.83 E-value=1.8e-19 Score=143.23 Aligned_cols=196 Identities=21% Similarity=0.315 Sum_probs=128.2
Q ss_pred CCccccc-c--cHHHHHHHHHHhhcCCC--CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 10 KTLDQVI-V--HQDIAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 10 ~~~~~li-g--~~~~~~~l~~~~~~~~~--~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
-||++++ | ++.+.+........... ..++|+||+|+|||+|+++++.++.....+..
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~------------------ 66 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKR------------------ 66 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-------------------
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcccccc------------------
Confidence 5788886 4 66677777766654332 34899999999999999999997743221110
Q ss_pred ceeeecccceeeeCC-CCcCcchhHHHHHHHHHHHhcCCCcCC-CCCCeeEEEEeCCCCCCHH--HHHHHHHHHHHhcCC
Q 025758 85 ELTTLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTK-GKRGFKVLVLNEVDKLSRE--AQHSLRRTMEKYSAS 160 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~viiiDE~d~l~~~--~~~~ll~~le~~~~~ 160 (248)
+.|.. ... ..+....+.......+. .-...++++||+++.+... .+..|+++++.....
T Consensus 67 ----------v~y~~~~~f-------~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~ 129 (219)
T PF00308_consen 67 ----------VVYLSAEEF-------IREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES 129 (219)
T ss_dssp ----------EEEEEHHHH-------HHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT
T ss_pred ----------ceeecHHHH-------HHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh
Confidence 11111 000 01111111100000000 0125679999999888643 488999999987443
Q ss_pred -eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758 161 -CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232 (248)
Q Consensus 161 -~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 232 (248)
..+|++++.++ .+.+.++||+ .++.+.+|+.+....++++.+...++.++++++++|++...+|+|.+...|
T Consensus 130 ~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 130 GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 56788876553 4778999998 589999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcc
Q 025758 233 ETCRVQQL 240 (248)
Q Consensus 233 ~~~~~~~~ 240 (248)
+.+...++
T Consensus 210 ~~l~~~~~ 217 (219)
T PF00308_consen 210 NRLDAYAQ 217 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88876543
No 93
>PRK09087 hypothetical protein; Validated
Probab=99.83 E-value=4.6e-19 Score=141.44 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=127.2
Q ss_pred CCcccccc---cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce
Q 025758 10 KTLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (248)
Q Consensus 10 ~~~~~lig---~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (248)
-+|++++. +..+...+.++. .+..+.++|+||+|+|||||+++++... ..
T Consensus 18 ~~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~---~~----------------------- 70 (226)
T PRK09087 18 YGRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS---DA----------------------- 70 (226)
T ss_pred CChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc---CC-----------------------
Confidence 37899985 666888777765 3444559999999999999999999742 10
Q ss_pred eeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC-eeEEE
Q 025758 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS-CRLIL 165 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~-~~~Il 165 (248)
..+..... ..+.+..+. ..+++|||++.+. ..+..|+++++..... ..+|+
T Consensus 71 --------~~i~~~~~-------~~~~~~~~~------------~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 71 --------LLIHPNEI-------GSDAANAAA------------EGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred --------EEecHHHc-------chHHHHhhh------------cCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEE
Confidence 00111000 011111111 1389999998774 3467799999876553 45666
Q ss_pred EecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758 166 CCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 166 ~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 236 (248)
+++.+. ...++++||+ .++.+.+|+.+.+..++++.+..+++.++++++++|++++.|++|.++..|+.+.
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666543 3578999999 8999999999999999999999999999999999999999999999998776665
No 94
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.82 E-value=4.4e-19 Score=159.96 Aligned_cols=216 Identities=12% Similarity=0.151 Sum_probs=137.2
Q ss_pred ccCCCCCcccccccHHHHHHHHHHh----hcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCC-------cccceecccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLV----TEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKT 72 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~----~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~-------~~~~~~~~~~ 72 (248)
.-|.| +.|.+.+.-.+.|...+ ......+ ++++|+||||||++++.+.+.+.... ...+.++|..
T Consensus 750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 45778 66778777666555544 3333334 57999999999999999998774221 1112232221
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHH
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~ 152 (248)
+. .+ ..........+.-.....+......+...+..... ......||+|||+|.|....+..|+.
T Consensus 827 Ls--tp------~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k-------~~r~v~IIILDEID~L~kK~QDVLYn 891 (1164)
T PTZ00112 827 VV--HP------NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK-------DNRNVSILIIDEIDYLITKTQKVLFT 891 (1164)
T ss_pred cC--CH------HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc-------ccccceEEEeehHhhhCccHHHHHHH
Confidence 11 00 00000000111001111122222222222322211 12345699999999998767788888
Q ss_pred HHHHhcC---CeeEEEEecCC---CcccHHHhhhhh--eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---Hc
Q 025758 153 TMEKYSA---SCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---KS 221 (248)
Q Consensus 153 ~le~~~~---~~~~Il~t~~~---~~~~~~l~sR~~--~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~---~~ 221 (248)
+++.+.. ...+|.++|.. ..+.+.++||+. .+.|+||+.+++.+||..++....-.+++++++++++ ..
T Consensus 892 LFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 892 LFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV 971 (1164)
T ss_pred HHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence 8876532 24577778764 357789999984 5999999999999999999987555689999999998 66
Q ss_pred cccHHHHHHHHHHHhhh
Q 025758 222 NRSLRRAILSFETCRVQ 238 (248)
Q Consensus 222 ~g~~r~~~~~l~~~~~~ 238 (248)
.||+|.|+++|..+...
T Consensus 972 SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 972 SGDIRKALQICRKAFEN 988 (1164)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 79999999999998864
No 95
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.82 E-value=1.1e-18 Score=149.55 Aligned_cols=225 Identities=18% Similarity=0.242 Sum_probs=133.1
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhh----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+-..|.| ++++|.+..++.|..++. ++..++++++||+|+|||++++.++..+.....+. ......+..+|.
T Consensus 8 l~~~~~p---~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~-~~~~~~v~in~~ 83 (365)
T TIGR02928 8 LEPDYVP---DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDR-DVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCC---CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhcc-CCceEEEEEECC
Confidence 4568999 578998888877777664 33445699999999999999999998774321110 000000111111
Q ss_pred Ccccccceeeeccccee---eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHH
Q 025758 79 SRNIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le 155 (248)
.......+ .......+ +...+..+...........+.+.. .+.+.|++|||+|.+.......+..+++
T Consensus 84 ~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlvIDE~d~L~~~~~~~L~~l~~ 154 (365)
T TIGR02928 84 ILDTLYQV-LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNE--------RGDSLIIVLDEIDYLVGDDDDLLYQLSR 154 (365)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEECchhhhccCCcHHHHhHhc
Confidence 11100000 00000001 111111111111222222332221 2356799999999884222233333332
Q ss_pred H-----hc-CCeeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---
Q 025758 156 K-----YS-ASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE--- 219 (248)
Q Consensus 156 ~-----~~-~~~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~--~~~~~~~~~~~~l~~--- 219 (248)
- .+ ....+|+++|++. .+.+.+.+|+ ..+.|++++.+++.+++..++.. .+-.++++++++++.
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 2 22 3457888998875 4777888888 57999999999999999999863 233477888777654
Q ss_pred HccccHHHHHHHHHHHhhhcc
Q 025758 220 KSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 220 ~~~g~~r~~~~~l~~~~~~~~ 240 (248)
.+.|++|.++++++.+...+.
T Consensus 235 ~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 235 QEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred HhcCCHHHHHHHHHHHHHHHH
Confidence 446999999999988775443
No 96
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-18 Score=142.61 Aligned_cols=195 Identities=19% Similarity=0.284 Sum_probs=137.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
+++-.-.|.+|+=|.++.++.++..++- ..+.++|||||||||||-+|+++|.+. ++.-+++.|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvg 218 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATFIRVVG 218 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceEEEecc
Confidence 4455567889988999999999988741 123349999999999999999999854 333333333
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC--------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------- 142 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-------- 142 (248)
..+. -.|..+ +...++++|.... +..|.||||||+|.+
T Consensus 219 SElV--------------------qKYiGE-----GaRlVRelF~lAr---------ekaPsIIFiDEIDAIg~kR~d~~ 264 (406)
T COG1222 219 SELV--------------------QKYIGE-----GARLVRELFELAR---------EKAPSIIFIDEIDAIGAKRFDSG 264 (406)
T ss_pred HHHH--------------------HHHhcc-----chHHHHHHHHHHh---------hcCCeEEEEechhhhhcccccCC
Confidence 2211 011111 1223666666444 346779999999987
Q ss_pred ---CHHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 143 ---SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 143 ---~~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
+.+.|..++++|.+. ..++++|+.||.++-+.|+|..-. +.|.|+.|+.+...+|++-+..+= ++.+
T Consensus 265 t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~ 342 (406)
T COG1222 265 TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLAD 342 (406)
T ss_pred CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc--cCcc
Confidence 356788899998764 567899999999999999998754 689999999999999998766543 3334
Q ss_pred HH-HHHHHHHccc-cHHHHHHHHHHHhh
Q 025758 212 GF-ATRLAEKSNR-SLRRAILSFETCRV 237 (248)
Q Consensus 212 ~~-~~~l~~~~~g-~~r~~~~~l~~~~~ 237 (248)
++ ++.|++.++| +..++-..+..+..
T Consensus 343 dvd~e~la~~~~g~sGAdlkaictEAGm 370 (406)
T COG1222 343 DVDLELLARLTEGFSGADLKAICTEAGM 370 (406)
T ss_pred CcCHHHHHHhcCCCchHHHHHHHHHHhH
Confidence 33 7777777655 45555555555543
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.81 E-value=1.1e-18 Score=151.72 Aligned_cols=191 Identities=14% Similarity=0.204 Sum_probs=133.1
Q ss_pred CCccccc-c--cHHHHHHHHHHhhc-----CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 10 KTLDQVI-V--HQDIAQNLKKLVTE-----QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 10 ~~~~~li-g--~~~~~~~l~~~~~~-----~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
.||++++ | +..+...+..+... +. ...++|+||+|+|||+|+++++..+.......
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v--------------- 172 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKI--------------- 172 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCE---------------
Confidence 4788887 4 44455666666542 12 23499999999999999999999874432111
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHH-HHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHh
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQ-EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKY 157 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~ 157 (248)
+.+..+.....-..... .....+... ....++++|||++.+. ...+..|+++++..
T Consensus 173 --------------~yi~~~~f~~~~~~~l~~~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l 231 (445)
T PRK12422 173 --------------LYVRSELFTEHLVSAIRSGEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSL 231 (445)
T ss_pred --------------EEeeHHHHHHHHHHHHhcchHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHH
Confidence 11111000000000000 001111111 1256799999998875 35678899998765
Q ss_pred c-CCeeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHH
Q 025758 158 S-ASCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229 (248)
Q Consensus 158 ~-~~~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~ 229 (248)
. .+..+|++++.+. .+.+.++||+ ..+.+.+|+.+++..+|++.+...++.++++++++|+....+|+|.+.
T Consensus 232 ~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~ 311 (445)
T PRK12422 232 HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLL 311 (445)
T ss_pred HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 3 3456777777653 4678999999 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 025758 230 LSFETCR 236 (248)
Q Consensus 230 ~~l~~~~ 236 (248)
+.|+.++
T Consensus 312 g~l~~l~ 318 (445)
T PRK12422 312 HALTLLA 318 (445)
T ss_pred HHHHHHH
Confidence 9999885
No 98
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.4e-19 Score=156.18 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=132.4
Q ss_pred cccccHHHHHHHHHHhh------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 14 QVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
|.+|.+++++.+..++. .-+.|-+||+||||+|||++++.||+.+ ....-.+.++|..-.-....+++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al-~RkfvR~sLGGvrDEAEIRGHRR----- 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL-GRKFVRISLGGVRDEAEIRGHRR----- 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-CCCEEEEecCccccHHHhccccc-----
Confidence 45789999998887763 2223559999999999999999999976 44444445555432212222222
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH----HHHHHHHHHHh------
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------ 157 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~ll~~le~~------ 157 (248)
.|..+-+|. +.+.++... ..++|++|||+|.|+.+. ..+||++++--
T Consensus 398 --------TYIGamPGr-----IiQ~mkka~----------~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~ 454 (782)
T COG0466 398 --------TYIGAMPGK-----IIQGMKKAG----------VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS 454 (782)
T ss_pred --------cccccCChH-----HHHHHHHhC----------CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchh
Confidence 122222221 222233222 245699999999996432 35777777511
Q ss_pred ---------cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHH
Q 025758 158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----K-----EGLQLPSGFATRLA 218 (248)
Q Consensus 158 ---------~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~-----~-----~~~~~~~~~~~~l~ 218 (248)
-+++.||+|+|..+.++.+|++|+.+|.+..|+.++-..|.++++- . ..+.++++++..|+
T Consensus 455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred hccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 1335599999999999999999999999999999999999988633 2 25568899999999
Q ss_pred HHcccc--HHHHHHHHHHHhh
Q 025758 219 EKSNRS--LRRAILSFETCRV 237 (248)
Q Consensus 219 ~~~~g~--~r~~~~~l~~~~~ 237 (248)
+...+. .|.+-..+..+|.
T Consensus 535 ~~YTREAGVR~LeR~i~ki~R 555 (782)
T COG0466 535 RYYTREAGVRNLEREIAKICR 555 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHHH
Confidence 877432 6666666665553
No 99
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.80 E-value=1.8e-18 Score=149.37 Aligned_cols=202 Identities=17% Similarity=0.245 Sum_probs=130.0
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~ 67 (248)
+++++++.+.+|+|+.|.+..++.+..++.- ....+++|+||||||||++|+++|+.+..+ .+.
T Consensus 171 ~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~---fi~ 247 (438)
T PTZ00361 171 VMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT---FLR 247 (438)
T ss_pred hcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC---EEE
Confidence 4678999999999999999999888877631 122349999999999999999999965221 111
Q ss_pred ecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----
Q 025758 68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---- 143 (248)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---- 143 (248)
+.+..+ .....+ .....+.+.+.... ...+.|++|||+|.+.
T Consensus 248 V~~seL------------------------~~k~~G-e~~~~vr~lF~~A~---------~~~P~ILfIDEID~l~~kR~ 293 (438)
T PTZ00361 248 VVGSEL------------------------IQKYLG-DGPKLVRELFRVAE---------ENAPSIVFIDEIDAIGTKRY 293 (438)
T ss_pred Eecchh------------------------hhhhcc-hHHHHHHHHHHHHH---------hCCCcEEeHHHHHHHhccCC
Confidence 111000 000000 01112344444332 2356799999998652
Q ss_pred -------HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCC
Q 025758 144 -------REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQ 208 (248)
Q Consensus 144 -------~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~ 208 (248)
...+..++.++... ..+..+|++||++..+.+++.+ |+ ..|.|++|+.+++..|+...+.+..+.
T Consensus 294 ~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~ 373 (438)
T PTZ00361 294 DATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA 373 (438)
T ss_pred CCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC
Confidence 22344455555432 3356799999999999999874 66 689999999999999999887665543
Q ss_pred CCHHHHHHHHHHcc-ccHHHHHHHHHHHhhhcc
Q 025758 209 LPSGFATRLAEKSN-RSLRRAILSFETCRVQQL 240 (248)
Q Consensus 209 ~~~~~~~~l~~~~~-g~~r~~~~~l~~~~~~~~ 240 (248)
-+ -.+..++..+. -+..++.++++.++..+.
T Consensus 374 ~d-vdl~~la~~t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 374 ED-VDLEEFIMAKDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred cC-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 22 23555655543 345555556666654443
No 100
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.79 E-value=4.4e-18 Score=158.42 Aligned_cols=200 Identities=15% Similarity=0.282 Sum_probs=138.4
Q ss_pred ccccccHHHHHHHHHHhhc--------CCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 13 DQVIVHQDIAQNLKKLVTE--------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~--------~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
+.++||+.+++.+..++.. +++.. ++|.||+|||||.+|+++|..++.....-+.+++..|.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~----- 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT----- 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhh-----
Confidence 4568999999988887631 22223 899999999999999999998865444444454433321110
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----- 158 (248)
....++-.+...|......+.+.++ .+.+.|++|||++.+++...+.|+.++++..
T Consensus 641 -------~~~l~g~~~gyvg~~~~g~L~~~v~------------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 641 -------VSRLKGSPPGYVGYGEGGVLTEAVR------------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred -------hccccCCCCCcccccccchHHHHHH------------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCC
Confidence 0111221121122211112222222 2255799999999999999999999998764
Q ss_pred ------CCeeEEEEecCCC-----------------------------cccHHHhhhhheeeecCCCHHHHHHHHHHHHH
Q 025758 159 ------ASCRLILCCNSSS-----------------------------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK 203 (248)
Q Consensus 159 ------~~~~~Il~t~~~~-----------------------------~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~ 203 (248)
.++.||+|||-.. .+.|.+.+|+.++.|.+++.+++.+++...+.
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHH
Confidence 5677888887421 25678889999999999999999999988765
Q ss_pred H-------c-C--CCCCHHHHHHHHHHccc---cHHHHHHHHHHHh
Q 025758 204 K-------E-G--LQLPSGFATRLAEKSNR---SLRRAILSFETCR 236 (248)
Q Consensus 204 ~-------~-~--~~~~~~~~~~l~~~~~g---~~r~~~~~l~~~~ 236 (248)
+ . + +.++++++++|++.+.+ .+|.+.+.++...
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 3 1 4 36889999999999876 6888888887644
No 101
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.79 E-value=1.7e-17 Score=143.70 Aligned_cols=215 Identities=16% Similarity=0.233 Sum_probs=130.2
Q ss_pred cCCCCCcccccccHHHHHHHHHHh----hcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC--cccceecccceeeccCC
Q 025758 6 KYRPKTLDQVIVHQDIAQNLKKLV----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGS 79 (248)
Q Consensus 6 ky~p~~~~~lig~~~~~~~l~~~~----~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~--~~~~~~~~~~~~~~~~~ 79 (248)
.|.| +.++|.+...+.|...+ .++..++++++||+|+|||++++.+++.+.... ...+.+++. .
T Consensus 26 ~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~-------~ 95 (394)
T PRK00411 26 DYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ-------I 95 (394)
T ss_pred CCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC-------c
Confidence 4555 55778777666666554 334455699999999999999999998774332 112222221 1
Q ss_pred cccccceeeecccceeee-CCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----HHHHHHHHHHH
Q 025758 80 RNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTM 154 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----~~~~~~ll~~l 154 (248)
......+ .......+.- .....+.. ..+.+..+..... ..+.+.||+|||+|.+. .+....|++.+
T Consensus 96 ~~~~~~~-~~~i~~~l~~~~~~~~~~~----~~~~~~~~~~~l~----~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~ 166 (394)
T PRK00411 96 DRTRYAI-FSEIARQLFGHPPPSSGLS----FDELFDKIAEYLD----ERDRVLIVALDDINYLFEKEGNDVLYSLLRAH 166 (394)
T ss_pred CCCHHHH-HHHHHHHhcCCCCCCCCCC----HHHHHHHHHHHHH----hcCCEEEEEECCHhHhhccCCchHHHHHHHhh
Confidence 1000000 0000000100 11111111 1222222221110 12356799999999875 23344555555
Q ss_pred HHhcC-CeeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---cc
Q 025758 155 EKYSA-SCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS---NR 223 (248)
Q Consensus 155 e~~~~-~~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~~---~g 223 (248)
+.... ...+|+++++.. .+.+.+.+|+ ..+.|++++.+++.++++.++... .-.+++++++.+++.+ .|
T Consensus 167 ~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 167 EEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred hccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 54333 356888888764 4567778887 579999999999999999988653 2257899999998777 78
Q ss_pred cHHHHHHHHHHHhhhc
Q 025758 224 SLRRAILSFETCRVQQ 239 (248)
Q Consensus 224 ~~r~~~~~l~~~~~~~ 239 (248)
++|.+++++..+...+
T Consensus 247 d~r~a~~ll~~a~~~a 262 (394)
T PRK00411 247 DARVAIDLLRRAGLIA 262 (394)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999998766444
No 102
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=7e-18 Score=147.05 Aligned_cols=188 Identities=19% Similarity=0.296 Sum_probs=129.7
Q ss_pred CCccccc-c--cHHHHHHHHHHhhc-CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758 10 KTLDQVI-V--HQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (248)
Q Consensus 10 ~~~~~li-g--~~~~~~~l~~~~~~-~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (248)
.||++++ | +..+......+..+ +....++|+||+|+|||+|+++++..+.....+. .+
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~-~v----------------- 163 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RV----------------- 163 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCC-eE-----------------
Confidence 4788887 4 44455666666553 3334499999999999999999999774322110 00
Q ss_pred eeeecccceeeeCCCCcCcchhHHHHHH--------HHHHHhcCCCcCCCCCCeeEEEEeCCCCC-C-HHHHHHHHHHHH
Q 025758 86 LTTLSSANHVELSPSDAGFQDRYVVQEV--------IKEMAKNRPIDTKGKRGFKVLVLNEVDKL-S-REAQHSLRRTME 155 (248)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~-~~~~~~ll~~le 155 (248)
+.+..++. ..+. +..+.... ...+++++|||++.+ + ...+..|+++++
T Consensus 164 ---------~yi~~~~f-------~~~~~~~~~~~~~~~f~~~~------~~~~dvLlIDDi~~l~~~~~~q~elf~~~n 221 (440)
T PRK14088 164 ---------MYITSEKF-------LNDLVDSMKEGKLNEFREKY------RKKVDVLLIDDVQFLIGKTGVQTELFHTFN 221 (440)
T ss_pred ---------EEEEHHHH-------HHHHHHHHhcccHHHHHHHH------HhcCCEEEEechhhhcCcHHHHHHHHHHHH
Confidence 01111000 0011 11111110 124679999999865 3 335678889988
Q ss_pred HhcCC-eeEEEEecCCC----cccHHHhhhhh---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHH
Q 025758 156 KYSAS-CRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR 227 (248)
Q Consensus 156 ~~~~~-~~~Il~t~~~~----~~~~~l~sR~~---~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~ 227 (248)
..... ..+|+++++.. .+.+.+.||+. ++.+.+|+.+.+..++++.+..+++.++++++++|++.+.||+|.
T Consensus 222 ~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 222 ELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHH
Confidence 76443 45666665443 36678899985 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 025758 228 AILSFETCRV 237 (248)
Q Consensus 228 ~~~~l~~~~~ 237 (248)
+...|..+..
T Consensus 302 L~g~l~~l~~ 311 (440)
T PRK14088 302 LRGAIIKLLV 311 (440)
T ss_pred HHHHHHHHHH
Confidence 9888877753
No 103
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=3.2e-18 Score=151.88 Aligned_cols=196 Identities=19% Similarity=0.281 Sum_probs=127.8
Q ss_pred cccCCCCCcccccccHHHHHHHHHHhh-----------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
.+.....+|+|++|++.+++.+..++. ..+.+ +++|+||||||||++|+++|+....+- +.+++.
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~---~~i~~~ 122 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---FSISGS 122 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe---eeccHH
Confidence 445567899999999998887776553 12333 499999999999999999998652211 111110
Q ss_pred ceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-------
Q 025758 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------- 144 (248)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------- 144 (248)
.+ ... ..+ .....+.+.+..... ..|.||+|||+|.+..
T Consensus 123 ~~---------------------~~~---~~g-~~~~~l~~~f~~a~~---------~~p~Il~iDEid~l~~~r~~~~~ 168 (495)
T TIGR01241 123 DF---------------------VEM---FVG-VGASRVRDLFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLG 168 (495)
T ss_pred HH---------------------HHH---Hhc-ccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhccccCcC
Confidence 00 000 000 011224444444332 2567999999987642
Q ss_pred -------HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 025758 145 -------EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (248)
Q Consensus 145 -------~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~ 212 (248)
...+.|+..++.... +..+|.+||++..+.+++.+ |+ ..+.++.|+.++..+++...+.+.++. ++.
T Consensus 169 ~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~ 247 (495)
T TIGR01241 169 GGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDV 247 (495)
T ss_pred CccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cch
Confidence 123445555554432 35678889999999999987 55 689999999999999999888765543 344
Q ss_pred HHHHHHHHccc-cHHHHHHHHHHHhh
Q 025758 213 FATRLAEKSNR-SLRRAILSFETCRV 237 (248)
Q Consensus 213 ~~~~l~~~~~g-~~r~~~~~l~~~~~ 237 (248)
.+..+++.+.| +.+++.++++.+..
T Consensus 248 ~l~~la~~t~G~sgadl~~l~~eA~~ 273 (495)
T TIGR01241 248 DLKAVARRTPGFSGADLANLLNEAAL 273 (495)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 57788887765 55666666665543
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.79 E-value=3.8e-18 Score=149.80 Aligned_cols=190 Identities=20% Similarity=0.327 Sum_probs=131.2
Q ss_pred CCccccc-c--cHHHHHHHHHHhhcC-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 10 KTLDQVI-V--HQDIAQNLKKLVTEQ-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 10 ~~~~~li-g--~~~~~~~l~~~~~~~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
.+|++++ | +..++.....+.... .. ..++|+||+|+|||+|+++++..+.....+. .+
T Consensus 119 ~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~-~v---------------- 181 (450)
T PRK00149 119 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA-KV---------------- 181 (450)
T ss_pred CcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eE----------------
Confidence 3788875 3 555777777776542 22 3499999999999999999999874322110 00
Q ss_pred ceeeecccceeeeCCCCcC--cch---hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--HHHHHHHHHHHHh
Q 025758 85 ELTTLSSANHVELSPSDAG--FQD---RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY 157 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~ll~~le~~ 157 (248)
+.+...... ... .....+..+.+ ....+|+|||++.+.. ..+..|+.+++..
T Consensus 182 ----------~yi~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l 240 (450)
T PRK00149 182 ----------VYVTSEKFTNDFVNALRNNTMEEFKEKY-----------RSVDVLLIDDIQFLAGKERTQEEFFHTFNAL 240 (450)
T ss_pred ----------EEEEHHHHHHHHHHHHHcCcHHHHHHHH-----------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHH
Confidence 011110000 000 00011111111 1456999999987743 3567889988876
Q ss_pred cCC-eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHH
Q 025758 158 SAS-CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229 (248)
Q Consensus 158 ~~~-~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~ 229 (248)
..+ ..+|++++.+. .+.+.++||+ .++.|.+|+.+.+..++++.+...++.++++++++|++.+.||+|.+.
T Consensus 241 ~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 241 HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHH
Confidence 433 35677776654 2667899999 589999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhh
Q 025758 230 LSFETCRV 237 (248)
Q Consensus 230 ~~l~~~~~ 237 (248)
..|+.+..
T Consensus 321 ~~l~~l~~ 328 (450)
T PRK00149 321 GALNRLIA 328 (450)
T ss_pred HHHHHHHH
Confidence 87777664
No 105
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.79 E-value=1.1e-17 Score=136.58 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=98.2
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC------------CcccHHHhhhhheeeecCCCHHHHHHH
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIVKV 197 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~------------~~~~~~l~sR~~~i~~~~~~~~~~~~i 197 (248)
=|.|+||||+++||-++...|.+.+|+.- .+.+|+.||.- ..++.++.+|..+|.-.||+.++++.|
T Consensus 291 VpGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireI 369 (450)
T COG1224 291 VPGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREI 369 (450)
T ss_pred ecceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHH
Confidence 37799999999999999999999999743 25677777743 479999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhcccccCC
Q 025758 198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQLRFTMP 245 (248)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~~~~~ 245 (248)
+..++..+++.+++++++++++.. ..++|.++++|.-+...+.+..++
T Consensus 370 i~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~ 418 (450)
T COG1224 370 IRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK 418 (450)
T ss_pred HHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC
Confidence 999999999999999999999886 467999999998655555444333
No 106
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.78 E-value=7.6e-18 Score=139.37 Aligned_cols=106 Identities=28% Similarity=0.300 Sum_probs=82.6
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC------------CcccHHHhhhhheeeecCCCHHHHHHH
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIVKV 197 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~------------~~~~~~l~sR~~~i~~~~~~~~~~~~i 197 (248)
-|.|+||||+++||.++...|.+++|..- .+.+|++||+. ..++.+|.+||.+|...||+.+++.++
T Consensus 278 vpGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~I 356 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQI 356 (398)
T ss_dssp EE-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHH
T ss_pred ecceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHH
Confidence 57899999999999999999999999643 35788888844 468889999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHh
Q 025758 198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCR 236 (248)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 236 (248)
+.-+++.|++.+++++++.+.+.. ..++|.++++|.-+.
T Consensus 357 l~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 357 LKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 999999999999999999999776 568999999987654
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=1.8e-17 Score=144.63 Aligned_cols=195 Identities=14% Similarity=0.218 Sum_probs=134.5
Q ss_pred CCCcccccc---cHHHHHHHHHHhhc-CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 9 PKTLDQVIV---HQDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 9 p~~~~~lig---~~~~~~~l~~~~~~-~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
+.||++++. +..+......+... +. ...++|+|++|+|||+|+++++..+.....+. ++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~-~v--------------- 174 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDL-KV--------------- 174 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCC-eE---------------
Confidence 468888874 44466666666653 22 23499999999999999999998764322111 00
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHH---HHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhc
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQ---EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS 158 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~ 158 (248)
+.+..+.....-..... +.+..+... ....++++|||++.+. ...+..|+++++...
T Consensus 175 -----------~yv~~~~f~~~~~~~l~~~~~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~ 236 (450)
T PRK14087 175 -----------SYMSGDEFARKAVDILQKTHKEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI 236 (450)
T ss_pred -----------EEEEHHHHHHHHHHHHHHhhhHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 11111110000000000 112222221 1256799999998876 567889999998764
Q ss_pred CC-eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccccHHHH
Q 025758 159 AS-CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLRRA 228 (248)
Q Consensus 159 ~~-~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~ 228 (248)
.. ..+|++++.++ .+.+.+.||+ .++.+.+|+.+++..+|++.+...++ .++++++++|+..+.||+|.+
T Consensus 237 ~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L 316 (450)
T PRK14087 237 ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKI 316 (450)
T ss_pred HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHH
Confidence 44 35777777664 3567889998 58999999999999999999998875 699999999999999999999
Q ss_pred HHHHHHHhh
Q 025758 229 ILSFETCRV 237 (248)
Q Consensus 229 ~~~l~~~~~ 237 (248)
.+.|+.+..
T Consensus 317 ~gaL~~l~~ 325 (450)
T PRK14087 317 KGSVSRLNF 325 (450)
T ss_pred HHHHHHHHH
Confidence 999988764
No 108
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=2.5e-17 Score=128.95 Aligned_cols=176 Identities=12% Similarity=0.136 Sum_probs=129.3
Q ss_pred HHHHHHhhcCCCCe-eEEECCCC-CCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 23 QNLKKLVTEQDCPH-LLFYGPPG-SGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 23 ~~l~~~~~~~~~~~-ill~Gp~G-~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
..|.+.++.+++.| ++|.|.++ +||..++..++..++|.. +. . ..+++...+.++
T Consensus 3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~---i~---------~-----------~~HPD~~~I~pe 59 (263)
T PRK06581 3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNS---IP---------L-----------ENNPDYHFIARE 59 (263)
T ss_pred HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccC---cc---------c-----------CCCCCEEEEecc
Confidence 46778889999998 99999998 999999999999886652 11 1 112333344443
Q ss_pred C-----cCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccH
Q 025758 101 D-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (248)
Q Consensus 101 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~ 175 (248)
. ........++++.+.+.. .|. .++.+|++||++|.|..++.|+|+|++|+|+.++.||++|+++..+++
T Consensus 60 ~~~~~~~~~I~IdqIReL~~~l~~-~p~----~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLp 134 (263)
T PRK06581 60 TSATSNAKNISIEQIRKLQDFLSK-TSA----ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIIS 134 (263)
T ss_pred ccccccCCcccHHHHHHHHHHHhh-Ccc----cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCch
Confidence 2 123344556665554443 332 568999999999999999999999999999999999999999999999
Q ss_pred HHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHH
Q 025758 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229 (248)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~ 229 (248)
+++|||+.+.|+.|......++....+.. ..+...++.|.+...-|....+
T Consensus 135 TIrSRCq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~ 185 (263)
T PRK06581 135 TIRSRCFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWL 185 (263)
T ss_pred hHhhceEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHH
Confidence 99999999999999987777766543322 2334557777666544433333
No 109
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.1e-18 Score=152.96 Aligned_cols=200 Identities=18% Similarity=0.325 Sum_probs=143.8
Q ss_pred ccccccHHHHHHHHHHhh--------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 13 DQVIVHQDIAQNLKKLVT--------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~--------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
+.++||++++..+.+.+. +.++. .++|.||+|+|||.||+.+|..|+.....-++++...|...+...+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSr-- 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSR-- 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHH--
Confidence 356899999999998874 22333 3999999999999999999999998888888888876653332222
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----- 158 (248)
.++-.|..-|...+....+.++ .+.+.|+++||++..+|+..+.|++++++..
T Consensus 569 ----------LIGaPPGYVGyeeGG~LTEaVR------------r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 569 ----------LIGAPPGYVGYEEGGQLTEAVR------------RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred ----------HhCCCCCCceeccccchhHhhh------------cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC
Confidence 2444444444444333444333 3457799999999999999999999998753
Q ss_pred ------CCeeEEEEecCCC----------------------------cccHHHhhhhh-eeeecCCCHHHHHHHHHHHHH
Q 025758 159 ------ASCRLILCCNSSS----------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK 203 (248)
Q Consensus 159 ------~~~~~Il~t~~~~----------------------------~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~ 203 (248)
+|+.+|+|||--. .+.|.++.|+- +|.|.+++.+.+.+|+...+.
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHH
Confidence 4566888887331 24556667774 999999999999998887655
Q ss_pred H-------cCC--CCCHHHHHHHHHHcc---ccHHHHHHHHHHHh
Q 025758 204 K-------EGL--QLPSGFATRLAEKSN---RSLRRAILSFETCR 236 (248)
Q Consensus 204 ~-------~~~--~~~~~~~~~l~~~~~---g~~r~~~~~l~~~~ 236 (248)
+ .++ .+++++.++|++.+. -.+|-+.+.++.-.
T Consensus 707 ~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 707 RLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 3 244 588999999998863 23566655555443
No 110
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.5e-18 Score=149.45 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=133.0
Q ss_pred ccccccHHHHHHHHHHhhc----CCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce
Q 025758 13 DQVIVHQDIAQNLKKLVTE----QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~----~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (248)
+|.+|-..+++.+..++.= |... .+||+||||+|||++++.||+.|++ .+-.+.++|..-......+++
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-kFfRfSvGG~tDvAeIkGHRR---- 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR-KFFRFSVGGMTDVAEIKGHRR---- 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-ceEEEeccccccHHhhcccce----
Confidence 3557888888888877752 3333 3999999999999999999997744 333344444322211111211
Q ss_pred eeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH----HHHHHHHHHHH------
Q 025758 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTMEK------ 156 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----~~~~ll~~le~------ 156 (248)
.|...-+| .+.++++.... .+++++|||+|.++.. =..+|+++++-
T Consensus 486 ---------TYVGAMPG-----kiIq~LK~v~t----------~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanF 541 (906)
T KOG2004|consen 486 ---------TYVGAMPG-----KIIQCLKKVKT----------ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANF 541 (906)
T ss_pred ---------eeeccCCh-----HHHHHHHhhCC----------CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccch
Confidence 22222222 13344554433 5569999999998632 14567777752
Q ss_pred -------hc--CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHH
Q 025758 157 -------YS--ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----------KEGLQLPSGFATRL 217 (248)
Q Consensus 157 -------~~--~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~----------~~~~~~~~~~~~~l 217 (248)
+- +.+.||+|+|..+.++++|++|+.+|.++.|..++-.+|....+- .+.+.+++.++..|
T Consensus 542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~l 621 (906)
T KOG2004|consen 542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLAL 621 (906)
T ss_pred hhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHH
Confidence 10 224599999999999999999999999999999999999888754 24567889998888
Q ss_pred HHHccc--cHHHHHHHHHHHhh
Q 025758 218 AEKSNR--SLRRAILSFETCRV 237 (248)
Q Consensus 218 ~~~~~g--~~r~~~~~l~~~~~ 237 (248)
++...+ ..|.+-+.++.++.
T Consensus 622 I~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 622 IERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 877643 37777777766653
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.78 E-value=5.6e-18 Score=146.96 Aligned_cols=193 Identities=19% Similarity=0.309 Sum_probs=128.7
Q ss_pred CCccccc-c--cHHHHHHHHHHhhcC-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcc--cceecccceeeccCCccc
Q 025758 10 KTLDQVI-V--HQDIAQNLKKLVTEQ-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNI 82 (248)
Q Consensus 10 ~~~~~li-g--~~~~~~~l~~~~~~~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (248)
.+|++++ | +..+...+..+.... .. ..++|+||+|+|||+++++++.++.....+ .+.+....+.
T Consensus 107 ~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~-------- 178 (405)
T TIGR00362 107 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT-------- 178 (405)
T ss_pred CcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--------
Confidence 4677754 4 444666666666542 22 238999999999999999999987432211 0011000000
Q ss_pred ccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhc-C
Q 025758 83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYS-A 159 (248)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~-~ 159 (248)
. .+... .. .....+..+.+ ...++++|||++.+.. ..+..|+++++... .
T Consensus 179 ---------~---~~~~~-~~---~~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~ 231 (405)
T TIGR00362 179 ---------N---DFVNA-LR---NNKMEEFKEKY-----------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN 231 (405)
T ss_pred ---------H---HHHHH-HH---cCCHHHHHHHH-----------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC
Confidence 0 00000 00 00011111111 1356999999987743 45678999998763 3
Q ss_pred CeeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758 160 SCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232 (248)
Q Consensus 160 ~~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 232 (248)
+..+|++++.+. .+.+.++||+ ..+.|++|+.+++..++++.+...++.++++++++|++...+|+|.+...|
T Consensus 232 ~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 232 GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 356777777654 3567899998 479999999999999999999999999999999999999999999987777
Q ss_pred HHHhh
Q 025758 233 ETCRV 237 (248)
Q Consensus 233 ~~~~~ 237 (248)
+.+..
T Consensus 312 ~~l~~ 316 (405)
T TIGR00362 312 NRLLA 316 (405)
T ss_pred HHHHH
Confidence 66654
No 112
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.77 E-value=3.1e-18 Score=158.92 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=125.2
Q ss_pred cccccHHHHHHHHHHhh------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 14 QVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
+++|++.+++.+..++. ..+.++++|+||||+|||++|+++|+.+.. ....+...+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-~~~~i~~~~~~~-------------- 385 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR-KFVRFSLGGVRD-------------- 385 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CeEEEeCCCccc--------------
Confidence 46899999999888663 123456999999999999999999997632 222221111000
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH----HHHHHHHHHHh------
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------ 157 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~ll~~le~~------ 157 (248)
.....+......+.... .+.+.+.... ....|++|||+|.+.+.. .++|+++++..
T Consensus 386 ---~~~i~g~~~~~~g~~~g-~i~~~l~~~~----------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~ 451 (775)
T TIGR00763 386 ---EAEIRGHRRTYVGAMPG-RIIQGLKKAK----------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFS 451 (775)
T ss_pred ---HHHHcCCCCceeCCCCc-hHHHHHHHhC----------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccc
Confidence 00000000000011111 1222222111 133499999999997532 47788888641
Q ss_pred ---------cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHH
Q 025758 158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----K-----EGLQLPSGFATRLA 218 (248)
Q Consensus 158 ---------~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~-----~-----~~~~~~~~~~~~l~ 218 (248)
..++.||+++|....+.+++++||.+|.|++|+.++...|+...+. . +++.++++++..|+
T Consensus 452 d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~ 531 (775)
T TIGR00763 452 DHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLI 531 (775)
T ss_pred cccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHH
Confidence 0346788999999999999999999999999999999999987652 2 24578999999999
Q ss_pred HHccc--cHHHHHHHHHHHh
Q 025758 219 EKSNR--SLRRAILSFETCR 236 (248)
Q Consensus 219 ~~~~g--~~r~~~~~l~~~~ 236 (248)
+.+.. .+|.+...++..+
T Consensus 532 ~~~~~e~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 532 KYYTREAGVRNLERQIEKIC 551 (775)
T ss_pred HhcChhcCChHHHHHHHHHH
Confidence 86542 4666655555555
No 113
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=8.7e-18 Score=155.16 Aligned_cols=203 Identities=18% Similarity=0.254 Sum_probs=141.8
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.++++.||.++++++|+++.+..+...+..+...+++|+||||+|||++++.+|..+....... ...+..
T Consensus 171 ~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~-~l~~~~--------- 240 (731)
T TIGR02639 171 DLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPE-NLKNAK--------- 240 (731)
T ss_pred hHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCch-hhcCCe---------
Confidence 3678889999999999999999888888777777899999999999999999999763321100 000000
Q ss_pred cccceeeecccceeeeCCCCc--Ccc----hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHH
Q 025758 82 IDLELTTLSSANHVELSPSDA--GFQ----DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REA 146 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~ 146 (248)
.+.+..... +.. ....+...++.+.. ..+.|+||||++.+. .+.
T Consensus 241 ------------~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~---------~~~~ILfiDEih~l~~~g~~~~~~~~~ 299 (731)
T TIGR02639 241 ------------IYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK---------EPNAILFIDEIHTIVGAGATSGGSMDA 299 (731)
T ss_pred ------------EEEecHHHHhhhccccchHHHHHHHHHHHHhc---------cCCeEEEEecHHHHhccCCCCCccHHH
Confidence 011111100 011 11123333443332 145699999999774 234
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Q 025758 147 QHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRL 217 (248)
Q Consensus 147 ~~~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l 217 (248)
.+.|...+++ ....+|.+|+..+ ...+++.+||..|.++.|+.++...+|+..... .++.++++++..+
T Consensus 300 ~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~ 377 (731)
T TIGR02639 300 SNLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAA 377 (731)
T ss_pred HHHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHH
Confidence 5566666653 3456777777532 578899999999999999999999999987765 3567899999999
Q ss_pred HHHccc---c---HHHHHHHHHHHhh
Q 025758 218 AEKSNR---S---LRRAILSFETCRV 237 (248)
Q Consensus 218 ~~~~~g---~---~r~~~~~l~~~~~ 237 (248)
+..+.+ + ++.++++++.++.
T Consensus 378 ~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 378 VELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred HHhhhcccccccCCHHHHHHHHHhhh
Confidence 877642 3 8889999998875
No 114
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.77 E-value=1.3e-17 Score=155.31 Aligned_cols=203 Identities=18% Similarity=0.251 Sum_probs=141.1
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
.+++.||.++++++|+++.++.+...+..++.++++|+||||+|||++++.+|+.+...... ..+.+.
T Consensus 177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~-~~l~~~----------- 244 (852)
T TIGR03345 177 LTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP-PALRNV----------- 244 (852)
T ss_pred HHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC-ccccCC-----------
Confidence 56788999999999999999988888878777889999999999999999999976332100 000000
Q ss_pred ccceeeecccceeeeCCCC--cCcch----hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------HHHH
Q 025758 83 DLELTTLSSANHVELSPSD--AGFQD----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH 148 (248)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~ 148 (248)
..+.+.... .+... ...+...++.... ...+.|+||||++.+.. ++.+
T Consensus 245 ----------~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~--------~~~~~ILfIDEih~l~~~g~~~~~~d~~n 306 (852)
T TIGR03345 245 ----------RLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA--------SPQPIILFIDEAHTLIGAGGQAGQGDAAN 306 (852)
T ss_pred ----------eEEEeehhhhhcccccchHHHHHHHHHHHHHHh--------cCCCeEEEEeChHHhccCCCccccccHHH
Confidence 001111111 11111 1234444554432 12567999999988742 2234
Q ss_pred HHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 025758 149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE 219 (248)
Q Consensus 149 ~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~ 219 (248)
.|...++. ....+|.+|+..+ ...++|.+||..|.+++|+.++...+|...... .++.++++++..++.
T Consensus 307 ~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ 384 (852)
T TIGR03345 307 LLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVE 384 (852)
T ss_pred HhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHH
Confidence 46666553 3466777777642 588999999999999999999999997655443 367889999999998
Q ss_pred Hccc------cHHHHHHHHHHHhh
Q 025758 220 KSNR------SLRRAILSFETCRV 237 (248)
Q Consensus 220 ~~~g------~~r~~~~~l~~~~~ 237 (248)
.+.+ -+..++++|+.++.
T Consensus 385 ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 385 LSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred HcccccccccCccHHHHHHHHHHH
Confidence 7742 47889999998775
No 115
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.2e-18 Score=143.31 Aligned_cols=193 Identities=18% Similarity=0.254 Sum_probs=133.3
Q ss_pred CCCcccccccHHHHHHHHHHhh-----------cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~-----------~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
-.+|+|+-|.+++++.|...++ .|++|. +||+||||+|||.|||++|++. +.+|.+.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-----------~VPFF~~ 368 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-----------GVPFFYA 368 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----------CCCeEec
Confidence 4679999999999999888764 577776 9999999999999999999864 3344433
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------H
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E 145 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~ 145 (248)
++..+... +++ .....+++++..... +.|.||||||+|..+. .
T Consensus 369 sGSEFdEm---------~VG--------vGArRVRdLF~aAk~---------~APcIIFIDEiDavG~kR~~~~~~y~kq 422 (752)
T KOG0734|consen 369 SGSEFDEM---------FVG--------VGARRVRDLFAAAKA---------RAPCIIFIDEIDAVGGKRNPSDQHYAKQ 422 (752)
T ss_pred cccchhhh---------hhc--------ccHHHHHHHHHHHHh---------cCCeEEEEechhhhcccCCccHHHHHHH
Confidence 43332200 011 122336666665443 4678999999998751 2
Q ss_pred HHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 025758 146 AQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-ATRLAE 219 (248)
Q Consensus 146 ~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~~~l~~ 219 (248)
..|.|+--++.+.+| .++|-.||-++.+.++|.. |+ ..|..+.|+.....+||...+.+-. +++++ ...|++
T Consensus 423 TlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~iiAR 500 (752)
T KOG0734|consen 423 TLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKIIAR 500 (752)
T ss_pred HHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhHhcc
Confidence 234455555555554 4556668888889999976 44 6899999999999999998886533 33332 566676
Q ss_pred Hccc-cHHHHHHHHHHHhhhcc
Q 025758 220 KSNR-SLRRAILSFETCRVQQL 240 (248)
Q Consensus 220 ~~~g-~~r~~~~~l~~~~~~~~ 240 (248)
.+.| +..++.|++++++..+.
T Consensus 501 GT~GFsGAdLaNlVNqAAlkAa 522 (752)
T KOG0734|consen 501 GTPGFSGADLANLVNQAALKAA 522 (752)
T ss_pred CCCCCchHHHHHHHHHHHHHHH
Confidence 6665 57777888887776554
No 116
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.76 E-value=3.4e-17 Score=140.50 Aligned_cols=197 Identities=18% Similarity=0.277 Sum_probs=127.7
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhh----------c-C--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVT----------E-Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~----------~-~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
+.-...+|+|+.|.+..++.+...+. . | ...+++|+||||||||++|+++|+.+..+ .+.+.+.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~---fi~i~~s 213 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT---FIRVVGS 213 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC---EEEEehH
Confidence 34456789999999999988887663 1 1 23349999999999999999999865211 1111110
Q ss_pred ceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (248)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (248)
.+. -.+ .+ .....+.+.+.... ...|.|++|||+|.+.
T Consensus 214 ~l~--------------------~k~----~g-e~~~~lr~lf~~A~---------~~~P~ILfIDEID~i~~~r~~~~~ 259 (398)
T PTZ00454 214 EFV--------------------QKY----LG-EGPRMVRDVFRLAR---------ENAPSIIFIDEVDSIATKRFDAQT 259 (398)
T ss_pred HHH--------------------HHh----cc-hhHHHHHHHHHHHH---------hcCCeEEEEECHhhhccccccccC
Confidence 000 000 00 01122444444332 2367899999998762
Q ss_pred ---HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 025758 144 ---REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (248)
Q Consensus 144 ---~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~ 212 (248)
...+..+..++... ..+..+|++||++..+.+++.+ |+ ..|.|+.|+.++...+++..+.+.++..+ -
T Consensus 260 ~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-v 338 (398)
T PTZ00454 260 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-V 338 (398)
T ss_pred CccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-c
Confidence 23344455554432 2356799999999999999876 66 57999999999999999988876655422 2
Q ss_pred HHHHHHHHccc-cHHHHHHHHHHHhhhc
Q 025758 213 FATRLAEKSNR-SLRRAILSFETCRVQQ 239 (248)
Q Consensus 213 ~~~~l~~~~~g-~~r~~~~~l~~~~~~~ 239 (248)
.+..++..+.| +.+++.++++.+...+
T Consensus 339 d~~~la~~t~g~sgaDI~~l~~eA~~~A 366 (398)
T PTZ00454 339 DLEDFVSRPEKISAADIAAICQEAGMQA 366 (398)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 36667766644 5777777777766543
No 117
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.2e-17 Score=139.02 Aligned_cols=222 Identities=15% Similarity=0.195 Sum_probs=146.7
Q ss_pred ccCCCCCcccccccHHHHHHHH----HHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCccc--ceecccceeeccC
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEK--VKVENKTWKIDAG 78 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~----~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~--~~~~~~~~~~~~~ 78 (248)
+-|-|.. +.+.+..+..+. .++.++.+.+++++||+|||||++++.+++++....... +.+++..+. .+
T Consensus 12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~--t~ 86 (366)
T COG1474 12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR--TP 86 (366)
T ss_pred CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC--CH
Confidence 4466644 666666555554 444555555699999999999999999999987664433 444443222 10
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~ 158 (248)
. .......+.+. .....|...........+.+.. ....-|++|||+|.|.......|+.++....
T Consensus 87 ~------~i~~~i~~~~~-~~p~~g~~~~~~~~~l~~~~~~--------~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~ 151 (366)
T COG1474 87 Y------QVLSKILNKLG-KVPLTGDSSLEILKRLYDNLSK--------KGKTVIVILDEVDALVDKDGEVLYSLLRAPG 151 (366)
T ss_pred H------HHHHHHHHHcC-CCCCCCCchHHHHHHHHHHHHh--------cCCeEEEEEcchhhhccccchHHHHHHhhcc
Confidence 0 00001111111 2233344444444444444443 3467799999999887655567777776543
Q ss_pred CC---eeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH---ccccH
Q 025758 159 AS---CRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEK---SNRSL 225 (248)
Q Consensus 159 ~~---~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~---~~g~~ 225 (248)
.+ ..+|.++|+.. .+.+.++|+. ..|.|+||+.+|+..|+..+++.. .-.+++++++.++.. ..||+
T Consensus 152 ~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDA 231 (366)
T COG1474 152 ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDA 231 (366)
T ss_pred ccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccH
Confidence 33 45777778774 5777778877 469999999999999999998752 336888998888744 46799
Q ss_pred HHHHHHHHHHhhhcccccCCC
Q 025758 226 RRAILSFETCRVQQLRFTMPS 246 (248)
Q Consensus 226 r~~~~~l~~~~~~~~~~~~~~ 246 (248)
|.++.+|..++..+.......
T Consensus 232 R~aidilr~A~eiAe~~~~~~ 252 (366)
T COG1474 232 RKAIDILRRAGEIAEREGSRK 252 (366)
T ss_pred HHHHHHHHHHHHHHHhhCCCC
Confidence 999999999998777544433
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=2.7e-17 Score=145.76 Aligned_cols=192 Identities=16% Similarity=0.255 Sum_probs=131.5
Q ss_pred CCcccccc---cHHHHHHHHHHhhc-CCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 10 KTLDQVIV---HQDIAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 10 ~~~~~lig---~~~~~~~l~~~~~~-~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
.+|++++. +..+...+..++.. +...+ ++|+|++|+|||+|+++|+..+.....+. +
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~-~----------------- 346 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGT-R----------------- 346 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCC-e-----------------
Confidence 57889874 33345455555543 22223 99999999999999999999763211110 0
Q ss_pred ceeeecccceeeeCC-CCcC--cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcC
Q 025758 85 ELTTLSSANHVELSP-SDAG--FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA 159 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~ 159 (248)
+.|.. +... ..... ....+..+.+. -...++|+|||++.+. ...+..|+++++....
T Consensus 347 ----------V~Yitaeef~~el~~al-~~~~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e 408 (617)
T PRK14086 347 ----------VRYVSSEEFTNEFINSI-RDGKGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHN 408 (617)
T ss_pred ----------EEEeeHHHHHHHHHHHH-HhccHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHh
Confidence 11111 0000 00000 00001111111 1246799999998774 3457889999988754
Q ss_pred C-eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHH
Q 025758 160 S-CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231 (248)
Q Consensus 160 ~-~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~ 231 (248)
+ ..+|++++... .+.+.|+||+ .++.+.+|+.+.+..||++.+..+++.++++++++|+++..+|+|.+...
T Consensus 409 ~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 409 ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred cCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 3 45777777653 4778999998 68999999999999999999999999999999999999999999999888
Q ss_pred HHHHhh
Q 025758 232 FETCRV 237 (248)
Q Consensus 232 l~~~~~ 237 (248)
|+.+..
T Consensus 489 L~rL~a 494 (617)
T PRK14086 489 LIRVTA 494 (617)
T ss_pred HHHHHH
Confidence 877653
No 119
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.76 E-value=4.3e-17 Score=152.19 Aligned_cols=185 Identities=18% Similarity=0.316 Sum_probs=126.0
Q ss_pred ccccccHHHHHHHHHHhhc--------CCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 13 DQVIVHQDIAQNLKKLVTE--------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~--------~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
+.++||+.+++.+...+.. +++.+ ++|+||+|+|||++|+++|..+++.....++++...|......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~---- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV---- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH----
Confidence 4578999999999887742 22233 8999999999999999999998876655555555433211110
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----- 158 (248)
...++-.+...+......+. . ... ...+.|+++||+|.+++..++.|++++++..
T Consensus 585 --------~~l~g~~~gyvg~~~~~~l~---~-~~~--------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~ 644 (821)
T CHL00095 585 --------SKLIGSPPGYVGYNEGGQLT---E-AVR--------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK 644 (821)
T ss_pred --------HHhcCCCCcccCcCccchHH---H-HHH--------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC
Confidence 00011111111111111122 2 222 2245799999999999999999999999742
Q ss_pred ------CCeeEEEEecCCCc-------------------------------------ccHHHhhhh-heeeecCCCHHHH
Q 025758 159 ------ASCRLILCCNSSSK-------------------------------------VTEAIRSRC-LNIRINSPTEEQI 194 (248)
Q Consensus 159 ------~~~~~Il~t~~~~~-------------------------------------~~~~l~sR~-~~i~~~~~~~~~~ 194 (248)
.++.||+|||-... +.|.+.+|+ .++.|.+++.+++
T Consensus 645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l 724 (821)
T CHL00095 645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDV 724 (821)
T ss_pred CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHH
Confidence 45678888874311 235678888 7999999999999
Q ss_pred HHHHHHHHHH-------c--CCCCCHHHHHHHHHHc
Q 025758 195 VKVLEFIAKK-------E--GLQLPSGFATRLAEKS 221 (248)
Q Consensus 195 ~~il~~~~~~-------~--~~~~~~~~~~~l~~~~ 221 (248)
.+|+...+.+ . .+.+++++.++|++..
T Consensus 725 ~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 725 WEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 9998887663 2 3468899999999874
No 120
>CHL00176 ftsH cell division protein; Validated
Probab=99.75 E-value=5.8e-17 Score=146.14 Aligned_cols=192 Identities=19% Similarity=0.312 Sum_probs=126.3
Q ss_pred CCCcccccccHHHHHHHHHHhh---c--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~---~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
..+|+|++|.+++++.+...+. . ...+ +++|+||||||||++|+++|++...+- +.+.+..+
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~---i~is~s~f--- 252 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF---FSISGSEF--- 252 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---eeccHHHH---
Confidence 4689999999998888776652 1 1223 499999999999999999998652211 11111000
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------H
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E 145 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~ 145 (248)
.. ...+. ....+++.+.... ...|.|++|||+|.+.. .
T Consensus 253 ------------------~~---~~~g~-~~~~vr~lF~~A~---------~~~P~ILfIDEID~l~~~r~~~~~~~~~e 301 (638)
T CHL00176 253 ------------------VE---MFVGV-GAARVRDLFKKAK---------ENSPCIVFIDEIDAVGRQRGAGIGGGNDE 301 (638)
T ss_pred ------------------HH---Hhhhh-hHHHHHHHHHHHh---------cCCCcEEEEecchhhhhcccCCCCCCcHH
Confidence 00 00000 1112344444332 23567999999988732 2
Q ss_pred HHHHHHHHH---HHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758 146 AQHSLRRTM---EKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (248)
Q Consensus 146 ~~~~ll~~l---e~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l 217 (248)
....+..++ +... .+..+|.+||++..+.+++.+ |+ ..+.|+.|+.+++..++..++.+..+ .++..+..+
T Consensus 302 ~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~l 380 (638)
T CHL00176 302 REQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELI 380 (638)
T ss_pred HHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHH
Confidence 233344444 4332 345688888998889999986 44 68999999999999999998877443 345568889
Q ss_pred HHHccc-cHHHHHHHHHHHhhh
Q 025758 218 AEKSNR-SLRRAILSFETCRVQ 238 (248)
Q Consensus 218 ~~~~~g-~~r~~~~~l~~~~~~ 238 (248)
+..+.| +.+++.++++.+...
T Consensus 381 A~~t~G~sgaDL~~lvneAal~ 402 (638)
T CHL00176 381 ARRTPGFSGADLANLLNEAAIL 402 (638)
T ss_pred HhcCCCCCHHHHHHHHHHHHHH
Confidence 988877 777887888776644
No 121
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.75 E-value=6.6e-17 Score=139.09 Aligned_cols=193 Identities=20% Similarity=0.258 Sum_probs=123.4
Q ss_pred CCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~ 74 (248)
...+++++.|.+..++.+...+.. ....+++|+||||||||++|+++|..+..+ .+.+.+..+
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~---~i~v~~~~l- 201 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT---FIRVVGSEL- 201 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC---EEEeehHHH-
Confidence 356789999999999888876631 123349999999999999999999976321 111111000
Q ss_pred eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-----------
Q 025758 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------- 143 (248)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----------- 143 (248)
.....+. ....+.+.+.... ...+.||+|||+|.+.
T Consensus 202 -----------------------~~~~~g~-~~~~i~~~f~~a~---------~~~p~IlfiDEiD~l~~~r~~~~~~~~ 248 (389)
T PRK03992 202 -----------------------VQKFIGE-GARLVRELFELAR---------EKAPSIIFIDEIDAIAAKRTDSGTSGD 248 (389)
T ss_pred -----------------------hHhhccc-hHHHHHHHHHHHH---------hcCCeEEEEechhhhhcccccCCCCcc
Confidence 0000010 1112333343322 2356799999999872
Q ss_pred HHHHHHHHHHHHHhc-----CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758 144 REAQHSLRRTMEKYS-----ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (248)
Q Consensus 144 ~~~~~~ll~~le~~~-----~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 215 (248)
...+..+..++.+.. .+..+|++||.+..+.+++.+ |+ ..|.|++|+.++..+++...+.+..+.- +..+.
T Consensus 249 ~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~ 327 (389)
T PRK03992 249 REVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLE 327 (389)
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHH
Confidence 344555666664432 356789999999999999975 66 5799999999999999998776544431 23366
Q ss_pred HHHHHccc-cHHHHHHHHHHHhhh
Q 025758 216 RLAEKSNR-SLRRAILSFETCRVQ 238 (248)
Q Consensus 216 ~l~~~~~g-~~r~~~~~l~~~~~~ 238 (248)
.+++.+.| +.+++..++..+...
T Consensus 328 ~la~~t~g~sgadl~~l~~eA~~~ 351 (389)
T PRK03992 328 ELAELTEGASGADLKAICTEAGMF 351 (389)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHH
Confidence 67766654 355555555555543
No 122
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.74 E-value=7.1e-17 Score=141.42 Aligned_cols=192 Identities=17% Similarity=0.124 Sum_probs=124.7
Q ss_pred CCCcccccccHHHHHHHHHHhh--------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVT--------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~--------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+.+|+++.|.+.+++.+..... .| ..+ ++||+||||||||++|+++|+++..+- +.++..
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~~~------- 293 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLDVG------- 293 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEEhH-------
Confidence 4678999999998888875321 12 223 499999999999999999999763221 111100
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH------------H
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------------A 146 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------------~ 146 (248)
. +.....+. ....+.+.++.... ..|.|++|||+|.+... .
T Consensus 294 --------------~---l~~~~vGe-se~~l~~~f~~A~~---------~~P~IL~IDEID~~~~~~~~~~d~~~~~rv 346 (489)
T CHL00195 294 --------------K---LFGGIVGE-SESRMRQMIRIAEA---------LSPCILWIDEIDKAFSNSESKGDSGTTNRV 346 (489)
T ss_pred --------------H---hcccccCh-HHHHHHHHHHHHHh---------cCCcEEEehhhhhhhccccCCCCchHHHHH
Confidence 0 00000111 12234444543332 35679999999865321 1
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcc
Q 025758 147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAEKSN 222 (248)
Q Consensus 147 ~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~-~~~~~~~~l~~~~~ 222 (248)
.+.|+..+++......+|.+||++..+.+++.. |+ ..+.++.|+.++..+++...+.+.+.. .++..++.+++.+.
T Consensus 347 l~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~ 426 (489)
T CHL00195 347 LATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSN 426 (489)
T ss_pred HHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcC
Confidence 234566666555556788889999999999976 77 689999999999999999998885433 33555788887765
Q ss_pred c-cHHHHHHHHHHHhh
Q 025758 223 R-SLRRAILSFETCRV 237 (248)
Q Consensus 223 g-~~r~~~~~l~~~~~ 237 (248)
| +.+++.+.+..+..
T Consensus 427 GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 427 KFSGAEIEQSIIEAMY 442 (489)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4 45555555544443
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.74 E-value=1.9e-16 Score=147.97 Aligned_cols=201 Identities=18% Similarity=0.293 Sum_probs=131.7
Q ss_pred cccccccHHHHHHHHHHhhc--------CCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758 12 LDQVIVHQDIAQNLKKLVTE--------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~~--------~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
.+.++||+.+++.+...+.. +++ ..++|+||+|||||++|+++++.+++.....+.+++..+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~----- 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH----- 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh-----
Confidence 35678999999988887752 222 2489999999999999999999876655444444443322000
Q ss_pred ccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----
Q 025758 83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---- 158 (248)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---- 158 (248)
.....++..+...+...... +...... ..+.|++|||++.+++..++.|++++++..
T Consensus 642 -------~~~~LiG~~pgy~g~~~~g~----l~~~v~~--------~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~ 702 (857)
T PRK10865 642 -------SVSRLVGAPPGYVGYEEGGY----LTEAVRR--------RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG 702 (857)
T ss_pred -------hHHHHhCCCCcccccchhHH----HHHHHHh--------CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC
Confidence 00011222221112111111 1111221 234699999999999999999999998642
Q ss_pred -------CCeeEEEEecCCC-------------------------cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH-
Q 025758 159 -------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK- 204 (248)
Q Consensus 159 -------~~~~~Il~t~~~~-------------------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~- 204 (248)
.++.||++||... .+.|.|.+|+ .++.|.|++.+++..++...+.+
T Consensus 703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 2345788887621 2456888999 89999999999999998877654
Q ss_pred ------cC--CCCCHHHHHHHHHHccc---cHHHHHHHHHHHh
Q 025758 205 ------EG--LQLPSGFATRLAEKSNR---SLRRAILSFETCR 236 (248)
Q Consensus 205 ------~~--~~~~~~~~~~l~~~~~g---~~r~~~~~l~~~~ 236 (248)
.+ +.++++++++|++.... .+|.+-+.++..+
T Consensus 783 ~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 783 YKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred HHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHH
Confidence 13 45799999999986521 3666666555544
No 124
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.1e-16 Score=135.59 Aligned_cols=196 Identities=19% Similarity=0.312 Sum_probs=137.3
Q ss_pred CCcccccc---cHHHHHHHHHHhhcC-C-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 10 KTLDQVIV---HQDIAQNLKKLVTEQ-D-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 10 ~~~~~lig---~~~~~~~l~~~~~~~-~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
-||++++. ++.+......+.+.. . .+.++|+||.|+|||+|+++++...........
T Consensus 84 ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~------------------ 145 (408)
T COG0593 84 YTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNAR------------------ 145 (408)
T ss_pred CchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCce------------------
Confidence 35677764 555666666665543 2 334999999999999999999997643222110
Q ss_pred ceeeecccceeeeCCCCcCcchh-HHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCe
Q 025758 85 ELTTLSSANHVELSPSDAGFQDR-YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASC 161 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~ 161 (248)
.+.+..+..-..-. ......++.+.+.+ ..++++||+++.+.. ..+..|+++++....+.
T Consensus 146 ---------v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~ 208 (408)
T COG0593 146 ---------VVYLTSEDFTNDFVKALRDNEMEKFKEKY--------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG 208 (408)
T ss_pred ---------EEeccHHHHHHHHHHHHHhhhHHHHHHhh--------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC
Confidence 01111111100000 00111233343333 346899999987753 45899999999886665
Q ss_pred -eEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 162 -RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 162 -~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
.+|+++..++ .+.+.|+||+ .++.+.+|+.+.+..+|++.++..++.++++++.++++...+|+|.+.-.|+
T Consensus 209 kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 209 KQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred CEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 5666665554 4668999998 6899999999999999999999999999999999999999999999988888
Q ss_pred HHhhhcc
Q 025758 234 TCRVQQL 240 (248)
Q Consensus 234 ~~~~~~~ 240 (248)
.+...+.
T Consensus 289 ~l~~~a~ 295 (408)
T COG0593 289 RLDAFAL 295 (408)
T ss_pred HHHHHHH
Confidence 7775444
No 125
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.73 E-value=1.9e-16 Score=148.26 Aligned_cols=200 Identities=19% Similarity=0.291 Sum_probs=135.3
Q ss_pred ccccccHHHHHHHHHHhhcC--------CCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 13 DQVIVHQDIAQNLKKLVTEQ--------DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~~--------~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
+.++||+.+++.+...+... ++.+ ++|.||+|+|||++|++++..+++.....+.+++..+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~------ 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH------ 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc------
Confidence 45799999999988877531 2233 99999999999999999999876655444444443332000
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----- 158 (248)
.....++..+...+......+.+.+ ... .+.|+++||++.+++..++.|++++++..
T Consensus 639 ------~~~~l~g~~~g~~g~~~~g~l~~~v----~~~--------p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 639 ------SVARLIGAPPGYVGYEEGGQLTEAV----RRK--------PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred ------hHHHhcCCCCCccCcccccHHHHHH----HcC--------CCcEEEEeccccCCHHHHHHHHHHHhcCceecCC
Confidence 0011122222222221111122222 112 34699999999999999999999998752
Q ss_pred ------CCeeEEEEecCCCc-------------------------ccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH--
Q 025758 159 ------ASCRLILCCNSSSK-------------------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK-- 204 (248)
Q Consensus 159 ------~~~~~Il~t~~~~~-------------------------~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~-- 204 (248)
.++.||++||-... +.+.|..|+ .++.|.|++.+++.+|+...+..
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~ 780 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLR 780 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHH
Confidence 34568888886321 335566777 68999999999999998877652
Q ss_pred -----c--CCCCCHHHHHHHHHHc---cccHHHHHHHHHHHh
Q 025758 205 -----E--GLQLPSGFATRLAEKS---NRSLRRAILSFETCR 236 (248)
Q Consensus 205 -----~--~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~ 236 (248)
. .+.++++++++|++.. .+++|.+.+.++...
T Consensus 781 ~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 781 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 2 3568999999999874 477888888887665
No 126
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.73 E-value=1.4e-16 Score=146.10 Aligned_cols=181 Identities=20% Similarity=0.304 Sum_probs=119.7
Q ss_pred cccccHHHHHHHHHHhhc--------CCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 14 QVIVHQDIAQNLKKLVTE--------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~~--------~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
.++||+++++.+...+.. +++ .+++|+||+|||||++|+.+|..+. ..-+.+++..+....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~---~~~i~id~se~~~~~------- 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEYMERH------- 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC---CCcEEeechhhcccc-------
Confidence 468999999999888752 222 3499999999999999999999763 223333333222000
Q ss_pred ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 025758 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------ 158 (248)
.....++..+...+......+.+. .. ...+.|+++||+|.+++..++.|++++++..
T Consensus 529 -----~~~~LiG~~~gyvg~~~~g~L~~~----v~--------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g 591 (758)
T PRK11034 529 -----TVSRLIGAPPGYVGFDQGGLLTDA----VI--------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNG 591 (758)
T ss_pred -----cHHHHcCCCCCcccccccchHHHH----HH--------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCC
Confidence 011112222211111111112221 11 2245799999999999999999999998642
Q ss_pred -----CCeeEEEEecCC-------------------------CcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH---
Q 025758 159 -----ASCRLILCCNSS-------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--- 204 (248)
Q Consensus 159 -----~~~~~Il~t~~~-------------------------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~--- 204 (248)
.++.||++||.. ..+.|.+..|+ .++.|++++.+++.+|+...+.+
T Consensus 592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~ 671 (758)
T PRK11034 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA 671 (758)
T ss_pred ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 345688888832 12557888888 58999999999999998876542
Q ss_pred ----cC--CCCCHHHHHHHHHHc
Q 025758 205 ----EG--LQLPSGFATRLAEKS 221 (248)
Q Consensus 205 ----~~--~~~~~~~~~~l~~~~ 221 (248)
.+ +.++++++++|++..
T Consensus 672 ~l~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 672 QLDQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred HHHHCCCCceECHHHHHHHHHhC
Confidence 24 458899999999765
No 127
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=1.8e-16 Score=146.43 Aligned_cols=197 Identities=20% Similarity=0.275 Sum_probs=127.5
Q ss_pred ccccccHHHHHHHHHHhhc--------CCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 13 DQVIVHQDIAQNLKKLVTE--------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~--------~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
+.++||+++++.+...+.. +++.+ ++|+||+|||||++|+++|..+.+ .-+.+++..+....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d~se~~~~~------ 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFDMSEYMEKH------ 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEeCchhhhcc------
Confidence 3468999999988887652 22333 899999999999999999997632 22333332221000
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----- 158 (248)
.....++-.+...+......+.+ ... ...+.|++|||++.++++.++.|++++++..
