Query 025758
Match_columns 248
No_of_seqs 124 out of 1719
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_E Activator 1 40 kDa subu 100.0 7.2E-39 2.5E-43 271.9 24.4 241 1-244 2-250 (354)
2 1sxj_C Activator 1 40 kDa subu 100.0 1.4E-33 4.9E-38 238.2 21.1 207 1-239 13-219 (340)
3 3u61_B DNA polymerase accessor 100.0 1.7E-33 5.8E-38 236.2 19.7 207 1-247 14-230 (324)
4 2chq_A Replication factor C sm 100.0 6E-33 2E-37 231.8 14.1 210 1-243 5-215 (319)
5 1iqp_A RFCS; clamp loader, ext 100.0 1.4E-32 4.7E-37 230.4 15.7 208 1-240 13-220 (327)
6 1sxj_D Activator 1 41 kDa subu 100.0 6.5E-32 2.2E-36 228.7 18.9 210 1-238 25-241 (353)
7 1sxj_B Activator 1 37 kDa subu 100.0 1.8E-31 6E-36 223.3 17.7 208 1-239 9-216 (323)
8 2chg_A Replication factor C sm 100.0 2E-30 6.9E-35 205.1 20.3 211 1-243 5-215 (226)
9 1jr3_A DNA polymerase III subu 100.0 2.6E-30 8.9E-35 220.4 20.6 222 2-238 5-227 (373)
10 1njg_A DNA polymerase III subu 100.0 2.9E-28 1E-32 195.0 20.3 224 2-240 12-236 (250)
11 3pvs_A Replication-associated 100.0 9E-29 3.1E-33 215.1 17.0 197 2-240 15-223 (447)
12 1a5t_A Delta prime, HOLB; zinc 100.0 7.5E-28 2.6E-32 202.6 19.8 203 16-236 5-209 (334)
13 1sxj_A Activator 1 95 kDa subu 100.0 1.1E-28 3.9E-33 218.8 15.6 209 1-245 27-265 (516)
14 3pfi_A Holliday junction ATP-d 99.9 5.8E-26 2E-30 191.3 19.3 190 2-236 18-231 (338)
15 3uk6_A RUVB-like 2; hexameric 99.9 4.4E-26 1.5E-30 194.1 18.5 233 2-239 32-310 (368)
16 1hqc_A RUVB; extended AAA-ATPa 99.9 1.9E-24 6.4E-29 180.9 22.4 194 2-239 1-218 (324)
17 2c9o_A RUVB-like 1; hexameric 99.9 3.4E-24 1.2E-28 187.4 20.9 108 131-239 296-417 (456)
18 1in4_A RUVB, holliday junction 99.9 2.6E-24 8.8E-29 181.1 19.4 190 3-237 15-228 (334)
19 2gno_A DNA polymerase III, gam 99.9 2E-24 6.8E-29 179.0 16.5 174 17-234 1-175 (305)
20 3bos_A Putative DNA replicatio 99.9 1E-23 3.5E-28 168.7 17.4 194 2-239 16-224 (242)
21 3vfd_A Spastin; ATPase, microt 99.9 1.2E-22 4.1E-27 174.3 18.6 198 2-236 104-330 (389)
22 3b9p_A CG5977-PA, isoform A; A 99.9 1.8E-22 6.2E-27 167.0 18.2 198 2-236 10-237 (297)
23 3eie_A Vacuolar protein sortin 99.9 8.7E-23 3E-27 170.9 15.6 198 2-236 7-232 (322)
24 3syl_A Protein CBBX; photosynt 99.9 8.4E-23 2.9E-27 169.8 15.4 192 14-238 32-261 (309)
25 1fnn_A CDC6P, cell division co 99.9 1.1E-21 3.9E-26 167.7 21.0 219 2-239 9-254 (389)
26 2qp9_X Vacuolar protein sortin 99.9 9.9E-22 3.4E-26 166.5 20.2 199 2-237 40-266 (355)
27 3d8b_A Fidgetin-like protein 1 99.9 1E-21 3.4E-26 166.7 17.6 197 3-236 74-299 (357)
28 2v1u_A Cell division control p 99.9 9.6E-22 3.3E-26 167.8 16.2 218 3-239 12-256 (387)
29 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.2E-20 4.1E-25 157.8 21.8 198 3-236 2-227 (322)
30 1lv7_A FTSH; alpha/beta domain 99.9 2.9E-21 9.9E-26 156.6 17.3 201 2-240 1-233 (257)
31 2z4s_A Chromosomal replication 99.9 1.8E-21 6E-26 169.3 16.0 195 11-239 103-313 (440)
32 4fcw_A Chaperone protein CLPB; 99.9 7.4E-22 2.5E-26 164.2 13.0 202 13-238 17-277 (311)
33 2zan_A Vacuolar protein sortin 99.9 9.7E-21 3.3E-25 164.9 19.7 198 3-236 124-349 (444)
34 1l8q_A Chromosomal replication 99.9 7.5E-21 2.6E-25 159.2 16.7 191 10-238 8-214 (324)
35 4b4t_J 26S protease regulatory 99.9 5.6E-20 1.9E-24 155.9 21.8 197 4-238 139-368 (405)
36 3te6_A Regulatory protein SIR3 99.9 1E-20 3.5E-25 156.7 16.5 200 22-240 33-287 (318)
37 1ofh_A ATP-dependent HSL prote 99.9 3E-21 1E-25 160.3 12.4 193 14-236 16-270 (310)
38 2qz4_A Paraplegin; AAA+, SPG7, 99.9 5.6E-20 1.9E-24 149.1 19.4 195 9-240 2-230 (262)
39 3h4m_A Proteasome-activating n 99.9 9.5E-21 3.2E-25 155.7 15.0 198 4-239 8-238 (285)
40 4b4t_I 26S protease regulatory 99.8 6.8E-20 2.3E-24 155.9 19.4 197 3-238 172-402 (437)
41 2qby_B CDC6 homolog 3, cell di 99.8 1.3E-20 4.4E-25 161.0 15.1 217 2-240 12-253 (384)
42 4b4t_H 26S protease regulatory 99.8 4.2E-19 1.4E-23 152.4 21.3 196 4-237 200-428 (467)
43 4b4t_M 26S protease regulatory 99.8 2.5E-19 8.5E-24 154.0 19.3 196 4-237 172-400 (434)
44 2qby_A CDC6 homolog 1, cell di 99.8 5.8E-20 2E-24 156.6 15.2 218 3-239 13-252 (386)
45 1g8p_A Magnesium-chelatase 38 99.8 2.9E-20 9.8E-25 157.0 12.3 232 5-239 16-302 (350)
46 3pxg_A Negative regulator of g 99.8 3E-20 1E-24 162.8 12.6 198 2-237 169-383 (468)
47 4b4t_L 26S protease subunit RP 99.8 8.3E-19 2.9E-23 150.8 21.2 193 7-237 175-400 (437)
48 3m6a_A ATP-dependent protease 99.8 3.9E-20 1.3E-24 164.7 12.7 198 12-238 80-314 (543)
49 4b4t_K 26S protease regulatory 99.8 8.9E-19 3.1E-23 150.4 20.5 195 5-237 164-392 (428)
50 2r44_A Uncharacterized protein 99.8 1.4E-20 4.7E-25 158.1 8.1 202 2-238 16-276 (331)
51 2ce7_A Cell division protein F 99.8 6E-19 2.1E-23 153.7 18.5 198 3-239 5-236 (476)
52 1jbk_A CLPB protein; beta barr 99.8 2.9E-20 9.8E-25 143.3 8.8 171 2-198 11-194 (195)
53 3cf0_A Transitional endoplasmi 99.8 4.7E-19 1.6E-23 146.8 14.8 195 4-236 6-233 (301)
54 2bjv_A PSP operon transcriptio 99.8 4E-18 1.4E-22 138.6 19.5 205 10-239 3-240 (265)
55 1r6b_X CLPA protein; AAA+, N-t 99.8 1.3E-18 4.3E-23 161.1 17.5 197 14-237 459-713 (758)
56 1jr3_D DNA polymerase III, del 99.8 1.1E-18 3.6E-23 147.3 15.2 175 25-238 9-191 (343)
57 3pxi_A Negative regulator of g 99.8 9E-19 3.1E-23 162.0 16.1 187 13-237 491-722 (758)
58 1qvr_A CLPB protein; coiled co 99.8 6.7E-19 2.3E-23 164.6 14.8 205 2-238 159-391 (854)
59 3pxi_A Negative regulator of g 99.8 1E-18 3.6E-23 161.5 13.7 198 2-237 169-383 (758)
60 1qvr_A CLPB protein; coiled co 99.8 8.1E-19 2.8E-23 164.1 12.3 201 13-237 558-817 (854)
61 3k1j_A LON protease, ATP-depen 99.8 1.7E-18 5.9E-23 156.2 13.3 233 4-239 32-355 (604)
62 2p65_A Hypothetical protein PF 99.8 1.2E-19 4E-24 139.3 4.6 163 2-190 11-187 (187)
63 1r6b_X CLPA protein; AAA+, N-t 99.8 1.3E-18 4.6E-23 160.9 12.5 209 2-237 175-407 (758)
64 1um8_A ATP-dependent CLP prote 99.8 2.1E-18 7.3E-23 147.2 12.1 194 14-238 22-338 (376)
65 2r62_A Cell division protease 99.8 1.1E-19 3.8E-24 148.0 3.6 198 5-240 3-234 (268)
66 3hu3_A Transitional endoplasmi 99.8 8.3E-18 2.8E-22 147.5 14.9 196 6-239 197-422 (489)
67 1ojl_A Transcriptional regulat 99.8 1.2E-16 4.1E-21 132.5 20.3 201 13-240 2-236 (304)
68 2dhr_A FTSH; AAA+ protein, hex 99.8 1.1E-17 3.7E-22 146.7 14.5 198 3-240 22-252 (499)
69 1ixz_A ATP-dependent metallopr 99.7 3.7E-17 1.3E-21 132.1 15.6 198 3-239 6-236 (254)
70 1d2n_A N-ethylmaleimide-sensit 99.7 2.9E-17 1E-21 134.0 13.7 183 13-239 33-249 (272)
71 1iy2_A ATP-dependent metallopr 99.7 2.5E-16 8.7E-21 128.9 18.3 196 5-239 32-260 (278)
72 3cf2_A TER ATPase, transitiona 99.7 1.4E-16 4.9E-21 146.0 13.5 191 7-235 198-418 (806)
73 3hws_A ATP-dependent CLP prote 99.7 5.6E-17 1.9E-21 137.7 8.2 194 15-239 17-322 (363)
74 1w5s_A Origin recognition comp 99.7 1.2E-15 4.1E-20 131.2 14.0 214 5-237 17-271 (412)
75 3ec2_A DNA replication protein 99.6 1.7E-15 5.7E-20 116.0 12.2 134 4-173 1-146 (180)
76 2x8a_A Nuclear valosin-contain 99.6 8.9E-15 3E-19 119.4 16.6 193 7-236 4-230 (274)
77 3cf2_A TER ATPase, transitiona 99.6 4.1E-16 1.4E-20 143.0 9.1 178 8-223 472-681 (806)
78 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3E-15 1E-19 131.3 13.9 197 13-239 22-266 (500)
79 3t15_A Ribulose bisphosphate c 99.6 1.6E-14 5.5E-19 119.0 16.1 152 36-223 38-217 (293)
80 1g41_A Heat shock protein HSLU 99.6 1.4E-14 4.9E-19 124.7 14.3 108 130-237 250-405 (444)
81 3n70_A Transport activator; si 99.6 3.8E-14 1.3E-18 104.7 11.6 133 13-189 1-144 (145)
82 3f9v_A Minichromosome maintena 99.5 6.7E-15 2.3E-19 132.1 7.2 195 13-240 295-568 (595)
83 1ypw_A Transitional endoplasmi 99.5 7.6E-14 2.6E-18 129.5 14.1 181 5-223 196-405 (806)
84 3fvq_A Fe(3+) IONS import ATP- 99.5 1.2E-14 4.1E-19 122.1 6.3 146 36-183 32-211 (359)
85 2yyz_A Sugar ABC transporter, 99.5 1.6E-14 5.3E-19 121.7 6.8 145 36-183 31-206 (359)
86 1ypw_A Transitional endoplasmi 99.5 1E-15 3.5E-20 141.9 -1.8 162 6-204 470-663 (806)
87 3rlf_A Maltose/maltodextrin im 99.5 1.7E-14 6E-19 121.9 5.7 134 36-183 31-206 (381)
88 2it1_A 362AA long hypothetical 99.5 3.5E-14 1.2E-18 119.7 7.5 132 37-182 32-205 (362)
89 1g29_1 MALK, maltose transport 99.5 5.2E-14 1.8E-18 119.2 8.3 133 37-183 32-212 (372)
90 2onk_A Molybdate/tungstate ABC 99.5 1.7E-14 5.7E-19 115.4 4.9 147 35-184 25-200 (240)
91 3tif_A Uncharacterized ABC tra 99.5 8.9E-14 3E-18 110.9 9.0 146 36-184 33-218 (235)
92 3co5_A Putative two-component 99.5 1E-13 3.6E-18 102.1 8.7 128 14-189 5-142 (143)
93 2kjq_A DNAA-related protein; s 99.5 1.2E-13 4.2E-18 102.3 8.8 122 8-182 12-140 (149)
94 1z47_A CYSA, putative ABC-tran 99.5 8.6E-14 2.9E-18 116.9 7.8 144 37-183 44-218 (355)
95 1vpl_A ABC transporter, ATP-bi 99.5 2.6E-14 8.7E-19 115.3 4.4 134 37-183 44-218 (256)
96 1v43_A Sugar-binding transport 99.5 5.6E-14 1.9E-18 118.9 6.5 145 36-183 39-214 (372)
97 3tui_C Methionine import ATP-b 99.5 5.9E-14 2E-18 118.0 6.4 138 37-183 57-236 (366)
98 3d31_A Sulfate/molybdate ABC t 99.4 5E-14 1.7E-18 118.2 5.3 134 36-183 28-200 (348)
99 2olj_A Amino acid ABC transpor 99.4 1.8E-13 6.3E-18 110.7 8.4 145 37-184 53-232 (263)
100 2pcj_A ABC transporter, lipopr 99.4 7.2E-14 2.4E-18 110.7 5.8 139 37-184 33-212 (224)
101 1g6h_A High-affinity branched- 99.4 1.2E-13 4.3E-18 111.5 6.9 155 25-183 26-225 (257)
102 4g1u_C Hemin import ATP-bindin 99.4 6.8E-14 2.3E-18 113.5 5.1 158 23-184 28-221 (266)
103 2ff7_A Alpha-hemolysin translo 99.4 1.7E-13 6E-18 110.0 7.4 141 37-183 38-215 (247)
104 1ji0_A ABC transporter; ATP bi 99.4 1.2E-13 4.1E-18 110.5 6.0 146 37-184 35-212 (240)
105 3gfo_A Cobalt import ATP-bindi 99.4 2.6E-13 8.7E-18 110.5 7.9 155 26-184 28-217 (275)
106 1oxx_K GLCV, glucose, ABC tran 99.4 5.9E-14 2E-18 118.1 3.9 145 37-183 34-213 (353)
107 1sgw_A Putative ABC transporte 99.4 2.5E-13 8.4E-18 106.6 6.9 140 37-182 38-204 (214)
108 1b0u_A Histidine permease; ABC 99.4 1.8E-13 6E-18 110.9 6.2 146 37-184 35-226 (262)
109 1ye8_A Protein THEP1, hypothet 99.4 2.3E-12 8E-17 98.3 11.9 68 130-199 99-173 (178)
110 2qen_A Walker-type ATPase; unk 99.4 9.7E-12 3.3E-16 104.3 16.8 219 1-233 1-247 (350)
111 2yz2_A Putative ABC transporte 99.4 6.3E-13 2.1E-17 107.9 8.4 146 37-184 36-211 (266)
112 2ixe_A Antigen peptide transpo 99.4 3E-13 1E-17 110.0 6.3 145 36-183 47-228 (271)
113 3dzd_A Transcriptional regulat 99.4 3.7E-11 1.3E-15 101.9 19.0 201 13-240 129-362 (368)
114 2qi9_C Vitamin B12 import ATP- 99.4 1E-13 3.4E-18 111.4 2.6 144 36-184 28-206 (249)
115 2pjz_A Hypothetical protein ST 99.4 1.7E-12 5.7E-17 105.1 9.8 130 36-183 32-198 (263)
116 1ny5_A Transcriptional regulat 99.4 7.4E-11 2.5E-15 100.8 19.2 195 12-240 136-371 (387)
117 3nh6_A ATP-binding cassette SU 99.4 2.3E-13 7.8E-18 112.3 3.3 141 37-183 83-260 (306)
118 2w58_A DNAI, primosome compone 99.3 1.2E-12 4E-17 101.9 5.9 58 3-60 15-80 (202)
119 1u0j_A DNA replication protein 99.3 1.3E-11 4.6E-16 99.1 11.8 136 21-210 89-258 (267)
120 2d2e_A SUFC protein; ABC-ATPas 99.3 9.6E-13 3.3E-17 105.9 4.9 146 37-183 32-216 (250)
121 1mv5_A LMRA, multidrug resista 99.3 2.3E-13 7.9E-18 109.1 1.2 143 37-184 31-210 (243)
122 2ghi_A Transport protein; mult 99.3 1.7E-12 5.9E-17 105.0 6.2 141 36-183 48-225 (260)
123 2cbz_A Multidrug resistance-as 99.3 1.4E-12 4.9E-17 104.0 4.9 140 36-184 33-201 (237)
124 2nq2_C Hypothetical ABC transp 99.3 5E-12 1.7E-16 101.8 8.0 143 37-185 34-203 (253)
125 2pze_A Cystic fibrosis transme 99.3 2.8E-12 9.4E-17 101.9 6.3 135 37-183 37-201 (229)
126 3gd7_A Fusion complex of cysti 99.3 9.3E-13 3.2E-17 112.1 3.7 140 36-183 49-225 (390)
127 2ihy_A ABC transporter, ATP-bi 99.3 6.3E-13 2.2E-17 108.5 2.4 146 37-184 50-236 (279)
128 3b5x_A Lipid A export ATP-bind 99.3 3.9E-12 1.3E-16 114.3 6.7 158 20-184 357-551 (582)
129 2fna_A Conserved hypothetical 99.2 2.6E-10 9E-15 95.6 15.9 209 9-234 9-252 (357)
130 3upu_A ATP-dependent DNA helic 99.2 5.4E-11 1.9E-15 103.9 11.5 59 2-61 13-72 (459)
131 2zu0_C Probable ATP-dependent 99.2 9.3E-12 3.2E-16 101.0 6.0 145 37-182 49-236 (267)
132 4a82_A Cystic fibrosis transme 99.2 8.6E-12 2.9E-16 111.9 5.5 141 37-183 370-547 (578)