T Consensus 525 ------~~~~lig~~~gyvg~~~~~~l~~----~~~--------~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~ 586 (731)
T TIGR02639 525 ------TVSRLIGAPPGYVGFEQGGLLTE----AVR--------KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNN 586 (731)
T ss_pred ------cHHHHhcCCCCCcccchhhHHHH----HHH--------hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCC
Confidence 00011111111112211111222 222 2245799999999999999999999998641
Q ss_pred ------CCeeEEEEecCCC-------------------------cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH--
Q 025758 159 ------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK-- 204 (248)
Q Consensus 159 ------~~~~~Il~t~~~~-------------------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~-- 204 (248)
.++.||++||... .+.|.+.+|+ .++.|.+++.+++.+++...+.+
T Consensus 587 g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~ 666 (731)
T TIGR02639 587 GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS 666 (731)
T ss_pred CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 2455888876531 2566788898 68999999999999999988763
Q ss_pred -----c--CCCCCHHHHHHHHHHc-c--ccHHHHHHHHHHHh
Q 025758 205 -----E--GLQLPSGFATRLAEKS-N--RSLRRAILSFETCR 236 (248)
Q Consensus 205 -----~--~~~~~~~~~~~l~~~~-~--g~~r~~~~~l~~~~ 236 (248)
. .+.++++++++|++.. + -.+|.+-+.++...
T Consensus 667 ~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 667 KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 2 3568899999999864 1 23555555554433
No 128
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.5e-17 Score=126.11 Aligned_cols=155 Identities=17% Similarity=0.247 Sum_probs=122.8
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
.+++.++..++.|.+.+ +.||||+||||+.|++|. +.-|++|++.++|.+..... ..+...+++..
T Consensus 16 ~AvrdVSF~ae~Gei~G--lLG~NGAGKTT~LRmiat-lL~P~~G~v~idg~d~~~~p-----------~~vrr~IGVl~ 81 (245)
T COG4555 16 QAVRDVSFEAEEGEITG--LLGENGAGKTTLLRMIAT-LLIPDSGKVTIDGVDTVRDP-----------SFVRRKIGVLF 81 (245)
T ss_pred hhhhheeEEeccceEEE--EEcCCCCCchhHHHHHHH-hccCCCceEEEeecccccCh-----------HHHhhhcceec
Confidence 36777777888888777 999999999999999998 78999999999996544111 12234578888
Q ss_pred CCcCcchhHHHHHHHHHHHhcCCCcCCC---------------------------------------CCCeeEEEEeCC-
Q 025758 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKG---------------------------------------KRGFKVLVLNEV- 139 (248)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~viiiDE~- 139 (248)
...+.+...++++.+.+++.....+-.. ..+|+++++|||
T Consensus 82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 7888899999999988877654321110 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecC
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS 188 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~ 188 (248)
.++|-.....|.+.+.......+.|++|++.-+-.+++++|+.+++-..
T Consensus 162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 8999999999999999887778888888888888889999997766543
No 129
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.72 E-value=2.9e-16 Score=134.41 Aligned_cols=195 Identities=18% Similarity=0.258 Sum_probs=122.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 6 ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
+....+++++.|.+..++.+..++.. ....+++|+||||||||++|+++|+.+..+- +.+.+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~---~~v~~~- 190 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVVGS- 190 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE---EecchH-
Confidence 45567889999999999988877631 1133499999999999999999998652210 111000
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------- 143 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------- 143 (248)
.+.....+ .......+.+.... ...+.||+|||+|.+.
T Consensus 191 -----------------------~l~~~~~g-~~~~~i~~~f~~a~---------~~~p~il~iDEiD~l~~~~~~~~~~ 237 (364)
T TIGR01242 191 -----------------------ELVRKYIG-EGARLVREIFELAK---------EKAPSIIFIDEIDAIAAKRTDSGTS 237 (364)
T ss_pred -----------------------HHHHHhhh-HHHHHHHHHHHHHH---------hcCCcEEEhhhhhhhccccccCCCC
Confidence 00000000 01111233333222 2356799999998772
Q ss_pred --HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758 144 --REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (248)
Q Consensus 144 --~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 213 (248)
+..+..+..++.+. ..+..+|++||.+..+.+++++ |+ ..+.|+.|+.++..+++...+.+..+.- +-.
T Consensus 238 ~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~ 316 (364)
T TIGR01242 238 GDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD 316 (364)
T ss_pred ccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC
Confidence 33455566666443 2356799999999999999975 55 5799999999999999988775544331 123
Q ss_pred HHHHHHHccc-cHHHHHHHHHHHhhh
Q 025758 214 ATRLAEKSNR-SLRRAILSFETCRVQ 238 (248)
Q Consensus 214 ~~~l~~~~~g-~~r~~~~~l~~~~~~ 238 (248)
+..++..+.| +.+++.+++..+...
T Consensus 317 ~~~la~~t~g~sg~dl~~l~~~A~~~ 342 (364)
T TIGR01242 317 LEAIAKMTEGASGADLKAICTEAGMF 342 (364)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6667766654 344555555555443
No 130
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-16 Score=139.35 Aligned_cols=191 Identities=19% Similarity=0.248 Sum_probs=133.3
Q ss_pred CCCCCcccccccHHHHHHHHHHhh-----------cC--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 7 YRPKTLDQVIVHQDIAQNLKKLVT-----------EQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~~~~~-----------~~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
....+|+|+=|+++++..|++.+. =| +..++||+||||||||++|+++|.+..+ . |
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~---n--------F 496 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM---N--------F 496 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC---C--------e
Confidence 456789999999999999998764 12 2335999999999999999999986411 0 0
Q ss_pred eeccCCcccccceeeecccceeeeCCCCc---Cc-chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH----
Q 025758 74 KIDAGSRNIDLELTTLSSANHVELSPSDA---GF-QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---- 145 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~---- 145 (248)
+.+..+.. -+ .....+++.++.... ..|.|+++||+|.+..+
T Consensus 497 ---------------------lsvkgpEL~sk~vGeSEr~ir~iF~kAR~---------~aP~IiFfDEiDsi~~~R~g~ 546 (693)
T KOG0730|consen 497 ---------------------LSVKGPELFSKYVGESERAIREVFRKARQ---------VAPCIIFFDEIDALAGSRGGS 546 (693)
T ss_pred ---------------------eeccCHHHHHHhcCchHHHHHHHHHHHhh---------cCCeEEehhhHHhHhhccCCC
Confidence 11111111 00 112235555665543 34579999999987432
Q ss_pred -------HHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH-
Q 025758 146 -------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG- 212 (248)
Q Consensus 146 -------~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~- 212 (248)
..+.|+.-|+.. .+++.+|-.||.++.+.+++.+ |+ ..|++++|+.+...+|++..+.+- .++++
T Consensus 547 ~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~v 624 (693)
T KOG0730|consen 547 SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDV 624 (693)
T ss_pred ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccc
Confidence 234455555543 3456677889999999999999 77 789999999999999999876554 44455
Q ss_pred HHHHHHHHccc-cHHHHHHHHHHHhhhcc
Q 025758 213 FATRLAEKSNR-SLRRAILSFETCRVQQL 240 (248)
Q Consensus 213 ~~~~l~~~~~g-~~r~~~~~l~~~~~~~~ 240 (248)
.++.|++.++| +.+++-++++.++..+-
T Consensus 625 dl~~La~~T~g~SGAel~~lCq~A~~~a~ 653 (693)
T KOG0730|consen 625 DLEELAQATEGYSGAEIVAVCQEAALLAL 653 (693)
T ss_pred cHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 58888887765 67888888888775543
No 131
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.71 E-value=4e-16 Score=136.65 Aligned_cols=184 Identities=16% Similarity=0.258 Sum_probs=115.4
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhc-----------C--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----------~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
..+++.+.+|+++.|.+..++.+...+.- | ...+++|+||||||||++|+++|..+..+..... .
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~--~ 249 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET--G 249 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc--C
Confidence 35778899999999999999888876531 1 2234999999999999999999997743211100 0
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH----
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---- 145 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~---- 145 (248)
...+ +........+ ....+ .....++..+........ .+.+.|++|||+|.+...
T Consensus 250 ~~~~------------fl~v~~~eLl---~kyvG-ete~~ir~iF~~Ar~~a~-----~g~p~IIfIDEiD~L~~~R~~~ 308 (512)
T TIGR03689 250 DKSY------------FLNIKGPELL---NKYVG-ETERQIRLIFQRAREKAS-----DGRPVIVFFDEMDSIFRTRGSG 308 (512)
T ss_pred Ccee------------EEeccchhhc---ccccc-hHHHHHHHHHHHHHHHhh-----cCCCceEEEehhhhhhcccCCC
Confidence 0000 0000000000 00000 011123334443332211 236789999999876321
Q ss_pred --------HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758 146 --------AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (248)
Q Consensus 146 --------~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 210 (248)
..+.|+..++... .+..+|.+||++..+.+++.+ |+ ..|.|++|+.++..+|+...+.. .+.++
T Consensus 309 ~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~ 385 (512)
T TIGR03689 309 VSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD 385 (512)
T ss_pred ccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence 1245666665443 356788899999999999987 77 57999999999999999988764 34443
No 132
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.71 E-value=9.1e-17 Score=147.67 Aligned_cols=202 Identities=20% Similarity=0.325 Sum_probs=142.8
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcC------------C--CC--eeEEECCCCCCHHHHHHHHHHHHcCCCcc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ------------D--CP--HLLFYGPPGSGKKTLIMALLRQVFGPGAE 64 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~------------~--~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~ 64 (248)
+.|+++|+|.+..++.|+......+..|+... . .. .++++||+|+|||+.+.+.|+.+.-.-
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v-- 385 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKV-- 385 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccce--
Confidence 47999999999999999888777888887543 1 11 258999999999999999999762211
Q ss_pred cceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH---------HHhcCCCcCCCCCCeeEEE
Q 025758 65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE---------MAKNRPIDTKGKRGFKVLV 135 (248)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~vii 135 (248)
++.+++.... . ..+.+.+.. .........+......|||
T Consensus 386 ------------------------------~E~Nas~~RS-k-~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil 433 (871)
T KOG1968|consen 386 ------------------------------VEKNASDVRS-K-KELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL 433 (871)
T ss_pred ------------------------------eecCcccccc-c-cHHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence 1222221110 0 000000000 0011111111133455999
Q ss_pred EeCCCCCCHH---HHHHHHHHHHHhcCCeeEEEEecCCCcc-cHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 136 LNEVDKLSRE---AQHSLRRTMEKYSASCRLILCCNSSSKV-TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 136 iDE~d~l~~~---~~~~ll~~le~~~~~~~~Il~t~~~~~~-~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
+||+|.|... ....+-.+++ ....++|+++|+.... ..++.+-|..++|..|+.+.+...+..++..+++.+++
T Consensus 434 ~devD~~~~~dRg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~ 511 (871)
T KOG1968|consen 434 MDEVDGMFGEDRGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISD 511 (871)
T ss_pred EeccccccchhhhhHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCc
Confidence 9999988763 3334444555 2346799999998744 44666667999999999999999999999999999999
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 212 GFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 212 ~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
.+++.+++.++||+|+.++.|+.|...
T Consensus 512 ~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 512 DVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred HHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 999999999999999999999999654
No 133
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.71 E-value=7.2e-16 Score=123.29 Aligned_cols=107 Identities=28% Similarity=0.304 Sum_probs=93.9
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC-------------CcccHHHhhhhheeeecCCCHHHHHH
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS-------------SKVTEAIRSRCLNIRINSPTEEQIVK 196 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~-------------~~~~~~l~sR~~~i~~~~~~~~~~~~ 196 (248)
-|.|+||||+++||-++...|.+.+|.+.. ..+||.||.- ..+++++.+|..+|.-.+++.+++++
T Consensus 296 vPGVLFIDEVhMLDiEcFTyL~kalES~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~ 374 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIECFTYLHKALESPIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQ 374 (456)
T ss_pred cCcceEeeehhhhhhHHHHHHHHHhcCCCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHH
Confidence 578999999999999999999999997643 5678887754 46999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHhh
Q 025758 197 VLEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRV 237 (248)
Q Consensus 197 il~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~ 237 (248)
|+..++.-|++.++++.+..++... ..++|.++.+|.-+..
T Consensus 375 Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~ 416 (456)
T KOG1942|consen 375 IIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASI 416 (456)
T ss_pred HHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHH
Confidence 9999999999999999999999765 4679999998874443
No 134
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.71 E-value=1.9e-16 Score=146.06 Aligned_cols=193 Identities=16% Similarity=0.204 Sum_probs=124.1
Q ss_pred cccccHHHHHHHHHHhhc------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 14 QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~~------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
+++|.+.+++.+..|+.. .+.+.++|+||||+||||+++.+|+.+. .....+..++..-. .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~~~i~~~~~~d~------------~ 389 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG-RKYVRMALGGVRDE------------A 389 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCH------------H
Confidence 368999999988877642 3345599999999999999999998653 23222222221000 0
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH----HHHHHHHHHHh------
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------ 157 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~ll~~le~~------ 157 (248)
.+. .....+.....+ ..+..+... .....|++|||+|.+.+.. ..+|+.+++.-
T Consensus 390 ~i~-g~~~~~~g~~~G--------~~~~~l~~~-------~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~ 453 (784)
T PRK10787 390 EIR-GHRRTYIGSMPG--------KLIQKMAKV-------GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFS 453 (784)
T ss_pred Hhc-cchhccCCCCCc--------HHHHHHHhc-------CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEe
Confidence 000 000011111111 112222221 1134599999999998654 48899998741
Q ss_pred ---------cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHH
Q 025758 158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----------EGLQLPSGFATRLA 218 (248)
Q Consensus 158 ---------~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----------~~~~~~~~~~~~l~ 218 (248)
-.+..||+|+|.. .+.++|++||.+|.|.+|+.++...|+.+.+.. ..+.++++++..|+
T Consensus 454 d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii 532 (784)
T PRK10787 454 DHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGII 532 (784)
T ss_pred cccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHH
Confidence 1445677777665 699999999999999999999999998887742 13568899999999
Q ss_pred HHccc--cHHHHHHHHHHHh
Q 025758 219 EKSNR--SLRRAILSFETCR 236 (248)
Q Consensus 219 ~~~~g--~~r~~~~~l~~~~ 236 (248)
+.+.. .+|.+...++..+
T Consensus 533 ~~yt~e~GaR~LeR~I~~i~ 552 (784)
T PRK10787 533 RYYTREAGVRSLEREISKLC 552 (784)
T ss_pred HhCCcccCCcHHHHHHHHHH
Confidence 86642 2555555555544
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=4e-16 Score=144.52 Aligned_cols=190 Identities=17% Similarity=0.233 Sum_probs=122.8
Q ss_pred CCCcccccccHHHHHHHHHHhh------------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVT------------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~------------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~ 75 (248)
..+|+++.|++.+++.|...+. .-+.+ +++|+||||||||++|+++|.++.+ ..+.+.+..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~---~fi~v~~~~--- 522 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA---NFIAVRGPE--- 522 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CEEEEehHH---
Confidence 4689999999999998887663 11233 3999999999999999999986521 111111100
Q ss_pred ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------- 144 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------- 144 (248)
+.....+. ....+++.+..... ..+.|++|||+|.+.+
T Consensus 523 ---------------------l~~~~vGe-se~~i~~~f~~A~~---------~~p~iifiDEid~l~~~r~~~~~~~~~ 571 (733)
T TIGR01243 523 ---------------------ILSKWVGE-SEKAIREIFRKARQ---------AAPAIIFFDEIDAIAPARGARFDTSVT 571 (733)
T ss_pred ---------------------HhhcccCc-HHHHHHHHHHHHHh---------cCCEEEEEEChhhhhccCCCCCCccHH
Confidence 00000111 12234555554432 3567999999987732
Q ss_pred -HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 025758 145 -EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (248)
Q Consensus 145 -~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~ 218 (248)
...+.|+..++.. ..+..+|.+||++..+.+++.. |+ ..+.++.|+.++..++++....+..+. ++..+..++
T Consensus 572 ~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la 650 (733)
T TIGR01243 572 DRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELA 650 (733)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHH
Confidence 2345567777643 3456788899999999999985 88 689999999999999998665443332 223477788
Q ss_pred HHccc-cHHHHHHHHHHHh
Q 025758 219 EKSNR-SLRRAILSFETCR 236 (248)
Q Consensus 219 ~~~~g-~~r~~~~~l~~~~ 236 (248)
..+.| +..++.++++.+.
T Consensus 651 ~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 651 EMTEGYTGADIEAVCREAA 669 (733)
T ss_pred HHcCCCCHHHHHHHHHHHH
Confidence 77654 3444444444444
No 136
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.8e-15 Score=135.80 Aligned_cols=203 Identities=18% Similarity=0.260 Sum_probs=139.5
Q ss_pred CCCCcccccccHHHHHHHHHHhh-----------cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~-----------~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~ 75 (248)
.+.+|+|+.|.++++..|...+. .-++|. +||+||||||||.||+++|++- +.+|..
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----------gVPF~s 374 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----------GVPFFS 374 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----------CCceee
Confidence 45789999999999999987763 234566 9999999999999999999864 222221
Q ss_pred ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------- 144 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------- 144 (248)
.+++ ++++..- + .....+++++.... .+.|.+++|||+|....
T Consensus 375 vSGS-------------EFvE~~~---g-~~asrvr~lf~~ar---------~~aP~iifideida~~~~r~G~~~~~~~ 428 (774)
T KOG0731|consen 375 VSGS-------------EFVEMFV---G-VGASRVRDLFPLAR---------KNAPSIIFIDEIDAVGRKRGGKGTGGGQ 428 (774)
T ss_pred echH-------------HHHHHhc---c-cchHHHHHHHHHhh---------ccCCeEEEecccccccccccccccCCCC
Confidence 1211 1111111 0 01122555555443 34677999999987642
Q ss_pred -HHHHHHHHHH---HHh--cCCeeEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758 145 -EAQHSLRRTM---EKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (248)
Q Consensus 145 -~~~~~ll~~l---e~~--~~~~~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 215 (248)
+....|.+++ +.. ..+..++..||.++-+.++++.- + ..|.++.|+.....+|++.++.+.++..++..+.
T Consensus 429 ~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~ 508 (774)
T KOG0731|consen 429 DEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLS 508 (774)
T ss_pred hHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHH
Confidence 2233444444 333 33456777788988999999864 4 6899999999999999999988888776777788
Q ss_pred HHHHHcccc-HHHHHHHHHHHhhhcccccCCCC
Q 025758 216 RLAEKSNRS-LRRAILSFETCRVQQLRFTMPSV 247 (248)
Q Consensus 216 ~l~~~~~g~-~r~~~~~l~~~~~~~~~~~~~~v 247 (248)
.++..+.|. ...+.|+++.+...+-+.+.++|
T Consensus 509 ~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 509 KLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred HHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 888888775 56667777777776665555444
No 137
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=2.5e-17 Score=128.44 Aligned_cols=151 Identities=17% Similarity=0.272 Sum_probs=122.1
Q ss_pred cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
+|-..++..++..+++|++-+ |.||||+||||+.|+|.+ +..++.|.++.+|.+..... .+.+
T Consensus 12 Fg~k~av~~isf~v~~G~i~G--llG~NGAGKTTtfRmILg-lle~~~G~I~~~g~~~~~~~--------------~~rI 74 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFG--LLGPNGAGKTTTFRMILG-LLEPTEGEITWNGGPLSQEI--------------KNRI 74 (300)
T ss_pred cCceeeecceeeeecCCeEEE--eecCCCCCccchHHHHhc-cCCccCceEEEcCcchhhhh--------------hhhc
Confidence 566667778888888887767 999999999999999998 77999999999997665222 2239
Q ss_pred eeCCCCcCcchhHHHHHHHHHHHhcCCC---------------------------cCC-C-----------CCCeeEEEE
Q 025758 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPI---------------------------DTK-G-----------KRGFKVLVL 136 (248)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~-~-----------~~~~~viii 136 (248)
+|.|+..+.++..++.+.+.+++..... .+| + ...|.++||
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999999888765432 111 0 448999999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 137 DE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
||| .+|||-....|.+.+-+....+..|++|+|..+-.+.|++|...
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llm 202 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLM 202 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhe
Confidence 999 99999999999999988887777777777777777788888643
No 138
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.68 E-value=1.2e-15 Score=143.08 Aligned_cols=205 Identities=19% Similarity=0.299 Sum_probs=139.5
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.++++.+|..++.++|+++.++.+...+..+...+++|+||||+|||++++.++..+.. ......+.+..
T Consensus 162 ~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~--------- 231 (852)
T TIGR03346 162 DLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKR--------- 231 (852)
T ss_pred hHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCe---------
Confidence 36788999999999999999999988887777777999999999999999999987622 11100000100
Q ss_pred cccceeeecccceeeeCCCC--cCcch----hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------HHH
Q 025758 82 IDLELTTLSSANHVELSPSD--AGFQD----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQ 147 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~ 147 (248)
.+.+.... .+... ...+...++.+.. ...+.|+||||++.+.. ++.
T Consensus 232 ------------~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~--------~~~~~ILfIDEih~l~~~g~~~~~~d~~ 291 (852)
T TIGR03346 232 ------------LLALDMGALIAGAKYRGEFEERLKAVLNEVTK--------SEGQIILFIDELHTLVGAGKAEGAMDAG 291 (852)
T ss_pred ------------EEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh--------cCCCeEEEeccHHHhhcCCCCcchhHHH
Confidence 01111100 01111 1123344444432 12567999999987742 233
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 025758 148 HSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLA 218 (248)
Q Consensus 148 ~~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~ 218 (248)
+.|...++ .....+|.+|+..+ ...+++.+||..+.++.|+.++...++.....+ .++.++++.+..++
T Consensus 292 ~~Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~ 369 (852)
T TIGR03346 292 NMLKPALA--RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAA 369 (852)
T ss_pred HHhchhhh--cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence 44444443 23456777777653 468999999999999999999999999877655 35668888888888
Q ss_pred HHcc---cc---HHHHHHHHHHHhhh
Q 025758 219 EKSN---RS---LRRAILSFETCRVQ 238 (248)
Q Consensus 219 ~~~~---g~---~r~~~~~l~~~~~~ 238 (248)
..+. .+ +..|+++|+.++..
T Consensus 370 ~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 370 TLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred HhccccccccCCchHHHHHHHHHHHH
Confidence 6653 33 88999999998854
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.67 E-value=1.1e-14 Score=114.94 Aligned_cols=192 Identities=20% Similarity=0.294 Sum_probs=130.0
Q ss_pred cccCCCCCcccccccHHHHHHHHH----HhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKK----LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~----~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
+....|..+++|+|-+..++.|.. .+......|+||+|+.|||||++++++...+..+.-.-
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRl-------------- 83 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRL-------------- 83 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceE--------------
Confidence 456789999999997776666654 44444445599999999999999999998764333111
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH-HHHHHHHHH---
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QHSLRRTME--- 155 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-~~~ll~~le--- 155 (248)
+++..++.. .+.++++.+.. ...+-||++|+...=..+. -..|..+||
T Consensus 84 ---------------Iev~k~~L~-----~l~~l~~~l~~--------~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl 135 (249)
T PF05673_consen 84 ---------------IEVSKEDLG-----DLPELLDLLRD--------RPYKFILFCDDLSFEEGDTEYKALKSVLEGGL 135 (249)
T ss_pred ---------------EEECHHHhc-----cHHHHHHHHhc--------CCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc
Confidence 333332221 13444555443 2256799999985322233 344444554
Q ss_pred -HhcCCeeEEEEecCCCcccH-----------------------HHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758 156 -KYSASCRLILCCNSSSKVTE-----------------------AIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (248)
Q Consensus 156 -~~~~~~~~Il~t~~~~~~~~-----------------------~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 210 (248)
..+.|+.+..|||...-+.+ +|.+|+ ..|.|.+|+.++..+|+...+.+.++.++
T Consensus 136 e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 136 EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 34677778888886532222 445676 78999999999999999999999999998
Q ss_pred HHH-----HHHHHHHccccHHHHHHHHHHHhh
Q 025758 211 SGF-----ATRLAEKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 211 ~~~-----~~~l~~~~~g~~r~~~~~l~~~~~ 237 (248)
++. +.+-..+.+++.|.|-..++.+..
T Consensus 216 ~e~l~~~Al~wa~~rg~RSGRtA~QF~~~l~g 247 (249)
T PF05673_consen 216 EEELRQEALQWALRRGGRSGRTARQFIDDLAG 247 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Confidence 544 344445567788988887777653
No 140
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.67 E-value=5.7e-15 Score=123.67 Aligned_cols=227 Identities=16% Similarity=0.198 Sum_probs=126.4
Q ss_pred CCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec----cCCccc
Q 025758 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID----AGSRNI 82 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 82 (248)
-.|..|++++||+.+++.+.-.+-.....|++|.|++|+||||+|+++++.+-+.... .+.++... ++....
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~----e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAV----EGCPVNSARPEDCPEWAH 77 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchh----cccccccCcccCCccccc
Confidence 3689999999999999988865543345679999999999999999999954221110 11111100 000000
Q ss_pred ccceeeecc-cceeeeCC--CCcCcchhHHHHHHHHHHHh-cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758 83 DLELTTLSS-ANHVELSP--SDAGFQDRYVVQEVIKEMAK-NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~ 158 (248)
......... ...+.+.. ......+.......+..-.. ..+ +.-...+..++++||++.+++..++.|+..+++..
T Consensus 78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~-G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~ 156 (334)
T PRK13407 78 VSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEP-GLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred ccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecC-CceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence 000000000 00011111 01111111112221111000 111 11123445689999999999999999999998643
Q ss_pred -----------CCeeEEEEe-cCC-C-cccHHHhhhh-heeeecCCCH-HHHHHHHHHHHHH------------------
Q 025758 159 -----------ASCRLILCC-NSS-S-KVTEAIRSRC-LNIRINSPTE-EQIVKVLEFIAKK------------------ 204 (248)
Q Consensus 159 -----------~~~~~Il~t-~~~-~-~~~~~l~sR~-~~i~~~~~~~-~~~~~il~~~~~~------------------ 204 (248)
....|++++ .++ + .+.+++.+|+ ..+.++++.. ++..+++......
T Consensus 157 v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 236 (334)
T PRK13407 157 NVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQL 236 (334)
T ss_pred eEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCC
Confidence 112355543 333 2 5888999999 5677777766 6656666543210
Q ss_pred -----------cCCCCCHHHHHHHHHHc---c-ccHHHHHHHHHHHhhh
Q 025758 205 -----------EGLQLPSGFATRLAEKS---N-RSLRRAILSFETCRVQ 238 (248)
Q Consensus 205 -----------~~~~~~~~~~~~l~~~~---~-g~~r~~~~~l~~~~~~ 238 (248)
..+.++++++.++++.+ + .+.|..+.++..+...
T Consensus 237 ~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~ 285 (334)
T PRK13407 237 RGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARAL 285 (334)
T ss_pred HHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 24568888888887554 1 3577777666555533
No 141
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=1e-16 Score=132.85 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=115.9
Q ss_pred Ccccccc-cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758 11 TLDQVIV-HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (248)
Q Consensus 11 ~~~~lig-~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (248)
++..-+| ...+++.+...+++|.+-. |.||||+||||+.+++++ +..+.+|.+.++|.+..... .
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~g--llG~NGAGKTTllk~l~g-l~~p~~G~i~i~G~~~~~~~-----------~ 74 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFG--LLGPNGAGKTTLLKILAG-LLKPTSGEILVLGYDVVKEP-----------A 74 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEE--EECCCCCCHHHHHHHHhC-CcCCCceEEEEcCEeCccCH-----------H
Confidence 3444466 4677778888887775555 999999999999999998 77889999999996554211 1
Q ss_pred cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCc---------------------------CCC------------CCC
Q 025758 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID---------------------------TKG------------KRG 130 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~------------~~~ 130 (248)
.....++|.++....++..++.+.++.++..+... +|. ..+
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 11234778887777777777777777665544321 110 458
Q ss_pred eeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhhh
Q 025758 131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 131 ~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~~ 182 (248)
|+++|+||| .+||+.....++++|.+..... ..|++|+|.....+.+++|+.
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~ 208 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence 999999999 8999999999999999987765 566666666666667788874
No 142
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.3e-15 Score=116.63 Aligned_cols=162 Identities=20% Similarity=0.310 Sum_probs=112.9
Q ss_pred CCcccccccHHHHHHHHHHhh-------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 10 KTLDQVIVHQDIAQNLKKLVT-------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~-------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
.+..|+=|.+-.++.++..++ -..+.+++++||||+|||.+++++|.+- .+..+++.|..|.
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~firvvgsefv-- 226 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV-- 226 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH--
Confidence 456677677766777766653 1223349999999999999999999743 3334444443332
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC-----------CHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SRE 145 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~~ 145 (248)
-.|..+++ ..+++.++... ++.|.+|+|||+|.+ +.+
T Consensus 227 ------------------qkylgegp-----rmvrdvfrlak---------enapsiifideidaiatkrfdaqtgadre 274 (408)
T KOG0727|consen 227 ------------------QKYLGEGP-----RMVRDVFRLAK---------ENAPSIIFIDEIDAIATKRFDAQTGADRE 274 (408)
T ss_pred ------------------HHHhccCc-----HHHHHHHHHHh---------ccCCcEEEeehhhhHhhhhccccccccHH
Confidence 11222221 13556555333 456789999999875 456
Q ss_pred HHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCC
Q 025758 146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ 208 (248)
Q Consensus 146 ~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~ 208 (248)
.+..|+++++.. ..|.++|+.||..+.+.|++..-. ..|.|+.|+..+.+-++..+..+-++.
T Consensus 275 vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 275 VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred HHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 778888888753 456899999999999999998765 589999999999888888777665444
No 143
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.65 E-value=1.3e-14 Score=116.52 Aligned_cols=119 Identities=24% Similarity=0.236 Sum_probs=100.3
Q ss_pred CCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC------------CcccHHHhhhhheeeecCCCHHHHH
Q 025758 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIV 195 (248)
Q Consensus 128 ~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~------------~~~~~~l~sR~~~i~~~~~~~~~~~ 195 (248)
+--|.|+||||+++|+-++...|.+.+|.-- .+.+|+.||.- ..++-++.+|..+|.-.||+.+++.
T Consensus 286 eivpGVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~ 364 (454)
T KOG2680|consen 286 EIVPGVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIK 364 (454)
T ss_pred eeccceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHH
Confidence 3467899999999999999999999998632 13455556533 4689999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhcccccCCCC
Q 025758 196 KVLEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQLRFTMPSV 247 (248)
Q Consensus 196 ~il~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~~~~~~v 247 (248)
+||.-++..|.+.+++++++.+.... ..++|.+++++..+...+.+++.+.|
T Consensus 365 ~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v 417 (454)
T KOG2680|consen 365 KILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVV 417 (454)
T ss_pred HHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCcee
Confidence 99999999999999999999998775 45799999999988877776666544
No 144
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.3e-15 Score=121.19 Aligned_cols=174 Identities=23% Similarity=0.281 Sum_probs=115.6
Q ss_pred CCCcccccccHHHHHHHHHHhh----------cCCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVT----------EQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~----------~~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
-+.|+|+.|..++++.|+..+- ..+-| ++|++||||||||.||+++|.+... .|
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t-----------TF--- 273 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT-----------TF--- 273 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC-----------eE---
Confidence 3789999999999999998762 22323 4999999999999999999986421 11
Q ss_pred cCCcccccceeeecccceeeeCCCCc---CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----------
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDA---GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------- 143 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------- 143 (248)
+-+..+.. --.+.+.+.+++-.++.++ .|.+|||||||.+-
T Consensus 274 ------------------FNVSsstltSKwRGeSEKlvRlLFemARfy--------APStIFiDEIDslcs~RG~s~EHE 327 (491)
T KOG0738|consen 274 ------------------FNVSSSTLTSKWRGESEKLVRLLFEMARFY--------APSTIFIDEIDSLCSQRGGSSEHE 327 (491)
T ss_pred ------------------EEechhhhhhhhccchHHHHHHHHHHHHHh--------CCceeehhhHHHHHhcCCCccchh
Confidence 11111111 1123344555555566655 45699999999873
Q ss_pred --HHHHHHHHHHHHHhcC-----CeeEEEE-ecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758 144 --REAQHSLRRTMEKYSA-----SCRLILC-CNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (248)
Q Consensus 144 --~~~~~~ll~~le~~~~-----~~~~Il~-t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 214 (248)
....+.||-.++.... .+++||. ||.|=++.++++.|+ ..|.++.|+.+.....++..+..-. ..++--+
T Consensus 328 aSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~-~~~~~~~ 406 (491)
T KOG0738|consen 328 ASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE-LDDPVNL 406 (491)
T ss_pred HHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc-CCCCccH
Confidence 2245667777764321 2356665 556669999999999 5799999999999998887664422 2223336
Q ss_pred HHHHHHccc
Q 025758 215 TRLAEKSNR 223 (248)
Q Consensus 215 ~~l~~~~~g 223 (248)
+.|++.++|
T Consensus 407 ~~lae~~eG 415 (491)
T KOG0738|consen 407 EDLAERSEG 415 (491)
T ss_pred HHHHHHhcC
Confidence 666655543
No 145
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.63 E-value=2.5e-14 Score=120.04 Aligned_cols=227 Identities=14% Similarity=0.167 Sum_probs=128.0
Q ss_pred cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc--c--eeeccCCcccccce-
Q 025758 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK--T--WKIDAGSRNIDLEL- 86 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~- 86 (248)
|..++||++++..|.-.+-.+...+++|.|++|+||||+++++++.+ .+..+.+..... + -...|..|+....+
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL-PEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh-cccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 67899999999988776666667789999999999999999999843 332222211000 0 00001111110000
Q ss_pred ee---ec-ccceeeeCC--CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 025758 87 TT---LS-SANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-- 158 (248)
Q Consensus 87 ~~---~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-- 158 (248)
.+ .. ....+.+.. ......+.......+..-......++-.+.+..+++|||++.|++..+..|+..+++..
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 00 00 001112111 01111111122222211111111122224456799999999999999999999997642
Q ss_pred ---------CCeeEEEEe-cCCC--cccHHHhhhh-heeeecCCCH-HHHHHHHHHHHH---------------------
Q 025758 159 ---------ASCRLILCC-NSSS--KVTEAIRSRC-LNIRINSPTE-EQIVKVLEFIAK--------------------- 203 (248)
Q Consensus 159 ---------~~~~~Il~t-~~~~--~~~~~l~sR~-~~i~~~~~~~-~~~~~il~~~~~--------------------- 203 (248)
....|++++ .++. .+.+++.+|+ ..+.+++|+. ++..+++.....
T Consensus 162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~ 241 (337)
T TIGR02030 162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA 241 (337)
T ss_pred EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence 112344443 3332 5888999999 5678877775 666666655211
Q ss_pred --------HcCCCCCHHHHHHHHHHc---cc-cHHHHHHHHHHHhhhc
Q 025758 204 --------KEGLQLPSGFATRLAEKS---NR-SLRRAILSFETCRVQQ 239 (248)
Q Consensus 204 --------~~~~~~~~~~~~~l~~~~---~g-~~r~~~~~l~~~~~~~ 239 (248)
-..+.+++++++++++.+ +. +.|..+.++..+...+
T Consensus 242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 024568888888887544 22 4788887776665443
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.63 E-value=2.1e-14 Score=120.50 Aligned_cols=229 Identities=17% Similarity=0.221 Sum_probs=133.8
Q ss_pred ccCCCC-CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 5 DKYRPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 5 ~ky~p~-~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
++-+|. .|.+++||++++..|...+.+.++.+++|.|++||||||+|+.+++.+.+.. .+. +.+|. ..+....+
T Consensus 8 ~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~--~~~--~~pf~-~~p~~p~~ 82 (350)
T CHL00081 8 KKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIE--VVK--DDPFN-SHPSDPEL 82 (350)
T ss_pred hccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcC--ccC--CCCCC-CCCCChhh
Confidence 344444 7999999999999999998888888899999999999999999998553322 111 11111 01110000
Q ss_pred c--ceee-ec----------ccceeeeCC--CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHH
Q 025758 84 L--ELTT-LS----------SANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQH 148 (248)
Q Consensus 84 ~--~~~~-~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~ 148 (248)
. .+.. .. ....+.+.. ......+..+....+..-......++-...+..++++||++.+++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~ 162 (350)
T CHL00081 83 MSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 162 (350)
T ss_pred hchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHH
Confidence 0 0000 00 000001100 0111111111222221111110112223456679999999999999999
Q ss_pred HHHHHHHHhc-----------CCeeEEEEec-CCC--cccHHHhhhh-heeeecCCC-HHHHHHHHHHHHH---------
Q 025758 149 SLRRTMEKYS-----------ASCRLILCCN-SSS--KVTEAIRSRC-LNIRINSPT-EEQIVKVLEFIAK--------- 203 (248)
Q Consensus 149 ~ll~~le~~~-----------~~~~~Il~t~-~~~--~~~~~l~sR~-~~i~~~~~~-~~~~~~il~~~~~--------- 203 (248)
.|++.+++.. ....|+++++ ++. .+.+++.+|+ ..+.+.+|+ .+...+++.+...
T Consensus 163 ~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~ 242 (350)
T CHL00081 163 ILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFR 242 (350)
T ss_pred HHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhh
Confidence 9999998631 1123555543 332 5899999999 578888887 4666666655321
Q ss_pred -----------------H---cCCCCCHHHHHHHHHHcc----ccHHHHHHHHHHHhhh
Q 025758 204 -----------------K---EGLQLPSGFATRLAEKSN----RSLRRAILSFETCRVQ 238 (248)
Q Consensus 204 -----------------~---~~~~~~~~~~~~l~~~~~----g~~r~~~~~l~~~~~~ 238 (248)
+ ..+.++++++.++++.+. .+.|..+-+++.+...
T Consensus 243 ~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~ 301 (350)
T CHL00081 243 EKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKAL 301 (350)
T ss_pred hhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHH
Confidence 0 256688888888876542 2578777777665543
No 147
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.63 E-value=9.8e-14 Score=114.06 Aligned_cols=204 Identities=17% Similarity=0.194 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee-cccceee
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL-SSANHVE 96 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 96 (248)
+..+...+...++.+ .+.++++||+|+||||+++.++..+.+.. +..... ..+.... .... ......+
T Consensus 28 ~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~---~~~~~~---~~~~~~~----~~~l~~i~~~lG 96 (269)
T TIGR03015 28 HKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQER---VVAAKL---VNTRVDA----EDLLRMVAADFG 96 (269)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCC---eEEeee---eCCCCCH----HHHHHHHHHHcC
Confidence 445555666555432 23488999999999999999998664221 111000 0000000 0000 0011112
Q ss_pred eCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC---eeEEEEecCCC--
Q 025758 97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS---CRLILCCNSSS-- 171 (248)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~---~~~Il~t~~~~-- 171 (248)
+... +.............+.... ..+.+.+++|||++.+++...+.+..+.+....+ ..++++ ..+.
T Consensus 97 ~~~~--~~~~~~~~~~l~~~l~~~~-----~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~-g~~~~~ 168 (269)
T TIGR03015 97 LETE--GRDKAALLRELEDFLIEQF-----AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLV-GQPEFR 168 (269)
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHH-----hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEc-CCHHHH
Confidence 2211 1111111112111111110 1335679999999999988766665444322111 234444 3332
Q ss_pred -----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758 172 -----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG----LQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 172 -----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 240 (248)
.....+.+|+ ..+.+++++.+++.+++..++...+ ..++++.++.|.+.++|++|.+..+++.+...+.
T Consensus 169 ~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~ 247 (269)
T TIGR03015 169 ETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAF 247 (269)
T ss_pred HHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHH
Confidence 1234677785 5789999999999999999887654 3688999999999999999998888777755443
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.63 E-value=4.4e-15 Score=138.87 Aligned_cols=203 Identities=16% Similarity=0.266 Sum_probs=134.0
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
.+++.+|..+++++|+++.++.+...+.....++++|+||||+|||++++.+|..+.... -...+.+.
T Consensus 168 l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~-vp~~l~~~----------- 235 (857)
T PRK10865 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGE-VPEGLKGR----------- 235 (857)
T ss_pred HHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCC-CchhhCCC-----------
Confidence 467889999999999999988888888777777899999999999999999999763211 00000000
Q ss_pred ccceeeecccceeeeCCCC--cCcchh----HHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------HHH
Q 025758 83 DLELTTLSSANHVELSPSD--AGFQDR----YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------AQH 148 (248)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------~~~ 148 (248)
..+.+.... .+.... ..+...++.+.. ...+.|+||||++.+... +.+
T Consensus 236 ----------~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~--------~~~~~ILfIDEih~l~~~~~~~~~~d~~~ 297 (857)
T PRK10865 236 ----------RVLALDMGALVAGAKYRGEFEERLKGVLNDLAK--------QEGNVILFIDELHTMVGAGKADGAMDAGN 297 (857)
T ss_pred ----------EEEEEehhhhhhccchhhhhHHHHHHHHHHHHH--------cCCCeEEEEecHHHhccCCCCccchhHHH
Confidence 001111111 111111 123444444433 125679999999988532 456
Q ss_pred HHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 025758 149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE 219 (248)
Q Consensus 149 ~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~ 219 (248)
.|...+++ ....+|.+|+..+ ...+++.+||..|.++.|+.++...++.....+ .++.++++++...+.
T Consensus 298 ~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ 375 (857)
T PRK10865 298 MLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAT 375 (857)
T ss_pred Hhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHH
Confidence 66666543 3456777777665 478999999999999999999999999776654 256677887777654
Q ss_pred Hcc------ccHHHHHHHHHHHhh
Q 025758 220 KSN------RSLRRAILSFETCRV 237 (248)
Q Consensus 220 ~~~------g~~r~~~~~l~~~~~ 237 (248)
.+. .-+..|+.+++.++.
T Consensus 376 ls~ry~~~~~~pdkAi~LiD~aaa 399 (857)
T PRK10865 376 LSHRYIADRQLPDKAIDLIDEAAS 399 (857)
T ss_pred HhhccccCCCCChHHHHHHHHHhc
Confidence 431 125566666666654
No 149
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.7e-14 Score=124.04 Aligned_cols=172 Identities=19% Similarity=0.276 Sum_probs=119.0
Q ss_pred CcccccccHHHHHHHHHHhh----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 11 TLDQVIVHQDIAQNLKKLVT----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+|+++=|.+..+..|...+- -| .+| ++||+||||||||.+|+++|+++.-+-
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf---------------- 251 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF---------------- 251 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce----------------
Confidence 48888888888877766542 12 223 399999999999999999999873211
Q ss_pred CcccccceeeecccceeeeCCCC--cCc--chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH--------
Q 025758 79 SRNIDLELTTLSSANHVELSPSD--AGF--QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-------- 146 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-------- 146 (248)
+.+...+ .|. ...+.+++.++.... ..|.|+||||+|.+.+..
T Consensus 252 ----------------~~isApeivSGvSGESEkkiRelF~~A~~---------~aPcivFiDeIDAI~pkRe~aqreME 306 (802)
T KOG0733|consen 252 ----------------LSISAPEIVSGVSGESEKKIRELFDQAKS---------NAPCIVFIDEIDAITPKREEAQREME 306 (802)
T ss_pred ----------------EeecchhhhcccCcccHHHHHHHHHHHhc---------cCCeEEEeecccccccchhhHHHHHH
Confidence 1111111 111 233457777776553 357799999999987532
Q ss_pred ---HHHHHHHHHHhcC------CeeEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758 147 ---QHSLRRTMEKYSA------SCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (248)
Q Consensus 147 ---~~~ll~~le~~~~------~~~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 214 (248)
...|+..|+++.. .+.+|-+||.|+.+.++|+.- + ..|.+..|+.....+||..++..-.+.. +=.+
T Consensus 307 rRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~ 385 (802)
T KOG0733|consen 307 RRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDF 385 (802)
T ss_pred HHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCH
Confidence 3356777776632 245778899999999999864 4 5799999999999999999987654432 1226
Q ss_pred HHHHHHcccc
Q 025758 215 TRLAEKSNRS 224 (248)
Q Consensus 215 ~~l~~~~~g~ 224 (248)
..|++.+.|=
T Consensus 386 ~qlA~lTPGf 395 (802)
T KOG0733|consen 386 KQLAKLTPGF 395 (802)
T ss_pred HHHHhcCCCc
Confidence 6777776653
No 150
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=1.1e-14 Score=133.65 Aligned_cols=198 Identities=15% Similarity=0.233 Sum_probs=127.7
Q ss_pred CCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
+--.++.++|.+..++.+.+.+......+++|+||||+|||++|+.++..+........-.+...
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~--------------- 245 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI--------------- 245 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeE---------------
Confidence 34567788999988888888877766677999999999999999999986533221100000000
Q ss_pred eecccceeeeCCCC--cCcch----hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHHHHHHHH
Q 025758 88 TLSSANHVELSPSD--AGFQD----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR 152 (248)
Q Consensus 88 ~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~ll~ 152 (248)
+...... .+... .......++.+.. ..+.|++|||++.+- .+..+.|..
T Consensus 246 -------~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~---------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp 309 (758)
T PRK11034 246 -------YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ---------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKP 309 (758)
T ss_pred -------EeccHHHHhcccchhhhHHHHHHHHHHHHHh---------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH
Confidence 0110000 01111 1122333333332 245699999998762 122233344
Q ss_pred HHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccc
Q 025758 153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR 223 (248)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g 223 (248)
.+.. ....+|.+|+..+ ...+++.+||..|.++.|+.++...||..+..+ .++.++++++..++..+.+
T Consensus 310 ~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r 387 (758)
T PRK11034 310 LLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_pred HHhC--CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence 4432 3345666666543 468899999999999999999999999976554 4778999999888765532
Q ss_pred ------cHHHHHHHHHHHhhh
Q 025758 224 ------SLRRAILSFETCRVQ 238 (248)
Q Consensus 224 ------~~r~~~~~l~~~~~~ 238 (248)
-+..++.+|+.++..
T Consensus 388 yi~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 388 YINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred cccCccChHHHHHHHHHHHHh
Confidence 366999999998853
No 151
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.61 E-value=1.2e-14 Score=120.87 Aligned_cols=156 Identities=18% Similarity=0.230 Sum_probs=102.7
Q ss_pred CCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHH
Q 025758 33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ 111 (248)
Q Consensus 33 ~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (248)
+.|. ++|+||||+|||.+|+++|.++... .+.+++- ++.....| .+...++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~------------------------eL~sk~vG-EsEk~IR 197 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAG------------------------ELESENAG-EPGKLIR 197 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHH------------------------HhhcCcCC-cHHHHHH
Confidence 3444 9999999999999999999987332 1211111 11111111 1223456
Q ss_pred HHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH---------H---HHHHHHHHHHh--------------cCCeeEEE
Q 025758 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---------A---QHSLRRTMEKY--------------SASCRLIL 165 (248)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~---------~---~~~ll~~le~~--------------~~~~~~Il 165 (248)
+.+......... ...|.||+|||+|.+-+. . ...|+.+++.+ ...+.+|.
T Consensus 198 ~~F~~A~~~a~~----~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa 273 (413)
T PLN00020 198 QRYREAADIIKK----KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV 273 (413)
T ss_pred HHHHHHHHHhhc----cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE
Confidence 666655432211 347889999999865321 1 13455555432 33467899
Q ss_pred EecCCCcccHHHhh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758 166 CCNSSSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (248)
Q Consensus 166 ~t~~~~~~~~~l~s--R~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g 223 (248)
+||+++.+.++|++ |+... |..|+.++..+|++.++.+.++ +.+.+..|++.+.|
T Consensus 274 TTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~g 330 (413)
T PLN00020 274 TGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPG 330 (413)
T ss_pred eCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCC
Confidence 99999999999998 77543 4589999999999988877654 47788888887755
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=1.1e-14 Score=136.20 Aligned_cols=201 Identities=17% Similarity=0.263 Sum_probs=135.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
++=+...++.++|.++.++.+..++.....++++|+||||+|||++++.+|..+........ ..+..
T Consensus 171 ~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~-l~~~~------------ 237 (821)
T CHL00095 171 KEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI-LEDKL------------ 237 (821)
T ss_pred HHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcCCe------------
Confidence 34456678999999999999999998777778999999999999999999997643211100 00000
Q ss_pred ceeeecccceeeeCCCC--cCcc----hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------HHHHHH
Q 025758 85 ELTTLSSANHVELSPSD--AGFQ----DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSL 150 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~l 150 (248)
.+.+.... .+.. ....+...++.+.. ..+.|+||||++.+.. ...+.|
T Consensus 238 ---------i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~---------~~~~ILfiDEih~l~~~g~~~g~~~~a~lL 299 (821)
T CHL00095 238 ---------VITLDIGLLLAGTKYRGEFEERLKRIFDEIQE---------NNNIILVIDEVHTLIGAGAAEGAIDAANIL 299 (821)
T ss_pred ---------EEEeeHHHHhccCCCccHHHHHHHHHHHHHHh---------cCCeEEEEecHHHHhcCCCCCCcccHHHHh
Confidence 01111110 0111 11223444444432 2456999999986632 234444
Q ss_pred HHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHc
Q 025758 151 RRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKS 221 (248)
Q Consensus 151 l~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~ 221 (248)
...+. .....+|.+|+..+ +..+.+.+|+..+.++.|+.++...++...... .++.++++++..++..+
T Consensus 300 kp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls 377 (821)
T CHL00095 300 KPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS 377 (821)
T ss_pred HHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 44444 23456777777654 367899999999999999999998888876543 36678999999988776
Q ss_pred cc---c---HHHHHHHHHHHhhh
Q 025758 222 NR---S---LRRAILSFETCRVQ 238 (248)
Q Consensus 222 ~g---~---~r~~~~~l~~~~~~ 238 (248)
.+ + ++.++++|+.++..
T Consensus 378 ~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 378 DQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred hccCccccCchHHHHHHHHHHHH
Confidence 53 3 88899999998854
No 153
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.60 E-value=1.8e-13 Score=111.87 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=80.1
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHHHHhc----------------CCeeEEEEecCCC-----cccHHHhhhhheeeecCC
Q 025758 131 FKVLVLNEVDKLSREAQHSLRRTMEKYS----------------ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSP 189 (248)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~ll~~le~~~----------------~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~ 189 (248)
..+++|||++.++++.++.|+.++++.. .+..+|+++|... .+.+++.+||..+.++.|
T Consensus 106 g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P 185 (262)
T TIGR02640 106 GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYP 185 (262)
T ss_pred CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCC
Confidence 3599999999999999999999997531 1345777777652 568899999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------cccHHHHHHHHHHHhhhc
Q 025758 190 TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS----------NRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 190 ~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~----------~g~~r~~~~~l~~~~~~~ 239 (248)
+.++..+|+...+ .++++..+.+++.. .-..|.++.....+...+
T Consensus 186 ~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~ 240 (262)
T TIGR02640 186 DIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQD 240 (262)
T ss_pred CHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcC
Confidence 9999999998653 45677777776443 123788888777766554
No 154
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=1.6e-14 Score=110.23 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=93.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe-------------eeecCCCHHHHHHHHHH
Q 025758 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN-------------IRINSPTEEQIVKVLEF 200 (248)
Q Consensus 134 iiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~-------------i~~~~~~~~~~~~il~~ 200 (248)
++|+++++|+.++.|+|+|++|+|+.++.||++|+++..++++++|||+. +.|.+.+.+++.+.+..
T Consensus 58 ~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 58 IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999975 77899999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758 201 IAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 236 (248)
+.++++...++..+.|+..+.|.+|+++.+.++..
T Consensus 138 -~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l 172 (206)
T PRK08485 138 -LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL 172 (206)
T ss_pred -HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 78888888899999999999999999977665544
No 155
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=1.3e-15 Score=116.98 Aligned_cols=167 Identities=19% Similarity=0.311 Sum_probs=106.1
Q ss_pred CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec---------cCCcc
Q 025758 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID---------AGSRN 81 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~---------~~~~~ 81 (248)
++..-+|..++++.+.-.+..|.. +.++||+||||||++|++.. |..+++|.+.++|...... .+..+
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHC-CcCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 344457777888888877777643 66999999999999999998 8999999999999543211 11111
Q ss_pred cccc-eeeecccceeeeCCCCc-Ccch---hHHHHHHH-----HHHHhcCCCcCCC------------CCCeeEEEEeCC
Q 025758 82 IDLE-LTTLSSANHVELSPSDA-GFQD---RYVVQEVI-----KEMAKNRPIDTKG------------KRGFKVLVLNEV 139 (248)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-----~~~~~~~~~~~~~------------~~~~~viiiDE~ 139 (248)
..++ ++..++.+++.+.+-.. +.+. ...+.+.+ ..-+..+|..+|+ .-+|+++++|||
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP 163 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP 163 (240)
T ss_pred ccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC
Confidence 1111 11111222222222111 1111 11122222 2234567888885 337999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhh
Q 025758 140 -DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 140 -d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~ 181 (248)
..|||+.....+.++.+....+ +.|+.||+ -.+...+.+|+
T Consensus 164 TSALDPElv~EVL~vm~~LA~eGmTMivVTHE-M~FAr~Vadrv 206 (240)
T COG1126 164 TSALDPELVGEVLDVMKDLAEEGMTMIIVTHE-MGFAREVADRV 206 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCeEEEEech-hHHHHHhhheE
Confidence 8999999999999999987665 45555554 56666777776
No 156
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-14 Score=127.41 Aligned_cols=201 Identities=19% Similarity=0.230 Sum_probs=132.0
Q ss_pred CCCcccccccHHHHHHHHHHhh-----------cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~-----------~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
-.+|.|+.|.+++++.+...+. .+++|. ++++||||||||.+|+++|++..- +|.+.
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V-----------PFf~i 214 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-----------PFFSI 214 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC-----------Cceec
Confidence 3689999999999998887763 345665 999999999999999999986522 22211
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-----------
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----------- 145 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----------- 145 (248)
+++. ++++... .+..-+++.+....+ +.|.|++|||+|..+..
T Consensus 215 SGS~-------------FVemfVG----vGAsRVRdLF~qAkk---------~aP~IIFIDEiDAvGr~Rg~g~Gggnde 268 (596)
T COG0465 215 SGSD-------------FVEMFVG----VGASRVRDLFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLGGGNDE 268 (596)
T ss_pred cchh-------------hhhhhcC----CCcHHHHHHHHHhhc---------cCCCeEEEehhhhcccccCCCCCCCchH
Confidence 2211 1221110 112235666665543 45679999999987532
Q ss_pred ---HHHHHHHHHHHhcCCe--eEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758 146 ---AQHSLRRTMEKYSASC--RLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (248)
Q Consensus 146 ---~~~~ll~~le~~~~~~--~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l 217 (248)
..|.++--++....+. .+|-.||.++-+.++|..- + +.|..+.|+...+.+|++-++.+..+..+ -.+..+
T Consensus 269 rEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vdl~~i 347 (596)
T COG0465 269 REQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VDLKKI 347 (596)
T ss_pred HHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CCHHHH
Confidence 3455666666555433 3344466666677888653 3 68999999999999999976666555522 225558
Q ss_pred HHHccc-cHHHHHHHHHHHhhhcccccCCCC
Q 025758 218 AEKSNR-SLRRAILSFETCRVQQLRFTMPSV 247 (248)
Q Consensus 218 ~~~~~g-~~r~~~~~l~~~~~~~~~~~~~~v 247 (248)
++.+.| ...++.|+++.+...+.+.....|
T Consensus 348 Ar~tpGfsGAdL~nl~NEAal~aar~n~~~i 378 (596)
T COG0465 348 ARGTPGFSGADLANLLNEAALLAARRNKKEI 378 (596)
T ss_pred hhhCCCcccchHhhhHHHHHHHHHHhcCeeE
Confidence 888776 467777888887776665544433
No 157
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.59 E-value=1.3e-15 Score=127.29 Aligned_cols=151 Identities=21% Similarity=0.287 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceee
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (248)
|...+++.+...+..|.. +.|.||||+||||+++++++ +..+++|.+.++|.+....... ....++
T Consensus 18 ~~~~~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~G-l~~p~~G~v~i~G~~~~~~~~~-----------~~~~ig 83 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLG-LTHPDAGSISLCGEPVPSRARH-----------ARQRVG 83 (306)
T ss_pred CCeEEEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEecccchHH-----------HHhcEE
Confidence 444456666666666643 56999999999999999998 7788999999988755311110 011234
Q ss_pred eCCCCcCcchhHHHHHHHHHHHhc---------------------------CCCcCCC------------CCCeeEEEEe
Q 025758 97 LSPSDAGFQDRYVVQEVIKEMAKN---------------------------RPIDTKG------------KRGFKVLVLN 137 (248)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~------------~~~~~viiiD 137 (248)
+.+.+.......++.+.+..+... ....+|+ ..+|+++|+|
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD 163 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 444333333333333332221111 1112221 4589999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758 138 EV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 138 E~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
|| ..||+.++..+++++.+.... ..+|++||+. ...+.+++|+.
T Consensus 164 EPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~ 209 (306)
T PRK13537 164 EPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLC 209 (306)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEE
Confidence 99 899999999999999987544 4555555554 44456677763
No 158
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.58 E-value=2.9e-14 Score=104.31 Aligned_cols=115 Identities=27% Similarity=0.355 Sum_probs=76.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (248)
++|+||||+|||++++.+|+.+. ...+.+++.. +. ..........+...+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~------------------------~~-~~~~~~~~~~i~~~~~~ 52 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSE------------------------LI-SSYAGDSEQKIRDFFKK 52 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTH------------------------HH-TSSTTHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---cccccccccc------------------------cc-ccccccccccccccccc
Confidence 68999999999999999999761 1111111100 00 01111222334444554
Q ss_pred HHhcCCCcCCCCCCeeEEEEeCCCCCCHHH-----------HHHHHHHHHHhcC---CeeEEEEecCCCcccHHHh-hhh
Q 025758 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREA-----------QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIR-SRC 181 (248)
Q Consensus 117 ~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-----------~~~ll~~le~~~~---~~~~Il~t~~~~~~~~~l~-sR~ 181 (248)
..... .+.|++|||+|.+.... .+.|++.++.... ...+|++||..+.+.+++. +||
T Consensus 53 ~~~~~--------~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf 124 (132)
T PF00004_consen 53 AKKSA--------KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRF 124 (132)
T ss_dssp HHHTS--------TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTS
T ss_pred ccccc--------cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCC
Confidence 43311 36899999999987665 6788888887754 3689999999999999999 998
Q ss_pred -heeeec
Q 025758 182 -LNIRIN 187 (248)
Q Consensus 182 -~~i~~~ 187 (248)
..+.++
T Consensus 125 ~~~i~~~ 131 (132)
T PF00004_consen 125 DRRIEFP 131 (132)
T ss_dssp EEEEEE-
T ss_pred cEEEEcC
Confidence 456554
No 159
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.2e-14 Score=122.34 Aligned_cols=176 Identities=22% Similarity=0.335 Sum_probs=117.9
Q ss_pred CCCcccccccHHHHHHHHHHhhc-----------C-CCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~~-----------~-~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~ 75 (248)
..+|+|+=+++++...|..++.. | ..|. +||+||||||||.+|+++|.+- ..+-+.+-|
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa---g~NFisVKG----- 578 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA---GANFISVKG----- 578 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc---cCceEeecC-----
Confidence 36889987888888888877631 1 2344 9999999999999999999854 111111111
Q ss_pred ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------- 144 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------- 144 (248)
+. +....-| .....++..+.... .+.|.|||+||+|.|-+
T Consensus 579 ----------------PE---LlNkYVG-ESErAVR~vFqRAR---------~saPCVIFFDEiDaL~p~R~~~~s~~s~ 629 (802)
T KOG0733|consen 579 ----------------PE---LLNKYVG-ESERAVRQVFQRAR---------ASAPCVIFFDEIDALVPRRSDEGSSVSS 629 (802)
T ss_pred ----------------HH---HHHHHhh-hHHHHHHHHHHHhh---------cCCCeEEEecchhhcCcccCCCCchhHH
Confidence 10 0000001 01112444444333 34688999999998842
Q ss_pred HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 025758 145 EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-ATRLA 218 (248)
Q Consensus 145 ~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~~~l~ 218 (248)
...|.||.-++.. ..++.+|-.||.|+-+.++++.-. ..+..+.|+.++..+||+.+..+.+..+++++ ++.|+
T Consensus 630 RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 630 RVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIA 709 (802)
T ss_pred HHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence 2355666666654 345678888999999999998755 57888999999999999998886666666555 77777
Q ss_pred HHc
Q 025758 219 EKS 221 (248)
Q Consensus 219 ~~~ 221 (248)
...
T Consensus 710 ~~~ 712 (802)
T KOG0733|consen 710 RNT 712 (802)
T ss_pred hcc
Confidence 443
No 160
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.58 E-value=1.2e-15 Score=119.79 Aligned_cols=165 Identities=15% Similarity=0.290 Sum_probs=107.2
Q ss_pred cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecc
Q 025758 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (248)
+..-+++..+++.+...+++|. .++|.||+||||||+.++|-+ +..+++|.+.++|.++... ....-
T Consensus 7 vsk~y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINr-Liept~G~I~i~g~~i~~~----------d~~~L 73 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINR-LIEPTSGEILIDGEDISDL----------DPVEL 73 (309)
T ss_pred eehhcCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhc-ccCCCCceEEECCeecccC----------CHHHH
Confidence 3444666777777777776663 467999999999999999998 8899999999999876511 11111
Q ss_pred cceeeeCCCCcCcchhHHHHHH----------------------H-------HHHHhcCCCcCCC------------CCC
Q 025758 92 ANHVELSPSDAGFQDRYVVQEV----------------------I-------KEMAKNRPIDTKG------------KRG 130 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~----------------------~-------~~~~~~~~~~~~~------------~~~ 130 (248)
...++|.....+..+..++.+. + ..+...+|..+|+ ..+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 1223333333333333333222 2 2345557778885 447
Q ss_pred eeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhh------heeeecCCC
Q 025758 131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC------LNIRINSPT 190 (248)
Q Consensus 131 ~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~------~~i~~~~~~ 190 (248)
|.++++||| ..+||-.+..+-..+.+..+ ..+||+.||+.++-. .+-+|. .++.+..|.
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~-kLadri~vm~~G~i~Q~~~P~ 221 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEAL-KLADRIAVMDAGEIVQYDTPD 221 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHH-hhhceEEEecCCeEEEeCCHH
Confidence 999999999 88998666655555544432 357899998876544 455665 456666653
No 161
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.58 E-value=1.3e-15 Score=121.92 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=106.0
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-Ccccccce--------e
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLEL--------T 87 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~ 87 (248)
+.+.+++.++..++.|.. +.+.||||||||||.+++++ +..+..|.+.++|+++..-.+ ...+...+ .
T Consensus 13 ~~~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g-~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 13 GGKPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAG-LLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred CCeeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 445566677777766654 55999999999999999998 778999999999975541111 00000000 0
Q ss_pred eecccce--------eeeCCCCcCcchhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758 88 TLSSANH--------VELSPSDAGFQDRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 88 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
..++.+. ..+.. ..+..+...+.+.++. ++...-..+|+ .++++++++||| .+
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~ 168 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168 (258)
T ss_pred CcEEeehHhhcCCccccccc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccc
Confidence 0011111 11111 1111122233333333 23333334553 568999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhh------heeeecCCCHHHHHHHHHHH
Q 025758 142 LSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRC------LNIRINSPTEEQIVKVLEFI 201 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~------~~i~~~~~~~~~~~~il~~~ 201 (248)
||...+-.+++++.+.... ..+|++.|++. ..-.+.++. .++....|..-...+.+..+
T Consensus 169 LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~V 235 (258)
T COG1120 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVLTEENLREV 235 (258)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHH
Confidence 9999999999999988633 56777777753 333555554 34555565544444444443
No 162
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.58 E-value=3.7e-14 Score=129.14 Aligned_cols=195 Identities=17% Similarity=0.249 Sum_probs=123.3
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhh-----------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
......+|.++.|...+++.+...+. .+..+ +++|+||+|+|||++++++++.+..+- +.+++..
T Consensus 144 ~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is~~~ 220 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGSD 220 (644)
T ss_pred chhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEehHH
Confidence 33445788999998888877766542 12333 499999999999999999998763211 1111110
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------- 144 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------- 144 (248)
+ ... ..+. ....+++.+.... ...|.|++|||+|.+..
T Consensus 221 ~---------------------~~~---~~g~-~~~~~~~~f~~a~---------~~~P~IifIDEiD~l~~~r~~~~~g 266 (644)
T PRK10733 221 F---------------------VEM---FVGV-GASRVRDMFEQAK---------KAAPCIIFIDEIDAVGRQRGAGLGG 266 (644)
T ss_pred h---------------------HHh---hhcc-cHHHHHHHHHHHH---------hcCCcEEEehhHhhhhhccCCCCCC
Confidence 0 000 0010 1112344444332 23567999999988732
Q ss_pred ------HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758 145 ------EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (248)
Q Consensus 145 ------~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 213 (248)
...+.++..++.... ...+|.+||+++.+.+++.+ |+ ..+.++.|+.+++..++...+.+..+..+ -.
T Consensus 267 ~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-~d 345 (644)
T PRK10733 267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-ID 345 (644)
T ss_pred CchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-CC
Confidence 123455555555433 35678889999999999985 77 78999999999999999988876554322 22
Q ss_pred HHHHHHHccc-cHHHHHHHHHHHhh
Q 025758 214 ATRLAEKSNR-SLRRAILSFETCRV 237 (248)
Q Consensus 214 ~~~l~~~~~g-~~r~~~~~l~~~~~ 237 (248)
+..+++.+.| +.+++.++++.+..
T Consensus 346 ~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 346 AAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 5667777766 44555555555443
No 163
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=1.2e-13 Score=118.98 Aligned_cols=191 Identities=20% Similarity=0.264 Sum_probs=110.7
Q ss_pred ccccHHHHHHHHHHhhc-------C---------CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 15 VIVHQDIAQNLKKLVTE-------Q---------DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 15 lig~~~~~~~l~~~~~~-------~---------~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
++||+.+++.+...+.+ + ...+++|+||+|||||++|+++|..+..+- +.+++.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---~~id~~------- 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---AIADAT------- 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc---eecchh-------
Confidence 58999999988665521 1 124599999999999999999998663211 111110
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------------
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------- 144 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------------- 144 (248)
.+... +.. +......+..+.......+ ....+.|++|||+|.+.+
T Consensus 143 -----------------~l~~~--gyv-G~d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~ 201 (412)
T PRK05342 143 -----------------TLTEA--GYV-GEDVENILLKLLQAADYDV-EKAQRGIVYIDEIDKIARKSENPSITRDVSGE 201 (412)
T ss_pred -----------------hcccC--Ccc-cchHHHHHHHHHHhccccH-HHcCCcEEEEechhhhccccCCCCcCCCcccH
Confidence 00000 000 0112222222211111111 133567999999999965
Q ss_pred HHHHHHHHHHHHhc-----C--------CeeEEEEecC--------C---------------------C-----------
Q 025758 145 EAQHSLRRTMEKYS-----A--------SCRLILCCNS--------S---------------------S----------- 171 (248)
Q Consensus 145 ~~~~~ll~~le~~~-----~--------~~~~Il~t~~--------~---------------------~----------- 171 (248)
..+++|+++||... . +..+|.|+|- . .
T Consensus 202 ~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 281 (412)
T PRK05342 202 GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGEL 281 (412)
T ss_pred HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHH
Confidence 37899999998421 0 1112222221 0 0
Q ss_pred ------------cccHHHhhhh-heeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHcc---
Q 025758 172 ------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKSN--- 222 (248)
Q Consensus 172 ------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~----~-------~~~~~~--~~~~~~~~~l~~~~~--- 222 (248)
.+.|.+..|+ .++.|.+++.+++..|+.. . +...++ .++++++++|++.+.
T Consensus 282 ~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~ 361 (412)
T PRK05342 282 LKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERK 361 (412)
T ss_pred HHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCC
Confidence 1355666777 5789999999999999972 2 233444 588999999998742
Q ss_pred ccHHHHHHHHHHHh
Q 025758 223 RSLRRAILSFETCR 236 (248)
Q Consensus 223 g~~r~~~~~l~~~~ 236 (248)
-.+|.+-..++...
T Consensus 362 ~GAR~Lrriie~~l 375 (412)
T PRK05342 362 TGARGLRSILEEIL 375 (412)
T ss_pred CCCchHHHHHHHHh
Confidence 12444444444433
No 164
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.57 E-value=1.2e-15 Score=127.35 Aligned_cols=168 Identities=14% Similarity=0.262 Sum_probs=112.1
Q ss_pred ccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc------cccc-
Q 025758 13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN------IDLE- 85 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~- 85 (248)
..-+|...+++.+.-.+.+|. .+.|.||+||||||+.|+||+ +..+++|.|.++|+++....|..+ ..|.
T Consensus 12 ~k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAG-fe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YAL 88 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYAL 88 (352)
T ss_pred eeecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhhcccceeecCccc
Confidence 334565556666666666663 366999999999999999998 889999999999988765444322 2222
Q ss_pred eeeecccceeeeCCCCcC-cchh---HHHHHHH-----HHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 86 LTTLSSANHVELSPSDAG-FQDR---YVVQEVI-----KEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~-----~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
++.+++.+++.|...-.. .... ..+.+++ ..+...+|..+|+ ..+|+++++||+ ..||
T Consensus 89 FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD 168 (352)
T COG3842 89 FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168 (352)
T ss_pred CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence 344455566665554222 1211 1333332 3345556667774 448999999999 8999
Q ss_pred HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+..+..-+.+... ..++|+.||+.++-+ ++.+|+.+.