133 3qf4_B Uncharacterized ABC tra 99.2 1.1E-11 3.8E-16 111.6 5.9 143 36-184 383-562 (598)
134 2bbs_A Cystic fibrosis transme 99.2 1.1E-11 3.7E-16 101.6 5.4 134 37-183 67-230 (290)
135 1tue_A Replication protein E1; 99.2 3.4E-11 1.2E-15 92.7 7.7 119 21-190 44-180 (212)
136 2qgz_A Helicase loader, putati 99.2 9.7E-12 3.3E-16 103.0 4.8 56 4-59 115-177 (308)
137 3b60_A Lipid A export ATP-bind 99.2 1.2E-11 4.2E-16 111.0 5.7 144 36-184 371-551 (582)
138 3qf4_A ABC transporter, ATP-bi 99.2 1.5E-11 5.1E-16 110.5 5.8 141 37-183 372-549 (587)
139 2yl4_A ATP-binding cassette SU 99.2 1.4E-11 4.6E-16 111.0 3.9 144 36-182 372-552 (595)
140 3ozx_A RNAse L inhibitor; ATP 99.1 1.3E-10 4.3E-15 103.1 8.0 144 37-185 297-460 (538)
141 1yqt_A RNAse L inhibitor; ATP- 99.1 2.2E-10 7.6E-15 101.7 8.7 56 128-184 417-475 (538)
142 3bk7_A ABC transporter ATP-bin 99.1 2.8E-10 9.6E-15 102.2 9.2 143 36-185 384-546 (607)
143 3ozx_A RNAse L inhibitor; ATP 99.0 1.1E-10 3.6E-15 103.6 4.4 55 129-184 155-210 (538)
144 1yqt_A RNAse L inhibitor; ATP- 99.0 3.9E-10 1.3E-14 100.2 6.1 56 128-184 174-231 (538)
145 3j16_B RLI1P; ribosome recycli 99.0 1.4E-09 4.8E-14 97.6 8.6 141 37-184 381-541 (608)
146 2pt7_A CAG-ALFA; ATPase, prote 98.9 5.7E-09 2E-13 87.1 11.1 128 21-185 160-288 (330)
147 4gp7_A Metallophosphoesterase; 98.9 3E-10 1E-14 86.0 3.0 45 129-173 100-162 (171)
148 3j16_B RLI1P; ribosome recycli 98.9 1E-09 3.6E-14 98.4 7.0 57 128-185 237-295 (608)
149 3bk7_A ABC transporter ATP-bin 98.9 7.8E-10 2.7E-14 99.4 5.7 57 128-185 244-302 (607)
150 3g5u_A MCG1178, multidrug resi 98.9 9.9E-10 3.4E-14 106.6 6.8 143 37-183 1062-1241(1284)
151 3g5u_A MCG1178, multidrug resi 98.9 9.3E-10 3.2E-14 106.8 6.2 133 37-173 419-588 (1284)
152 4akg_A Glutathione S-transfera 98.9 1.4E-08 4.9E-13 103.4 14.6 76 129-204 1335-1433(2695)
153 3b85_A Phosphate starvation-in 98.9 1.2E-09 4.1E-14 85.2 5.5 50 6-67 4-53 (208)
154 3sop_A Neuronal-specific septi 98.9 3.8E-08 1.3E-12 79.8 13.4 36 37-73 5-40 (270)
155 4f4c_A Multidrug resistance pr 98.9 2E-09 7E-14 104.7 6.6 136 37-174 1108-1280(1321)
156 2eyu_A Twitching motility prot 98.8 9.5E-09 3.2E-13 83.0 8.9 60 9-74 5-65 (261)
157 3jvv_A Twitching mobility prot 98.8 1.9E-08 6.5E-13 84.7 10.2 141 9-184 103-243 (356)
158 3f8t_A Predicted ATPase involv 98.8 6.3E-08 2.2E-12 83.4 13.1 170 14-219 214-425 (506)
159 4f4c_A Multidrug resistance pr 98.8 5.7E-09 2E-13 101.6 7.5 133 37-173 447-616 (1321)
160 2i3b_A HCR-ntpase, human cance 98.8 5.6E-08 1.9E-12 74.5 11.2 70 128-200 103-182 (189)
161 4aby_A DNA repair protein RECN 98.8 2.3E-08 7.7E-13 86.0 9.7 51 132-184 317-368 (415)
162 1s96_A Guanylate kinase, GMP k 98.8 3.9E-08 1.3E-12 77.2 9.5 133 37-200 19-164 (219)
163 2ehv_A Hypothetical protein PH 98.8 2.8E-09 9.7E-14 85.1 2.8 57 130-186 135-207 (251)
164 4akg_A Glutathione S-transfera 98.7 6.3E-07 2.2E-11 91.6 18.7 167 20-235 633-836 (2695)
165 3szr_A Interferon-induced GTP- 98.7 4.2E-08 1.4E-12 88.4 9.0 116 34-157 45-180 (608)
166 1tq4_A IIGP1, interferon-induc 98.7 1E-08 3.5E-13 87.8 4.3 54 18-72 35-106 (413)
167 2iw3_A Elongation factor 3A; a 98.7 6.4E-08 2.2E-12 90.6 10.0 53 128-183 564-617 (986)
168 4a74_A DNA repair and recombin 98.7 2.4E-08 8.1E-13 78.6 6.0 22 37-58 28-49 (231)
169 2w0m_A SSO2452; RECA, SSPF, un 98.6 3.8E-08 1.3E-12 77.5 5.7 23 37-59 26-48 (235)
170 1tf7_A KAIC; homohexamer, hexa 98.6 2.2E-08 7.5E-13 88.8 4.7 163 14-184 20-207 (525)
171 2iw3_A Elongation factor 3A; a 98.6 3.1E-08 1E-12 92.7 4.8 54 128-184 917-971 (986)
172 2r2a_A Uncharacterized protein 98.6 4.4E-08 1.5E-12 75.7 4.9 60 130-189 87-153 (199)
173 1z6t_A APAF-1, apoptotic prote 98.5 1.4E-06 4.9E-11 78.1 14.5 199 8-229 119-325 (591)
174 3thx_A DNA mismatch repair pro 98.5 2.2E-07 7.6E-12 87.0 8.5 49 130-180 741-793 (934)
175 3ux8_A Excinuclease ABC, A sub 98.5 5.3E-07 1.8E-11 82.2 10.3 53 130-184 220-276 (670)
176 1e69_A Chromosome segregation 98.5 3.5E-07 1.2E-11 76.1 7.9 51 129-181 240-291 (322)
177 3vkg_A Dynein heavy chain, cyt 98.5 2.1E-06 7.3E-11 88.5 14.5 109 129-237 1373-1525(3245)
178 2a5y_B CED-4; apoptosis; HET: 98.4 2.1E-06 7.2E-11 76.5 12.8 190 16-228 131-333 (549)
179 2ewv_A Twitching motility prot 98.4 5.5E-07 1.9E-11 76.3 8.5 35 36-70 138-172 (372)
180 2orw_A Thymidine kinase; TMTK, 98.4 3.8E-07 1.3E-11 69.6 6.8 49 130-181 76-130 (184)
181 1cr0_A DNA primase/helicase; R 98.4 4.8E-07 1.6E-11 74.2 7.8 23 37-59 38-60 (296)
182 2gza_A Type IV secretion syste 98.4 4.9E-07 1.7E-11 76.3 7.8 46 23-71 166-211 (361)
183 2b8t_A Thymidine kinase; deoxy 98.4 1.4E-06 4.7E-11 68.4 9.7 24 37-60 15-38 (223)
184 2cvh_A DNA repair and recombin 98.4 6.7E-07 2.3E-11 69.7 7.7 20 37-56 23-42 (220)
185 2npi_A Protein CLP1; CLP1-PCF1 98.4 3.4E-07 1.2E-11 79.6 6.2 43 25-70 131-175 (460)
186 3vkg_A Dynein heavy chain, cyt 98.4 1.3E-05 4.3E-10 83.0 18.2 169 19-236 591-797 (3245)
187 3thx_B DNA mismatch repair pro 98.4 8E-07 2.7E-11 83.1 8.6 42 130-171 752-797 (918)
188 1n0w_A DNA repair protein RAD5 98.4 5.1E-07 1.7E-11 71.5 5.9 22 37-58 27-48 (243)
189 1htw_A HI0065; nucleotide-bind 98.3 3E-07 1E-11 68.4 3.8 51 20-74 21-71 (158)
190 1pzn_A RAD51, DNA repair and r 98.3 1.1E-06 3.8E-11 73.8 7.4 22 37-58 134-155 (349)
191 3ux8_A Excinuclease ABC, A sub 98.3 5.6E-07 1.9E-11 82.1 6.0 53 130-184 564-618 (670)
192 1ewq_A DNA mismatch repair pro 98.3 1.2E-06 4E-11 80.7 7.5 23 36-58 578-600 (765)
193 1wb9_A DNA mismatch repair pro 98.3 2.2E-06 7.5E-11 79.3 8.6 23 36-58 609-631 (800)
194 3sfz_A APAF-1, apoptotic pepti 98.3 4.8E-05 1.7E-09 73.6 18.2 197 8-226 119-322 (1249)
195 3qf7_A RAD50; ABC-ATPase, ATPa 98.2 1.6E-05 5.3E-10 67.2 12.2 54 129-184 302-357 (365)
196 1tf7_A KAIC; homohexamer, hexa 98.2 9.1E-07 3.1E-11 78.4 4.7 123 37-170 284-417 (525)
197 3e70_C DPA, signal recognition 98.2 9.5E-06 3.2E-10 67.4 10.5 36 37-73 132-167 (328)
198 2vhj_A Ntpase P4, P4; non- hyd 98.2 1.2E-05 4.2E-10 66.1 10.5 21 37-57 126-146 (331)
199 1rj9_A FTSY, signal recognitio 98.2 5.7E-06 1.9E-10 68.1 8.3 37 36-73 104-140 (304)
200 1nlf_A Regulatory protein REPA 98.2 2.3E-06 7.7E-11 69.6 5.7 23 37-59 33-55 (279)
201 2dpy_A FLII, flagellum-specifi 98.2 1.9E-06 6.6E-11 74.4 5.4 140 19-171 145-318 (438)
202 2bdt_A BH3686; alpha-beta prot 98.1 3.2E-06 1.1E-10 64.4 5.8 32 37-72 5-36 (189)
203 3lda_A DNA repair protein RAD5 98.1 2.5E-06 8.6E-11 72.8 5.4 22 37-58 181-202 (400)
204 3qkt_A DNA double-strand break 98.1 3.3E-05 1.1E-09 64.5 12.1 55 130-186 272-328 (339)
205 3hr8_A Protein RECA; alpha and 98.1 4.8E-06 1.6E-10 69.9 6.1 37 23-59 47-86 (356)
206 2o8b_B DNA mismatch repair pro 98.1 1.5E-05 5.1E-10 75.6 10.0 52 129-181 867-922 (1022)
207 3e1s_A Exodeoxyribonuclease V, 98.0 1.3E-05 4.6E-10 71.6 8.5 57 130-189 279-342 (574)
208 3kl4_A SRP54, signal recogniti 98.0 3.3E-05 1.1E-09 66.4 10.6 29 37-66 100-128 (433)
209 1ls1_A Signal recognition part 98.0 1E-05 3.5E-10 66.3 7.2 34 37-71 101-134 (295)
210 2zr9_A Protein RECA, recombina 98.0 2.2E-05 7.4E-10 65.9 9.0 25 37-61 64-88 (349)
211 2yhs_A FTSY, cell division pro 98.0 4.3E-06 1.5E-10 72.8 4.6 93 37-143 296-388 (503)
212 3pih_A Uvrabc system protein A 98.0 1.5E-05 5E-10 74.6 8.4 43 130-172 826-870 (916)
213 3cmu_A Protein RECA, recombina 98.0 3.5E-05 1.2E-09 77.0 11.2 24 36-59 1429-1452(2050)
214 2vf7_A UVRA2, excinuclease ABC 98.0 1.2E-05 4E-10 74.6 7.4 53 130-184 751-805 (842)
215 4eun_A Thermoresistant glucoki 98.0 6.6E-06 2.3E-10 63.4 4.9 34 33-71 28-61 (200)
216 3c8u_A Fructokinase; YP_612366 98.0 1.1E-05 3.9E-10 62.4 5.9 35 37-71 25-61 (208)
217 1vt4_I APAF-1 related killer D 97.9 0.00032 1.1E-08 66.3 16.3 41 16-56 131-172 (1221)
218 2ius_A DNA translocase FTSK; n 97.9 2.8E-05 9.4E-10 68.2 8.8 71 130-200 296-375 (512)
219 2r8r_A Sensor protein; KDPD, P 97.9 3.1E-05 1.1E-09 60.5 8.2 25 37-61 9-33 (228)
220 3dm5_A SRP54, signal recogniti 97.9 0.0001 3.5E-09 63.5 12.1 24 37-60 103-126 (443)
221 2ga8_A Hypothetical 39.9 kDa p 97.9 9.6E-06 3.3E-10 67.7 5.5 41 19-59 9-49 (359)
222 2qag_C Septin-7; cell cycle, c 97.9 4.7E-05 1.6E-09 65.3 9.7 22 37-58 34-55 (418)
223 2ze6_A Isopentenyl transferase 97.9 0.00014 4.9E-09 58.0 12.0 23 37-59 4-26 (253)
224 2oap_1 GSPE-2, type II secreti 97.9 8.4E-06 2.9E-10 71.8 5.1 60 9-71 233-296 (511)
225 1g5t_A COB(I)alamin adenosyltr 97.9 3.5E-05 1.2E-09 58.9 7.9 50 129-178 119-171 (196)
226 1p9r_A General secretion pathw 97.9 2.2E-05 7.6E-10 67.3 7.3 63 9-73 143-205 (418)
227 1zp6_A Hypothetical protein AT 97.9 4.4E-06 1.5E-10 63.7 2.2 34 36-72 11-44 (191)
228 2dr3_A UPF0273 protein PH0284; 97.9 8.8E-06 3E-10 64.4 4.0 29 37-65 26-54 (247)
229 3exa_A TRNA delta(2)-isopenten 97.9 9.7E-05 3.3E-09 60.6 10.0 89 148-242 79-176 (322)
230 1vma_A Cell division protein F 97.8 9.2E-05 3.1E-09 60.9 9.6 33 37-70 107-139 (306)
231 2r6f_A Excinuclease ABC subuni 97.8 7.3E-05 2.5E-09 69.9 9.9 53 130-184 866-920 (972)
232 2p5t_B PEZT; postsegregational 97.8 5.1E-06 1.8E-10 66.5 2.0 22 37-58 35-56 (253)
233 3llm_A ATP-dependent RNA helic 97.8 0.00036 1.2E-08 54.9 12.6 21 36-56 78-98 (235)
234 2ygr_A Uvrabc system protein A 97.8 0.00011 3.8E-09 68.9 10.8 53 130-184 884-938 (993)
235 1z6g_A Guanylate kinase; struc 97.8 1.6E-05 5.4E-10 62.2 4.4 45 21-72 12-56 (218)
236 2iut_A DNA translocase FTSK; n 97.8 0.00044 1.5E-08 61.2 13.8 69 131-199 344-420 (574)
237 3b9q_A Chloroplast SRP recepto 97.8 1E-05 3.4E-10 66.6 3.1 36 37-73 103-138 (302)
238 1kag_A SKI, shikimate kinase I 97.8 1.3E-05 4.3E-10 60.0 3.5 23 36-58 6-28 (173)
239 2px0_A Flagellar biosynthesis 97.8 9.4E-05 3.2E-09 60.6 8.7 24 36-59 107-130 (296)
240 3crm_A TRNA delta(2)-isopenten 97.8 1.3E-05 4.5E-10 66.2 3.6 23 36-58 7-29 (323)
241 1w36_D RECD, exodeoxyribonucle 97.8 0.00014 4.7E-09 65.5 10.3 38 130-170 262-299 (608)
242 1xx6_A Thymidine kinase; NESG, 97.8 0.00011 3.7E-09 56.2 8.2 23 37-59 11-33 (191)
243 3euj_A Chromosome partition pr 97.7 1.9E-05 6.6E-10 68.7 4.4 39 35-74 30-68 (483)
244 1qhx_A CPT, protein (chloramph 97.7 1.6E-05 5.5E-10 59.7 3.3 23 36-58 5-27 (178)
245 2jeo_A Uridine-cytidine kinase 97.7 1.2E-05 4E-10 64.0 2.6 39 18-58 11-49 (245)
246 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 0.00031 1.1E-08 56.2 11.0 24 35-58 5-28 (260)
247 1u94_A RECA protein, recombina 97.7 0.00014 4.8E-09 61.1 9.2 25 37-61 66-90 (356)
248 3kb2_A SPBC2 prophage-derived 97.7 2.2E-05 7.6E-10 58.5 3.9 23 36-58 3-25 (173)
249 2qnr_A Septin-2, protein NEDD5 97.7 0.0002 6.8E-09 58.8 9.9 21 37-57 21-41 (301)
250 3vaa_A Shikimate kinase, SK; s 97.7 2.8E-05 9.7E-10 59.7 4.5 36 21-58 14-49 (199)
251 3trf_A Shikimate kinase, SK; a 97.7 2.7E-05 9.2E-10 58.9 4.3 24 35-58 6-29 (185)
252 1sq5_A Pantothenate kinase; P- 97.7 4.5E-05 1.5E-09 62.9 5.9 32 36-68 82-115 (308)
253 1kgd_A CASK, peripheral plasma 97.7 2.1E-05 7.2E-10 59.5 3.7 22 37-58 8-29 (180)
254 1gvn_B Zeta; postsegregational 97.7 1.7E-05 5.8E-10 64.7 3.1 22 37-58 36-57 (287)
255 3tr0_A Guanylate kinase, GMP k 97.7 2.2E-05 7.4E-10 60.4 3.4 22 36-57 9-30 (205)
256 2og2_A Putative signal recogni 97.7 1.9E-05 6.4E-10 66.4 3.1 36 37-73 160-195 (359)
257 3uie_A Adenylyl-sulfate kinase 97.7 4E-05 1.4E-09 58.9 4.6 24 36-59 27-50 (200)
258 3a00_A Guanylate kinase, GMP k 97.7 2.3E-05 7.9E-10 59.6 3.1 22 37-58 4-25 (186)
259 3foz_A TRNA delta(2)-isopenten 97.6 9.4E-05 3.2E-09 60.6 6.7 22 37-58 13-34 (316)
260 2v9p_A Replication protein E1; 97.6 4E-05 1.4E-09 62.9 4.6 37 20-58 114-150 (305)
261 1zu4_A FTSY; GTPase, signal re 97.6 0.00025 8.5E-09 58.7 9.4 33 37-70 108-140 (320)
262 1knq_A Gluconate kinase; ALFA/ 97.6 3.1E-05 1.1E-09 58.0 3.6 23 36-58 10-32 (175)
263 1via_A Shikimate kinase; struc 97.6 3.3E-05 1.1E-09 58.0 3.7 23 36-58 6-28 (175)
264 1znw_A Guanylate kinase, GMP k 97.6 2.8E-05 9.7E-10 60.1 3.3 22 37-58 23-44 (207)
265 3t61_A Gluconokinase; PSI-biol 97.6 3.3E-05 1.1E-09 59.3 3.6 23 36-58 20-42 (202)
266 1xp8_A RECA protein, recombina 97.6 0.00063 2.1E-08 57.3 11.7 23 37-59 77-99 (366)
267 1t6n_A Probable ATP-dependent 97.6 0.0025 8.6E-08 49.2 14.4 53 129-181 157-211 (220)
268 1lvg_A Guanylate kinase, GMP k 97.6 3.7E-05 1.3E-09 59.1 3.7 23 36-58 6-28 (198)
269 3iij_A Coilin-interacting nucl 97.6 4.5E-05 1.6E-09 57.4 4.1 24 35-58 12-35 (180)
270 1v5w_A DMC1, meiotic recombina 97.6 0.00018 6E-09 60.2 8.0 22 37-58 125-146 (343)
271 2fz4_A DNA repair protein RAD2 97.6 0.00022 7.6E-09 56.3 8.1 35 21-58 98-132 (237)
272 1ly1_A Polynucleotide kinase; 97.6 3.7E-05 1.3E-09 57.7 3.4 20 37-56 5-24 (181)
273 2z43_A DNA repair and recombin 97.6 7.1E-05 2.4E-09 62.1 5.3 24 37-60 110-133 (324)
274 1zuh_A Shikimate kinase; alpha 97.6 5.9E-05 2E-09 56.1 4.2 26 34-59 7-32 (168)
275 2bbw_A Adenylate kinase 4, AK4 97.6 4.4E-05 1.5E-09 60.7 3.7 25 35-59 28-52 (246)
276 1kht_A Adenylate kinase; phosp 97.6 4.7E-05 1.6E-09 57.7 3.7 24 36-59 5-28 (192)
277 3cm0_A Adenylate kinase; ATP-b 97.6 4.9E-05 1.7E-09 57.5 3.7 23 36-58 6-28 (186)
278 3asz_A Uridine kinase; cytidin 97.6 4.1E-05 1.4E-09 59.2 3.3 23 36-58 8-30 (211)
279 2iyv_A Shikimate kinase, SK; t 97.6 5.7E-05 1.9E-09 57.1 4.0 24 36-59 4-27 (184)
280 1aky_A Adenylate kinase; ATP:A 97.5 6.2E-05 2.1E-09 58.7 4.2 24 35-58 5-28 (220)
281 2obl_A ESCN; ATPase, hydrolase 97.5 4.8E-05 1.6E-09 63.7 3.7 50 18-71 58-107 (347)
282 3cmu_A Protein RECA, recombina 97.5 0.0005 1.7E-08 68.9 11.3 25 36-60 1083-1107(2050)
283 1y63_A LMAJ004144AAA protein; 97.5 6.2E-05 2.1E-09 57.0 4.0 24 34-57 10-33 (184)
284 3tau_A Guanylate kinase, GMP k 97.5 4.8E-05 1.7E-09 58.9 3.4 23 36-58 10-32 (208)
285 3zvl_A Bifunctional polynucleo 97.5 0.00029 1E-08 60.4 8.5 22 37-58 261-282 (416)
286 1nks_A Adenylate kinase; therm 97.5 4.7E-05 1.6E-09 57.7 3.2 24 36-59 3-26 (194)
287 2rhm_A Putative kinase; P-loop 97.5 4.7E-05 1.6E-09 57.8 3.1 23 36-58 7-29 (193)
288 1rz3_A Hypothetical protein rb 97.5 0.00012 4.2E-09 56.2 5.5 22 37-58 25-46 (201)
289 3fb4_A Adenylate kinase; psych 97.5 6.5E-05 2.2E-09 58.3 4.0 23 36-58 2-24 (216)
290 2j41_A Guanylate kinase; GMP, 97.5 5.1E-05 1.7E-09 58.3 3.3 23 36-58 8-30 (207)
291 1qhl_A Protein (cell division 97.5 2E-05 7E-10 61.9 1.0 36 37-73 30-65 (227)
292 2yvu_A Probable adenylyl-sulfa 97.5 6.6E-05 2.2E-09 56.9 3.8 24 36-59 15-38 (186)
293 2cdn_A Adenylate kinase; phosp 97.5 9.5E-05 3.3E-09 56.7 4.7 24 36-59 22-45 (201)
294 2qm8_A GTPase/ATPase; G protei 97.5 3.4E-05 1.2E-09 64.4 2.1 38 35-73 56-93 (337)
295 3dl0_A Adenylate kinase; phosp 97.5 6.5E-05 2.2E-09 58.3 3.6 23 36-58 2-24 (216)
296 1cke_A CK, MSSA, protein (cyti 97.5 6.9E-05 2.3E-09 58.5 3.7 23 36-58 7-29 (227)
297 2gxq_A Heat resistant RNA depe 97.5 0.00088 3E-08 51.2 10.0 53 129-181 143-196 (207)
298 2qor_A Guanylate kinase; phosp 97.5 6.1E-05 2.1E-09 58.0 3.3 23 36-58 14-36 (204)
299 3io5_A Recombination and repai 97.5 0.0012 4E-08 54.3 10.9 23 37-59 31-53 (333)
300 2xau_A PRE-mRNA-splicing facto 97.5 0.0021 7.2E-08 59.4 14.0 40 128-167 206-247 (773)
301 1odf_A YGR205W, hypothetical 3 97.5 0.00017 5.9E-09 58.8 6.1 23 37-59 34-56 (290)
302 1e6c_A Shikimate kinase; phosp 97.5 7.5E-05 2.6E-09 55.7 3.7 23 36-58 4-26 (173)
303 3tlx_A Adenylate kinase 2; str 97.5 0.00015 5.3E-09 57.5 5.6 24 35-58 30-53 (243)
304 2vli_A Antibiotic resistance p 97.5 5.3E-05 1.8E-09 57.0 2.7 25 35-59 6-30 (183)
305 2c95_A Adenylate kinase 1; tra 97.5 8.4E-05 2.9E-09 56.5 3.8 24 35-58 10-33 (196)
306 1tev_A UMP-CMP kinase; ploop, 97.5 8.1E-05 2.8E-09 56.5 3.7 23 36-58 5-27 (196)
307 2plr_A DTMP kinase, probable t 97.4 8.1E-05 2.8E-09 57.3 3.7 25 36-60 6-30 (213)
308 2jaq_A Deoxyguanosine kinase; 97.4 8.3E-05 2.8E-09 56.9 3.7 23 36-58 2-24 (205)
309 2pt5_A Shikimate kinase, SK; a 97.4 0.0001 3.4E-09 54.7 4.0 23 36-58 2-24 (168)
310 1zak_A Adenylate kinase; ATP:A 97.4 8.9E-05 3E-09 57.8 3.7 25 35-59 6-30 (222)
311 3sr0_A Adenylate kinase; phosp 97.4 9.1E-05 3.1E-09 57.3 3.7 22 37-58 3-24 (206)
312 3lw7_A Adenylate kinase relate 97.4 7.3E-05 2.5E-09 55.6 3.0 22 36-58 3-24 (179)
313 3ney_A 55 kDa erythrocyte memb 97.4 0.00011 3.8E-09 56.3 4.1 24 35-58 20-43 (197)
314 2pez_A Bifunctional 3'-phospho 97.4 0.0001 3.5E-09 55.4 3.9 23 36-58 7-29 (179)
315 1nij_A Hypothetical protein YJ 97.4 5.7E-05 1.9E-09 62.5 2.6 40 34-74 4-51 (318)
316 2r6a_A DNAB helicase, replicat 97.4 0.0015 5E-08 56.7 11.5 23 37-59 206-228 (454)
317 3tqc_A Pantothenate kinase; bi 97.4 0.00019 6.3E-09 59.4 5.5 22 37-58 95-116 (321)
318 1ak2_A Adenylate kinase isoenz 97.4 0.00013 4.3E-09 57.5 4.4 24 35-58 17-40 (233)
319 3be4_A Adenylate kinase; malar 97.4 8.3E-05 2.8E-09 57.9 3.3 24 35-58 6-29 (217)
320 3nwj_A ATSK2; P loop, shikimat 97.4 0.00013 4.5E-09 58.1 4.4 40 17-58 30-72 (250)
321 2f1r_A Molybdopterin-guanine d 97.4 2.4E-05 8.4E-10 58.7 -0.0 36 36-72 4-42 (171)
322 1u0l_A Probable GTPase ENGC; p 97.4 6.6E-05 2.2E-09 61.6 2.5 37 36-73 171-210 (301)
323 2qag_B Septin-6, protein NEDD5 97.4 6E-05 2.1E-09 64.6 2.4 36 22-57 30-65 (427)
324 3aez_A Pantothenate kinase; tr 97.4 0.00011 3.6E-09 60.7 3.7 22 37-58 93-114 (312)
325 2bwj_A Adenylate kinase 5; pho 97.4 9.5E-05 3.3E-09 56.4 3.2 23 36-58 14-36 (199)
326 1jjv_A Dephospho-COA kinase; P 97.4 8.1E-05 2.8E-09 57.3 2.8 20 37-56 5-24 (206)
327 3umf_A Adenylate kinase; rossm 97.4 0.00013 4.6E-09 56.8 4.0 22 37-58 32-53 (217)
328 1nrj_B SR-beta, signal recogni 97.3 0.0031 1.1E-07 48.5 11.7 27 32-58 10-36 (218)
329 2if2_A Dephospho-COA kinase; a 97.3 9.4E-05 3.2E-09 56.8 2.9 22 36-58 3-24 (204)
330 3pey_A ATP-dependent RNA helic 97.3 0.005 1.7E-07 51.6 13.8 45 128-172 143-189 (395)
331 2pbr_A DTMP kinase, thymidylat 97.3 0.00013 4.5E-09 55.3 3.6 22 37-58 3-24 (195)
332 1qf9_A UMP/CMP kinase, protein 97.3 0.00011 3.8E-09 55.6 3.1 23 36-58 8-30 (194)
333 1ukz_A Uridylate kinase; trans 97.3 0.00013 4.5E-09 56.0 3.6 23 36-58 17-39 (203)
334 2xb4_A Adenylate kinase; ATP-b 97.3 0.00013 4.6E-09 57.0 3.7 23 36-58 2-24 (223)
335 2z0h_A DTMP kinase, thymidylat 97.3 0.00014 4.8E-09 55.3 3.7 22 37-58 3-24 (197)
336 3lnc_A Guanylate kinase, GMP k 97.3 6.7E-05 2.3E-09 59.0 1.9 22 36-57 29-51 (231)
337 3fmo_B ATP-dependent RNA helic 97.3 0.0029 9.9E-08 51.7 11.8 53 129-181 234-288 (300)
338 1zd8_A GTP:AMP phosphotransfer 97.3 9.8E-05 3.3E-09 57.9 2.8 24 35-58 8-31 (227)
339 2yv5_A YJEQ protein; hydrolase 97.3 0.00013 4.5E-09 59.8 3.7 35 37-73 168-205 (302)
340 3cmw_A Protein RECA, recombina 97.3 0.00061 2.1E-08 67.4 8.8 22 37-58 1085-1106(1706)
341 1vec_A ATP-dependent RNA helic 97.3 0.0054 1.8E-07 46.7 12.6 52 129-180 145-197 (206)
342 1j8m_F SRP54, signal recogniti 97.3 0.0026 8.9E-08 51.9 11.2 31 37-68 101-131 (297)
343 1e4v_A Adenylate kinase; trans 97.3 0.00013 4.3E-09 56.7 3.1 23 36-58 2-24 (214)
344 2wwf_A Thymidilate kinase, put 97.3 0.00013 4.3E-09 56.3 3.1 25 36-60 12-36 (212)
345 1rif_A DAR protein, DNA helica 97.3 0.0029 1E-07 51.0 11.3 40 129-171 224-263 (282)
346 4e22_A Cytidylate kinase; P-lo 97.3 0.00015 5E-09 57.9 3.5 23 36-58 29-51 (252)
347 1nn5_A Similar to deoxythymidy 97.3 0.00017 6E-09 55.6 3.8 25 35-59 10-34 (215)
348 1qde_A EIF4A, translation init 97.3 0.0039 1.3E-07 48.2 11.6 53 129-181 154-207 (224)
349 3cr8_A Sulfate adenylyltranfer 97.3 0.00021 7.3E-09 63.4 4.6 53 19-71 352-407 (552)
350 2wsm_A Hydrogenase expression/ 97.3 0.00018 6.3E-09 55.8 3.8 43 16-58 12-54 (221)
351 2j9r_A Thymidine kinase; TK1, 97.3 0.00072 2.5E-08 52.3 6.9 23 37-59 31-53 (214)
352 3kta_A Chromosome segregation 97.2 0.00019 6.5E-09 54.0 3.6 24 36-59 28-51 (182)
353 2ffh_A Protein (FFH); SRP54, s 97.2 0.0013 4.6E-08 56.3 9.2 33 37-70 101-133 (425)
354 1svm_A Large T antigen; AAA+ f 97.2 0.00024 8.4E-09 60.0 4.5 23 36-58 171-193 (377)
355 1m7g_A Adenylylsulfate kinase; 97.2 0.0002 6.8E-09 55.4 3.7 24 36-59 27-50 (211)
356 1ex7_A Guanylate kinase; subst 97.2 0.0002 7E-09 54.4 3.6 21 37-57 4-24 (186)
357 2v54_A DTMP kinase, thymidylat 97.2 0.00015 5E-09 55.6 2.8 24 35-58 5-28 (204)
358 1lw7_A Transcriptional regulat 97.2 0.00013 4.5E-09 61.5 2.7 26 37-63 173-198 (365)
359 3lxx_A GTPase IMAP family memb 97.2 0.0058 2E-07 47.9 12.2 23 35-57 30-52 (239)
360 3r20_A Cytidylate kinase; stru 97.2 0.00022 7.7E-09 56.1 3.7 23 36-58 11-33 (233)
361 2orv_A Thymidine kinase; TP4A 97.2 0.0013 4.3E-08 51.5 7.8 36 130-169 90-125 (234)
362 3iuy_A Probable ATP-dependent 97.2 0.0015 5.3E-08 50.8 8.4 52 129-180 166-218 (228)
363 2rcn_A Probable GTPase ENGC; Y 97.2 6E-05 2.1E-09 63.2 0.2 33 36-69 217-250 (358)
364 1w4r_A Thymidine kinase; type 97.2 0.00055 1.9E-08 52.2 5.4 22 37-58 23-45 (195)
365 3h1t_A Type I site-specific re 97.2 0.00094 3.2E-08 59.8 7.8 42 18-60 183-224 (590)
366 3ake_A Cytidylate kinase; CMP 97.1 0.00032 1.1E-08 53.8 4.0 24 36-59 4-27 (208)
367 2xxa_A Signal recognition part 97.1 0.0038 1.3E-07 53.7 10.8 25 37-61 103-127 (433)
368 4gzl_A RAS-related C3 botulinu 97.1 0.0023 8E-08 48.9 8.7 41 17-57 13-53 (204)
369 2hf9_A Probable hydrogenase ni 97.1 0.00054 1.8E-08 53.3 5.1 43 18-60 22-64 (226)
370 3ly5_A ATP-dependent RNA helic 97.1 0.0032 1.1E-07 50.3 9.6 50 129-178 200-250 (262)
371 2qt1_A Nicotinamide riboside k 97.1 0.0002 6.8E-09 55.2 2.3 21 37-57 24-44 (207)
372 1uf9_A TT1252 protein; P-loop, 97.1 0.00029 9.9E-09 53.8 3.2 21 36-56 10-30 (203)
373 4eaq_A DTMP kinase, thymidylat 97.1 0.00036 1.2E-08 54.9 3.7 24 36-59 28-51 (229)
374 2gj8_A MNME, tRNA modification 97.1 0.0042 1.4E-07 46.1 9.4 21 36-56 6-26 (172)
375 1gtv_A TMK, thymidylate kinase 97.1 0.00012 4.3E-09 56.4 0.9 23 37-59 3-25 (214)
376 2e87_A Hypothetical protein PH 97.1 0.0028 9.6E-08 53.1 9.3 44 129-172 247-292 (357)
377 1xjc_A MOBB protein homolog; s 97.0 0.0005 1.7E-08 51.3 4.1 26 34-59 4-29 (169)
378 3fht_A ATP-dependent RNA helic 97.0 0.012 4E-07 49.7 13.2 44 129-172 167-212 (412)
379 1uj2_A Uridine-cytidine kinase 97.0 0.00036 1.2E-08 55.5 3.6 24 36-59 24-47 (252)
380 2grj_A Dephospho-COA kinase; T 97.0 0.0004 1.4E-08 53.1 3.5 22 37-58 15-36 (192)
381 1ltq_A Polynucleotide kinase; 97.0 0.00036 1.2E-08 56.9 3.4 21 37-57 5-25 (301)
382 1vht_A Dephospho-COA kinase; s 97.0 0.00042 1.4E-08 53.8 3.4 21 36-56 6-26 (218)
383 1g8f_A Sulfate adenylyltransfe 97.0 0.0009 3.1E-08 58.7 5.7 45 16-60 375-421 (511)
384 3vkw_A Replicase large subunit 97.0 0.0031 1.1E-07 54.2 8.9 35 131-169 235-269 (446)
385 2f9l_A RAB11B, member RAS onco 97.0 0.00043 1.5E-08 52.8 3.3 22 36-57 7-28 (199)
386 3bor_A Human initiation factor 97.0 0.0055 1.9E-07 48.0 9.8 53 129-181 172-225 (237)
387 1np6_A Molybdopterin-guanine d 97.0 0.00064 2.2E-08 51.0 4.0 26 34-59 6-31 (174)
388 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00057 2E-08 49.9 3.7 24 37-60 26-49 (149)
389 1oix_A RAS-related protein RAB 97.0 0.00039 1.3E-08 52.7 2.9 22 37-58 32-53 (191)
390 3ice_A Transcription terminati 97.0 0.0011 3.9E-08 55.8 5.9 37 23-59 163-199 (422)
391 2vp4_A Deoxynucleoside kinase; 96.9 0.00027 9.1E-09 55.5 1.9 21 37-57 23-43 (230)
392 2j37_W Signal recognition part 96.9 0.011 3.6E-07 51.9 12.0 24 36-59 103-126 (504)
393 3lxw_A GTPase IMAP family memb 96.9 0.045 1.5E-06 43.1 14.8 21 36-56 23-43 (247)
394 1mky_A Probable GTP-binding pr 96.9 0.056 1.9E-06 46.5 16.4 22 36-57 182-203 (439)
395 2va8_A SSO2462, SKI2-type heli 96.9 0.0046 1.6E-07 56.7 10.0 21 35-55 47-67 (715)
396 3fmp_B ATP-dependent RNA helic 96.9 0.0053 1.8E-07 53.4 10.0 46 129-174 234-281 (479)
397 1q3t_A Cytidylate kinase; nucl 96.9 0.00079 2.7E-08 53.0 4.3 23 36-58 18-40 (236)
398 3d3q_A TRNA delta(2)-isopenten 96.9 0.00057 2E-08 56.8 3.4 23 36-58 9-31 (340)
399 1q0u_A Bstdead; DEAD protein, 96.9 0.0059 2E-07 47.1 9.0 53 129-181 149-202 (219)
400 2qmh_A HPR kinase/phosphorylas 96.9 0.00044 1.5E-08 52.9 2.4 22 36-57 36-57 (205)
401 1m7b_A RND3/RHOE small GTP-bin 96.8 0.006 2E-07 45.6 8.7 22 36-57 9-30 (184)
402 2www_A Methylmalonic aciduria 96.8 0.0012 4.1E-08 55.3 5.1 36 34-70 74-109 (349)
403 3fho_A ATP-dependent RNA helic 96.8 0.0096 3.3E-07 52.3 11.0 44 129-172 258-303 (508)
404 2v6i_A RNA helicase; membrane, 96.8 0.0044 1.5E-07 53.3 8.5 21 35-55 3-24 (431)