T Consensus 169 ~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl-~msDrI~Vm 210 (352)
T COG3842 169 AKLREQMRKELKELQRELGITFVYVTHDQEEAL-AMSDRIAVM 210 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhccceEEc
Confidence 8877777666655532 468999999977655 677887443
No 165
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.6e-14 Score=113.25 Aligned_cols=174 Identities=23% Similarity=0.286 Sum_probs=117.2
Q ss_pred CCcccccccHHHHHHHHHHh----------hcCCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758 10 KTLDQVIVHQDIAQNLKKLV----------TEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~----------~~~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~ 77 (248)
..|+|+.|.+.+++.|+..+ ..++.| ++||+||||+|||.||+++|.+.+ +.-
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn---STF------------ 194 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN---STF------------ 194 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC---Cce------------
Confidence 57899999999999999876 234433 499999999999999999998542 111
Q ss_pred CCcccccceeeecccceeeeCCCCcC---cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-------HH-
Q 025758 78 GSRNIDLELTTLSSANHVELSPSDAG---FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------EA- 146 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------~~- 146 (248)
+.+..++.- ..+.+.+...+-.++. ++.|.||+|||+|.+.. ++
T Consensus 195 -----------------FSvSSSDLvSKWmGESEkLVknLFemAR--------e~kPSIIFiDEiDslcg~r~enEseas 249 (439)
T KOG0739|consen 195 -----------------FSVSSSDLVSKWMGESEKLVKNLFEMAR--------ENKPSIIFIDEIDSLCGSRSENESEAS 249 (439)
T ss_pred -----------------EEeehHHHHHHHhccHHHHHHHHHHHHH--------hcCCcEEEeehhhhhccCCCCCchHHH
Confidence 122222211 1122223333333443 45778999999997731 11
Q ss_pred ---HHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 025758 147 ---QHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (248)
Q Consensus 147 ---~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~ 219 (248)
...|+--+..- ...+.++-.||-+-.+..+++.|+ ..|.++.|........++-.+..-...+.+..+..+++
T Consensus 250 RRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~ 329 (439)
T KOG0739|consen 250 RRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELAR 329 (439)
T ss_pred HHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHh
Confidence 22344333321 122334555677778889999999 58999999999888888887777777888999999987
Q ss_pred Hccc
Q 025758 220 KSNR 223 (248)
Q Consensus 220 ~~~g 223 (248)
.++|
T Consensus 330 kTeG 333 (439)
T KOG0739|consen 330 KTEG 333 (439)
T ss_pred hcCC
Confidence 7654
No 166
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=8.6e-15 Score=116.70 Aligned_cols=158 Identities=17% Similarity=0.254 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee--------cc
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL--------SS 91 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 91 (248)
.+++.+...+..|.. +.+.||||+||||+++++.+ +..+..|.+.+.+.+.....+.....|--+.. ++
T Consensus 18 ~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLG-ll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILG-LLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 577777777777754 44999999999999999998 78999999999887654222211111111100 11
Q ss_pred cceeeeC--CCC-----cCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 92 ANHVELS--PSD-----AGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 92 ~~~~~~~--~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+.+... ... ....+...+.+.++.. ....-..+|+ .++|++++|||| ..+|+..
T Consensus 95 ~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~ 174 (254)
T COG1121 95 KDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174 (254)
T ss_pred HHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH
Confidence 1111111 000 0011123344444332 2222224553 568999999999 8999999
Q ss_pred HHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhh
Q 025758 147 QHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 147 ~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~ 181 (248)
+..++.+|.+....+ .+++++++...+. +..+|.
T Consensus 175 ~~~i~~lL~~l~~eg~tIl~vtHDL~~v~-~~~D~v 209 (254)
T COG1121 175 QKEIYDLLKELRQEGKTVLMVTHDLGLVM-AYFDRV 209 (254)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCcHHhH-hhCCEE
Confidence 999999999886654 5666666655555 555766
No 167
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=5.1e-15 Score=116.62 Aligned_cols=162 Identities=16% Similarity=0.230 Sum_probs=102.3
Q ss_pred cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---cccc-ceeeecc
Q 025758 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDL-ELTTLSS 91 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 91 (248)
++...+++.+...+..|. .+.+.||+||||||+.+++|+ +..+.+|.+.++|.+.....+.. ++.+ -+++.++
T Consensus 13 f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAG-L~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv 89 (248)
T COG1116 13 FGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAG-LEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTV 89 (248)
T ss_pred eCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhH
Confidence 344455556666666554 467999999999999999998 88999999999997653111111 1111 1344455
Q ss_pred cceeeeCCCCcCcchh---HHHHHHHH-----HHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHH
Q 025758 92 ANHVELSPSDAGFQDR---YVVQEVIK-----EMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSL 150 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~l 150 (248)
.+++.+.....+.... ..+.+.++ .+...+|..+|+ ..+|+++++||| ..||.-....+
T Consensus 90 ~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~l 169 (248)
T COG1116 90 LDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL 169 (248)
T ss_pred HhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHH
Confidence 5666666554442222 22344433 356677888885 558999999999 88887655544
Q ss_pred HHHHHHh--cCCeeEEEEecCCCcccHHHhhhh
Q 025758 151 RRTMEKY--SASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 151 l~~le~~--~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
...+.+. ....+++++||+.++-. .+.+|+
T Consensus 170 q~~l~~lw~~~~~TvllVTHdi~EAv-~LsdRi 201 (248)
T COG1116 170 QDELLRLWEETRKTVLLVTHDVDEAV-YLADRV 201 (248)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHH-hhhCEE
Confidence 4444333 12367889999876433 334444
No 168
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.5e-14 Score=113.21 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=101.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+++.++..+..|..-+ +.|++||||||++|++++ +..+..|.+.++|.+.....+....+...+. .++-.
T Consensus 22 ~l~~VS~~i~~Ge~lg--ivGeSGsGKSTL~r~l~G-l~~p~~G~I~~~G~~~~~~~~~~~~~~~VQm-------VFQDp 91 (252)
T COG1124 22 ALNNVSLEIERGETLG--IVGESGSGKSTLARLLAG-LEKPSSGSILLDGKPLAPKKRAKAFYRPVQM-------VFQDP 91 (252)
T ss_pred hhcceeEEecCCCEEE--EEcCCCCCHHHHHHHHhc-ccCCCCceEEECCcccCccccchhhccceeE-------EecCC
Confidence 6666666666665545 999999999999999998 8899999999999755422211111011110 11111
Q ss_pred CcCcchhHH--------------------HHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758 101 DAGFQDRYV--------------------VQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 101 ~~~~~~~~~--------------------~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
.....+..+ +.++++. +...+|..+|+ ..+|+++|+||+ ..
T Consensus 92 ~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSa 171 (252)
T COG1124 92 YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171 (252)
T ss_pred ccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence 111111111 2333322 34446667775 348999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhheeee
Q 025758 142 LSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIRI 186 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i~~ 186 (248)
||...|..++.++.+.... ..+|++||+ -.+..-+++|+.+..-
T Consensus 172 LD~siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cdRi~Vm~~ 217 (252)
T COG1124 172 LDVSVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDN 217 (252)
T ss_pred hcHHHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhhheeeeeC
Confidence 9999999999999877543 478888877 5566789999855443
No 169
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.56 E-value=4.9e-13 Score=120.04 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=131.2
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
.+++.-++++++|+....+.+.+.+.. ....+|+|+|++||||+++|+.|..........-+.+++..+.
T Consensus 188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~-------- 259 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS-------- 259 (534)
T ss_pred cccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC--------
Confidence 356667899999998888777766543 2334599999999999999999997433233233333221110
Q ss_pred ccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhc---------CCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHH
Q 025758 83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT 153 (248)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~ 153 (248)
+ ......+ +... ...+.....+...++|||++.|++..+..|+++
T Consensus 260 -----------------------~-~~~~~~l--fg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~ 313 (534)
T TIGR01817 260 -----------------------E-TLLESEL--FGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRV 313 (534)
T ss_pred -----------------------H-HHHHHHH--cCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHH
Confidence 0 0000000 0000 000111133556899999999999999999999
Q ss_pred HHHhc-----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCC--HHHHHHHHHHHHHH----c--
Q 025758 154 MEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPT--EEQIVKVLEFIAKK----E-- 205 (248)
Q Consensus 154 le~~~-----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~--~~~~~~il~~~~~~----~-- 205 (248)
+++.. .+.++|++|+... .+.+.|..|+ ..|.+|++. .+++..++...+.+ .
T Consensus 314 l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~ 393 (534)
T TIGR01817 314 LQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR 393 (534)
T ss_pred HhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCC
Confidence 98632 1356788876552 3555666776 467788776 45565555555442 1
Q ss_pred CCCCCHHHHHHHHHH-ccccHHHHHHHHHHHhhhc
Q 025758 206 GLQLPSGFATRLAEK-SNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 206 ~~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 239 (248)
...++++++..|... ..||+|++.+.++.+....
T Consensus 394 ~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 394 PLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred CCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 256899999999988 4999999999999988643
No 170
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.55 E-value=1.1e-13 Score=128.38 Aligned_cols=177 Identities=19% Similarity=0.302 Sum_probs=115.3
Q ss_pred CCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~ 74 (248)
...+|+|+.|.+.+++.+..++.. ....+++|+||||||||++|+++|+.+..+ .+.+++..+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~---~i~i~~~~i- 248 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY---FISINGPEI- 248 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEecHHH-
Confidence 456899999999999888877631 112349999999999999999999966211 111111100
Q ss_pred eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-----------
Q 025758 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------- 143 (248)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----------- 143 (248)
.....+ .....+...+.... ...+.+++|||+|.+.
T Consensus 249 -----------------------~~~~~g-~~~~~l~~lf~~a~---------~~~p~il~iDEid~l~~~r~~~~~~~~ 295 (733)
T TIGR01243 249 -----------------------MSKYYG-ESEERLREIFKEAE---------ENAPSIIFIDEIDAIAPKREEVTGEVE 295 (733)
T ss_pred -----------------------hccccc-HHHHHHHHHHHHHH---------hcCCcEEEeehhhhhcccccCCcchHH
Confidence 000011 11122344444333 2356799999998763
Q ss_pred HHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 025758 144 REAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRL 217 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~l 217 (248)
....+.|+..++..... ..+|.+||.+..+.+++++ |+ ..+.++.|+.++...+++..... +.+. +..++.+
T Consensus 296 ~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~l 373 (733)
T TIGR01243 296 KRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKL 373 (733)
T ss_pred HHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHH
Confidence 23466788888765433 3456678888889999876 66 57999999999999999865543 3332 3347777
Q ss_pred HHHccc
Q 025758 218 AEKSNR 223 (248)
Q Consensus 218 ~~~~~g 223 (248)
++.+.|
T Consensus 374 a~~t~G 379 (733)
T TIGR01243 374 AEVTHG 379 (733)
T ss_pred HHhCCC
Confidence 777765
No 171
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.55 E-value=3.6e-15 Score=126.05 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
.+++.+...+..|.. +.|.||||+||||+++++++ +..+.+|.+.++|.+........ ...+++.+
T Consensus 55 ~~l~~is~~i~~Gei--~gLlGpNGaGKSTLl~~L~G-l~~p~~G~i~i~G~~~~~~~~~~-----------~~~ig~v~ 120 (340)
T PRK13536 55 AVVNGLSFTVASGEC--FGLLGPNGAGKSTIARMILG-MTSPDAGKITVLGVPVPARARLA-----------RARIGVVP 120 (340)
T ss_pred EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCceEEEECCEECCcchHHH-----------hccEEEEe
Confidence 344555555555533 56999999999999999998 77899999999997543111100 01122222
Q ss_pred CCcCcchhHHHHH----------------------HHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 100 SDAGFQDRYVVQE----------------------VIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 100 ~~~~~~~~~~~~~----------------------~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.........++.+ .++.+. ......+|+ ..+|+++|+|||
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 2222211111111 121110 111112221 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..||+..+..+++++.+.......|++++|.....+.+++|+.+
T Consensus 201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~i 244 (340)
T PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCV 244 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 89999999999999988754444444444444555677777743
No 172
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-13 Score=113.42 Aligned_cols=184 Identities=23% Similarity=0.291 Sum_probs=114.9
Q ss_pred CCcccccccHHHHHHHHHHhh----------cCC---C-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVT----------EQD---C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~----------~~~---~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~ 75 (248)
.+|+|+-|.+.+++.++..+- .++ . .+++|+||||+|||-+|+++|.+..+ .+..+.+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga-~fInv~~s------ 161 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA-NFINVSVS------ 161 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC-Ccceeecc------
Confidence 478899999999999987651 222 2 24999999999999999999997522 11111110
Q ss_pred ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------HHH--
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------REA-- 146 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------~~~-- 146 (248)
...+..+.+.+.....+-.++. +=.|.+|+|||+|.+- .++
T Consensus 162 ----------------------~lt~KWfgE~eKlv~AvFslAs--------Kl~P~iIFIDEvds~L~~R~s~dHEa~a 211 (386)
T KOG0737|consen 162 ----------------------NLTSKWFGEAQKLVKAVFSLAS--------KLQPSIIFIDEVDSFLGQRRSTDHEATA 211 (386)
T ss_pred ----------------------ccchhhHHHHHHHHHHHHhhhh--------hcCcceeehhhHHHHHhhcccchHHHHH
Confidence 0011112222333333333333 2378899999997552 111
Q ss_pred --HHHHHHHHHHhcC----CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 025758 147 --QHSLRRTMEKYSA----SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219 (248)
Q Consensus 147 --~~~ll~~le~~~~----~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~ 219 (248)
.+.|..+=+.... .+.++-.||.|.++.+++.+|+ ..++++-|+.++..+||.-++.++++. ++=.+..+++
T Consensus 212 ~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~ 290 (386)
T KOG0737|consen 212 MMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQ 290 (386)
T ss_pred HHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHH
Confidence 1222222222221 2345555899999999999998 789999999999999999999998875 1122555665
Q ss_pred Hccc-cHHHHHHH
Q 025758 220 KSNR-SLRRAILS 231 (248)
Q Consensus 220 ~~~g-~~r~~~~~ 231 (248)
.+.| +.+++.++
T Consensus 291 ~t~GySGSDLkel 303 (386)
T KOG0737|consen 291 MTEGYSGSDLKEL 303 (386)
T ss_pred hcCCCcHHHHHHH
Confidence 5543 33444433
No 173
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.54 E-value=2.5e-13 Score=116.48 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=112.2
Q ss_pred cccHHHHHHHHHHhh-------c---CC--------CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758 16 IVHQDIAQNLKKLVT-------E---QD--------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (248)
Q Consensus 16 ig~~~~~~~l~~~~~-------~---~~--------~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~ 77 (248)
+||+++++.+...+. . .. ..+++|+||+|+|||++|+++|..+..+ |..
T Consensus 80 iGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~p-----------f~~-- 146 (413)
T TIGR00382 80 IGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVP-----------FAI-- 146 (413)
T ss_pred cCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCC-----------eEE--
Confidence 899999998876651 1 11 1359999999999999999999865211 110
Q ss_pred CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-------------
Q 025758 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------- 144 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------------- 144 (248)
+++ ..+.+. +.. .......+..+....+..+ ....+.+++|||+|.+.+
T Consensus 147 ------~da--------~~L~~~--gyv-G~d~e~~L~~~~~~~~~~l-~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg 208 (413)
T TIGR00382 147 ------ADA--------TTLTEA--GYV-GEDVENILLKLLQAADYDV-EKAQKGIIYIDEIDKISRKSENPSITRDVSG 208 (413)
T ss_pred ------ech--------hhcccc--ccc-cccHHHHHHHHHHhCcccH-HhcccceEEecccchhchhhccccccccccc
Confidence 000 001111 110 0112222222222111111 123556999999998876
Q ss_pred -HHHHHHHHHHHHhc-------------CCeeEEEEecCC---------------------------C------------
Q 025758 145 -EAQHSLRRTMEKYS-------------ASCRLILCCNSS---------------------------S------------ 171 (248)
Q Consensus 145 -~~~~~ll~~le~~~-------------~~~~~Il~t~~~---------------------------~------------ 171 (248)
..++.|+++++... .+..+|.|+|-. .
T Consensus 209 ~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~ 288 (413)
T TIGR00382 209 EGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLL 288 (413)
T ss_pred hhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHH
Confidence 57999999996421 122345554430 0
Q ss_pred -----------cccHHHhhhh-heeeecCCCHHHHHHHHHHH----HH-------HcCC--CCCHHHHHHHHHHcc---c
Q 025758 172 -----------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFI----AK-------KEGL--QLPSGFATRLAEKSN---R 223 (248)
Q Consensus 172 -----------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~----~~-------~~~~--~~~~~~~~~l~~~~~---g 223 (248)
.+.|.+..|+ .++.|.+++.+++.+|+... +. ..++ .++++++++|++.+. -
T Consensus 289 ~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~ 368 (413)
T TIGR00382 289 RQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKT 368 (413)
T ss_pred HHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCC
Confidence 1345666777 57899999999999998762 22 1233 588999999998752 1
Q ss_pred cHHHHHHHHHHHh
Q 025758 224 SLRRAILSFETCR 236 (248)
Q Consensus 224 ~~r~~~~~l~~~~ 236 (248)
.+|.+-..++...
T Consensus 369 GAR~Lr~iie~~l 381 (413)
T TIGR00382 369 GARGLRSIVEGLL 381 (413)
T ss_pred CchHHHHHHHHhh
Confidence 2555555555444
No 174
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.54 E-value=1.3e-13 Score=132.86 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=86.6
Q ss_pred CCeeEEEEeCCCCCCHHH-----HHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHH
Q 025758 129 RGFKVLVLNEVDKLSREA-----QHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIV 195 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~~-----~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~ 195 (248)
..|.||+|||+|.++... .+.|+..+... ..++.||.+||.++.+.|++++ |+ ..|.++.|+..+..
T Consensus 1731 ~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~ 1810 (2281)
T CHL00206 1731 MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQR 1810 (2281)
T ss_pred CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHH
Confidence 367899999999887542 34455555432 2345678889999999999998 67 68999999988888
Q ss_pred HHHHHHHHHcCCCCCHH--HHHHHHHHccc-cHHHHHHHHHHHhhhcccccCCCC
Q 025758 196 KVLEFIAKKEGLQLPSG--FATRLAEKSNR-SLRRAILSFETCRVQQLRFTMPSV 247 (248)
Q Consensus 196 ~il~~~~~~~~~~~~~~--~~~~l~~~~~g-~~r~~~~~l~~~~~~~~~~~~~~v 247 (248)
+++.......++.++++ .++.+++.+.| +.+++.+++++++..+-+.....|
T Consensus 1811 kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~I 1865 (2281)
T CHL00206 1811 KHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSII 1865 (2281)
T ss_pred HHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88775555556666544 37888888866 688888888888876655444443
No 175
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.4e-13 Score=120.09 Aligned_cols=195 Identities=19% Similarity=0.255 Sum_probs=126.6
Q ss_pred CCCCcccccccHHHHHHHHHHhh----------c-C-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVT----------E-Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~----------~-~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~ 74 (248)
...+|.++.|.+.+++.+...+. . + +.+ ++||+||||||||.+|+++|.+... .-+.+.+
T Consensus 237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi~v~~---- 309 (494)
T COG0464 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS---RFISVKG---- 309 (494)
T ss_pred CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEEEeeC----
Confidence 34678888888888887776652 1 1 223 4999999999999999999984411 1111100
Q ss_pred eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH----------
Q 025758 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------- 144 (248)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------- 144 (248)
+ .+.....+- ....+++.+.... ...+.||++||+|.+-+
T Consensus 310 -----------------~---~l~sk~vGe-sek~ir~~F~~A~---------~~~p~iiFiDEiDs~~~~r~~~~~~~~ 359 (494)
T COG0464 310 -----------------S---ELLSKWVGE-SEKNIRELFEKAR---------KLAPSIIFIDEIDSLASGRGPSEDGSG 359 (494)
T ss_pred -----------------H---HHhccccch-HHHHHHHHHHHHH---------cCCCcEEEEEchhhhhccCCCCCchHH
Confidence 0 111111111 1122444444333 23677999999997731
Q ss_pred -HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 025758 145 -EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRL 217 (248)
Q Consensus 145 -~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~-~~~~~~~~l 217 (248)
...+.++..++.. ..++.+|.+||.+..+.+++.. |+ ..+.+++|+.++..++++..+...+.. .++-.+..+
T Consensus 360 ~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l 439 (494)
T COG0464 360 RRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEEL 439 (494)
T ss_pred HHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHH
Confidence 3455666666533 3445678889999999999998 88 689999999999999999998866554 335557777
Q ss_pred HHHccc-cHHHHHHHHHHHhhhc
Q 025758 218 AEKSNR-SLRRAILSFETCRVQQ 239 (248)
Q Consensus 218 ~~~~~g-~~r~~~~~l~~~~~~~ 239 (248)
++.+.| +..++..+++.+...+
T Consensus 440 ~~~t~~~sgadi~~i~~ea~~~~ 462 (494)
T COG0464 440 AEITEGYSGADIAALVREAALEA 462 (494)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 765543 4566666666665443
No 176
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.1e-13 Score=106.17 Aligned_cols=165 Identities=19% Similarity=0.333 Sum_probs=108.4
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
.+||....+.+=+=|.++..+.++..++- ..+.+++|+||||+|||.+|++.|.+-.| .-+++.
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c---~firvs 213 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---TFIRVS 213 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce---EEEEec
Confidence 45565554544444567777777665531 12345999999999999999999985422 111221
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------ 143 (248)
|.... . .|- | .....+++.+--.. +..|.+||+||+|.++
T Consensus 214 gselv-----------------q---k~i----g-egsrmvrelfvmar---------ehapsiifmdeidsigs~r~e~ 259 (404)
T KOG0728|consen 214 GSELV-----------------Q---KYI----G-EGSRMVRELFVMAR---------EHAPSIIFMDEIDSIGSSRVES 259 (404)
T ss_pred hHHHH-----------------H---HHh----h-hhHHHHHHHHHHHH---------hcCCceEeeecccccccccccC
Confidence 11000 0 000 0 11123455444333 3356799999999873
Q ss_pred -----HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHH
Q 025758 144 -----REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKK 204 (248)
Q Consensus 144 -----~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~ 204 (248)
.+.+..++++++.. .++.++|+.||..+-+.+++.... ..|.||+|+.+...+||+-.-.+
T Consensus 260 ~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 260 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred CCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh
Confidence 45678888888754 467899999999999999998755 57999999999999998765433
No 177
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.3e-13 Score=122.68 Aligned_cols=179 Identities=19% Similarity=0.246 Sum_probs=113.9
Q ss_pred cCCCCCcccccccHHHHHHHHHHhh----------cCCC--CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 6 KYRPKTLDQVIVHQDIAQNLKKLVT----------EQDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 6 ky~p~~~~~lig~~~~~~~l~~~~~----------~~~~--~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
|-.-.+|+|+=|.++++..+...++ .|-. .+++|+||||||||-+|+++|.++
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------------- 729 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------------- 729 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---------------
Confidence 3445689999999999999888774 1212 239999999999999999999865
Q ss_pred eeccCCcccccceeeec--ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH------
Q 025758 74 KIDAGSRNIDLELTTLS--SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------ 145 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------ 145 (248)
++.+++ .++.+-+ .-| ...+.+++.+.+.. ...|.|||+||+|.+.|+
T Consensus 730 -----------sL~FlSVKGPELLNM---YVG-qSE~NVR~VFerAR---------~A~PCVIFFDELDSlAP~RG~sGD 785 (953)
T KOG0736|consen 730 -----------SLNFLSVKGPELLNM---YVG-QSEENVREVFERAR---------SAAPCVIFFDELDSLAPNRGRSGD 785 (953)
T ss_pred -----------eeeEEeecCHHHHHH---Hhc-chHHHHHHHHHHhh---------ccCCeEEEeccccccCccCCCCCC
Confidence 111111 1111110 001 12234667666555 346789999999998643
Q ss_pred -------HHHHHHHHHHHhcC----CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 146 -------AQHSLRRTMEKYSA----SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 146 -------~~~~ll~~le~~~~----~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
....|+.-++..+. ..-+|-.||+|+-+.++|.. |+ ..+...+.+..+-+..+.+.+. +++.+++
T Consensus 786 SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT-rkFkLde 864 (953)
T KOG0736|consen 786 SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT-RKFKLDE 864 (953)
T ss_pred ccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH-HHccCCC
Confidence 23356666665543 23356668999999999987 45 4566666665555444443333 3555555
Q ss_pred HH-HHHHHHHcccc
Q 025758 212 GF-ATRLAEKSNRS 224 (248)
Q Consensus 212 ~~-~~~l~~~~~g~ 224 (248)
++ +..|++.|..+
T Consensus 865 dVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 865 DVDLVEIAKKCPPN 878 (953)
T ss_pred CcCHHHHHhhCCcC
Confidence 54 78888887654
No 178
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.53 E-value=5.3e-15 Score=122.88 Aligned_cols=159 Identities=15% Similarity=0.300 Sum_probs=101.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc------ccc-eeeecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI------DLE-LTTLSSAN 93 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~ 93 (248)
+++.+...+++|. .+.|.||+||||||++|+||+ |..+++|.+.++|..+....|..+. .|. ++..++.+
T Consensus 18 ~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAG-Le~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 4445555555553 477999999999999999998 8899999999999877644443332 111 12223344
Q ss_pred eeeeCCCCcCcchhH---HHHHH-----HHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758 94 HVELSPSDAGFQDRY---VVQEV-----IKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (248)
Q Consensus 94 ~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~ 152 (248)
++.+.....+....+ .+.+. +..+.+..|..+|+ ..+|+++++||| ..||......+..
T Consensus 95 Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ 174 (338)
T COG3839 95 NIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRS 174 (338)
T ss_pred HhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHH
Confidence 444444433322211 11121 23344456667774 347999999999 8899887777777
Q ss_pred HHHHhcCC--eeEEEEecCCCcccHHHhhhhhe
Q 025758 153 TMEKYSAS--CRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 153 ~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.|.+.... .++|..||+..+.+ ++-+|..+
T Consensus 175 ei~~lh~~l~~T~IYVTHDq~EAm-tladri~V 206 (338)
T COG3839 175 EIKKLHERLGTTTIYVTHDQVEAM-TLADRIVV 206 (338)
T ss_pred HHHHHHHhcCCcEEEEcCCHHHHH-hhCCEEEE
Confidence 77665433 56788888866554 67777643
No 179
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.8e-13 Score=115.17 Aligned_cols=179 Identities=22% Similarity=0.237 Sum_probs=124.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhh----------c--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVT----------E--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~----------~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
+.-++..|+|+.|.+.+++.+...+. . .....++|+||||+|||-+++++|.+....-
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf---------- 214 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF---------- 214 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceE----------
Confidence 45677899999999999999888763 1 1122499999999999999999998752211
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCc---CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDA---GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------ 143 (248)
..+.+++. -....+.....+-.++. ..+|.|++|||+|.+-
T Consensus 215 ----------------------f~iSassLtsK~~Ge~eK~vralf~vAr--------~~qPsvifidEidslls~Rs~~ 264 (428)
T KOG0740|consen 215 ----------------------FNISASSLTSKYVGESEKLVRALFKVAR--------SLQPSVIFIDEIDSLLSKRSDN 264 (428)
T ss_pred ----------------------eeccHHHhhhhccChHHHHHHHHHHHHH--------hcCCeEEEechhHHHHhhcCCc
Confidence 12222211 11122334444444555 3478899999998762
Q ss_pred -----HHHHHHH-HHHHHH---hcCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758 144 -----REAQHSL-RRTMEK---YSASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (248)
Q Consensus 144 -----~~~~~~l-l~~le~---~~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 213 (248)
+.....+ +...-. ......+|.+||.+..+.++++.|+ ..+.++.|+.+....+++..+.+.+..+.+..
T Consensus 265 e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d 344 (428)
T KOG0740|consen 265 EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLD 344 (428)
T ss_pred ccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHH
Confidence 1112222 222211 1234567778899999999999999 47789999999999999999988877788888
Q ss_pred HHHHHHHccc
Q 025758 214 ATRLAEKSNR 223 (248)
Q Consensus 214 ~~~l~~~~~g 223 (248)
++.|++.++|
T Consensus 345 ~~~l~~~Teg 354 (428)
T KOG0740|consen 345 ISLLAKVTEG 354 (428)
T ss_pred HHHHHHHhcC
Confidence 9999987654
No 180
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.52 E-value=3.2e-14 Score=107.20 Aligned_cols=168 Identities=19% Similarity=0.248 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC----Ccccccc--------e
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLE--------L 86 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------~ 86 (248)
..+++.++..++.|. .+.++||+|+||||+.++|.. ...++.|++.+++.++..-.. .-++.+- +
T Consensus 15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~-~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYG-EERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHh-hhcCCCceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 446666666666654 366999999999999999998 568999999999976541111 1111000 1
Q ss_pred eeecccceeeeCCCCcCcchhH---HHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHH
Q 025758 87 TTLSSANHVELSPSDAGFQDRY---VVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~ 145 (248)
.-.++.+++.+...-.+..+.. .+.+.++. -+...|..+|+ .++|.+++-||| ..+||+
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 1112333444333333333222 22233222 23345666663 458999999999 799999
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCC
Q 025758 146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP 189 (248)
Q Consensus 146 ~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~ 189 (248)
....++.++++....++.|+++++...+..+.+.|+..+.-...
T Consensus 172 ~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl 215 (223)
T COG2884 172 LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215 (223)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence 99999999999987777777777778888899888876655443
No 181
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.52 E-value=1e-14 Score=121.81 Aligned_cols=147 Identities=17% Similarity=0.248 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....... ...+++.+.
T Consensus 8 ~l~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~-----------~~~i~~~~q 73 (302)
T TIGR01188 8 AVDGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTT-LLRPTSGTARVAGYDVVREPRKV-----------RRSIGIVPQ 73 (302)
T ss_pred EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccCHHHH-----------HhhcEEecC
Confidence 3444555555553 356999999999999999998 67889999999886543110000 011222222
Q ss_pred CcCcchhHH----------------------HHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 101 DAGFQDRYV----------------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 101 ~~~~~~~~~----------------------~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
........+ +.+.++.+ .......+|+ ..+|+++++||| .
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 222111111 12222221 1111223332 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758 141 KLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
.||+.....+.+++.+.... ..+|++||+. .....+++|+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~ 195 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIA 195 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEE
Confidence 99999999999999887544 4566666654 44456666663
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.52 E-value=3.3e-13 Score=100.07 Aligned_cols=137 Identities=31% Similarity=0.426 Sum_probs=87.9
Q ss_pred cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
+|++..+..+..++......+++++||+|+|||++++.++..+....... +
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v-----------------------------~ 51 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPF-----------------------------L 51 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe-----------------------------E
Confidence 36777888888888765556799999999999999999999763111111 1
Q ss_pred eeCCCCcCcchhHHHHHHHH----HHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------CCeeEEE
Q 025758 96 ELSPSDAGFQDRYVVQEVIK----EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ASCRLIL 165 (248)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------~~~~~Il 165 (248)
.+.......... ...... ..... ......+.++++||++.+.......++..++... ....+|+
T Consensus 52 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~ 125 (151)
T cd00009 52 YLNASDLLEGLV--VAELFGHFLVRLLFE----LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIG 125 (151)
T ss_pred EEehhhhhhhhH--HHHHhhhhhHhHHHH----hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEE
Confidence 111111000000 000000 00000 0013367899999999988778888888888763 4567888
Q ss_pred EecCCC--cccHHHhhhh-heeeec
Q 025758 166 CCNSSS--KVTEAIRSRC-LNIRIN 187 (248)
Q Consensus 166 ~t~~~~--~~~~~l~sR~-~~i~~~ 187 (248)
+++... .+.+.+.+|+ ..+.++
T Consensus 126 ~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 126 ATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ecCccccCCcChhHHhhhccEeecC
Confidence 888776 7888999999 667665
No 183
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8.7e-13 Score=104.26 Aligned_cols=174 Identities=20% Similarity=0.331 Sum_probs=113.2
Q ss_pred CCcccccccHHHHHHHHHHhh------------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 10 KTLDQVIVHQDIAQNLKKLVT------------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~------------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
.+.+|+=|.++.++.|...+- +=++| +++++||||+|||.+||++|.+-. +...++.|
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~---aTFLKLAg------ 238 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN---ATFLKLAG------ 238 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc---chHHHhcc------
Confidence 456777788887777766541 11223 499999999999999999997531 11111111
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-----------HH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE 145 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~ 145 (248)
++.+.+... .+..-+++.+.. ++ +..|.||||||+|.++ .+
T Consensus 239 ---------------PQLVQMfIG----dGAkLVRDAFaL-AK--------EkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 239 ---------------PQLVQMFIG----DGAKLVRDAFAL-AK--------EKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred ---------------hHHHhhhhc----chHHHHHHHHHH-hh--------ccCCeEEEEechhhhccccccccccccHH
Confidence 111111111 112224444442 22 4467899999999873 56
Q ss_pred HHHHHHHHHHHh---c--CCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHH
Q 025758 146 AQHSLRRTMEKY---S--ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-ATR 216 (248)
Q Consensus 146 ~~~~ll~~le~~---~--~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~~~ 216 (248)
.+..++++++.. + ...++|..||..+-+.|++.... +.|.||-|+.+....|++-+. +++++++++ ++.
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHs--RKMnv~~DvNfeE 368 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHS--RKMNVSDDVNFEE 368 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhh--hhcCCCCCCCHHH
Confidence 788888888764 2 34689999999999999987655 689999999999999988544 445555544 666
Q ss_pred HHHHcc
Q 025758 217 LAEKSN 222 (248)
Q Consensus 217 l~~~~~ 222 (248)
+++.++
T Consensus 369 LaRsTd 374 (424)
T KOG0652|consen 369 LARSTD 374 (424)
T ss_pred Hhhccc
Confidence 665543
No 184
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.50 E-value=4.8e-12 Score=98.80 Aligned_cols=194 Identities=18% Similarity=0.238 Sum_probs=133.0
Q ss_pred cccCCCCCcccccccHHHHHHHHH----HhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKK----LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~----~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
+..|.|..+.+|+|-+..++.|-+ .++.-...|+||+|..|+|||++++++-.++......-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL-------------- 116 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRL-------------- 116 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeE--------------
Confidence 456788999999997776665544 44333444599999999999999999998774433221
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHH-HH---
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT-ME--- 155 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~-le--- 155 (248)
+++..++. .+.-.+++.+.. ...+-|++.|+...=..+.....+|. +|
T Consensus 117 ---------------VEV~k~dl-----~~Lp~l~~~Lr~--------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v 168 (287)
T COG2607 117 ---------------VEVDKEDL-----ATLPDLVELLRA--------RPEKFILFCDDLSFEEGDDAYKALKSALEGGV 168 (287)
T ss_pred ---------------EEEcHHHH-----hhHHHHHHHHhc--------CCceEEEEecCCCCCCCchHHHHHHHHhcCCc
Confidence 33333222 123334444443 44677999999865444444554544 33
Q ss_pred -HhcCCeeEEEEecCCCcccH----------------------HHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 156 -KYSASCRLILCCNSSSKVTE----------------------AIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 156 -~~~~~~~~Il~t~~~~~~~~----------------------~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
..+.|+.|.-+||....+.+ .+.+|+ ..+.|.+++.++...++...+++.++.+++
T Consensus 169 e~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~ 248 (287)
T COG2607 169 EGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISD 248 (287)
T ss_pred ccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 34667777777776532222 344666 689999999999999999999999999987
Q ss_pred HHHHHHH-----HHccccHHHHHHHHHHHhhhc
Q 025758 212 GFATRLA-----EKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 212 ~~~~~l~-----~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+.++.=+ .+.+++.|.|-..++.+....
T Consensus 249 e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~g~~ 281 (287)
T COG2607 249 EELHAEALQWATTRGGRSGRVAWQFIRDLAGRL 281 (287)
T ss_pred HHHHHHHHHHHHhcCCCccHhHHHHHHHHHhhh
Confidence 6655443 556788999999888887543
No 185
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.3e-14 Score=115.55 Aligned_cols=165 Identities=17% Similarity=0.278 Sum_probs=103.4
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--Ccc-------cccc-e
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--SRN-------IDLE-L 86 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~-~ 86 (248)
|.-.+...+.-.++.|+.-. |.||+|+||||+.|+||+ |..++.|.|.+++..+..... .+. ..|. +
T Consensus 13 ~~~~a~~di~l~i~~Ge~va--LlGpSGaGKsTlLRiIAG-Le~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVA--LLGPSGAGKSTLLRIIAG-LETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEE--EECCCCCcHHHHHHHHhC-cCCCCCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 33334445555556665555 999999999999999998 899999999999985431111 111 1111 1
Q ss_pred eeecccceeeeCCCCc--Cc---chhHHHHHHH-----HHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 87 TTLSSANHVELSPSDA--GF---QDRYVVQEVI-----KEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~-----~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
..+++.+++.+...-. .. .....+.+.+ ..++..+|..+|+ .-+|+|++|||| ..+|
T Consensus 90 ~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALD 169 (345)
T COG1118 90 PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 169 (345)
T ss_pred ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhh
Confidence 2223445544433211 11 1122233332 3456667778875 348999999999 7888
Q ss_pred HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhheee
Q 025758 144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
......|.+-+.+... +...+++|++..+.. .+.+|+.++.
T Consensus 170 a~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~-~ladrvvvl~ 212 (345)
T COG1118 170 AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL-ELADRVVVLN 212 (345)
T ss_pred HHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH-hhcceEEEec
Confidence 8777776666665543 367889999877665 6777775443
No 186
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.49 E-value=2.1e-13 Score=106.70 Aligned_cols=147 Identities=18% Similarity=0.205 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc--CCCcccceecccceeeccCCcccccceeeecccceeee
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (248)
.+.+.+...+.+|. .+.|.||||+||||+++++++ +. .+..|.+.+++.++... .....+.+
T Consensus 23 ~~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~G-l~~~~~~~G~i~~~g~~~~~~-------------~~~~~i~~ 86 (194)
T cd03213 23 QLLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAG-RRTGLGVSGEVLINGRPLDKR-------------SFRKIIGY 86 (194)
T ss_pred cceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCCceEEEECCEeCchH-------------hhhheEEE
Confidence 34555555555543 467999999999999999998 66 78889998888654310 01112444
Q ss_pred CCCCcCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeE
Q 025758 98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRL 163 (248)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~ 163 (248)
.+.........++.+.+....... .+|+ ..+|+++++||| ..||......+++.+++... ...+
T Consensus 87 ~~q~~~~~~~~t~~~~i~~~~~~~--~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 164 (194)
T cd03213 87 VPQDDILHPTLTVRETLMFAAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164 (194)
T ss_pred ccCcccCCCCCcHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 444433333333444333211110 2221 347899999999 89999999999999988754 4577
Q ss_pred EEEecCCCcccHHHhhhhhee
Q 025758 164 ILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 164 Il~t~~~~~~~~~l~sR~~~i 184 (248)
|++|++.......+.+|+.++
T Consensus 165 ii~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 165 ICSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred EEEecCchHHHHHhcCEEEEE
Confidence 888888765555677776544
No 187
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=1.2e-13 Score=117.55 Aligned_cols=157 Identities=13% Similarity=0.262 Sum_probs=94.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 92 (248)
+++.+...+..|. .+.|.||||+||||++++||+ +..+.+|.+.++|..+....+... ...+ ...++.
T Consensus 19 ~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~~r-~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 19 VIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVVNELEPADR-DIAMVFQNYALYPHMSVR 94 (356)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHC-CEEEEeCCccccCCCCHH
Confidence 3444555555553 366999999999999999999 778999999999976542211111 0110 011112
Q ss_pred ceeeeCCCCcCcch---hHHHHHHHH-----HHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 93 NHVELSPSDAGFQD---RYVVQEVIK-----EMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
+++.+.....+... ...+.+.++ .+....+..+|+ ..+|+++++||| ..||...+..+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 22222111111111 111222222 223334445553 458999999999 899999999999
Q ss_pred HHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
+.+.+... +..+|++||+...+ ..+.+|+.
T Consensus 175 ~~l~~l~~~~g~tii~vTHd~~ea-~~l~D~i~ 206 (356)
T PRK11650 175 LEIQRLHRRLKTTSLYVTHDQVEA-MTLADRVV 206 (356)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 99987654 46788888876554 46667764
No 188
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.47 E-value=2.9e-12 Score=116.77 Aligned_cols=222 Identities=15% Similarity=0.121 Sum_probs=122.5
Q ss_pred cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee----eccCCccccccee
Q 025758 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK----IDAGSRNIDLELT 87 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 87 (248)
|.+++||+.++..|...+-+++..+++|.|++|+||||+|++++..+ .+-. . ..+..|. ..|+.|..|....
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~l-p~~~-~--~~~~~~~c~p~~~~~~~~~~~~~~ 78 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALL-PPID-V--VAGCPFSCDPDDPEEWCEECRRKY 78 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhC-CCce-e--ccCCcCCCCCCCccccChhhhhcc
Confidence 67899999999999888877777779999999999999999999844 2100 0 0000110 0011121111111
Q ss_pred eec---ccceeeeCCCCc--CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----
Q 025758 88 TLS---SANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---- 158 (248)
Q Consensus 88 ~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---- 158 (248)
... ...++.+..... .......+...+..-......++-...+..+++|||++.|++..++.|++.+++..
T Consensus 79 ~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 79 RPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred cccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 111 111122211110 01111111211110000000111123456799999999999999999999998642
Q ss_pred ---------CCeeEEEEecCC-CcccHHHhhhh-heeeecCCC-HHHHHHHHHHHHH-----------------------
Q 025758 159 ---------ASCRLILCCNSS-SKVTEAIRSRC-LNIRINSPT-EEQIVKVLEFIAK----------------------- 203 (248)
Q Consensus 159 ---------~~~~~Il~t~~~-~~~~~~l~sR~-~~i~~~~~~-~~~~~~il~~~~~----------------------- 203 (248)
....+|.++|.. ..+.++|.+|+ ..+.++++. .++..+++.....
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i 238 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI 238 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence 122344444422 25778999999 456666554 3443444432111
Q ss_pred ------HcCCCCCHHHHHHHHHHcc---c-cHHHHHHHHHHHhh
Q 025758 204 ------KEGLQLPSGFATRLAEKSN---R-SLRRAILSFETCRV 237 (248)
Q Consensus 204 ------~~~~~~~~~~~~~l~~~~~---g-~~r~~~~~l~~~~~ 237 (248)
...+.++++++.++++.+. - ++|..+.++..+..
T Consensus 239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA 282 (633)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 0246788888888886652 1 46777776665543
No 189
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.47 E-value=4.8e-12 Score=106.64 Aligned_cols=193 Identities=18% Similarity=0.159 Sum_probs=120.3
Q ss_pred ccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccc
Q 025758 15 VIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (248)
Q Consensus 15 lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (248)
++|.....+.+...+.. ....+|+|+|++||||+++|++|-..-.......+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc---------------------- 58 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNC---------------------- 58 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeC----------------------
Confidence 45666555555444432 223349999999999999999998633222222222222
Q ss_pred ceeeeCCCCcCcchhHHHH-HHHHHHH------hcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-------
Q 025758 93 NHVELSPSDAGFQDRYVVQ-EVIKEMA------KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------- 158 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------- 158 (248)
.... + .... +.+.... .....++....+...++|||++.|+...|..|++++++..
T Consensus 59 -------~~~~--~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~ 128 (329)
T TIGR02974 59 -------AALS--E-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGS 128 (329)
T ss_pred -------CCCC--h-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCC
Confidence 1100 0 0000 0000000 0000111123356789999999999999999999998642
Q ss_pred ----CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCC--HHHHHHHHHHHHHH----cC----CCCCHHHHH
Q 025758 159 ----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPT--EEQIVKVLEFIAKK----EG----LQLPSGFAT 215 (248)
Q Consensus 159 ----~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~--~~~~~~il~~~~~~----~~----~~~~~~~~~ 215 (248)
.+.++|++|+... .+.++|..|+ ..|.+||+. .+++..++...+.+ .+ ..++++++.
T Consensus 129 ~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~ 208 (329)
T TIGR02974 129 QTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQARE 208 (329)
T ss_pred ceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHH
Confidence 2357888877542 3557788887 568888887 45666555554332 22 358999999
Q ss_pred HHHHHc-cccHHHHHHHHHHHhhhc
Q 025758 216 RLAEKS-NRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 216 ~l~~~~-~g~~r~~~~~l~~~~~~~ 239 (248)
.|.... .||+|++.|.++.++...
T Consensus 209 ~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhC
Confidence 999886 999999999999988754
No 190
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=2.5e-13 Score=104.41 Aligned_cols=142 Identities=20% Similarity=0.330 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (248)
.+.+...+.+|. .+.+.||||+||||+++++++ +..+..|.+.+++........ .....+.+.+..
T Consensus 16 l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~~-----------~~~~~i~~~~q~ 81 (173)
T cd03230 16 LDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILG-LLKPDSGEIKVLGKDIKKEPE-----------EVKRRIGYLPEE 81 (173)
T ss_pred eeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcccchH-----------hhhccEEEEecC
Confidence 334444444442 377999999999999999998 667888999888865431100 001123333333
Q ss_pred cCcchhHHHHHHHH---------HHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCC
Q 025758 102 AGFQDRYVVQEVIK---------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSS 170 (248)
Q Consensus 102 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~ 170 (248)
.......++.+.+. .++... ..+|+++++||| ..+|......+.+.+++.... ..+|++|++.
T Consensus 82 ~~~~~~~tv~~~~~LS~G~~qrv~laral------~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 82 PSLYENLTVRENLKLSGGMKQRLALAQAL------LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred CccccCCcHHHHhhcCHHHHHHHHHHHHH------HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 22222212222211 000000 237889999999 899999999999999987544 5567776665
Q ss_pred CcccHHHhhhhhee
Q 025758 171 SKVTEAIRSRCLNI 184 (248)
Q Consensus 171 ~~~~~~l~sR~~~i 184 (248)
. ....+.+|+..+
T Consensus 156 ~-~~~~~~d~i~~l 168 (173)
T cd03230 156 E-EAERLCDRVAIL 168 (173)
T ss_pred H-HHHHhCCEEEEE
Confidence 4 444666666544
No 191
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.47 E-value=4.8e-14 Score=117.82 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeC
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (248)
..+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.+......... ..+++.
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~-----------~~i~~v 82 (303)
T TIGR01288 17 KVVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLG-MISPDRGKITVLGEPVPSRARLAR-----------VAIGVV 82 (303)
T ss_pred eEEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECcccHHHHh-----------hcEEEE
Confidence 335556666666553 366999999999999999998 668889999998865431100000 011111
Q ss_pred CCCcCcchhH----------------------HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC
Q 025758 99 PSDAGFQDRY----------------------VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV 139 (248)
Q Consensus 99 ~~~~~~~~~~----------------------~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~ 139 (248)
+......... .+.+.++.+ .......+|+ ..+|+++++|||
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1111111111 111122111 1111223332 458999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758 140 -DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 140 -d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
..||+.....+++.+.+.... ..+|++||+.. ....+.+|+.
T Consensus 163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~ 206 (303)
T TIGR01288 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLC 206 (303)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 899999999999999887543 45666666654 4456667663
No 192
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.46 E-value=2.5e-13 Score=113.39 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+++.+...+.+|.. +.|.||||+||||+++++++ +..+.+|.+.++|.++...... ....+++.+.
T Consensus 17 ~l~~is~~i~~Gei--~~l~G~NGaGKTTLl~~l~G-l~~~~~G~i~i~g~~~~~~~~~-----------~~~~ig~~~q 82 (301)
T TIGR03522 17 ALDEVSFEAQKGRI--VGFLGPNGAGKSTTMKIITG-YLPPDSGSVQVCGEDVLQNPKE-----------VQRNIGYLPE 82 (301)
T ss_pred EEEEeEEEEeCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccChHH-----------HHhceEEecC
Confidence 34444444544433 66999999999999999998 7789999999988755311100 0111333333
Q ss_pred CcCcchhHHHHHHH----------------------HHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 101 DAGFQDRYVVQEVI----------------------KEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 101 ~~~~~~~~~~~~~~----------------------~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.....+..++.+.+ +.+ .......+|+ ..+|+++++||| .
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 22222222222222 111 0111112221 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.||+..+..+++++.+...+..+|++||+. ...+.+++|+.+
T Consensus 163 gLD~~~~~~l~~~l~~~~~~~tiii~sH~l-~~~~~~~d~i~~ 204 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGKDKTIILSTHIM-QEVEAICDRVII 204 (301)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEcCCH-HHHHHhCCEEEE
Confidence 999999999999999886555555555554 455567777643
No 193
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=3.5e-13 Score=106.13 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=93.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC---CCcccceecccceeeccCCcccccceeeecccceeee
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG---PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (248)
+.+.+...+.+|. .+.+.||||+||||+++++++ +.. +.+|.+.+++.+....... ....+.+
T Consensus 22 il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~~~~G~i~i~g~~~~~~~~~-----------~~~~i~~ 87 (202)
T cd03233 22 ILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALAN-RTEGNVSVEGDIHYNGIPYKEFAEK-----------YPGEIIY 87 (202)
T ss_pred eeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcc-cCCCCCCcceEEEECCEECccchhh-----------hcceEEE
Confidence 3344444444443 477999999999999999999 555 6789998888654311100 0112344
Q ss_pred CCCCcCcchhHHHHHHHHHHH----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-
Q 025758 98 SPSDAGFQDRYVVQEVIKEMA----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA- 159 (248)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~- 159 (248)
.+.........++.+.+.... ......++. ..+|+++++||| ..+|+..+..+.+++++...
T Consensus 88 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 167 (202)
T cd03233 88 VSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167 (202)
T ss_pred EecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 343333333334444443221 122223332 347899999999 89999999999999998754
Q ss_pred -CeeEEEEecCCCcccHHHhhhhhee
Q 025758 160 -SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 160 -~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+|+++++.......+.+|+..+
T Consensus 168 ~~~t~ii~~~h~~~~~~~~~d~i~~l 193 (202)
T cd03233 168 LKTTTFVSLYQASDEIYDLFDKVLVL 193 (202)
T ss_pred CCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence 3456777777655555676776443
No 194
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.3e-13 Score=106.26 Aligned_cols=183 Identities=17% Similarity=0.283 Sum_probs=119.6
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhc-----------C--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----------~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~ 67 (248)
|+-+|.-...|..|+=|.++.++.++..++- | .+.+++++||||+|||.+||++|.. .++-.++
T Consensus 165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr---tdacfir 241 (435)
T KOG0729|consen 165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR---TDACFIR 241 (435)
T ss_pred EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc---cCceEEe
Confidence 4555666667889988999999999887641 1 2234999999999999999999963 2322222
Q ss_pred ecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----
Q 025758 68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---- 143 (248)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---- 143 (248)
+-|.... -.|.. .....+++++.- +. ...-.+|++||+|.++
T Consensus 242 vigselv--------------------qkyvg-----egarmvrelf~m-ar--------tkkaciiffdeidaiggarf 287 (435)
T KOG0729|consen 242 VIGSELV--------------------QKYVG-----EGARMVRELFEM-AR--------TKKACIIFFDEIDAIGGARF 287 (435)
T ss_pred ehhHHHH--------------------HHHhh-----hhHHHHHHHHHH-hc--------ccceEEEEeeccccccCccc
Confidence 2111100 00111 122235554442 22 2345689999998773
Q ss_pred -------HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCC
Q 025758 144 -------REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ 208 (248)
Q Consensus 144 -------~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~ 208 (248)
.+.+..+++++... ..|.++++.||.+..+.++|..-. ..+.|..|+-+....|+.-+.. .++
T Consensus 288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihak--sms 365 (435)
T KOG0729|consen 288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK--SMS 365 (435)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecc--ccc
Confidence 45678888888753 567899999999999999998755 5799999998888877764332 333
Q ss_pred CCHHH-HHHHHHHcc
Q 025758 209 LPSGF-ATRLAEKSN 222 (248)
Q Consensus 209 ~~~~~-~~~l~~~~~ 222 (248)
++.+. ++.|+..|.
T Consensus 366 verdir~ellarlcp 380 (435)
T KOG0729|consen 366 VERDIRFELLARLCP 380 (435)
T ss_pred cccchhHHHHHhhCC
Confidence 33333 445555543
No 195
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=9.7e-14 Score=107.93 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=108.1
Q ss_pred ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
-+|.-++++.+...++.|.+ +.+.|+||+||||++++|++ +..+.+|.+..+|.++....+... ....
T Consensus 12 ~YG~~~~L~gvsl~v~~Gei--v~llG~NGaGKTTlLkti~G-l~~~~~G~I~~~G~dit~~p~~~r---------~r~G 79 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEI--VALLGRNGAGKTTLLKTIMG-LVRPRSGRIIFDGEDITGLPPHER---------ARLG 79 (237)
T ss_pred cccceeEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeeEEECCeecCCCCHHHH---------HhCC
Confidence 35666777777777777654 55999999999999999999 667889999999987763333221 1233
Q ss_pred eeeCCCCcCcchhHHHHHHHHHHHh---------------------------cCCCcCCC------------CCCeeEEE
Q 025758 95 VELSPSDAGFQDRYVVQEVIKEMAK---------------------------NRPIDTKG------------KRGFKVLV 135 (248)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~------------~~~~~vii 135 (248)
+.+.|+.....+..++.|.+.--.. .....+|+ ..+|++++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL 159 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence 6677777766666666666442111 11113332 45899999
Q ss_pred EeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758 136 LNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 136 iDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
|||| ..+.|.....+++.|.+..+. +..|+.....-...-.+.+|..+
T Consensus 160 LDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yv 209 (237)
T COG0410 160 LDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYV 209 (237)
T ss_pred ecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEE
Confidence 9999 799999999999999988754 33444444444445567788743
No 196
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.46 E-value=3.3e-13 Score=104.56 Aligned_cols=144 Identities=18% Similarity=0.229 Sum_probs=87.5
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (248)
+.+...+.+|. .+.+.||||+||||+++++++ +..+.+|.+.++|.++....+.. .....+.+.+.+.
T Consensus 17 ~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~---------~~~~~i~~~~q~~ 84 (182)
T cd03215 17 RDVSFEVRAGE--IVGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPRD---------AIRAGIAYVPEDR 84 (182)
T ss_pred cceEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCccCHHH---------HHhCCeEEecCCc
Confidence 33333444442 477999999999999999998 66888999999886543111000 0011233433331
Q ss_pred ---CcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEE
Q 025758 103 ---GFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLIL 165 (248)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il 165 (248)
......++.+.+..... +|. ..+|+++++||| ..+|+.....+.+++.+... +..+|+
T Consensus 85 ~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 159 (182)
T cd03215 85 KREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159 (182)
T ss_pred ccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 12222233333322110 110 347899999999 89999999999999988744 356666
Q ss_pred EecCCCcccHHHhhhhhee
Q 025758 166 CCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 166 ~t~~~~~~~~~l~sR~~~i 184 (248)
+||+.. ....+.+|+..+
T Consensus 160 ~sh~~~-~~~~~~d~v~~l 177 (182)
T cd03215 160 ISSELD-ELLGLCDRILVM 177 (182)
T ss_pred EeCCHH-HHHHhCCEEEEe
Confidence 666643 444566665443
No 197
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=1.5e-13 Score=106.15 Aligned_cols=142 Identities=13% Similarity=0.219 Sum_probs=84.4
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (248)
.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++.+.....+... .....+.+.+..
T Consensus 16 l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~--------~~~~~i~~~~q~ 84 (178)
T cd03229 16 LNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAG-LEEPDSGSILIDGEDLTDLEDELP--------PLRRRIGMVFQD 84 (178)
T ss_pred EeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccchhHH--------HHhhcEEEEecC
Confidence 334444444443 366999999999999999998 668888999988865431110000 001112222222
Q ss_pred cC--------------cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC--eeEE
Q 025758 102 AG--------------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS--CRLI 164 (248)
Q Consensus 102 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~--~~~I 164 (248)
.. .+.++..+-.+.... ..+|+++++||| ..+|+..+..+.+++.+.... ..+|
T Consensus 85 ~~~~~~~t~~~~l~~~lS~G~~qr~~la~al---------~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 155 (178)
T cd03229 85 FALFPHLTVLENIALGLSGGQQQRVALARAL---------AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVV 155 (178)
T ss_pred CccCCCCCHHHheeecCCHHHHHHHHHHHHH---------HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 21 111111111111111 237789999999 899999999999999887553 5677
Q ss_pred EEecCCCcccHHHhhhhhee
Q 025758 165 LCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 165 l~t~~~~~~~~~l~sR~~~i 184 (248)
++||+.+. .+.+.+++..+
T Consensus 156 i~sH~~~~-~~~~~d~i~~l 174 (178)
T cd03229 156 LVTHDLDE-AARLADRVVVL 174 (178)
T ss_pred EEeCCHHH-HHHhcCEEEEE
Confidence 77776543 34555655433
No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.45 E-value=5.9e-12 Score=109.05 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=110.1
Q ss_pred cccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccc
Q 025758 14 QVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN 93 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (248)
.++|++++++.+...+..+ .|++|.||||+|||++|++++..+.... ... + ..
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~--~F~--~-------------~~-------- 73 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNAR--AFE--Y-------------LM-------- 73 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccC--cce--e-------------ee--------
Confidence 3578888888888777554 4799999999999999999998542211 000 0 00
Q ss_pred eeee-CCCCcCcchhHHHHHHH--HHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------CCe
Q 025758 94 HVEL-SPSDAGFQDRYVVQEVI--KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------ASC 161 (248)
Q Consensus 94 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------~~~ 161 (248)
..+ .+++ ..+...+...- ..+....+.. -....++++||+..+++..++.|+..+++.. -..
T Consensus 74 -~~fttp~D--LfG~l~i~~~~~~g~f~r~~~G~---L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~ 147 (498)
T PRK13531 74 -TRFSTPEE--VFGPLSIQALKDEGRYQRLTSGY---LPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPM 147 (498)
T ss_pred -eeecCcHH--hcCcHHHhhhhhcCchhhhcCCc---cccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCC
Confidence 011 0100 00000001000 0000000000 1123499999999999999999999997642 112
Q ss_pred eEEEEecC-CC---cccHHHhhhh-heeeecCCC-HHHHHHHHHHHHH-----------------------HcCCCCCHH
Q 025758 162 RLILCCNS-SS---KVTEAIRSRC-LNIRINSPT-EEQIVKVLEFIAK-----------------------KEGLQLPSG 212 (248)
Q Consensus 162 ~~Il~t~~-~~---~~~~~l~sR~-~~i~~~~~~-~~~~~~il~~~~~-----------------------~~~~~~~~~ 212 (248)
+||+++++ .+ ...+++.+|+ ..+.+++++ .++..++|..... -..+.+++.
T Consensus 148 rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~ 227 (498)
T PRK13531 148 RLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDH 227 (498)
T ss_pred cEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHH
Confidence 35555443 33 2456899999 468888887 4555777754211 024556777
Q ss_pred HHHHHHHHcc----------ccHHHHHHHHHHHhhhc
Q 025758 213 FATRLAEKSN----------RSLRRAILSFETCRVQQ 239 (248)
Q Consensus 213 ~~~~l~~~~~----------g~~r~~~~~l~~~~~~~ 239 (248)
++++|.+... -+.|..+.++..+...+
T Consensus 228 v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A 264 (498)
T PRK13531 228 VFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASA 264 (498)
T ss_pred HHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 7777764421 24566666555554433
No 199
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=9.9e-14 Score=110.20 Aligned_cols=159 Identities=19% Similarity=0.303 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------eccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.++....... ....+.. .+..
T Consensus 15 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~-~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 15 ALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAG-LERPDSGEILIDGRDVTGVPPER-RNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcCcCchhh-ccEEEEcCchhhccCCcHH
Confidence 4455555555553 366999999999999999998 66888999998886543111100 0000000 0001
Q ss_pred ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~ 170 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 11111000000000 01122222221 1122223442 458999999999 899999999999
Q ss_pred HHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+++.+... +..+|++||+.. ....+.+|+..+
T Consensus 171 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 204 (213)
T cd03259 171 EELKELQRELGITTIYVTHDQE-EALALADRIAVM 204 (213)
T ss_pred HHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 99988643 456777777654 344666776544
No 200
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=3.6e-13 Score=103.28 Aligned_cols=142 Identities=18% Similarity=0.321 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+.+.+...+.+|. .+.+.||||+||||+++++++ +..+.+|.+.+++.......... ....+.+.+.
T Consensus 17 ~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~----------~~~~i~~~~~ 83 (171)
T cd03228 17 VLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLR-LYDPTSGEILIDGVDLRDLDLES----------LRKNIAYVPQ 83 (171)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhhhcCHHH----------HHhhEEEEcC
Confidence 3444444454443 367999999999999999999 66788898888886443110000 0011222222
Q ss_pred CcCcchhHHHHHHH--------HHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 101 DAGFQDRYVVQEVI--------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 101 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
...... .++.+.+ -.++..- ..+|+++++||| ..+|+.....+.+++.+...+..+|++||+..
T Consensus 84 ~~~~~~-~t~~e~lLS~G~~~rl~la~al------~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 156 (171)
T cd03228 84 DPFLFS-GTIRENILSGGQRQRIAIARAL------LRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred Cchhcc-chHHHHhhCHHHHHHHHHHHHH------hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 211111 1111110 0011100 237789999999 79999999999999988765566777777766
Q ss_pred cccHHHhhhhhee
Q 025758 172 KVTEAIRSRCLNI 184 (248)
Q Consensus 172 ~~~~~l~sR~~~i 184 (248)
.+ +. .+|+..+
T Consensus 157 ~~-~~-~d~~~~l 167 (171)
T cd03228 157 TI-RD-ADRIIVL 167 (171)
T ss_pred HH-Hh-CCEEEEE
Confidence 55 34 5555443
No 201
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.45 E-value=2.8e-13 Score=104.57 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=84.7
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (248)
.+.+...+.+|. .+.+.||||+||||+++++++ +..+.+|.+.+++...... ... ....+.+.+..
T Consensus 18 l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~-~~~----------~~~~i~~~~q~ 83 (178)
T cd03247 18 LKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTG-DLKPQQGEITLDGVPVSDL-EKA----------LSSLISVLNQR 83 (178)
T ss_pred eEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCEEHHHH-HHH----------HHhhEEEEccC
Confidence 334444444443 467999999999999999998 6678889998888643210 000 00112222221
Q ss_pred cCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758 102 AGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCN 168 (248)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~ 168 (248)
..... .++.+.+ ...+++ ..+|+++++||| ..+|......+.+.+.+...+..+|++|+
T Consensus 84 ~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 155 (178)
T cd03247 84 PYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155 (178)
T ss_pred Ceeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 11111 1111111 001110 237889999999 89999999999999988765667888888
Q ss_pred CCCcccHHHhhhhhee
Q 025758 169 SSSKVTEAIRSRCLNI 184 (248)
Q Consensus 169 ~~~~~~~~l~sR~~~i 184 (248)
+...+ + ..+|+..+
T Consensus 156 ~~~~~-~-~~d~~~~l 169 (178)
T cd03247 156 HLTGI-E-HMDKILFL 169 (178)
T ss_pred CHHHH-H-hCCEEEEE
Confidence 87654 3 35665443
No 202
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=4.1e-13 Score=106.41 Aligned_cols=146 Identities=20% Similarity=0.294 Sum_probs=81.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee------eecccceeeeCCCCcCcch---
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT------TLSSANHVELSPSDAGFQD--- 106 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--- 106 (248)
.+.|.||||+||||+++++++ +..+.+|.+.++|.++..... ....+-.+ ..+..+++.+.....+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~-~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILG-IILPDSGEVLFDGKPLDIAAR-NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA 105 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCCchhHHHH-ccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHH
Confidence 367999999999999999998 668889999988865421000 00000000 0011111111000000000
Q ss_pred hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEe
Q 025758 107 RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCC 167 (248)
Q Consensus 107 ~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t 167 (248)
...+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+.....+.+.+++... +..+|++|
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~s 185 (210)
T cd03269 106 RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILST 185 (210)
T ss_pred HHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 01122222221 1112223332 448899999999 79999999999999988754 34566666
Q ss_pred cCCCcccHHHhhhhhee
Q 025758 168 NSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 168 ~~~~~~~~~l~sR~~~i 184 (248)
++.. ....+.+|+..+
T Consensus 186 H~~~-~~~~~~d~i~~l 201 (210)
T cd03269 186 HQME-LVEELCDRVLLL 201 (210)
T ss_pred CCHH-HHHHhhhEEEEE
Confidence 6644 444566666444
No 203
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.45 E-value=3.7e-14 Score=110.71 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=105.0
Q ss_pred cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----------ccc-
Q 025758 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----------NID- 83 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~- 83 (248)
+|.+.+++.+...+..|++.. +.||+|+||||+.|.+.+ +..|+.|++.++|.++..-+... ++.
T Consensus 18 fG~~~Ild~v~l~V~~Gei~~--iiGgSGsGKStlLr~I~G-ll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 18 FGDRVILDGVDLDVPRGEILA--ILGGSGSGKSTLLRLILG-LLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred cCCEEEecCceeeecCCcEEE--EECCCCcCHHHHHHHHhc-cCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 567777777877777776655 999999999999999998 78999999999997654111111 000
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHH----HHH------HHhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEV----IKE------MAKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.-+..+++.+++.+..-+...-+...+++. ++. ..+..|.++|+ .-+|.++++||| .
T Consensus 95 ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPts 174 (263)
T COG1127 95 ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174 (263)
T ss_pred ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 001222333344332222111111112222 111 14455666664 348999999999 7
Q ss_pred CCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
++||-....+.++|.+... ..++|++||+...+. ++.+|+.
T Consensus 175 GLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~-~i~Drv~ 217 (263)
T COG1127 175 GLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL-TIADRVA 217 (263)
T ss_pred CCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHH-hhhceEE
Confidence 9999888888888877644 357888888876655 7778874
No 204
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.45 E-value=2.9e-13 Score=107.90 Aligned_cols=159 Identities=19% Similarity=0.326 Sum_probs=91.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-------cccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-------RNIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----- 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++.++....+. ....+-.+.
T Consensus 19 il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 19 ALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGG-LDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred EEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhC-CcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 4445555555553 366999999999999999998 6678889999888654311100 000000000
Q ss_pred -ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.++.+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 011111111000001000 11122222222 1122233442 458999999999 8999999
Q ss_pred HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+++.+... +..+|++||+...+ . +.+|+..+
T Consensus 176 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~-~~d~v~~l 213 (218)
T cd03255 176 GKEVMELLRELNKEAGTTIVVVTHDPELA-E-YADRIIEL 213 (218)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCHHHH-h-hhcEEEEe
Confidence 9999999988754 46788888887654 3 66666544
No 205
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.45 E-value=1.3e-12 Score=104.70 Aligned_cols=204 Identities=17% Similarity=0.237 Sum_probs=107.9
Q ss_pred ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc-----cee--
Q 025758 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL-----ELT-- 87 (248)
Q Consensus 15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-- 87 (248)
++|.++.++.|..++..+...+++++||.|+|||++++.+...+.......+.+...... ........ ...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEES--NESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBS--HHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccch--hhhHHHHHHHHHHHHHHH
Confidence 478888999999999887777899999999999999999998652221111111110000 00000000 000
Q ss_pred ---ee-ccc--ceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------HHHHHHHHHHHH
Q 025758 88 ---TL-SSA--NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------REAQHSLRRTME 155 (248)
Q Consensus 88 ---~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------~~~~~~ll~~le 155 (248)
.. ..+ ....... .............++.+... +...+|+|||++.+. +.....|.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~--------~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 79 SEALGISIPSITLEKISK-DLSEDSFSALERLLEKLKKK--------GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHHHHCCTSTTEEEEC-TS-GG-G--HHHHHHHHHHC--------HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHhhhcccccchhhhh-cchhhHHHHHHHHHHHHHhc--------CCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 00 000 0000000 11112223345555555542 233799999998776 444556777776
Q ss_pred Hh--cCCeeEEEEecCCC------cccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccccH
Q 025758 156 KY--SASCRLILCCNSSS------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL--PSGFATRLAEKSNRSL 225 (248)
Q Consensus 156 ~~--~~~~~~Il~t~~~~------~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~--~~~~~~~l~~~~~g~~ 225 (248)
.. ..+..+|++++... .-..++..|+..+.+++.+.++..+.+...+... ..+ +++.++.+...++|.+
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 62 23344555554422 1222456777789999999999999999887765 544 8999999999999999
Q ss_pred HHHHH
Q 025758 226 RRAIL 230 (248)
Q Consensus 226 r~~~~ 230 (248)
+.+..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87653
No 206
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.45 E-value=4.3e-13 Score=103.88 Aligned_cols=133 Identities=22% Similarity=0.283 Sum_probs=71.0
Q ss_pred CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (248)
+|+|++||+.+++.+.-...++ .|++++||||||||++|+.+.. +..+-...-...-..+...++ ..
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~-lLP~l~~~e~le~~~i~s~~~----------~~ 67 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPS-LLPPLTEEEALEVSKIYSVAG----------LG 67 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHH-CS--CCEECCESS--S-TT-------------S
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHH-hCCCCchHHHhhhcccccccc----------CC
Confidence 4889999999999999888764 4699999999999999999997 655443221111100100000 00
Q ss_pred ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
........+.........+...++.......|..++ ..+..|+++||+..+++...+.|+..+++.
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeis-lAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEIS-LAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGG-GGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred CCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHH-HhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 000011111111111111222222211111222222 346679999999999999999999999874
No 207
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.9e-13 Score=116.01 Aligned_cols=158 Identities=16% Similarity=0.252 Sum_probs=93.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSAN 93 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~ 93 (248)
+++.+...+..|. .+.|.||+|+||||++++|++ +..+++|.+.++|..+....+..+ ..+-++ ..++.+
T Consensus 21 ~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~e 97 (351)
T PRK11432 21 VIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGE 97 (351)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHH
Confidence 3444555555543 467999999999999999998 778999999999976642222111 000000 011112
Q ss_pred eeeeCCCCcCcch---hHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758 94 HVELSPSDAGFQD---RYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (248)
Q Consensus 94 ~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~ 152 (248)
++.+.....+... ...+.+.++. +....+..+|+ ..+|+++++||| ..||...+..+..
T Consensus 98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~ 177 (351)
T PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE 177 (351)
T ss_pred HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 2222111111111 1112222221 22333445553 448999999999 8999999999999
Q ss_pred HHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 153 ~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
.+.+... +..+|++||+..+.. .+.+|+.
T Consensus 178 ~l~~l~~~~g~tii~vTHd~~e~~-~laD~i~ 208 (351)
T PRK11432 178 KIRELQQQFNITSLYVTHDQSEAF-AVSDTVI 208 (351)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHH-HhCCEEE
Confidence 9987644 457777777765543 6667774
No 208
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.6e-13 Score=106.77 Aligned_cols=160 Identities=20% Similarity=0.303 Sum_probs=110.4
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhc-----------C-C-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-D-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----------~-~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
-+||-...+++|+=|.+...+.++..++- | + +.+++|+|+||+|||.||+++|.+- ++..+++.