405 3fe2_A Probable ATP-dependent 96.8 0.00087 3E-08 52.9 3.8 53 129-181 175-228 (242)
406 1t9h_A YLOQ, probable GTPase E 96.8 0.00012 4.1E-09 60.1 -1.3 32 36-68 175-206 (307)
407 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.0083 2.8E-07 44.5 9.1 22 36-57 7-28 (186)
408 3a8t_A Adenylate isopentenyltr 96.8 0.0005 1.7E-08 57.0 2.2 23 36-58 42-64 (339)
409 3e2i_A Thymidine kinase; Zn-bi 96.8 0.00095 3.3E-08 51.6 3.6 36 130-168 101-136 (219)
410 3con_A GTPase NRAS; structural 96.8 0.0099 3.4E-07 44.5 9.4 21 37-57 24-44 (190)
411 1xti_A Probable ATP-dependent 96.7 0.03 1E-06 46.8 13.2 44 129-172 151-196 (391)
412 2ged_A SR-beta, signal recogni 96.7 0.0022 7.6E-08 48.2 5.6 23 35-57 49-71 (193)
413 2eyq_A TRCF, transcription-rep 96.7 0.03 1E-06 54.1 14.4 39 18-56 608-646 (1151)
414 1wp9_A ATP-dependent RNA helic 96.7 0.015 5E-07 49.9 11.3 44 128-171 123-167 (494)
415 3ber_A Probable ATP-dependent 96.7 0.0041 1.4E-07 49.3 7.2 53 129-181 185-238 (249)
416 2f6r_A COA synthase, bifunctio 96.7 0.00079 2.7E-08 54.6 3.0 22 36-58 77-98 (281)
417 2oxc_A Probable ATP-dependent 96.7 0.0093 3.2E-07 46.4 9.1 52 129-180 165-218 (230)
418 1s2m_A Putative ATP-dependent 96.7 0.052 1.8E-06 45.6 14.4 43 129-171 162-205 (400)
419 4b3f_X DNA-binding protein smu 96.7 0.0024 8.2E-08 57.9 6.4 42 18-61 191-232 (646)
420 3bwd_D RAC-like GTP-binding pr 96.7 0.012 4.2E-07 43.4 9.4 23 34-56 8-30 (182)
421 3tw8_B RAS-related protein RAB 96.7 0.0064 2.2E-07 44.9 7.7 21 36-56 11-31 (181)
422 3qks_A DNA double-strand break 96.7 0.0012 4.2E-08 50.8 3.7 25 37-61 26-50 (203)
423 2oca_A DAR protein, ATP-depend 96.7 0.018 6E-07 50.4 11.6 35 22-59 119-153 (510)
424 3reg_A RHO-like small GTPase; 96.7 0.011 3.6E-07 44.5 9.0 22 36-57 25-46 (194)
425 3tqf_A HPR(Ser) kinase; transf 96.7 0.00091 3.1E-08 49.9 2.8 21 36-56 18-38 (181)
426 1gwn_A RHO-related GTP-binding 96.7 0.01 3.6E-07 45.3 9.0 22 36-57 30-51 (205)
427 3q3j_B RHO-related GTP-binding 96.7 0.014 5E-07 44.8 9.8 22 36-57 29-50 (214)
428 3cmw_A Protein RECA, recombina 96.7 0.0066 2.3E-07 60.3 9.4 22 37-58 1434-1455(1706)
429 2zj8_A DNA helicase, putative 96.6 0.0039 1.3E-07 57.2 7.5 24 35-58 40-64 (720)
430 1hv8_A Putative ATP-dependent 96.6 0.0059 2E-07 50.6 8.0 44 129-172 146-190 (367)
431 2h92_A Cytidylate kinase; ross 96.6 0.0012 4.1E-08 51.1 3.5 23 36-58 5-27 (219)
432 4edh_A DTMP kinase, thymidylat 96.6 0.0013 4.5E-08 51.0 3.7 25 36-60 8-32 (213)
433 3gmt_A Adenylate kinase; ssgci 96.6 0.0015 5.3E-08 51.1 4.0 23 37-59 11-33 (230)
434 2wji_A Ferrous iron transport 96.6 0.00091 3.1E-08 49.3 2.6 21 36-56 5-25 (165)
435 3pqc_A Probable GTP-binding pr 96.6 0.022 7.5E-07 42.5 10.4 23 34-56 23-45 (195)
436 2g6b_A RAS-related protein RAB 96.6 0.012 4.3E-07 43.3 8.8 22 36-57 12-33 (180)
437 3dz8_A RAS-related protein RAB 96.6 0.0067 2.3E-07 45.6 7.3 23 36-58 25-47 (191)
438 2dyk_A GTP-binding protein; GT 96.6 0.0014 4.9E-08 47.6 3.4 23 35-57 2-24 (161)
439 1a7j_A Phosphoribulokinase; tr 96.6 0.00076 2.6E-08 55.0 2.0 24 36-59 7-30 (290)
440 1m8p_A Sulfate adenylyltransfe 96.6 0.0022 7.4E-08 57.3 5.0 39 21-59 381-421 (573)
441 3ld9_A DTMP kinase, thymidylat 96.6 0.0018 6.1E-08 50.6 3.9 27 33-59 20-46 (223)
442 4dhe_A Probable GTP-binding pr 96.6 0.024 8.4E-07 43.5 10.6 25 32-56 27-51 (223)
443 3lv8_A DTMP kinase, thymidylat 96.6 0.0013 4.6E-08 51.8 3.3 24 36-59 29-52 (236)
444 3dkp_A Probable ATP-dependent 96.6 0.021 7.2E-07 44.7 10.3 51 129-179 174-229 (245)
445 2pl3_A Probable ATP-dependent 96.5 0.0025 8.6E-08 49.8 4.8 52 129-180 170-222 (236)
446 2j0v_A RAC-like GTP-binding pr 96.5 0.018 6E-07 44.0 9.5 22 36-57 11-32 (212)
447 3p32_A Probable GTPase RV1496/ 96.5 0.0043 1.5E-07 51.9 6.4 28 33-60 78-105 (355)
448 1wf3_A GTP-binding protein; GT 96.5 0.13 4.5E-06 41.8 15.1 73 130-203 88-169 (301)
449 3v9p_A DTMP kinase, thymidylat 96.5 0.0012 4E-08 51.8 2.6 24 36-59 27-50 (227)
450 3llu_A RAS-related GTP-binding 96.5 0.052 1.8E-06 40.8 11.9 22 35-56 21-42 (196)
451 2zej_A Dardarin, leucine-rich 96.5 0.0012 4.3E-08 49.5 2.7 20 37-56 5-24 (184)
452 2atx_A Small GTP binding prote 96.5 0.019 6.6E-07 43.0 9.4 22 36-57 20-41 (194)
453 1f2t_B RAD50 ABC-ATPase; DNA d 96.5 0.0048 1.6E-07 44.9 5.7 53 130-184 81-135 (148)
454 2ocp_A DGK, deoxyguanosine kin 96.5 0.0014 4.8E-08 51.7 2.9 23 36-58 4-26 (241)
455 2wjg_A FEOB, ferrous iron tran 96.5 0.0014 4.9E-08 49.0 2.8 21 36-56 9-29 (188)
456 2whx_A Serine protease/ntpase/ 96.5 0.0085 2.9E-07 54.0 8.3 43 129-171 276-319 (618)
457 2qtf_A Protein HFLX, GTP-bindi 96.4 0.022 7.4E-07 47.9 10.2 23 35-57 180-202 (364)
458 3eiq_A Eukaryotic initiation f 96.4 0.0092 3.2E-07 50.4 8.1 43 129-171 182-225 (414)
459 4ag6_A VIRB4 ATPase, type IV s 96.4 0.0032 1.1E-07 53.4 5.0 89 129-223 261-362 (392)
460 3eph_A TRNA isopentenyltransfe 96.4 0.0016 5.6E-08 55.2 3.1 23 37-59 5-27 (409)
461 2gks_A Bifunctional SAT/APS ki 96.4 0.0035 1.2E-07 55.6 5.4 41 19-59 355-397 (546)
462 1z2a_A RAS-related protein RAB 96.4 0.0022 7.4E-08 46.9 3.3 22 36-57 7-28 (168)
463 2gco_A H9, RHO-related GTP-bin 96.4 0.017 5.9E-07 43.7 8.5 22 36-57 27-48 (201)
464 2axn_A 6-phosphofructo-2-kinas 96.4 0.0022 7.4E-08 56.6 3.7 23 37-59 38-60 (520)
465 1pui_A ENGB, probable GTP-bind 96.4 0.00053 1.8E-08 52.6 -0.2 22 35-56 27-48 (210)
466 3tmk_A Thymidylate kinase; pho 96.3 0.0027 9.3E-08 49.3 3.8 25 35-59 6-30 (216)
467 1p5z_B DCK, deoxycytidine kina 96.3 0.00075 2.6E-08 54.0 0.6 24 35-58 25-48 (263)
468 1kao_A RAP2A; GTP-binding prot 96.3 0.0025 8.5E-08 46.4 3.4 22 36-57 5-26 (167)
469 2gk6_A Regulator of nonsense t 96.3 0.0063 2.2E-07 54.9 6.7 40 18-60 182-221 (624)
470 4tmk_A Protein (thymidylate ki 96.3 0.0022 7.6E-08 49.7 3.2 25 36-60 5-29 (213)
471 2o5v_A DNA replication and rep 96.3 0.0027 9.2E-08 53.3 3.9 23 36-58 28-50 (359)
472 2p6r_A Afuhel308 helicase; pro 96.3 0.014 4.7E-07 53.4 8.9 43 129-171 137-183 (702)
473 2z0m_A 337AA long hypothetical 96.3 0.031 1.1E-06 45.6 10.3 21 36-56 33-53 (337)
474 2ce2_X GTPase HRAS; signaling 96.3 0.0022 7.4E-08 46.6 2.8 22 36-57 5-26 (166)
475 2lkc_A Translation initiation 96.3 0.0029 1E-07 46.8 3.6 23 34-56 8-30 (178)
476 2v3c_C SRP54, signal recogniti 96.3 0.0022 7.4E-08 55.2 3.1 24 36-59 101-124 (432)
477 3bh0_A DNAB-like replicative h 96.3 0.0046 1.6E-07 50.9 5.0 25 37-61 71-95 (315)
478 1z0j_A RAB-22, RAS-related pro 96.3 0.0028 9.7E-08 46.3 3.4 22 36-57 8-29 (170)
479 1ek0_A Protein (GTP-binding pr 96.3 0.0028 9.5E-08 46.3 3.3 21 37-57 6-26 (170)
480 1u8z_A RAS-related protein RAL 96.3 0.0028 9.6E-08 46.1 3.3 22 36-57 6-27 (168)
481 1svi_A GTP-binding protein YSX 96.2 0.0021 7E-08 48.5 2.6 24 33-56 22-45 (195)
482 2zts_A Putative uncharacterize 96.2 0.0018 6.2E-08 50.9 2.3 21 37-57 33-53 (251)
483 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.003 1E-07 46.6 3.4 21 36-56 9-29 (177)
484 1z08_A RAS-related protein RAB 96.2 0.0031 1E-07 46.2 3.4 22 36-57 8-29 (170)
485 2nzj_A GTP-binding protein REM 96.2 0.0029 9.8E-08 46.6 3.2 21 36-56 6-26 (175)
486 3clv_A RAB5 protein, putative; 96.2 0.0032 1.1E-07 47.5 3.5 23 35-57 8-30 (208)
487 3iev_A GTP-binding protein ERA 96.2 0.033 1.1E-06 45.5 9.9 20 37-56 13-32 (308)
488 2jlq_A Serine protease subunit 96.2 0.013 4.5E-07 50.6 7.8 41 129-170 109-151 (451)
489 1ky3_A GTP-binding protein YPT 96.2 0.0032 1.1E-07 46.6 3.4 23 35-57 9-31 (182)
490 2j0s_A ATP-dependent RNA helic 96.2 0.071 2.4E-06 44.9 12.2 43 129-171 178-221 (410)
491 1x6v_B Bifunctional 3'-phospho 96.2 0.003 1E-07 56.8 3.7 24 36-59 54-77 (630)
492 1c1y_A RAS-related protein RAP 96.2 0.0033 1.1E-07 45.8 3.3 21 36-56 5-25 (167)
493 3fdi_A Uncharacterized protein 96.2 0.0032 1.1E-07 48.3 3.3 24 36-59 8-31 (201)
494 3l0o_A Transcription terminati 96.2 0.012 4E-07 49.7 6.9 39 21-59 162-200 (427)
495 1w1w_A Structural maintenance 96.2 0.0034 1.1E-07 54.0 3.8 26 37-63 29-54 (430)
496 2erx_A GTP-binding protein DI- 96.2 0.0028 9.5E-08 46.4 2.9 21 36-56 5-25 (172)
497 1r2q_A RAS-related protein RAB 96.2 0.0034 1.2E-07 45.8 3.3 20 37-56 9-28 (170)
498 1g16_A RAS-related protein SEC 96.1 0.0028 9.6E-08 46.3 2.8 21 36-56 5-25 (170)
499 3q85_A GTP-binding protein REM 96.1 0.0033 1.1E-07 46.1 3.2 21 36-56 4-24 (169)
500 1r8s_A ADP-ribosylation factor 96.1 0.0036 1.2E-07 45.5 3.3 22 37-58 3-24 (164)
No 1
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=7.2e-39 Score=271.87 Aligned_cols=241 Identities=40% Similarity=0.720 Sum_probs=182.9
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHh-hcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~-~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
|+|+|||||++|++++|++.+++.+..++ ..++.++++|+||+|+||||+++++++.+.++..|.+.+++..+...+..
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 59999999999999999999999999999 88888889999999999999999999988899988888877665422222
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCc----CCC-CCCeeEEEEeCCCCCCHHHHHHHHHHH
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKG-KRGFKVLVLNEVDKLSREAQHSLRRTM 154 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~viiiDE~d~l~~~~~~~ll~~l 154 (248)
+..+.......++.+.....+......+++.++.+....+.. +++ ..+++++||||++.|++.+++.|++++
T Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 82 ---KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred ---cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 123333333444555554433332223555566554433221 122 457899999999999999999999999
Q ss_pred HHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHccccHHHHHHHHH
Q 025758 155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 155 e~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
++++.++.+|++||++..+.++++|||..+.|++|+.+++.+++..++.++++.++ +++++.+++.++||+|.+++.|+
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99988899999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHhhhcc-cccC
Q 025758 234 TCRVQQL-RFTM 244 (248)
Q Consensus 234 ~~~~~~~-~~~~ 244 (248)
.+..... .++.
T Consensus 239 ~~~~~~~~~i~~ 250 (354)
T 1sxj_E 239 SMALNNELALKS 250 (354)
T ss_dssp HHHHTTTTEECS
T ss_pred HHHHhCCCCcCc
Confidence 9887654 3544
No 2
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.4e-33 Score=238.23 Aligned_cols=207 Identities=36% Similarity=0.650 Sum_probs=173.1
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
++|++||||++|++++|++.+++.|..++..|+.+|++|+||+|+||||+|+++|+.+.+.....
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~--------------- 77 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN--------------- 77 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH---------------
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc---------------
Confidence 58999999999999999999999999999999999999999999999999999999886543210
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
...++...+. .....+++.+..+...... ...+++|++|||+|.|...++++|++++|+++..
T Consensus 78 ------------~~~~~~~~~~--~~~~~ir~~i~~~~~~~~~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~ 140 (340)
T 1sxj_C 78 ------------MVLELNASDD--RGIDVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140 (340)
T ss_dssp ------------HEEEECTTSC--CSHHHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred ------------eEEEEcCccc--ccHHHHHHHHHHHHhhccc---CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 0122332221 1122344455555532211 1235899999999999999999999999999999
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+.+|+++|.+..+.++++|||..+.|.+++.+++.+++..++.++++.++++.+..++..++|++|.+++.|+.+....
T Consensus 141 ~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~ 219 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATL 219 (340)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTT
T ss_pred eEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876543
No 3
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=1.7e-33 Score=236.17 Aligned_cols=207 Identities=27% Similarity=0.447 Sum_probs=168.6
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
.+|++||+|++|++++|++.+++.+..++..++.++ ++++||+|+|||++|+++++.+.. .