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlRvv 251 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFLRVV 251 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhhhhhh
Confidence 45777778999999999988888887741 1 2 2349999999999999999999742 22222222
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------ 143 (248)
|...- -.|...+ ...++++++- +. +..|.|+||||+|.++
T Consensus 252 GseLi--------------------QkylGdG-----pklvRqlF~v-A~--------e~apSIvFiDEIdAiGtKRyds 297 (440)
T KOG0726|consen 252 GSELI--------------------QKYLGDG-----PKLVRELFRV-AE--------EHAPSIVFIDEIDAIGTKRYDS 297 (440)
T ss_pred hHHHH--------------------HHHhccc-----hHHHHHHHHH-HH--------hcCCceEEeehhhhhccccccC
Confidence 21100 0111111 1124554543 33 3466799999999874
Q ss_pred -----HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHH
Q 025758 144 -----REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLE 199 (248)
Q Consensus 144 -----~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~ 199 (248)
.+.+..++.+++.. ...+++|+.||..+.+.|+|..-. ..|.|+.|+....++|+.
T Consensus 298 ~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQ 366 (440)
T ss_pred CCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEE
Confidence 34577788888764 345789999999999999998755 579999999888777765
No 209
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.44 E-value=1.1e-12 Score=100.67 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=77.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (248)
.+.|.||||+||||+++++++ +..+.+|.+.+++..+. +.+.....+..+..+-.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~----------------------~~~q~~~LSgGq~qrv~la 83 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAG-QLIPNGDNDEWDGITPV----------------------YKPQYIDLSGGELQRVAIA 83 (177)
T ss_pred EEEEECCCCChHHHHHHHHHc-CCCCCCcEEEECCEEEE----------------------EEcccCCCCHHHHHHHHHH
Confidence 377999999999999999998 67888899888774322 2222222333332222222
Q ss_pred HHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhhee
Q 025758 116 EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
... ..+++++++||+ ..+|+.....+.+.+.+.... ..+|++||+.. ....+.+|+..+
T Consensus 84 ral---------~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l 145 (177)
T cd03222 84 AAL---------LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVF 145 (177)
T ss_pred HHH---------hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 211 226789999999 799999999999999876432 56777777654 344666666443
No 210
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.44 E-value=1.4e-13 Score=110.78 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=90.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--c--cccceee------ec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--N--IDLELTT------LS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~------~~ 90 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....... . ..+..+. .+
T Consensus 15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 15 VVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVG-LVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred eeccceeEecCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 4455555555553 366999999999999999998 67888999999887543111100 0 0000000 01
Q ss_pred ccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
..+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 1111111000000000 01112222221 1112223332 458999999999 8999999999
Q ss_pred HHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 150 ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+++.+... +..+|++||+.. ....+.+|+..+
T Consensus 172 ~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 206 (232)
T cd03218 172 IQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYII 206 (232)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999987754 456777777655 445667777443
No 211
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.44 E-value=6.8e-13 Score=100.91 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=85.3
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (248)
+.+...+.+|. .+.|.||+|+||||+++++++ +..+..|.+.+++.......+.. .....+++.+.
T Consensus 17 ~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~---------~~~~~i~~~~q-- 82 (163)
T cd03216 17 DGVSLSVRRGE--VHALLGENGAGKSTLMKILSG-LYKPDSGEILVDGKEVSFASPRD---------ARRAGIAMVYQ-- 82 (163)
T ss_pred eeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEECCcCCHHH---------HHhcCeEEEEe--
Confidence 33434444443 477999999999999999998 66888899988886543111100 00112333332
Q ss_pred CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhh
Q 025758 103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSR 180 (248)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR 180 (248)
.+..+..+-.+.... ..+|+++++||| ..+|+.....+.+.+.+... +..+|++|++.. ....+.+|
T Consensus 83 -LS~G~~qrl~laral---------~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~ 151 (163)
T cd03216 83 -LSVGERQMVEIARAL---------ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADR 151 (163)
T ss_pred -cCHHHHHHHHHHHHH---------hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 333332222222211 226789999999 79999999999999988754 456677766654 34455666
Q ss_pred hhee
Q 025758 181 CLNI 184 (248)
Q Consensus 181 ~~~i 184 (248)
+..+
T Consensus 152 ~~~l 155 (163)
T cd03216 152 VTVL 155 (163)
T ss_pred EEEE
Confidence 6443
No 212
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.44 E-value=2.9e-13 Score=115.07 Aligned_cols=156 Identities=15% Similarity=0.264 Sum_probs=91.1
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc-ccce------eeeccccee
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLEL------TTLSSANHV 95 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~ 95 (248)
+.+...+..|. .+.|.||+|+||||++++||+ +..+++|.+.++|..+....+..+. .+-+ ...++.+++
T Consensus 21 ~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 21 KDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 33444444443 367999999999999999999 7789999999999766421111110 0000 001111111
Q ss_pred eeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758 96 ELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (248)
Q Consensus 96 ~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l 154 (248)
.+.....+... ...+.++++.+ ....+..+|+ ..+|+++++||| ..||...+..+...+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 177 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI 177 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 11111001000 11122222221 1223334442 448999999999 899999999999999
Q ss_pred HHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 155 EKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 155 e~~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
.+... +.++|++||+..+. ..+.+|+.
T Consensus 178 ~~l~~~~~~tvi~vTHd~~ea-~~l~d~i~ 206 (353)
T TIGR03265 178 RQLQRRLGVTTIMVTHDQEEA-LSMADRIV 206 (353)
T ss_pred HHHHHhcCCEEEEEcCCHHHH-HHhCCEEE
Confidence 87644 45778887776544 46777763
No 213
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=4.1e-13 Score=107.24 Aligned_cols=162 Identities=19% Similarity=0.297 Sum_probs=104.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee--c-------cCCcccccceeee--
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI--D-------AGSRNIDLELTTL-- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~-- 89 (248)
+++.+...+..| ..+++.|+|||||||+++.+++ +..+..|.+.+++.++.. . .+..++..+.+..
T Consensus 19 ~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~G-Ll~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 19 ALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNG-LLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred eeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcC-cCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 333444444444 3478999999999999999998 889999999888865431 0 0111111111111
Q ss_pred cccceeeeCCCCcCcchhHHHH---HHH-----HHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 90 SSANHVELSPSDAGFQDRYVVQ---EVI-----KEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
++.+.+.+.+.+.+....+... +.+ ..+....+..+|+ ..+|.++++||+ .++|+.+..
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 2334456677777666543222 222 2223455667774 337999999999 899999999
Q ss_pred HHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhheeee
Q 025758 149 SLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIRI 186 (248)
Q Consensus 149 ~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i~~ 186 (248)
.+++++.+.... ..+|++||+.+.+. .+.+|+.++.-
T Consensus 176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~-~~ad~v~vl~~ 214 (235)
T COG1122 176 ELLELLKKLKEEGGKTIIIVTHDLELVL-EYADRVVVLDD 214 (235)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHH-hhCCEEEEEEC
Confidence 999999998665 36777777755444 77788755443
No 214
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.44 E-value=2.6e-13 Score=115.99 Aligned_cols=158 Identities=15% Similarity=0.286 Sum_probs=94.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-cccce------eeecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLEL------TTLSSAN 93 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~ 93 (248)
+++.+...+..|. .+.|.||+|+||||++++||+ +..+..|.+.++|..+....+... ..+-+ ...++.+
T Consensus 29 ~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 105 (375)
T PRK09452 29 VISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAG-FETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE 105 (375)
T ss_pred EEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHH
Confidence 3344444444443 467999999999999999998 778899999999986642111111 00000 0111122
Q ss_pred eeeeCCCCcCcch---hHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758 94 HVELSPSDAGFQD---RYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (248)
Q Consensus 94 ~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~ 152 (248)
++.+.....+... ...+.+.++. +....+..+|+ ..+|+++++||| ..||...+..+.+
T Consensus 106 Ni~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~ 185 (375)
T PRK09452 106 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQN 185 (375)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 2222111111111 1112222222 22334445553 458999999999 8999999999999
Q ss_pred HHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 153 ~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
.|.+... +..+|++||+..+.. .+.+|+.
T Consensus 186 ~L~~l~~~~g~tiI~vTHd~~ea~-~laDri~ 216 (375)
T PRK09452 186 ELKALQRKLGITFVFVTHDQEEAL-TMSDRIV 216 (375)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEE
Confidence 9988754 467888888865543 5667763
No 215
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.43 E-value=7e-13 Score=104.92 Aligned_cols=148 Identities=18% Similarity=0.276 Sum_probs=87.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+.+.+...+.+|. .+.+.||||+||||+++++++ +..+.+|.+.+++.+.... .... ..+.+.+.
T Consensus 15 ~l~~~~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~-~~~~-----------~~i~~~~q 79 (208)
T cd03268 15 VLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILG-LIKPDSGEITFDGKSYQKN-IEAL-----------RRIGALIE 79 (208)
T ss_pred eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCCcccch-HHHH-----------hhEEEecC
Confidence 3444444444442 377999999999999999998 6688899999988654311 0000 01111111
Q ss_pred CcCcch------------------hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 101 DAGFQD------------------RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 101 ~~~~~~------------------~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
...... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 111111 11122222221 1112223332 458999999999 89999
Q ss_pred HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.....+.+.+.+... +..+|++||+.. ....+.+|+..+
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l 199 (208)
T cd03268 160 DGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGII 199 (208)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEE
Confidence 999999999988754 345666666544 445666666444
No 216
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.43 E-value=5.6e-13 Score=102.43 Aligned_cols=139 Identities=20% Similarity=0.300 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD 101 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (248)
.+.+...+..|. .+.+.||+|+||||+++++++ +..+.+|.+.+++.++....... ....+.+.+.+
T Consensus 18 l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~----------~~~~i~~~~q~ 84 (173)
T cd03246 18 LRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILG-LLRPTSGRVRLDGADISQWDPNE----------LGDHVGYLPQD 84 (173)
T ss_pred eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHh-ccCCCCCeEEECCEEcccCCHHH----------HHhheEEECCC
Confidence 333334444443 367999999999999999998 66788899988886543111000 01112333322
Q ss_pred cCc----------chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecC
Q 025758 102 AGF----------QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNS 169 (248)
Q Consensus 102 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~ 169 (248)
... +..+..+-.+.... ..+|+++++||| ..+|+.....+.+.+.+... +..+|++|++
T Consensus 85 ~~~~~~tv~~~lLS~G~~qrv~la~al---------~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 85 DELFSGSIAENILSGGQRQRLGLARAL---------YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred CccccCcHHHHCcCHHHHHHHHHHHHH---------hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 221 11111111111111 237789999999 89999999999999988754 4567788887
Q ss_pred CCcccHHHhhhhhee
Q 025758 170 SSKVTEAIRSRCLNI 184 (248)
Q Consensus 170 ~~~~~~~l~sR~~~i 184 (248)
...+ . ..+|+..+
T Consensus 156 ~~~~-~-~~d~v~~l 168 (173)
T cd03246 156 PETL-A-SADRILVL 168 (173)
T ss_pred HHHH-H-hCCEEEEE
Confidence 6543 3 56665444
No 217
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.43 E-value=1.9e-13 Score=109.14 Aligned_cols=160 Identities=19% Similarity=0.263 Sum_probs=90.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--e------eeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--T------TLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+.+|.+.++|.+.............+ + ..+..
T Consensus 17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 17 AVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 4555555555554 366999999999999999998 66888999988886543110000000000 0 00001
Q ss_pred ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
+++.+.....+... ...+.+.++.+ .......+|. ..+|+++++||| ..+|+.....+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 173 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence 11110000000000 01112222211 1112223331 458999999999 899999999999
Q ss_pred HHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+.+...+..+|++||++.. ...+.+|+..+
T Consensus 174 ~~l~~~~~~~tii~~sH~~~~-~~~~~d~i~~l 205 (220)
T cd03263 174 DLILEVRKGRSIILTTHSMDE-AEALCDRIAIM 205 (220)
T ss_pred HHHHHHhcCCEEEEEcCCHHH-HHHhcCEEEEE
Confidence 999987666667777777554 44566776443
No 218
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.43 E-value=5.8e-13 Score=106.17 Aligned_cols=149 Identities=18% Similarity=0.233 Sum_probs=89.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+.+.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.+++.++........ ..+.+.+.
T Consensus 20 il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~-----------~~i~~~~q 85 (218)
T cd03266 20 AVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAG-LLEPDAGFATVDGFDVVKEPAEAR-----------RRLGFVSD 85 (218)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CcCCCCceEEECCEEcccCHHHHH-----------hhEEEecC
Confidence 4445555555443 367999999999999999998 668889999998865431100000 01111111
Q ss_pred CcCcchh----------------------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 101 DAGFQDR----------------------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 101 ~~~~~~~----------------------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
....... ..+.+.++.+ .......+|+ ..+|+++++||| .
T Consensus 86 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 165 (218)
T cd03266 86 STGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTT 165 (218)
T ss_pred CcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111110 1112222221 1111223332 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.||+.....+.+++.+... +..+|++||+.. ....+.+|+..+
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l 209 (218)
T cd03266 166 GLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVL 209 (218)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 9999999999999988743 456777777765 334666666443
No 219
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=7.9e-13 Score=103.30 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-CCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
+.+.+...+..|. .+.|.||||+||||+++++++... .+..|.+.+++.++. .. ....+.+.+
T Consensus 22 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--~~------------~~~~i~~~~ 85 (192)
T cd03232 22 LLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--KN------------FQRSTGYVE 85 (192)
T ss_pred eEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--HH------------hhhceEEec
Confidence 3344444444442 367999999999999999998322 367888888776432 00 011233433
Q ss_pred CCcCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEE
Q 025758 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLIL 165 (248)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il 165 (248)
.........++.+.+....... .+|+ ..+|+++++||| ..+|+.....+.+.+.+... +..+|+
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 163 (192)
T cd03232 86 QQDVHSPNLTVREALRFSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163 (192)
T ss_pred ccCccccCCcHHHHHHHHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3333333333444333211100 2331 347899999999 89999999999999988643 467888
Q ss_pred EecCCCcccHHHhhhhhee
Q 025758 166 CCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 166 ~t~~~~~~~~~l~sR~~~i 184 (248)
+|++.+.....+.+|+..+
T Consensus 164 vtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 164 TIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred EEcCChHHHHhhCCEEEEE
Confidence 8888664344555665443
No 220
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=8.9e-13 Score=104.55 Aligned_cols=159 Identities=15% Similarity=0.223 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------eccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 92 (248)
+.+.+...+.+| .+.|.||||+||||+++++++ +..+..|.+.++|.++............+.. .++.
T Consensus 15 ~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 15 ALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILAT-LTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred EEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 444555555553 577999999999999999998 6788899999888654311000000000000 0011
Q ss_pred ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+..+..+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 170 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 11110000000000 01112222221 1222233442 458999999999 899999999999
Q ss_pred HHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+++......+|++||+... ...+.+|+..+
T Consensus 171 ~~l~~~~~~~tii~vsH~~~~-~~~~~d~i~~l 202 (211)
T cd03264 171 NLLSELGEDRIVILSTHIVED-VESLCNQVAVL 202 (211)
T ss_pred HHHHHHhCCCEEEEEcCCHHH-HHHhCCEEEEE
Confidence 999988666667777766544 45666776544
No 221
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=2e-13 Score=108.97 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--ee------eccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--TT------LSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+.+|.+.+++..+............. +. .++.
T Consensus 15 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 15 AVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTT-LLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred eeeceeEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 4445555554443 367999999999999999998 66888899988886443100000000000 00 0000
Q ss_pred ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
+.+.+.....+... ...+.++++.+ ....+..+|+ ..+|+++++||| ..||+.....+.
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 00100000000100 01122222222 1122334442 458999999999 899999999999
Q ss_pred HHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+.+... +..+|++||+.. ....+.+|+..+
T Consensus 172 ~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l 205 (220)
T cd03265 172 EYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAII 205 (220)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99988754 346777777655 445666776443
No 222
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=8.8e-13 Score=104.59 Aligned_cols=156 Identities=17% Similarity=0.273 Sum_probs=89.1
Q ss_pred HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee------ecccceeee
Q 025758 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT------LSSANHVEL 97 (248)
Q Consensus 25 l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~ 97 (248)
+...+.+|. .+.+.||||+||||+++++++ +..+.+|.+.+++.++....+.. ...+..+. .+..+++.+
T Consensus 17 is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~g-l~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 17 FDLTFAQGE--ITAIVGPSGSGKSTLLNLIAG-FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred eEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 333444443 467999999999999999998 66788899998887543111100 00000000 111111211
Q ss_pred CCC-CcCc--chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758 98 SPS-DAGF--QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (248)
Q Consensus 98 ~~~-~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~ 156 (248)
... .... .....+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.+++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 110 0000 0111223333221 2223334442 458999999999 89999999999999988
Q ss_pred hcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 157 YSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 157 ~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
... +..+|++||+...+ ..+.+|+..+
T Consensus 174 ~~~~~~~tii~~sH~~~~~-~~~~d~i~~l 202 (211)
T cd03298 174 LHAETKMTVLMVTHQPEDA-KRLAQRVVFL 202 (211)
T ss_pred HHHhcCCEEEEEecCHHHH-HhhhCEEEEE
Confidence 743 45677777765444 3566776544
No 223
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.42 E-value=1.3e-13 Score=109.27 Aligned_cols=160 Identities=19% Similarity=0.321 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--ee-------ec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--TT-------LS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-------~~ 90 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++..+....... .....+ +. .+
T Consensus 16 il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 16 ALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNG-LLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 4445555555543 366999999999999999998 66888999998886543110000 000000 00 00
Q ss_pred ccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
..+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 1111111000000000 01122222221 1223334442 458999999999 8999999999
Q ss_pred HHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 150 ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+.+.+... +..+|++||+.. ....+.+|+..+
T Consensus 173 ~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l 207 (211)
T cd03225 173 LLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVL 207 (211)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999988754 456777777754 444566666544
No 224
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.41 E-value=7.7e-13 Score=105.32 Aligned_cols=160 Identities=18% Similarity=0.308 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------- 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++....+.. .....+..
T Consensus 18 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 18 ALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILG-IEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred EEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 3444444455443 366999999999999999998 66788899999886543111100 00000000
Q ss_pred ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.++.+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+...
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 001111111000000000 11122222221 1222334442 458999999999 89999999
Q ss_pred HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+.+.+.+..+ +..+|++||+.+ ....+.+|+..+
T Consensus 175 ~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l 211 (216)
T TIGR00960 175 RDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTL 211 (216)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999988743 456777777755 444566665444
No 225
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.41 E-value=8.8e-13 Score=104.74 Aligned_cols=159 Identities=14% Similarity=0.259 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------eccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 92 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.+......... ...+.. .+..
T Consensus 15 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~v~~~g~~~~~~~~~~~-~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 15 ALDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVTDLPPKDR-DIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCCcccc-eEEEEecChhhccCCCHH
Confidence 4445544555443 477999999999999999998 667888999988865431111100 000000 0001
Q ss_pred ceeeeCCCCcCcchhH---HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 93 NHVELSPSDAGFQDRY---VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
+++.+.....+..... .+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~ 170 (213)
T cd03301 91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170 (213)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1111100000011111 112222221 1222233442 448999999999 899999999999
Q ss_pred HHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+.+... +..+|++||+... ...+.+|+..+
T Consensus 171 ~~l~~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l 204 (213)
T cd03301 171 AELKRLQQRLGTTTIYVTHDQVE-AMTMADRIAVM 204 (213)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEE
Confidence 99988743 4577888777643 34555665443
No 226
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=9.3e-13 Score=105.13 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee------eecccce
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT------TLSSANH 94 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 94 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++... .....+-.+ ..+..++
T Consensus 19 il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~tv~e~ 93 (220)
T cd03293 19 ALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAG-LERPTSGEVLVDGEPVTGP--GPDRGYVFQQDALLPWLTVLDN 93 (220)
T ss_pred EEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECccc--cCcEEEEecccccccCCCHHHH
Confidence 3444555555553 367999999999999999998 6678899998888654310 000000000 0011111
Q ss_pred eeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758 95 VELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (248)
Q Consensus 95 ~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~ 153 (248)
+.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.++
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~ 173 (220)
T cd03293 94 VALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE 173 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 111000000000 01122222221 1222234442 448999999999 89999999999999
Q ss_pred HHHhc-C-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 154 MEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 154 le~~~-~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+.. . +..+|++||+...+ ..+.+|+..+
T Consensus 174 l~~~~~~~~~tiii~sH~~~~~-~~~~d~i~~l 205 (220)
T cd03293 174 LLDIWRETGKTVLLVTHDIDEA-VFLADRVVVL 205 (220)
T ss_pred HHHHHHHcCCEEEEEecCHHHH-HHhCCEEEEE
Confidence 98763 2 45677777776543 4566666544
No 227
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.41 E-value=3.1e-11 Score=101.77 Aligned_cols=197 Identities=16% Similarity=0.129 Sum_probs=122.4
Q ss_pred CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (248)
.+++++|.....+.+.+.+.. ....+|+|+|++||||+++|+.+-..-......-+.+++..+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~-------------- 69 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-------------- 69 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC--------------
Confidence 467899988777766665542 2234599999999999999999986321122222222221110
Q ss_pred ecccceeeeCCCCcCcchhHHHH-HHHHHHHh------cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758 89 LSSANHVELSPSDAGFQDRYVVQ-EVIKEMAK------NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--- 158 (248)
+ .... +.+..-.. ....+.....+...++|||++.|+...+..|+.++++..
T Consensus 70 -----------------~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~ 131 (326)
T PRK11608 70 -----------------E-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELER 131 (326)
T ss_pred -----------------H-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEe
Confidence 0 0000 00000000 000011113345689999999999999999999997632
Q ss_pred --------CCeeEEEEecCC-------CcccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----HcC----CCCCH
Q 025758 159 --------ASCRLILCCNSS-------SKVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEG----LQLPS 211 (248)
Q Consensus 159 --------~~~~~Il~t~~~-------~~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~~~----~~~~~ 211 (248)
.++++|++|+.. ..+.++|..|+ ..|.+||+.. +++..++...+. +.+ ..+++
T Consensus 132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~ 211 (326)
T PRK11608 132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTE 211 (326)
T ss_pred CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 135678777654 24557788887 4677877754 445555544432 222 25789
Q ss_pred HHHHHHHHH-ccccHHHHHHHHHHHhhhc
Q 025758 212 GFATRLAEK-SNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 212 ~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 239 (248)
+++..+... ..||+|++.+.++.++...
T Consensus 212 ~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 212 RARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 999999876 4999999999999988653
No 228
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.41 E-value=1.2e-13 Score=118.82 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-cccccceee--------e
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTT--------L 89 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~ 89 (248)
..+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|......... ..+...+.. .
T Consensus 16 ~~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaG-ll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAING-TLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 334455555555553 366999999999999999998 6788999999998754311110 000000000 0
Q ss_pred cccceeeeCCC----CcC---cchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 90 SSANHVELSPS----DAG---FQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 90 ~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
+..+.+.+... ... ......+.+.++.+ .......+|+ .++|++++|||| ..||+
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~ 172 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 11111111100 000 01112233333322 1222224442 458999999999 89999
Q ss_pred HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhh
Q 025758 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
..+..+++++.+... +..+|+++|+ ......+.+|+.
T Consensus 173 ~~~~~l~~lL~~l~~~g~TIIivsHd-l~~~~~~adrii 210 (402)
T PRK09536 173 NHQVRTLELVRRLVDDGKTAVAAIHD-LDLAARYCDELV 210 (402)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHHhCCEEE
Confidence 999999999998754 3455665555 444556777774
No 229
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.6e-12 Score=105.39 Aligned_cols=156 Identities=26% Similarity=0.445 Sum_probs=99.8
Q ss_pred cccccccHHHHHHHHHHhh------cCC--CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 12 LDQVIVHQDIAQNLKKLVT------EQD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~------~~~--~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
|.++|-+..+.+.+..... ..+ ..+|+|+||||+|||..|+-+|..- |.+++...+
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----------GlDYA~mTG----- 417 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----------GLDYAIMTG----- 417 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----------CCceehhcC-----
Confidence 7888888888888776542 222 2349999999999999999999843 111111010
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC---------CHHHHHHHHHHH
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHSLRRTM 154 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~ll~~l 154 (248)
. .+.| .|....-.+-++++-... ....-++||||+|.+ ......+|..++
T Consensus 418 --------G---DVAP--lG~qaVTkiH~lFDWakk--------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL 476 (630)
T KOG0742|consen 418 --------G---DVAP--LGAQAVTKIHKLFDWAKK--------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL 476 (630)
T ss_pred --------C---Cccc--cchHHHHHHHHHHHHHhh--------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHH
Confidence 0 0011 111111112222332222 235568999999854 333333444433
Q ss_pred H---HhcCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH
Q 025758 155 E---KYSASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK 204 (248)
Q Consensus 155 e---~~~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~ 204 (248)
= +.+....+++.||.|..+.-++-+|+ .++.|+.|..++..++|...+++
T Consensus 477 fRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 477 FRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred HHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 2 23445678888999999999999999 79999999999999998887764
No 230
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.41 E-value=1e-12 Score=104.41 Aligned_cols=160 Identities=16% Similarity=0.291 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++.++....+.. .....+..
T Consensus 17 il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 17 ALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYG-ALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4555555565553 366999999999999999998 66788899988886543111100 00000000
Q ss_pred ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.+..+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 000011100000000000 01122222221 1112223442 448999999999 89999999
Q ss_pred HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+.+.+.+... +..+|++||+.. ....+.+|+.++
T Consensus 174 ~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l 210 (214)
T TIGR02673 174 ERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIIL 210 (214)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEe
Confidence 999999988743 456777777654 444566666544
No 231
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=1.1e-12 Score=105.63 Aligned_cols=160 Identities=20% Similarity=0.260 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------- 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++....+.. .....+..
T Consensus 20 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 20 ALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCING-LERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 4455555555543 367999999999999999998 67888999999887543111000 00000000
Q ss_pred ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.+..+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+...
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence 000111110000000000 01112222221 1112223332 458999999999 79999999
Q ss_pred HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+.+++.+... +..+|++||+.+ ....+.+|+..+
T Consensus 177 ~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l 214 (233)
T cd03258 177 QSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVM 214 (233)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999988743 456777777654 445666776443
No 232
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.40 E-value=3.1e-11 Score=107.22 Aligned_cols=198 Identities=15% Similarity=0.145 Sum_probs=122.9
Q ss_pred CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
-+|++++|.....+.+...+.. ....+++|.|++||||+++|+.|-..-......-+.+++.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~---------------- 272 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCG---------------- 272 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccc----------------
Confidence 5688999998888777766642 2334599999999999999999986332222222222221
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHH----HH---hcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKE----MA---KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-- 158 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-- 158 (248)
... +..--.+.+.. +. .....++....+...++|||++.|+...|..|++++++..
T Consensus 273 -------------~l~--e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~ 337 (526)
T TIGR02329 273 -------------AIA--ESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVV 337 (526)
T ss_pred -------------cCC--hhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEE
Confidence 110 00000000000 00 0001111123455689999999999999999999998642
Q ss_pred ---------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----HcCCCCCHHHH
Q 025758 159 ---------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEGLQLPSGFA 214 (248)
Q Consensus 159 ---------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~~~~~~~~~~~ 214 (248)
.+.++|++|+... .+.+++-.|+ ..|.+||+.. +++..++...+. ..++.++++++
T Consensus 338 r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 417 (526)
T TIGR02329 338 RVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAA 417 (526)
T ss_pred ecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 1236888877653 2444555565 4677777764 455555444443 33556888887
Q ss_pred HH-------HHHH-ccccHHHHHHHHHHHhhh
Q 025758 215 TR-------LAEK-SNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 215 ~~-------l~~~-~~g~~r~~~~~l~~~~~~ 238 (248)
.. +... .+||+|++.|.++.++..
T Consensus 418 ~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 418 QVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 76 5444 489999999999998864
No 233
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.40 E-value=1.7e-12 Score=103.05 Aligned_cols=147 Identities=18% Similarity=0.279 Sum_probs=85.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-cccceee------ecccceeeeCCC-CcCc--c
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELTT------LSSANHVELSPS-DAGF--Q 105 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~-~~~~--~ 105 (248)
.+.|.||||+||||+++++++ +..+.+|.+.+++.++........ ..+..+. .+..+++.+... .... .
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~ 104 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAG-FIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE 104 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence 477999999999999999998 678889999998875431111000 0000000 011111111000 0000 0
Q ss_pred hhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758 106 DRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL 165 (248)
Q Consensus 106 ~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il 165 (248)
....+.+.++. .....+..+|+ ..+|+++++||| ..||...+..+.+++.+... ...+|+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~ 184 (213)
T TIGR01277 105 QQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184 (213)
T ss_pred HHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 01112222222 12223334442 458999999999 89999999999999998753 456777
Q ss_pred EecCCCcccHHHhhhhhee
Q 025758 166 CCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 166 ~t~~~~~~~~~l~sR~~~i 184 (248)
+|++...+ ..+.+|+..+
T Consensus 185 vsh~~~~~-~~~~d~v~~l 202 (213)
T TIGR01277 185 VTHHLSDA-RAIASQIAVV 202 (213)
T ss_pred EeCCHHHH-HhhcCeEEEE
Confidence 77776544 4566666544
No 234
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.40 E-value=1e-12 Score=104.32 Aligned_cols=160 Identities=16% Similarity=0.291 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---cccccceee--------e
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT--------L 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~ 89 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.++...... ......+.. .
T Consensus 15 ~l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 15 VLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINL-LEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred eecCceEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 3444444454443 367999999999999999998 6688899999888654210000 000000000 0
Q ss_pred cccceeeeCCC-CcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 90 SSANHVELSPS-DAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
+..+++.+... ..+.... ..+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 01111111000 0000000 1112222221 1222334442 458999999999 89999999
Q ss_pred HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+.+.+.+... +..+|++||+...+ ..+.+|+.++
T Consensus 172 ~~l~~~l~~~~~~~~tvi~~sh~~~~~-~~~~d~i~~l 208 (213)
T cd03262 172 GEVLDVMKDLAEEGMTMVVVTHEMGFA-REVADRVIFM 208 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 999999998754 35677777765443 4666666544
No 235
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=1.2e-12 Score=105.88 Aligned_cols=160 Identities=17% Similarity=0.261 Sum_probs=90.9
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSAN 93 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~ 93 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++........ ..+-.+ ..++.+
T Consensus 17 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 17 ALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 4455555555553 366999999999999999998 667888999988865431111100 000000 001111
Q ss_pred eeeeCCCCcCc----ch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 94 HVELSPSDAGF----QD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 94 ~~~~~~~~~~~----~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
++.+.....+. .. ...+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11111100000 00 01122222221 1222334442 458999999999 899999999
Q ss_pred HHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 149 ~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+.+++.+... ...+|++||+... ...+.+|+..+
T Consensus 174 ~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l 210 (239)
T cd03296 174 ELRRWLRRLHDELHVTTVFVTHDQEE-ALEVADRVVVM 210 (239)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 99999988754 3567777777643 34556666443
No 236
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.40 E-value=1.8e-12 Score=104.55 Aligned_cols=159 Identities=15% Similarity=0.258 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--ee------eccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--TT------LSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~ 92 (248)
+.+.+...+.+|. .+.+.||||+||||+++++++ +..+.+|.+.++|.++............. +. .+..
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 16 ALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTR-LYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 3444444444443 366999999999999999998 66888999998886543111100000000 00 0001
Q ss_pred ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
+++.+.....+... ...+.+.++.+ .......+|+ ..+|+++++||| ..+|+.....+.
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~ 172 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 11111000000000 01122222221 1112223332 458999999999 899999999999
Q ss_pred HHHHHhc--CCeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~--~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+.+.. .+..+|++||+.+.+. . .+|+..+
T Consensus 173 ~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~i~~l 205 (236)
T TIGR03864 173 AHVRALCRDQGLSVLWATHLVDEIE-A-DDRLVVL 205 (236)
T ss_pred HHHHHHHHhCCCEEEEEecChhhHh-h-CCEEEEE
Confidence 9998875 2467888888877663 3 6777544
No 237
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.40 E-value=3e-12 Score=96.05 Aligned_cols=146 Identities=16% Similarity=0.280 Sum_probs=95.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeecccceeeeCC--CCc-Ccc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSANHVELSP--SDA-GFQ 105 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~-~~~ 105 (248)
+-+.||+|+||||+...+|+ +..|.+|.+.++|.+.....|..+. .+. ...++.+++++.. .-. ...
T Consensus 28 vAi~GpSGaGKSTLLnLIAG-F~~P~~G~i~i~g~d~t~~~P~~RP-VSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~ 105 (231)
T COG3840 28 VAILGPSGAGKSTLLNLIAG-FETPASGEILINGVDHTASPPAERP-VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE 105 (231)
T ss_pred EEEECCCCccHHHHHHHHHh-ccCCCCceEEEcCeecCcCCcccCC-hhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence 55999999999999999999 7899999999999876644554332 111 1223334444332 111 111
Q ss_pred hhHHHHHH-----HHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758 106 DRYVVQEV-----IKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL 165 (248)
Q Consensus 106 ~~~~~~~~-----~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il 165 (248)
..+.+... +..+.+..|..+|+ ..+.+|+++||+ ..++|..++.++.++..... ..++++
T Consensus 106 ~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm 185 (231)
T COG3840 106 QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM 185 (231)
T ss_pred HHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 22222222 23344455667774 336779999999 89999999999999987643 357888
Q ss_pred EecCCCcccHHHhhhhheee
Q 025758 166 CCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 166 ~t~~~~~~~~~l~sR~~~i~ 185 (248)
+|+++++.. .+-+|...+.
T Consensus 186 VTH~~~Da~-~ia~~~~fl~ 204 (231)
T COG3840 186 VTHHPEDAA-RIADRVVFLD 204 (231)
T ss_pred EeCCHHHHH-HhhhceEEEe
Confidence 888887654 5556664443
No 238
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.39 E-value=4.7e-11 Score=106.06 Aligned_cols=203 Identities=15% Similarity=0.188 Sum_probs=120.4
Q ss_pred CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc-cceecccceeeccCCccccccee
Q 025758 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-KVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
+|++++|.....+.+...+.. ....+++|+|++||||+++|+.|-..+...... ....++ +
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~-p--------------- 280 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSH-P--------------- 280 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCC-C---------------
Confidence 688999998888777776642 233459999999999999999998742110000 000001 1
Q ss_pred eecccceeeeCCCCcCcchhHHHH-HHHHH----HHh---cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQ-EVIKE----MAK---NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS- 158 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~---~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~- 158 (248)
++.+.+.... + .... +.+.. +.. ....++....+...|+|||++.|+...|..|++++++..
T Consensus 281 ------fv~inCaal~--e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 281 ------FVAVNCGAIA--E-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEV 351 (538)
T ss_pred ------eEEeecccCC--h-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeE
Confidence 1222222110 0 0000 00000 000 000112223455689999999999999999999998632
Q ss_pred ----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHHH----cCCCCCHHH
Q 025758 159 ----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAKK----EGLQLPSGF 213 (248)
Q Consensus 159 ----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~~----~~~~~~~~~ 213 (248)
.+.++|++|+... .+.+++--|+ ..|.+||+.. +++..++...+.+ .+..+++++
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 431 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAAL 431 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 2346888877653 2334555665 4677777754 4555555555443 455677777
Q ss_pred HHH-------HHHH-ccccHHHHHHHHHHHhhh
Q 025758 214 ATR-------LAEK-SNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 214 ~~~-------l~~~-~~g~~r~~~~~l~~~~~~ 238 (248)
+.. +... .+||+|++.|.++.++..
T Consensus 432 ~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 432 RQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 643 3222 589999999999998864
No 239
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.39 E-value=4.2e-13 Score=107.83 Aligned_cols=160 Identities=14% Similarity=0.197 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee----------c
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL----------S 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 90 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.+.....+.......+..+ +
T Consensus 15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 15 ILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred EecceeeEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 4445555555543 367999999999999999998 66888999998886543111100000000000 0
Q ss_pred ccceeeeCCCCcCcchhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 91 SANHVELSPSDAGFQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
..+++.+.....+........+.++.+ .......+|+ ..+|+++++||| ..||+.....+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~ 171 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 001111100000000011112222221 1222233442 458999999999 899999999999
Q ss_pred HHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+++.+... +..+|++|++.+ ....+.+|+..+
T Consensus 172 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 205 (230)
T TIGR03410 172 RVIRRLRAEGGMAILLVEQYLD-FARELADRYYVM 205 (230)
T ss_pred HHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99988754 456777777755 445666777443
No 240
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.8e-12 Score=104.27 Aligned_cols=147 Identities=18% Similarity=0.333 Sum_probs=86.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee------ecccceeeeCCC-CcCc--c
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT------LSSANHVELSPS-DAGF--Q 105 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~-~~~~--~ 105 (248)
.+.|.||||+||||+++++++ +..+.+|.+.++|.++....... ...+..+. .+..+++.+... .... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 105 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAG-FLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA 105 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence 477999999999999999998 66888899999887543111100 00000000 011111111100 0000 0
Q ss_pred hhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758 106 DRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL 165 (248)
Q Consensus 106 ~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il 165 (248)
....+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+..+.+++.+..+ +..+|+
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii 185 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLM 185 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 111123333222 2233334442 458999999999 89999999999999988643 456777
Q ss_pred EecCCCcccHHHhhhhhee
Q 025758 166 CCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 166 ~t~~~~~~~~~l~sR~~~i 184 (248)
+|++...+ ..+.+|+..+
T Consensus 186 ~sH~~~~~-~~~~d~i~~l 203 (232)
T PRK10771 186 VSHSLEDA-ARIAPRSLVV 203 (232)
T ss_pred EECCHHHH-HHhCCEEEEE
Confidence 77776544 4666776443
No 241
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.5e-12 Score=105.07 Aligned_cols=160 Identities=17% Similarity=0.240 Sum_probs=90.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+. ......+..
T Consensus 15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 15 VLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVG-LLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 3444444555553 366999999999999999998 6688899999888654311110 000000000
Q ss_pred ecccceeeeCCC-CcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 89 LSSANHVELSPS-DAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.++.+++.+... ..+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 011111111000 000010 01122222221 1112223442 458999999999 8999999
Q ss_pred HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+.+.+... +..+|++||+... ...+.+|+..+
T Consensus 172 ~~~l~~~l~~~~~~~~~tvi~vsH~~~~-~~~~~d~v~~l 210 (235)
T cd03261 172 SGVIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVL 210 (235)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhcCEEEEE
Confidence 9999999988743 4567777777654 45667777544
No 242
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=8.7e-13 Score=112.97 Aligned_cols=156 Identities=13% Similarity=0.250 Sum_probs=89.3
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc-ccce------eeeccccee
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLEL------TTLSSANHV 95 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~ 95 (248)
+.+...+..|. .+.|.||+|+||||++++||+ +..+..|.+.++|..+....+.... .+-+ ...++.+++
T Consensus 36 ~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 112 (377)
T PRK11607 36 DDVSLTIYKGE--IFALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI 112 (377)
T ss_pred eeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHH
Confidence 33444444443 467999999999999999998 7789999999999765421111110 0000 011112222
Q ss_pred eeCCCCcCcch---hHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758 96 ELSPSDAGFQD---RYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (248)
Q Consensus 96 ~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l 154 (248)
.+.....+... ...+.+.++. +....+..+|+ ..+|+++++||+ ..||...+..+...+
T Consensus 113 ~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 192 (377)
T PRK11607 113 AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192 (377)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 22111111111 0112222221 11223334542 458999999999 899999998888777
Q ss_pred HHhc--CCeeEEEEecCCCcccHHHhhhhh
Q 025758 155 EKYS--ASCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 155 e~~~--~~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
.+.. .+..+|++||+..+.. .+.+|+.
T Consensus 193 ~~l~~~~g~tii~vTHd~~ea~-~laDri~ 221 (377)
T PRK11607 193 VDILERVGVTCVMVTHDQEEAM-TMAGRIA 221 (377)
T ss_pred HHHHHhcCCEEEEEcCCHHHHH-HhCCEEE
Confidence 6653 2467788877765444 6777763
No 243
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.39 E-value=3.5e-11 Score=110.38 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=122.8
Q ss_pred CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
.+|++++|.....+.+...+.. .....++|+|++||||+++|+++-.........-+.+++..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~------------- 388 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP------------- 388 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC-------------
Confidence 4789999988776665554432 2223499999999999999999987433223222222221110
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHH---HhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEM---AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------ 158 (248)
......+.+... ......+.....+...|+|||++.|+...|..|++++++..
T Consensus 389 ------------------~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~ 450 (638)
T PRK11388 389 ------------------DEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDS 450 (638)
T ss_pred ------------------hHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCC
Confidence 000000111100 00000011112355689999999999999999999998642
Q ss_pred -----CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHHHc------CCCCCHHHHHH
Q 025758 159 -----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAKKE------GLQLPSGFATR 216 (248)
Q Consensus 159 -----~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~~~------~~~~~~~~~~~ 216 (248)
.+.++|++|+... .+.+.|--|+ ..|.+||+.. +++..++...+.+. .+.+++++++.
T Consensus 451 ~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 451 RRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred CceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 1345777777542 3444555555 4567777764 34555555544321 35689999999
Q ss_pred HHHHc-cccHHHHHHHHHHHhhhc
Q 025758 217 LAEKS-NRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 217 l~~~~-~g~~r~~~~~l~~~~~~~ 239 (248)
|.... +||+|++.|.++.++...
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhC
Confidence 99887 999999999999987643
No 244
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.39 E-value=1.6e-12 Score=102.19 Aligned_cols=141 Identities=14% Similarity=0.212 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+++.+...++.|. .+.+.||+|||||||..++++ +..+++|.+.++|.+......... ..-...++++...
T Consensus 20 ~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~~~l~~~~~------~~~R~~~iGfvFQ 90 (226)
T COG1136 20 ALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDLTKLSEKEL------AKLRRKKIGFVFQ 90 (226)
T ss_pred ecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEcCcCCHHHH------HHHHHHhEEEECc
Confidence 3444444455554 366999999999999999998 888999999999865431111000 0001122333333
Q ss_pred CcCcchhHHHHHH----------------------HHH-----HHh-cCCCcCCC------------CCCeeEEEEeCC-
Q 025758 101 DAGFQDRYVVQEV----------------------IKE-----MAK-NRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 101 ~~~~~~~~~~~~~----------------------~~~-----~~~-~~~~~~~~------------~~~~~viiiDE~- 139 (248)
+....+..++.+. ++. ... .+|..+|+ ..+|++|+.|||
T Consensus 91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT 170 (226)
T COG1136 91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT 170 (226)
T ss_pred cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc
Confidence 2222222222221 211 112 44667774 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCC
Q 025758 140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSS 170 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~ 170 (248)
..||......+++++.+... +..+|++||++
T Consensus 171 gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999999999988843 45777777774
No 245
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.39 E-value=4.5e-13 Score=105.47 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee--------eecc
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT--------TLSS 91 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 91 (248)
.+.+.+...+..|. .+.|.|+||+||||+++++++ +..+.+|.+.+++...............+. ..+.
T Consensus 14 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 14 ALFSGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAG-LSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 34455555555553 366999999999999999998 678889999888865431111000000000 0001
Q ss_pred cceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758 92 ANHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~ 153 (248)
.+++.+... ......+.+.++.+ .......+|+ ..+|+++++||| ..||+.....+.+.
T Consensus 91 ~e~l~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 167 (201)
T cd03231 91 LENLRFWHA---DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167 (201)
T ss_pred HHHHHhhcc---cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 111111000 00111122222221 1112223332 458999999999 89999999999999
Q ss_pred HHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758 154 MEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 154 le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
+.+... ...+|++|++...+.+ ..+|+....
T Consensus 168 l~~~~~~g~tiii~sH~~~~~~~-~~~~~~~~~ 199 (201)
T cd03231 168 MAGHCARGGMVVLTTHQDLGLSE-AGARELDLG 199 (201)
T ss_pred HHHHHhCCCEEEEEecCchhhhh-ccceeEecc
Confidence 987643 4567888887766664 666664433
No 246
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.39 E-value=4.6e-13 Score=114.26 Aligned_cols=167 Identities=23% Similarity=0.358 Sum_probs=115.3
Q ss_pred ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc---------
Q 025758 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE--------- 85 (248)
Q Consensus 15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 85 (248)
.+|.-.+.+.+...+..|.+.. |.|.||+|||||++++.+ +..|++|++.++|++..+.+|......-
T Consensus 13 ~f~~~~And~V~l~v~~GeIHa--LLGENGAGKSTLm~iL~G-~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~ 89 (501)
T COG3845 13 RFPGVVANDDVSLSVKKGEIHA--LLGENGAGKSTLMKILFG-LYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFM 89 (501)
T ss_pred EcCCEEecCceeeeecCCcEEE--EeccCCCCHHHHHHHHhC-cccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccc
Confidence 3444445556666777888878 999999999999999998 7899999999999988776775442111
Q ss_pred -eeeecccceeeeCCCC--cCcchhHHHHHHHHHHHhcCCCcCCC---------------------CCCeeEEEEeCC-C
Q 025758 86 -LTTLSSANHVELSPSD--AGFQDRYVVQEVIKEMAKNRPIDTKG---------------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 86 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~viiiDE~-d 140 (248)
.+..++.+++.+..+. ........+++.++.+...+...+.. ..+.+++|+||| .
T Consensus 90 Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTa 169 (501)
T COG3845 90 LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTA 169 (501)
T ss_pred cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1222333444333332 12233344555566665554432221 347889999999 6
Q ss_pred CCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhhheee
Q 025758 141 KLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
-|.|.....|++++....+.+ .+|+|||...++. .+.+|+.+++
T Consensus 170 VLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~-~iaDrvTVLR 214 (501)
T COG3845 170 VLTPQEADELFEILRRLAAEGKTIIFITHKLKEVM-AIADRVTVLR 214 (501)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHH-HhhCeeEEEe
Confidence 889999999999999886654 6899999887776 7788875433
No 247
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=4.2e-13 Score=110.31 Aligned_cols=147 Identities=14% Similarity=0.242 Sum_probs=84.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----ccccceee--------ecccceeeeCCCCc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----NIDLELTT--------LSSANHVELSPSDA 102 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~~~~~~~ 102 (248)
.+.|.||||+||||+++++++ +..+.+|.+.++|.+.....+.. .....+.. .+..+++.+.....
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~G-l~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINR-LIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 367999999999999999998 67888999999886543111100 00000000 00011111100000
Q ss_pred Ccch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--
Q 025758 103 GFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-- 159 (248)
Q Consensus 103 ~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-- 159 (248)
+... ...+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+.....+.+++.+...
T Consensus 131 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~ 210 (269)
T cd03294 131 GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 0000 01122222221 1223334442 458999999999 89999999999999988743
Q ss_pred CeeEEEEecCCCcccHHHhhhhhee
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+..+|++||+.+. ...+.+|+..+
T Consensus 211 g~tiii~tH~~~~-~~~~~d~v~~l 234 (269)
T cd03294 211 QKTIVFITHDLDE-ALRLGDRIAIM 234 (269)
T ss_pred CCEEEEEeCCHHH-HHHhcCEEEEE
Confidence 4567777776553 45677776443
No 248
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.39 E-value=1.7e-12 Score=102.06 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
+.+.+...+.+| ..+.|.||||+||||+++++++.. ..+.+|.+.+++.++....+.... ...+.+.+
T Consensus 15 ~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~---------~~~i~~v~ 83 (200)
T cd03217 15 ILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERA---------RLGIFLAF 83 (200)
T ss_pred eeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHh---------hCcEEEee
Confidence 444555555444 347799999999999999999843 367889999988755421110000 01133333
Q ss_pred CCcCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEE
Q 025758 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLIL 165 (248)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il 165 (248)
.........++.+.++.. +..+|+ ..+|+++++||| ..||+.....+++++.+... ...+|+
T Consensus 84 q~~~~~~~~~~~~~l~~~----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii 159 (200)
T cd03217 84 QYPPEIPGVKNADFLRYV----NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159 (200)
T ss_pred cChhhccCccHHHHHhhc----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 332222222233322111 112221 347899999999 89999999999999988754 356777
Q ss_pred EecCCCcccHH-Hhhhhhee
Q 025758 166 CCNSSSKVTEA-IRSRCLNI 184 (248)
Q Consensus 166 ~t~~~~~~~~~-l~sR~~~i 184 (248)
+|++.. .... +.+|+..+
T Consensus 160 ~sh~~~-~~~~~~~d~i~~l 178 (200)
T cd03217 160 ITHYQR-LLDYIKPDRVHVL 178 (200)
T ss_pred EecCHH-HHHHhhCCEEEEE
Confidence 777765 4445 56776433
No 249
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.39 E-value=6.8e-13 Score=105.48 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec---------
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS--------- 90 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 90 (248)
.+++.+...+..|. .+.|.||||+||||+++++++ +..+..|.+.+++..+... .... ......
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~i~~~--~~~~--~i~~~~q~~~~~~~~ 97 (214)
T PRK13543 25 PVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAG-LLHVESGQIQIDGKTATRG--DRSR--FMAYLGHLPGLKADL 97 (214)
T ss_pred eeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhC-CCCCCCeeEEECCEEccch--hhhh--ceEEeecCcccccCC
Confidence 34455555555543 367999999999999999998 6788899999888654311 0000 000000
Q ss_pred -ccceeeeCCCCcCcchhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 91 -SANHVELSPSDAGFQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
..+++.+.....+........+.+..+. ......+|+ ..+|+++++||| ..+|+.....+.
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (214)
T PRK13543 98 STLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVN 177 (214)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0000000000000001111122222211 111123331 458999999999 899999999999
Q ss_pred HHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758 152 RTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 152 ~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+.+.+.... ..+|++||+... .+.+.+|...
T Consensus 178 ~~l~~~~~~~~tiii~sH~~~~-~~~~~~~i~~ 209 (214)
T PRK13543 178 RMISAHLRGGGAALVTTHGAYA-APPVRTRMLT 209 (214)
T ss_pred HHHHHHHhCCCEEEEEecChhh-hhhhcceEEE
Confidence 999876443 456666666544 4456566543
No 250
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.38 E-value=2.3e-14 Score=108.86 Aligned_cols=162 Identities=15% Similarity=0.214 Sum_probs=112.0
Q ss_pred ccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccc
Q 025758 13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (248)
.+-++.+.+++.++..+.+|.+-+ |.||||+||||+-.++.+ +..+++|++.+++.++..-.-. ....
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GEiVG--LLGPNGAGKTT~Fymi~G-lv~~d~G~i~ld~~diT~lPm~---------~RAr 78 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGEIVG--LLGPNGAGKTTTFYMIVG-LVRPDSGKILLDDEDITKLPMH---------KRAR 78 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCcEEE--EECCCCCCceeEEEEEEE-EEecCCceEEECCcccccCChH---------HHhh
Confidence 333444555555555566665555 999999999999999998 8899999999999766511110 0122
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHHH-----------------------------HhcCCCcCCC------------CCCe
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKEM-----------------------------AKNRPIDTKG------------KRGF 131 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~------------~~~~ 131 (248)
..++|.|.+.+.....++++.+..+ ......++|+ ..+|
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 3467777766655544444443222 2223334443 4489
Q ss_pred eEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeee
Q 025758 132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRI 186 (248)
Q Consensus 132 ~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~ 186 (248)
+.+++||| .+.||-+...+.+++......+.=|+||.|.-.-.-++++|+.+++=
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD 214 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEec
Confidence 99999999 89999999999999988877777888887776666688899866543
No 251
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.38 E-value=3.3e-13 Score=106.56 Aligned_cols=159 Identities=17% Similarity=0.251 Sum_probs=90.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee-------eecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT-------TLSSAN 93 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 93 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.++..........+-.+ ..+..+
T Consensus 15 ~l~~v~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 15 ILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 4444545555553 366999999999999999998 668889999888865421000000000000 001111
Q ss_pred eeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHH
Q 025758 94 HVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (248)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le 155 (248)
++.+.....+ .....+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.+.+.
T Consensus 92 ~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 170 (205)
T cd03226 92 ELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170 (205)
T ss_pred HHhhhhhhcC-ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 1111110000 0111233333322 1222333442 448999999999 8999999999999998
Q ss_pred HhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 156 KYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 156 ~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+... +..+|++||+... ...+.+|+..+
T Consensus 171 ~~~~~~~tii~~sH~~~~-~~~~~d~i~~l 199 (205)
T cd03226 171 ELAAQGKAVIVITHDYEF-LAKVCDRVLLL 199 (205)
T ss_pred HHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 8743 4567777776554 44566666444
No 252
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.38 E-value=1.6e-12 Score=103.29 Aligned_cols=160 Identities=14% Similarity=0.274 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.++....+.. .....+..
T Consensus 16 ~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 16 ALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYK-EELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 3444444444443 367999999999999999998 66788899988886543111100 00000000
Q ss_pred ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.+..+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+...
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 000111110000000000 01122222221 1122233442 448999999999 89999999
Q ss_pred HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+.+.+.+... ...+|++||+... ...+.+|+..+
T Consensus 173 ~~~~~~l~~~~~~~~tiiivtH~~~~-~~~~~d~i~~l 209 (214)
T cd03292 173 WEIMNLLKKINKAGTTVVVATHAKEL-VDTTRHRVIAL 209 (214)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 999999988743 4567777776543 34555655443
No 253
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.3e-12 Score=111.86 Aligned_cols=159 Identities=16% Similarity=0.272 Sum_probs=92.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSAN 93 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~ 93 (248)
+++.+...+..|. .+.|.||||+|||||+++|++ +..+.+|.+.+++..+....+... ..+-.+ ..++.+
T Consensus 18 vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaG-l~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 18 ISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 3444555555543 467999999999999999998 778899999998876542111110 000000 001111
Q ss_pred eeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758 94 HVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (248)
Q Consensus 94 ~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~ 152 (248)
++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.+
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~ 174 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1111110001110 01122222221 1223334442 458999999999 8999999999999
Q ss_pred HHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 153 ~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.|.+... +..+|++||+...+ ..+.+|+.+
T Consensus 175 ~L~~l~~~~g~tvI~vTHd~~~~-~~~~d~i~v 206 (369)
T PRK11000 175 EISRLHKRLGRTMIYVTHDQVEA-MTLADKIVV 206 (369)
T ss_pred HHHHHHHHhCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 9987743 46788888776543 466677643
No 254
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=7.1e-12 Score=103.88 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=105.5
Q ss_pred CCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce
Q 025758 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (248)
|.|.-=.+.+-..+....+..++..+ .+++|.||+|+||||+++.+|..+..+- +++.+...-
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~~---~rV~~~~~l------------ 101 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWPC---VRVNLDSHV------------ 101 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCCe---EEEEecCCC------------
Confidence 34444445555666666666666543 3699999999999999999999874332 111111000
Q ss_pred eeecccceeee---CCCCcCcchhHHHHHHHHHHHhcCCCcC-CCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh-----
Q 025758 87 TTLSSANHVEL---SPSDAGFQDRYVVQEVIKEMAKNRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----- 157 (248)
Q Consensus 87 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~----- 157 (248)
...+.++. ...+.. ... ......+ .....+.++++||++...+..++.|..++|..
T Consensus 102 ---~~~DliG~~~~~l~~g~-----~~~-------~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i 166 (327)
T TIGR01650 102 ---SRIDLVGKDAIVLKDGK-----QIT-------EFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTL 166 (327)
T ss_pred ---ChhhcCCCceeeccCCc-----cee-------EEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEE
Confidence 00000110 000000 000 0000000 01124568999999999999999999999831
Q ss_pred c---------CCeeEEEEecCCC------------cccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758 158 S---------ASCRLILCCNSSS------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (248)
Q Consensus 158 ~---------~~~~~Il~t~~~~------------~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 215 (248)
. ..-.+|.+.|... .+.+++.+|+. ++.+++|+.+...+|+......-.-..+++.++
T Consensus 167 ~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~ 246 (327)
T TIGR01650 167 LDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIIN 246 (327)
T ss_pred CCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHH
Confidence 1 1123455555421 47899999995 578999999999999986542211011355666
Q ss_pred HHHHH
Q 025758 216 RLAEK 220 (248)
Q Consensus 216 ~l~~~ 220 (248)
++++.
T Consensus 247 ~mV~l 251 (327)
T TIGR01650 247 AMVRV 251 (327)
T ss_pred HHHHH
Confidence 66543
No 255
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.38 E-value=2e-11 Score=103.93 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=77.1
Q ss_pred CCeeEEEEeCCCCCC------------HHHHHHHHHHHHHhcCC----------eeEEEEe----cCCCcccHHHhhhh-
Q 025758 129 RGFKVLVLNEVDKLS------------REAQHSLRRTMEKYSAS----------CRLILCC----NSSSKVTEAIRSRC- 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~------------~~~~~~ll~~le~~~~~----------~~~Il~t----~~~~~~~~~l~sR~- 181 (248)
.+..|++|||+|.+. ...|.+||+++|...-+ ..||+.. ..+.++.|.|..|+
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 467799999999874 23689999999964221 2244332 24567999999999
Q ss_pred heeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHcc--------ccHHHHHHHHHHHh
Q 025758 182 LNIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKSN--------RSLRRAILSFETCR 236 (248)
Q Consensus 182 ~~i~~~~~~~~~~~~il~~----~-------~~~~~~--~~~~~~~~~l~~~~~--------g~~r~~~~~l~~~~ 236 (248)
..+.+.+++.+++..||.. . +..+|+ .++++++..|++.+- --+|.+-..++...
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 6899999999999999832 2 333555 478999999997652 23666666666555
No 256
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.38 E-value=2.2e-13 Score=115.75 Aligned_cols=156 Identities=17% Similarity=0.307 Sum_probs=91.1
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-------cccccceee------e
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-------RNIDLELTT------L 89 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------~ 89 (248)
+.+...+..|. .+.|.||+|+|||||++++++ +..+.+|.+.++|.++....+. ....+-++. .
T Consensus 10 ~~vs~~i~~Ge--i~~l~G~sGsGKSTLLr~L~G-l~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 10 NDADLAIAKGE--IFVIMGLSGSGKSTTVRMLNR-LIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred EeeEEEEcCCC--EEEEECCCCChHHHHHHHHhC-CCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 34444444443 367999999999999999998 7789999999999766521111 000000000 0
Q ss_pred cccceeeeCCCCcCcch---hHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 90 SSANHVELSPSDAGFQD---RYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
++.+++.+.....+... ...+.+.++. .....+..+|+ ..+|+++++||| ..||+....
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~ 166 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD 166 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 11111111111111110 0112222221 12233444553 458999999999 899999999
Q ss_pred HHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 149 ~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
.+.+.+.+... +..+|++||+.... ..+.+|+.
T Consensus 167 ~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~ 201 (363)
T TIGR01186 167 SMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIV 201 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 99999987643 45688888876654 35667763
No 257
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.6e-12 Score=102.86 Aligned_cols=141 Identities=18% Similarity=0.337 Sum_probs=92.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcC---c-chhHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG---F-QDRYVVQE 112 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 112 (248)
++++||||||||+|.+++|+.+.-+..+. |+..+ .++++..+.- + ..+.-+..
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~-----------------y~~~~------liEinshsLFSKWFsESgKlV~k 236 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDR-----------------YYKGQ------LIEINSHSLFSKWFSESGKLVAK 236 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCc-----------------cccce------EEEEehhHHHHHHHhhhhhHHHH
Confidence 89999999999999999999874322111 11111 1333333221 1 12223455
Q ss_pred HHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH---------------HHHHHHHHHHHHhcC--CeeEEEEecCCCcccH
Q 025758 113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------------EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTE 175 (248)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------------~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~ 175 (248)
+++++.+.... .+.--.++|||++.+.. .+.|+++.-+++... |..++.++|-.+.+..
T Consensus 237 mF~kI~ELv~d----~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~ 312 (423)
T KOG0744|consen 237 MFQKIQELVED----RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV 312 (423)
T ss_pred HHHHHHHHHhC----CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence 55555543322 44556789999987631 246788888887743 3444444555568999
Q ss_pred HHhhhh-heeeecCCCHHHHHHHHHHHHHH
Q 025758 176 AIRSRC-LNIRINSPTEEQIVKVLEFIAKK 204 (248)
Q Consensus 176 ~l~sR~-~~i~~~~~~~~~~~~il~~~~~~ 204 (248)
++.+|. .+....+|+...+.+|++..++.
T Consensus 313 AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 313 AFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 999999 57788999999999999987664
No 258
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.38 E-value=1.5e-12 Score=110.93 Aligned_cols=160 Identities=14% Similarity=0.254 Sum_probs=93.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCc--ccceecccceeeccCCcc-ccccee------eecc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRN-IDLELT------TLSS 91 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~ 91 (248)
+++.+...+..|. .+.|.||+|+||||+++++|+ +..+++ |.+.++|..+....+... ..+-++ ..++
T Consensus 20 ~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaG-l~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 20 VLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred EEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence 3344444444443 367999999999999999998 778899 999999876531111110 000000 0111
Q ss_pred cceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHH
Q 025758 92 ANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSL 150 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~l 150 (248)
.+++.+.....+... ...+.++++.+ ....+..+|+ ..+|+++++||| ..||+.....+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 111211111011110 11122222221 2223334442 458999999999 89999999999
Q ss_pred HHHHHHhcC---CeeEEEEecCCCcccHHHhhhhhee
Q 025758 151 RRTMEKYSA---SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 151 l~~le~~~~---~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...|.+... +..+|++||+..+. ..+.+|+.++
T Consensus 177 ~~~l~~l~~~~~g~til~vTHd~~ea-~~l~dri~vl 212 (362)
T TIGR03258 177 REEIAALHEELPELTILCVTHDQDDA-LTLADKAGIM 212 (362)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 999987654 35677887776654 4677777443
No 259
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.37 E-value=3.4e-11 Score=106.26 Aligned_cols=170 Identities=21% Similarity=0.266 Sum_probs=101.3
Q ss_pred CCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (248)
.+|++++||..+++.+...+..+ .+++|.||||+||||+++.+++ +..+..+...+....+....+.-.. ... .
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~-llp~~~~~~~le~~~i~s~~g~~~~--~~~-~ 262 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQG-ILPPLTNEEAIETARIWSLVGKLID--RKQ-I 262 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhc-ccCCCCCcEEEeccccccchhhhcc--ccc-c
Confidence 37899999999999999888655 3699999999999999999998 5566665554444322211110000 000 0
Q ss_pred cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------
Q 025758 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------- 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----------- 158 (248)
....+.. +.-.. +....+.......+..+ ...+..+++|||++.+++..++.|+..||+..
T Consensus 263 ~~~Pf~~--p~~s~-----s~~~~~ggg~~~~pG~i-~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~ 334 (499)
T TIGR00368 263 KQRPFRS--PHHSA-----SKPALVGGGPIPLPGEI-SLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334 (499)
T ss_pred ccCCccc--ccccc-----chhhhhCCccccchhhh-hccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCccee
Confidence 0000000 00000 00000000000011111 13355799999999999999999999998642
Q ss_pred --CCeeEEEEecCC-----------------------CcccHHHhhhh-heeeecCCCHHH
Q 025758 159 --ASCRLILCCNSS-----------------------SKVTEAIRSRC-LNIRINSPTEEQ 193 (248)
Q Consensus 159 --~~~~~Il~t~~~-----------------------~~~~~~l~sR~-~~i~~~~~~~~~ 193 (248)
.+..+|.++|.- ..+..+|.+|+ ..+.+++++.++
T Consensus 335 ~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred ccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 335577777742 14888999999 567777765544
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.37 E-value=5.7e-12 Score=96.13 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=80.9
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc-ceeeccCCcccccceeeecccceeeeCCC
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK-TWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
.+.+...+.+|. .+.+.||||+||||+++++++ +..+.+|.+.+++. .+.+...... +...+..+++.+. .
T Consensus 17 l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~~~i~~~~q~~~----~~~~tv~~nl~~~-~ 88 (166)
T cd03223 17 LKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAG-LWPWGSGRIGMPEGEDLLFLPQRPY----LPLGTLREQLIYP-W 88 (166)
T ss_pred eecCeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCCceEEEECCCCc----cccccHHHHhhcc-C
Confidence 334444444443 367999999999999999998 66788888877652 1111111000 0001111112110 0
Q ss_pred CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhh
Q 025758 101 DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179 (248)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~s 179 (248)
....+..+..+-.+.... ..+|+++++||| ..+|+.....+.+.+.+. ...+|++||+.. .. .+.+
T Consensus 89 ~~~LS~G~~~rv~laral---------~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~-~~-~~~d 155 (166)
T cd03223 89 DDVLSGGEQQRLAFARLL---------LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS-LW-KFHD 155 (166)
T ss_pred CCCCCHHHHHHHHHHHHH---------HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh-HH-hhCC
Confidence 111122221111111111 237889999999 799999999999999876 366888888864 33 4666
Q ss_pred hhhe
Q 025758 180 RCLN 183 (248)
Q Consensus 180 R~~~ 183 (248)
|+..
T Consensus 156 ~i~~ 159 (166)
T cd03223 156 RVLD 159 (166)
T ss_pred EEEE
Confidence 6543
No 261
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.37 E-value=7.7e-13 Score=106.71 Aligned_cols=147 Identities=19% Similarity=0.182 Sum_probs=81.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee---------ecccceeeeCCCCcCcch
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT---------LSSANHVELSPSDAGFQD 106 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 106 (248)
.+.|.||||+||||+++++++ +..+.+|.+.+++.................. .++.+.+.+.....+...
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~G-l~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 127 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSG-LLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP 127 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence 377999999999999999998 6678889998887643210000000000000 000000000000000000
Q ss_pred h---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeE
Q 025758 107 R---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRL 163 (248)
Q Consensus 107 ~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~ 163 (248)
. ..+.+.++.+ .......+|+ ..+|+++++||| ..||+.....+.++|.+... +..+
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 207 (236)
T cd03267 128 ARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207 (236)
T ss_pred HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Confidence 0 0111222211 1111223332 458999999999 89999999999999998743 3567
Q ss_pred EEEecCCCcccHHHhhhhhee
Q 025758 164 ILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 164 Il~t~~~~~~~~~l~sR~~~i 184 (248)
|++||+.+ ....+.+|+..+
T Consensus 208 iivsH~~~-~~~~~~d~i~~l 227 (236)
T cd03267 208 LLTSHYMK-DIEALARRVLVI 227 (236)
T ss_pred EEEecCHH-HHHHhCCEEEEE
Confidence 77776654 445666666544
No 262
>PRK10908 cell division protein FtsE; Provisional
Probab=99.37 E-value=2.4e-12 Score=102.92 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=88.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.++....... .....+..
T Consensus 17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 17 ALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICG-IERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 3344444444443 367999999999999999998 66788999988886543111100 00000000
Q ss_pred ecccceeeeCCCCcCcchhH---HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQDRY---VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.+..+++.+.....+..... .+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 00111111100000111111 122222221 1222334442 458999999999 89999999
Q ss_pred HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+.+++.+... +..+|++||+... ...+.+|+..+
T Consensus 174 ~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l 210 (222)
T PRK10908 174 EGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTL 210 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 999999988744 3567777776544 44555666444
No 263
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.37 E-value=2e-12 Score=103.29 Aligned_cols=159 Identities=14% Similarity=0.210 Sum_probs=88.6
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee------ecc
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT------LSS 91 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~ 91 (248)
.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++.......+. ....+-.+. .+.
T Consensus 16 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 16 LFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMG-LLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred eeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 334444444443 367999999999999999998 6688899999888654311110 000000000 011
Q ss_pred cceeeeCCCCcC-cchhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 92 ANHVELSPSDAG-FQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 92 ~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
.+++.+...... ......+.+.++.+ .......+|+ ..+|+++++||| ..||+.....+.
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 172 (222)
T cd03224 93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172 (222)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 111111100000 00111122222222 1222223442 458999999999 899999999999
Q ss_pred HHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+++.+... +..+|++||+.. ....+.+|+..+
T Consensus 173 ~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 205 (222)
T cd03224 173 EAIRELRDEGVTILLVEQNAR-FALEIADRAYVL 205 (222)
T ss_pred HHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEe
Confidence 99988753 456667766644 444666766443
No 264
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.37 E-value=1e-11 Score=109.81 Aligned_cols=200 Identities=17% Similarity=0.182 Sum_probs=130.4
Q ss_pred HHHHHhhcCCCC-eeEEECCCCCCHHHHHHHHHHHHc-------CCCcccceecccceeeccCCcccccceeeeccccee
Q 025758 24 NLKKLVTEQDCP-HLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (248)
Q Consensus 24 ~l~~~~~~~~~~-~ill~Gp~G~GKTtla~~ia~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
.+...+...... -++++|-||||||.+++.+...|. ++....+.++|..++ .+.. ....+
T Consensus 411 f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~--~~~~----------~Y~~I 478 (767)
T KOG1514|consen 411 FLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA--SPRE----------IYEKI 478 (767)
T ss_pred HHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec--CHHH----------HHHHH
Confidence 334444452333 499999999999999999999887 556666666665443 1100 01112
Q ss_pred eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-CCe--eEEEEecCCC-
Q 025758 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASC--RLILCCNSSS- 171 (248)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-~~~--~~Il~t~~~~- 171 (248)
..................-..+. .-+....+.|++|||+|.|=...|..|+.+++.+. ++. .+|.++|...
T Consensus 479 ~~~lsg~~~~~~~al~~L~~~f~-----~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 479 WEALSGERVTWDAALEALNFRFT-----VPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHhcccCcccHHHHHHHHHHhhc-----cCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 21121222222221222112222 11135678899999999886667888888998774 233 4566666653
Q ss_pred ---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---ccccHHHHHHHHHHHhhhccc
Q 025758 172 ---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK---SNRSLRRAILSFETCRVQQLR 241 (248)
Q Consensus 172 ---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~---~~g~~r~~~~~l~~~~~~~~~ 241 (248)
.+...+.||. ..+.|.||+-+++..++..++... ..++.++++.+++. ..||+|.+++++..+...+..
T Consensus 554 PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~ 630 (767)
T KOG1514|consen 554 PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEE 630 (767)
T ss_pred HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhh
Confidence 2444667787 789999999999999999887665 35678888888744 479999999999998866553
No 265
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.37 E-value=5.9e-11 Score=106.00 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=122.0
Q ss_pred CCCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (248)
...+|++++|.....+.+...+.. .....++|+|++||||+++|+++-..-......-+.+++.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca-------------- 264 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCA-------------- 264 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccc--------------
Confidence 346889999987766655544431 1223499999999999999999865322222122222221
Q ss_pred eeeecccceeeeCCCCcCcchhHHHHHHHHHHHh------cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-
Q 025758 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK------NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS- 158 (248)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~- 158 (248)
... +...-.+.+..... ....++....+...++|||++.|++..|..|+.++++..