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~---~--------------- 75 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA---D--------------- 75 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE---E---------------
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC---C---------------
Confidence 479999999999999999999999999999998888 788888999999999999987621 0
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-HHHHHHHHHHHHHhc
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS 158 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-~~~~~~ll~~le~~~ 158 (248)
.+.+.++..+ ...+.+.+..+....+. .+.+++++|||+|.+. ...++.|++++++++
T Consensus 76 --------------~~~i~~~~~~---~~~i~~~~~~~~~~~~~----~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~ 134 (324)
T 3u61_B 76 --------------MMFVNGSDCK---IDFVRGPLTNFASAASF----DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS 134 (324)
T ss_dssp --------------EEEEETTTCC---HHHHHTHHHHHHHBCCC----SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG
T ss_pred --------------EEEEcccccC---HHHHHHHHHHHHhhccc----CCCCeEEEEECCcccCcHHHHHHHHHHHHhCC
Confidence 1233333322 23345555555554332 3478999999999999 999999999999998
Q ss_pred CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHccccHHHHHH
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ-------IVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAIL 230 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~-------~~~il~~~~~~~~~~~~~-~~~~~l~~~~~g~~r~~~~ 230 (248)
.++.+|+++|.+..+.++++|||..+.|++|+.++ +..++...+.++++.+++ ++++.+++.++||+|.+++
T Consensus 135 ~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 135 SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp GGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred CCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 88999999999999999999999999999999887 445566667788999998 9999999999999999999
Q ss_pred HHHHHhhhcccccCCCC
Q 025758 231 SFETCRVQQLRFTMPSV 247 (248)
Q Consensus 231 ~l~~~~~~~~~~~~~~v 247 (248)
.|+.++ ....++.+.|
T Consensus 215 ~L~~~~-~~~~i~~~~v 230 (324)
T 3u61_B 215 ELDSYS-SKGVLDAGIL 230 (324)
T ss_dssp HHHHHG-GGTCBCC---
T ss_pred HHHHHh-ccCCCCHHHH
Confidence 999998 4445655543
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=6e-33 Score=231.79 Aligned_cols=210 Identities=40% Similarity=0.686 Sum_probs=171.1
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
++|++||+|++|++++|++.+++.+..++..++.++++|+||+|+|||++|+.++..+.++..+. .+
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~------~~------- 71 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD------NF------- 71 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHH------HC-------
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccC------Ce-------
Confidence 58999999999999999999999999999998888899999999999999999999886543211 00
Q ss_pred ccccceeeecccceeeeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 81 NIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
+.+..... +.. ...+.+..+....+. ..+.+++++|||+|.++...++.|++++++++.
T Consensus 72 --------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~ 131 (319)
T 2chq_A 72 --------------IEMNASDERGID---VVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSK 131 (319)
T ss_dssp --------------EEEETTSTTCTT---TSSHHHHHHHHSCCS---SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSS
T ss_pred --------------EEEeCccccChH---HHHHHHHHHHhcCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCC
Confidence 11111111 111 122233434333322 134688999999999999999999999999888
Q ss_pred CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
++.+|++++.+..+.+++.+||..+.|++++.+++..++..++.++++.++++.++.++..++||+|.+++.++.+....
T Consensus 132 ~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~ 211 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSS
T ss_pred CCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cccc
Q 025758 240 LRFT 243 (248)
Q Consensus 240 ~~~~ 243 (248)
..++
T Consensus 212 ~~i~ 215 (319)
T 2chq_A 212 EVVD 215 (319)
T ss_dssp SCBC
T ss_pred CCCC
Confidence 3333
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.4e-32 Score=230.37 Aligned_cols=208 Identities=41% Similarity=0.693 Sum_probs=170.5
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
++|++||+|++|++++|++.+++.+..++..++.++++|+||+|+|||++|+.++..+.++....
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~--------------- 77 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRH--------------- 77 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC---------------
Confidence 58999999999999999999999999999999888999999999999999999999875432110
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..+.+.+.+. .......+.+..+....+. ..+.+.+++|||++.++...++.|++++++++.+
T Consensus 78 ------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~ 140 (327)
T 1iqp_A 78 ------------NFLELNASDE--RGINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSN 140 (327)
T ss_dssp ------------HEEEEETTCH--HHHHTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred ------------ceEEeecccc--CchHHHHHHHHHHHhhCCc---CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence 0122222111 0111123334444433332 1246889999999999999999999999998888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 240 (248)
+.||++++.+..+.+++.+||..+.|++++.+++..++..++.++++.++++.++.++..++||+|.+++.++.+.....
T Consensus 141 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 220 (327)
T 1iqp_A 141 VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 220 (327)
T ss_dssp EEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred CeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875443
No 6
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=6.5e-32 Score=228.73 Aligned_cols=210 Identities=33% Similarity=0.616 Sum_probs=168.3
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
++|++||+|++|++++|++++++.+..++..++.++++|+||||+||||+|+++++.+.++.....
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------------- 90 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-------------- 90 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT--------------
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc--------------
Confidence 489999999999999999999999999999988888999999999999999999998754311110
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCc-------CCCCCCeeEEEEeCCCCCCHHHHHHHHHH
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-------TKGKRGFKVLVLNEVDKLSREAQHSLRRT 153 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~viiiDE~d~l~~~~~~~ll~~ 153 (248)
..+.+.+.+.. ....+.+.+..+....... ......+.+++|||++.+++..++.|+++
T Consensus 91 ------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~ 156 (353)
T 1sxj_D 91 ------------RILELNASDER--GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRT 156 (353)
T ss_dssp ------------SEEEECSSSCC--CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHH
T ss_pred ------------ceEEEcccccc--chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHH
Confidence 01223322211 1111222233333221110 01124668999999999999999999999
Q ss_pred HHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 154 le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
+++++....||+++|++..+.+++++||..+.|++++.+++..++..++.++++.+++++++++++.+.||+|.+++.++
T Consensus 157 le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 157 METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 025758 234 TCRVQ 238 (248)
Q Consensus 234 ~~~~~ 238 (248)
.+...
T Consensus 237 ~~~~~ 241 (353)
T 1sxj_D 237 SASKG 241 (353)
T ss_dssp HTHHH
T ss_pred HHHHh
Confidence 88754
No 7
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.98 E-value=1.8e-31 Score=223.25 Aligned_cols=208 Identities=29% Similarity=0.511 Sum_probs=171.1
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
++|++||+|.+|++++|++.+++.+..++..++.++++|+||+|+|||++|+.++..+.++....
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~--------------- 73 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYAD--------------- 73 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC---------------
Confidence 47999999999999999999999999999999888899999999999999999999875432110
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..+.+...+.. ....+.+.+..+...... + ..+.+.+++|||++.++...++.|++++++++.+
T Consensus 74 ------------~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~-~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~ 137 (323)
T 1sxj_B 74 ------------GVLELNASDDR--GIDVVRNQIKHFAQKKLH-L-PPGKHKIVILDEADSMTAGAQQALRRTMELYSNS 137 (323)
T ss_dssp ------------HEEEECTTSCC--SHHHHHTHHHHHHHBCCC-C-CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred ------------CEEEecCcccc--ChHHHHHHHHHHHhcccc-C-CCCCceEEEEECcccCCHHHHHHHHHHHhccCCC
Confidence 01222222211 122344455555422111 0 1235889999999999999999999999999888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+.+|++++.+..+.++++|||..+.|++++.+++..++..++.++++.++++.++.+++.++||+|.+++.++.+....
T Consensus 138 ~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~ 216 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH 216 (323)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887543
No 8
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.97 E-value=2e-30 Score=205.11 Aligned_cols=211 Identities=40% Similarity=0.654 Sum_probs=171.0
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
++|+++|+|.+|++++|++..++.+..++..++.++++|+||+|+|||++++.++..+.+......
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~-------------- 70 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDN-------------- 70 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGG--------------
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccc--------------
Confidence 589999999999999999999999999998887778999999999999999999997743321100
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
.+.+..... .......+.+..+....+. ....+.+++|||++.++....+.|++++++...+
T Consensus 71 -------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~ 132 (226)
T 2chg_A 71 -------------FIEMNASDE--RGIDVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS 132 (226)
T ss_dssp -------------EEEEETTCT--TCHHHHHHHHHHHHTSCCS---TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred -------------eEEeccccc--cChHHHHHHHHHHhcccCC---CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC
Confidence 011221111 1112233334444432221 1347889999999999999999999999998888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 240 (248)
..+|++++.+..+.+++.+|+..+.|++++.+++..++...+.+.++.++++++..++..++||+|.+++.++.++..+.
T Consensus 133 ~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~ 212 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE 212 (226)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred CeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred ccc
Q 025758 241 RFT 243 (248)
Q Consensus 241 ~~~ 243 (248)
.++
T Consensus 213 ~I~ 215 (226)
T 2chg_A 213 VVD 215 (226)
T ss_dssp CBC
T ss_pred eec
Confidence 444
No 9
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.97 E-value=2.6e-30 Score=220.43 Aligned_cols=222 Identities=22% Similarity=0.320 Sum_probs=173.1
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+|++||+|.+|++++|++.+++.|..++..++.++ ++|+||+|+||||+|+.+++.+.+....... .|..+
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~--------~~~~~ 76 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--------PCGVC 76 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSS--------CCSSS
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC--------CCccc
Confidence 69999999999999999999999999999988888 8999999999999999999988765421110 01111
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..|........++.+.+...... .....++.+..+.. .+ ..+.+.|++|||++.++....+.|++++++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~----~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~ 149 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRT--KVEDTRDLLDNVQY-AP----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSC--CSSCHHHHHHHTTS-CC----SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHhccCCCceEEecccccC--CHHHHHHHHHHHhh-cc----ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCc
Confidence 11111111112222333332211 11123444443332 22 1456889999999999999999999999998888
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.+|+++++...+.+++.+||..+.|++++.+++..++..++.++++.++++++..+++.++||+|.+.+.++.+...
T Consensus 150 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 (373)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887643
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.96 E-value=2.9e-28 Score=195.03 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=167.8
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR 80 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
+|+++|+|.++++++|++..++.+..++..++.++ ++|+||+|+||||+++.+++.+.+........ +..+
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--------~~~~ 83 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--------CGVC 83 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC--------CSCS
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------Cccc
Confidence 69999999999999999999999999998887766 99999999999999999999876543110000 1111
Q ss_pred ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
..+...........+.+..... .......+.+..+.. ....+.+.+++|||++.+++...+.|++.+++...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~ 156 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQY-----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 156 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCG--GGHHHHHHHHHSCCC-----SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHhccCCcceEEecCccc--ccHHHHHHHHHHhhh-----chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc
Confidence 0000000001111222222211 111122222222111 011346789999999999999999999999987778
Q ss_pred eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 240 (248)
..+|++++....+.+++.+|+..+.|++++.+++.+++...+.+++..++++.++.+++.++|++|.+.++++.+...+.
T Consensus 157 ~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~ 236 (250)
T 1njg_A 157 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 236 (250)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT
T ss_pred eEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC
Confidence 88999999988999999999999999999999999999999999999999999999999999999999999998875443
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.96 E-value=9e-29 Score=215.06 Aligned_cols=197 Identities=23% Similarity=0.337 Sum_probs=152.4
Q ss_pred CccccCCCCCcccccccHHHH---HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~---~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+|+++|||++|++++|+++++ +.|...+..++.++++|+|||||||||+|+++++.+.++
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~----------------- 77 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD----------------- 77 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-----------------
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-----------------
Confidence 799999999999999999999 899999999998889999999999999999999965211
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~ 158 (248)
+..+.....+. ..+.+.+........ ...+.++||||++.++...++.|++.+++
T Consensus 78 ---------------f~~l~a~~~~~---~~ir~~~~~a~~~~~-----~~~~~iLfIDEI~~l~~~~q~~LL~~le~-- 132 (447)
T 3pvs_A 78 ---------------VERISAVTSGV---KEIREAIERARQNRN-----AGRRTILFVDEVHRFNKSQQDAFLPHIED-- 132 (447)
T ss_dssp ---------------EEEEETTTCCH---HHHHHHHHHHHHHHH-----TTCCEEEEEETTTCC------CCHHHHHT--
T ss_pred ---------------eEEEEeccCCH---HHHHHHHHHHHHhhh-----cCCCcEEEEeChhhhCHHHHHHHHHHHhc--
Confidence 01222222222 123333333322111 23678999999999999999999999997
Q ss_pred CCeeEEEEecCC--CcccHHHhhhhheeeecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHccccHHHHH
Q 025758 159 ASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK-------EGLQLPSGFATRLAEKSNRSLRRAI 229 (248)
Q Consensus 159 ~~~~~Il~t~~~--~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~-------~~~~~~~~~~~~l~~~~~g~~r~~~ 229 (248)
....+|++|+.. ..+.+++.|||.++.|++++.+++..++...+.+ +++.+++++++.|++.++||+|.++
T Consensus 133 ~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 346677776544 3688999999999999999999999999999887 5677999999999999999999999
Q ss_pred HHHHHHhhhcc
Q 025758 230 LSFETCRVQQL 240 (248)
Q Consensus 230 ~~l~~~~~~~~ 240 (248)
+.|+.+...+.
T Consensus 213 n~Le~a~~~a~ 223 (447)
T 3pvs_A 213 NTLEMMADMAE 223 (447)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 12
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.96 E-value=7.5e-28 Score=202.62 Aligned_cols=203 Identities=20% Similarity=0.200 Sum_probs=159.0
Q ss_pred cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758 16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
..++++++.|...+..++.+| ++|+||+|+|||++|+.+|+.+.|........ |+.|..|........++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~--------c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS--------CGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC--------CSCSHHHHHHHHTCCTTE
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCC--------CCCCHHHHHHhcCCCCCE
Confidence 457889999999999999998 99999999999999999999998876422111 333333333333344555
Q ss_pred eeeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758 95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV 173 (248)
Q Consensus 95 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~ 173 (248)
..+.++.. .......+++.++.+.. .+. .++++|+||||+|.|+.+++++|++++|+++.++.||++|+++..+
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~-~~~----~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNE-HAR----LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTS-CCT----TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhh-ccc----cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 56655421 11222335555544332 222 4578999999999999999999999999999999999999999999
Q ss_pred cHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758 174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 174 ~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 236 (248)
+++++|||..+.|++|+.+++.+++..++ .++++.+..++..++|++|.+++.++...
T Consensus 152 ~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 152 LATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDN 209 (334)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHH
T ss_pred cHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccch
Confidence 99999999999999999999999998654 67899999999999999999999887654
No 13
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=1.1e-28 Score=218.80 Aligned_cols=209 Identities=24% Similarity=0.351 Sum_probs=154.1
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcC-----------------CCCeeEEECCCCCCHHHHHHHHHHHHcCCCc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-----------------DCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~-----------------~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~ 63 (248)
.+|+|||+|++|++++|++.+++.|..|+..+ ..++++|+||+|+|||++|+++|+.+..
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--- 103 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--- 103 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence 48999999999999999999999999988641 2345999999999999999999997621
Q ss_pred ccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCC---------cCCCCCCeeEE
Q 025758 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------DTKGKRGFKVL 134 (248)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~vi 134 (248)
.. +.+.+...... ....+.+......... .......+.|+
T Consensus 104 ~~-----------------------------i~in~s~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (516)
T 1sxj_A 104 DI-----------------------------LEQNASDVRSK--TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 152 (516)
T ss_dssp EE-----------------------------EEECTTSCCCH--HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred CE-----------------------------EEEeCCCcchH--HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence 11 11111111100 0011111100000000 00113567899
Q ss_pred EEeCCCCCCHHH---HHHHHHHHHHhcCCeeEEEEecCCC-cccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758 135 VLNEVDKLSREA---QHSLRRTMEKYSASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (248)
Q Consensus 135 iiDE~d~l~~~~---~~~ll~~le~~~~~~~~Il~t~~~~-~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 210 (248)
+|||+|.+.... .+.|++++++. ...+|+++++.. ..++++++||..+.|++|+.+++.+++..++.++++.++
T Consensus 153 iIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~ 230 (516)
T 1sxj_A 153 IMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230 (516)
T ss_dssp EECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred EEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 999999987543 37788888763 456888888765 556789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHhhhcccccCC
Q 025758 211 SGFATRLAEKSNRSLRRAILSFETCRVQQLRFTMP 245 (248)
Q Consensus 211 ~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~~~ 245 (248)
++++..|++.++||+|.+++.|+.++.....++.+
T Consensus 231 ~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~ 265 (516)
T 1sxj_A 231 PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHE 265 (516)
T ss_dssp TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTT
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchH
Confidence 99999999999999999999999988766555544
No 14
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.94 E-value=5.8e-26 Score=191.32 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=147.3
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhc-----CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
.|.+||+|.+|++++|++.+++.+..++.. +..++++|+||+|||||++|+.++..+..+ .+.+++
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~---~~~~~~------ 88 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN---IKTTAA------ 88 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC---EEEEEG------
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEecc------
Confidence 699999999999999999999999888863 334569999999999999999999865221 111110
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~ 156 (248)
... ......... +.. ...+.+++|||++.+.+..++.|++.+++
T Consensus 89 -----------------------~~~--~~~~~~~~~---~~~--------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~ 132 (338)
T 3pfi_A 89 -----------------------PMI--EKSGDLAAI---LTN--------LSEGDILFIDEIHRLSPAIEEVLYPAMED 132 (338)
T ss_dssp -----------------------GGC--CSHHHHHHH---HHT--------CCTTCEEEEETGGGCCHHHHHHHHHHHHT
T ss_pred -----------------------hhc--cchhHHHHH---HHh--------ccCCCEEEEechhhcCHHHHHHHHHHHHh
Confidence 000 011111221 221 23567999999999999999999999987
Q ss_pred hcC------------------CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758 157 YSA------------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (248)
Q Consensus 157 ~~~------------------~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l 217 (248)
... ...+|++||....+.+++++|+ ..+.|++|+.+++..++...+...++.+++++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l 212 (338)
T 3pfi_A 133 YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEI 212 (338)
T ss_dssp SCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred ccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 531 2468888999889999999999 899999999999999999999999999999999999
Q ss_pred HHHccccHHHHHHHHHHHh
Q 025758 218 AEKSNRSLRRAILSFETCR 236 (248)
Q Consensus 218 ~~~~~g~~r~~~~~l~~~~ 236 (248)
+..+.|++|.+.+.++.+.
T Consensus 213 ~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 213 AKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp HHTTTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHH
Confidence 9999999999999998864
No 15
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.94 E-value=4.4e-26 Score=194.08 Aligned_cols=233 Identities=19% Similarity=0.210 Sum_probs=153.0
Q ss_pred CccccCCCCC-cccccccHHHHHH---HHHHhhcCCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758 2 LWVDKYRPKT-LDQVIVHQDIAQN---LKKLVTEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75 (248)
Q Consensus 2 ~~~~ky~p~~-~~~lig~~~~~~~---l~~~~~~~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~ 75 (248)
.+.++|+|.. |++++|++.+++. +...+..+..+ +++|+||||+|||++|++++..+.+.. ..+.+.+..+.
T Consensus 32 ~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~-~~~~~~~~~~~- 109 (368)
T 3uk6_A 32 GLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDT-PFTAIAGSEIF- 109 (368)
T ss_dssp CBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSC-CEEEEEGGGGS-
T ss_pred CcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccC-Ccccccchhhh-
Confidence 5678999999 9999999998776 45555666654 599999999999999999999875321 11222211100
Q ss_pred ccCCcccc-------------------------cceeee--cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCC
Q 025758 76 DAGSRNID-------------------------LELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGK 128 (248)
Q Consensus 76 ~~~~~~~~-------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (248)
+...... ..+... .......+.....+. ....+.+.+..........-...
T Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 110 -SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE-IKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp -CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC--
T ss_pred -hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc-cHHHHHHHHHHHHHHhhhhcccc
Confidence 0000000 000000 000000000000000 01123333333222110000001
Q ss_pred CCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec------------CCCcccHHHhhhhheeeecCCCHHHHHH
Q 025758 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVK 196 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~------------~~~~~~~~l~sR~~~i~~~~~~~~~~~~ 196 (248)
..+.|+||||++.|++..++.|++.++++... .+++.++ .+..+.++++|||..+.|++|+.+++..
T Consensus 188 ~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp -CBCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred ccCceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHH
Confidence 23579999999999999999999999987554 3444554 2457889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcc-ccHHHHHHHHHHHhhhc
Q 025758 197 VLEFIAKKEGLQLPSGFATRLAEKSN-RSLRRAILSFETCRVQQ 239 (248)
Q Consensus 197 il~~~~~~~~~~~~~~~~~~l~~~~~-g~~r~~~~~l~~~~~~~ 239 (248)
++..++..+++.+++++++.+++.+. ||+|.++++++.+...+
T Consensus 267 il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A 310 (368)
T 3uk6_A 267 ILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVC 310 (368)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 99999999999987654
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.93 E-value=1.9e-24 Score=180.89 Aligned_cols=194 Identities=24% Similarity=0.299 Sum_probs=149.9
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhc----C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
+|.+||+|.+|++++|++..++.+..++.. + ...+++|+||+|+|||++|+.++..+.++-
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~-------------- 66 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL-------------- 66 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE--------------
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE--------------
Confidence 478999999999999999998888877752 2 334599999999999999999998762110
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~ 156 (248)
+.+...... . ..+....+.. ....+.+++|||++.++...++.|++.+++
T Consensus 67 ------------------~~~~~~~~~--~---~~~l~~~l~~-------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~ 116 (324)
T 1hqc_A 67 ------------------RVTSGPAIE--K---PGDLAAILAN-------SLEEGDILFIDEIHRLSRQAEEHLYPAMED 116 (324)
T ss_dssp ------------------EEECTTTCC--S---HHHHHHHHTT-------TCCTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred ------------------EEEeccccC--C---hHHHHHHHHH-------hccCCCEEEEECCcccccchHHHHHHHHHh
Confidence 111111111 0 1222222222 023567999999999999999999999997
Q ss_pred hc------------------CCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758 157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (248)
Q Consensus 157 ~~------------------~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l 217 (248)
.. ....+|++||....+.+++.+|+ ..+.|++|+.+++..++...+...++.+++++++.+
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l 196 (324)
T 1hqc_A 117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI 196 (324)
T ss_dssp SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 53 23568889999999999999999 699999999999999999999988999999999999
Q ss_pred HHHccccHHHHHHHHHHHhhhc
Q 025758 218 AEKSNRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 218 ~~~~~g~~r~~~~~l~~~~~~~ 239 (248)
+..++|++|.+.++++.+...+
T Consensus 197 ~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 197 GRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp HHHSCSCHHHHHHHHHHHTTTS
T ss_pred HHHccCCHHHHHHHHHHHHHHH
Confidence 9999999999999998876544
No 17
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.93 E-value=3.4e-24 Score=187.43 Aligned_cols=108 Identities=20% Similarity=0.285 Sum_probs=98.5
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEe---------cC----CCcccHHHhhhhheeeecCCCHHHHHHH
Q 025758 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC---------NS----SSKVTEAIRSRCLNIRINSPTEEQIVKV 197 (248)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t---------~~----~~~~~~~l~sR~~~i~~~~~~~~~~~~i 197 (248)
++|++|||+++|+.+++++|++++|+++.. .||+.+ ++ +..++++++|||..++|++|+.+++.++
T Consensus 296 ~~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~i 374 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQI 374 (456)
T ss_dssp ECEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHH
T ss_pred ceEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHH
Confidence 469999999999999999999999998877 677777 44 6689999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhc
Q 025758 198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 239 (248)
|..++..+++.++++++..++..+ .|++|.++++++.+...+
T Consensus 375 L~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A 417 (456)
T 2c9o_A 375 IKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLA 417 (456)
T ss_dssp HHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999875444
No 18
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.93 E-value=2.6e-24 Score=181.05 Aligned_cols=190 Identities=20% Similarity=0.291 Sum_probs=144.7
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhcC-----CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~-----~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~ 77 (248)
|+++|+|++|++++|++.+++.+...+..+ ...+++|+||||+||||+++++|+.+.++-. ...|
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg------- 84 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSG------- 84 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEET-------
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEec-------
Confidence 599999999999999999999999888643 3356999999999999999999997633110 0000
Q ss_pred CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~ 157 (248)
........+...+ .. .....|++|||++.+.+...+.++..++..
T Consensus 85 ------------------------~~~~~~~~l~~~~---~~--------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 85 ------------------------PVLVKQGDMAAIL---TS--------LERGDVLFIDEIHRLNKAVEELLYSAIEDF 129 (334)
T ss_dssp ------------------------TTCCSHHHHHHHH---HH--------CCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred ------------------------hHhcCHHHHHHHH---HH--------ccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence 0000011111111 11 113469999999999988888888877653
Q ss_pred c------------------CCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 025758 158 S------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA 218 (248)
Q Consensus 158 ~------------------~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~ 218 (248)
. ....++..++.+..+.++++||| ..+.|++++.+++.+++.+.+...++.++++++.+|+
T Consensus 130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia 209 (334)
T 1in4_A 130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIA 209 (334)
T ss_dssp CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 2 11345667888889999999999 4789999999999999999998889999999999999
Q ss_pred HHccccHHHHHHHHHHHhh
Q 025758 219 EKSNRSLRRAILSFETCRV 237 (248)
Q Consensus 219 ~~~~g~~r~~~~~l~~~~~ 237 (248)
+.+.|++|.++++|+.+..
T Consensus 210 ~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 210 KRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp HTSTTCHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHH
Confidence 9999999999999987654
No 19
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.92 E-value=2e-24 Score=179.00 Aligned_cols=174 Identities=13% Similarity=0.178 Sum_probs=134.8
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-CCCcccceecccceeeccCCcccccceeeeccccee
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
||+++.+.|.+.++.++.++++|+||+|+|||++|++++..+. |.. ..++..
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~---------------------------~~~d~~ 53 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP---------------------------KASDVL 53 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------------------------CTTTEE
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc---------------------------cCCCEE
Confidence 7889999999999998855699999999999999999998531 100 112234
Q ss_pred eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccH
Q 025758 96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175 (248)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~ 175 (248)
.+.+++. ......+++.++.+. ..|. .++++|+||||+|.|+..++++|++++|+|+.++.||++|+++..+++
T Consensus 54 ~l~~~~~-~~~id~ir~li~~~~-~~p~----~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 54 EIDPEGE-NIGIDDIRTIKDFLN-YSPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp EECCSSS-CBCHHHHHHHHHHHT-SCCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred EEcCCcC-CCCHHHHHHHHHHHh-hccc----cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH
Confidence 5554421 122334566665554 3332 347899999999999999999999999999999999999999999999
Q ss_pred HHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (248)
Q Consensus 176 ~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 234 (248)
+++|| ++.|++++.+++.+++..++ + ++++.+ ..+.||+|.++++++.
T Consensus 128 tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 128 TIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp HHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred HHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence 99999 99999999999999999877 3 455554 4578999999988863
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.92 E-value=1e-23 Score=168.71 Aligned_cols=194 Identities=16% Similarity=0.239 Sum_probs=148.2
Q ss_pred CccccCCC-CCcccccc---cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758 2 LWVDKYRP-KTLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA 77 (248)
Q Consensus 2 ~~~~ky~p-~~~~~lig---~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~ 77 (248)
+|..+|+| .+|+++++ ++.+.+.+..++..+...+++|+||+|+||||+|+.++..+.........++...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~---- 91 (242)
T 3bos_A 16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH---- 91 (242)
T ss_dssp EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG----
T ss_pred CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH----
Confidence 68899999 89999997 46788899988877666679999999999999999999977543211111111000
Q ss_pred CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH--HHHHHHHHH
Q 025758 78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTME 155 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~--~~~ll~~le 155 (248)
.. .. .+.+. ....+.+++|||++.+.... +..|+++++
T Consensus 92 -----------------~~------~~------~~~~~-----------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~ 131 (242)
T 3bos_A 92 -----------------AS------IS------TALLE-----------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYN 131 (242)
T ss_dssp -----------------GG------SC------GGGGT-----------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred -----------------HH------HH------HHHHH-----------hccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence 00 00 00000 11356799999999887554 888999988
Q ss_pred HhcCCe--eEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHH
Q 025758 156 KYSASC--RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (248)
Q Consensus 156 ~~~~~~--~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r 226 (248)
...... .+|++++... ...+++.+|+ ..+.|++|+.+++.+++...+...++.+++++++.+++.++||+|
T Consensus 132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 211 (242)
T 3bos_A 132 RVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLR 211 (242)
T ss_dssp HHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Confidence 764333 4788877554 3568999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 025758 227 RAILSFETCRVQQ 239 (248)
Q Consensus 227 ~~~~~l~~~~~~~ 239 (248)
.+.+.++.+...+
T Consensus 212 ~l~~~l~~~~~~a 224 (242)
T 3bos_A 212 TLFDVLDRLDKAS 224 (242)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=174.29 Aligned_cols=198 Identities=18% Similarity=0.240 Sum_probs=141.6
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhc------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
.|+++|+|.+|++++|++.+++.|..++.. ....++||+||+|||||++|+++|..+.. ..+.++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~ 180 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNIS 180 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEee
Confidence 499999999999999999999999988721 12345999999999999999999986521 111111
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC-------
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL------- 142 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l------- 142 (248)
+..+ .. ...+. ........+..... ..+.||+|||+|.|
T Consensus 181 ~~~l---------------------~~---~~~g~-~~~~~~~~~~~a~~---------~~~~il~iDEid~l~~~~~~~ 226 (389)
T 3vfd_A 181 AASL---------------------TS---KYVGE-GEKLVRALFAVARE---------LQPSIIFIDQVDSLLCERREG 226 (389)
T ss_dssp SCCC--------------------------------CHHHHHHHHHHHHH---------SSSEEEEEETGGGGC------
T ss_pred HHHh---------------------hc---cccch-HHHHHHHHHHHHHh---------cCCeEEEEECchhhcccCCCc
Confidence 1000 00 00010 11123333443332 24579999999887
Q ss_pred ----CHHHHHHHHHHHHHhc----CCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758 143 ----SREAQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (248)
Q Consensus 143 ----~~~~~~~ll~~le~~~----~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 213 (248)
....++.|+..++... ....+|.+||.+..+.+++++|| ..+.|+.|+.+++..++..++...+..++++.
T Consensus 227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~ 306 (389)
T 3vfd_A 227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKE 306 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 2345667888887553 33568888999999999999999 48999999999999999999999999999999
Q ss_pred HHHHHHHccccHHHHH-HHHHHHh
Q 025758 214 ATRLAEKSNRSLRRAI-LSFETCR 236 (248)
Q Consensus 214 ~~~l~~~~~g~~r~~~-~~l~~~~ 236 (248)
+..++..+.|..+..+ .+++.+.
T Consensus 307 ~~~la~~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 307 LAQLARMTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999988655444 4444433
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.90 E-value=1.8e-22 Score=166.96 Aligned_cols=198 Identities=18% Similarity=0.228 Sum_probs=142.7
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhc------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
.|+++|.|.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+.++ .+.++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~ 86 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT---FLNIS 86 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEee
Confidence 489999999999999999999999987732 123459999999999999999999965211 11111
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------ 143 (248)
+ ... . ....+ .........+..... ..+.+++|||+|.+.
T Consensus 87 ~-------~~l--------------~---~~~~~-~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~ 132 (297)
T 3b9p_A 87 A-------ASL--------------T---SKYVG-DGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSS 132 (297)
T ss_dssp S-------TTT--------------S---SSSCS-CHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC---
T ss_pred H-------HHH--------------h---hcccc-hHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccC
Confidence 1 000 0 00001 111223333333322 256799999998773
Q ss_pred -----HHHHHHHHHHHHHhcC-----CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 025758 144 -----REAQHSLRRTMEKYSA-----SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (248)
Q Consensus 144 -----~~~~~~ll~~le~~~~-----~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~ 212 (248)
....+.|+..++.... ...+|.+||.+..+.+++.+|| ..+.++.|+.++...++...+.+.+..++++
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~ 212 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTE 212 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHH
Confidence 3456778888887643 3568888999999999999999 6899999999999999999998888889999
Q ss_pred HHHHHHHHccccHH-HHHHHHHHHh
Q 025758 213 FATRLAEKSNRSLR-RAILSFETCR 236 (248)
Q Consensus 213 ~~~~l~~~~~g~~r-~~~~~l~~~~ 236 (248)
.+..++..+.|..+ .+.++++.+.
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALAKDAA 237 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999988655 4445555544
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.90 E-value=8.7e-23 Score=170.91 Aligned_cols=198 Identities=18% Similarity=0.203 Sum_probs=143.7
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhh----------cC-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------EQ-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~----------~~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
.|+++|.+.+|++++|++.+++.|..++. .+ .. .+++|+||||||||++|+++|..+..+ .+.++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~v~ 83 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS 83 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC---EEEEc
Confidence 47899999999999999999999998772 22 22 349999999999999999999976211 11111
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (248)
+.. +.....+ .....+...+..... ..+.||+|||+|.+..
T Consensus 84 ~~~------------------------l~~~~~g-~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~ 129 (322)
T 3eie_A 84 SSD------------------------LVSKWMG-ESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG 129 (322)
T ss_dssp HHH------------------------HHTTTGG-GHHHHHHHHHHHHHH---------TSSEEEEEECGGGGSCC----
T ss_pred hHH------------------------Hhhcccc-hHHHHHHHHHHHHHh---------cCCeEEEechhhhhhccCCCC
Confidence 100 0000001 111223344443332 2567999999998743
Q ss_pred ------HHHHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758 145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (248)
Q Consensus 145 ------~~~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 214 (248)
...+.++..++.. ..+..+|.+||.+..+.+++++|+ ..+.++.|+.++...++...+.+.+..++++.+
T Consensus 130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l 209 (322)
T 3eie_A 130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDY 209 (322)
T ss_dssp --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHH
T ss_pred cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHH
Confidence 3467788888754 334677888999999999999999 689999999999999999999888888899999
Q ss_pred HHHHHHccc-cHHHHHHHHHHHh
Q 025758 215 TRLAEKSNR-SLRRAILSFETCR 236 (248)
Q Consensus 215 ~~l~~~~~g-~~r~~~~~l~~~~ 236 (248)
..|+..+.| +.+++.++++.+.
T Consensus 210 ~~la~~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 210 RTLGAMTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999876 5666666665554
No 24
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=8.4e-23 Score=169.82 Aligned_cols=192 Identities=19% Similarity=0.270 Sum_probs=138.2
Q ss_pred cccccHHHHHHHHHHhh---------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758 14 QVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~---------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~ 78 (248)
+++|++.+++.+..++. .....+++|+||||||||++|+++|..+....... .+ ++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~---~~-~~~---- 103 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR---KG-HLV---- 103 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS---SC-CEE----
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC---CC-cEE----
Confidence 68999999998887653 22334599999999999999999999774322100 00 000
Q ss_pred CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC---------CHHHHHH
Q 025758 79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHS 149 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~ 149 (248)
.+.... +.....+. ........+... .+.+++|||+|.+ +...++.
T Consensus 104 ---------~~~~~~---l~~~~~g~-~~~~~~~~~~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~ 158 (309)
T 3syl_A 104 ---------SVTRDD---LVGQYIGH-TAPKTKEVLKRA------------MGGVLFIDEAYYLYRPDNERDYGQEAIEI 158 (309)
T ss_dssp ---------EECGGG---TCCSSTTC-HHHHHHHHHHHH------------TTSEEEEETGGGSCCCC---CCTHHHHHH
T ss_pred ---------EEcHHH---hhhhcccc-cHHHHHHHHHhc------------CCCEEEEEChhhhccCCCcccccHHHHHH
Confidence 000000 00001111 111122223221 2359999999977 7888999
Q ss_pred HHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Q 025758 150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS-- 221 (248)
Q Consensus 150 ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~-- 221 (248)
|++.+++...+..+|++++... .+.+++++|+ ..+.|++|+.+++..++...+.+.++.++++++..+++.+
T Consensus 159 Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~ 238 (309)
T 3syl_A 159 LLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGL 238 (309)
T ss_dssp HHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999998877788888887653 2458999999 8999999999999999999999999999999999999864
Q ss_pred ------cccHHHHHHHHHHHhhh
Q 025758 222 ------NRSLRRAILSFETCRVQ 238 (248)
Q Consensus 222 ------~g~~r~~~~~l~~~~~~ 238 (248)
.||+|.+.+.++.+...
T Consensus 239 ~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 239 RRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHH
T ss_pred hccCCCCCcHHHHHHHHHHHHHH
Confidence 49999999999988853
No 25
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.89 E-value=1.1e-21 Score=167.67 Aligned_cols=219 Identities=16% Similarity=0.164 Sum_probs=150.2
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhc----CCCC--eeEEECCCCCCHHHHHHHHHHHHcCC-Ccccceeccccee
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCP--HLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWK 74 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~-~~~~~~~~~~~~~ 74 (248)
+|..+|+| ++++|++...+.+..++.. +... +++|+||+|+||||+++.+++.+... ....+.+++.