T Consensus 265 ---------------~~~--~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~ 327 (520)
T PRK10820 265 ---------------SIP--DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 327 (520)
T ss_pred ---------------cCC--HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCc
Confidence 110 00000000000000 000011112345689999999999999999999997631
Q ss_pred ----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHH----HHHcC---CCCC
Q 025758 159 ----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFI----AKKEG---LQLP 210 (248)
Q Consensus 159 ----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~----~~~~~---~~~~ 210 (248)
.+.++|++|+... .+.+.|..|. ..|.+||+.+ +++..++... +.+.+ ..++
T Consensus 328 ~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 328 RRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred ccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 2346888776653 3556787886 4677777754 3444433333 33333 3688
Q ss_pred HHHHHHHHHH-ccccHHHHHHHHHHHhhhc
Q 025758 211 SGFATRLAEK-SNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 211 ~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 239 (248)
+++++.|... ..||+|++.|.++.+....
T Consensus 408 ~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 408 ADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999988 7999999999999888643
No 266
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.37 E-value=2.6e-12 Score=103.15 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----ccccceee-------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----NIDLELTT------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------- 88 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+..|.+.++|..+....+.. ........
T Consensus 25 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 25 ILTGVELVVKRGE--TIALIGESGSGKSTLLAILAG-LDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHc-CCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 3444555555543 467999999999999999998 66888999988886543111100 00000000
Q ss_pred -ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+..+++.+.....+... ...+.+.++.+ ....+..+|+ ..+++++++||| ..||+..
T Consensus 102 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~ 181 (228)
T PRK10584 102 TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181 (228)
T ss_pred CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 000011110000000000 11122222221 1122333442 458999999999 7999999
Q ss_pred HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+.+.+... +..+|++||+...+ .. .+|+.++
T Consensus 182 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~-~d~i~~l 219 (228)
T PRK10584 182 GDKIADLLFSLNREHGTTLILVTHDLQLA-AR-CDRRLRL 219 (228)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHH-Hh-CCEEEEE
Confidence 9999999988743 46788888887643 33 5655443
No 267
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.36 E-value=8.1e-11 Score=105.04 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=124.6
Q ss_pred CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (248)
+..+++|+....+.+...+.. ....+++|+|++||||+++|+++-.........-+.+++..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~-------------- 250 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP-------------- 250 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC--------------
Confidence 568899988888777766643 2233499999999999999999997432222222222221110
Q ss_pred ecccceeeeCCCCcCcchhHHHH-HHHHHHH------hcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758 89 LSSANHVELSPSDAGFQDRYVVQ-EVIKEMA------KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--- 158 (248)
+ ..+. +.+.... .....+.....+...++|||++.|+...+..|++++++..
T Consensus 251 -----------------~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~ 312 (509)
T PRK05022 251 -----------------E-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQR 312 (509)
T ss_pred -----------------h-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEee
Confidence 0 0000 0000000 0000001113345679999999999999999999997532
Q ss_pred --------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----H---cCCCCCHH
Q 025758 159 --------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----K---EGLQLPSG 212 (248)
Q Consensus 159 --------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~---~~~~~~~~ 212 (248)
.++++|++|+... .+.+.|-.|+ ..|.+||+.. +++..++...+. + ....++++
T Consensus 313 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~ 392 (509)
T PRK05022 313 VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA 392 (509)
T ss_pred CCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 2457888887653 3556666666 4577777753 344444443332 2 23568999
Q ss_pred HHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758 213 FATRLAEKS-NRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 213 ~~~~l~~~~-~g~~r~~~~~l~~~~~~~~ 240 (248)
++..|.... .||+|++.|.++.++..+.
T Consensus 393 a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 393 AQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 999998774 8999999999999887544
No 268
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.36 E-value=8.4e-12 Score=92.91 Aligned_cols=111 Identities=16% Similarity=0.298 Sum_probs=75.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHH-
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI- 114 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 114 (248)
.+.+.||||+||||+++++++ +..+..|.+.+++.. .+.+.+. .+..+..+-.+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~~~~---------------------~i~~~~~---lS~G~~~rv~la 82 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTWGSTV---------------------KIGYFEQ---LSGGEKMRLALA 82 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCeE---------------------EEEEEcc---CCHHHHHHHHHH
Confidence 467999999999999999998 667788888776630 1333332 22222222112
Q ss_pred HHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 115 KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+. .+|+++++||| ..+|......+.+.+.+. ...++++|++.+.+ ..+.+|+.++
T Consensus 83 ral~----------~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~-~~~~d~v~~l 140 (144)
T cd03221 83 KLLL----------ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL-DQVATKIIEL 140 (144)
T ss_pred HHHh----------cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH-HHhCCEEEEE
Confidence 2222 26789999999 799999999999999876 34667777765443 4666666444
No 269
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.36 E-value=2.3e-12 Score=103.92 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=89.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccce--ee------ec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLEL--TT------LS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~------~~ 90 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. .....+ +. .+
T Consensus 15 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 15 ALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISG-FLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EecCceEEecCCc--EEEEECCCCCCHHHHHHHHcC-CCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 3444444555443 367999999999999999998 66788899988886543111100 000000 00 01
Q ss_pred ccceeeeCCCCc-Cc---------c---hhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 91 SANHVELSPSDA-GF---------Q---DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 91 ~~~~~~~~~~~~-~~---------~---~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
+.+++.+..... .. . ....+.+.++.+. ......+|+ ..+|+++++|||
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111111110000 00 0 0111222232221 111223332 448999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~-~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+.+.+.. .+..+|++||+.. ....+.+|+..+
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l 216 (236)
T cd03219 172 AGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVL 216 (236)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 8999999999999998875 3456777777655 444667776444
No 270
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.36 E-value=6e-13 Score=107.67 Aligned_cols=160 Identities=18% Similarity=0.306 Sum_probs=91.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---C--cccccceee------e
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---S--RNIDLELTT------L 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~------~ 89 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++..... . ....+-.+. .
T Consensus 16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 16 VLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINK-LEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 4445555555543 467999999999999999998 668889999998876531100 0 000000000 0
Q ss_pred cccceeeeCCCC-cCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 90 SSANHVELSPSD-AGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
++.+++.+.... .+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 111111111000 00000 01122222221 1122223342 448999999999 89999999
Q ss_pred HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+.+++.+... +..+|++|++.+. ...+.+|+..+
T Consensus 173 ~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l 209 (240)
T PRK09493 173 HEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIFI 209 (240)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 999999988753 4567777777654 45677777444
No 271
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.36 E-value=3.2e-12 Score=103.16 Aligned_cols=160 Identities=16% Similarity=0.264 Sum_probs=88.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSAN 93 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~ 93 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.+......... ..+..+ ..+..+
T Consensus 15 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 15 ALDDVNLEVPTGS--LVALLGPSGSGKSTLLRIIAG-LEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 3334444444443 367999999999999999998 667888999888865431111000 000000 000011
Q ss_pred eeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758 94 HVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (248)
Q Consensus 94 ~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~ 152 (248)
++.+.....+... ...+.+.++.+ .......+|. ..+|+++++||| ..||......+.+
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~ 171 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS 171 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1111100000000 01112222221 1111223332 448999999999 8999999999999
Q ss_pred HHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 153 ~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+.+... ...+|++|++.. ....+.+|+..+
T Consensus 172 ~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l 204 (237)
T TIGR00968 172 WLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVM 204 (237)
T ss_pred HHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEE
Confidence 9998754 356777766654 445667777443
No 272
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=3.3e-12 Score=102.61 Aligned_cols=156 Identities=19% Similarity=0.319 Sum_probs=89.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--cc-ccccee-----eeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--RN-IDLELT-----TLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-----~~~~~ 92 (248)
+++.+...+..|. .+.+.||||+||||+++++++ +..+..|.+.+++..+...... .. ..+..+ ..+..
T Consensus 18 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (229)
T cd03254 18 VLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMR-FYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94 (229)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHH
Confidence 5555555555553 367999999999999999998 6678889998888643210000 00 000000 00111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHH-----HHHh-----------cCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIK-----EMAK-----------NRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+..... ....+.+.++ .... .....+|+ ..+|+++++||| ..||
T Consensus 95 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD 171 (229)
T cd03254 95 ENIRLGRPNA---TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171 (229)
T ss_pred HHHhccCCCC---CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 1111111100 0111111111 1111 11233442 458999999999 7999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.....+.+.+.+...+..+|++|++...+ + ..+|+..+
T Consensus 172 ~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~-~~d~i~~l 210 (229)
T cd03254 172 TETEKLIQEALEKLMKGRTSIIIAHRLSTI-K-NADKILVL 210 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence 999999999998876556788888887654 3 36666444
No 273
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=8.8e-13 Score=106.82 Aligned_cols=161 Identities=14% Similarity=0.277 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc---C-C---cccccceee----
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA---G-S---RNIDLELTT---- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~---~-~---~~~~~~~~~---- 88 (248)
.+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++.... . . ......+..
T Consensus 16 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNL-LEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 34455555555543 477999999999999999998 66888999999887542100 0 0 000000000
Q ss_pred ----ecccceeeeCC-CCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758 89 ----LSSANHVELSP-SDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (248)
Q Consensus 89 ----~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (248)
.+..+++.+.. ...+.... ..+.+.++.+ ....+..+|+ ..+|+++++||| ..|
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~L 172 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Confidence 00011110000 00000000 1112222211 1222233442 448999999999 899
Q ss_pred CHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 143 ~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
|+.....+.+++.+... +..+|++|++.. ....+.+|+.++
T Consensus 173 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l 214 (242)
T PRK11124 173 DPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYM 214 (242)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 99999999999988754 355666666655 445666776433
No 274
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.36 E-value=9e-13 Score=107.71 Aligned_cols=160 Identities=17% Similarity=0.256 Sum_probs=90.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee------eecc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT------TLSS 91 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~ 91 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.+....... ....+-.+ ..++
T Consensus 17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 17 LLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSG-ELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 4455555555543 366999999999999999998 6688899999888654211000 00000000 0011
Q ss_pred cceeeeCCCCcCc--c-hhHHHHHHHHHH-----HhcCCCcCCC------------C------CCeeEEEEeCC-CCCCH
Q 025758 92 ANHVELSPSDAGF--Q-DRYVVQEVIKEM-----AKNRPIDTKG------------K------RGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 92 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~-----~~~~~~~~~~------------~------~~~~viiiDE~-d~l~~ 144 (248)
.+++.+....... . ....+.+.++.+ .......+|+ . .+|+++++||| ..||+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 1111111100000 0 011122222221 1222334442 2 47899999999 89999
Q ss_pred HHHHHHHHHHHHhc-C-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 145 EAQHSLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 145 ~~~~~ll~~le~~~-~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.....+.+.+.+.. . +..+|++||+.. ....+.+|+..+
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 214 (258)
T PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLL 214 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 99999999998875 3 456777776654 445677777443
No 275
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.36 E-value=1.3e-12 Score=105.81 Aligned_cols=161 Identities=14% Similarity=0.255 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccce--------e
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLEL--------T 87 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------~ 87 (248)
.+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. .....+ .
T Consensus 16 ~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 16 QALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINR-LVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 35555555555553 367999999999999999998 66788899988886543111000 000000 0
Q ss_pred eecccceeeeCCCCc--------Cc---chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC
Q 025758 88 TLSSANHVELSPSDA--------GF---QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV 139 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~ 139 (248)
..++.+++.+..... .. .....+.+.++.+ ....+..+|+ ..+|+++++|||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 011111111100000 00 0111222233221 1222334442 458999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 -DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 -d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+++.+..+ +..+|++||+... ...+.+|+..+
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~v~~l 219 (243)
T TIGR02315 173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADRIVGL 219 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEE
Confidence 79999999999999988743 4567777777654 44666776443
No 276
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.36 E-value=7.7e-13 Score=107.88 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee------eeccc
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT------TLSSA 92 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 92 (248)
..+.+.+...+.+|. .+.|.||||+|||||++++++ +..+..|.+.+++.++.... ....+-.+ ..++.
T Consensus 25 ~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~--~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAG-LETPSAGELLAGTAPLAEAR--EDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEHHHhh--CceEEEecCccCCCCCcHH
Confidence 344555555555553 366999999999999999998 66788898887775431000 00000000 00111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l 154 (248)
+++.+... . .....+.+.++.+ ....+..+|+ ..+++++|+||| ..||+.....+.+.+
T Consensus 100 enl~~~~~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L 176 (257)
T PRK11247 100 DNVGLGLK--G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176 (257)
T ss_pred HHHHhccc--c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 11111100 0 0011122222221 1122334442 448999999999 899999999999999
Q ss_pred HHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 155 EKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 155 e~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+... +..+|++||+... ...+.+|+..
T Consensus 177 ~~~~~~~~~tviivsHd~~~-~~~~~d~i~~ 206 (257)
T PRK11247 177 ESLWQQHGFTVLLVTHDVSE-AVAMADRVLL 206 (257)
T ss_pred HHHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 87632 4567777777654 4566677643
No 277
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=4.4e-12 Score=102.64 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=88.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee------ec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT------LS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~ 90 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.++....+.. ...+-.+. .+
T Consensus 18 ~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 18 VVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVG-IVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 4445555555443 367999999999999999998 66888999998886543111100 00000000 01
Q ss_pred ccceeeeCCCCc-Ccch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 91 SANHVELSPSDA-GFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 91 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
..+++.+..... .... ...+.+.++.+ .......+|+ ..+|+++++||| ..+|+....
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 111111110000 0000 11122222221 1112223442 458999999999 799999999
Q ss_pred HHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 149 ~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+.+++.+... +..+|++||+.. ....+.+|+..
T Consensus 175 ~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~ 209 (241)
T PRK10895 175 DIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYI 209 (241)
T ss_pred HHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEE
Confidence 99999987654 456677776654 44466677643
No 278
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=3.2e-12 Score=102.96 Aligned_cols=151 Identities=14% Similarity=0.213 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-------cccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-------RNIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++...... ....+-.+.
T Consensus 24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 24 VLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGG-LDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 3444444454443 367999999999999999998 6688899999988755321110 000000000
Q ss_pred -ecccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 89 -LSSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+..+++.+.....+.... ..+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+..
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 0111111110000000000 1122222221 1112223332 458999999999 8999999
Q ss_pred HHHHHHHHHHhc--CCeeEEEEecCCCccc
Q 025758 147 QHSLRRTMEKYS--ASCRLILCCNSSSKVT 174 (248)
Q Consensus 147 ~~~ll~~le~~~--~~~~~Il~t~~~~~~~ 174 (248)
...+.+++.+.. .+..+|++||+.+.+.
T Consensus 181 ~~~l~~~l~~~~~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999998874 3467888888876543
No 279
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1.2e-12 Score=105.37 Aligned_cols=148 Identities=16% Similarity=0.242 Sum_probs=88.9
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.+........ . .+++.+.
T Consensus 15 il~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g-~~~~~~G~i~~~g~~~~~~~~~~-~-----------~i~~~~q 79 (232)
T cd03300 15 ALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAG-FETPTSGEILLDGKDITNLPPHK-R-----------PVNTVFQ 79 (232)
T ss_pred eeccceEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEcCcCChhh-c-----------ceEEEec
Confidence 4445555555543 477999999999999999998 66788899988886443111000 0 1111111
Q ss_pred CcCcchh----------------------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 101 DAGFQDR----------------------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 101 ~~~~~~~----------------------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
....... ..+.+.++.+ ....+..+|. ..+|+++++||| .
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111100 0111111111 1111222331 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.||......+.+++.+... +..+|++|++...+ +.+.+|+..+
T Consensus 160 gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~-~~~~d~i~~l 204 (232)
T cd03300 160 ALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA-LTMSDRIAVM 204 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhcCEEEEE
Confidence 9999999999999988754 45677777776544 5666777443
No 280
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.8e-12 Score=103.32 Aligned_cols=160 Identities=16% Similarity=0.285 Sum_probs=90.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~ 92 (248)
+.+.+...+..|. .+.+.||||+||||+++++++ +..+..|.+.++|..+....... .....+ ...++.
T Consensus 17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (234)
T cd03251 17 VLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPR-FYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVA 93 (234)
T ss_pred ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhc-cccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHH
Confidence 3444444454443 366999999999999999998 66888999988886543111000 000000 001111
Q ss_pred ceeeeCCCCcCcchhHH------HHHHHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 93 NHVELSPSDAGFQDRYV------VQEVIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
+++.+............ +.+.++.+ ....+..+|+ ..+|+++++||| ..||+..
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11211111100000000 01111111 0111223432 458999999999 8999999
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 147 ~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
...+.+.+.+......+|++||+...+ +. .+|+..+.
T Consensus 174 ~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~v~~l~ 210 (234)
T cd03251 174 ERLVQAALERLMKNRTTFVIAHRLSTI-EN-ADRIVVLE 210 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHH-hh-CCEEEEec
Confidence 999999999876666788888887665 34 67775543
No 281
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.35 E-value=5.2e-12 Score=101.01 Aligned_cols=155 Identities=17% Similarity=0.297 Sum_probs=85.3
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee------eccccee
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANHV 95 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 95 (248)
.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++........ ....+..+. .+..+++
T Consensus 16 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~~~~~~~~-~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 16 VNNISLTVPKNS--VYGLLGPNGAGKSTLLKMITG-ILRPTSGEIIFDGHPWTRKDL-HKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred EeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecccccc-ccEEEEcCCCCccccCCHHHHH
Confidence 334444444432 477999999999999999998 667888999888864321000 000000000 0000000
Q ss_pred eeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh
Q 025758 96 ELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~ 157 (248)
.+.....+. ....+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+.....+.+++.+.
T Consensus 92 ~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~ 170 (223)
T TIGR03740 92 KVHTTLLGL-PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF 170 (223)
T ss_pred HHHHHHcCC-CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHH
Confidence 000000000 011122222221 1112223332 458999999999 899999999999999887
Q ss_pred cC-CeeEEEEecCCCcccHHHhhhhh
Q 025758 158 SA-SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 158 ~~-~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
.. +..+|++||+.. ....+.+|+.
T Consensus 171 ~~~~~tiii~sH~~~-~~~~~~d~i~ 195 (223)
T TIGR03740 171 PEQGITVILSSHILS-EVQQLADHIG 195 (223)
T ss_pred HHCCCEEEEEcCCHH-HHHHhcCEEE
Confidence 54 345666666644 4556667763
No 282
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=3.1e-12 Score=108.61 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=90.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------- 88 (248)
+++.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. .....+..
T Consensus 20 il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 20 ALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINL-LERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred EEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 3344444455443 366999999999999999998 67889999999887553111100 00000000
Q ss_pred ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.++.+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 001111111000001100 01122222221 1222334442 458999999999 89999999
Q ss_pred HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..+++++.+... +..+|++||+.+ ....+.+|+.+
T Consensus 177 ~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~ 213 (343)
T PRK11153 177 RSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAV 213 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999988753 456777777765 44567777743
No 283
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.35 E-value=3.2e-11 Score=102.36 Aligned_cols=201 Identities=19% Similarity=0.207 Sum_probs=122.4
Q ss_pred CCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCC--CcccceecccceeeccCCccccc
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
...+.++||.....+.+...+.. ....++++.|++|+||+.+|+.|-. +... ....+.++|..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~-~s~r~~~~PFI~~NCa~~~---------- 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHA-LSARRAEAPFIAFNCAAYS---------- 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHH-hhhcccCCCEEEEEHHHhC----------
Confidence 34567889966655555544432 2223599999999999999999994 3222 2222222221111
Q ss_pred ceeeecccceeeeCCCCcCcchhHHHHHHHHH------HHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH--
Q 025758 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKE------MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-- 156 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~-- 156 (248)
....+ .+.+.. -+.....++....+...+++||+..|++..+..|++++++
T Consensus 143 -------------------en~~~--~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~ 201 (403)
T COG1221 143 -------------------ENLQE--AELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGE 201 (403)
T ss_pred -------------------cCHHH--HHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCc
Confidence 00000 001100 0112222333455677999999999999999999999997
Q ss_pred ---------hcCCeeEEEEecCCC--cccH--HHhhhh--heeeecCCCHH--HHHHHHHHH----HHHcCCC---CCHH
Q 025758 157 ---------YSASCRLILCCNSSS--KVTE--AIRSRC--LNIRINSPTEE--QIVKVLEFI----AKKEGLQ---LPSG 212 (248)
Q Consensus 157 ---------~~~~~~~Il~t~~~~--~~~~--~l~sR~--~~i~~~~~~~~--~~~~il~~~----~~~~~~~---~~~~ 212 (248)
.+.++++|+.|+... .+.. ++-.|+ ..|++|++... ++...++.. +.+.+.. .+++
T Consensus 202 ~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 202 YRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred eEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 234567888877663 4565 777766 46777777543 333333333 3333443 2245
Q ss_pred HHHHHHHH-ccccHHHHHHHHHHHhhhccc
Q 025758 213 FATRLAEK-SNRSLRRAILSFETCRVQQLR 241 (248)
Q Consensus 213 ~~~~l~~~-~~g~~r~~~~~l~~~~~~~~~ 241 (248)
++..+... ..||+|++.|.++.+|.....
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 56665544 699999999999999987763
No 284
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.2e-11 Score=106.86 Aligned_cols=189 Identities=15% Similarity=0.203 Sum_probs=120.8
Q ss_pred CCcccccccHHHHHHHHHHhh----------cCC--CC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 10 KTLDQVIVHQDIAQNLKKLVT----------EQD--CP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~----------~~~--~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
+.|.|+-|..++++.|...+. +.+ .+ +++|+||||||||.+|-++|.... -.-+.+-|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~---~~fisvKG------ 734 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN---LRFISVKG------ 734 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC---eeEEEecC------
Confidence 578899898888888887663 222 22 399999999999999999998431 01111111
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------H
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E 145 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~ 145 (248)
.++.....|. ..+.+++.+.... ...|.|+++||+|.+.| .
T Consensus 735 ------------------PElL~KyIGa-SEq~vR~lF~rA~---------~a~PCiLFFDEfdSiAPkRGhDsTGVTDR 786 (952)
T KOG0735|consen 735 ------------------PELLSKYIGA-SEQNVRDLFERAQ---------SAKPCILFFDEFDSIAPKRGHDSTGVTDR 786 (952)
T ss_pred ------------------HHHHHHHhcc-cHHHHHHHHHHhh---------ccCCeEEEeccccccCcccCCCCCCchHH
Confidence 1111111121 1233666666554 34678999999998853 3
Q ss_pred HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025758 146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (248)
Q Consensus 146 ~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~ 220 (248)
..|.|+.-++... .++.++..|++++-+.+++.... ..+.-+.|+..+..+|++....+.... ++-.++-++..
T Consensus 787 VVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~ 865 (952)
T KOG0735|consen 787 VVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQK 865 (952)
T ss_pred HHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhh
Confidence 4667777776432 33456666788888999998755 478889999999999998766544332 23446777766
Q ss_pred ccc----cHHHHHHHHHHHh
Q 025758 221 SNR----SLRRAILSFETCR 236 (248)
Q Consensus 221 ~~g----~~r~~~~~l~~~~ 236 (248)
++| |+..++-..+..+
T Consensus 866 T~g~tgADlq~ll~~A~l~a 885 (952)
T KOG0735|consen 866 TDGFTGADLQSLLYNAQLAA 885 (952)
T ss_pred cCCCchhhHHHHHHHHHHHH
Confidence 543 5555544444333
No 285
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.35 E-value=3.5e-12 Score=101.90 Aligned_cols=159 Identities=13% Similarity=0.197 Sum_probs=88.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-------ccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-------NIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~----- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....... ...+-.+.
T Consensus 20 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 20 VLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGG-LDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 3444444555543 366999999999999999998 66888999998886543111100 00000000
Q ss_pred -ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+..+.+.+......... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 001111111000000000 11122222221 1122233442 458999999999 7999999
Q ss_pred HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+.+.+... +..+|++||+...+ .. .+|+..+
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~-~~-~d~v~~l 214 (221)
T TIGR02211 177 AKIIFDLMLELNRELNTSFLVVTHDLELA-KK-LDRVLEM 214 (221)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh-cCEEEEE
Confidence 9999999987743 45788888887644 33 3555443
No 286
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=3.4e-12 Score=101.49 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=83.7
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---Ccccccceeeec----------ccceeeeCCCC
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELTTLS----------SANHVELSPSD 101 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~ 101 (248)
..+.|.||||+||||+++++++ +..+.+|.+.++|.+...... ..........+. ..+++.+....
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 102 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKR 102 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhh
Confidence 4477999999999999999998 667888999888865431100 000000000000 00001000000
Q ss_pred cCc-chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--C
Q 025758 102 AGF-QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S 160 (248)
Q Consensus 102 ~~~-~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~ 160 (248)
... .....+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.+++.+... +
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (214)
T cd03297 103 KRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182 (214)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 000 0001122222221 1222334442 458999999999 89999999999999988743 4
Q ss_pred eeEEEEecCCCcccHHHhhhhhee
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|++||+...+ ..+.+|+.++
T Consensus 183 ~tiii~sH~~~~~-~~~~d~i~~l 205 (214)
T cd03297 183 IPVIFVTHDLSEA-EYLADRIVVM 205 (214)
T ss_pred cEEEEEecCHHHH-HHhcCEEEEE
Confidence 5677777776543 4666666444
No 287
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.35 E-value=5.3e-12 Score=100.76 Aligned_cols=156 Identities=16% Similarity=0.236 Sum_probs=90.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---cccccee-----eeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELT-----TLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.......+.. ...+-.+ ..+..
T Consensus 19 ~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 95 (220)
T cd03245 19 ALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAG-LYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95 (220)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHH
Confidence 4445555555553 366999999999999999998 56788898888886432100000 0000000 00111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+.... .....+.+.++. .....+ ..+|+ ..+|+++++||| ..||
T Consensus 96 e~l~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD 172 (220)
T cd03245 96 DNITLGAPL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172 (220)
T ss_pred HHhhcCCCC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 112111100 011112222211 111111 24442 458999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.....+.+.+.+......+|++||+... . .+.+|+..+
T Consensus 173 ~~~~~~l~~~l~~~~~~~tii~~sH~~~~-~-~~~d~v~~l 211 (220)
T cd03245 173 MNSEERLKERLRQLLGDKTLIIITHRPSL-L-DLVDRIIVM 211 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCHHH-H-HhCCEEEEE
Confidence 99999999999987655677888888763 4 477776544
No 288
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.35 E-value=7e-13 Score=105.33 Aligned_cols=160 Identities=18% Similarity=0.267 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee---ccCCcccccce---eeecccce
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI---DAGSRNIDLEL---TTLSSANH 94 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~ 94 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|..+.. ........... ...++.++
T Consensus 14 ~l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 14 VLEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILG-LLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 4455555555554 366999999999999999998 668888999888854310 00000000000 00111111
Q ss_pred eeeCCCCc-C------cchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 95 VELSPSDA-G------FQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 95 ~~~~~~~~-~------~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
+.+..... . ......+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11111000 0 00111223333221 2223334542 448999999999 8999999999
Q ss_pred HHHHHHHhc-CCeeEEEEecCCCcccHHHhhhhhee
Q 025758 150 LRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 150 ll~~le~~~-~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+.+.+.. .+..+|++||+... ...+.+|+..+
T Consensus 171 l~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l 205 (213)
T cd03235 171 IYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLL 205 (213)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEE
Confidence 999998875 34567777777554 44666666544
No 289
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.1e-11 Score=103.42 Aligned_cols=153 Identities=16% Similarity=0.229 Sum_probs=98.8
Q ss_pred CCCCCcccccccHHHHHHHH----HHhhc-------CC--CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 7 YRPKTLDQVIVHQDIAQNLK----KLVTE-------QD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~----~~~~~-------~~--~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
-+|.+|+.++-...+++.+. ..+.+ |+ -.++||+||||||||+++-++|+.|.-.-
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydI----------- 263 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDI----------- 263 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCce-----------
Confidence 36789999987666555444 44332 22 12499999999999999999999762100
Q ss_pred eeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC-C---H-----
Q 025758 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-S---R----- 144 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~---~----- 144 (248)
..+.. ..+..+.. ++.+... ..+..||+|++||.- + .
T Consensus 264 ---------------------ydLeL--t~v~~n~d----Lr~LL~~-------t~~kSIivIEDIDcs~~l~~~~~~~~ 309 (457)
T KOG0743|consen 264 ---------------------YDLEL--TEVKLDSD----LRHLLLA-------TPNKSILLIEDIDCSFDLRERRKKKK 309 (457)
T ss_pred ---------------------EEeee--ccccCcHH----HHHHHHh-------CCCCcEEEEeeccccccccccccccc
Confidence 11111 11111112 3333322 225679999999864 1 0
Q ss_pred ---------HHHHHHHHHHHHhc----CCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHH
Q 025758 145 ---------EAQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKK 204 (248)
Q Consensus 145 ---------~~~~~ll~~le~~~----~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~ 204 (248)
-....||..++..- ...++|+|||+.+.+.|+|..+. .+|++..=+.+..+..+.+.+.-
T Consensus 310 ~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 310 ENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred ccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 01234777777552 23579999999999999999954 58888888888888887776654
No 290
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.35 E-value=5.9e-12 Score=99.57 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=84.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|..... +........ ...+..
T Consensus 17 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 17 LFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAG-LLPPAAGTIKLDGGDIDD--PDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred EEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEeCcc--hhhHhhcEEecCCCcCCCCCcHH
Confidence 3444444444443 367999999999999999998 667888999888864321 000000000 000111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l 154 (248)
+++.+.....+. ....+.+.++.+ .......+|+ ..+|+++++||| ..+|+.....+.+.+
T Consensus 92 ~~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 170 (207)
T PRK13539 92 ENLEFWAAFLGG-EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170 (207)
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 111110000000 011122232222 1222223332 447999999999 799999999999999
Q ss_pred HHhc-CCeeEEEEecCCCcccH
Q 025758 155 EKYS-ASCRLILCCNSSSKVTE 175 (248)
Q Consensus 155 e~~~-~~~~~Il~t~~~~~~~~ 175 (248)
.+.. ....+|++|++...+..
T Consensus 171 ~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 171 RAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHCCCEEEEEeCCchhhcc
Confidence 8763 34678888888776664
No 291
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=3.4e-12 Score=104.21 Aligned_cols=160 Identities=20% Similarity=0.272 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee------eecc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT------TLSS 91 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~ 91 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.+....... +...+-.+ ..+.
T Consensus 17 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 17 ILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFAR-LLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred EEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhC-CcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 4445554554443 367999999999999999998 6678889998888643210000 00000000 0011
Q ss_pred cceeeeCCCC----cCc---chhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 92 ANHVELSPSD----AGF---QDRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 92 ~~~~~~~~~~----~~~---~~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+++.+.... .+. .....+.+.++. .....+..+|+ ..+|+++++||| ..+|+..
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1111111000 000 001112222222 12223334442 458999999999 8999999
Q ss_pred HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+.+.+... +..+|++|++.. ....+.+|+.++
T Consensus 174 ~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l 211 (255)
T PRK11231 174 QVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVL 211 (255)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 9999999988654 456677766654 444677777443
No 292
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.35 E-value=4.7e-11 Score=102.73 Aligned_cols=166 Identities=19% Similarity=0.272 Sum_probs=96.5
Q ss_pred cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecc
Q 025758 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (248)
++++++.+...+.+...+..+ .+++|+||||||||++|+.+|..+.... ....+....+. +.. +.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFH---psy---------SY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFH---QSY---------SY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeec---ccc---------cH
Confidence 566777777777777777643 4699999999999999999998663321 11111111010 000 00
Q ss_pred ccee-eeCCCCcCcch-hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH-HHHHHHHHHHh-----------
Q 025758 92 ANHV-ELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QHSLRRTMEKY----------- 157 (248)
Q Consensus 92 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-~~~ll~~le~~----------- 157 (248)
.+++ ++.+...+... .....+.+..... . ...+.++||||+++.+.+. ...++.++|..
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~-~------p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~ 311 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKE-Q------PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLT 311 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHh-c------ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeee
Confidence 0111 22222222111 1112233333222 1 1256799999999888654 56667777621
Q ss_pred -----------cCCeeEEEEecCCC----cccHHHhhhhheeeecC-CCHHHHHHHHH
Q 025758 158 -----------SASCRLILCCNSSS----KVTEAIRSRCLNIRINS-PTEEQIVKVLE 199 (248)
Q Consensus 158 -----------~~~~~~Il~t~~~~----~~~~~l~sR~~~i~~~~-~~~~~~~~il~ 199 (248)
+.+..+|.|.|..+ .+..++++|+..+.+.+ ++...+.+.+.
T Consensus 312 y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 312 YSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred ccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 23455788888776 57889999999988876 45555555543
No 293
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.35 E-value=1.3e-12 Score=104.72 Aligned_cols=161 Identities=14% Similarity=0.250 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee-------ecc
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT-------LSS 91 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~ 91 (248)
.+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++.++....+.. .....+.. .+.
T Consensus 21 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 97 (225)
T PRK10247 21 KILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV 97 (225)
T ss_pred eeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccH
Confidence 34455555555443 367999999999999999998 66888999988886543111100 00000000 011
Q ss_pred cceeeeCCCCcCcc-hhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 92 ANHVELSPSDAGFQ-DRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
.+++.+........ ....+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (225)
T PRK10247 98 YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177 (225)
T ss_pred HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11111100000000 111122333222 1122223332 458999999999 899999999999
Q ss_pred HHHHHhcC--CeeEEEEecCCCcccHHHhhhhheee
Q 025758 152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
+++.+... +..+|++|++...+ + ..+|+..+.
T Consensus 178 ~~l~~~~~~~~~tvii~sh~~~~~-~-~~d~i~~l~ 211 (225)
T PRK10247 178 EIIHRYVREQNIAVLWVTHDKDEI-N-HADKVITLQ 211 (225)
T ss_pred HHHHHHHHhcCCEEEEEECChHHH-H-hCCEEEEEe
Confidence 99998743 45788888887665 3 466665553
No 294
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=5.6e-12 Score=102.82 Aligned_cols=158 Identities=13% Similarity=0.203 Sum_probs=90.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee------ecccce
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANH 94 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 94 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.+... ......+-.+. .++.++
T Consensus 16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~ 90 (255)
T PRK11248 16 ALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAG-FVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDN 90 (255)
T ss_pred eEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHH
Confidence 4444555555543 367999999999999999998 668889999988865431 10000000000 011111
Q ss_pred eeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758 95 VELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (248)
Q Consensus 95 ~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~ 153 (248)
+.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+.....+.++
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 170 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 111000001111 11122333222 1222334442 458999999999 89999999999999
Q ss_pred HHHhc--CCeeEEEEecCCCcccHHHhhhhhee
Q 025758 154 MEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 154 le~~~--~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
|.+.. .+..+|++||+.. ....+.+|...+
T Consensus 171 L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l 202 (255)
T PRK11248 171 LLKLWQETGKQVLLITHDIE-EAVFMATELVLL 202 (255)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 98863 2456777777765 344666666544
No 295
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.34 E-value=7e-12 Score=98.43 Aligned_cols=147 Identities=14% Similarity=0.191 Sum_probs=83.1
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee----------cc
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL----------SS 91 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 91 (248)
.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++.+.......... ..... +.
T Consensus 16 l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~--~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 16 FEGLSFTLNAGE--ALQVTGPNGIGKTTLLRILAG-LLRPDSGEVRWNGTALAEQRDEPHR--NILYLGHLPGLKPELSA 90 (198)
T ss_pred EeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCEEcccchHHhhh--heEEeccCcccccCCcH
Confidence 344444444442 477999999999999999999 6678889998888654311110000 00000 00
Q ss_pred cceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758 92 ANHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~ 153 (248)
.+.+.+...... .....+.+.++.+ ....+..+|+ ..+|+++++||| ..||......+.+.
T Consensus 91 ~~~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 169 (198)
T TIGR01189 91 LENLHFWAAIHG-GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL 169 (198)
T ss_pred HHHHHHHHHHcC-CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 000100000000 0001122222211 1122223332 458999999999 89999999999999
Q ss_pred HHHhc-CCeeEEEEecCCCccc
Q 025758 154 MEKYS-ASCRLILCCNSSSKVT 174 (248)
Q Consensus 154 le~~~-~~~~~Il~t~~~~~~~ 174 (248)
+.+.. .+..+|++||++..+.
T Consensus 170 l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 170 LRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred HHHHHhCCCEEEEEEccccccc
Confidence 98763 3457888888875443
No 296
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=2.3e-12 Score=106.42 Aligned_cols=159 Identities=16% Similarity=0.246 Sum_probs=94.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--e-------eec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--T-------TLS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-------~~~ 90 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....... .....+ + ..+
T Consensus 22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 22 TLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 4444545555543 366999999999999999998 67889999999887653111100 000000 0 011
Q ss_pred ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
+.+++.+.....+.... ..+.+.++. .....+..+|+ ..+|+++++||| ..||+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 12222221111111111 112222222 22233344552 458999999999 8999999999
Q ss_pred HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+++.+... +..+|++||+...+ . +.+|+.++
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~~~~-~-~~dri~~l 213 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDLDEV-A-LSDRVLVM 213 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence 9999988754 46788888887765 3 57777544
No 297
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.34 E-value=2.5e-11 Score=103.31 Aligned_cols=108 Identities=21% Similarity=0.317 Sum_probs=76.9
Q ss_pred CeeEEEEeCCCCCC------------HHHHHHHHHHHHHhcCC----------eeEEEEe----cCCCcccHHHhhhh-h
Q 025758 130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYSAS----------CRLILCC----NSSSKVTEAIRSRC-L 182 (248)
Q Consensus 130 ~~~viiiDE~d~l~------------~~~~~~ll~~le~~~~~----------~~~Il~t----~~~~~~~~~l~sR~-~ 182 (248)
+..|++|||+|.+. ...|.+||+++|...-+ ..||+.. ..+.++.|.|..|+ .
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 66799999999874 23688999999964221 2233331 24567899999999 6
Q ss_pred eeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHcc--------ccHHHHHHHHHHHhh
Q 025758 183 NIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKSN--------RSLRRAILSFETCRV 237 (248)
Q Consensus 183 ~i~~~~~~~~~~~~il~~----~-------~~~~~~--~~~~~~~~~l~~~~~--------g~~r~~~~~l~~~~~ 237 (248)
++.+.+++.+++..||.. . +..+|+ .++++++..|++.+- --+|.+-.+++....
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 899999999999999943 2 333455 477999999986652 236666666666553
No 298
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.34 E-value=1e-11 Score=100.68 Aligned_cols=169 Identities=14% Similarity=0.170 Sum_probs=94.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (248)
+.|.||||+||||+++++++ +..+.+|.+.+++..+.+....... ....++.+.+......... ......+.++.
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G-~~~p~~G~i~~~g~~i~~~~q~~~~---~~~~tv~e~l~~~~~~~~~-~~~~~~~~l~~ 102 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAG-VLKPDEGDIEIELDTVSYKPQYIKA---DYEGTVRDLLSSITKDFYT-HPYFKTEIAKP 102 (246)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCcCCCCeEEECCceEEEecccccC---CCCCCHHHHHHHHhhhccc-cHHHHHHHHHH
Confidence 78999999999999999998 6688889888877533321111100 0000111111110000000 00011222221
Q ss_pred -----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHH
Q 025758 117 -----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEA 176 (248)
Q Consensus 117 -----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~ 176 (248)
........+|+ ..+++++++||| ..||+.....+.++|.+... +..+|++||+.. ....
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~ 181 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDY 181 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 11222233442 458899999999 89999999999999988743 456777777654 4456
Q ss_pred Hhhhhheeee------cCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 177 IRSRCLNIRI------NSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 177 l~sR~~~i~~------~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
+.+|+.++.= ..-....+..-+...+..+++.+..
T Consensus 182 ~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (246)
T cd03237 182 LADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRR 222 (246)
T ss_pred hCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCEEec
Confidence 7777644311 1112333445555555666665443
No 299
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=3.3e-12 Score=108.78 Aligned_cols=140 Identities=14% Similarity=0.213 Sum_probs=85.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh--------
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR-------- 107 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 107 (248)
.+.|.||||+||||+++++++ +..+.+|.+.+++..+........ . ......+++.+.+....+.
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~~~~~~~~~~----~--~~~~~~i~~v~q~~~l~~~~tv~enl~ 98 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISG-LTRPQKGRIVLNGRVLFDAEKGIC----L--PPEKRRIGYVFQDARLFPHYKVRGNLR 98 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccccccc----c--chhhCCEEEEcCCcccCCCCcHHHHHH
Confidence 477999999999999999998 678889999998876531000000 0 0000112222222111111
Q ss_pred --------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--
Q 025758 108 --------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-- 159 (248)
Q Consensus 108 --------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-- 159 (248)
..+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.+.|.+...
T Consensus 99 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~ 178 (352)
T PRK11144 99 YGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178 (352)
T ss_pred hhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1122222221 1223334442 448999999999 89999999999999987744
Q ss_pred CeeEEEEecCCCcccHHHhhhhhe
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+..+|++||+...+ ..+.+|+.+
T Consensus 179 g~tii~vTHd~~~~-~~~~d~i~~ 201 (352)
T PRK11144 179 NIPILYVSHSLDEI-LRLADRVVV 201 (352)
T ss_pred CCeEEEEecCHHHH-HHhCCEEEE
Confidence 35688888876544 466677643
No 300
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.3e-12 Score=98.20 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=98.8
Q ss_pred CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-----cccceecccceeecc---CCccc
Q 025758 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-----AEKVKVENKTWKIDA---GSRNI 82 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-----~~~~~~~~~~~~~~~---~~~~~ 82 (248)
++.=.+|..++++.+..-++.+.+.. |.||+||||||++|++-+ ++... .|.+.++|+++.... -.-++
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~VTA--lIGPSGcGKST~LR~lNR-mndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr 88 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNKVTA--LIGPSGCGKSTLLRCLNR-MNDLIPGARVEGEVLLDGKNIYDPKVDVVELRR 88 (253)
T ss_pred ceeEEECchhhhccCceeccCCceEE--EECCCCcCHHHHHHHHHh-hcccCcCceEEEEEEECCeeccCCCCCHHHHHH
Confidence 44445888999999988888888777 999999999999999997 54433 366666666543110 00001
Q ss_pred ccceee-------ecccceeeeCCCCcCcch---hHHHHHH---------HHHHHhcCCCcCCC------------CCCe
Q 025758 83 DLELTT-------LSSANHVELSPSDAGFQD---RYVVQEV---------IKEMAKNRPIDTKG------------KRGF 131 (248)
Q Consensus 83 ~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~------------~~~~ 131 (248)
.....+ .+..+++.|.+.-.+... .+.++.. .+........++|+ .-.|
T Consensus 89 ~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~P 168 (253)
T COG1117 89 RVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKP 168 (253)
T ss_pred HheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCC
Confidence 011111 122223333332222222 0111111 12222334445664 2379
Q ss_pred eEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 132 ~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
.||++||| ..|||-+-..+-++|.+..++.++|+.||+..
T Consensus 169 eVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 169 EVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred cEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence 99999999 89999999999999999988888888888864
No 301
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.34 E-value=4e-12 Score=101.92 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC---CCcccceecccceeeccCCcccccce------eeecc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG---PGAEKVKVENKTWKIDAGSRNIDLEL------TTLSS 91 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 91 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +.. +.+|.+.++|.++..........+-. ...++
T Consensus 22 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G-~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 22 ILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISG-RVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred cccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhC-ccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 4444544555443 367999999999999999999 445 78888888886542100000000000 00011
Q ss_pred cceeeeCCCCc---C-cch--hHHHHH-HHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 92 ANHVELSPSDA---G-FQD--RYVVQE-VIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 92 ~~~~~~~~~~~---~-~~~--~~~~~~-~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+++.+..... . ... .....+ .++.+. ......+|+ ..+|+++++||| ..+|+..
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence 11111100000 0 000 000111 222211 112223332 448999999999 7999999
Q ss_pred HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
+..+.+.+.+... ...+|++|++.......+.+|+.++.
T Consensus 179 ~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 9999999988643 45677777876555556777775543
No 302
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=4.4e-12 Score=102.73 Aligned_cols=160 Identities=14% Similarity=0.291 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--e------eecc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--T------TLSS 91 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~------~~~~ 91 (248)
+++.+...+.+|. .+.+.||||+||||+++++++ +..+..|.+.++|.++....... .....+ + ..+.
T Consensus 16 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 16 AVNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINR-LIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred EeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 3444444555543 366999999999999999998 66788899998886543111100 000000 0 0011
Q ss_pred cceeeeCCCCcCcch---hHHHHHHHHHHH-------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 92 ANHVELSPSDAGFQD---RYVVQEVIKEMA-------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
.+++.+.....+... ...+.+.++.+. ...+..+|+ ..+|+++++||| ..+|+....
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 111111000000000 111223333221 111223332 458999999999 899999999
Q ss_pred HHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 149 ~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+.+.+.+... +..+|++||+... ...+.+|+..+
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~-~~~~~d~i~~l 209 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDE-AFRLADRIAIM 209 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 99999988743 4567777777653 35666776444
No 303
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=2.3e-12 Score=106.45 Aligned_cols=159 Identities=15% Similarity=0.242 Sum_probs=94.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee-------eec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT-------TLS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~ 90 (248)
+++.+...+..|.. +.|.||||+|||||++++++ +..+.+|.+.++|+.+...... ....+-.+ ..+
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNG-LLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 55555555665543 66999999999999999998 6788999999999765421110 00000000 001
Q ss_pred ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
+.+++.+.....+.... ..+.+.+.. .....+..+|+ ..+|+++++||| ..||+..+..
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11112111111111111 112222221 12223334442 458999999999 8999999999
Q ss_pred HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+++.+... +..+|++|++.+.+ +. .+|+.++
T Consensus 179 l~~~l~~l~~~~~~tilivsH~~~~~-~~-~d~i~~l 213 (279)
T PRK13635 179 VLETVRQLKEQKGITVLSITHDLDEA-AQ-ADRVIVM 213 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHH-Hc-CCEEEEE
Confidence 9999988754 46788888887765 33 6776443
No 304
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.34 E-value=3.6e-11 Score=101.68 Aligned_cols=153 Identities=23% Similarity=0.336 Sum_probs=88.2
Q ss_pred ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758 15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
++|.++++..+..++..+ .|++|.||||+|||++|+.+|..+..+- .++.+.
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~~---~~i~~t----------------------- 77 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLPF---VRIQCT----------------------- 77 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCCe---EEEecC-----------------------
Confidence 567777777665555444 3689999999999999999999763111 111110
Q ss_pred eeeCCCCcCcchhHHHHHHH--HHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----------C-Ce
Q 025758 95 VELSPSDAGFQDRYVVQEVI--KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------A-SC 161 (248)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----------~-~~ 161 (248)
..+.+++.- ......... .......+..+..... .++++||+++.++..++.|+..+++.. . ..
T Consensus 78 ~~l~p~d~~--G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~ 154 (329)
T COG0714 78 PDLLPSDLL--GTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPP 154 (329)
T ss_pred CCCCHHHhc--CchhHhhhhccCCeEEEecCCcccccc-eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCC
Confidence 111111110 000001000 0001111111111111 599999999999999999999998731 1 12
Q ss_pred eEEEEecCC------CcccHHHhhhh-heeeecCCCHHHHHHHH
Q 025758 162 RLILCCNSS------SKVTEAIRSRC-LNIRINSPTEEQIVKVL 198 (248)
Q Consensus 162 ~~Il~t~~~------~~~~~~l~sR~-~~i~~~~~~~~~~~~il 198 (248)
.+++.|+++ ..+++++.+|| ..+.+++|..++...++
T Consensus 155 f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 155 FIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred CEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 244444333 46899999999 88888888554433333
No 305
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.33 E-value=6.4e-12 Score=101.75 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=90.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--cccccce--ee------ec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--RNIDLEL--TT------LS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~------~~ 90 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++.++...... ......+ +. .+
T Consensus 17 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 17 ALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 3444444455443 367999999999999999998 6678899999988654311100 0000000 00 01
Q ss_pred ccceeeeCCC-CcC-------cc---hhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758 91 SANHVELSPS-DAG-------FQ---DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 91 ~~~~~~~~~~-~~~-------~~---~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
+.+++.+... ... .. ....+.+.++.+. ......+|+ ..+|+++++||| ..
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 1111111000 000 00 1111223333211 111223332 458999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
||+..+..+.+++.+...+..+|++||+.+ ..+.+.+|+..+
T Consensus 174 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 215 (242)
T TIGR03411 174 MTDEETEKTAELLKSLAGKHSVVVVEHDME-FVRSIADKVTVL 215 (242)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 999999999999998866566777777655 455677777544
No 306
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.33 E-value=5.8e-12 Score=107.11 Aligned_cols=158 Identities=13% Similarity=0.240 Sum_probs=93.0
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccce
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSANH 94 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~ 94 (248)
++.+...+.+|. .+.|.||+|+|||||+++|++ +..+.+|.+.++|..+....+... ..+-++ ..++.++
T Consensus 18 l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en 94 (353)
T PRK10851 18 LNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN 94 (353)
T ss_pred EEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence 334444444443 467999999999999999999 778899999999876542111111 101011 0111122
Q ss_pred eeeCCCC----cCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 95 VELSPSD----AGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 95 ~~~~~~~----~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
+.+.... .+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||...+..
T Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~ 174 (353)
T PRK10851 95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174 (353)
T ss_pred HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 2221110 01111 11223333322 2223334552 458999999999 8999999999
Q ss_pred HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+.+.+.+..+ +..+|++||+..... .+.+|+.+
T Consensus 175 l~~~L~~l~~~~g~tii~vTHd~~ea~-~~~Dri~v 209 (353)
T PRK10851 175 LRRWLRQLHEELKFTSVFVTHDQEEAM-EVADRVVV 209 (353)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEE
Confidence 9999988754 356777777765444 56677643
No 307
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.33 E-value=1.5e-12 Score=104.42 Aligned_cols=159 Identities=16% Similarity=0.219 Sum_probs=90.9
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-----CCCcccceecccceeeccC---Ccccccce--e---
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-----GPGAEKVKVENKTWKIDAG---SRNIDLEL--T--- 87 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~--- 87 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +. .+.+|.+.++|.++..... .......+ +
T Consensus 15 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 15 ALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNR-LNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHh-hcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 4444444455443 366999999999999999999 55 7788999988865431110 00000000 0
Q ss_pred --eecccceeeeCCCCcCcch----hHHHHHHHHHH-----HhcC--CCcCCC------------CCCeeEEEEeCC-CC
Q 025758 88 --TLSSANHVELSPSDAGFQD----RYVVQEVIKEM-----AKNR--PIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 88 --~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----~~~~--~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
..++.+++.+.....+... ...+.+.++.+ .... +..+|+ ..+|+++++||| ..
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0111111111110001000 11223333322 1112 244553 448999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
||+.....+.+++.+......+|++||+.. ....+.+|+..
T Consensus 172 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 212 (227)
T cd03260 172 LDPISTAKIEELIAELKKEYTIVIVTHNMQ-QAARVADRTAF 212 (227)
T ss_pred CCHHHHHHHHHHHHHHhhCcEEEEEeccHH-HHHHhCCEEEE
Confidence 999999999999998765566777777755 44466677643
No 308
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.33 E-value=2.8e-12 Score=108.06 Aligned_cols=143 Identities=15% Similarity=0.269 Sum_probs=83.4
Q ss_pred EECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccceeeeCCCCcCcch---hH
Q 025758 39 FYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSANHVELSPSDAGFQD---RY 108 (248)
Q Consensus 39 l~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~---~~ 108 (248)
|.||||+||||+++++++ +..+.+|.+.++|.++....+... ..+-.+ ..++.+++.+.....+... ..
T Consensus 1 l~G~nGsGKSTLl~~iaG-l~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAG-FEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 579999999999999998 778899999998876531111110 000000 0011111111100001110 11
Q ss_pred HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEec
Q 025758 109 VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCN 168 (248)
Q Consensus 109 ~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~ 168 (248)
.+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.+.+.+... +..+|++||
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 122233322 1222334442 458999999999 89999999999999987643 457788888
Q ss_pred CCCcccHHHhhhhhe
Q 025758 169 SSSKVTEAIRSRCLN 183 (248)
Q Consensus 169 ~~~~~~~~l~sR~~~ 183 (248)
+... ...+.+|+.+
T Consensus 160 d~~e-~~~~~d~i~v 173 (325)
T TIGR01187 160 DQEE-AMTMSDRIAI 173 (325)
T ss_pred CHHH-HHHhCCEEEE
Confidence 7654 3466777743
No 309
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.33 E-value=5e-12 Score=106.89 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------- 88 (248)
+++.+...+.+|.. +.+.||||+|||||++++++ +..+++|.+.++|.++....+.. .....+..
T Consensus 20 ~L~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~g-l~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 20 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNL-LERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 44555555655543 56999999999999999998 77899999999997654211100 00011000
Q ss_pred ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.++.+++.+.....+... ...+.+.++.+ ...++..+|+ ..+|+++++||| ..||+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 011111111100001110 11122333222 2233445553 458999999999 89999999
Q ss_pred HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
..+++++.+... +..+|++||+. .....+++|+.
T Consensus 177 ~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~ 212 (343)
T TIGR02314 177 QSILELLKEINRRLGLTILLITHEM-DVVKRICDCVA 212 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 999999998754 45677777765 44457777774
No 310
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.4e-12 Score=93.84 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=87.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (248)
.+.+.||||+||||+.|++|+ +..+.+|.+...+.+....-. +..++.-|.....+.+...++.|.+.
T Consensus 30 ~~~i~G~NG~GKTtLLRilaG-Ll~p~~G~v~~~~~~i~~~~~-----------~~~~~l~yLGH~~giK~eLTa~ENL~ 97 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQNVRE-----------SYHQALLYLGHQPGIKTELTALENLH 97 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHc-ccCCCCCeEEecCCCCccchh-----------hHHHHHHHhhccccccchhhHHHHHH
Confidence 377999999999999999999 889999999888765441110 00122344455555566666666655
Q ss_pred HHHhcCCC------------------------cCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 116 EMAKNRPI------------------------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 116 ~~~~~~~~------------------------~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
........ .+|. ....++-|+||| ..+|++....|-.++....
T Consensus 98 F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~ 177 (209)
T COG4133 98 FWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA 177 (209)
T ss_pred HHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence 44432221 1221 446779999999 7999999999999998764
Q ss_pred C-CeeEEEEecCCCcccHH
Q 025758 159 A-SCRLILCCNSSSKVTEA 176 (248)
Q Consensus 159 ~-~~~~Il~t~~~~~~~~~ 176 (248)
. .+.+|++|+.+..+.++
T Consensus 178 ~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 178 AQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred cCCCEEEEecCCccCCCcc
Confidence 4 45677777776655443
No 311
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.33 E-value=7.2e-12 Score=100.68 Aligned_cols=145 Identities=19% Similarity=0.259 Sum_probs=84.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee------eecccceeeeCCC--CcCcch-
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT------TLSSANHVELSPS--DAGFQD- 106 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~- 106 (248)
.+.|.||||+||||+++++++ +..+.+|.+.++|.++....+. ..+-.+ ..++.+++.+... ......
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~--~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 89 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPD--RMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKS 89 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChh--heEEecCcccCCCCCHHHHHHHHHHhcccCCCHH
Confidence 377999999999999999998 6688899999988654311110 000000 0111111111000 001110
Q ss_pred --hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEE
Q 025758 107 --RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLI 164 (248)
Q Consensus 107 --~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~I 164 (248)
...+.+.++.+ ....+..+|+ ..+|+++|+||| ..+|+.....+.+.+.+..+ +..+|
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii 169 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 01122223221 1223334442 458999999999 79999999999999987643 45677
Q ss_pred EEecCCCcccHHHhhhhhee
Q 025758 165 LCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 165 l~t~~~~~~~~~l~sR~~~i 184 (248)
++||+... ...+.+|+.++
T Consensus 170 ~~sH~~~~-~~~~~d~v~~l 188 (230)
T TIGR01184 170 MVTHDVDE-ALLLSDRVVML 188 (230)
T ss_pred EEeCCHHH-HHHhcCEEEEE
Confidence 77777553 44666776444
No 312
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.33 E-value=1.6e-12 Score=105.81 Aligned_cols=162 Identities=15% Similarity=0.239 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---------Ccccccceee--
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---------SRNIDLELTT-- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-- 88 (248)
.+.+.+...+..|. .+.|.||||+||||+++++++ +..+..|.+.+++..+..... .......+..
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINL-LEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 35555555555553 366999999999999999998 667888999888865531110 0000000000
Q ss_pred ------ecccceeeeCCC-CcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 89 ------LSSANHVELSPS-DAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 89 ------~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.+..+++.+... ..+... ...+.+.++.+ ....+..+|+ ..+|+++++||| .
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~ 173 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTS 173 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 000011100000 000000 01122222221 1112223442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758 141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
.+|+.....+.+++++... +..+|++||+.. ....+.+|+.++.
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~ 218 (250)
T PRK11264 174 ALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD 218 (250)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 9999999999999988754 456777777654 4556777775543
No 313
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.33 E-value=1.7e-12 Score=100.43 Aligned_cols=148 Identities=14% Similarity=0.214 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---ccccceeeecccceeeeC
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTTLSSANHVELS 98 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 98 (248)
.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++.++....+.. ...+..+.. ..+++.
T Consensus 15 l~~~~~~i~~G~--~~~l~G~nGsGKStLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l---~~~gl~ 88 (180)
T cd03214 15 LDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAG-LLKPSSGEILLDGKDLASLSPKELARKIAYVPQAL---ELLGLA 88 (180)
T ss_pred EeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHH---HHcCCH
Confidence 334444444443 367999999999999999998 66888899988886543111100 000000000 000100
Q ss_pred ----CCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCC
Q 025758 99 ----PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS 171 (248)
Q Consensus 99 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~ 171 (248)
......+..+..+-.+.... ..+|+++++||| ..||+.....+.+++.+... +..+|++|++..
T Consensus 89 ~~~~~~~~~LS~G~~qrl~laral---------~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 89 HLADRPFNELSGGERQRVLLARAL---------AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHH---------hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 00111222222111111111 237789999999 79999999999999988754 456777777755
Q ss_pred cccHHHhhhhheee
Q 025758 172 KVTEAIRSRCLNIR 185 (248)
Q Consensus 172 ~~~~~l~sR~~~i~ 185 (248)
. ...+.+|+..+.
T Consensus 160 ~-~~~~~d~~~~l~ 172 (180)
T cd03214 160 L-AARYADRVILLK 172 (180)
T ss_pred H-HHHhCCEEEEEE
Confidence 4 335667765543
No 314
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.33 E-value=1.3e-12 Score=103.12 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=86.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----cccccceee-------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLELTT------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------- 88 (248)
+.+.+...+..|. .+.|.||||+||||+++++++ +..+..|.+.+++.++...... ......+..
T Consensus 13 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 13 ILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGL-LEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEeceEEEEeCCc--EEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 3444444454443 367999999999999999998 6688889998888753210000 000000000
Q ss_pred -ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+..+++.+.....+... ...+.+.++.+ .......+|+ ..+|+++++||| ..||+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 001111111000000000 11122222221 1112223332 458999999999 8999999
Q ss_pred HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhh
Q 025758 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
...+.+++.+... +..+|++||+.. +. .+.+|+
T Consensus 170 ~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~i 203 (206)
T TIGR03608 170 RDEVLDLLLELNDEGKTIIIVTHDPE-VA-KQADRV 203 (206)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEE
Confidence 9999999988643 456778888765 33 344443
No 315
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1e-12 Score=106.07 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccceee--------e
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTT--------L 89 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~ 89 (248)
.+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....... .....+.. .
T Consensus 19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcC-CCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 34555555555554 366999999999999999998 66888999998887543111000 00000000 0
Q ss_pred cccceeeeCCCCcCcc-hhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 90 SSANHVELSPSDAGFQ-DRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
++.+++.+........ ....+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+.....
T Consensus 96 tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~ 175 (237)
T PRK11614 96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175 (237)
T ss_pred cHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHH
Confidence 1111111100000000 011122222222 1223334442 448999999999 8999999999
Q ss_pred HHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 150 ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+++.+... +..+|++|++... ...+.+|+..+
T Consensus 176 l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l 210 (237)
T PRK11614 176 IFDTIEQLREQGMTIFLVEQNANQ-ALKLADRGYVL 210 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCcHHH-HHhhCCEEEEE
Confidence 9999988744 4567777766543 34667777444
No 316
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.4e-12 Score=104.74 Aligned_cols=162 Identities=14% Similarity=0.153 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccCCc-cccccee------
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAGSR-NIDLELT------ 87 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~------ 87 (248)
.+.+.+...+.+|. .+.+.||||+||||+++++++. .. +..|.+.++|.+........ .....+.
T Consensus 17 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 17 EVLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRL-IELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhcc-CCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 34555555555553 3679999999999999999994 44 35888888886543110000 0000000
Q ss_pred --eecccceeeeCCCCcCc--ch---hHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC
Q 025758 88 --TLSSANHVELSPSDAGF--QD---RYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV 139 (248)
Q Consensus 88 --~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~ 139 (248)
..++.+++.+....... .. ...+.+.++.+. ...+..+|+ ..+|+++++|||
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP 173 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173 (250)
T ss_pred CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00111111110000000 00 111222233221 112223432 458999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 140 -d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
..||+.....+.+.+.+...+..+|++|++.. ....+.+|+..+.
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~ 219 (250)
T PRK14247 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQ-QAARISDYVAFLY 219 (250)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 89999999999999998755566777777655 4446667775543
No 317
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.33 E-value=1.5e-12 Score=103.47 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=88.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcc--------hhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ--------DRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 108 (248)
+.|.||||+||||+++++.+ +.-+.+|+++++|.....+....-+..........+.++-.+...... +..
T Consensus 53 vgflGaNGAGKSTtLKmLTG-ll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~ 131 (325)
T COG4586 53 VGFLGANGAGKSTTLKMLTG-LLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDD 131 (325)
T ss_pred EEEEcCCCCcchhhHHHHhC-ccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHH
Confidence 77999999999999999999 778999999999974321110000000000000111111111100000 000
Q ss_pred HHHHHHHHHHhc---------CCCcCC-C-----------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEE
Q 025758 109 VVQEVIKEMAKN---------RPIDTK-G-----------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLI 164 (248)
Q Consensus 109 ~~~~~~~~~~~~---------~~~~~~-~-----------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~I 164 (248)
...+-++.+.+. .-..+| + ...|+|++|||| =.||..++..++..+.++.. +++++
T Consensus 132 ~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVl 211 (325)
T COG4586 132 EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211 (325)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence 111111111111 111122 1 458999999999 58999999999999987743 46777
Q ss_pred EEecCCCcccHHHhhhhheeeecCCCHH
Q 025758 165 LCCNSSSKVTEAIRSRCLNIRINSPTEE 192 (248)
Q Consensus 165 l~t~~~~~~~~~l~sR~~~i~~~~~~~~ 192 (248)
++||+...+. +++.|+..|+-...-.+
T Consensus 212 lTTH~~~di~-~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 212 LTTHIFDDIA-TLCDRVLLIDQGQLVFD 238 (325)
T ss_pred EEecchhhHH-HhhhheEEeeCCcEeec
Confidence 7777766654 89999877766655443
No 318
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.33 E-value=6.3e-12 Score=99.19 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee----------c
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL----------S 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 90 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++......... ..... +
T Consensus 16 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~p~~G~v~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 16 LFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAG-LARPDAGEVLWQGEPIRRQRDEYHQ--DLLYLGHQPGIKTELT 90 (204)
T ss_pred EEecceEEECCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEcccchHHhhh--heEEeCCccccCcCCc
Confidence 4445555555543 467999999999999999998 6688899998888654311100000 00000 1
Q ss_pred ccceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758 91 SANHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~ 152 (248)
..+++.+.....+......+.+.++.+ .......+|+ ..+|+++++||| ..+|+.....+.+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 170 (204)
T PRK13538 91 ALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA 170 (204)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 111111100000000111122222211 1222223332 458999999999 7999999999999
Q ss_pred HHHHhcC-CeeEEEEecCCCccc
Q 025758 153 TMEKYSA-SCRLILCCNSSSKVT 174 (248)
Q Consensus 153 ~le~~~~-~~~~Il~t~~~~~~~ 174 (248)
++.+... ...+|++|++...+.
T Consensus 171 ~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 171 LLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred HHHHHHHCCCEEEEEecChhhhc
Confidence 9987643 457788888765543
No 319
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=4.4e-12 Score=104.40 Aligned_cols=159 Identities=13% Similarity=0.257 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-Ccccccceee---------ec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT---------LS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~ 90 (248)
+.+.+...+..|. .+.|.||||+|||||++++++ +..+.+|.+.++|.++..... .......+.. .+
T Consensus 24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 24 ALKNVSFEINEGE--YVAILGHNGSGKSTISKILTG-LLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 4444544555443 366999999999999999998 668889999998875531110 0000000000 01
Q ss_pred ccceeeeCCCCcCcchhH---HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQDRY---VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
..+++.+.....+..... .+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 111111110000111110 122222221 1222334442 458999999999 8999999999
Q ss_pred HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+++++.+... +..+|++|++...+ . +.+|+..+
T Consensus 181 l~~~l~~~~~~~~~tiii~sH~~~~~-~-~~d~v~~l 215 (271)
T PRK13632 181 IKKIMVDLRKTRKKTLISITHDMDEA-I-LADKVIVF 215 (271)
T ss_pred HHHHHHHHHHhcCcEEEEEEechhHH-h-hCCEEEEE
Confidence 9999988753 35788888887765 3 56776433
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.33 E-value=1.4e-11 Score=96.50 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=76.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce------eeecccceeeeCCCCcCcchhHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL------TTLSSANHVELSPSDAGFQDRYV 109 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 109 (248)
.+.|.||||+||||+++++++ +..+.+|.+.+++.++..... ....+-. ...+..+++.+.....+ ....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~~~~~-~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--~~~~ 103 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAG-IMQPSSGNIYYKNCNINNIAK-PYCTYIGHNLGLKLEMTVFENLKFWSEIYN--SAET 103 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCcccChhhh-hhEEeccCCcCCCccCCHHHHHHHHHHhcc--cHHH
Confidence 477999999999999999998 678899999988865431100 0000000 00000011100000000 0011
Q ss_pred HHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh-cCCeeEEEEecCC
Q 025758 110 VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSS 170 (248)
Q Consensus 110 ~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~-~~~~~~Il~t~~~ 170 (248)
..+.++.+ .......+|+ ..+|+++++||| ..+|+.....+.+.+.+. ..+..+|++||+.
T Consensus 104 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 183 (195)
T PRK13541 104 LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE 183 (195)
T ss_pred HHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 12211111 1112223332 448999999999 799999999999999754 3346788888887
Q ss_pred Cccc
Q 025758 171 SKVT 174 (248)
Q Consensus 171 ~~~~ 174 (248)
..+.
T Consensus 184 ~~i~ 187 (195)
T PRK13541 184 SSIK 187 (195)
T ss_pred cccc
Confidence 6543
No 321
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.3e-12 Score=113.25 Aligned_cols=169 Identities=20% Similarity=0.291 Sum_probs=112.6
Q ss_pred CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc-----
Q 025758 11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE----- 85 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 85 (248)
++.+-+|.-.+++.+...+..|.+.. |.|.||+|||||++++++ ...+++|.+.++|++..+.+|......-
T Consensus 13 ~i~K~FggV~AL~~v~l~v~~GEV~a--L~GeNGAGKSTLmKiLsG-v~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 13 GISKSFGGVKALDGVSLTVRPGEVHA--LLGENGAGKSTLMKILSG-VYPPDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred cceEEcCCceeeccceeEEeCceEEE--EecCCCCCHHHHHHHHhC-cccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 44445677778888888888887777 999999999999999999 7799999999999877655554332111
Q ss_pred -----eeeecccceeee--CCCC-cCcchhHHHH----HHHHHHHhc-CCC----cCCC------------CCCeeEEEE
Q 025758 86 -----LTTLSSANHVEL--SPSD-AGFQDRYVVQ----EVIKEMAKN-RPI----DTKG------------KRGFKVLVL 136 (248)
Q Consensus 86 -----~~~~~~~~~~~~--~~~~-~~~~~~~~~~----~~~~~~~~~-~~~----~~~~------------~~~~~viii 136 (248)
++.+++..++.+ .+.. .+..+....+ +.++.+.-. .+. .++. ..+.+|+|+
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 122233333332 2222 2333333222 222222110 011 1110 337789999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758 137 NEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 137 DE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
||| ..|+......|++++++.... ..+|++||+.+++. .+.+|+.+
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~-~i~DritV 217 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF-EIADRITV 217 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH-HhcCEEEE
Confidence 999 789999999999999998654 57999999887777 78888743
No 322
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=4e-12 Score=104.79 Aligned_cols=158 Identities=19% Similarity=0.320 Sum_probs=91.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee-------eec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT-------TLS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~ 90 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++...... ....+-.+ ..+
T Consensus 20 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 20 ALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred eeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 4555555555554 366999999999999999998 6788899999988755311000 00000000 001
Q ss_pred ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
+.+++.+.....+.... ..+.+.++. .....+..+|+ ..+|+++++||| ..+|+..+..
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 11111111110111110 112222221 11223334442 458999999999 8999999999
Q ss_pred HHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhh
Q 025758 150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 150 ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
+++++.+... +..+|++||+.+. ...+.+|+.
T Consensus 177 l~~~l~~~~~~g~tili~tH~~~~-~~~~~d~i~ 209 (274)
T PRK13647 177 LMEILDRLHNQGKTVIVATHDVDL-AAEWADQVI 209 (274)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEE
Confidence 9999988743 4567777777554 445677763
No 323
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.32 E-value=2.3e-12 Score=100.54 Aligned_cols=148 Identities=17% Similarity=0.290 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---cccccceeee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTTL-------- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------- 89 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++...... ......+...
T Consensus 7 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGE--VLALLGANGAGKSTLLLHLNG-LLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 3444555555554 366999999999999999998 6688899999888654311000 0000000000
Q ss_pred -cccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 90 -SSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
++.+++.+.....+.... ..+.+.++.+ ....+..+|+ ..+|+++++||| ..||+...
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 011111110000000100 1122222221 1222333442 458999999999 89999999
Q ss_pred HHHHHHHHHhcC-CeeEEEEecCCC
Q 025758 148 HSLRRTMEKYSA-SCRLILCCNSSS 171 (248)
Q Consensus 148 ~~ll~~le~~~~-~~~~Il~t~~~~ 171 (248)
..+.+++.+... +..+|++||+.+
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999988744 457888888764
No 324
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.32 E-value=5.6e-12 Score=101.86 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee-----eeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT-----TLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~ 92 (248)
+++.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.++|.+....... +...+-.+ ..+..