T Consensus 9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~--- 82 (389)
T 1fnn_A 9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF--- 82 (389)
T ss_dssp GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT---
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc---
Confidence 47789999 7899999988888777754 3333 79999999999999999999977544 2222222221
Q ss_pred eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHH
Q 025758 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM 154 (248)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~l 154 (248)
........ .......++......+.............+.. .+.+.+++|||++.++....+.|++++
T Consensus 83 ----~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDE~~~l~~~~~~~L~~~~ 149 (389)
T 1fnn_A 83 ----IYRNFTAI-IGEIARSLNIPFPRRGLSRDEFLALLVEHLRE--------RDLYMFLVLDDAFNLAPDILSTFIRLG 149 (389)
T ss_dssp ----TCCSHHHH-HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--------TTCCEEEEEETGGGSCHHHHHHHHHHT
T ss_pred ----cCCCHHHH-HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh--------cCCeEEEEEECccccchHHHHHHHHHH
Confidence 10000000 00000001111111111111212222222222 235789999999999999999999999
Q ss_pred HHhc----CCeeEEEEecCC---CcccHHHhhhhh--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc--
Q 025758 155 EKYS----ASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS-- 221 (248)
Q Consensus 155 e~~~----~~~~~Il~t~~~---~~~~~~l~sR~~--~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~~-- 221 (248)
+... .+..+|++++++ ..+.+.+.+|+. .+.|++++.+++..++..++... ...+++++++.+++.+
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA 229 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence 7654 367889999988 567888999985 79999999999999999988762 3368899999999999
Q ss_pred -------cccHHHHHHHHHHHhhhc
Q 025758 222 -------NRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 222 -------~g~~r~~~~~l~~~~~~~ 239 (248)
.|++|.++++++.+...+
T Consensus 230 ~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 230 QTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHH
Confidence 899999999999877543
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.89 E-value=9.9e-22 Score=166.49 Aligned_cols=199 Identities=18% Similarity=0.194 Sum_probs=138.0
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhh----------c-CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~----------~-~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
.|+.++.+.+|++++|++.+++.|..++. . ...+ +++|+||||||||++|+++|..+..+ .+.++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~v~ 116 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS 116 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC---EEEee
Confidence 36778999999999999999999998762 1 1223 49999999999999999999976221 11111
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (248)
+..+ .. ...+. ........+..... ..+.||+|||+|.+.+
T Consensus 117 ~~~l---------------------~~---~~~g~-~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~ 162 (355)
T 2qp9_X 117 SSDL---------------------VS---KWMGE-SEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG 162 (355)
T ss_dssp HHHH---------------------HS---CC----CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC-----
T ss_pred HHHH---------------------hh---hhcch-HHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCC
Confidence 1000 00 00011 11223333433322 2567999999998863
Q ss_pred ------HHHHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758 145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (248)
Q Consensus 145 ------~~~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 214 (248)
...+.|+..++.. .....+|.+||.+..+.+++++|| ..+.++.|+.+++..++..++.+.+..+++..+
T Consensus 163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l 242 (355)
T 2qp9_X 163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY 242 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 2467788888754 345678888999999999999999 789999999999999999999888777889999
Q ss_pred HHHHHHccc-cHHHHHHHHHHHhh
Q 025758 215 TRLAEKSNR-SLRRAILSFETCRV 237 (248)
Q Consensus 215 ~~l~~~~~g-~~r~~~~~l~~~~~ 237 (248)
+.|+..+.| +.+++.++++.+..
T Consensus 243 ~~la~~t~G~sg~dl~~l~~~A~~ 266 (355)
T 2qp9_X 243 RTLGAMTEGYSGSDIAVVVKDALM 266 (355)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999987 66666666666553
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=166.66 Aligned_cols=197 Identities=16% Similarity=0.213 Sum_probs=139.6
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhc------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
++++|.|.+|++++|++.+++.|..++.. ....+++|+||+|||||++|+++|..+.+ ..+.+++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~i~~ 150 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA---TFFSISA 150 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC---EEEEEEG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC---eEEEEeh
Confidence 67899999999999999999999887742 22345999999999999999999986521 1111111
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------- 143 (248)
.. +.....+ .........+.... ...+.+|+|||+|.|.
T Consensus 151 ~~------------------------l~~~~~g-~~~~~~~~~~~~a~---------~~~~~vl~iDEid~l~~~~~~~~ 196 (357)
T 3d8b_A 151 SS------------------------LTSKWVG-EGEKMVRALFAVAR---------CQQPAVIFIDEIDSLLSQRGDGE 196 (357)
T ss_dssp GG------------------------GCCSSTT-HHHHHHHHHHHHHH---------HTCSEEEEEETHHHHTBC-----
T ss_pred HH------------------------hhccccc-hHHHHHHHHHHHHH---------hcCCeEEEEeCchhhhccCCCCc
Confidence 00 0000001 01112233333222 1256799999998762
Q ss_pred ----HHHHHHHHHHHHHh----cCCeeEEEEecCCCcccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758 144 ----REAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (248)
Q Consensus 144 ----~~~~~~ll~~le~~----~~~~~~Il~t~~~~~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 214 (248)
....+.++..++.. .....+|.+||.+..+.+++++||. .+.++.|+.++...++...+...++.++++.+
T Consensus 197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l 276 (357)
T 3d8b_A 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI 276 (357)
T ss_dssp -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH
Confidence 23456677777643 2346788889998899999999995 88999999999999999999888888999999
Q ss_pred HHHHHHccc-cHHHHHHHHHHHh
Q 025758 215 TRLAEKSNR-SLRRAILSFETCR 236 (248)
Q Consensus 215 ~~l~~~~~g-~~r~~~~~l~~~~ 236 (248)
..+++.+.| +.+.+..+++.+.
T Consensus 277 ~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 277 EQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999887 5555555555543
No 28
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.88 E-value=9.6e-22 Score=167.83 Aligned_cols=218 Identities=20% Similarity=0.253 Sum_probs=146.2
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhc----CCCCeeEEECCCCCCHHHHHHHHHHHHcCC------Ccccceecccc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP------GAEKVKVENKT 72 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~~~~~ill~Gp~G~GKTtla~~ia~~l~~~------~~~~~~~~~~~ 72 (248)
|..+|.| ++++|++...+.+..++.. +...+++|+||+|+||||+++.++..+... ....+.+++
T Consensus 12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~-- 86 (387)
T 2v1u_A 12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA-- 86 (387)
T ss_dssp HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET--
T ss_pred cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC--
Confidence 5567888 8899999999999988753 344459999999999999999999876332 111111211
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--HHHHH
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSL 150 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--~~~~l 150 (248)
........+ .......++......+.............+.. .+.+.+++|||++.+... .+..+
T Consensus 87 -----~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDEi~~l~~~~~~~~~l 152 (387)
T 2v1u_A 87 -----RHRETPYRV-ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR--------LRGIYIIVLDEIDFLPKRPGGQDLL 152 (387)
T ss_dssp -----TTSCSHHHH-HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT--------SCSEEEEEEETTTHHHHSTTHHHHH
T ss_pred -----CcCCCHHHH-HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc--------cCCeEEEEEccHhhhcccCCCChHH
Confidence 111000000 00000001111111111111112222222221 235789999999988766 67788
Q ss_pred HHHHHHh-----cCCeeEEEEecCC---CcccHHHhhhh--heeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHH
Q 025758 151 RRTMEKY-----SASCRLILCCNSS---SKVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLA 218 (248)
Q Consensus 151 l~~le~~-----~~~~~~Il~t~~~---~~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~--~~~~~~~~~~~~l~ 218 (248)
..+++.. .....+|+++|.. ..+.+.+.+|+ ..+.|++++.+++..++...+.. .+..+++++++.++
T Consensus 153 ~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~ 232 (387)
T 2v1u_A 153 YRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA 232 (387)
T ss_dssp HHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH
T ss_pred HhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 8888755 3345788888887 57889999999 68999999999999999999876 46678899999999
Q ss_pred HHcc---ccHHHHHHHHHHHhhhc
Q 025758 219 EKSN---RSLRRAILSFETCRVQQ 239 (248)
Q Consensus 219 ~~~~---g~~r~~~~~l~~~~~~~ 239 (248)
+.+. |++|.++++++.+...+
T Consensus 233 ~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 233 ALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHH
Confidence 9998 99999999999887543
No 29
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-20 Score=157.81 Aligned_cols=198 Identities=17% Similarity=0.195 Sum_probs=140.6
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhh----------c-CCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~----------~-~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
.+.++.+.+|+|++|++.+++.|...+. . ... .+++|+||||||||++|+++|..+.+. ..+.+++
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~ 79 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISS 79 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEEC
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEh
Confidence 3457788999999999999999988763 1 122 349999999999999999999865111 1111111
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------- 143 (248)
. . +.....+. ....+...+..... ..+.||+|||+|.+.
T Consensus 80 ~---------------------~---l~~~~~g~-~~~~~~~lf~~a~~---------~~~~vl~iDEid~l~~~~~~~~ 125 (322)
T 1xwi_A 80 S---------------------D---LVSKWLGE-SEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENE 125 (322)
T ss_dssp C---------------------S---SCCSSCCS-CHHHHHHHHHHHHH---------TSSEEEEEETTTGGGCCSSSCC
T ss_pred H---------------------H---HHhhhhhH-HHHHHHHHHHHHHh---------cCCcEEEeecHHHhcccccccc
Confidence 0 0 00001111 12234444443332 256799999999872
Q ss_pred ----HHHHHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758 144 ----REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (248)
Q Consensus 144 ----~~~~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 215 (248)
....+.|+..++.. ..+..+|.+||.+..+.+++++|+ ..+.++.|+.++...++...+.+.+..+++..+.
T Consensus 126 ~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~ 205 (322)
T 1xwi_A 126 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFR 205 (322)
T ss_dssp TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 23456677777754 344678888999999999999999 6899999999999999999998888778899999
Q ss_pred HHHHHccc-cHHHHHHHHHHHh
Q 025758 216 RLAEKSNR-SLRRAILSFETCR 236 (248)
Q Consensus 216 ~l~~~~~g-~~r~~~~~l~~~~ 236 (248)
.|++.+.| +.+++.++++.+.
T Consensus 206 ~la~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 206 ELGRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHH
Confidence 99999876 4666666666554
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.87 E-value=2.9e-21 Score=156.56 Aligned_cols=201 Identities=17% Similarity=0.245 Sum_probs=137.4
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhh---c--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~---~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
+|.++|.+.+|++++|++.+++.+...+. . ...+ +++|+|||||||||+|+++++.+..+ .+.++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~ 77 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTIS 77 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEEC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEe
Confidence 69999999999999999999887776542 1 1223 49999999999999999999976321 12222
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (248)
+..+. ....+. ........+.... ...+.+++|||+|.+..
T Consensus 78 ~~~~~------------------------~~~~~~-~~~~~~~~~~~a~---------~~~~~il~iDeid~l~~~~~~~ 123 (257)
T 1lv7_A 78 GSDFV------------------------EMFVGV-GASRVRDMFEQAK---------KAAPCIIFIDEIDAVGRQRGAG 123 (257)
T ss_dssp SCSST------------------------TSCCCC-CHHHHHHHHHHHH---------TTCSEEEEETTHHHHTCCCSTT
T ss_pred HHHHH------------------------HHhhhh-hHHHHHHHHHHHH---------HcCCeeehhhhhhhhccCCCCC
Confidence 21110 000011 1122334444332 12467999999976532
Q ss_pred ---------HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758 145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (248)
Q Consensus 145 ---------~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 210 (248)
...+.+++.++.. .....+|.+||.+..+.+++.+ |+ ..+.++.|+.++..+++...+.+.++. +
T Consensus 124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~ 202 (257)
T 1lv7_A 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-P 202 (257)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-T
T ss_pred cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-c
Confidence 2345666666654 2345788889999889899887 76 578999999999999998877654433 2
Q ss_pred HHHHHHHHHHccc-cHHHHHHHHHHHhhhcc
Q 025758 211 SGFATRLAEKSNR-SLRRAILSFETCRVQQL 240 (248)
Q Consensus 211 ~~~~~~l~~~~~g-~~r~~~~~l~~~~~~~~ 240 (248)
+..+..++..+.| +.|++.++++.+...+.
T Consensus 203 ~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 203 DIDAAIIARGTPGFSGADLANLVNEAALFAA 233 (257)
T ss_dssp TCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 2337788888999 99999999888776544
No 31
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.87 E-value=1.8e-21 Score=169.29 Aligned_cols=195 Identities=16% Similarity=0.272 Sum_probs=137.3
Q ss_pred Cccccc-c--cHHHHHHHHHHhhcCC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce
Q 025758 11 TLDQVI-V--HQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL 86 (248)
Q Consensus 11 ~~~~li-g--~~~~~~~l~~~~~~~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (248)
+|++++ | +..+...+..+..... .++++|+||+|+||||+|+++++.+.....+. .+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~------~v------------- 163 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL------RV------------- 163 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS------CE-------------
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC------eE-------------
Confidence 889988 5 5556666676665533 45599999999999999999999763321110 00
Q ss_pred eeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCC-C-CCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcC-Ce
Q 025758 87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK-G-KRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSA-SC 161 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~-~~ 161 (248)
+.+..... ..+....+.......+. . ...+.+++|||++.+.. ..+..|+++++.... +.
T Consensus 164 --------~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~ 228 (440)
T 2z4s_A 164 --------MYITSEKF-------LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK 228 (440)
T ss_dssp --------EEEEHHHH-------HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTC
T ss_pred --------EEeeHHHH-------HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCC
Confidence 01110000 01111111100000000 0 11567999999998875 788899999987644 35
Q ss_pred eEEEEecCCCc----ccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758 162 RLILCCNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234 (248)
Q Consensus 162 ~~Il~t~~~~~----~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 234 (248)
.+|++|+++.. +.++++||+ .++.+++|+.+++..++.+.+...++.++++++++|+..++||+|.+.+.|+.
T Consensus 229 ~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~ 308 (440)
T 2z4s_A 229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_dssp EEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 67777776543 789999999 68999999999999999999999999999999999999999999999999998
Q ss_pred Hhhhc
Q 025758 235 CRVQQ 239 (248)
Q Consensus 235 ~~~~~ 239 (248)
+...+
T Consensus 309 ~~~~a 313 (440)
T 2z4s_A 309 LLVYK 313 (440)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
No 32
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.87 E-value=7.4e-22 Score=164.18 Aligned_cols=202 Identities=16% Similarity=0.262 Sum_probs=139.1
Q ss_pred ccccccHHHHHHHHHHhhcC--------CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~~--------~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
++++|+..+++.+...+..+ +.. +++|+||||||||++|+++++.+.+.....+.+++..+.. ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~----~~-- 90 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME----KH-- 90 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS----TT--
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc----cc--
Confidence 45789999999888877643 223 4999999999999999999997755443333333221110 00
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----- 158 (248)
.....++..+...+........+. +.. ..+.+++|||++.+++..++.|++++++..
T Consensus 91 ------~~~~l~g~~~~~~~~~~~~~~~~~---~~~---------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~ 152 (311)
T 4fcw_A 91 ------AVSRLIGAPPGYVGYEEGGQLTEA---VRR---------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH 152 (311)
T ss_dssp ------HHHHHHCCCTTSTTTTTCCHHHHH---HHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT
T ss_pred ------cHHHhcCCCCccccccccchHHHH---HHh---------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC
Confidence 000011111111111111111111 111 134699999999999999999999999764
Q ss_pred ------CCeeEEEEecC--------------------------CCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHc
Q 025758 159 ------ASCRLILCCNS--------------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE 205 (248)
Q Consensus 159 ------~~~~~Il~t~~--------------------------~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~ 205 (248)
.++.+|++||. ...+.+++.+|+ ..+.|.+|+.+++..++...+.+.
T Consensus 153 ~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 153 GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 24558888888 335778899999 789999999999999998876652
Q ss_pred ---------CCCCCHHHHHHHHHHc---cccHHHHHHHHHHHhhh
Q 025758 206 ---------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRVQ 238 (248)
Q Consensus 206 ---------~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~~ 238 (248)
.+.+++++++.+++.. .||+|.+.+.++.++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 233 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred HHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence 3468899999999865 49999999999887753
No 33
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.87 E-value=9.7e-21 Score=164.85 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=140.9
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhh----------c-CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~----------~-~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
++.++.+.+|++++|++.+++.|..++. . .. ..+++|+||||||||++|+++|..+.+ ...+.+++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~v~~ 201 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISS 201 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS--SEEEEECC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeH
Confidence 5678999999999999999999998762 1 12 234999999999999999999986511 11111111
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------- 143 (248)
.. .... ..+.. ...+...+..... ..+.||+|||+|.+.
T Consensus 202 ~~---------------------l~~~---~~g~~-~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~~ 247 (444)
T 2zan_A 202 SD---------------------LVSK---WLGES-EKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENE 247 (444)
T ss_dssp C---------------------------------C-CCTHHHHHHHHHH---------SCSEEEEESCTTTTCCCSSCCC
T ss_pred HH---------------------HHhh---hcchH-HHHHHHHHHHHHH---------cCCeEEEEechHhhccCCCCcc
Confidence 00 0000 00000 0113444443332 256799999999873
Q ss_pred ----HHHHHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758 144 ----REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (248)
Q Consensus 144 ----~~~~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 215 (248)
....+.|+..++.. ..+..||.+||.+..+.+++++|| ..+.++.|+.+++..++..++.+.+..+++..+.
T Consensus 248 ~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~ 327 (444)
T 2zan_A 248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQ 327 (444)
T ss_dssp CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 24566677777653 345678889999999999999999 6899999999999999999988877778899999
Q ss_pred HHHHHccc-cHHHHHHHHHHHh
Q 025758 216 RLAEKSNR-SLRRAILSFETCR 236 (248)
Q Consensus 216 ~l~~~~~g-~~r~~~~~l~~~~ 236 (248)
.|+..+.| +.+++.++++.+.
T Consensus 328 ~la~~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 328 ELGRKTDGYSGADISIIVRDAL 349 (444)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHH
Confidence 99999987 5666666666655
No 34
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.86 E-value=7.5e-21 Score=159.21 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=134.5
Q ss_pred CCccccc-c--cHHHHHHHHHHhhcCC--CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 10 KTLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 10 ~~~~~li-g--~~~~~~~l~~~~~~~~--~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
.+|++++ | +..+...+..++..+. ..+++|+||+|+||||+|+++++.+.......+.+++
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-------------- 73 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-------------- 73 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH--------------
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH--------------
Confidence 5788887 4 5667777777776543 3459999999999999999999977432111111111
Q ss_pred ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCC-CCCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhc-CC
Q 025758 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK-GKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYS-AS 160 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~-~~ 160 (248)
... ..+....+.......+. ....+.+++|||++.+.. ..+..++.+++... .+
T Consensus 74 ---------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~ 131 (324)
T 1l8q_A 74 ---------------DDF-------AQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE 131 (324)
T ss_dssp ---------------HHH-------HHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT
T ss_pred ---------------HHH-------HHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC
Confidence 000 00001000000000000 001356999999998875 67888999988653 34
Q ss_pred eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758 161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 161 ~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 233 (248)
..+|++++++. .+.+++.+|+ ..+.|++ +.+++..++...+...++.++++++++|++.+ ||+|.+.+.|+
T Consensus 132 ~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~ 209 (324)
T 1l8q_A 132 KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIK 209 (324)
T ss_dssp CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHH
T ss_pred CeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHH
Confidence 56777776553 5789999999 6899999 99999999999999999999999999999999 99999999998
Q ss_pred HHhhh
Q 025758 234 TCRVQ 238 (248)
Q Consensus 234 ~~~~~ 238 (248)
.++..