T Consensus 18 ~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 18 ILKGLSLTIPPGK--TVALVGSSGCGKSTVVSLLER-FYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred ceeceEEEecCCC--EEEEEeCCCCCHHHHHHHHhc-cCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 3444444444443 377999999999999999999 6678889998888643210000 00000000 01111
Q ss_pred ceeeeCCCCcCcchhHHHHHH-----HHHHH-----------hcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEV-----IKEMA-----------KNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+...... .....+. +.... ...+..+|+ ..+|+++++||| ..||
T Consensus 95 e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD 171 (238)
T cd03249 95 ENIRYGKPDAT---DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171 (238)
T ss_pred HHhhccCCCCC---HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 22222111100 0001111 11110 111223442 458999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.....+.+.+.+...+..+|++|++.+.+ . +.+|+.++
T Consensus 172 ~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~-~-~~d~v~~l 210 (238)
T cd03249 172 AESEKLVQEALDRAMKGRTTIVIAHRLSTI-R-NADLIAVL 210 (238)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-h-hCCEEEEE
Confidence 999999999998876445688888887665 4 57776444
No 325
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=6.3e-12 Score=101.72 Aligned_cols=160 Identities=16% Similarity=0.269 Sum_probs=91.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC------ccccccee------e
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS------RNIDLELT------T 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------~ 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++....+. ....+-.+ .
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 16 ALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNG-LVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 4444554555543 366999999999999999998 6678889998888654321100 00000000 0
Q ss_pred ecccceeeeCCCC--------cCc---chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 LSSANHVELSPSD--------AGF---QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.++.+++.+.... .+. .....+.+.++.+ ....+..+|+ ..+|+++++|||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1111111110000 000 0011122222221 1122234442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+.+.+... +..+|++||+.+. ...+.+|+.++
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l 218 (241)
T cd03256 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGL 218 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 89999999999999988743 4567777777655 44667776443
No 326
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.32 E-value=1.1e-11 Score=99.06 Aligned_cols=155 Identities=14% Similarity=0.219 Sum_probs=89.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~ 92 (248)
+.+.+...+..|. .+.+.||||+||||+++++++ +..+..|.+.+++..+....... .....+ ...+..
T Consensus 19 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 95 (221)
T cd03244 19 VLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFR-LVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR 95 (221)
T ss_pred cccceEEEECCCC--EEEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence 4555555555553 367999999999999999998 66888899988886442100000 000000 000111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHh-----------cCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAK-----------NRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+... .....+.+.++. ... .....+|. ..+|+++++||| ..||
T Consensus 96 enl~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD 171 (221)
T cd03244 96 SNLDPFGE----YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVD 171 (221)
T ss_pred HHhCcCCC----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 11111100 011111221111 111 12233442 458999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+..+..+.+++.+...+..+|++|++...+. . .+|+..+
T Consensus 172 ~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~-~d~i~~l 210 (221)
T cd03244 172 PETDALIQKTIREAFKDCTVLTIAHRLDTII-D-SDRILVL 210 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-h-CCEEEEE
Confidence 9999999999998766667888888876653 2 4565443
No 327
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=6.5e-12 Score=101.63 Aligned_cols=159 Identities=16% Similarity=0.223 Sum_probs=92.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--ee-----eccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--TT-----LSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-----~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++....+.. .....+ +. .+..
T Consensus 18 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 18 ILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINR-LIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94 (241)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence 4455555555543 467999999999999999998 66889999999886543111000 000000 00 0111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~ 153 (248)
+++.+.....+ .....+.+.++.+ ....+..+|+ ..+|+++++||| ..+|+.....+.+.
T Consensus 95 e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (241)
T PRK14250 95 DNIEYGPMLKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173 (241)
T ss_pred HHHhcchhhcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11111100000 0111222333221 1223334442 458999999999 89999999999999
Q ss_pred HHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 154 le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+... +..+|++||+... ...+.+|+..+
T Consensus 174 l~~~~~~~g~tii~~sH~~~~-~~~~~d~i~~l 205 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQ-AKRIGDYTAFL 205 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHH-HHHhCCEEEEE
Confidence 988743 4567777777654 44677777544
No 328
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.32 E-value=9.5e-12 Score=97.86 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++............+ ...++.
T Consensus 16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 16 LLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAG-LLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92 (200)
T ss_pred EEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence 4444444454443 477999999999999999998 67888999999887553110000000000 000011
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM 154 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l 154 (248)
+.+.+.... . .....+.+.++.+ .......+|+ ..+|+++++||| ..||+.....+.+.+
T Consensus 93 ~~~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l 170 (200)
T PRK13540 93 ENCLYDIHF-S-PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170 (200)
T ss_pred HHHHHHHhc-C-cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 111110000 0 0011122233321 1111223332 458999999999 899999999999999
Q ss_pred HHhc-CCeeEEEEecCCCcc
Q 025758 155 EKYS-ASCRLILCCNSSSKV 173 (248)
Q Consensus 155 e~~~-~~~~~Il~t~~~~~~ 173 (248)
.+.. ....+|++|++...+
T Consensus 171 ~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 171 QEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred HHHHHcCCEEEEEeCCchhc
Confidence 9863 345678888776543
No 329
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.32 E-value=8.2e-12 Score=100.18 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=90.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC----Ccccccce--ee------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLEL--TT------ 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~------ 88 (248)
+.+.+...+..|. .+.|.||||+||||+++++++ +..+..|.+.++|.+.....+ .......+ +.
T Consensus 20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 20 ALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILG-LLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 4455555555553 467999999999999999998 668889999998875432110 00000000 00
Q ss_pred --ecccceeeeCCCCcCc-chhHHH----HHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758 89 --LSSANHVELSPSDAGF-QDRYVV----QEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (248)
.++.+++.+....... ...... .+.++.+ ....+..+|+ ..+|+++++||| ..|
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~L 176 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSAL 176 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 0000111100000000 000000 1222221 1122233442 458999999999 899
Q ss_pred CHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 143 ~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
|+.....+.+.+.+... +..+|++||+.. ....+.+|+..+
T Consensus 177 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 219 (228)
T cd03257 177 DVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVM 219 (228)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 99999999999988754 456777777754 344566666544
No 330
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.32 E-value=6.8e-12 Score=102.45 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=91.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---ccccceee------ecc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTT------LSS 91 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~ 91 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|..+....... ...+-.+. .++
T Consensus 16 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 16 IVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAG-ALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 4445555555443 367999999999999999998 66888899998886543111000 00000000 011
Q ss_pred cceeeeC--CC-C-cCcc---hhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 92 ANHVELS--PS-D-AGFQ---DRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 92 ~~~~~~~--~~-~-~~~~---~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+++.+. .. . .... ....+.+.++.+ .......+|+ ..+|+++++||| ..||+..
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 1111110 00 0 0000 011122233221 1222334442 448999999999 8999999
Q ss_pred HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+++.+... +..+|++|++.. ....+.+|+.++
T Consensus 173 ~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 210 (256)
T TIGR03873 173 QLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVL 210 (256)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999988754 356677777655 445667777443
No 331
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.31 E-value=6.5e-12 Score=107.10 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=85.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-----Ccccccceee--------ecccceeeeCCCCc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-----SRNIDLELTT--------LSSANHVELSPSDA 102 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~~~ 102 (248)
.+.|.||||+||||+++++++ +..+.+|.+.++|.++..... .......+.. .++.+++.+.....
T Consensus 25 i~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAG-LTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 367999999999999999998 678889999998876531110 0000000000 01111111110000
Q ss_pred Ccch-hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--Ce
Q 025758 103 GFQD-RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SC 161 (248)
Q Consensus 103 ~~~~-~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~ 161 (248)
.... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.+.+.+... +.
T Consensus 104 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 183 (354)
T TIGR02142 104 RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183 (354)
T ss_pred ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 0000 11122333221 1223334442 448999999999 89999999999999988754 45
Q ss_pred eEEEEecCCCcccHHHhhhhhe
Q 025758 162 RLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+|++||+.+.+ ..+.+|+.+
T Consensus 184 tiiivtH~~~~~-~~~~d~i~~ 204 (354)
T TIGR02142 184 PILYVSHSLQEV-LRLADRVVV 204 (354)
T ss_pred EEEEEecCHHHH-HHhCCEEEE
Confidence 678888776544 466677643
No 332
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.9e-12 Score=106.17 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---cccccceee------ec
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT------LS 90 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~ 90 (248)
.+++.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++...... ....+..+. .+
T Consensus 21 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSR-LMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcC-CCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 35555555555553 467999999999999999998 6678889998888654311100 000000000 01
Q ss_pred ccceeeeC--CCC---cCcc--hhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHH
Q 025758 91 SANHVELS--PSD---AGFQ--DRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (248)
Q Consensus 91 ~~~~~~~~--~~~---~~~~--~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~ 145 (248)
..+++.+. ... .... ....+.+.++. .....+..+|+ ..+|+++++||| ..||+.
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 177 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 11111111 000 0000 11122233322 12223334442 458999999999 799999
Q ss_pred HHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 146 ~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
....+++.+.+... +..+|++|++.. ....+.+|+..+
T Consensus 178 ~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l 217 (265)
T PRK10253 178 HQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIAL 217 (265)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999988743 345666666654 455777877443
No 333
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=7.3e-12 Score=102.78 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-c--ccccee------eec
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N--IDLELT------TLS 90 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~------~~~ 90 (248)
.+++.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.++|.+........ . ..+..+ ..+
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGR-HQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 34555555555543 366999999999999999998 66788899988886542110000 0 000000 001
Q ss_pred ccceeeeCCC-C---cCc---chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHH
Q 025758 91 SANHVELSPS-D---AGF---QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (248)
Q Consensus 91 ~~~~~~~~~~-~---~~~---~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~ 145 (248)
..+++.+... . .+. .....+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1111111100 0 000 0111122222221 2223334552 458999999999 899999
Q ss_pred HHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 146 ~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
....+.+++.+... +..+|++||+.. ....+.+|+..+
T Consensus 182 ~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l 221 (265)
T PRK10575 182 HQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVAL 221 (265)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999988743 456777777755 444666776444
No 334
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=8.3e-12 Score=100.72 Aligned_cols=156 Identities=17% Similarity=0.287 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-c--ccc-----ceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N--IDL-----ELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~-----~~~~~~~~ 92 (248)
+++.+...+..| ..+.|.||||+||||+++++++ +..+..|.+.+++.......... . ..+ .+...+..
T Consensus 16 ~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G-l~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 16 VLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFR-FYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhc-ccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 333444444443 2477999999999999999998 66788899988876432100000 0 000 00001111
Q ss_pred ceeeeCCCCcCcchhHHHHH---------HHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQE---------VIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~---------~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+..... .. ....+ .+..+ .......+|+ ..+|+++++||| ..||
T Consensus 93 ~nl~~~~~~~--~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD 169 (236)
T cd03253 93 YNIRYGRPDA--TD-EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALD 169 (236)
T ss_pred HHHhhcCCCC--CH-HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 1111111110 00 00111 11110 0111223442 458999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.....+.+++.+...+..+|++|++...+ .. .+|+..+
T Consensus 170 ~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~-~d~~~~l 208 (236)
T cd03253 170 THTEREIQAALRDVSKGRTTIVIAHRLSTI-VN-ADKIIVL 208 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence 999999999998876555677777777665 33 6777544
No 335
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.31 E-value=1.2e-11 Score=94.45 Aligned_cols=106 Identities=24% Similarity=0.376 Sum_probs=65.1
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHc-CCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV 113 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (248)
..++|.||+|+|||.+|+++|+.+. .....-+.++...+.. ..+.. ..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~-----------------------~~~~~--------~~ 52 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE-----------------------GDDVE--------SS 52 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS-----------------------HHHCS--------CH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc-----------------------cchHH--------hh
Confidence 3599999999999999999999886 4554444444433330 00000 00
Q ss_pred HHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------HHHHHHHHHHHHhc-----------CCeeEEEEecCCC
Q 025758 114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------EAQHSLRRTMEKYS-----------ASCRLILCCNSSS 171 (248)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~~~~~ll~~le~~~-----------~~~~~Il~t~~~~ 171 (248)
+..+....+... ...+..||+|||+|..++ ..++.|++++|+.. .++.||+++|-..
T Consensus 53 ~~~l~~~~~~~v-~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 53 VSKLLGSPPGYV-GAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CHHHHHHTTCHH-HHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhhhccccee-eccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 011100000000 011223999999999999 99999999998642 3456788877654
Q ss_pred c
Q 025758 172 K 172 (248)
Q Consensus 172 ~ 172 (248)
.
T Consensus 132 ~ 132 (171)
T PF07724_consen 132 E 132 (171)
T ss_dssp H
T ss_pred c
Confidence 3
No 336
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.30 E-value=1.6e-10 Score=106.73 Aligned_cols=206 Identities=19% Similarity=0.206 Sum_probs=122.0
Q ss_pred CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
.+|.+++|+....+.+...+.. ....+++|+|++|||||++|+++..........-+.+++.... . .
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~-------~----~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP-------A----G 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC-------h----h
Confidence 4678999988877776655442 2233599999999999999999987432223232333221110 0 0
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--------- 158 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--------- 158 (248)
.. .. .+.....+..... .......+. ..+...++|||++.|+...+..|++.+++..
T Consensus 442 ~~---~~-~lfg~~~~~~~g~-~~~~~g~le---------~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LL---ES-DLFGHERGAFTGA-SAQRIGRFE---------LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred Hh---hh-hhcCccccccccc-ccchhhHHH---------hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 00 00 0000000000000 000011111 1234689999999999999999999997632
Q ss_pred --CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHHH----cC--C-CCCHHHHHHHH
Q 025758 159 --ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAKK----EG--L-QLPSGFATRLA 218 (248)
Q Consensus 159 --~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~~----~~--~-~~~~~~~~~l~ 218 (248)
.++++|++|+... .+...+-.|. ..|.+||+.. +++..++...+.+ .+ + .++++++..+.
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS 587 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 2357888877653 2444455565 4577777753 4444444433322 22 2 47899999998
Q ss_pred HH-ccccHHHHHHHHHHHhhhcc
Q 025758 219 EK-SNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 219 ~~-~~g~~r~~~~~l~~~~~~~~ 240 (248)
.. ..||+|++.+.++.++....
T Consensus 588 ~y~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 588 NMEWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred hCCCCCcHHHHHHHHHHHHHhCC
Confidence 66 48999999999999986543
No 337
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.30 E-value=8.5e-12 Score=101.67 Aligned_cols=161 Identities=17% Similarity=0.247 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc-------C-------Ccccccce
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-------G-------SRNIDLEL 86 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~-------~-------~~~~~~~~ 86 (248)
+++.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++.... + ........
T Consensus 15 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 15 VLDGLNFSVAAGE--KVALIGPSGSGKSTILRILMT-LEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 3444444455443 367999999999999999998 66888999998886553110 0 00000000
Q ss_pred ee--------ecccceeeeCC-CCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEe
Q 025758 87 TT--------LSSANHVELSP-SDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLN 137 (248)
Q Consensus 87 ~~--------~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiD 137 (248)
.. .+..+++.+.. ...+... ...+.+.++.+ ....+..+|+ ..+|+++++|
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00 00000110000 0000000 01122222221 1122233442 4489999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhheee
Q 025758 138 EV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 138 E~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
|| ..||+.....+.+++.+..+ +..+|++|++... ...+.+|+.++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~ 221 (252)
T TIGR03005 172 EVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF-AREFADRVCFFD 221 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEEE
Confidence 99 79999999999999988743 4567777777654 446667775443
No 338
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.30 E-value=4e-12 Score=100.55 Aligned_cols=153 Identities=14% Similarity=0.215 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~ 92 (248)
+.+.+...+.+|. .+.+.||+|+||||+++++++ +..+..|.+.+++.......... .....+ ...+..
T Consensus 23 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (207)
T cd03369 23 VLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFR-FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR 99 (207)
T ss_pred cccCceEEECCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence 4555555555543 467999999999999999998 66788899988886432100000 000000 000111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
+++.+.. . .....+.+.++ .......+++ ..+|+++++||+ ..+|+.....+.+++.+...
T Consensus 100 ~~l~~~~---~-~~~~~~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 173 (207)
T cd03369 100 SNLDPFD---E-YSDEEIYGALR--VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT 173 (207)
T ss_pred HHhcccC---C-CCHHHHHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence 1111110 0 01111222222 1122233332 448999999999 89999999999999998765
Q ss_pred CeeEEEEecCCCcccHHHhhhhhee
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+..+|++|++...+. . .+|+..+
T Consensus 174 ~~tiii~th~~~~~~-~-~d~v~~l 196 (207)
T cd03369 174 NSTILTIAHRLRTII-D-YDKILVM 196 (207)
T ss_pred CCEEEEEeCCHHHHh-h-CCEEEEE
Confidence 567888888877653 3 4666444
No 339
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.30 E-value=3.8e-12 Score=104.54 Aligned_cols=160 Identities=15% Similarity=0.200 Sum_probs=91.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceeeecc--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSS-------- 91 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------- 91 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.+........ .....+.....
T Consensus 28 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 28 AVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAG-MIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred eeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 4555555565554 366999999999999999998 67888999999886543111000 00000000000
Q ss_pred --cceeeeCCC-CcCcch---hHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 92 --ANHVELSPS-DAGFQD---RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 92 --~~~~~~~~~-~~~~~~---~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
...+.+... ...... ...+.+.++.+. ...+..+|+ ..+|+++|+||| ..||+..
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 000000000 000000 011222332221 112233442 448999999999 8999999
Q ss_pred HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.++|.+..+ +..+|++||+... ...+.+|+..+
T Consensus 185 ~~~l~~~l~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l 223 (267)
T PRK15112 185 RSQLINLMLELQEKQGISYIYVTQHLGM-MKHISDQVLVM 223 (267)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhcCEEEEE
Confidence 9999999988743 4567777777654 45666777544
No 340
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.30 E-value=7.1e-12 Score=101.18 Aligned_cols=156 Identities=22% Similarity=0.306 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--------Ccccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--------SRNIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.+...... .......+...++.
T Consensus 17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 17 ILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQR-FYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 3344444444443 467999999999999999998 667888999888865421000 00000000001111
Q ss_pred ceeeeCCCCcCcchhHHHHHH---------HHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEV---------IKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+... ... ...+.+. +..+ .......+|+ ..+|+++++||| ..+|
T Consensus 94 ~nl~~~~~--~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD 170 (237)
T cd03252 94 DNIALADP--GMS-MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170 (237)
T ss_pred HHhhccCC--CCC-HHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 22222111 000 0011111 1110 1112334442 448999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.....+.+.+.+...+..+|++||+...+ . ..+|+..+
T Consensus 171 ~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~-~~d~v~~l 209 (237)
T cd03252 171 YESEHAIMRNMHDICAGRTVIIIAHRLSTV-K-NADRIIVM 209 (237)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-H-hCCEEEEE
Confidence 999999999999876556788888887765 3 35666433
No 341
>PHA02244 ATPase-like protein
Probab=99.30 E-value=7.6e-11 Score=98.95 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=82.2
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (248)
..+.+|+..+ .+++|+||+|||||++|+.+|..+..+ .+.+++. .......++....
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg~p---fv~In~l-----------------~d~~~L~G~i~~~- 166 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALDLD---FYFMNAI-----------------MDEFELKGFIDAN- 166 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhCCC---EEEEecC-----------------hHHHhhccccccc-
Confidence 3455666554 358899999999999999999865322 1111100 0000001111000
Q ss_pred CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCeeEEEEecCC-
Q 025758 103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------SASCRLILCCNSS- 170 (248)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~Il~t~~~- 170 (248)
+.. .....+..+ .+..+++|||++.+.+..+..|..+++.. +.+..+|+++|..
T Consensus 167 g~~---~dgpLl~A~-----------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~ 232 (383)
T PHA02244 167 GKF---HETPFYEAF-----------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG 232 (383)
T ss_pred ccc---cchHHHHHh-----------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc
Confidence 000 001112211 24569999999999999999999999631 2455788888863
Q ss_pred ----------CcccHHHhhhhheeeecCCCH
Q 025758 171 ----------SKVTEAIRSRCLNIRINSPTE 191 (248)
Q Consensus 171 ----------~~~~~~l~sR~~~i~~~~~~~ 191 (248)
..+.+++++|+..+.|+.|+.
T Consensus 233 ~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 233 KGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred cCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 467899999999999999874
No 342
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=1e-11 Score=100.07 Aligned_cols=159 Identities=17% Similarity=0.260 Sum_probs=88.4
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee------ecccce
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT------LSSANH 94 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~ 94 (248)
.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.+........ ...+..+. .+..++
T Consensus 15 l~~is~~i~~Ge--~~~i~G~nG~GKStLl~~l~G-~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 15 LKNVSLEVERGD--YFVILGPTGSGKSVLLETIAG-FIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 333444444432 477999999999999999998 67888999999886543111100 00000000 000011
Q ss_pred eeeCCCCcCcc---hhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758 95 VELSPSDAGFQ---DRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT 153 (248)
Q Consensus 95 ~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~ 153 (248)
+.+.....+.. ....+.+.++.+ ....+..+|+ ..+++++++||| ..||+..+..++++
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 171 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHH
Confidence 11000000000 001112222211 1222334442 458999999999 89999999999999
Q ss_pred HHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 154 le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+... ...+|++|++... .+.+.+|+..+
T Consensus 172 l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~l 203 (235)
T cd03299 172 LKKIRKEFGVTVLHVTHDFEE-AWALADKVAIM 203 (235)
T ss_pred HHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 988643 4567777776544 45666777443
No 343
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=5.7e-12 Score=103.65 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-Ccccccceeeec---------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTTLS--------- 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------- 90 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+.+|.+.++|..+..... .......+..-.
T Consensus 24 ~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 24 TLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIG-IEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 4444444454443 366999999999999999998 668889999998875431100 000000000000
Q ss_pred ccceeeeCCCCcCcchh---HHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
..+.+.+.....+.... ..+.+.++.+. ...+..+|+ ..+|+++++||| ..||+.....
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 180 (269)
T PRK13648 101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180 (269)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 00001111000011111 11222222221 122223442 458999999999 8999999999
Q ss_pred HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.+++.+... +..+|++|++...+. . .+|+.++
T Consensus 181 l~~~L~~~~~~~~~tiiivtH~~~~~~-~-~d~i~~l 215 (269)
T PRK13648 181 LLDLVRKVKSEHNITIISITHDLSEAM-E-ADHVIVM 215 (269)
T ss_pred HHHHHHHHHHhcCCEEEEEecCchHHh-c-CCEEEEE
Confidence 9999988643 467888888877654 3 6776443
No 344
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.8e-12 Score=103.78 Aligned_cols=162 Identities=13% Similarity=0.226 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----Ccccceecccceee--ccC-Ccccccce--ee
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKI--DAG-SRNIDLEL--TT 88 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~--~~~-~~~~~~~~--~~ 88 (248)
..+.+.+...+.+|. .+.|.||||+||||+++++++ +..+ .+|.+.++|.++.. ..+ .......+ +.
T Consensus 17 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (253)
T PRK14267 17 NHVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNR-LLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93 (253)
T ss_pred eeeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhc-cCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecC
Confidence 345555665565554 366999999999999999999 4444 48989888865431 000 00000000 00
Q ss_pred ------ecccceeeeCCCCcCc--ch---hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEE
Q 025758 89 ------LSSANHVELSPSDAGF--QD---RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVL 136 (248)
Q Consensus 89 ------~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viii 136 (248)
.++.+++.+.....+. .. ...+.+.++.+ .......+|+ ..+|+++++
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0111111110000000 00 01122222221 1112223332 458999999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 137 DE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
||| ..||+.....+.++|.+...+..+|++||+... ...+.+|+.++
T Consensus 174 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~-~~~~~d~i~~l 221 (253)
T PRK14267 174 DEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ-AARVSDYVAFL 221 (253)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH-HHhhCCEEEEE
Confidence 999 899999999999999987655667777777654 34666776444
No 345
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.4e-10 Score=107.72 Aligned_cols=197 Identities=18% Similarity=0.229 Sum_probs=126.1
Q ss_pred CCcccccccHHHHHHHHHHhh------------cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 10 KTLDQVIVHQDIAQNLKKLVT------------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~------------~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
.+|+++-|...++..|+..+- +=..|. ++|+||||||||..|+++|..+- ....++.....
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s-~~~~kisffmr----- 335 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACS-RGNRKISFFMR----- 335 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhc-ccccccchhhh-----
Confidence 578888888888888887652 111233 99999999999999999998541 11121111000
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-----------
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----------- 145 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----------- 145 (248)
+.. ..-+..+.+ .++.+..+-... ...+|.|++.||+|++.+.
T Consensus 336 -------------kga-----D~lskwvgE---aERqlrllFeeA-----~k~qPSIIffdeIdGlapvrSskqEqih~S 389 (1080)
T KOG0732|consen 336 -------------KGA-----DCLSKWVGE---AERQLRLLFEEA-----QKTQPSIIFFDEIDGLAPVRSSKQEQIHAS 389 (1080)
T ss_pred -------------cCc-----hhhccccCc---HHHHHHHHHHHH-----hccCceEEeccccccccccccchHHHhhhh
Confidence 000 000111111 233333222111 1457889999999988642
Q ss_pred HHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025758 146 AQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK 220 (248)
Q Consensus 146 ~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~ 220 (248)
....|+.++...... +.+|-+||.+..+.++++.+. ..+.|+.|+.+...+|+.-+-.+..=.++......+++.
T Consensus 390 IvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~ 469 (1080)
T KOG0732|consen 390 IVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEE 469 (1080)
T ss_pred HHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Confidence 234567777766444 456666889999999998766 579999999999999998765555556788899999988
Q ss_pred ccccHHHHHH-HHHHHhhh
Q 025758 221 SNRSLRRAIL-SFETCRVQ 238 (248)
Q Consensus 221 ~~g~~r~~~~-~l~~~~~~ 238 (248)
+.|-.+.-++ +...+++.
T Consensus 470 t~gy~gaDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 470 TSGYGGADLKALCTEAALI 488 (1080)
T ss_pred ccccchHHHHHHHHHHhhh
Confidence 8665544444 33444433
No 346
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.30 E-value=4.1e-12 Score=103.18 Aligned_cols=160 Identities=17% Similarity=0.236 Sum_probs=90.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-----cccceecccceeeccC---Ccccccceee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-----AEKVKVENKTWKIDAG---SRNIDLELTT---- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~---- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+. +|.+.++|.++..... .......+..
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 16 ALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNR-MNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhc-cCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 4555555555553 366999999999999999998 56666 8999998875531100 0000000000
Q ss_pred ---ecccceeeeCCCCcCc-ch---hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 ---LSSANHVELSPSDAGF-QD---RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.+..+++.+.....+. .. ...+.+.++.+ ....+..+|+ ..+|+++++|||
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 172 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0111111110000000 00 01122222221 1222334442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+++.+......+|++|++.. ....+.+|+..+
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~-~~~~~~d~i~~l 216 (247)
T TIGR00972 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQ-QAARISDRTAFF 216 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCeEEEEecCHH-HHHHhCCEEEEE
Confidence 79999999999999988765556777777655 444666777444
No 347
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=6.8e-12 Score=103.42 Aligned_cols=159 Identities=16% Similarity=0.223 Sum_probs=92.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--Ccccccceee---------e
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--SRNIDLELTT---------L 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~ 89 (248)
+++.+...+++|. .+.|.||||+||||+++++++ +..+..|.+.++|.++....+ .......+.. .
T Consensus 17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 17 ALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 4455555555553 366999999999999999998 678899999998875531110 0000000000 0
Q ss_pred cccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 90 SSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
+..+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+.
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 173 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11111111110001110 11122222221 1222334442 458999999999 899999999
Q ss_pred HHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 149 ~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+++.+.+... +..+|++||+...+ + ..+|+..+
T Consensus 174 ~l~~~l~~l~~~g~til~~tH~~~~~-~-~~d~v~~l 208 (274)
T PRK13644 174 AVLERIKKLHEKGKTIVYITHNLEEL-H-DADRIIVM 208 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence 99999988654 46788888887765 3 47777443
No 348
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.30 E-value=2.6e-12 Score=102.78 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=81.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh---HHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---YVVQE 112 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 112 (248)
.+.|.||||+||||+++++++ +..+.+|.+.+++....... ....+ ....++.+++.+.....+.... ....+
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~--~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAG-IYPPDSGTVTVRGRVSSLLG--LGGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDE 125 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEchhhc--ccccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 377999999999999999998 66888999988886432100 00000 0011111111111000000000 11122
Q ss_pred HHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcc
Q 025758 113 VIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKV 173 (248)
Q Consensus 113 ~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~ 173 (248)
.++.+ .......+|+ ..+|+++|+||| ..||+..+..+.+.+.+.... ..+|++|++.. .
T Consensus 126 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~ 204 (224)
T cd03220 126 IIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-S 204 (224)
T ss_pred HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H
Confidence 22211 1112223332 458999999999 799999999999999877444 55667766654 4
Q ss_pred cHHHhhhhhee
Q 025758 174 TEAIRSRCLNI 184 (248)
Q Consensus 174 ~~~l~sR~~~i 184 (248)
...+.+|+..+
T Consensus 205 ~~~~~d~i~~l 215 (224)
T cd03220 205 IKRLCDRALVL 215 (224)
T ss_pred HHHhCCEEEEE
Confidence 44556666444
No 349
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=9.1e-12 Score=107.22 Aligned_cols=146 Identities=16% Similarity=0.280 Sum_probs=85.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-------ccccceee------ecccceeeeCCCCc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-------NIDLELTT------LSSANHVELSPSDA 102 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~ 102 (248)
.+.|.||||+|||||++++++ +..+.+|.+.++|.++....+.. ...+-.+. .++.+++.+.....
T Consensus 56 i~~LvG~NGsGKSTLLr~I~G-l~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNR-LIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred EEEEECCCCchHHHHHHHHHc-CCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 378999999999999999998 77889999999887654211100 00000000 01111111111000
Q ss_pred Ccch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--
Q 025758 103 GFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-- 159 (248)
Q Consensus 103 ~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-- 159 (248)
+... ...+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+.....+.+.+.+...
T Consensus 135 ~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~ 214 (400)
T PRK10070 135 GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214 (400)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC
Confidence 1110 11122222222 2223344552 458999999999 89999999999999987642
Q ss_pred CeeEEEEecCCCcccHHHhhhhhe
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+..+|++||+.+.+ ..+.+|+.+
T Consensus 215 g~TIIivTHd~~~~-~~~~Dri~v 237 (400)
T PRK10070 215 QRTIVFISHDLDEA-MRIGDRIAI 237 (400)
T ss_pred CCeEEEEECCHHHH-HHhCCEEEE
Confidence 45677777776543 466677643
No 350
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.1e-11 Score=101.99 Aligned_cols=161 Identities=12% Similarity=0.165 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeec--cC-Ccccccceee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKID--AG-SRNIDLELTT---- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~---- 88 (248)
+++.+...+.+|. .+.|.||||+|||||++++++ +.. +..|.+.++|.++... .+ .......+..
T Consensus 28 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 28 AVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNR-MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-cccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 4445555555553 366999999999999999998 433 5788888888654210 00 0000000000
Q ss_pred ---ecccceeeeCCCCcCcch--hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758 89 ---LSSANHVELSPSDAGFQD--RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
.++.+++.+.....+... ...+.+.++.+ .......+|+ ..+|+++++||| ..
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 011111111111111110 11122223222 1122223442 458999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
||+.....+.+++.+......+|++||+.. ....+.+|..++.
T Consensus 185 LD~~~~~~l~~~l~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 185 LDPISTLKIEETMHELKKNFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 999999999999998755556777777754 4456667765554
No 351
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=5.3e-12 Score=102.68 Aligned_cols=161 Identities=18% Similarity=0.275 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccC--Ccccccceee----
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAG--SRNIDLELTT---- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~---- 88 (248)
.+.+.+...+.+|. .+.|.||||+||||+++++++ +..+ .+|.+.++|.+.....+ .......+..
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 17 QALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNR-MNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred eeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHh-hcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 34555555555553 366999999999999999999 4443 47888888764421000 0000000000
Q ss_pred ---ecccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 ---LSSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.++.+++.+.....+.... ..+.+.++.+ .......+|+ ..+|+++++|||
T Consensus 94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 173 (249)
T PRK14253 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173 (249)
T ss_pred cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0111111111000010000 0111112111 1122223442 448999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+++.+..+...+|++|++.. ....+.+|+.++
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~-~~~~~~d~i~~l 217 (249)
T PRK14253 174 SALDPIATHKIEELMEELKKNYTIVIVTHSMQ-QARRISDRTAFF 217 (249)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEE
Confidence 89999999999999998866666777777654 455667777443
No 352
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=4.7e-12 Score=103.64 Aligned_cols=161 Identities=11% Similarity=0.177 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeec-cCC-c-ccccce--ee-
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKID-AGS-R-NIDLEL--TT- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~-~~~-~-~~~~~~--~~- 88 (248)
.+++.+...+.+|. .+.|.||||+||||+++++++ +.. +..|.+.+++..+... ... . .....+ +.
T Consensus 27 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 27 HALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNR-MYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred EEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhc-ccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 34455555555543 366999999999999999998 443 4678898888654310 000 0 000000 00
Q ss_pred ----ecccceeeeCCCCc-Ccch---hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC
Q 025758 89 ----LSSANHVELSPSDA-GFQD---RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV 139 (248)
Q Consensus 89 ----~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~ 139 (248)
.+..+++.+..... +... ...+.+.++.+ .......+|+ ..+|+++++|||
T Consensus 104 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 183 (260)
T PRK10744 104 TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183 (260)
T ss_pred ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 01111111110000 1110 01122333322 1223334442 458999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 -d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+.....+++.+.+......+|++||+.. ....+.+|+..+
T Consensus 184 t~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 184 CSALDPISTGRIEELITELKQDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 89999999999999998755556777777754 445666776444
No 353
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.29 E-value=1.3e-11 Score=101.49 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC------cccccceee------e
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS------RNIDLELTT------L 89 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------~ 89 (248)
.+.+...+..|. .+.|.||||+||||+++++++ +..+..|.+.++|.++...... ....+-.+. .
T Consensus 23 l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 23 FDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGG-QIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 334444444442 477999999999999999998 6678899999888654311110 000000000 0
Q ss_pred cccceeeeCCCC-cCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 90 SSANHVELSPSD-AGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
+..+++.+.... ...... ..+.+.++.+ ....+..+|+ ..+|+++++||| ..||+...
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 001111110000 000000 0111122211 1112223442 458999999999 89999999
Q ss_pred HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..+.+.+.+..+ +..+|++||+...+ ..+.+|+..
T Consensus 180 ~~l~~~l~~~~~~~g~tiiivsH~~~~~-~~~~d~v~~ 216 (269)
T PRK11831 180 GVLVKLISELNSALGVTCVVVSHDVPEV-LSIADHAYI 216 (269)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHH-HHhhCEEEE
Confidence 999999988743 45677777775443 456666643
No 354
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=4.8e-12 Score=105.00 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=92.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----cc--cccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RN--IDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~----- 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.+....... .. ..+-++.
T Consensus 21 ~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 21 ALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 4455555555553 366999999999999999998 7788999999998765311000 00 0000000
Q ss_pred --ecccceeeeCCCCcCcchh---HHHHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 89 --LSSANHVELSPSDAGFQDR---YVVQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
.++.+.+.+.+...+.... ..+.+.++. +....+..+|+ ..+|+++++||| ..||+
T Consensus 98 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~ 177 (288)
T PRK13643 98 FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177 (288)
T ss_pred ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCH
Confidence 0111112111111111111 112222221 11222334442 448999999999 89999
Q ss_pred HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..+..+++++.+... +..+|++||+.. ....+.+|+.+
T Consensus 178 ~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~ 216 (288)
T PRK13643 178 KARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYL 216 (288)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999988754 456777777654 44466777743
No 355
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.29 E-value=1.4e-11 Score=98.42 Aligned_cols=159 Identities=15% Similarity=0.293 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc------ccccceee------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR------NIDLELTT------ 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------ 88 (248)
+.+.+...+.+|. .+.+.||||+||||+++++++ +..+.+|.+.++|.++....+.. ...+..+.
T Consensus 20 il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 20 VLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGG-LRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 4445555555543 467999999999999999998 66888999998887553111100 00000000
Q ss_pred ecccceeeeCCC-CcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 89 LSSANHVELSPS-DAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
.+..+.+.+... ...... ...+.+.++.+ ....+..+++ ..+|+++++||| ..||+..
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 000001110000 000000 01122222221 1122223332 458999999999 8999999
Q ss_pred HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+..+.+.+++... +..+|++|++.. +. .+.+|+.++
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l 214 (220)
T TIGR02982 177 GRDVVELMQKLAREQGCTILIVTHDNR-IL-DVADRIVHM 214 (220)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH-HH-hhCCEEEEE
Confidence 9999999988753 467888888864 43 566666444
No 356
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.29 E-value=7.4e-12 Score=100.34 Aligned_cols=159 Identities=18% Similarity=0.305 Sum_probs=90.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-c--ccccee-----eeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N--IDLELT-----TLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-----~~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++....... . ..+-.+ ..++.
T Consensus 29 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 105 (226)
T cd03248 29 VLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLEN-FYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQ 105 (226)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHH
Confidence 4455555555443 367999999999999999998 66888899988886543110000 0 000000 00111
Q ss_pred ceeeeCCCCcCcch-hHH-----HHHHHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 93 NHVELSPSDAGFQD-RYV-----VQEVIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 93 ~~~~~~~~~~~~~~-~~~-----~~~~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
+++.+......... ... +.+.++.+ .......+|+ ..+|+++++||| ..||+..
T Consensus 106 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 185 (226)
T cd03248 106 DNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185 (226)
T ss_pred HHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11221111100000 000 11112221 1112223342 458999999999 7999999
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+++.+...+..+|++|++...+ .. .+|+..+
T Consensus 186 ~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~i~~l 221 (226)
T cd03248 186 EQQVQQALYDWPERRTVLVIAHRLSTV-ER-ADQILVL 221 (226)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHH-Hh-CCEEEEe
Confidence 999999998876667788888887665 33 5665444
No 357
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3e-12 Score=104.41 Aligned_cols=162 Identities=16% Similarity=0.220 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccCC---cccccceee--
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAGS---RNIDLELTT-- 88 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~-- 88 (248)
..+.+.+...+..|. .+.|.||||+|||||++++++ +..+ ..|.+.++|..+...... ......+..
T Consensus 20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 96 (254)
T PRK14273 20 FKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNR-MNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT 96 (254)
T ss_pred ceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhc-cccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeec
Confidence 345556666666553 366999999999999999998 4444 478888888654310000 000000000
Q ss_pred -----ecccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeC
Q 025758 89 -----LSSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNE 138 (248)
Q Consensus 89 -----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE 138 (248)
.++.+++.+.....+... ...+.+.++.+ .......+|+ ..+|+++|+||
T Consensus 97 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 176 (254)
T PRK14273 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE 176 (254)
T ss_pred cccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111111111110001000 11122222221 1222334442 44899999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 139 ~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
| ..||+.....+.+++.+...+..+|++|++... ...+.+|+.++
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~-~~~~~d~i~~l 222 (254)
T PRK14273 177 PTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ-AGRISDRTAFF 222 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 9 899999999999999888655667777777654 44667777544
No 358
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=1.5e-11 Score=100.41 Aligned_cols=160 Identities=14% Similarity=0.192 Sum_probs=90.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccc--eee------ec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLE--LTT------LS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~------~~ 90 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. ...+. .+. .+
T Consensus 20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 20 AVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTG-FYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred EEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhC-CcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 4444444454443 477999999999999999998 66888999998886543111000 00000 000 01
Q ss_pred ccceeeeCC----------CCcC-----cc---hhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEE
Q 025758 91 SANHVELSP----------SDAG-----FQ---DRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLV 135 (248)
Q Consensus 91 ~~~~~~~~~----------~~~~-----~~---~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~vii 135 (248)
+.+++.+.. .... .. ....+.+.++. .....+..+|+ ..+|++++
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111111100 0000 00 00112222222 12223334442 45899999
Q ss_pred EeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 136 LNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 136 iDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+||| ..+|+.....+.++|.+..+ +..+|++||+.. ....+.+|+..+
T Consensus 177 lDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 227 (255)
T PRK11300 177 LDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVV 227 (255)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999 89999999999999988744 456777777655 444667777544
No 359
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.29 E-value=2.5e-10 Score=95.78 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=65.7
Q ss_pred CCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC-----------CeeEEEEecCC-------CcccHHHhhhhheeeecCC
Q 025758 128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-----------SCRLILCCNSS-------SKVTEAIRSRCLNIRINSP 189 (248)
Q Consensus 128 ~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~-----------~~~~Il~t~~~-------~~~~~~l~sR~~~i~~~~~ 189 (248)
..+..++-++|+...+....+.|+.++++..- +..||.+||.. .+..+++++||..+.++.+
T Consensus 234 ~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~ 313 (361)
T smart00763 234 RANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYC 313 (361)
T ss_pred cccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCc
Confidence 45667899999999999999999999986421 12244455544 2578999999998888776
Q ss_pred C-HHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Q 025758 190 T-EEQIVKVLEFIAKKE---GLQLPSGFATRLAEK 220 (248)
Q Consensus 190 ~-~~~~~~il~~~~~~~---~~~~~~~~~~~l~~~ 220 (248)
. ..+-.+|.++.+... +..+.+-+++.++..
T Consensus 314 l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 314 LRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 5 566777777776643 444566666665543
No 360
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3.7e-12 Score=104.84 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---ccccceeeec------
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTTLS------ 90 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------ 90 (248)
.+.+.+...+..|. .+.|.||||+||||+++++++ +..+..|.+.++|.++....... .....+....
T Consensus 15 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSG-LLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcC-CCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 34555555555553 367999999999999999998 67888999999887653110000 0000000000
Q ss_pred ---ccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 91 ---SANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 91 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
..+++.+.....+.... ..+.+.++.+ .......+|+ ..+|+++++||| ..||+..
T Consensus 92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~ 171 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171 (271)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 00011110000011110 1112222221 1222334442 458999999999 8999999
Q ss_pred HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+.+.+... +..+|++|++... ...+.+|+.++
T Consensus 172 ~~~l~~~l~~~~~~g~tii~vtH~~~~-~~~~~d~i~~l 209 (271)
T PRK13638 172 RTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVL 209 (271)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 9999999988743 4567777776554 45667777443
No 361
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.28 E-value=1.5e-12 Score=116.32 Aligned_cols=162 Identities=11% Similarity=0.199 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccce--e-----
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLEL--T----- 87 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~----- 87 (248)
+...+++.+...+..|. .+.|.||||+|||||++++++ +..+..|.+.++|..+....+.. .....+ +
T Consensus 22 ~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAG-IVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLF 98 (510)
T ss_pred CCceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccC
Confidence 33344555555565554 366999999999999999998 66788899988886543111000 000000 0
Q ss_pred -eecccceeeeCCCCcCcchhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 88 -TLSSANHVELSPSDAGFQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
..++.+++.+..... ......+.+.++.+. ......+|+ ..+|+++++||| ..||+....
T Consensus 99 ~~~tv~e~l~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~ 177 (510)
T PRK15439 99 PNLSVKENILFGLPKR-QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177 (510)
T ss_pred CCCcHHHHhhcccccc-hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 001111111111000 000111222222211 111223332 448999999999 899999999
Q ss_pred HHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758 149 SLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 149 ~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+.++|.+.... ..+|++||+... ...+.+|+.+
T Consensus 178 ~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~i~~ 212 (510)
T PRK15439 178 RLFSRIRELLAQGVGIVFISHKLPE-IRQLADRISV 212 (510)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 999999887443 456666666554 4467777643
No 362
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=1e-11 Score=102.49 Aligned_cols=159 Identities=15% Similarity=0.242 Sum_probs=90.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--e-------eec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--T-------TLS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-------~~~ 90 (248)
+++.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.++|..+....... ...... + ..+
T Consensus 19 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 19 ALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNG-ILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred eeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 4445555555543 367999999999999999998 67889999999886543111000 000000 0 001
Q ss_pred ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
+.+++.+.....+.... ..+.+.++. .....+..+|+ ..+|+++|+||| ..||+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11111111000011110 112222222 11223334442 458999999999 7999999999
Q ss_pred HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+++++.+... +..+|++|++.+. ...+.+|+.+
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~-~~~~~drv~~ 210 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYV 210 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence 9999987754 4567777777554 4457778743
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=3.3e-11 Score=91.07 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=76.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (248)
.+.|.||||+||||+++++++ +..+..|.+.+++........ ......+.+.+. .+..+..+-.+.
T Consensus 27 ~~~i~G~nGsGKStll~~l~g-~~~~~~G~i~~~~~~~~~~~~----------~~~~~~i~~~~q---lS~G~~~r~~l~ 92 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAG-LLKPTSGEILIDGKDIAKLPL----------EELRRRIGYVPQ---LSGGQRQRVALA 92 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCEEcccCCH----------HHHHhceEEEee---CCHHHHHHHHHH
Confidence 477999999999999999998 556788888888754331000 001112333332 222222222222
Q ss_pred HHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758 116 EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
... ..+++++++||| ..+|......+.+.+.+.... ..++++||+...+. .+.+++.
T Consensus 93 ~~l---------~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~~d~i~ 151 (157)
T cd00267 93 RAL---------LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE-LAADRVI 151 (157)
T ss_pred HHH---------hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEE
Confidence 221 125789999999 799999999999999876443 45677766654433 4444443
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=5.2e-12 Score=99.21 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=80.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee---eccCCcccccceeeecccceeeeCCCCcCcchh---HH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK---IDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---YV 109 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 109 (248)
.+-|.|+||+|||||.+++|+ +..|+.|.+.+.|+... ...+-+. ..+..+++.+...-.|.... ..
T Consensus 55 ~vGiiG~NGaGKSTLlkliaG-i~~Pt~G~v~v~G~v~~li~lg~Gf~p------elTGreNi~l~~~~~G~~~~ei~~~ 127 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAG-IYKPTSGKVKVTGKVAPLIELGAGFDP------ELTGRENIYLRGLILGLTRKEIDEK 127 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhC-ccCCCCceEEEcceEehhhhcccCCCc------ccchHHHHHHHHHHhCccHHHHHHH
Confidence 367999999999999999998 78999999999886332 0000000 00001111111111111110 11
Q ss_pred HHHHHHHHHhc---C-------CC--------cCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh-cCCeeEEEEecC
Q 025758 110 VQEVIKEMAKN---R-------PI--------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNS 169 (248)
Q Consensus 110 ~~~~~~~~~~~---~-------~~--------~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~-~~~~~~Il~t~~ 169 (248)
..+ +..+++. . +. +.+-..+|.++||||+ ..-|..-+..-.+.+++. .++..+|++||+
T Consensus 128 ~~e-IieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 128 VDE-IIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred HHH-HHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 111 1111111 1 10 1111458999999998 777888888888888877 555666666666
Q ss_pred CCcccHHHhhhhheee
Q 025758 170 SSKVTEAIRSRCLNIR 185 (248)
Q Consensus 170 ~~~~~~~l~sR~~~i~ 185 (248)
......+++|+..+.
T Consensus 207 -~~~I~~~Cd~~i~l~ 221 (249)
T COG1134 207 -LGAIKQYCDRAIWLE 221 (249)
T ss_pred -HHHHHHhcCeeEEEe
Confidence 445558888885443
No 365
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=8.3e-12 Score=103.33 Aligned_cols=159 Identities=14% Similarity=0.257 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCc---ccceecccceeeccCCc---ccccce-------e
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA---EKVKVENKTWKIDAGSR---NIDLEL-------T 87 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~-------~ 87 (248)
+.+.+...+..|. .+.|.||||+||||+++++++ +..+.. |.+.++|.++....... ...+-. .
T Consensus 22 ~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G-~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~ 98 (282)
T PRK13640 22 ALNDISFSIPRGS--WTALIGHNGSGKSTISKLING-LLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFV 98 (282)
T ss_pred ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-ccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhc
Confidence 4444444444443 367999999999999999999 555655 78888887553111000 000000 0
Q ss_pred eecccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 88 TLSSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
..++.+++.+.....+.... ..+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~ 178 (282)
T PRK13640 99 GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178 (282)
T ss_pred cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 11122222221111111111 1122222221 2223334442 458999999999 8999999
Q ss_pred HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+++.+... +..+|++|++...+ . +.+|+.++
T Consensus 179 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~-~~d~i~~l 216 (282)
T PRK13640 179 KEQILKLIRKLKKKNNLTVISITHDIDEA-N-MADQVLVL 216 (282)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence 9999999988743 46788888887765 3 57777443
No 366
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=2e-11 Score=103.58 Aligned_cols=204 Identities=18% Similarity=0.169 Sum_probs=124.9
Q ss_pred ccccccHHHHHHHHHHh----hcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc--cceecccceeeccCCcccccce
Q 025758 13 DQVIVHQDIAQNLKKLV----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNIDLEL 86 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~----~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 86 (248)
..+.|.+.-...+..|+ .......+.+.|.||+|||.+...+-..+.+.... .+.+++..+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~------------ 217 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT------------ 217 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc------------
Confidence 44566666555555554 33444459999999999999999777655443322 1222221110
Q ss_pred eeecccceeeeCC---CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-CC--
Q 025758 87 TTLSSANHVELSP---SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-AS-- 160 (248)
Q Consensus 87 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-~~-- 160 (248)
... .-+..+.. .+....+ +..+.+..+...... ....-|+++||.|+|....+..|+.+++.+. .+
T Consensus 218 -~~~-aiF~kI~~~~~q~~~s~~--~~~~~~~~~~~h~~q----~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr 289 (529)
T KOG2227|consen 218 -EAS-AIFKKIFSSLLQDLVSPG--TGMQHLEKFEKHTKQ----SKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSR 289 (529)
T ss_pred -chH-HHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHhc----ccceEEEEechhhHHhhcccceeeeehhcccCCcce
Confidence 000 00000000 0000000 012223333332221 2256799999999999888888888888652 22
Q ss_pred eeEEEEecCCC---cccHHHhhhh----heeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---ccccHHHHH
Q 025758 161 CRLILCCNSSS---KVTEAIRSRC----LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEK---SNRSLRRAI 229 (248)
Q Consensus 161 ~~~Il~t~~~~---~~~~~l~sR~----~~i~~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~l~~~---~~g~~r~~~ 229 (248)
...|.++|..+ .+++.|..|+ .++.|+||+.+++..|++.++..+..... +.+++.+++. ..||+|.|+
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 34455566653 6888888876 58999999999999999999988766533 4467777744 479999999
Q ss_pred HHHHHHh
Q 025758 230 LSFETCR 236 (248)
Q Consensus 230 ~~l~~~~ 236 (248)
.+++.+.
T Consensus 370 dv~R~ai 376 (529)
T KOG2227|consen 370 DVCRRAI 376 (529)
T ss_pred HHHHHHH
Confidence 9998443
No 367
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.8e-11 Score=110.42 Aligned_cols=129 Identities=21% Similarity=0.387 Sum_probs=90.4
Q ss_pred cccccHHHHHHHHHHhhcC-----C--CCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758 14 QVIVHQDIAQNLKKLVTEQ-----D--CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~~~-----~--~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (248)
.++||++++..+...+... + ... ++|.||.|+|||-+|+++|..++.....-++++...|..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---------- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---------- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh----------
Confidence 4689999999998887422 1 233 999999999999999999999988887777777754441
Q ss_pred eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-------
Q 025758 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------- 158 (248)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------- 158 (248)
+...++-.+...|... .. .+..... ...+.||++||+|..++..++.|++++++..
T Consensus 633 -----vskligsp~gyvG~e~---gg-~Lteavr--------rrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 633 -----VSKLIGSPPGYVGKEE---GG-QLTEAVK--------RRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred -----hhhccCCCcccccchh---HH-HHHHHHh--------cCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCc
Confidence 1111222222222222 12 2333333 3356799999999999999999999999753
Q ss_pred ----CCeeEEEEecC
Q 025758 159 ----ASCRLILCCNS 169 (248)
Q Consensus 159 ----~~~~~Il~t~~ 169 (248)
+|+.||+|+|.
T Consensus 696 ~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNV 710 (898)
T ss_pred EeeccceEEEEeccc
Confidence 45678888775
No 368
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.27 E-value=7.6e-12 Score=102.86 Aligned_cols=153 Identities=19% Similarity=0.274 Sum_probs=89.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-Cccccccee-------eeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELT-------TLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~ 92 (248)
+++.+...+.+|. .+.|.||+|+||||+++++++.+ . ..|.+.++|.++..... .......+. ..+..
T Consensus 19 ~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~ 94 (275)
T cd03289 19 VLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFR 94 (275)
T ss_pred ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHH
Confidence 4555565665554 36699999999999999999944 4 67999998865431100 000000000 00111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCCCc-----------CCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRPID-----------TKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++... +......+.+.++. .....+.. ++. ..+++++++||+ ..+|
T Consensus 95 ~nl~~~----~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD 170 (275)
T cd03289 95 KNLDPY----GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170 (275)
T ss_pred HHhhhc----cCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 111100 00111112222211 12222222 332 458999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+.....+.+.+.+...+..+|++|++.+.+. . .+|+.+
T Consensus 171 ~~~~~~l~~~l~~~~~~~tii~isH~~~~i~-~-~dri~v 208 (275)
T cd03289 171 PITYQVIRKTLKQAFADCTVILSEHRIEAML-E-CQRFLV 208 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-h-CCEEEE
Confidence 9999999999987665678889999886553 3 677743
No 369
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.27 E-value=2.9e-11 Score=98.97 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=79.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc-eeeccCCcccccceeeecccceeeeCCCCcCcchhH---HHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY---VVQ 111 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 111 (248)
.+.|.||||+||||+++++++ +..+..|.+.+++.. +....... ....+..+++.+.....+..... ...
T Consensus 52 ~~~liG~NGsGKSTLlk~L~G-l~~p~~G~I~~~g~~~~~~~~~~~-----~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 125 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGG-SLSPTVGKVDRNGEVSVIAISAGL-----SGQLTGIENIEFKMLCMGFKRKEIKAMTP 125 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEeEEecccCC-----CCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 378999999999999999998 668888988887742 11000000 00001111111100000111000 011
Q ss_pred HHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCc
Q 025758 112 EVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSK 172 (248)
Q Consensus 112 ~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~ 172 (248)
..++. ........+|+ ..+|+++++||| ..||+.....+++.+.+... +..+|++|++..
T Consensus 126 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~- 204 (264)
T PRK13546 126 KIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG- 204 (264)
T ss_pred HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-
Confidence 11111 11112223332 448899999999 79999999999999987744 345666666644
Q ss_pred ccHHHhhhhhee
Q 025758 173 VTEAIRSRCLNI 184 (248)
Q Consensus 173 ~~~~l~sR~~~i 184 (248)
..+.+.+|+..+
T Consensus 205 ~i~~~~d~i~~l 216 (264)
T PRK13546 205 QVRQFCTKIAWI 216 (264)
T ss_pred HHHHHcCEEEEE
Confidence 445667777443
No 370
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.27 E-value=2.3e-11 Score=99.38 Aligned_cols=161 Identities=13% Similarity=0.203 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc-c-cce-eeecccceeee
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-D-LEL-TTLSSANHVEL 97 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~ 97 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.+++..+......... . ... ........+.+
T Consensus 20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 20 VLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINF-LEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 3444444444443 467999999999999999998 6678889998888654310000000 0 000 00000001111
Q ss_pred CCCCcCc--------------------ch---hHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEE
Q 025758 98 SPSDAGF--------------------QD---RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVL 136 (248)
Q Consensus 98 ~~~~~~~--------------------~~---~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viii 136 (248)
.+..... .. ...+.++++.+. ......+|+ ..+|+++++
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111100 00 011222232221 111223332 458999999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758 137 NEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 137 DE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
||| ..||+.....+.+++.+... +..+|++||+.. ..+.+.+|+.++.
T Consensus 177 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 999 89999999999999988754 456677767654 4557778875543
No 371
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.27 E-value=2.3e-11 Score=95.55 Aligned_cols=161 Identities=19% Similarity=0.250 Sum_probs=94.7
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--Ccccccce---------
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--SRNIDLEL--------- 86 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------- 86 (248)
.+.+++.|...++.| .|+.++||||+|||||++.+++.. -+.++.+.+.|+.+..... +.++.+.+
T Consensus 43 gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~-~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~ 119 (257)
T COG1119 43 GKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEH-PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF 119 (257)
T ss_pred CEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhccc-CCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhc
Confidence 444566666666555 368899999999999999999854 6668888887776541111 00000000
Q ss_pred -------eeeccc--ceeeeCCCCcCcchhHHHHHHHHHHHhc-----CCCcCC-C-----------CCCeeEEEEeCC-
Q 025758 87 -------TTLSSA--NHVELSPSDAGFQDRYVVQEVIKEMAKN-----RPIDTK-G-----------KRGFKVLVLNEV- 139 (248)
Q Consensus 87 -------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~-----------~~~~~viiiDE~- 139 (248)
+.+..+ ..+++............+..+++.+... +-..+| + ..+|.++||||+
T Consensus 120 ~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~ 199 (257)
T COG1119 120 RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199 (257)
T ss_pred ccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence 000000 0011111111111112223333322211 111222 1 448999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC---CeeEEEEecCCCcccHHHhhhh
Q 025758 140 DKLSREAQHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~---~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
++||..+...|++.+++... ...+|++|++.+++++-+-.+.
T Consensus 200 ~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 99999999999999988643 3579999999999988774443
No 372
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.27 E-value=3.9e-12 Score=108.95 Aligned_cols=139 Identities=20% Similarity=0.318 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeC
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (248)
+.+++.+...++.|..- -+.||+||||||++|.+.+ +-.+.+|.+++||.++. .+..-.-..+++|.
T Consensus 349 ~pil~~isF~l~~G~~l--gIIGPSgSGKSTLaR~lvG-~w~p~~G~VRLDga~l~----------qWd~e~lG~hiGYL 415 (580)
T COG4618 349 KPILKGISFALQAGEAL--GIIGPSGSGKSTLARLLVG-IWPPTSGSVRLDGADLR----------QWDREQLGRHIGYL 415 (580)
T ss_pred CcceecceeEecCCceE--EEECCCCccHHHHHHHHHc-ccccCCCcEEecchhhh----------cCCHHHhccccCcC
Confidence 34666777777776544 4999999999999999998 77999999999997554 23333345678888
Q ss_pred CCCcCcchhHHHHHHHHHHHhc---------------------CCC-----------cCCC------------CCCeeEE
Q 025758 99 PSDAGFQDRYVVQEVIKEMAKN---------------------RPI-----------DTKG------------KRGFKVL 134 (248)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-----------~~~~------------~~~~~vi 134 (248)
|.+-...+.- +.+.+..+... .|. .+|+ -++|.++
T Consensus 416 PQdVeLF~GT-IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 416 PQDVELFDGT-IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred cccceecCCc-HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence 8766554332 22222222210 011 2221 4589999
Q ss_pred EEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCC
Q 025758 135 VLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS 171 (248)
Q Consensus 135 iiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~ 171 (248)
++||+ ..||.+...+|...|..... .+++|+++|.+.
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 99999 69999999999999977644 467888888865
No 373
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=8.1e-12 Score=102.70 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc----CCCcccceecccceeeccCC---cccccceeee---
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF----GPGAEKVKVENKTWKIDAGS---RNIDLELTTL--- 89 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--- 89 (248)
.+++.+...+.+|. .+.|.||||+||||+++++++.+. .+..|.+.++|.++...... ......+..-
T Consensus 35 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 35 RAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred eeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 34455555555543 367999999999999999999432 15788898888654311000 0000000000
Q ss_pred ----cccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 90 ----SSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 90 ----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
+..+++.+......... ...+.+.+..+ .......+|+ ..+|+++|+|||
T Consensus 113 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 192 (268)
T PRK14248 113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192 (268)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 00011110000000000 01112222111 1122333442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+++.+......+|++|++... ...+.+|+..+
T Consensus 193 ~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~-~~~~~d~v~~l 236 (268)
T PRK14248 193 SALDPISNAKIEELITELKEEYSIIIVTHNMQQ-ALRVSDRTAFF 236 (268)
T ss_pred cccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH-HHHhCCEEEEE
Confidence 899999999999999887555667777777554 44666776443
No 374
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=8e-12 Score=101.88 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc--C--CCcccceecccceeeccCC--c-ccccceeee---
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--G--PGAEKVKVENKTWKIDAGS--R-NIDLELTTL--- 89 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~--~--~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~--- 89 (248)
.+++.+...+.+|. .+.|.||||+||||+++++++.+. . +..|.+.++|.+....... . .....+..-
T Consensus 20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 20 QALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 34555555555553 367999999999999999998432 1 4678898888654310000 0 000000000
Q ss_pred ----cccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 90 ----SSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 90 ----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
+..+++.+.....+... ...+.+.++.+ .......+|+ ..+|+++++|||
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 01111111000000000 11112222221 1112233442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
..||+.....+.+.+.+...+..+|++||+... ...+.+|+..+.
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~-~~~~~d~v~~l~ 222 (253)
T PRK14242 178 SALDPIATQKIEELIHELKARYTIIIVTHNMQQ-AARVSDVTAFFY 222 (253)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH-HHHhCCEEEEEE
Confidence 899999999999999987555566777776554 446667775443
No 375
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.27 E-value=2.2e-11 Score=97.89 Aligned_cols=146 Identities=17% Similarity=0.241 Sum_probs=82.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCC----CcccceecccceeeccCCcccccceeeecc----------cceeeeCCCC
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGP----GAEKVKVENKTWKIDAGSRNIDLELTTLSS----------ANHVELSPSD 101 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 101 (248)
.+.|.||||+||||+++++++ +..+ .+|.+.++|.++... ...........-.. .+++.+....
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~G-l~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~ 91 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILG-LLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRS 91 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCcccCHHHHHHHHHHH
Confidence 377999999999999999998 5566 789999888755311 00000000000000 0000000000
Q ss_pred cCcch---hHHHHHHHHHHH--------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh
Q 025758 102 AGFQD---RYVVQEVIKEMA--------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 102 ~~~~~---~~~~~~~~~~~~--------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~ 157 (248)
.+... ...+.+.++.+. ......+|+ ..+|+++++||| ..||......+.+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~ 171 (230)
T TIGR02770 92 LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171 (230)
T ss_pred cCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 00000 111222232221 112223332 448899999999 799999999999999887
Q ss_pred cC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 158 SA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 158 ~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.. +..+|++|++.+ ....+.+|+..+
T Consensus 172 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l 199 (230)
T TIGR02770 172 RQLFGTGILLITHDLG-VVARIADEVAVM 199 (230)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 53 456777777655 455666777444
No 376
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=7.1e-12 Score=102.05 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeecc-C--Ccccccceee---
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDA-G--SRNIDLELTT--- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~--- 88 (248)
.+.+.+...+..|. .+.|.||||+||||+++++++ +.. +..|.+.++|.++.... . ..........
T Consensus 18 ~~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 18 EALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNR-MNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhh-ccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 34455555555543 367999999999999999999 444 36888888886543100 0 0000000000
Q ss_pred ----ecccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC
Q 025758 89 ----LSSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV 139 (248)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~ 139 (248)
.+..+++.+.....+.... ..+.+.++.+ .......+|+ ..+|+++++|||
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP 174 (251)
T PRK14251 95 TPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEP 174 (251)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 0111111110000000000 1112222221 1112223332 458999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 140 -d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
..||+.....+.+.+++......+|++|++... ...+.+|+..+.
T Consensus 175 ~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~-~~~~~d~i~~l~ 220 (251)
T PRK14251 175 TSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ-AGRISDQTAFLM 220 (251)
T ss_pred CccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH-HHhhcCEEEEEE
Confidence 899999999999999987655677777777654 345567775443
No 377
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=5.7e-12 Score=100.57 Aligned_cols=142 Identities=16% Similarity=0.272 Sum_probs=93.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHH---
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--- 113 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 113 (248)
.-++|++|+||||++++||+ +..++.|.+.++|..+.......+. -.....++|...+....+.++++..
T Consensus 27 TAlFG~SGsGKTslin~IaG-L~rPdeG~I~lngr~L~Ds~k~i~l------p~~~RriGYVFQDARLFpH~tVrgNL~Y 99 (352)
T COG4148 27 TALFGPSGSGKTSLINMIAG-LTRPDEGRIELNGRVLVDAEKGIFL------PPEKRRIGYVFQDARLFPHYTVRGNLRY 99 (352)
T ss_pred EEEecCCCCChhhHHHHHhc-cCCccccEEEECCEEeecccCCccc------ChhhheeeeEeeccccccceEEecchhh
Confidence 44999999999999999998 8899999999999866511111000 0001123333333332222221111
Q ss_pred ------------------HHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC--
Q 025758 114 ------------------IKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-- 160 (248)
Q Consensus 114 ------------------~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-- 160 (248)
+..+...+|..+|+ ...|.++++||+ ..+|......++..+|...+.
T Consensus 100 G~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~ 179 (352)
T COG4148 100 GMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179 (352)
T ss_pred hhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC
Confidence 33345556777774 347999999999 889999999999999988654
Q ss_pred eeEEEEecCCCcccHHHhhhhheeee
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRI 186 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~ 186 (248)
.+++..||...++. .+.+|..++.-
T Consensus 180 IPIlYVSHS~~Ev~-RLAd~vV~le~ 204 (352)
T COG4148 180 IPILYVSHSLDEVL-RLADRVVVLEN 204 (352)
T ss_pred CCEEEEecCHHHHH-hhhheEEEecC
Confidence 57888888776655 66677654433
No 378
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=7.2e-12 Score=103.93 Aligned_cols=160 Identities=18% Similarity=0.305 Sum_probs=92.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-----Cc--ccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-----SR--NIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~----- 88 (248)
+++.+...+.+|.. +.|.||||+|||||++++++ +..+.+|.+.++|.++..... .. ...+..+.
T Consensus 22 ~l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 22 GLDNISFELEEGSF--VALVGHTGSGKSTLMQHFNA-LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred ceeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 45555555665543 66999999999999999998 778899999999976531100 00 00000000
Q ss_pred --ecccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 89 --LSSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
.++.+++.+.....+.... ..+.+.++.+ .......+|+ ..+|+++++||| ..||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 0111111110000011000 1122222221 1122233442 448999999999 89999
Q ss_pred HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.....+.+++.+... +..+|++||+.+ ....+.+|+..+
T Consensus 179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l 218 (287)
T PRK13641 179 EGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVL 218 (287)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999998754 356666666644 444777887544
No 379
>PRK08116 hypothetical protein; Validated
Probab=99.26 E-value=2.5e-11 Score=99.37 Aligned_cols=155 Identities=17% Similarity=0.279 Sum_probs=87.6
Q ss_pred ccCCCCCcccccc---cHHHHHHHHHHhhc----C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 5 DKYRPKTLDQVIV---HQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 5 ~ky~p~~~~~lig---~~~~~~~l~~~~~~----~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
++|+-.||+++.. +..++.....++++ . ....++|+|++|+|||+||.+++..+.......+.+
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-------- 148 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-------- 148 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE--------
Confidence 4566678887753 33345555544432 1 223499999999999999999999874432110000
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC--CCCCHHHHHHHHHHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTM 154 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~--d~l~~~~~~~ll~~l 154 (248)
+....+................+.++.+ ...++|+|||+ +......+..|+.+|
T Consensus 149 -------------~~~~ll~~i~~~~~~~~~~~~~~~~~~l-----------~~~dlLviDDlg~e~~t~~~~~~l~~ii 204 (268)
T PRK08116 149 -------------NFPQLLNRIKSTYKSSGKEDENEIIRSL-----------VNADLLILDDLGAERDTEWAREKVYNII 204 (268)
T ss_pred -------------EHHHHHHHHHHHHhccccccHHHHHHHh-----------cCCCEEEEecccCCCCCHHHHHHHHHHH
Confidence 0000000000000000000111222222 24569999999 556677888899999
Q ss_pred HHh-cCCeeEEEEecCCCc-----ccHHHhhh----hheeeecCCCH
Q 025758 155 EKY-SASCRLILCCNSSSK-----VTEAIRSR----CLNIRINSPTE 191 (248)
Q Consensus 155 e~~-~~~~~~Il~t~~~~~-----~~~~l~sR----~~~i~~~~~~~ 191 (248)
+.. ..+..+|++||.+.. +...+.|| |..+.|..++.
T Consensus 205 n~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 205 DSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 865 344578888887753 34567788 45677776663
No 380
>PRK12377 putative replication protein; Provisional
Probab=99.26 E-value=8e-11 Score=94.93 Aligned_cols=152 Identities=16% Similarity=0.286 Sum_probs=85.9
Q ss_pred ccCCCCCccccc----ccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 5 DKYRPKTLDQVI----VHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 5 ~ky~p~~~~~li----g~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
.+|+..+|+++. |+..++.....++.. ....+++|+||+|||||++|.+++..+......
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~-------------- 131 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRS-------------- 131 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC--------------
Confidence 456777899886 344455555554432 223469999999999999999999987432211
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC--CCCCHHHHHHHHHHHHH
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTMEK 156 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~--d~l~~~~~~~ll~~le~ 156 (248)
+...+.++.+...... ........+.++. ....++|+|||+ ...+...+..|+.+++.
T Consensus 132 -------v~~i~~~~l~~~l~~~--~~~~~~~~~~l~~-----------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~ 191 (248)
T PRK12377 132 -------VIVVTVPDVMSRLHES--YDNGQSGEKFLQE-----------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDR 191 (248)
T ss_pred -------eEEEEHHHHHHHHHHH--HhccchHHHHHHH-----------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 0000000000000000 0000001111221 236679999999 45567788899999987
Q ss_pred hcC-CeeEEEEecCCCc-----ccHHHhhhhh-----eeeecCCC
Q 025758 157 YSA-SCRLILCCNSSSK-----VTEAIRSRCL-----NIRINSPT 190 (248)
Q Consensus 157 ~~~-~~~~Il~t~~~~~-----~~~~l~sR~~-----~i~~~~~~ 190 (248)
.-. ...+|++||.... +.+.+.||.. .|.|.-.+
T Consensus 192 R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 192 RTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred HHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 543 4678888887642 3345556652 35555433
No 381
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.9e-11 Score=98.19 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc--CCCcccceecccceeeccCCcccccceeee---------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTL--------- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 89 (248)
+++.+...+.+|. .+.|.||||+||||+++++++.+. .+..|.+.++|.++......... .....+
T Consensus 17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~-~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 17 ALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR-KNVGMVFQQPNVFVK 93 (246)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh-hhEEEEecCCccccc
Confidence 4445544455443 477999999999999999998432 35789999888765311100000 000000
Q ss_pred cccceeeeCCCCcCc-----chhHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758 90 SSANHVELSPSDAGF-----QDRYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (248)
+..+++.+.....+. .....+.+.++.+. ......+|+ ..+|+++++||| ..|
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 111111111000000 00011222222211 112223442 458999999999 899
Q ss_pred CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 143 ~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
|+.....+.+.+.+...+..+|++|++.+.+ ..+.+|+.++
T Consensus 174 D~~~~~~l~~~l~~~~~~~tiii~tH~~~~~-~~~~d~i~~l 214 (246)
T PRK14269 174 DPISSGVIEELLKELSHNLSMIMVTHNMQQG-KRVADYTAFF 214 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhhCcEEEEE
Confidence 9999999999998876556677777765544 4666776544
No 382
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.6e-10 Score=93.86 Aligned_cols=190 Identities=18% Similarity=0.310 Sum_probs=112.0
Q ss_pred cccHHHHHHHHHHh-------h----cCC----CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 16 IVHQDIAQNLKKLV-------T----EQD----CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 16 ig~~~~~~~l~~~~-------~----~~~----~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+||+.+++.|.-.+ . +.. -.++++.||+|||||.||+.+|+.+.-| |+ ....
T Consensus 64 IGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVP-----------Fa--iADA 130 (408)
T COG1219 64 IGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVP-----------FA--IADA 130 (408)
T ss_pred ecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCC-----------ee--eccc
Confidence 68888777654322 1 111 1259999999999999999999976322 21 0000
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------------HHH
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------------REA 146 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------------~~~ 146 (248)
. ++ -.-+|. +++++.++..+.....+... +.+..+++|||+|.+. ...
T Consensus 131 T------tL---TEAGYV--------GEDVENillkLlqaadydV~-rAerGIIyIDEIDKIarkSeN~SITRDVSGEGV 192 (408)
T COG1219 131 T------TL---TEAGYV--------GEDVENILLKLLQAADYDVE-RAERGIIYIDEIDKIARKSENPSITRDVSGEGV 192 (408)
T ss_pred c------ch---hhcccc--------chhHHHHHHHHHHHcccCHH-HHhCCeEEEechhhhhccCCCCCcccccCchHH
Confidence 0 00 001222 23466666665554433222 4466799999999873 356
Q ss_pred HHHHHHHHHHh-----cCCee--------------EEEEecCC-------------------------------------
Q 025758 147 QHSLRRTMEKY-----SASCR--------------LILCCNSS------------------------------------- 170 (248)
Q Consensus 147 ~~~ll~~le~~-----~~~~~--------------~Il~t~~~------------------------------------- 170 (248)
|.+|+|++|.. ++.++ ++|++.--
T Consensus 193 QQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~ 272 (408)
T COG1219 193 QQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLK 272 (408)
T ss_pred HHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHH
Confidence 89999999853 11111 33333211
Q ss_pred ---------CcccHHHhhhh-heeeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---ccc
Q 025758 171 ---------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS---NRS 224 (248)
Q Consensus 171 ---------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~-----------~~~~~~~--~~~~~~~~~l~~~~---~g~ 224 (248)
..+.|.+..|. .+..+..++.+.+..||.. .++-+++ .++++++..+++.+ ...
T Consensus 273 ~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTG 352 (408)
T COG1219 273 QVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTG 352 (408)
T ss_pred hcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccc
Confidence 12555666777 4677889999999888864 1222344 47799999998665 122
Q ss_pred HHHHHHHHHHHh
Q 025758 225 LRRAILSFETCR 236 (248)
Q Consensus 225 ~r~~~~~l~~~~ 236 (248)
+|.+-.+++.+.
T Consensus 353 ARGLRsI~E~~l 364 (408)
T COG1219 353 ARGLRSIIEELL 364 (408)
T ss_pred hhHHHHHHHHHH
Confidence 555555555444
No 383
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.26 E-value=7.5e-10 Score=100.14 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=46.3
Q ss_pred CCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
-.|..+++++||+++++.|...+..+ .+++|+||||+||||++++++..+.+
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 35889999999999999999988876 37999999999999999999997644
No 384
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.26 E-value=5.7e-10 Score=101.06 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=74.1
Q ss_pred CCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------------------CCeeEEEEecCC--CcccHHHhhhhh---
Q 025758 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------------------ASCRLILCCNSS--SKVTEAIRSRCL--- 182 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------------------~~~~~Il~t~~~--~~~~~~l~sR~~--- 182 (248)
.+..+++|||++.|++..+..|++.+++.. .+.++|++++.. ..+.+++++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 356789999999999999999999997531 134577777654 478899999986
Q ss_pred -eeeecC---CCHHHHHH---HHHHHHHHcC-C-CCCHHHHHHHHHHcc----------ccHHHHHHHHHHHhh
Q 025758 183 -NIRINS---PTEEQIVK---VLEFIAKKEG-L-QLPSGFATRLAEKSN----------RSLRRAILSFETCRV 237 (248)
Q Consensus 183 -~i~~~~---~~~~~~~~---il~~~~~~~~-~-~~~~~~~~~l~~~~~----------g~~r~~~~~l~~~~~ 237 (248)
.+.|+. .+.+...+ .+...+.+.| + .++++.++.+++.+. .+.|++-++++.+..
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~ 369 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGD 369 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHH
Confidence 244432 34444443 4444444442 3 478999999985432 347888888877743
No 385
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.26 E-value=3.4e-11 Score=97.96 Aligned_cols=154 Identities=19% Similarity=0.294 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc-eeeccCCcccccceeeecccceeeeCCC
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
.+.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.+++.. +.+..........+. .....++.+.+
T Consensus 20 l~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~G-l~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~-~~~~~~~~~~~- 94 (251)
T PRK09544 20 LSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLG-LVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP-LTVNRFLRLRP- 94 (251)
T ss_pred EEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCccCEEEeccccccccccC-hhHHHHHhccc-
Confidence 333344444443 367999999999999999998 668888888776531 111111000000000 00011111110
Q ss_pred CcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--C
Q 025758 101 DAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S 160 (248)
Q Consensus 101 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~ 160 (248)
+. ....+.+.++.+ .......+|+ ..+|+++++||| ..+|+.....+.+.+.+... +
T Consensus 95 --~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g 171 (251)
T PRK09544 95 --GT-KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD 171 (251)
T ss_pred --cc-cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence 00 011122223221 1222333442 458899999999 89999999999999987643 4
Q ss_pred eeEEEEecCCCcccHHHhhhhhee
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|++|++.. ....+.+|+..+
T Consensus 172 ~tiiivsH~~~-~i~~~~d~i~~l 194 (251)
T PRK09544 172 CAVLMVSHDLH-LVMAKTDEVLCL 194 (251)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEE
Confidence 56777777755 444566776443
No 386
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.26 E-value=5e-11 Score=104.87 Aligned_cols=168 Identities=19% Similarity=0.247 Sum_probs=101.0
Q ss_pred CCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (248)
.+|.+++|+..+++.+...+..+ .+++|+||||+|||++++.+++ +..+..+...++...+...++....
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~g-llpp~~g~e~le~~~i~s~~g~~~~------- 257 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRING-LLPDLSNEEALESAAILSLVNAESV------- 257 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhc-cCCCCCCcEEEecchhhhhhccccc-------
Confidence 47888899999999887776554 4699999999999999999998 6677766665555433211111100
Q ss_pred cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------
Q 025758 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------- 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----------- 158 (248)
...+ ...+........+....+.--....+..+ ...+..+++|||++.+++..+..|++.+|+..
T Consensus 258 --~~~~-~~rPfr~ph~~~s~~~l~GGg~~~~pG~l-~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~ 333 (506)
T PRK09862 258 --QKQW-RQRPFRSPHHSASLTAMVGGGAIPGPGEI-SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333 (506)
T ss_pred --cCCc-CCCCccCCCccchHHHHhCCCceehhhHh-hhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCccee
Confidence 0000 00111111111111111110000111111 13455699999999999999999999997642
Q ss_pred --CCeeEEEEecCCC---------------------cccHHHhhhh-heeeecCCCH
Q 025758 159 --ASCRLILCCNSSS---------------------KVTEAIRSRC-LNIRINSPTE 191 (248)
Q Consensus 159 --~~~~~Il~t~~~~---------------------~~~~~l~sR~-~~i~~~~~~~ 191 (248)
.+..+|.++|... .+..++.+|+ ..+.+++++.
T Consensus 334 ~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~ 390 (506)
T PRK09862 334 YPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390 (506)
T ss_pred ccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence 2234666666542 3677999999 4677777643
No 387
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.6e-11 Score=99.98 Aligned_cols=160 Identities=15% Similarity=0.206 Sum_probs=89.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccCCc---ccccceee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAGSR---NIDLELTT---- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~---- 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+ .+|.+.++|.++....... .....+..
T Consensus 19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 19 ALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNR-MNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHh-ccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 4445555555443 367999999999999999998 4332 6788888887553111000 00000000
Q ss_pred ---ecccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 ---LSSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.+..+++.+.....+... ...+.+.++.+ .......+|+ ..+++++++|||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 011111111110001000 01112222222 1222333442 448999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+.....+.+++.+......+|++|++.. ....+.+|+.++
T Consensus 176 ~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~-~~~~~~d~v~~l 219 (251)
T PRK14270 176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQ-QASRVSDYTAFF 219 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHH-HHHHhcCEEEEE
Confidence 89999999999999988765566777777654 445667787544
No 388
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=3.6e-11 Score=97.97 Aligned_cols=160 Identities=14% Similarity=0.216 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC--C---CcccceecccceeeccCCc---ccccceee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG--P---GAEKVKVENKTWKIDAGSR---NIDLELTT---- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~--~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~---- 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +.. + .+|.+.++|.......... ........
T Consensus 19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 19 AVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINR-MHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHh-cccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 4445554555443 377999999999999999999 433 2 4788888886543110000 00000000
Q ss_pred ----ecccceeeeCCCCcCcch----hHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC
Q 025758 89 ----LSSANHVELSPSDAGFQD----RYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV 139 (248)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~ 139 (248)
.+..+++.+.....+... ...+.+.++.+. ......+|+ ..+|+++++|||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 000111111000001000 011222222221 112223442 458999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 -d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+.+++......+|++||+.. ....+.+|+..+
T Consensus 176 ~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~-~~~~~~d~i~~l 220 (252)
T PRK14256 176 ASALDPISTLKIEELIEELKEKYTIIIVTHNMQ-QAARVSDYTAFF 220 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCcEEEEECCHH-HHHhhCCEEEEE
Confidence 89999999999999998866666777777655 444677777544
No 389
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1e-11 Score=103.19 Aligned_cols=160 Identities=16% Similarity=0.263 Sum_probs=93.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc-C----C--cccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-G----S--RNIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~-~----~--~~~~~~~~~----- 88 (248)
+++.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.++|+++.... . . ....+-++.
T Consensus 22 ~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 22 ALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNG-LLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 4455555555554 366999999999999999998 67888999999987553100 0 0 000000100
Q ss_pred --ecccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 89 --LSSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
.++.+++.+.....+.... ..+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 0111112111111111111 1122222221 1122333442 458999999999 89999
Q ss_pred HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 145 ~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.....+++++.+... +..+|++|++.+. ...+.+|+.++
T Consensus 179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~-~~~~~drv~~l 219 (290)
T PRK13634 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMED-AARYADQIVVM 219 (290)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 999999999988753 4567777777654 44667887544
No 390
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=8.3e-12 Score=104.25 Aligned_cols=159 Identities=16% Similarity=0.218 Sum_probs=89.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc-----------------------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA----------------------- 77 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~----------------------- 77 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+..|.+.+++.......
T Consensus 22 ~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (305)
T PRK13651 22 ALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNA-LLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIK 98 (305)
T ss_pred ceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCCcEEEEeceecccccccccccccccccccccccccccc
Confidence 4445555555543 467999999999999999999 67888899988765331000
Q ss_pred --CCcc--cccceee-------ecccceeeeCCCCcCcchhH---HHHHHHHH------HHhcCCCcCCC----------
Q 025758 78 --GSRN--IDLELTT-------LSSANHVELSPSDAGFQDRY---VVQEVIKE------MAKNRPIDTKG---------- 127 (248)
Q Consensus 78 --~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~---------- 127 (248)
.... ..+-++. .++.+++.+.....+..... .+.+.++. .....+..+|+
T Consensus 99 ~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~ 178 (305)
T PRK13651 99 KIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG 178 (305)
T ss_pred hHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 0000 0000000 01111111111111111111 12222222 11223334442
Q ss_pred --CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 128 --KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 128 --~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..+|+++|+||| ..||+.....+++++.+... +..+|++|++.+.+. .+.+|+.+
T Consensus 179 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~-~~adrv~v 237 (305)
T PRK13651 179 ILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL-EWTKRTIF 237 (305)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHH-HhCCEEEE
Confidence 448999999999 89999999999999988754 456777777755444 66677743
No 391
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=1e-11 Score=100.57 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=104.6
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee-----------ccCCcccccce-e
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-----------DAGSRNIDLEL-T 87 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~ 87 (248)
.+++.++-.++.|.+-+ +.|.+|+|||||+|++-. |..|++|.+-++|.++.. ..+..+.-+.+ .
T Consensus 20 ~al~~vsL~I~~GeI~G--IIG~SGAGKSTLiR~iN~-Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs 96 (339)
T COG1135 20 TALDDVSLEIPKGEIFG--IIGYSGAGKSTLLRLINL-LERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96 (339)
T ss_pred eeeccceEEEcCCcEEE--EEcCCCCcHHHHHHHHhc-cCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence 34555666666666555 999999999999999997 999999999999965431 11111111111 1
Q ss_pred eecccceeeeCCCCcCcchhH---HHHHHHH-----HHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 88 TLSSANHVELSPSDAGFQDRY---VVQEVIK-----EMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
...+.+++.|..+-.+.+..+ .+.++++ .-...+|.++|+ ..+|+|++-||+ ..|||..
T Consensus 97 srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 97 SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 122344455554444433222 2333332 234556777875 458999999999 8999999
Q ss_pred HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
-..++.++.+... +.+++++||+ .++...+++|+.
T Consensus 177 T~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVa 213 (339)
T COG1135 177 TQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVA 213 (339)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhhe
Confidence 9998888887643 3467777655 677779999974
No 392
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.8e-12 Score=104.67 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--Ccccccceeee---------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--SRNIDLELTTL--------- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------- 89 (248)
+++.+...+..|. .+.|.||||+||||+++++++ +..+..|.+.++|..+..... .......+..-
T Consensus 25 vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 25 ALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNA-LLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 5555555555553 366999999999999999998 668889999998875531100 00000000000
Q ss_pred cccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 90 SSANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
...+.+.+.....+.... ..+.++++. .....+..+|+ ..+|+++++||| ..||+..+.
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 011111111111111111 112222222 12223334442 458999999999 899999999
Q ss_pred HHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 149 ~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+.+.+.+..+ +..+|++|++.+.+. . .+|+.++
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~-~-~d~v~~l 217 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAV-E-ADRIIVM 217 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHh-c-CCEEEEE
Confidence 99999998743 467888888877653 3 6777443
No 393
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.25 E-value=5.6e-11 Score=95.60 Aligned_cols=154 Identities=16% Similarity=0.265 Sum_probs=86.9
Q ss_pred cccCCCCCcccccc----cHHHHHHHHHHhhcC--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758 4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (248)
Q Consensus 4 ~~ky~p~~~~~lig----~~~~~~~l~~~~~~~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~ 77 (248)
.++|++.+|+++.. +..++..+..++.+- ...+++|+|++|+|||+++.+++.++...... +
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~-v----------- 130 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKS-V----------- 130 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCe-E-----------
Confidence 36788999999963 445667777766532 22469999999999999999999987432211 0
Q ss_pred CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHH
Q 025758 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTME 155 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le 155 (248)
-.++..+.+........ ....+..+.++.+ ...++|+|||++... ......|+.+++
T Consensus 131 ---------~~it~~~l~~~l~~~~~-~~~~~~~~~l~~l-----------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~ 189 (244)
T PRK07952 131 ---------LIITVADIMSAMKDTFS-NSETSEEQLLNDL-----------SNVDLLVIDEIGVQTESRYEKVIINQIVD 189 (244)
T ss_pred ---------EEEEHHHHHHHHHHHHh-hccccHHHHHHHh-----------ccCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 00000000000000000 0000111222221 256799999996543 345567888887
Q ss_pred Hh-cCCeeEEEEecCCCc-----ccHHHhhhh-----heeeecCCC
Q 025758 156 KY-SASCRLILCCNSSSK-----VTEAIRSRC-----LNIRINSPT 190 (248)
Q Consensus 156 ~~-~~~~~~Il~t~~~~~-----~~~~l~sR~-----~~i~~~~~~ 190 (248)
.. .....+|++||.... +.+.+.||+ ..+.|.-.+
T Consensus 190 ~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 190 RRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred HHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence 54 335678888887642 344555665 256665433
No 394
>PLN03211 ABC transporter G-25; Provisional
Probab=99.25 E-value=1.7e-11 Score=112.12 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC--cccceecccceeeccCC----cccccc-eeeecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGS----RNIDLE-LTTLSSAN 93 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~--~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~ 93 (248)
+++.+...+++|+. +.|.||||+|||||++++++. ..+. .|.+.++|.+....... ...... ....++.+
T Consensus 83 iL~~vs~~i~~Ge~--~aI~GpnGaGKSTLL~iLaG~-~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 83 ILNGVTGMASPGEI--LAVLGPSGSGKSTLLNALAGR-IQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred eeeCCEEEEECCEE--EEEECCCCCCHHHHHHHHhCC-CCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 34444444444433 669999999999999999984 4443 78899988754211000 000000 01112222
Q ss_pred eeeeCCCC---cCcchh---HHHHHHHHHHH--hc--------CCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 94 HVELSPSD---AGFQDR---YVVQEVIKEMA--KN--------RPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 94 ~~~~~~~~---~~~~~~---~~~~~~~~~~~--~~--------~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
.+.+.... ...... ..+.+.++.+. .. ....+|+ ..+|+++++||| .+||.
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 22221100 001111 11233333221 10 1113442 347999999999 89999
Q ss_pred HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhh
Q 025758 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
.....+.+++.+..+ +..+|+++|+++.....+.+|+
T Consensus 240 ~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~i 277 (659)
T PLN03211 240 TAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSV 277 (659)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceE
Confidence 999999999988753 4578888888774344555665
No 395
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.25 E-value=9.2e-12 Score=101.18 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee------eecccc
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT------TLSSAN 93 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~ 93 (248)
+.+...+..|. .+.|.||||+||||+++++++ +. +.+|.+.++|..+....+. ....+-.+ ..+..+
T Consensus 13 ~~vsl~i~~Ge--i~~l~G~nGsGKSTLl~~l~G-l~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 13 GPLSAEVRAGE--ILHLVGPNGAGKSTLLARMAG-LL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred cceEEEEcCCC--EEEEECCCCCCHHHHHHHHcC-CC-CCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 33333444443 367999999999999999998 44 4578888888654311100 00000000 001111
Q ss_pred eeeeCCCCcCcc--hhHHHHHHHHHH-----HhcCCCcCCC------------CC-------CeeEEEEeCC-CCCCHHH
Q 025758 94 HVELSPSDAGFQ--DRYVVQEVIKEM-----AKNRPIDTKG------------KR-------GFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 94 ~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~------------~~-------~~~viiiDE~-d~l~~~~ 146 (248)
++.+........ ....+.+.++.+ .......+|+ .. +++++++||| ..||+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 121111100000 011223333222 1122223332 22 5699999999 8999999
Q ss_pred HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+.+++.+... +..+|++|++... ...+.+|+.++
T Consensus 169 ~~~l~~~L~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l 206 (248)
T PRK03695 169 QAALDRLLSELCQQGIAVVMSSHDLNH-TLRHADRVWLL 206 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 9999999988753 4567777777554 44677777444
No 396
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=4.1e-11 Score=97.51 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=88.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccC---Ccccccceee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAG---SRNIDLELTT---- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +.. +.+|.+.++|.+...... .......+..
T Consensus 18 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-l~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 18 AVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINR-MNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred eEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhc-cccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 4455555555553 367999999999999999998 444 267888888865431000 0000000000
Q ss_pred ---ecccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 ---LSSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.+..+++.+.....+... ...+.+.++.+ .......+|+ ..+++++++|||
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 011111111000000000 00111222211 1122223332 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||......+.+++.+......+|++||+... ...+.+|+..+
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~-~~~~~d~i~~l 218 (250)
T PRK14262 175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQ-AIRIADYIAFM 218 (250)
T ss_pred cccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhCCEEEEE
Confidence 899999999999999887655667777777554 44666776443
No 397
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.25 E-value=9.2e-12 Score=113.76 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
.+++.++-.+++|.. +.+.|++||||||+++.+.+ +..|..|.+.++|.+...-... ...+.+++.+
T Consensus 487 ~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~g-ly~p~~G~I~~dg~dl~~i~~~----------~lR~~ig~V~ 553 (709)
T COG2274 487 PVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLG-LYKPQQGRILLDGVDLNDIDLA----------SLRRQVGYVL 553 (709)
T ss_pred chhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEeHHhcCHH----------HHHhheeEEc
Confidence 466666666666543 66999999999999999998 8899999999999766522211 1122233333
Q ss_pred CCcCcc---------------hhHHHHHHHH-----HHHh-----------cCCCcCCC------------CCCeeEEEE
Q 025758 100 SDAGFQ---------------DRYVVQEVIK-----EMAK-----------NRPIDTKG------------KRGFKVLVL 136 (248)
Q Consensus 100 ~~~~~~---------------~~~~~~~~~~-----~~~~-----------~~~~~~~~------------~~~~~viii 136 (248)
.+.-.. ..+.+.+.+. .+.. ....++|+ ..+|+|+++
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 322110 0011111111 1111 11113332 458999999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758 137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (248)
Q Consensus 137 DE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~ 173 (248)
||+ ..+|+.....+...+.+...+.++|+++|++..+
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti 671 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI 671 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh
Confidence 999 8999999999999999988888999999997543
No 398
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.6e-11 Score=101.39 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=91.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee-------eec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT-------TLS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~ 90 (248)
+++.+...+.+|. .+.|.|+||+||||+++++++ +..+.+|.+.++|......... ....+-.+ ..+
T Consensus 22 ~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 22 QLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDG-LFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence 4445555555553 367999999999999999998 6688999999988654311000 00000000 001
Q ss_pred ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758 91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS 149 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ 149 (248)
+.+++.+.....+.... ..+.+.++. .....+..+|+ ..+|+++|+||| ..||+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~ 178 (277)
T PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178 (277)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11111111100011110 011222221 22223334442 448999999999 8999999999
Q ss_pred HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+++++.+... +..+|++|++...+. ..+|+.+
T Consensus 179 l~~~l~~l~~~~g~tiil~sH~~~~~~--~~d~i~~ 212 (277)
T PRK13642 179 IMRVIHEIKEKYQLTVLSITHDLDEAA--SSDRILV 212 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHH--hCCEEEE
Confidence 9999988754 467888888877763 3677643
No 399
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.9e-11 Score=100.65 Aligned_cols=160 Identities=15% Similarity=0.226 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccC---Ccccccceee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAG---SRNIDLELTT---- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---- 88 (248)
+.+.+...+.+|. .+.|.|+||+||||++++|++. .. +..|.+.++|.++..... .......+..
T Consensus 39 il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 39 ALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRM-VELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhh-ccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 3444444444443 3679999999999999999994 44 478889888865421000 0000000000
Q ss_pred ---ecccceeeeCCCCcCcchhHH----HHHHHHH---------HHhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 ---LSSANHVELSPSDAGFQDRYV----VQEVIKE---------MAKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.+..+++.+.....+...... +.+.++. .....+..+|+ ..+++++++|||
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 011111111000000000001 1111111 11223334442 448999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+++.+...+..+|++|++... ...+.+|+..+
T Consensus 196 ~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~-i~~~~d~i~~l 239 (271)
T PRK14238 196 SALDPISTLKVEELVQELKKDYSIIIVTHNMQQ-AARISDKTAFF 239 (271)
T ss_pred CcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH-HHHhCCEEEEE
Confidence 899999999999999887665667777776554 44666776443
No 400
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.6e-11 Score=99.92 Aligned_cols=162 Identities=15% Similarity=0.245 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-C---Ccccceecccceeecc-C--Ccccccce--ee--
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-P---GAEKVKVENKTWKIDA-G--SRNIDLEL--TT-- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-~---~~~~~~~~~~~~~~~~-~--~~~~~~~~--~~-- 88 (248)
.+++.+...+.+|. .+.|.||||+||||+++++++.+.. + .+|.+.++|.+..... + .......+ +.
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 17 QALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 34455555555553 3679999999999999999984321 2 5788988886543100 0 00000000 00
Q ss_pred ---ecccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 ---LSSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.+..+++.+.....+... ...+.+.++.+ .......+|+ ..+|+++++|||
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 011111111100001000 01111212211 1122234442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+++.+......+|++|++.. ....+.+|+..+
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~v~~l 218 (250)
T PRK14240 175 SALDPISTLKIEELIQELKKDYTIVIVTHNMQ-QASRISDKTAFF 218 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH-HHHhhCCEEEEE
Confidence 89999999999999988765566777777754 444566776443
No 401
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.24 E-value=1.6e-12 Score=101.99 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=101.5
Q ss_pred cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc----ccceeee--
Q 025758 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI----DLELTTL-- 89 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-- 89 (248)
+|.-.+++.+...+..|.... |+||||+||||+..++.+ ++.|++|.+...|+++....+.... ...++..
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~--LIGPNGAGKTTlfNlitG-~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVG--LIGPNGAGKTTLFNLITG-FYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEE--EECCCCCCceeeeeeecc-cccCCCceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 444455555566666665555 999999999999999998 7899999999999866533332210 0011111
Q ss_pred ----cccceeeeCCC-------CcCc-----ch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeE
Q 025758 90 ----SSANHVELSPS-------DAGF-----QD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKV 133 (248)
Q Consensus 90 ----~~~~~~~~~~~-------~~~~-----~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~v 133 (248)
++.+++-+... ..+. .. .+.+.++++.+ +......+++ ..+|++
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~l 170 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKL 170 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCE
Confidence 11111100000 0000 00 11111222111 1111112221 458999
Q ss_pred EEEeCC-CCCCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhheeeecCC
Q 025758 134 LVLNEV-DKLSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIRINSP 189 (248)
Q Consensus 134 iiiDE~-d~l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i~~~~~ 189 (248)
+++||| .+|++.....+..+|.+.++. ..++++-|+ -.+.-.+++|..++.+...
T Consensus 171 LLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd-M~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 171 LLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD-MKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred EEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-cHHHhhhccEEEeccCCcC
Confidence 999999 899999999999999998764 556666555 5555599999988888754
No 402
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.24 E-value=4.4e-10 Score=101.58 Aligned_cols=186 Identities=13% Similarity=0.179 Sum_probs=106.9
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC-
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP- 99 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (248)
++..|.-..-++.+.+++|.|++|+|||++|+.++..+ .... +|. .+..
T Consensus 3 ~~~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~-~~~~--------pfv---------------------~i~~~ 52 (589)
T TIGR02031 3 AKLALTLLAVDPSLGGVAIRARAGTGKTALARALAEIL-PPIM--------PFV---------------------ELPLG 52 (589)
T ss_pred HHHHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhC-CcCC--------CeE---------------------ecCcc
Confidence 34444444445558889999999999999999999843 2110 111 0100
Q ss_pred -CCcCcchhHHHHHHHHHHH-hcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-------------CCeeEE
Q 025758 100 -SDAGFQDRYVVQEVIKEMA-KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLI 164 (248)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-------------~~~~~I 164 (248)
..........+...+..-. ...+ ++-...+..+++|||++.+++..++.|+..+++.. ....+|
T Consensus 53 ~t~d~L~G~idl~~~~~~g~~~~~~-G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lI 131 (589)
T TIGR02031 53 VTEDRLIGGIDVEESLAGGQRVTQP-GLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALI 131 (589)
T ss_pred cchhhcccchhhhhhhhcCcccCCC-CCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEE
Confidence 0000001001111111000 0111 11123455699999999999999999999998642 223456
Q ss_pred EEecCCC---cccHHHhhhhh-eeeecC-CCHHHHHHHHHHHHH-----------------------HcCCCCCHHHHHH
Q 025758 165 LCCNSSS---KVTEAIRSRCL-NIRINS-PTEEQIVKVLEFIAK-----------------------KEGLQLPSGFATR 216 (248)
Q Consensus 165 l~t~~~~---~~~~~l~sR~~-~i~~~~-~~~~~~~~il~~~~~-----------------------~~~~~~~~~~~~~ 216 (248)
.++|..+ .+.+++.+|+- .+.+.. ++.++...++..... ...+.++++.+.+
T Consensus 132 At~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~ 211 (589)
T TIGR02031 132 ATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKE 211 (589)
T ss_pred EecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHH
Confidence 5555443 68899999993 344433 344544555544321 1256788998888
Q ss_pred HHHHc---c-ccHHHHHHHHHHHhh
Q 025758 217 LAEKS---N-RSLRRAILSFETCRV 237 (248)
Q Consensus 217 l~~~~---~-g~~r~~~~~l~~~~~ 237 (248)
|++.+ + .++|..+.++..+..
T Consensus 212 l~~~~~~~gv~s~Ra~i~~~r~ArA 236 (589)
T TIGR02031 212 LVLTAASLGISGHRADLFAVRAAKA 236 (589)
T ss_pred HHHHHHHcCCCCccHHHHHHHHHHH
Confidence 87664 2 236777776665554
No 403
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.24 E-value=5.3e-12 Score=112.67 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----ccccccee------ee
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELT------TL 89 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~ 89 (248)
.+.+.+...+..|. .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+. ....+-.+ ..
T Consensus 18 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 18 KALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTG-IYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred EEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 34555555555553 366999999999999999998 6688899999988654311110 00000010 01
Q ss_pred cccceeeeCCCC---cC-cch---hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 90 SSANHVELSPSD---AG-FQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 90 ~~~~~~~~~~~~---~~-~~~---~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
++.+++.+.... .+ ... ...+.+.++.+. ...+..+|+ ..+|+++++||| ..+|+
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 174 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCH
Confidence 112222221110 00 001 112233333321 111223332 458999999999 89999
Q ss_pred HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.....+.+++.+... +..+|++||+.. ....+.+|+..
T Consensus 175 ~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~ 213 (501)
T PRK10762 175 TETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTV 213 (501)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999988744 345777776654 44467777743
No 404
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.24 E-value=5.2e-11 Score=97.14 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC----CcccceecccceeeccCCcccccceeeecccceee
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP----GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+ ..|.+.++|.++..... ... ....+.......
T Consensus 18 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~~~~~G~i~~~g~~i~~~~~-~~~--~i~~v~q~~~~~ 91 (254)
T PRK10418 18 LVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALG-ILPAGVRQTAGRVLLDGKPVAPCAL-RGR--KIATIMQNPRSA 91 (254)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCCcCCEEEECCeecccccc-ccc--eEEEEecCCccc
Confidence 3444444444443 467999999999999999998 5566 78989888865431100 000 000000000000
Q ss_pred eCCC------------CcCc-chhHHHHHHHHHHH--------hcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758 97 LSPS------------DAGF-QDRYVVQEVIKEMA--------KNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (248)
Q Consensus 97 ~~~~------------~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (248)
+.+. ..+. .....+.+.++.+. ......+|+ ..+|+++|+||| ..|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~L 171 (254)
T PRK10418 92 FNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDL 171 (254)
T ss_pred cCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 0000 0000 01112233333321 112223442 458999999999 899
Q ss_pred CHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 143 ~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
|+.....+.+++++... +..+|++||+... ...+.+|+..+
T Consensus 172 D~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~v~~l 214 (254)
T PRK10418 172 DVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADDVAVM 214 (254)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCEEEEE
Confidence 99999999999987643 4567777776555 34666776443
No 405
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.24 E-value=5.7e-11 Score=95.03 Aligned_cols=144 Identities=22% Similarity=0.242 Sum_probs=83.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------ecccceeeeCCC----Cc-
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSANHVELSPS----DA- 102 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~- 102 (248)
.+.|.||||+||||+++++++ +..+.+|.+.++|++.... .....+-.+. .+..+++.+... ..
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 84 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILG-LIPPAKGTVKVAGASPGKG--WRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLR 84 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCccchHh--hCcEEEecccccccCCCCccHHHHHHhcccccccccc
Confidence 377999999999999999998 6688899999988653200 0000000000 011111111000 00
Q ss_pred -C-cchhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-Ce
Q 025758 103 -G-FQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SC 161 (248)
Q Consensus 103 -~-~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~ 161 (248)
. ......+.+.++.+. ......+|+ ..+|+++|+||| ..||+.....+.+.+.+... +.
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~ 164 (223)
T TIGR03771 85 RPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 0 001112333333321 112223332 458999999999 89999999999999988754 45
Q ss_pred eEEEEecCCCcccHHHhhhhhe
Q 025758 162 RLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+|++||+.. ....+.+|...
T Consensus 165 tvii~sH~~~-~~~~~~d~i~~ 185 (223)
T TIGR03771 165 AILMTTHDLA-QAMATCDRVVL 185 (223)
T ss_pred EEEEEeCCHH-HHHHhCCEEEE
Confidence 6777777755 34456666543
No 406
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.24 E-value=8.4e-10 Score=95.47 Aligned_cols=205 Identities=18% Similarity=0.163 Sum_probs=124.7
Q ss_pred CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
....+++|+..+.+.+.+.+.. .....++++|++||||-.+||+|=+.-.+.+..-+.+++ +..+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNc-------aAip~----- 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNC-------AAIPE----- 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeec-------ccCCH-----
Confidence 3577889998888888777653 223349999999999999999999743222222222222 11110
Q ss_pred eecccce-eeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--------
Q 025758 88 TLSSANH-VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------- 158 (248)
Q Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-------- 158 (248)
... -++.....|... -+.....+.....+...++||||..|+.+.|..|++++++..
T Consensus 206 ----~l~ESELFGhekGAFT----------GA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 206 ----NLLESELFGHEKGAFT----------GAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred ----HHHHHHhhcccccCcC----------CcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCc
Confidence 000 000000000000 000111122224466789999999999999999999998642
Q ss_pred ---CCeeEEEEecCCC-------cccHHHhhhhhe--eeecCCCH--HHH---HHHHHH-HHHHcC---CCCCHHHHHHH
Q 025758 159 ---ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPTE--EQI---VKVLEF-IAKKEG---LQLPSGFATRL 217 (248)
Q Consensus 159 ---~~~~~Il~t~~~~-------~~~~~l~sR~~~--i~~~~~~~--~~~---~~il~~-~~~~~~---~~~~~~~~~~l 217 (248)
-++++|.+||..- .+-++|--|.-+ |++||+-+ +++ ...+.+ .+...+ ..+++++++.+
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2356888888763 466677777754 44455432 232 222222 233333 35889999988
Q ss_pred HHH-ccccHHHHHHHHHHHhhhcc
Q 025758 218 AEK-SNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 218 ~~~-~~g~~r~~~~~l~~~~~~~~ 240 (248)
... ..||+|++.|.++.++....
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcCC
Confidence 866 59999999999999987655
No 407
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=4.6e-11 Score=97.68 Aligned_cols=161 Identities=12% Similarity=0.181 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----Ccccceecccceeecc--CCc-ccccceee---
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDA--GSR-NIDLELTT--- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~--~~~-~~~~~~~~--- 88 (248)
.+.+.+...+.+|. .+.|.||||+||||+++++++ +..+ .+|.+.++|.+..... ... .....+..
T Consensus 18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laG-l~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 18 HAVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNR-MHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhc-cCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 34455555555543 477999999999999999999 4442 5899998886542100 000 00000000
Q ss_pred -----ecccceeeeCCCCcCc-ch---hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeC
Q 025758 89 -----LSSANHVELSPSDAGF-QD---RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNE 138 (248)
Q Consensus 89 -----~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE 138 (248)
.++.+++.+.....+. .. ...+.+.++.+ .......+|+ ..+|+++++||
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 174 (258)
T PRK14241 95 NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174 (258)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0001111100000000 00 01122222221 1122233442 45899999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 139 ~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
| ..||+.....+.+++.+......+|++||+... ...+.+|+.++
T Consensus 175 Pt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~-~~~~~d~i~~l 220 (258)
T PRK14241 175 PCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ-AARVSDQTAFF 220 (258)
T ss_pred CCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 9 799999999999999887555667777776554 44666776555
No 408
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.9e-12 Score=113.75 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee------e
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT------L 89 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~ 89 (248)
.+.+.+...+.+|. .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+. ....+-.+. .
T Consensus 19 ~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcC-CcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 35555666665554 356999999999999999998 6678899999888654311110 000010100 1
Q ss_pred cccceeeeCCC----CcCc---ch---hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758 90 SSANHVELSPS----DAGF---QD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 90 ~~~~~~~~~~~----~~~~---~~---~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
++.+++.+... ..+. .. ...+.+.++.+. ......+|+ ..+|+++|+||| ..
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~ 175 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 11122211110 0010 00 112223333221 111223442 458999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhee
Q 025758 142 LSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+|+.....+.++|.+.... ..+|++||+. .....+.+|+.++
T Consensus 176 LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l 218 (510)
T PRK09700 176 LTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVM 218 (510)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999887543 4566666664 4444677777443
No 409
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=8.4e-12 Score=102.33 Aligned_cols=163 Identities=13% Similarity=0.166 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeecc--CCc-ccccceee----
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDA--GSR-NIDLELTT---- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~---- 88 (248)
.+++.+...+..|. .+.|.||||+|||||++++++.+.. +.+|.+.+++.++.... ... .....+..
T Consensus 24 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 24 LAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 34555555555553 4669999999999999999984321 36788888886542100 000 00000000
Q ss_pred ---ecccceeeeCCCCcCcc--hhHHHHHHHHH---------HHhcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758 89 ---LSSANHVELSPSDAGFQ--DRYVVQEVIKE---------MAKNRPIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
.+..+++.+.....+.. ....+.+.+.. ........+|+ ..+|+++|+||| ..
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 01111111111000000 00111111111 11222333442 458999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
||+..+..+.+++.+...+..+|++|++.+ ....+.+|+..+.
T Consensus 182 LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 182 LDPISTLRIEELMHELKEQYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 999999999999998766666777776644 4456667775554
No 410
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.3e-11 Score=102.18 Aligned_cols=159 Identities=13% Similarity=0.173 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----cccccceee-------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLELTT------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------- 88 (248)
+++.+...+..|.. +.|.||||+||||+++++++ +..+.+|.+.++|.+....... ....+-.+.
T Consensus 21 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-l~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 21 ALKGININIKKGEV--TAILGGNGAGKSTLFQNLNG-ILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 55555666665543 66999999999999999998 6788999999998765311000 000000000
Q ss_pred ecccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.++.+++.+.....+.... ..+.+.++.+ .......+|+ ..+|+++++||| ..||+...
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 0111111110000011110 1112221211 1222333442 458999999999 89999999
Q ss_pred HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..+.+++.+... +..+|++|++.+. ...+.+|..+
T Consensus 178 ~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~ 214 (283)
T PRK13636 178 SEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFV 214 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEE
Confidence 999999988754 4567777777555 4467777743
No 411
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=6e-11 Score=97.48 Aligned_cols=160 Identities=14% Similarity=0.220 Sum_probs=87.7
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeecc-C--Ccccccceeee-----
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDA-G--SRNIDLELTTL----- 89 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~----- 89 (248)
++.+...+.+|. .+.|.||||+|||||++++++.+.. +..|.+.++|.++.... . .......+...
T Consensus 35 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 35 LFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 333444444443 3679999999999999999994432 37899998886543100 0 00000000000
Q ss_pred --cccceeeeCCCCcCc--c--h-hHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 90 --SSANHVELSPSDAGF--Q--D-RYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 90 --~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
++.+++.+.....+. . . ...+.+.++.+. ...+..+|+ ..+|+++++||| .
T Consensus 113 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 192 (267)
T PRK14235 113 PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS 192 (267)
T ss_pred CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 111111110000000 0 0 011222222211 112233442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.||+.....+.++|.+...+..+|++|++.+. ...+.+|+..+
T Consensus 193 ~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~-~~~~~d~v~~l 235 (267)
T PRK14235 193 ALDPIATAKVEELIDELRQNYTIVIVTHSMQQ-AARVSQRTAFF 235 (267)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH-HHhhCCEEEEE
Confidence 99999999999999987655567777777554 44666776443
No 412
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.24 E-value=8.1e-12 Score=102.74 Aligned_cols=161 Identities=18% Similarity=0.189 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC--------cccceecccceeeccCCc-c--cccce--
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--------AEKVKVENKTWKIDAGSR-N--IDLEL-- 86 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~--------~~~~~~~~~~~~~~~~~~-~--~~~~~-- 86 (248)
.+.+.+...+..|. .+.|.||||+||||+++++++ +..+. .|.+.++|.++....... . ..+-.
T Consensus 15 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG-~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 15 AILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAG-DLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91 (272)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence 34555555555553 366999999999999999998 55665 788888886543111000 0 00000
Q ss_pred ----eeecccceeeeCC--CC--cCcc---hhHHHHHHHHHH-----HhcCCCcCCC------------C---------C
Q 025758 87 ----TTLSSANHVELSP--SD--AGFQ---DRYVVQEVIKEM-----AKNRPIDTKG------------K---------R 129 (248)
Q Consensus 87 ----~~~~~~~~~~~~~--~~--~~~~---~~~~~~~~~~~~-----~~~~~~~~~~------------~---------~ 129 (248)
...+..+++.+.. .. .... ....+.+.++.+ .......+|+ . .
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~ 171 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171 (272)
T ss_pred CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence 0011112221110 00 0000 111122322221 1122223332 2 4
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+|+++++||| ..||+.....+.+++.+... +..+|++|++... ...+.+|+..+
T Consensus 172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~-~~~~~d~i~~l 228 (272)
T PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHADRIAML 228 (272)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEE
Confidence 8999999999 89999999999999998754 3567777777554 45667777444
No 413
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.4e-11 Score=100.62 Aligned_cols=56 Identities=7% Similarity=0.166 Sum_probs=43.9
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+++++||| ..||......+.+.+.+......+|++|++.. ....+.+|+..+
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~-~~~~~~d~v~~l 225 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ-QVARVADYVAFL 225 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH-HHHHhCCEEEEE
Confidence 458999999999 79999999999999988765567777777754 555667777444
No 414
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.23 E-value=1.1e-11 Score=101.75 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC------cccccceee------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS------RNIDLELTT------ 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------ 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++...... ....+-.+.
T Consensus 26 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 26 VLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLG-LEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred EeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4455555555553 366999999999999999998 6788899999888654311110 000000000
Q ss_pred --ecccceeeeCCCCc-Ccc---hhHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 89 --LSSANHVELSPSDA-GFQ---DRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 89 --~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
.++.+++.+..... ... ....+.+.++.+. ......+|+ ..+|+++++||| ..||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 00000000000000 000 0112223333221 112223332 458999999999 8999
Q ss_pred HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+..+..+++.+++... +..+|++|++.. ....+.+|+..+
T Consensus 183 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l 224 (265)
T TIGR02769 183 MVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVM 224 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEE
Confidence 9999999999988754 456777777654 344566776444
No 415
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.5e-11 Score=100.14 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-CC---CcccceecccceeeccC---Ccccccceee----
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GP---GAEKVKVENKTWKIDAG---SRNIDLELTT---- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~---- 88 (248)
.+.+.+...+.+|. .+.|.||||+||||+++++++... .+ .+|.+.++|.++..... .......+..
T Consensus 19 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 19 KALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 34555555555553 367999999999999999998321 24 47888888865421000 0000000000
Q ss_pred ---ecccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 ---LSSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.++.+++.+.....+.... ..+.+.++.+ .......+|+ ..+|+++|+|||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0111111110000000000 1111122111 1122333442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.++|.+...+..+|++||+... ...+.+|+.++
T Consensus 177 ~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~-~~~~~d~i~~l 220 (252)
T PRK14239 177 SALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ-ASRISDRTGFF 220 (252)
T ss_pred cccCHHHHHHHHHHHHHHhhCCeEEEEECCHHH-HHHhCCEEEEE
Confidence 899999999999999887655667777777654 44566776443
No 416
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.23 E-value=1.7e-11 Score=107.15 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
.+++.++..+..|..-. |.|++||||||++|++++ +..+.+|.+..+|.++... ... .......-.+.|+-
T Consensus 305 ~Av~~VSf~l~~GE~lg--lVGeSGsGKSTlar~i~g-L~~P~~G~i~~~g~~~~~~-~~~-----~~~~r~~~QmvFQd 375 (539)
T COG1123 305 KAVDDVSFDLREGETLG--LVGESGSGKSTLARILAG-LLPPSSGSIIFDGQDLDLT-GGE-----LRRLRRRIQMVFQD 375 (539)
T ss_pred eeeeeeeeEecCCCEEE--EECCCCCCHHHHHHHHhC-CCCCCCceEEEeCcccccc-cch-----hhhhhhheEEEEeC
Confidence 44555566666665444 999999999999999998 8889999999988762211 100 00000011122222
Q ss_pred CCcCcchhHH-----------------------HHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeC
Q 025758 100 SDAGFQDRYV-----------------------VQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNE 138 (248)
Q Consensus 100 ~~~~~~~~~~-----------------------~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE 138 (248)
+..+..+..+ +.++++. +...+|.++|+ ..+|++++.||
T Consensus 376 p~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE 455 (539)
T COG1123 376 PYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE 455 (539)
T ss_pred cccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC
Confidence 2222222211 2222221 35556777875 34899999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhhe
Q 025758 139 V-DKLSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 139 ~-d~l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+ ..||+..+..++.++.+.... ..+++|||+. .+...+++|..+
T Consensus 456 p~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~v 502 (539)
T COG1123 456 PVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAV 502 (539)
T ss_pred CccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEE
Confidence 9 899999999999999877554 6789998874 555688888743
No 417
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.23 E-value=3.8e-11 Score=96.11 Aligned_cols=158 Identities=20% Similarity=0.309 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc--c--ceeeccCC-------cccccceeee
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN--K--TWKIDAGS-------RNIDLELTTL 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~--~--~~~~~~~~-------~~~~~~~~~~ 89 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++ . +.....+. ....+-.+..
T Consensus 23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 23 VLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYA-NYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred EEecceEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 3444544555443 367999999999999999998 6678888888763 1 21100000 0000000000
Q ss_pred ------cccceeeeCCCCcCcch---hHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758 90 ------SSANHVELSPSDAGFQD---RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 90 ------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
++.+.+.+.....+... ...+.+.++.+. ......+|+ ..+|+++++||| ..
T Consensus 100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 179 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179 (224)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 00001110000001110 111222232221 112223332 448999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhh
Q 025758 142 LSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
+|+.....+++.+.+... +..+|++||+ ......+.+|+.
T Consensus 180 LD~~~~~~l~~~l~~~~~~g~tii~vsH~-~~~~~~~~d~i~ 220 (224)
T TIGR02324 180 LDAANRQVVVELIAEAKARGAALIGIFHD-EEVRELVADRVM 220 (224)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcceeE
Confidence 999999999999988754 3567777776 444445666543
No 418
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.3e-11 Score=100.48 Aligned_cols=56 Identities=9% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+++++||| ..+|+.....+.+++++...+..+|++|++.. ....+.+|+..+
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH-QAARVSDTTSFF 220 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 458999999999 89999999999999998765566777777655 444677777444
No 419
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.5e-11 Score=98.88 Aligned_cols=160 Identities=14% Similarity=0.191 Sum_probs=88.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccC---Ccccccceee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAG---SRNIDLELTT---- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +.. +.+|.+.++|.++..... .......+..
T Consensus 35 il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 35 AIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNR-MNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHh-ccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 3334444444443 367999999999999999999 443 468889888865531000 0000000000
Q ss_pred ---ecccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 89 ---LSSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
.++.+++.+.....+.... ..+.+.++.+ ....+..+|+ ..+++++++|||
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt 191 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA 191 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0111111110000010000 1111122211 1222334442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+++.+...+..+|++|++.+ ....+.+|+.++
T Consensus 192 ~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 192 SALDPISTMQLEETMFELKKNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 89999999999999998765566777777655 455677777443
No 420
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.23 E-value=3.4e-11 Score=97.54 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCc--ccccce--eee------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSR--NIDLEL--TTL------ 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~------ 89 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++.+ ..+.+|.+.++|.+........ ...+.+ +..
T Consensus 15 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 15 ILKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 4445555555443 36799999999999999999843 2578899999886543111100 000000 000
Q ss_pred cccceeeeCCCC-cC------cch---hHHHHHHHHHH------HhcCCC-cCCC------------CCCeeEEEEeCC-
Q 025758 90 SSANHVELSPSD-AG------FQD---RYVVQEVIKEM------AKNRPI-DTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 90 ~~~~~~~~~~~~-~~------~~~---~~~~~~~~~~~------~~~~~~-~~~~------------~~~~~viiiDE~- 139 (248)
+..+++.+.... .. ... ...+.+.++.+ ...... .+|+ ..+|+++++|||
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 172 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 000000000000 00 000 01122222221 111222 2552 448999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHH-hhhhhe
Q 025758 140 DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCLN 183 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l-~sR~~~ 183 (248)
..||+.....+.+++.+... +..+|++||+.+.+. .+ .+|+..
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~-~~~~d~i~~ 217 (243)
T TIGR01978 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN-YIKPDYVHV 217 (243)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH-hhcCCeEEE
Confidence 89999999999999988754 356777777765443 44 566643
No 421
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=6.2e-12 Score=112.36 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=92.0
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC--CcccceecccceeeccCC----cccccceee--
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS----RNIDLELTT-- 88 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~-- 88 (248)
+...+.+.+...+..|. .+.|.||||+|||||++++++ +..+ .+|.+.++|.++...... ....+-.+.
T Consensus 16 ~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 92 (506)
T PRK13549 16 GGVKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELA 92 (506)
T ss_pred CCeEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhC-CCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc
Confidence 33345566666666554 366999999999999999999 5554 689998888655311100 000011110
Q ss_pred ----ecccceeeeCCCCc--C-cch---hHHHHHHHHHHHh-----cCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 89 ----LSSANHVELSPSDA--G-FQD---RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 89 ----~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.++.+++.+..... + ... ...+.+.++.+.- .....+|+ ..+|+++|+||| .
T Consensus 93 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 172 (506)
T PRK13549 93 LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172 (506)
T ss_pred cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 11112222211100 1 010 1123333333211 11123332 458999999999 7
Q ss_pred CCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.||+.....+.+++.+... +..+|++||+.. ....+.+|+.+
T Consensus 173 ~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~ 215 (506)
T PRK13549 173 SLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICV 215 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEE
Confidence 9999999999999988743 345677766654 44466677643
No 422
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=3.4e-11 Score=99.61 Aligned_cols=159 Identities=17% Similarity=0.239 Sum_probs=88.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-C----cccccceeee------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-S----RNIDLELTTL------ 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~------ 89 (248)
+++.+...+..|. .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+ . ......+...
T Consensus 22 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 22 ALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNG-LHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 3444444455443 366999999999999999998 678889999998875432110 0 0000000000
Q ss_pred ---cccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 90 ---SSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
++.+.+.+.....+.... ..+.+.++.+ .......+|+ ..+|+++|+||| ..||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 178 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 111111110000001000 0112222221 1112223432 448999999999 89999
Q ss_pred HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.....+.+.|.+... +..+|++|++.. ....+.+|+..
T Consensus 179 ~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 217 (280)
T PRK13649 179 KGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYV 217 (280)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEE
Confidence 999999999988754 456677776654 44566677643
No 423
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.23 E-value=8.6e-11 Score=96.00 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=82.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--e-----eecccceeeeCCCCcCcchh
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--T-----TLSSANHVELSPSDAGFQDR 107 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~ 107 (248)
.+.+.|++|+||||+++++++ +..+..|.+.++|.++....... .....+ + ..+..+++.... . ...
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~--~--~~~ 123 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFR-MVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC--K--CTD 123 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHc-ccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCC--C--CCH
Confidence 477999999999999999998 66888899988886543111000 000000 0 000001111000 0 000
Q ss_pred HHHHHHH-----HHHHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 108 YVVQEVI-----KEMAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 108 ~~~~~~~-----~~~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
....+.+ ....... ...++. ..+|+++++||| ..||+.....+.+++.+..
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~ 203 (257)
T cd03288 124 DRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF 203 (257)
T ss_pred HHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc
Confidence 1111111 1111111 112331 458899999999 8999999999999998876
Q ss_pred CCeeEEEEecCCCcccHHHhhhhhee
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+..+|++|++...+. . .+|+..+
T Consensus 204 ~~~tiii~sh~~~~~~-~-~dri~~l 227 (257)
T cd03288 204 ADRTVVTIAHRVSTIL-D-ADLVLVL 227 (257)
T ss_pred CCCEEEEEecChHHHH-h-CCEEEEE
Confidence 5677888888877664 2 6776433
No 424
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=6e-11 Score=96.74 Aligned_cols=161 Identities=14% Similarity=0.193 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-CC---Ccccceecccceeecc-C--Ccccccceeee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GP---GAEKVKVENKTWKIDA-G--SRNIDLELTTL---- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-~~---~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~---- 89 (248)
+++.+...+.+|. .+.+.||||+||||+++++++.+. .+ ..|.+.++|.+..... + .......+..-
T Consensus 21 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 21 ALYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 4445544555443 367999999999999999998332 12 3688888886543110 0 00000000000
Q ss_pred ---cccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 90 ---SSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
++.+++.+.....+.... ..+.+.++.+ .......+|+ ..+|+++++||| .
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 178 (253)
T PRK14261 99 FPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCS 178 (253)
T ss_pred CcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 111111111110010000 1112222211 1122223442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.||+.....+.+++.+...+..+|++|++...+ +.+.+|+..+
T Consensus 179 gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~-~~~~d~v~~l 221 (253)
T PRK14261 179 ALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA-ARVSDYTGFM 221 (253)
T ss_pred cCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH-HhhCCEEEEE
Confidence 999999999999999876656677777765554 3566776443
No 425
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.6e-10 Score=102.79 Aligned_cols=205 Identities=17% Similarity=0.290 Sum_probs=136.0
Q ss_pred CCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
|--.++-++|.++-++.+.+.+......+-+|+|+||+|||.++.-+|..+...+....=.+...+.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------- 231 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------- 231 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-------------
Confidence 3456777899999998888888766666677999999999999999999875433211100000000
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHHHHHHHHHHHHhc
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRTMEKYS 158 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~ll~~le~~~ 158 (248)
+.+..--.|..-....++-++.+.+.-. ...+-|+||||++.+- -++.|.|...+-.
T Consensus 232 -------LD~g~LvAGakyRGeFEeRlk~vl~ev~-----~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-- 297 (786)
T COG0542 232 -------LDLGSLVAGAKYRGEFEERLKAVLKEVE-----KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-- 297 (786)
T ss_pred -------ecHHHHhccccccCcHHHHHHHHHHHHh-----cCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--
Confidence 1111111222222334444554443222 1236799999998662 1245555555543
Q ss_pred CCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccc------
Q 025758 159 ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR------ 223 (248)
Q Consensus 159 ~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g------ 223 (248)
....+|-.|+..+ +-.++|-.|++.|..+.|+.++...||.-..++ .++.++++++...+..+.+
T Consensus 298 GeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~ 377 (786)
T COG0542 298 GELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRF 377 (786)
T ss_pred CCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCC
Confidence 3356777776543 577899999999999999999999999877665 3778999999998876532
Q ss_pred cHHHHHHHHHHHhhhc
Q 025758 224 SLRRAILSFETCRVQQ 239 (248)
Q Consensus 224 ~~r~~~~~l~~~~~~~ 239 (248)
-+-.+|.+++.++...
T Consensus 378 LPDKAIDLiDeA~a~~ 393 (786)
T COG0542 378 LPDKAIDLLDEAGARV 393 (786)
T ss_pred CCchHHHHHHHHHHHH
Confidence 2678899999888543
No 426
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.23 E-value=5.5e-10 Score=99.59 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=54.3
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhc-------------CCeeEEEEecCCC-------------cccHHHhhhh-h
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS-------------KVTEAIRSRC-L 182 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~-------------~~~~~Il~t~~~~-------------~~~~~l~sR~-~ 182 (248)
+..+++|||++.|++..+..|+..+|+.. ....+|.++|... .+.+++.||| .
T Consensus 300 ~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdL 379 (509)
T smart00350 300 DNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDL 379 (509)
T ss_pred CCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceee
Confidence 55699999999999999999999998642 2234566666331 5899999999 3
Q ss_pred -eeeecCCCHHHHHHHHHHHH
Q 025758 183 -NIRINSPTEEQIVKVLEFIA 202 (248)
Q Consensus 183 -~i~~~~~~~~~~~~il~~~~ 202 (248)
.+..+.|+.+.-..++.+++
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEecCCCChHHHHHHHHHHH
Confidence 45557788777777766643
No 427
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.22 E-value=1.7e-11 Score=97.38 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=75.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccce-ecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHH--
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK-VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV-- 113 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 113 (248)
+.|.||||+||||+++++++ +..+.+|.+. +++..+. .+... .-....+..+++.+.....+..........
T Consensus 16 ~~l~G~NGsGKSTLlk~i~G-l~~~~sG~i~~~~~~~~~--~~~~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 90 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLCG-LDAPDEGDFIGLRGDALP--LGANS--FILPGLTGEENARMMASLYGLDGDEFSHFCYQ 90 (213)
T ss_pred EEEECCCCCCHHHHHHHHhC-CccCCCCCEEEecCceec--ccccc--ccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66999999999999999998 6678888875 5553221 00000 000111111222211110011111101111
Q ss_pred ---HHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHH
Q 025758 114 ---IKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177 (248)
Q Consensus 114 ---~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l 177 (248)
+..........+++ ..+|+++++||| ..+++.....+.+.+.+..+...+|++||+.. ....+
T Consensus 91 ~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~-~~~~~ 169 (213)
T PRK15177 91 LTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR-LIKEH 169 (213)
T ss_pred HhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH-HHHHh
Confidence 11111111222221 448899999997 88999988888887754333344677777655 44456
Q ss_pred hhhhhe
Q 025758 178 RSRCLN 183 (248)
Q Consensus 178 ~sR~~~ 183 (248)
.+|+..
T Consensus 170 ~d~i~~ 175 (213)
T PRK15177 170 CHAFGV 175 (213)
T ss_pred cCeeEE
Confidence 677643
No 428
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=7.7e-11 Score=97.16 Aligned_cols=57 Identities=9% Similarity=0.119 Sum_probs=44.8
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
..+|+++|+||| ..||+.....+.++|.+......+|++|++...+ ..+.+|..++.
T Consensus 177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~-~~~~d~i~~l~ 234 (274)
T PRK14265 177 AMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQA-SRVADWTAFFN 234 (274)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEe
Confidence 458999999999 8999999999999999876556677777775544 46667776654
No 429
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.22 E-value=2.4e-11 Score=97.19 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
.+++.++..+..|...+ |.|.+||||||++|++.+ |..+.+|.+...|.++.....
T Consensus 27 ~avd~Vsf~i~~ge~~g--lVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g~~i~~~~~--------------------- 82 (268)
T COG4608 27 KAVDGVSFSIKEGETLG--LVGESGCGKSTLGRLILG-LEEPTSGEILFEGKDITKLSK--------------------- 82 (268)
T ss_pred EEecceeEEEcCCCEEE--EEecCCCCHHHHHHHHHc-CcCCCCceEEEcCcchhhcch---------------------
Confidence 35556666666766555 999999999999999998 889999999888875441110
Q ss_pred CCcCcchhHHHHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-
Q 025758 100 SDAGFQDRYVVQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA- 159 (248)
Q Consensus 100 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~- 159 (248)
......+.+.+.. ....+|..+|+ .-+|++++.||+ .++|...+..++.++.+...
T Consensus 83 ----~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 83 ----EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred ----hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence 0011112233222 33344555553 227899999999 88999999999999887643
Q ss_pred -CeeEEEEecCCCcccHHHhhhhheeeecCC
Q 025758 160 -SCRLILCCNSSSKVTEAIRSRCLNIRINSP 189 (248)
Q Consensus 160 -~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~ 189 (248)
+...++||++. .+...+.+|..+......
T Consensus 159 ~~lt~lFIsHDL-~vv~~isdri~VMy~G~i 188 (268)
T COG4608 159 LGLTYLFISHDL-SVVRYISDRIAVMYLGKI 188 (268)
T ss_pred hCCeEEEEEEEH-HhhhhhcccEEEEecCce
Confidence 45788888875 344466667655444433
No 430
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=3.7e-11 Score=99.66 Aligned_cols=160 Identities=17% Similarity=0.316 Sum_probs=93.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---C--cccccceee-------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---S--RNIDLELTT------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~------- 88 (248)
+++.+...+..|.. +.|.||||+||||+++++++ +..+..|.+.++|..+..... . ....+-.+.
T Consensus 22 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 22 ALDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNG-LLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 45555555555543 66999999999999999998 678899999998876542110 0 000000000
Q ss_pred ecccceeeeCCCCcCcchh---HHHHHHHHHHH-------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHH
Q 025758 89 LSSANHVELSPSDAGFQDR---YVVQEVIKEMA-------KNRPIDTKG------------KRGFKVLVLNEV-DKLSRE 145 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~ 145 (248)
.++.+.+.+.....+.... ..+.+.++.+. ...+..+|+ ..+|+++|+||| ..||+.
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 0111111111111111111 11223333211 122233442 458999999999 899999
Q ss_pred HHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 146 ~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+..+++++.+... +..+|++|++... ...+.+|+.++
T Consensus 179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~drv~~l 218 (287)
T PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADRIIVM 218 (287)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence 99999999988754 4567777777544 44667887544
No 431
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.22 E-value=7e-12 Score=124.86 Aligned_cols=132 Identities=18% Similarity=0.166 Sum_probs=81.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhH--------
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-------- 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 108 (248)
+.|.||||+||||+++++++ +..+++|.+.++|.++....... ...+++.+......+..
T Consensus 1968 ~gLLG~NGAGKTTLlkmL~G-ll~ptsG~I~i~G~~i~~~~~~~-----------r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257 1968 FGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSILTNISDV-----------HQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECcchHHHH-----------hhhEEEEeccccCCCCCCHHHHHHH
Confidence 66999999999999999999 67899999999987653110000 01122222211111111
Q ss_pred --------------HHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758 109 --------------VVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (248)
Q Consensus 109 --------------~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~ 156 (248)
.+.+.++. ..+.....+|+ .++|+|+++||| .+||+..+..++++|.+
T Consensus 2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2036 YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 11122211 11222223332 458999999999 89999999999999988
Q ss_pred hcC-CeeEEEEecCCCcccHHHhhhh
Q 025758 157 YSA-SCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 157 ~~~-~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
..+ +..+|++||+.+ ..+.+++|+
T Consensus 2116 l~~~g~TIILtTH~me-e~e~lcDrV 2140 (2272)
T TIGR01257 2116 IIREGRAVVLTSHSME-ECEALCTRL 2140 (2272)
T ss_pred HHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 643 445666666654 334555554
No 432
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=6.1e-11 Score=97.07 Aligned_cols=160 Identities=15% Similarity=0.154 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccCC---ccccccee------
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAGS---RNIDLELT------ 87 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~------ 87 (248)
++.+...+.+|. .+.+.||||+|||||++++++ +..+ ..|.+.++|.++...... ........
T Consensus 24 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 24 VRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNR-MNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHc-ccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 334444444443 367999999999999999998 4443 678888888755310000 00000000
Q ss_pred -eecccceeeeCCCCcCcc--hhHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758 88 -TLSSANHVELSPSDAGFQ--DRYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (248)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (248)
..+..+++.+........ ....+.+.++.+. ......+++ ..+|+++++||| ..|
T Consensus 101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgL 180 (261)
T PRK14263 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL 180 (261)
T ss_pred ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 001111111110000000 0112233332211 111223442 458999999999 899
Q ss_pred CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 143 ~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
|+..+..+++++.+...+..+|++|++... ...+.+|+.++.
T Consensus 181 D~~~~~~l~~~l~~~~~~~tii~isH~~~~-i~~~~d~v~~l~ 222 (261)
T PRK14263 181 DPIATRRVEELMVELKKDYTIALVTHNMQQ-AIRVADTTAFFS 222 (261)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHHhCCEEEEEe
Confidence 999999999999988655667777777554 457778876664
No 433
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.5e-11 Score=101.37 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccC--Ccccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAG--SRNIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~----- 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+ ..|.+.+++.++..... .......+..
T Consensus 36 il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~G-l~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 36 VLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNR-MNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhc-cCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 4444444554443 367999999999999999998 4443 58888888865431000 0000000000
Q ss_pred --ecccceeeeCCCCcCcchhHH----HHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 89 --LSSANHVELSPSDAGFQDRYV----VQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.+..+++.+............ +.+.++.+. ...+..+|+ ..+|+++++||| .
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~ 192 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS 192 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 011111111000000000001 111222211 111223442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.||...+..+.+.+.+......+|++|++.. ....+.+|+..+
T Consensus 193 ~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~-~~~~~~dri~~l 235 (276)
T PRK14271 193 ALDPTTTEKIEEFIRSLADRLTVIIVTHNLA-QAARISDRAALF 235 (276)
T ss_pred cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999998765566777777755 444666777444
No 434
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=3.9e-11 Score=100.83 Aligned_cols=159 Identities=12% Similarity=0.201 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc--------------C---Ccc--
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA--------------G---SRN-- 81 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~--------------~---~~~-- 81 (248)
+++.+...+..|. .+.|.||||+|||||++++++ +..+.+|.+.++|..+.... . ...
T Consensus 41 ~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~G-l~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 41 ALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNG-LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 4555555555553 366999999999999999998 77889999999886553210 0 000
Q ss_pred cccceee-------ecccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeE
Q 025758 82 IDLELTT-------LSSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKV 133 (248)
Q Consensus 82 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~v 133 (248)
..+-++. .++.+++.+.+...+.... ..+.+.++.+ ....+..+|+ ..+|++
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 0000000 0111111111111111111 1122222221 1222334443 458999
Q ss_pred EEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 134 LVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 134 iiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+|+||| ..+|+.....+.+++.+... +..+|++||+.+. ...+.+|+.+
T Consensus 198 LLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~-~~~~adri~v 248 (320)
T PRK13631 198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH-VLEVADEVIV 248 (320)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence 999999 89999999999999987643 4567777777654 3366677643
No 435
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.8e-11 Score=99.68 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+++++||| ..||+.....+.+.+.+...+..+|++||+... ...+.+|+..+
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~-~~~~~d~i~~l 220 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ-ASRISDKTAFF 220 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH-HHHhCCEEEEE
Confidence 458999999999 899999999999999887655667777777654 44566776443
No 436
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=5.3e-11 Score=97.29 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=87.9
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccCC--c-ccccceee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAGS--R-NIDLELTT---- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~---- 88 (248)
+++.+...+..|. .+.|.||||+||||+++++++ +.. +.+|.+.++|......... . .....+..
T Consensus 27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-l~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 27 ALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNR-MNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 4444444455543 367999999999999999998 443 3688888888654310000 0 00000000
Q ss_pred ---ecccceeeeCCCCcCcchh---HHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 89 ---LSSANHVELSPSDAGFQDR---YVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.+..+++.+.....+.... ..+.+.++.+. ......+|+ ..+|+++++||| .
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 0000111110000000000 01222232221 112223332 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+|+.....+.+++.+...+..+|++|++...+ ..+.+|+.++
T Consensus 184 ~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~-~~~~d~i~~l 226 (258)
T PRK14268 184 ALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA-ARISDYTGFF 226 (258)
T ss_pred ccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH-HHhCCEEEEE
Confidence 999999999999998876556677777775543 4666776544
No 437
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.9e-11 Score=101.42 Aligned_cols=159 Identities=15% Similarity=0.264 Sum_probs=92.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----cc--cccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RN--IDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~----- 88 (248)
+++.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|..+...... .. ..+-++.
T Consensus 22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 22 AIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINA-LLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 4555555555553 366999999999999999998 6788999999988755311100 00 0000000
Q ss_pred --ecccceeeeCCCCcCcchh---HHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 89 --LSSANHVELSPSDAGFQDR---YVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
.++.+++.+.+...+.... ..+.++++.+. ...+..+|+ ..+|+++++||| ..||+
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 0111222221111111111 11222222221 112233442 458999999999 89999
Q ss_pred HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 145 ~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.....+++++.+... +..+|++|++.+.+ ..+.+|+.+
T Consensus 179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~-~~~~dri~~ 218 (286)
T PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEV-ARYADEVIV 218 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HHhCCEEEE
Confidence 999999999988742 46777777776644 456677743
No 438
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.2e-10 Score=94.20 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=106.4
Q ss_pred CCCcccccccHHHHHHHHHHhh----------c-C-CCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVT----------E-Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~----------~-~-~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~ 75 (248)
-.+|+++-|.......|..-+. . | ++|- ++|+||||+|||.+|+++|..+.+.-
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf------------- 194 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF------------- 194 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce-------------
Confidence 3478888887777777776542 1 1 2333 89999999999999999999762211
Q ss_pred ccCCcccccceeeecccceeeeCCCCc-Cc---chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDA-GF---QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (248)
+-+..+.. +. .+...+++.+++... ..+.++++||+|...
T Consensus 195 -------------------l~v~ss~lv~kyiGEsaRlIRemf~yA~~---------~~pciifmdeiDAigGRr~se~T 246 (388)
T KOG0651|consen 195 -------------------LKVVSSALVDKYIGESARLIRDMFRYARE---------VIPCIIFMDEIDAIGGRRFSEGT 246 (388)
T ss_pred -------------------EEeeHhhhhhhhcccHHHHHHHHHHHHhh---------hCceEEeehhhhhhccEEecccc
Confidence 11111110 11 122234555555443 356899999998752
Q ss_pred ---HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcC--CCCC
Q 025758 144 ---REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEG--LQLP 210 (248)
Q Consensus 144 ---~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~--~~~~ 210 (248)
...+..|..++++. ...+++|+++|+++.+.++|..-. ..+..|.|.......+++-....-. -.++
T Consensus 247 s~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid 326 (388)
T KOG0651|consen 247 SSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID 326 (388)
T ss_pred chhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc
Confidence 34566666666543 234789999999999999997644 4566677776666655543322211 1355
Q ss_pred HHHHHHHHHHccc
Q 025758 211 SGFATRLAEKSNR 223 (248)
Q Consensus 211 ~~~~~~l~~~~~g 223 (248)
.+.+-.+.+.++|
T Consensus 327 ~eaivK~~d~f~g 339 (388)
T KOG0651|consen 327 DEAILKLVDGFNG 339 (388)
T ss_pred HHHHHHHHhccCh
Confidence 5555555554443
No 439
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.21 E-value=6e-11 Score=101.52 Aligned_cols=144 Identities=17% Similarity=0.249 Sum_probs=83.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc----eeeccCC-------cccccceee------ecccceeeeCC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT----WKIDAGS-------RNIDLELTT------LSSANHVELSP 99 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~------~~~~~~~~~~~ 99 (248)
+.|.||||+|||||++++++ +..+.+|.+.++|.. .....+. ....+-++. .++.+++.+..
T Consensus 53 ~~I~G~nGsGKSTLlr~L~G-l~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~ 131 (382)
T TIGR03415 53 CVLMGLSGSGKSSLLRAVNG-LNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGL 131 (382)
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHH
Confidence 78999999999999999998 778999999998852 2100000 000000000 01111111110
Q ss_pred CCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 100 SDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 100 ~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
...+.... ..+.+.++.+ ....+..+|+ ..+|+|+++||+ ..||+..+..+.+.+.+..
T Consensus 132 ~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~ 211 (382)
T TIGR03415 132 EMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 00011100 1122222221 1122233442 458999999999 8999999999999998775
Q ss_pred C--CeeEEEEecCCCcccHHHhhhhh
Q 025758 159 A--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 159 ~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
. +..+|++||+.+.+ ..+.+|+.
T Consensus 212 ~~~~~TII~iTHdl~e~-~~l~DrI~ 236 (382)
T TIGR03415 212 AKLNKTIIFVSHDLDEA-LKIGNRIA 236 (382)
T ss_pred HhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence 4 45788888876654 46777773
No 440
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=4.7e-11 Score=97.69 Aligned_cols=161 Identities=15% Similarity=0.247 Sum_probs=88.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-C---CcccceecccceeeccCC--c-ccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-P---GAEKVKVENKTWKIDAGS--R-NIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-~---~~~~~~~~~~~~~~~~~~--~-~~~~~~~~----- 88 (248)
+++.+...+.+|. .+.|.||||+|||||++++++.+.. + ..|.+.++|.+....... . .....+..
T Consensus 27 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 27 ALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 4444444555543 3679999999999999999994421 3 478888888654310000 0 00000000
Q ss_pred --ecccceeeeCCCCcCc-chh---HHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 89 --LSSANHVELSPSDAGF-QDR---YVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.+..+++.+.....+. ... ..+.+.++.+. ......+|+ ..+|+++++||| .
T Consensus 105 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 184 (259)
T PRK14274 105 FPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTS 184 (259)
T ss_pred cccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 0111111111100010 000 11122222211 112223332 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.||+.....+.+++.+...+..+|++||+.. ....+.+|+..+
T Consensus 185 ~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~-~~~~~~d~i~~l 227 (259)
T PRK14274 185 ALDPVSTRKIEELILKLKEKYTIVIVTHNMQ-QAARVSDQTAFF 227 (259)
T ss_pred cCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 9999999999999998765566777777755 444666776544
No 441
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.21 E-value=2.6e-11 Score=99.36 Aligned_cols=161 Identities=15% Similarity=0.234 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC---cccceecccceeecc--C----C--ccccccee
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG---AEKVKVENKTWKIDA--G----S--RNIDLELT 87 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~---~~~~~~~~~~~~~~~--~----~--~~~~~~~~ 87 (248)
..+++.+...+..|. .+.|.||||+||||+++++++ +..+. +|.+.++|....... + . ....+-.+
T Consensus 17 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q 93 (262)
T PRK09984 17 HQALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSG-LITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQ 93 (262)
T ss_pred eEEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhc-cCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcc
Confidence 334555555555553 367999999999999999998 44543 488888886543110 0 0 00000000
Q ss_pred ------eecccceeeeCCCCc--------Cc-c--hhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeE
Q 025758 88 ------TLSSANHVELSPSDA--------GF-Q--DRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKV 133 (248)
Q Consensus 88 ------~~~~~~~~~~~~~~~--------~~-~--~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~v 133 (248)
..++.+++.+..... +. . ....+.+.++.+ ....+..+|+ ..+|++
T Consensus 94 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 173 (262)
T PRK09984 94 QFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKV 173 (262)
T ss_pred ccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCE
Confidence 001111111110000 00 0 011223333222 1223334442 458999
Q ss_pred EEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 134 LVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 134 iiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+++||| ..||......+.+.|.+... +..+|++|++... ...+.+|+..
T Consensus 174 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~ 225 (262)
T PRK09984 174 ILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVA 225 (262)
T ss_pred EEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 999999 89999999999999998753 4567777777654 3466677643
No 442
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.20 E-value=8e-12 Score=124.45 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=83.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc--------eeeecccceeeeCCCCcCcch--
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE--------LTTLSSANHVELSPSDAGFQD-- 106 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-- 106 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++.......+.... +...++.+++.+.....+...
T Consensus 959 ~aLLG~NGAGKSTLLkiLaG-Ll~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~ 1037 (2272)
T TIGR01257 959 TAFLGHNGAGKTTTLSILTG-LLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEE 1037 (2272)
T ss_pred EEEECCCCChHHHHHHHHhc-CCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 66999999999999999998 7789999999998765311000000000 001111122221110011111
Q ss_pred -hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEe
Q 025758 107 -RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCC 167 (248)
Q Consensus 107 -~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t 167 (248)
...+.+.++.+ ....+..+|+ ..+++|+++||| .+||+..+..+++++.+...+..+|++|
T Consensus 1038 ~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltT 1117 (2272)
T TIGR01257 1038 AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMST 1117 (2272)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 11122223221 1122233442 458999999999 8999999999999999886555677777
Q ss_pred cCCCcccHHHhhhh
Q 025758 168 NSSSKVTEAIRSRC 181 (248)
Q Consensus 168 ~~~~~~~~~l~sR~ 181 (248)
|+.+ ....+.+|+
T Consensus 1118 Hdmd-ea~~laDrI 1130 (2272)
T TIGR01257 1118 HHMD-EADLLGDRI 1130 (2272)
T ss_pred CCHH-HHHHhCCEE
Confidence 7653 223444443
No 443
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.1e-11 Score=110.37 Aligned_cols=159 Identities=13% Similarity=0.228 Sum_probs=90.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----ccccccee------eec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELT------TLS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~ 90 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+. ....+-.+ ..+
T Consensus 13 il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 13 ALDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFG-IYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred eeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 4455555555554 366999999999999999998 6688899999888654311100 00000000 011
Q ss_pred ccceeeeCCC-CcC--cchh---HHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 91 SANHVELSPS-DAG--FQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 91 ~~~~~~~~~~-~~~--~~~~---~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
+.+++.+... ..+ .... ..+.+.++.+. ......+|+ ..+|+++|+||| ..+|+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 1122221110 001 0111 11223333221 111223442 448999999999 8999999
Q ss_pred HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
...+.+++.+... +..+|++||+.+. ...+.+|+.+
T Consensus 170 ~~~l~~~l~~l~~~g~tvii~tH~~~~-~~~~~d~i~~ 206 (491)
T PRK10982 170 VNHLFTIIRKLKERGCGIVYISHKMEE-IFQLCDEITI 206 (491)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEE
Confidence 9999999988743 3467777776544 3466677643
No 444
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.20 E-value=7e-11 Score=97.09 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=90.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--cccceeeecccceeeeC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--IDLELTTLSSANHVELS 98 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 98 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+.+|.+.+++..+....+... .......+.......+.
T Consensus 27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 27 VLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVG-LESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 4555555665553 477999999999999999998 668889999998865431111000 00000000000000000
Q ss_pred CCC-------------cCcch---hHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 99 PSD-------------AGFQD---RYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 99 ~~~-------------~~~~~---~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+.. ..... ...+.+.+..+ .......+|+ ..+|+++++||| ..||
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 000 00000 01122223221 1112223342 458999999999 7999
Q ss_pred HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
...+..+.+.+++... +..+|++|++.. ....+.+|+..+
T Consensus 184 ~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l 225 (268)
T PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVM 225 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEE
Confidence 9999999999988753 456777777754 444666776443
No 445
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=5.7e-11 Score=98.70 Aligned_cols=160 Identities=17% Similarity=0.227 Sum_probs=89.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec--c--C--Ccccccceeee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID--A--G--SRNIDLELTTL----- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~--~--~--~~~~~~~~~~~----- 89 (248)
+++.+...+..|. .+.|.||||+|||||++++++ +..+.+|.+.++|.++... . . .......+..-
T Consensus 26 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 26 ALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNG-LIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 4445555555553 367999999999999999998 6688889998888654310 0 0 00000000000
Q ss_pred ----cccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 90 ----SSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 90 ----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
++.+++.+.....+.... ..+.+.++.+ .......+|+ ..+|+++++||| ..||
T Consensus 103 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 182 (289)
T PRK13645 103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182 (289)
T ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 011111110000011110 1112222211 1111223332 448999999999 8999
Q ss_pred HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.....+++++.+..+ +..+|++||+.+ ....+.+|+..+
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l 224 (289)
T PRK13645 183 PKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVM 224 (289)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 9999999999987743 456777777765 345666777443
No 446
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.20 E-value=1.6e-11 Score=109.35 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceeeeccc-ce
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSSA-NH 94 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 94 (248)
+...+++.+...+.+|.. +.|.||||+|||||++++++ +..+.+|.+.+++.......... ............ ..
T Consensus 14 ~~~~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~G-~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (490)
T PRK10938 14 SDTKTLQLPSLTLNAGDS--WAFVGANGSGKSALARALAG-ELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDM 90 (490)
T ss_pred CCeeecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-cCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhh
Confidence 333456666666666543 66999999999999999998 66788898887665432110000 000000000000 00
Q ss_pred -------eeeCCCCc---CcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 95 -------VELSPSDA---GFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 95 -------~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
........ .......+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 170 (490)
T PRK10938 91 LSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS 170 (490)
T ss_pred cccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 00000000 000111222333222 2223334553 448999999999 8999999
Q ss_pred HHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758 147 QHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 147 ~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
...+.+++.+.... ..+|++||+... ...+.+|..
T Consensus 171 ~~~l~~~l~~~~~~g~tvii~tH~~~~-~~~~~d~v~ 206 (490)
T PRK10938 171 RQQLAELLASLHQSGITLVLVLNRFDE-IPDFVQFAG 206 (490)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhCCEEE
Confidence 99999999887543 467777776543 446667764
No 447
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=3.9e-11 Score=98.97 Aligned_cols=159 Identities=16% Similarity=0.283 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---cccccc--eee-------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLE--LTT------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~------- 88 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.++|.++...... ...... .+.
T Consensus 17 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 17 ALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNG-ILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 4445555555553 366999999999999999998 6688899999988765311000 000000 000
Q ss_pred ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758 89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ 147 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~ 147 (248)
.++.+++.+.....+... ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 011111111000000000 01122222221 1122223332 458999999999 89999999
Q ss_pred HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..+.+++.+... +..+|++|++.+. ...+.+|+..
T Consensus 174 ~~l~~~l~~l~~~~~til~vtH~~~~-~~~~~d~i~~ 209 (275)
T PRK13639 174 SQIMKLLYDLNKEGITIIISTHDVDL-VPVYADKVYV 209 (275)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence 999999988754 4567777777554 4466777743
No 448
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4.4e-11 Score=99.20 Aligned_cols=56 Identities=11% Similarity=0.228 Sum_probs=43.7
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+++++|+||| ..||+.....+.+.+.+...+..+|++||+...+ ..+.+|+.++
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~-~~~~d~i~~L 254 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQA-SRVSDYTMFF 254 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH-HHhCCEEEEE
Confidence 458999999999 8999999999999998876555677777765544 4667777544
No 449
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=4.8e-11 Score=93.21 Aligned_cols=182 Identities=15% Similarity=0.226 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc-----------CCcccccc
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-----------GSRNIDLE 85 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 85 (248)
+...+++.+...+..|. .+.+.||+|+|||||.|++.+ +..+..|.+.+++.+..... +..+..+.
T Consensus 15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lng-l~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhc-ccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 45555555555565554 466999999999999999999 78899999988886443111 11111111
Q ss_pred eee-ecccce-----eeeCC---CCcCcchhHHHHHHHHHH--------HhcCCCcCCC------------CCCeeEEEE
Q 025758 86 LTT-LSSANH-----VELSP---SDAGFQDRYVVQEVIKEM--------AKNRPIDTKG------------KRGFKVLVL 136 (248)
Q Consensus 86 ~~~-~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------------~~~~~viii 136 (248)
+.. .++..+ +++.+ .-.+..+.+.....+..+ +..+...+|+ .+++++|+-
T Consensus 92 Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILA 171 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171 (258)
T ss_pred cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEec
Confidence 100 000000 01100 011112222222222222 1122234443 458999999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh-----eeeecCCCHHHHHHHHHHH
Q 025758 137 NEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL-----NIRINSPTEEQIVKVLEFI 201 (248)
Q Consensus 137 DE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~-----~i~~~~~~~~~~~~il~~~ 201 (248)
||| ..|||.....+.+.+.+...+ +..++++-|.-++...+.+|+. .+.|+.|..+--.+.+..+
T Consensus 172 DEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~~~~i 243 (258)
T COG3638 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI 243 (258)
T ss_pred CCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHHHHHHH
Confidence 999 899999988888888776433 4555565566677778889983 5788888776555555543
No 450
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.20 E-value=3.5e-11 Score=108.16 Aligned_cols=143 Identities=15% Similarity=0.216 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 92 (248)
+++.+...+++|+ .+.+.||+|+||||+++++++ +..+..|.+.++|.++... .. ..+...+-..+..
T Consensus 350 vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~ 425 (529)
T TIGR02868 350 VLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTG-LLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR 425 (529)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH
Confidence 4555555555553 366999999999999999998 7899999999999765411 10 0000000011112
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+..++ .+.+.+.+.++. +...- ...+|+ -++++++++||+ ..+|
T Consensus 426 eNI~~g~~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD 502 (529)
T TIGR02868 426 DNLRLGRPD---ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLD 502 (529)
T ss_pred HHHhccCCC---CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 222221111 111122222221 11111 112332 448999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSS 170 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~ 170 (248)
+.....+.+.+++..++.++|++||++
T Consensus 503 ~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 503 AGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999876777888888863
No 451
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.3e-10 Score=94.66 Aligned_cols=56 Identities=13% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+++++++||| ..||+.....+.+.|.+...+..+|++|++... ...+.+|+.++
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~-~~~~~d~i~~l 221 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQ-AKKVSDRVAFF 221 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhcCEEEEE
Confidence 458999999999 899999999999999887655667777777653 44666776444
No 452
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1e-10 Score=96.35 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeeccC---Ccccccceeee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDAG---SRNIDLELTTL---- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---- 89 (248)
+.+.+...+.+|. .+.+.||||+||||+++++++.+.. +.+|.+.++|.+...... .......+..-
T Consensus 40 il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 40 ALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred EeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 4444444454443 3679999999999999999994331 468988888865431000 00000000000
Q ss_pred ---cccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 90 ---SSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
+..+++.+.....+... ...+.+.++.+ .......+|+ ..+++++++||| .
T Consensus 118 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 197 (272)
T PRK14236 118 FPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197 (272)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 11111111000001000 01122222221 1112233442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
.||+..+..+.+++.+......+|++|++... ...+.+|+..+.
T Consensus 198 gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~-~~~~~d~i~~l~ 241 (272)
T PRK14236 198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQ-AARVSDYTAFMY 241 (272)
T ss_pred cCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH-HHhhCCEEEEEE
Confidence 99999999999999887655667777777554 345667775443
No 453
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.3e-10 Score=94.65 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=87.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-----cccceecccceeeccCCc-ccccceeee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-----AEKVKVENKTWKIDAGSR-NIDLELTTL----- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~----- 89 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+. .|.+.+++.......... ........+
T Consensus 19 il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 19 VLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNR-MNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred EecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-ccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 4455555555553 367999999999999999998 44554 588888876542100000 000001000
Q ss_pred ----cccceeeeCCCCcCcchh----HHHHHHHHH---------HHhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758 90 ----SSANHVELSPSDAGFQDR----YVVQEVIKE---------MAKNRPIDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 90 ----~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~~~------------~~~~~viiiDE~- 139 (248)
+..+++.+.....+.... ..+.+.+.. ........+|+ ..+|+++++|||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 175 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 011111111100000000 011111111 11222333442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..||+.....+.+++.+......+|++||+...+. .+.+|...+
T Consensus 176 ~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~-~~~d~i~~l 219 (251)
T PRK14249 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAA-RASDWTGFL 219 (251)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hhCCEEEEE
Confidence 79999999999999988754566777777655444 555676444
No 454
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.8e-10 Score=97.60 Aligned_cols=174 Identities=19% Similarity=0.275 Sum_probs=115.6
Q ss_pred ccccccHHHHHHHHHHhh------------cCC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 13 DQVIVHQDIAQNLKKLVT------------EQD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~------------~~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
.++.|.......++..+. +-+ ..+++++||||+|||-+++++|++..+ ....+++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a---~~~~i~~--------- 251 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA---FLFLING--------- 251 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc---eeEeccc---------
Confidence 455666666666665542 112 234999999999999999999986521 1111111
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH----------HHHHH
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------EAQHS 149 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------~~~~~ 149 (248)
+..+...+.+ .....+..+....... -|.+++|||+|.+-+ .....
T Consensus 252 ------------peli~k~~gE----te~~LR~~f~~a~k~~--------~psii~IdEld~l~p~r~~~~~~e~Rv~sq 307 (693)
T KOG0730|consen 252 ------------PELISKFPGE----TESNLRKAFAEALKFQ--------VPSIIFIDELDALCPKREGADDVESRVVSQ 307 (693)
T ss_pred ------------HHHHHhcccc----hHHHHHHHHHHHhccC--------CCeeEeHHhHhhhCCcccccchHHHHHHHH
Confidence 1011111111 1112344444444322 278999999998854 23456
Q ss_pred HHHHHHHhc--CCeeEEEEecCCCcccHHHhh-hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758 150 LRRTMEKYS--ASCRLILCCNSSSKVTEAIRS-RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (248)
Q Consensus 150 ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s-R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g 223 (248)
++++++... ....+|.++|++..+.++++. |+ ..+.+.-|+..+..+++.....+-++. ++..+..++..+.|
T Consensus 308 lltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thG 384 (693)
T KOG0730|consen 308 LLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHG 384 (693)
T ss_pred HHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccc
Confidence 888888765 445677778999999999986 77 689999999999999999988887766 66778888877655
No 455
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.1e-10 Score=96.22 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=87.2
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------ecccc
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSAN 93 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 93 (248)
++.+...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.............+-.+. ....+
T Consensus 23 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 23 LRDASFTVPGGS--IAALVGVNGSGKSTLFKALMG-FVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 334444444442 477999999999999999998 6678899999888654210000000000000 00111
Q ss_pred eeeeCC-CCcC------cchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758 94 HVELSP-SDAG------FQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 94 ~~~~~~-~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~ 148 (248)
.+.+.. ...+ ......+.+.++.+ .......+|+ ..+|+++++||| ..||+....
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 179 (272)
T PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179 (272)
T ss_pred heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 111100 0000 00111122333222 1222334442 448999999999 899999999
Q ss_pred HHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhh
Q 025758 149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 149 ~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
.+.+++.+... +..+|++||+...+ ..+.+|+
T Consensus 180 ~l~~~L~~~~~~g~tviivsH~~~~~-~~~~d~v 212 (272)
T PRK15056 180 RIISLLRELRDEGKTMLVSTHNLGSV-TEFCDYT 212 (272)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEE
Confidence 99999988754 34677777765544 4566665
No 456
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.5e-11 Score=100.67 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=41.6
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
..+|+++|+||| ..||+..+..+.++|.+...+..+|++||+... ...+.+|.
T Consensus 216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~-i~~~~d~i 269 (305)
T PRK14264 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ-AARISDQT 269 (305)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhcCEE
Confidence 458999999999 899999999999999988666667777776554 34555663
No 457
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=4.5e-11 Score=100.78 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeeccC---Ccccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDAG---SRNIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----- 88 (248)
+++.+...+.+|. .+.|.||+|+||||+++++++.... +..|.+.++|.++..... ..........
T Consensus 97 ~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 97 VLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 3344444444443 3779999999999999999985432 468999988876531000 0000000000
Q ss_pred --ecccceeeeCCCCcCcchhHH----HHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 89 --LSSANHVELSPSDAGFQDRYV----VQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.+..+++.+.+...+...... +.+.++.. .......+|+ ..+++|+++||| .
T Consensus 175 ~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts 254 (329)
T PRK14257 175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254 (329)
T ss_pred CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 011111111110000000100 11112211 1222233442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+|+.....+.++|.+..++..+|++||+...+. .+.+|+.++
T Consensus 255 ~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~-~~~Driivl 297 (329)
T PRK14257 255 ALDPIATAKIEELILELKKKYSIIIVTHSMAQAQ-RISDETVFF 297 (329)
T ss_pred cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 9999999999999988776677788877765544 566777544
No 458
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.5e-10 Score=95.98 Aligned_cols=158 Identities=14% Similarity=0.180 Sum_probs=87.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeeccCC---cccccceeee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDAGS---RNIDLELTTL---- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---- 89 (248)
+++.+...+.+|. .+.|.||||+|||||++++++.+.. +..|.+.++|......... ......+..-
T Consensus 54 il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 54 ALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred eEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 4445555555443 3679999999999999999984321 5789998888654311000 0000000000
Q ss_pred ---cccceeeeCCCCcCcc--hhHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758 90 ---SSANHVELSPSDAGFQ--DRYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (248)
Q Consensus 90 ---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (248)
+..+++.+.....+.. ....+.+.++.+ ....+..+|+ ..+++++|+||| ..|
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~L 211 (285)
T PRK14254 132 FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211 (285)
T ss_pred CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 0011111000000000 011122223222 1222334442 448999999999 899
Q ss_pred CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 143 ~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
|+.....+.++|.+......+|++||+.. ....+.+|+
T Consensus 212 D~~~~~~l~~~L~~~~~~~tiii~tH~~~-~i~~~~dri 249 (285)
T PRK14254 212 DPVATSKIEDLIEELAEEYTVVIVTHNMQ-QAARISDKT 249 (285)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEE
Confidence 99999999999998865566777777755 444566664
No 459
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.18 E-value=5.4e-11 Score=88.02 Aligned_cols=52 Identities=25% Similarity=0.354 Sum_probs=40.3
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhc------------C-------CeeEEEEecCCC----cccHHHhhhh
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS------------A-------SCRLILCCNSSS----KVTEAIRSRC 181 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~------------~-------~~~~Il~t~~~~----~~~~~l~sR~ 181 (248)
++.+++|||++..++.....|+.++++.. . +..+|.++|... .+.+++++||
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 67899999999999999999999997521 1 256888888887 7999999996
No 460
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.4e-10 Score=94.35 Aligned_cols=162 Identities=14% Similarity=0.227 Sum_probs=89.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH--cCC--CcccceecccceeeccCC---cccccceeee----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV--FGP--GAEKVKVENKTWKIDAGS---RNIDLELTTL---- 89 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l--~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---- 89 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++.. ..+ ..|.+.++|.+....... ......+...
T Consensus 18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 18 ALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 3444444555543 36799999999999999999832 232 478888888755311000 0000000000
Q ss_pred ---cccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 90 ---SSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
+..+++.+.....+... ...+.+.++.+ .......+|+ ..+|+++++||| .
T Consensus 96 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 175 (250)
T PRK14245 96 FPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 01111111000000000 01122223322 1112223442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
.||+.....+.+.+.+...+..+|++|++... ...+.+|+..+.
T Consensus 176 ~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~-~~~~~d~v~~l~ 219 (250)
T PRK14245 176 ALDPISTAKVEELIHELKKDYTIVIVTHNMQQ-AARVSDKTAFFY 219 (250)
T ss_pred cCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhCCEEEEEE
Confidence 99999999999999987655667777776554 446778875443
No 461
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.18 E-value=8.9e-11 Score=99.10 Aligned_cols=160 Identities=15% Similarity=0.193 Sum_probs=92.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT-------- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------- 88 (248)
+++.+...+..|. .+.|.|++|+||||++++|++ +..+.+|.+.++|.++....... .....+..
T Consensus 36 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~G-l~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 36 AVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIG-LVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred EEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHC-CCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 3444444455543 366999999999999999998 67888999999887653111000 00001000
Q ss_pred --ecccceeeeCC--CCcCcch---hHHHHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758 89 --LSSANHVELSP--SDAGFQD---RYVVQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DKL 142 (248)
Q Consensus 89 --~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~l 142 (248)
.++.+++.+.. ...+... ...+.+.++. ....++..+|+ ..+|+++|+||+ ..|
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 00111111000 0000110 1112222322 23344455653 458999999999 899
Q ss_pred CHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 143 ~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
|...+..+++++.+... +..+|++||+.. ....+.+|+.++
T Consensus 193 D~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl 235 (331)
T PRK15079 193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVM 235 (331)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999988744 456777777754 444666776433
No 462
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.17 E-value=3e-09 Score=94.31 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=119.7
Q ss_pred CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (248)
.+.+++|.......+...+.. .....+++.|++||||+++|+.+...........+.+++.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~----------------- 198 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMA----------------- 198 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCC-----------------
Confidence 456788877666655554432 2233499999999999999999997432222222222221
Q ss_pred ecccceeeeCCCCcCcchhHHHHHHHHHHHhc---------CCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-
Q 025758 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS- 158 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~- 158 (248)
... . ......+ +... ...+.........++|||++.|+...+..|++++++..
T Consensus 199 ------------~~~--~-~~~~~~l--fg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~ 261 (469)
T PRK10923 199 ------------AIP--K-DLIESEL--FGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQF 261 (469)
T ss_pred ------------CCC--H-HHHHHHh--cCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcE
Confidence 110 0 0000000 0000 00011112344578999999999999999999998642
Q ss_pred ----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----HcC--C-CCC
Q 025758 159 ----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEG--L-QLP 210 (248)
Q Consensus 159 ----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~~~--~-~~~ 210 (248)
.++++|++|+... .+.+++..|+ ..|.+||+.. +++..++...+. +.+ + .++
T Consensus 262 ~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~ 341 (469)
T PRK10923 262 YRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLH 341 (469)
T ss_pred EeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 1346888877542 4667788887 4677777653 444444444433 222 2 478
Q ss_pred HHHHHHHHHH-ccccHHHHHHHHHHHhhhc
Q 025758 211 SGFATRLAEK-SNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 211 ~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 239 (248)
++++..|... ..||+|++.|.++.+....
T Consensus 342 ~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 342 PETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 9999999876 4899999999999988643
No 463
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.17 E-value=3.7e-11 Score=113.38 Aligned_cols=158 Identities=19% Similarity=0.241 Sum_probs=96.8
Q ss_pred CcccccccHH-HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758 11 TLDQVIVHQD-IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (248)
Q Consensus 11 ~~~~lig~~~-~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (248)
++....|... +++.+...++++..-+ +.||||+||||+.+++.+ ...+.+|.+.+.|......... .
T Consensus 569 ~L~k~y~~~~~Av~~ls~~V~~gecfg--LLG~NGAGKtT~f~mltG-~~~~t~G~a~i~g~~i~~~~~~---------~ 636 (885)
T KOG0059|consen 569 NLSKVYGGKDGAVRGLSFAVPPGECFG--LLGVNGAGKTTTFKMLTG-ETKPTSGEALIKGHDITVSTDF---------Q 636 (885)
T ss_pred ceeeeecchhhhhcceEEEecCCceEE--EecCCCCCchhhHHHHhC-CccCCcceEEEecCccccccch---------h
Confidence 3444444444 6666666666665545 999999999999999998 6788999998877655421111 0
Q ss_pred cccceeeeCCCCcCcchhHHHHHHHHHHHhcCC---------------------------CcCCC------------CCC
Q 025758 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP---------------------------IDTKG------------KRG 130 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~------------~~~ 130 (248)
.+...++|-|..-...+..+.+|.+.-.+.... ...++ .+.
T Consensus 637 ~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~ 716 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGD 716 (885)
T ss_pred hhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcC
Confidence 012224444433333233333333222221111 01111 458
Q ss_pred eeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhh
Q 025758 131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 131 ~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~ 181 (248)
|+++++||| .+|||.++..++.++.+..+++ -+|+|||. .+.-+++++|+
T Consensus 717 p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~ 768 (885)
T KOG0059|consen 717 PSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRT 768 (885)
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhh
Confidence 999999999 8999999999999999998887 45555554 44444555553
No 464
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.17 E-value=2.8e-09 Score=93.87 Aligned_cols=198 Identities=14% Similarity=0.140 Sum_probs=119.7
Q ss_pred CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758 11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (248)
Q Consensus 11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (248)
.+.+++|.....+.+...+.. ....++++.|++|+||+++|+.+-.........-+.+++
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c------------------ 198 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINC------------------ 198 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEEC------------------
Confidence 456688877766666665542 223448899999999999999998732212212222221
Q ss_pred ecccceeeeCCCCcCcchhHHHHHH-HHHHH----h--cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758 89 LSSANHVELSPSDAGFQDRYVVQEV-IKEMA----K--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~--~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--- 158 (248)
... .+ ..+... +.... . ....+.....+...++|||++.|++..+..|++.+++..
T Consensus 199 -----------~~~--~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~ 264 (445)
T TIGR02915 199 -----------AAI--PE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIER 264 (445)
T ss_pred -----------CCC--Ch-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEe
Confidence 111 00 001100 00000 0 000011113456689999999999999999999998642
Q ss_pred --------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----HcC---CCCCHH
Q 025758 159 --------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEG---LQLPSG 212 (248)
Q Consensus 159 --------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~~~---~~~~~~ 212 (248)
.++++|++|+... .+.+.|-.|+ ..|.+||+.. +++..++...+. +.+ ..++++
T Consensus 265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (445)
T TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD 344 (445)
T ss_pred CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 1357888877652 3455666776 4566666653 333333333332 222 458899
Q ss_pred HHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758 213 FATRLAEKS-NRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 213 ~~~~l~~~~-~g~~r~~~~~l~~~~~~~~ 240 (248)
++..+.... .||+|++.+.++.++..+.
T Consensus 345 a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 345 ALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 999998775 8999999999999986543
No 465
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.5e-11 Score=92.51 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=94.2
Q ss_pred cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----c---c--ccc
Q 025758 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----N---I--DLE 85 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----~---~--~~~ 85 (248)
+..+.+++.++.-+.+|.... +.||||+||||+.+.+++++ .+++|++.+++.+...-.+.. . . ...
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~a--ilGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~la 87 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLA--ILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLA 87 (259)
T ss_pred eecceeccCcceeccCCcEEE--EECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccc
Confidence 445666666666666776666 99999999999999999965 888899999887543111111 0 0 000
Q ss_pred eeeecccce--eeeCCCCcCcchhH---HHHHHHHH-----HHhcCCCcCCC------------------CCCeeEEEEe
Q 025758 86 LTTLSSANH--VELSPSDAGFQDRY---VVQEVIKE-----MAKNRPIDTKG------------------KRGFKVLVLN 137 (248)
Q Consensus 86 ~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~------------------~~~~~viiiD 137 (248)
+. .++.+- ++..+...+..+.+ ...+.+.. ++...-..+|+ ...++++++|
T Consensus 88 Fp-Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LD 166 (259)
T COG4559 88 FP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD 166 (259)
T ss_pred cc-eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEec
Confidence 00 001111 12223222222111 12222211 11111112221 3355899999
Q ss_pred CC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758 138 EV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 138 E~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
|+ ..||...|...+.+.+++... .-++++-++ -.+...+.+|...
T Consensus 167 EPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD-LNLAA~YaDrivl 213 (259)
T COG4559 167 EPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD-LNLAAQYADRIVL 213 (259)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc-chHHHHhhheeee
Confidence 99 799999999999999988554 455666555 4556677777743
No 466
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.9e-10 Score=94.09 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=44.2
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
..+|+++++||| ..||+.....+.+.+.+......+|++|++.+. ...+.+|..++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~-i~~~~d~i~~l~ 223 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQ-ATRVSDFTAFFS 223 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCeEEEEe
Confidence 458999999999 799999999999999887655667777776554 446667765554
No 467
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.17 E-value=1.3e-10 Score=105.78 Aligned_cols=146 Identities=15% Similarity=0.242 Sum_probs=87.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 92 (248)
+.+.+.-.+++|. .+.+.||+|+||||+++++++ +..+..|.+.++|.+........ .....+-..+..
T Consensus 358 il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 358 ALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTR-FYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred cccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHh-ccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 3444444444442 377999999999999999999 78999999999997654211100 000000111122
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCCC-----------cCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+...+ ..+.+.+.+.++. +....|. .+|+ ..+++++++||+ ..+|
T Consensus 435 ~Ni~~~~~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD 512 (582)
T PRK11176 435 NNIAYARTE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_pred HHHhcCCCC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 223332111 0111222222221 1111111 2332 348899999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
+.....+.+.+.+...+.++|++||+++
T Consensus 513 ~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 513 TESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 9999999999988766788999998874
No 468
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.17 E-value=1.5e-10 Score=105.01 Aligned_cols=156 Identities=13% Similarity=0.247 Sum_probs=93.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 92 (248)
+++.+...+++|. .+.+.||+|+||||+++++++ +..+.+|.+.++|.+........ .....+-..+..
T Consensus 355 il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g-~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 355 VLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTR-AWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431 (574)
T ss_pred ceecceEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence 4555555555543 467999999999999999998 77899999999997654211100 000000001112
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhc----------CCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKN----------RPIDTKG------------KRGFKVLVLNEV-DKLSR 144 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------~~~~~~~------------~~~~~viiiDE~-d~l~~ 144 (248)
+++.+...+ ...+.+.+.++. +... ....+|+ ..+++++++||+ ..+|+
T Consensus 432 ~Ni~~~~~~---~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~ 508 (574)
T PRK11160 432 DNLLLAAPN---ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA 508 (574)
T ss_pred HHhhcCCCc---cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 222222111 111122222222 2222 1112332 448999999999 89999
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 145 EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 145 ~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.....+.+.+.+...+.++|++||++..+. ..+|+.++
T Consensus 509 ~t~~~i~~~l~~~~~~~tviiitHr~~~~~--~~d~i~~l 546 (574)
T PRK11160 509 ETERQILELLAEHAQNKTVLMITHRLTGLE--QFDRICVM 546 (574)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecChhHHH--hCCEEEEE
Confidence 999999999998776678889999876543 24555433
No 469
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1.3e-10 Score=94.61 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=86.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc--C--CCcccceecccceeeccC---Ccccccceee-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--G--PGAEKVKVENKTWKIDAG---SRNIDLELTT----- 88 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~--~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----- 88 (248)
+.+.+...+.+|. .+.+.||||+||||+++++++.+. . +.+|.+.++|........ ..........
T Consensus 18 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 18 ILKNVNLDIPKNS--VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 3344444444443 367999999999999999998432 2 267888888865431000 0000000000
Q ss_pred --ecccceeeeCCCCcCcchhH----HHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 89 --LSSANHVELSPSDAGFQDRY----VVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
.+..+++.+.....+..... .+.+.++.+ .......+|+ ..+|+++++||| .
T Consensus 96 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~ 175 (250)
T PRK14266 96 FPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCS 175 (250)
T ss_pred CcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 01111111110000000001 111112111 1222233442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+|+.....+.+++.+...+..+|++|++...+ ..+.+|+..
T Consensus 176 gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~~~~~i~~ 217 (250)
T PRK14266 176 ALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQA-TRVSKYTSF 217 (250)
T ss_pred cCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-HhhcCEEEE
Confidence 999999999999999876556677777776554 355666543
No 470
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.16 E-value=1.2e-10 Score=91.91 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+.+.+...+.+|. .+.+.||||+||||+++++++ +..+..|.+.++|. +.+...... +...+..+++.+...
T Consensus 20 il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G-~~~~~~G~i~~~g~-i~~~~q~~~----l~~~t~~enl~~~~~ 91 (204)
T cd03250 20 TLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLG-ELEKLSGSVSVPGS-IAYVSQEPW----IQNGTIRENILFGKP 91 (204)
T ss_pred eeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhC-cCCCCCCeEEEcCE-EEEEecCch----hccCcHHHHhccCCC
Confidence 4555666666554 366999999999999999998 67888999988872 221111100 011122223332211
Q ss_pred CcCcchhHHHHHHH------HHHHh----------cCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 101 DAGFQDRYVVQEVI------KEMAK----------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 101 ~~~~~~~~~~~~~~------~~~~~----------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
. .. ....+.. +.+.. .....++. ..+|+++++||+ ..||+.....+.
T Consensus 92 ~---~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 167 (204)
T cd03250 92 F---DE-ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167 (204)
T ss_pred c---CH-HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 1 00 0111111 11111 11123332 458999999999 899999988888
Q ss_pred H-HHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 R-TMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~-~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+ ++..... ...+|++|++...+. . .+|+..+
T Consensus 168 ~~ll~~~~~~~~tvi~~sh~~~~~~-~-~d~i~~l 200 (204)
T cd03250 168 ENCILGLLLNNKTRILVTHQLQLLP-H-ADQIVVL 200 (204)
T ss_pred HHHHHHhccCCCEEEEEeCCHHHHh-h-CCEEEEE
Confidence 7 5665533 467788888865544 3 5555433
No 471
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.16 E-value=2.1e-10 Score=93.50 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=88.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCccc--ccceeeec-------
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNI--DLELTTLS------- 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------- 90 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++.. ..+..|.+.+++.+.....+.... .+.+....
T Consensus 22 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 22 ILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred eeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 4445555555443 36699999999999999999832 357789998888654321111110 00000000
Q ss_pred -ccceeeeCCC--C--cCc--chh----HHHHHHHHHH------HhcCCC-cCCC------------CCCeeEEEEeCC-
Q 025758 91 -SANHVELSPS--D--AGF--QDR----YVVQEVIKEM------AKNRPI-DTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 91 -~~~~~~~~~~--~--~~~--~~~----~~~~~~~~~~------~~~~~~-~~~~------------~~~~~viiiDE~- 139 (248)
...++.+... . ... ... ..+.+.+..+ ....+. .+|+ ..+|+++++|||
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 0001100000 0 000 000 1112222221 112222 2553 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 140 DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..||......+.+++.+... +..+|++||+...+..-..+|+..
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~ 224 (252)
T CHL00131 180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHV 224 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEE
Confidence 89999999999999987754 456788888766543222566643
No 472
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.5e-11 Score=107.66 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee---------
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT--------- 88 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------- 88 (248)
++.+...+..|. .+.|.||||+|||||++++++ +..+.+|.+.+++.++....+. ....+-.+.
T Consensus 279 l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 279 VRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFG-VDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred ccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 344444444443 366999999999999999998 6688899999988654210000 000011110
Q ss_pred ecccceeeeCCCC----c----Cc-ch---hHHHHHHHHHHHh------cCCCcCCC------------CCCeeEEEEeC
Q 025758 89 LSSANHVELSPSD----A----GF-QD---RYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNE 138 (248)
Q Consensus 89 ~~~~~~~~~~~~~----~----~~-~~---~~~~~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE 138 (248)
.++.+++.+.... . +. .. ...+.++++.+.- ..+..+|+ ..+|+++|+||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 1111112111100 0 00 00 1122333433221 12224442 45899999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 139 V-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 139 ~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
| ..||+.....+.++|.+... +..+|++||+.. ....+.+|+..
T Consensus 436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 9 89999999999999987644 356777777654 44467777643
No 473
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.15 E-value=1.2e-10 Score=105.82 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=90.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 92 (248)
+.+.+...+++|. .+.+.||+|+||||+++++++ +..+..|.+.++|.+....... ......+-..+..
T Consensus 350 ~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 350 GVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQR-VYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426 (585)
T ss_pred cccceeEEEcCCC--EEEEECCCCCCHHHHHHHHcc-CCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence 4455555555543 467999999999999999998 6788999999988654311110 0000000001111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHH-----HHH-h----------cCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIK-----EMA-K----------NRPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~----------~~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+..++. ......+.++ ... . .....+|+ ..+|+++++||+ ..+|
T Consensus 427 ~Ni~~~~~~~---~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD 503 (585)
T TIGR01192 427 ENIRLGREGA---TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503 (585)
T ss_pred HHHhcCCCCC---CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 2222221111 1111111111 111 1 11123332 448999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
......+.+.+++...+.++|++||+.+.+. ..+|...+
T Consensus 504 ~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~--~~d~i~~l 542 (585)
T TIGR01192 504 VETEARVKNAIDALRKNRTTFIIAHRLSTVR--NADLVLFL 542 (585)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEcChHHHH--cCCEEEEE
Confidence 9999999999988766678899999975542 24555444
No 474
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.15 E-value=2.3e-10 Score=106.06 Aligned_cols=155 Identities=17% Similarity=0.269 Sum_probs=92.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--------cccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--------IDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 92 (248)
+++.+...+++|. .+.+.||+|+||||+++++++ +..+..|.+.++|.++........ ....+-..+..
T Consensus 480 vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~g-l~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 480 ALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLG-LYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred ceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 4555555555543 477999999999999999998 789999999999976542111100 00000001111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+..++ .+.+.+.+.++. +....| ..+|+ ..+|+++++||+ ..+|
T Consensus 557 eNi~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD 633 (694)
T TIGR03375 557 DNIALGAPY---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633 (694)
T ss_pred HHHhCCCCC---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 222222111 111112222211 111111 12331 348899999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+.....+.+.+.+..++.++|++||+++.+ ...+|+.+
T Consensus 634 ~~te~~i~~~l~~~~~~~T~iiItHrl~~~--~~~D~iiv 671 (694)
T TIGR03375 634 NRSEERFKDRLKRWLAGKTLVLVTHRTSLL--DLVDRIIV 671 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HhCCEEEE
Confidence 999999999999887778899999997533 23455543
No 475
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.15 E-value=1e-10 Score=104.50 Aligned_cols=158 Identities=15% Similarity=0.236 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee------ec
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT------LS 90 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~ 90 (248)
+.+.+...+.+|. .+.|.||||+|||||++++++ +..+.+|.+.+++.++....+. ....+-.+. .+
T Consensus 19 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 19 ALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSG-NYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred EEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 4445555555543 366999999999999999998 6688899998888654311100 000000000 01
Q ss_pred ccceeeeCC--CCcC-cch---hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758 91 SANHVELSP--SDAG-FQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA 146 (248)
Q Consensus 91 ~~~~~~~~~--~~~~-~~~---~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~ 146 (248)
+.+++.+.. ...+ ... ...+.+.++.+. ...+..+|+ ..+|+++|+||| ..||+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 111121111 0001 001 112233333321 111223442 448999999999 8999999
Q ss_pred HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhh
Q 025758 147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
...+.+.+.+... +..+|++||+...+ ..+.+|+.
T Consensus 176 ~~~l~~~l~~~~~~g~tiiiitHd~~~~-~~~~d~i~ 211 (501)
T PRK11288 176 IEQLFRVIRELRAEGRVILYVSHRMEEI-FALCDAIT 211 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEEE
Confidence 9999999987743 35677777776544 46667763
No 476
>PRK13409 putative ATPase RIL; Provisional
Probab=99.15 E-value=1.9e-10 Score=104.11 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=80.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (248)
+.|.||||+||||+++++++ +..+..|.+.++ ..+.+....... ....++.+.+.+...... ......+.++.
T Consensus 368 v~l~G~NGsGKSTLlk~L~G-l~~p~~G~I~~~-~~i~y~~Q~~~~---~~~~tv~e~l~~~~~~~~--~~~~~~~~L~~ 440 (590)
T PRK13409 368 IGIVGPNGIGKTTFAKLLAG-VLKPDEGEVDPE-LKISYKPQYIKP---DYDGTVEDLLRSITDDLG--SSYYKSEIIKP 440 (590)
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCceEEEEe-eeEEEecccccC---CCCCcHHHHHHHHhhhcC--hHHHHHHHHHH
Confidence 77999999999999999998 667788877654 111111110000 000111111111000000 01112222222
Q ss_pred -----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHH
Q 025758 117 -----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEA 176 (248)
Q Consensus 117 -----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~ 176 (248)
.....+..+|+ ..+++++++||| .+||...+..+.++|.+... +..+|++||+.. ....
T Consensus 441 l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~ 519 (590)
T PRK13409 441 LQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDY 519 (590)
T ss_pred CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence 22334445553 458999999999 89999999999999998744 356777777754 4446
Q ss_pred Hhhhhhe
Q 025758 177 IRSRCLN 183 (248)
Q Consensus 177 l~sR~~~ 183 (248)
+.+|+.+
T Consensus 520 ~aDrviv 526 (590)
T PRK13409 520 ISDRLMV 526 (590)
T ss_pred hCCEEEE
Confidence 6777643
No 477
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.15 E-value=2.4e-10 Score=105.96 Aligned_cols=156 Identities=21% Similarity=0.273 Sum_probs=92.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 92 (248)
+.+.+...+++|. .+.+.|++|+||||+++++++ +..+..|.+.++|.++....... .....+-..+..
T Consensus 472 il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g-~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 472 VLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQR-LYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred ccccceEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 4555555555443 477999999999999999998 77899999999997654111100 000000011112
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+.... .+.+.+.+.++. +....| ..+|+ ..+|+++++||+ ..+|
T Consensus 549 eNi~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD 625 (694)
T TIGR01846 549 DNIALCNPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625 (694)
T ss_pred HHHhcCCCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 222221111 111112222211 111111 12331 348999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+.....+.+.+.+...+.++|++||+++.+. ..+|+.++
T Consensus 626 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~--~~d~ii~l 664 (694)
T TIGR01846 626 YESEALIMRNMREICRGRTVIIIAHRLSTVR--ACDRIIVL 664 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCChHHHH--hCCEEEEE
Confidence 9999999999998766778999999876542 25665443
No 478
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=2.9e-10 Score=93.35 Aligned_cols=56 Identities=9% Similarity=0.196 Sum_probs=43.5
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+++++++||| ..||......+.+++.+......+|++|++.+.+ ..+.+|+.++
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~-~~~~d~i~~l 233 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA-ARVSDYTAYM 233 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH-HHhCCEEEEE
Confidence 458999999999 8999999999999999876556677777775544 4566777544
No 479
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.14 E-value=6.8e-11 Score=106.74 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=41.4
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+++++||| ..||+.....+.++|.+.. ..+|++||+.. ....+.+|+..+
T Consensus 177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~-~~~~~~d~v~~l 231 (552)
T TIGR03719 177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRY-FLDNVAGWILEL 231 (552)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHH-HHHhhcCeEEEE
Confidence 458999999999 7999999999999998763 46777777654 444666776443
No 480
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.14 E-value=3.1e-10 Score=103.38 Aligned_cols=145 Identities=16% Similarity=0.220 Sum_probs=86.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 92 (248)
+++.+...+++|. .+.+.||+|+||||+++++++ +. +..|.+.++|.++..-.... .+...+-..+..
T Consensus 365 vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g-~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 365 LAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLG-FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 3344444444443 367999999999999999999 55 78899999997654211110 000000111122
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+..++ .+.+.+.+.++. +.... ...+|+ ..+++|+++||+ ..+|
T Consensus 441 eNI~~g~~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD 517 (588)
T PRK11174 441 DNVLLGNPD---ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517 (588)
T ss_pred HHhhcCCCC---CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 233332111 111122222221 11111 112332 347899999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
......+.+.+.+..++.++|++||+++.
T Consensus 518 ~~te~~i~~~l~~~~~~~TvIiItHrl~~ 546 (588)
T PRK11174 518 AHSEQLVMQALNAASRRQTTLMVTHQLED 546 (588)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecChHH
Confidence 99999999999988777789999999743
No 481
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.14 E-value=2e-10 Score=100.96 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+++.+...+..|. .+.|.||||+|||||++++++ +..+..|.+.++|........ .. .....+..+.+.+...
T Consensus 39 IL~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaG-Ll~P~sGeI~I~G~~~~i~~~--~~--l~~~lTV~EnL~l~~~ 111 (549)
T PRK13545 39 ALNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAG-VTMPNKGTVDIKGSAALIAIS--SG--LNGQLTGIENIELKGL 111 (549)
T ss_pred EEeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhC-CCCCCceEEEECCEeeeEEec--cc--cCCCCcHHHHHHhhhh
Confidence 3444444454443 366999999999999999998 668889999888753110000 00 0000111111111100
Q ss_pred CcCcchhH---HHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 101 DAGFQDRY---VVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 101 ~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
..+..... .+.++++. ........+|+ ..+|+++++||| ..||+.....+++.|.+...
T Consensus 112 ~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~ 191 (549)
T PRK13545 112 MMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE 191 (549)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 00111100 11122221 11222333442 447999999999 79999999999999988743
Q ss_pred -CeeEEEEecCCCcccHHHhhhhhee
Q 025758 160 -SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 160 -~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+..+|++||+.. ....+.+|+..+
T Consensus 192 ~G~TIIIVSHdl~-~i~~l~DrIivL 216 (549)
T PRK13545 192 QGKTIFFISHSLS-QVKSFCTKALWL 216 (549)
T ss_pred CCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 346777777654 445667776443
No 482
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.14 E-value=1.3e-10 Score=105.28 Aligned_cols=146 Identities=17% Similarity=0.263 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 92 (248)
+.+.+...+++|. .+.+.||+|+||||+++++++ +..+.+|.+.++|.++...... ......+-..+..
T Consensus 330 ~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 330 ALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQR-HFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred cccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 4444444554443 477999999999999999998 7789999999988754311100 0000000001112
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH------HHhc----------CCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE------MAKN----------RPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+...+ .......+.++. +... ....+|+ ..+++++++||+ ..+|
T Consensus 407 ~Ni~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 407 NNIALGRPD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred HHHhcCCCC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 222222111 111112222211 1111 1112332 448999999999 7999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
+.....+.+.+.+...+.++|++||+.+.
T Consensus 484 ~~~~~~i~~~l~~~~~~~tii~itH~~~~ 512 (569)
T PRK10789 484 GRTEHQILHNLRQWGEGRTVIISAHRLSA 512 (569)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence 99999999999887666778888888754
No 483
>PRK08181 transposase; Validated
Probab=99.14 E-value=2.3e-10 Score=93.44 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=74.4
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA 102 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (248)
.....|+..+ .+++|+||+|+|||++|.+++..+...+. .+ ...+..+.+......
T Consensus 97 ~~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~-~v--------------------~f~~~~~L~~~l~~a- 152 (269)
T PRK08181 97 AAGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGW-RV--------------------LFTRTTDLVQKLQVA- 152 (269)
T ss_pred HHHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCC-ce--------------------eeeeHHHHHHHHHHH-
Confidence 3444576543 46999999999999999999987632211 00 000000000000000
Q ss_pred CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC--CHHHHHHHHHHHHHhcCCeeEEEEecCCCc--------
Q 025758 103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSSK-------- 172 (248)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--~~~~~~~ll~~le~~~~~~~~Il~t~~~~~-------- 172 (248)
.......+.++.+ ..++++||||++.. +......|+.+++.......+|++||.+..
T Consensus 153 --~~~~~~~~~l~~l-----------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 153 --RRELQLESAIAKL-----------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPD 219 (269)
T ss_pred --HhCCcHHHHHHHH-----------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCC
Confidence 0000011122222 25679999999765 456677899999875445678888887741
Q ss_pred --ccHHHhhhh----heeeecCCCH
Q 025758 173 --VTEAIRSRC----LNIRINSPTE 191 (248)
Q Consensus 173 --~~~~l~sR~----~~i~~~~~~~ 191 (248)
+..++.||. ..+.|...+-
T Consensus 220 ~~~a~aildRL~h~~~~i~~~g~s~ 244 (269)
T PRK08181 220 PAMTLAAVDRLVHHATIFEMNVESY 244 (269)
T ss_pred ccchhhHHHhhhcCceEEecCCccc
Confidence 234555665 4677776543
No 484
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.13 E-value=2.5e-10 Score=93.35 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=88.4
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc-----eeeccCCcc---cccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-----WKIDAGSRN---IDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~ 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++ +..+..|.+.+++.+ +........ .......+...
T Consensus 21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 21 GCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSA-RLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred eeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 4444555555443 367999999999999999998 668889999888865 321000000 00001111000
Q ss_pred ceeeeCCC-----C-------cCc-c---hhHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeC
Q 025758 93 NHVELSPS-----D-------AGF-Q---DRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNE 138 (248)
Q Consensus 93 ~~~~~~~~-----~-------~~~-~---~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE 138 (248)
....+.+. . ... . ....+.+.++.+. ...+..+|+ ..+|+++++||
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00000000 0 000 0 0111222233221 122223442 45899999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 139 V-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 139 ~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
| ..||+.....+.+.+.+... +..+|++|++...+ ..+.+|+..+
T Consensus 178 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~-~~~~d~i~~l 225 (258)
T PRK11701 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLLAHRLLVM 225 (258)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH-HHhcCEEEEE
Confidence 9 89999999999999987643 45677777765444 3556776443
No 485
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.13 E-value=2.8e-10 Score=93.97 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+++.+...+..|. .+.|.||||+||||++++|++ +..+..|.+.+++. +.+....... +. .+..+++.+...
T Consensus 52 vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~G-l~~p~~G~I~i~g~-i~yv~q~~~l-~~---~tv~enl~~~~~ 123 (282)
T cd03291 52 VLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILG-ELEPSEGKIKHSGR-ISFSSQFSWI-MP---GTIKENIIFGVS 123 (282)
T ss_pred ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCE-EEEEeCcccc-cc---cCHHHHhhcccc
Confidence 3334444444443 366999999999999999998 66888898888763 1111111000 00 011111111110
Q ss_pred CcCcchhHHHHHHHH-----HHHhc-----------CCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 101 DAGFQDRYVVQEVIK-----EMAKN-----------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 101 ~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
.. .....+.++ ..... ....+|+ ..+|+++|+||| ..||+.....++
T Consensus 124 ~~----~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~ 199 (282)
T cd03291 124 YD----EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199 (282)
T ss_pred cC----HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 00 000011111 00000 0112331 447899999999 799999988888
Q ss_pred HH-HHHhcCCeeEEEEecCCCcccHHHhhhhh
Q 025758 152 RT-MEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 152 ~~-le~~~~~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
+. ++....+..+|++|++...+ . ..+|+.
T Consensus 200 ~~ll~~~~~~~tIiiisH~~~~~-~-~~d~i~ 229 (282)
T cd03291 200 ESCVCKLMANKTRILVTSKMEHL-K-KADKIL 229 (282)
T ss_pred HHHHHHhhCCCEEEEEeCChHHH-H-hCCEEE
Confidence 74 45554456788888887764 2 566763
No 486
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.13 E-value=1.1e-10 Score=94.78 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=85.1
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCcc--cccceeeeccc-----
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRN--IDLELTTLSSA----- 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----- 92 (248)
+.+.+...+.+|. .+.|.||||+||||+++++++.+ ..+..|.+.++|.+.....+... ..+....-...
T Consensus 16 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 16 ILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 4444544454443 36799999999999999999943 35788999888865431111000 00000000000
Q ss_pred ---ceeeeCCCC---c-C--cchh----HHHHHHHHHH------HhcCC-CcCCC------------CCCeeEEEEeCC-
Q 025758 93 ---NHVELSPSD---A-G--FQDR----YVVQEVIKEM------AKNRP-IDTKG------------KRGFKVLVLNEV- 139 (248)
Q Consensus 93 ---~~~~~~~~~---~-~--~~~~----~~~~~~~~~~------~~~~~-~~~~~------------~~~~~viiiDE~- 139 (248)
.+....... . . .... ..+.+.++.+ ..... ..+|+ ..+|+++++|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt 173 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 000000000 0 0 0000 0111111110 01111 13442 458999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHH-hhhhh
Q 025758 140 DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL 182 (248)
Q Consensus 140 d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l-~sR~~ 182 (248)
..||+.....+.+.+.+... +..+|++||+...+ ..+ .+|+.
T Consensus 174 ~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~-~~~~~d~i~ 217 (248)
T PRK09580 174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL-DYIKPDYVH 217 (248)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhhhCCEEE
Confidence 89999999999999987754 35677887876543 333 45553
No 487
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.13 E-value=4e-11 Score=107.09 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC--CcccceecccceeeccCC----cccccceee-----
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS----RNIDLELTT----- 88 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~----- 88 (248)
.+.+.+...+.+|. .+.|.||||+||||+++++++ +..+ ..|.+.++|.++...... ....+-.+.
T Consensus 15 ~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G-~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 15 KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred EeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 34555555555553 366999999999999999998 5454 689898888654311100 000000000
Q ss_pred -ecccceeeeCCCCc--C--cch---hHHHHHHHHHHHh------cCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758 89 -LSSANHVELSPSDA--G--FQD---RYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DK 141 (248)
Q Consensus 89 -~~~~~~~~~~~~~~--~--~~~---~~~~~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~ 141 (248)
.++.+++.+..... + ... ...+.+.++.+.- .....+|+ ..+|+++++||| ..
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~ 171 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSS 171 (500)
T ss_pred CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 01111111111000 0 000 1112233333211 11223442 448999999999 89
Q ss_pred CCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758 142 LSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 142 l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+|+.....+.++|.+.... ..+|++||+.. ....+.+|+.+
T Consensus 172 LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~ 213 (500)
T TIGR02633 172 LTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICV 213 (500)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 9999999999999887443 45677776654 44466677643
No 488
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.13 E-value=6.7e-11 Score=106.83 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=86.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc-ceeeccCCcccccceeeecccceeeeCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK-TWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
+++.+...+.+|. .+.|.||||+|||||++++++ +..+.+|.+.+++. .+.+....... -....++.+++.+..
T Consensus 339 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G-~~~p~~G~i~~~~~~~i~~v~q~~~~--~~~~~tv~e~l~~~~ 413 (556)
T PRK11819 339 LIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITG-QEQPDSGTIKIGETVKLAYVDQSRDA--LDPNKTVWEEISGGL 413 (556)
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCceEEEEEeCchhh--cCCCCCHHHHHHhhc
Confidence 4445554555443 366999999999999999998 66788888877432 11111111000 000011111111111
Q ss_pred CCcCcc-hhHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 100 SDAGFQ-DRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 100 ~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
...+.. ........++.+. ...+..+|+ ..+|+++|+||| .+||+.....+.++|.+..
T Consensus 414 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~- 492 (556)
T PRK11819 414 DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP- 492 (556)
T ss_pred ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 000000 0111222232221 112234442 458999999999 7999999999999999874
Q ss_pred CeeEEEEecCCCcccHHHhhhhhee
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|++||+.. ....+.+|+..+
T Consensus 493 -~tvi~vtHd~~-~~~~~~d~i~~l 515 (556)
T PRK11819 493 -GCAVVISHDRW-FLDRIATHILAF 515 (556)
T ss_pred -CeEEEEECCHH-HHHHhCCEEEEE
Confidence 35777777654 444666776444
No 489
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.12 E-value=2e-09 Score=78.86 Aligned_cols=27 Identities=52% Similarity=0.776 Sum_probs=23.2
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
.+++|+||+||||||+++.++..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 458999999999999999999866443
No 490
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.12 E-value=9.8e-11 Score=105.77 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+++|+||| ..||+.....+.+.+.+.. ..+|++||+.. ....+.+|+..+
T Consensus 179 ~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~-~~~~~~d~i~~l 233 (556)
T PRK11819 179 LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRY-FLDNVAGWILEL 233 (556)
T ss_pred hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHH-HHHhhcCeEEEE
Confidence 448999999999 8999999999999998864 46777777654 444666777443
No 491
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.12 E-value=6.3e-09 Score=92.15 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=83.2
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCC
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSP 189 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~ 189 (248)
+...++|||++.|+...+..|++++++.. .++.+|++|+... .+.+.+..|+ ..|++||+
T Consensus 228 ~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpL 307 (463)
T TIGR01818 228 DGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPL 307 (463)
T ss_pred CCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCc
Confidence 45679999999999999999999998642 1346788776552 3556777877 47888887
Q ss_pred C--HHHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758 190 T--EEQIVKVLEFIAKK----EG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 190 ~--~~~~~~il~~~~~~----~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~ 240 (248)
. .+++..++...+.+ .+ ..++++++..|.... .||+|++.+.++.++..+.
T Consensus 308 r~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 308 RERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred ccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 7 56666666554432 22 358899999998775 8999999999999886544
No 492
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.12 E-value=5.9e-09 Score=88.16 Aligned_cols=188 Identities=15% Similarity=0.160 Sum_probs=108.8
Q ss_pred cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee--e-----ccCCcccc-
Q 025758 12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--I-----DAGSRNID- 83 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~--~-----~~~~~~~~- 83 (248)
|.-++|++..+..|-...-+..+.++|+.|+.|+||||++|+++. |+.+... +. |++|. - .|..|...
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~-LLp~~~~-V~--gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALAD-LLPEIEV-VI--GCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHH-hCCccce-ec--CCCCCCCCCChhhhhHHHHhhc
Confidence 456789999999888777777888899999999999999999998 5443321 11 32222 0 01101000
Q ss_pred cceeeeccc-ceeeeCCCCcC-----cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 84 LELTTLSSA-NHVELSPSDAG-----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
.+...+... ..+.+.....+ +.+..+....++.-.+....++-.+.+..|+.+||+.-|+...++.|+..+++.
T Consensus 92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG 171 (423)
T COG1239 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEG 171 (423)
T ss_pred cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhC
Confidence 011111110 11111111111 111122233333211111223334667789999999999999999999999873
Q ss_pred c-----------CCeeEEEE-ecCCC--cccHHHhhhh-heeeecCC-CHHHHHHHHHHHHH
Q 025758 158 S-----------ASCRLILC-CNSSS--KVTEAIRSRC-LNIRINSP-TEEQIVKVLEFIAK 203 (248)
Q Consensus 158 ~-----------~~~~~Il~-t~~~~--~~~~~l~sR~-~~i~~~~~-~~~~~~~il~~~~~ 203 (248)
. .-..|+++ |-+|+ ++-+.|++|+ ..+...++ +.++...++.+...
T Consensus 172 ~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 172 VNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred CceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 1 11225554 33443 6999999997 56666555 46666777766544
No 493
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=7.1e-11 Score=106.17 Aligned_cols=156 Identities=22% Similarity=0.310 Sum_probs=88.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc-eeeccCCcccccceeeecccceeeeCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
+.+.+...+..|. .+.|.||||+|||||++++++ +..+..|.+.+++.. +.+......... ....++.+++....
T Consensus 334 ~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G-~~~p~~G~i~~~~~~~i~~~~q~~~~~~-~~~~t~~~~~~~~~ 409 (530)
T PRK15064 334 LFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVG-ELEPDSGTVKWSENANIGYYAQDHAYDF-ENDLTLFDWMSQWR 409 (530)
T ss_pred eecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCceEEEEEcccccccC-CCCCcHHHHHHHhc
Confidence 3444444444443 366999999999999999998 668888888776631 211111000000 00001111111100
Q ss_pred CCcCcchhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC
Q 025758 100 SDAGFQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~ 160 (248)
. .......+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+.+.+.+. .
T Consensus 410 ~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~ 485 (530)
T PRK15064 410 Q--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--E 485 (530)
T ss_pred c--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 0 001111233333332 1223334442 458999999999 899999999999999987 3
Q ss_pred eeEEEEecCCCcccHHHhhhhheee
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
..+|++||+.. ....+.+|+..+.
T Consensus 486 ~tvi~vsHd~~-~~~~~~d~i~~l~ 509 (530)
T PRK15064 486 GTLIFVSHDRE-FVSSLATRIIEIT 509 (530)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46777777754 4446667775543
No 494
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.12 E-value=5.9e-10 Score=85.52 Aligned_cols=52 Identities=12% Similarity=0.161 Sum_probs=39.8
Q ss_pred eeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 131 ~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
++++++||| ..+|+.....+.+.+.+... +..+|++||+...+ ...+|+..+
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~--~~~d~i~~l 161 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL--SSADWIIDF 161 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HhCCEEEEE
Confidence 789999999 89999999999999987643 45678888887543 345555444
No 495
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.12 E-value=3.9e-10 Score=102.66 Aligned_cols=154 Identities=18% Similarity=0.271 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 92 (248)
+++.+...+++|. .+.+.|++|+||||+++++++ +..+..|.+.++|.+........ .....+-..+..
T Consensus 350 iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 350 GVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQR-VFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426 (588)
T ss_pred eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence 4444444444443 378999999999999999998 77889999999997554111100 000000001112
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+..++ . ..+.+.+.++. ..... ...+|+ .++++|+++||| ..+|
T Consensus 427 ~Ni~~~~~~--~-~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD 503 (588)
T PRK13657 427 DNIRVGRPD--A-TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503 (588)
T ss_pred HHHhcCCCC--C-CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 222222111 1 11112222111 11111 112332 448999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhh
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
+.....+++.+.+..++.++|++||++..+ ...+|+.
T Consensus 504 ~~t~~~i~~~l~~~~~~~tvIiitHr~~~~--~~~D~ii 540 (588)
T PRK13657 504 VETEAKVKAALDELMKGRTTFIIAHRLSTV--RNADRIL 540 (588)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEecHHHH--HhCCEEE
Confidence 999999999998876677889999987432 2345543
No 496
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.12 E-value=5.5e-09 Score=92.36 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecC
Q 025758 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINS 188 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~ 188 (248)
.+..+++|||++.|++..+..|+..+++.. .+.++|++|+... .+.+.+..|+ ..|.+||
T Consensus 236 a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~pp 315 (457)
T PRK11361 236 ANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPP 315 (457)
T ss_pred CCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCC
Confidence 345689999999999999999999997532 2357888887552 3555566666 3556666
Q ss_pred CC--HHHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758 189 PT--EEQIVKVLEFIAKK----EG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 189 ~~--~~~~~~il~~~~~~----~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~ 240 (248)
+. .+++..++...+.+ .+ ..+++++++.+.... .||+|++.+.++.++....
T Consensus 316 LreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 316 LRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred hhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 54 23344333333222 12 358899999998765 8999999999999886543
No 497
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.12 E-value=4.4e-10 Score=83.76 Aligned_cols=139 Identities=20% Similarity=0.326 Sum_probs=83.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----ccccc-----ceee---ecccceeeeCCCCcC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDL-----ELTT---LSSANHVELSPSDAG 103 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~---~~~~~~~~~~~~~~~ 103 (248)
+-++||+|+||||+.-.+|+ +..+++|.+++.|.+....... +.... ++.. .....++.+..+-.+
T Consensus 39 vaiVG~SGSGKSTLl~vlAG-Ld~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g 117 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAG-LDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG 117 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhc-CCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence 66999999999999999998 8999999999998755311110 00000 1111 111223333222222
Q ss_pred ---cchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh--cCC
Q 025758 104 ---FQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY--SAS 160 (248)
Q Consensus 104 ---~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~--~~~ 160 (248)
........+.+... ...+|..+++ ...|+|+|-||| ..+|......+..++=.. ...
T Consensus 118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G 197 (228)
T COG4181 118 ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG 197 (228)
T ss_pred CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC
Confidence 11222334444332 3456667774 457999999999 789887766666555332 345
Q ss_pred eeEEEEecCCCcccHHHhhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~ 181 (248)
++.|+.|+++ .+..||
T Consensus 198 ~TlVlVTHD~-----~LA~Rc 213 (228)
T COG4181 198 TTLVLVTHDP-----QLAARC 213 (228)
T ss_pred ceEEEEeCCH-----HHHHhh
Confidence 6788998874 455666
No 498
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.12 E-value=3.1e-10 Score=102.10 Aligned_cols=146 Identities=17% Similarity=0.236 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--------cccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--------IDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 92 (248)
+++.+...+++|. .+.++||+|+||||+++++++ +..+..|.+.++|.+......... ....+-..+..
T Consensus 337 il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 337 ALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLG-FVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred cccceeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 4455555555543 367999999999999999998 788999999999976542211100 00000001111
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHH-----HHhc-----------CCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKN-----------RPIDTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.+..+.. ..+...+.++. +... ....+|+ ..+++++++||+ ..+|
T Consensus 414 ~Ni~~~~~~~---~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD 490 (529)
T TIGR02857 414 ENIRLARPDA---SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490 (529)
T ss_pred HHHhccCCCC---CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 2222211110 11112222211 1111 1123332 447899999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
+.....+.+.+.+..++.++|++||+.+.
T Consensus 491 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 519 (529)
T TIGR02857 491 AETEALVTEALRALAQGRTVLLVTHRLAL 519 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 99999999999987777789999998743
No 499
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.7e-10 Score=103.01 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-c-------cccceeeeccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N-------IDLELTTLSSA 92 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~ 92 (248)
+.+.+...+++|+. +.+.||+|+||||+|..+-+ +..|.+|.+.+||.++..-.+.. . +..-+-..++.
T Consensus 483 Vlk~lsfti~pGe~--vALVGPSGsGKSTiasLL~r-fY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEV--VALVGPSGSGKSTIASLLLR-FYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred hhcCceeeeCCCCE--EEEECCCCCCHHHHHHHHHH-hcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 66677777777754 45999999999999999998 89999999999998765211110 0 00001111234
Q ss_pred ceeeeCCCCcCcchhHHHHHHH-----HHHHhcCCC-----------cCCC------------CCCeeEEEEeCC-CCCC
Q 025758 93 NHVELSPSDAGFQDRYVVQEVI-----KEMAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLS 143 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~ 143 (248)
+++.|..+.... +.+.+.. ..+....|. .+++ -.+|+|+||||+ ..||
T Consensus 560 eNI~YG~~~~t~---e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALD 636 (716)
T KOG0058|consen 560 ENIAYGLDNATD---EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALD 636 (716)
T ss_pred HHHhcCCCCCCH---HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcc
Confidence 455555542221 2222211 112111121 2332 348999999999 7899
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCCCcccH
Q 025758 144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (248)
Q Consensus 144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~ 175 (248)
.+....+-+.+++..++.++|+|+|+...+..
T Consensus 637 aeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~ 668 (716)
T KOG0058|consen 637 AESEYLVQEALDRLMQGRTVLVIAHRLSTVRH 668 (716)
T ss_pred hhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh
Confidence 88888888888887777889999998765443
No 500
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.11 E-value=3.3e-10 Score=92.25 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+++++++||| ..||+.....+.+++.+... +..+|++||+.. ....+.+|+..+
T Consensus 155 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l 212 (255)
T cd03236 155 ARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL 212 (255)
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 347899999999 89999999999999987754 356777777654 445666776444
Done!