T Consensus 210 ~~~~~ 214 (324)
T 1l8q_A 210 LIKLK 214 (324)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87754
No 35
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.6e-20 Score=155.91 Aligned_cols=197 Identities=21% Similarity=0.288 Sum_probs=132.8
Q ss_pred cccCCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
+++-...+|+|+.|.+++++.|+..+. -| +.| ++||+||||||||.+|+++|+++..+- +.+.+
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~ 215 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSG 215 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEG
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEh
Confidence 344456899999999999999988763 12 233 499999999999999999999873211 11111
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------ 144 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------ 144 (248)
. .+.....| .....+++.+..... ..|.||+|||+|.+.+
T Consensus 216 s------------------------~l~sk~vG-ese~~vr~lF~~Ar~---------~aP~IIFiDEiDai~~~R~~~~ 261 (405)
T 4b4t_J 216 A------------------------ELVQKYIG-EGSRMVRELFVMARE---------HAPSIIFMDEIDSIGSTRVEGS 261 (405)
T ss_dssp G------------------------GGSCSSTT-HHHHHHHHHHHHHHH---------TCSEEEEEESSSCCTTSCSCSS
T ss_pred H------------------------Hhhccccc-hHHHHHHHHHHHHHH---------hCCceEeeecchhhccCCCCCC
Confidence 0 00011111 122235555554443 2567999999998742
Q ss_pred -----H---HHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 145 -----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 145 -----~---~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
. ..+.|+..++.. ..++.+|.+||++..+.+++++ |+ ..|.|+.|+.++..+|++.++.+.++. ++
T Consensus 262 ~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~d 340 (405)
T 4b4t_J 262 GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RG 340 (405)
T ss_dssp SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SS
T ss_pred CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-cc
Confidence 1 234555556544 3346789999999999999987 77 689999999999999998877655443 12
Q ss_pred HHHHHHHHHccc-cHHHHHHHHHHHhhh
Q 025758 212 GFATRLAEKSNR-SLRRAILSFETCRVQ 238 (248)
Q Consensus 212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~~ 238 (248)
-.++.|++.+.| +.+++-++++.+...
T Consensus 341 vdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 341 INLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 237888888765 566666666665543
No 36
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1e-20 Score=156.71 Aligned_cols=200 Identities=10% Similarity=0.072 Sum_probs=128.9
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-------cccceecccceeeccCCcccccceeeecccce
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (248)
...|...+..++.++++|+||||||||++++.+++.+.... ...+.++|.... .+ ... .......
T Consensus 33 ~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~--t~-----~~~-~~~I~~~ 104 (318)
T 3te6_A 33 FLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA--GM-----DAL-YEKIWFA 104 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC---------HHH-HHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC--CH-----HHH-HHHHHHH
Confidence 33555566677778899999999999999999999885321 122333332111 00 000 0000000
Q ss_pred eeeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh---cCCeeEEEEecCC
Q 025758 95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SASCRLILCCNSS 170 (248)
Q Consensus 95 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~---~~~~~~Il~t~~~ 170 (248)
+ ..... .......+...+..... ....+.|++|||+|.+. .++.|+.+++-+ .....+|+++|+.
T Consensus 105 L--~g~~~~~~~~~~~L~~~f~~~~~-------~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 105 I--SKENLCGDISLEALNFYITNVPK-------AKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp H--SCCC--CCCCHHHHHHHHHHSCG-------GGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred h--cCCCCCchHHHHHHHHHHHHhhh-------ccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCc
Confidence 0 00000 00111223333332210 13367899999999998 667777777643 2235688888887
Q ss_pred C----cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--C---------------------------------CCC
Q 025758 171 S----KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--G---------------------------------LQL 209 (248)
Q Consensus 171 ~----~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~---------------------------------~~~ 209 (248)
+ .+.+.++||+ ..|.|++|+.+++.+|++.++... + ..+
T Consensus 174 d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 174 VTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred ccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 5 2556778998 579999999999999999998873 1 136
Q ss_pred CHHHHHHHHH---HccccHHHHHHHHHHHhhhcc
Q 025758 210 PSGFATRLAE---KSNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 210 ~~~~~~~l~~---~~~g~~r~~~~~l~~~~~~~~ 240 (248)
++++++++++ ...||+|.|+++|+.+...+.
T Consensus 254 ~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 254 NNKITQLIAKNVANVSGSTEKAFKICEAAVEISK 287 (318)
T ss_dssp CHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Confidence 8999999998 578999999999998886553
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=3e-21 Score=160.27 Aligned_cols=193 Identities=17% Similarity=0.292 Sum_probs=129.1
Q ss_pred cccccHHHHHHHHHHhhc--------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 14 QVIVHQDIAQNLKKLVTE--------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~~--------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
+++|++.+++.+...+.. ....+++|+||||||||++|++++..+.++ .+.+++..+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~---~~~i~~~~~~----- 87 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFT----- 87 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGGS-----
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEcchhcc-----
Confidence 479999999988877643 234459999999999999999999976221 1112111110
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH------------H
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA------------Q 147 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~------------~ 147 (248)
. .++. +........+.+. ..+..+.....+.|++|||+|.+.+.. +
T Consensus 88 -----------~---~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~ 145 (310)
T 1ofh_A 88 -----------E---VGYV----GKEVDSIIRDLTD----SAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ 145 (310)
T ss_dssp -----------S---CCSG----GGSTTHHHHHHHH----TTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHH
T ss_pred -----------c---CCcc----CccHHHHHHHHHH----HhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHH
Confidence 0 0010 1111111222222 111000001246799999999887544 7
Q ss_pred HHHHHHHHHhc----------CCeeEEEEe----cCCCcccHHHhhhh-heeeecCCCHHHHHHHHHH-----------H
Q 025758 148 HSLRRTMEKYS----------ASCRLILCC----NSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEF-----------I 201 (248)
Q Consensus 148 ~~ll~~le~~~----------~~~~~Il~t----~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~-----------~ 201 (248)
+.|++++++.. ....+|+++ +.+..+.+++.+|| ..+.|++|+.+++..++.. .
T Consensus 146 ~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~ 225 (310)
T 1ofh_A 146 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKAL 225 (310)
T ss_dssp HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHH
Confidence 88999998641 245566664 35567899999999 5799999999999999983 2
Q ss_pred HHHcC--CCCCHHHHHHHHHHc--------cccHHHHHHHHHHHh
Q 025758 202 AKKEG--LQLPSGFATRLAEKS--------NRSLRRAILSFETCR 236 (248)
Q Consensus 202 ~~~~~--~~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~ 236 (248)
+...+ +.++++++++|++.+ .||+|.+.+.++.+.
T Consensus 226 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 226 MATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 33344 368999999999988 699999999999876
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.85 E-value=5.6e-20 Score=149.09 Aligned_cols=195 Identities=20% Similarity=0.246 Sum_probs=125.9
Q ss_pred CCCcccccccHHHHHHHHHHhh---c---------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVT---E---------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~---~---------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~ 76 (248)
+.+|++++|++.+++.+..++. . ....+++|+||||||||++|++++..+..+ .+.+++..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~~~---- 74 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAGAE---- 74 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEETTT----
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEechHH----
Confidence 4789999999999998877653 1 223349999999999999999999976321 11111100
Q ss_pred cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------------H
Q 025758 77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------R 144 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~ 144 (248)
... .............+..... ..+.+++|||+|.+. .
T Consensus 75 -----------------~~~----~~~~~~~~~~~~~~~~a~~---------~~~~vl~iDeid~l~~~~~~~~~~~~~~ 124 (262)
T 2qz4_A 75 -----------------FVE----VIGGLGAARVRSLFKEARA---------RAPCIVYIDEIDAVGKKRSTTMSGFSNT 124 (262)
T ss_dssp -----------------TSS----SSTTHHHHHHHHHHHHHHH---------TCSEEEEEECC-----------------
T ss_pred -----------------HHh----hccChhHHHHHHHHHHHHh---------cCCeEEEEeCcchhhccccccccCccch
Confidence 000 0011111223333443332 246799999999883 2
Q ss_pred HHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HH
Q 025758 145 EAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-AT 215 (248)
Q Consensus 145 ~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~~ 215 (248)
..+..+..+++.. .....+|.++|.+..+.+++.+ |+ ..+.|++|+.++..+++...+.+.++..+.+. ..
T Consensus 125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~ 204 (262)
T 2qz4_A 125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQ 204 (262)
T ss_dssp --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHH
T ss_pred hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHH
Confidence 3334444554432 2346788888888888899988 88 68999999999999999999998888777664 47
Q ss_pred HHHHHccc-cHHHHHHHHHHHhhhcc
Q 025758 216 RLAEKSNR-SLRRAILSFETCRVQQL 240 (248)
Q Consensus 216 ~l~~~~~g-~~r~~~~~l~~~~~~~~ 240 (248)
.++..+.| +.+.+.++++.+...+.
T Consensus 205 ~l~~~~~g~~~~~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 205 RLAELTPGFSGADIANICNEAALHAA 230 (262)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHTC--
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 78877765 35677777776665443
No 39
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=9.5e-21 Score=155.69 Aligned_cols=198 Identities=19% Similarity=0.289 Sum_probs=133.1
Q ss_pred cccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
++...+.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++|..+..+ .+.+.+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~---~~~v~~ 84 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT---FIRVVG 84 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE---EEEEEG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeh
Confidence 3556778999999999999999887743 233459999999999999999999865211 111111
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC--------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------- 142 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-------- 142 (248)
. .+.....+ .........+..... ..+.|++|||+|.+
T Consensus 85 ~------------------------~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~ 130 (285)
T 3h4m_A 85 S------------------------ELVKKFIG-EGASLVKDIFKLAKE---------KAPSIIFIDEIDAIAAKRTDAL 130 (285)
T ss_dssp G------------------------GGCCCSTT-HHHHHHHHHHHHHHH---------TCSEEEEEETTHHHHBCCSSSC
T ss_pred H------------------------HHHHhccc-hHHHHHHHHHHHHHH---------cCCeEEEEECHHHhcccCcccc
Confidence 0 00000111 111123333333332 24679999999876
Q ss_pred ---CHHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 143 ---SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 143 ---~~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
+...+..+..+++.. ..+..+|++||.+..+.+++.+ |+ ..+.|++|+.++..+++...+...++.. +
T Consensus 131 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~ 209 (285)
T 3h4m_A 131 TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE-D 209 (285)
T ss_dssp CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT-T
T ss_pred CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC-c
Confidence 456677777777653 2346788889998899999998 77 5899999999999999998877655442 3
Q ss_pred HHHHHHHHHccc-cHHHHHHHHHHHhhhc
Q 025758 212 GFATRLAEKSNR-SLRRAILSFETCRVQQ 239 (248)
Q Consensus 212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~~~ 239 (248)
..+..++..+.| +.|.+.++++.+...+
T Consensus 210 ~~~~~l~~~~~g~~~~~i~~l~~~a~~~a 238 (285)
T 3h4m_A 210 VNLEEIAKMTEGCVGAELKAICTEAGMNA 238 (285)
T ss_dssp CCHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 346777777765 5666666665555433
No 40
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=6.8e-20 Score=155.92 Aligned_cols=197 Identities=18% Similarity=0.250 Sum_probs=131.6
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhh-----------cC-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
-+++-...+|+|+.|.+++++.|...+. -| +. .++||+||||||||.+|+++|+++..+ -+.++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~ 248 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIV 248 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEE
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEE
Confidence 3556667899999999999999987663 12 22 349999999999999999999987321 11111
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (248)
+. .+.....+ .....++..+..... ..|.||+|||+|.+..
T Consensus 249 ~s------------------------~l~sk~vG-esek~ir~lF~~Ar~---------~aP~IIfiDEiDai~~~R~~~ 294 (437)
T 4b4t_I 249 GS------------------------ELIQKYLG-DGPRLCRQIFKVAGE---------NAPSIVFIDEIDAIGTKRYDS 294 (437)
T ss_dssp SG------------------------GGCCSSSS-HHHHHHHHHHHHHHH---------TCSEEEEEEEESSSSCCCSCS
T ss_pred HH------------------------HhhhccCc-hHHHHHHHHHHHHHh---------cCCcEEEEehhhhhcccCCCC
Confidence 10 00011111 112234555554443 2567999999997731
Q ss_pred ------HHH---HHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758 145 ------EAQ---HSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (248)
Q Consensus 145 ------~~~---~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 210 (248)
... +.|+..++.. ..++.+|.+||+++.+.+++++ |+ ..|.|+.|+.++..+|+..++.+..+.
T Consensus 295 ~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-- 372 (437)
T 4b4t_I 295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-- 372 (437)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC--
T ss_pred CCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC--
Confidence 223 3445555543 2346789999999999999987 77 689999999999999998877654443
Q ss_pred HH-HHHHHHHHccc-cHHHHHHHHHHHhhh
Q 025758 211 SG-FATRLAEKSNR-SLRRAILSFETCRVQ 238 (248)
Q Consensus 211 ~~-~~~~l~~~~~g-~~r~~~~~l~~~~~~ 238 (248)
++ .++.|+..+.| +.+++-++++.+...
T Consensus 373 ~dvdl~~LA~~T~GfSGADI~~l~~eA~~~ 402 (437)
T 4b4t_I 373 EDVNLETLVTTKDDLSGADIQAMCTEAGLL 402 (437)
T ss_dssp SCCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 32 37888888765 566666666665543
No 41
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.85 E-value=1.3e-20 Score=160.96 Aligned_cols=217 Identities=14% Similarity=0.114 Sum_probs=140.7
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhh----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCC--------Ccccceec
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--------GAEKVKVE 69 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~--------~~~~~~~~ 69 (248)
.|..+|+| ++++|++..++.+..++. .+...+++|+||+|+|||++|+.++..+... ....+.++
T Consensus 12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 47788888 889999998887776654 3334469999999999999999999976332 11111111
Q ss_pred ccceeeccCCcc-cccceeeeccccee-eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH-
Q 025758 70 NKTWKIDAGSRN-IDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA- 146 (248)
Q Consensus 70 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~- 146 (248)
+.. .. ..... .......+ +......+............ ... ...+ +++|||++.+....
T Consensus 89 ~~~-------~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~-~l~--------~~~~-vlilDEi~~l~~~~~ 150 (384)
T 2qby_B 89 CRE-------VGGTPQAV-LSSLAGKLTGFSVPKHGINLGEYIDKIKN-GTR--------NIRA-IIYLDEVDTLVKRRG 150 (384)
T ss_dssp HHH-------HCSCHHHH-HHHHHHHHHCSCCCSSSSCTHHHHHHHHH-HHS--------SSCE-EEEEETTHHHHHSTT
T ss_pred Ccc-------CCCCHHHH-HHHHHHHhcCCCCCCCCCCHHHHHHHHHH-Hhc--------cCCC-EEEEECHHHhccCCC
Confidence 100 00 00000 00000000 11111111111111222222 111 1133 99999998876542
Q ss_pred HHH-HHHHHHHhcCCeeEEEEecCC---CcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Q 025758 147 QHS-LRRTMEKYSASCRLILCCNSS---SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE 219 (248)
Q Consensus 147 ~~~-ll~~le~~~~~~~~Il~t~~~---~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~--~~~~~~~~~~~~l~~ 219 (248)
++. +..+++.. .+..+|++++.. ..+.+.+.+|+ ..+.|++++.+++..++..++.. .+..+++++++.+++
T Consensus 151 ~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 151 GDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA 229 (384)
T ss_dssp SHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH
T ss_pred CceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH
Confidence 455 55555544 567899999887 57889999995 79999999999999999998875 456788999999999
Q ss_pred Hcc---ccHHHHHHHHHHHhhhcc
Q 025758 220 KSN---RSLRRAILSFETCRVQQL 240 (248)
Q Consensus 220 ~~~---g~~r~~~~~l~~~~~~~~ 240 (248)
.+. ||+|.++++++.+...+.
T Consensus 230 ~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 230 ISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHhccCCHHHHHHHHHHHHHHhc
Confidence 998 999999999998876543
No 42
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.2e-19 Score=152.42 Aligned_cols=196 Identities=17% Similarity=0.258 Sum_probs=129.2
Q ss_pred cccCCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
++.-...+|+|+.|.+++++.|+..+. -| +.+ ++||+||||||||++|+++|+++..+ -+.+.+
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~ 276 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIG 276 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEh
Confidence 444455899999999999999988653 12 233 49999999999999999999987321 111111
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------ 144 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------ 144 (248)
. .+.....| .....+++.+..... ..|.||+|||+|.+..
T Consensus 277 s------------------------~L~sk~vG-esek~ir~lF~~Ar~---------~aP~IIfiDEiDai~~~R~~~~ 322 (467)
T 4b4t_H 277 S------------------------ELVQKYVG-EGARMVRELFEMART---------KKACIIFFDEIDAVGGARFDDG 322 (467)
T ss_dssp G------------------------GGCCCSSS-HHHHHHHHHHHHHHH---------TCSEEEEEECCTTTSBCCSSSS
T ss_pred H------------------------HhhcccCC-HHHHHHHHHHHHHHh---------cCCceEeecccccccccccCcC
Confidence 0 00111111 112234555554443 2567999999997731
Q ss_pred -----HHH---HHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 145 -----EAQ---HSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 145 -----~~~---~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
... +.++..++.. ..++.+|.+||++..+.++++. |+ ..|.|+.|+.+++.+|++.++.+..+.- +
T Consensus 323 ~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-d 401 (467)
T 4b4t_H 323 AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-G 401 (467)
T ss_dssp CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-S
T ss_pred CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-C
Confidence 223 3344444433 2345788899999999999987 88 6899999999999999988776544331 1
Q ss_pred HHHHHHHHHccc-cHHHHHHHHHHHhh
Q 025758 212 GFATRLAEKSNR-SLRRAILSFETCRV 237 (248)
Q Consensus 212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~ 237 (248)
-.++.|++.+.| +.+++-++++.+..
T Consensus 402 vdl~~LA~~T~GfSGADI~~l~~eAa~ 428 (467)
T 4b4t_H 402 IRWELISRLCPNSTGAELRSVCTEAGM 428 (467)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 237788888765 45666666655543
No 43
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.5e-19 Score=153.98 Aligned_cols=196 Identities=19% Similarity=0.262 Sum_probs=129.6
Q ss_pred cccCCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
+++=.+.+|+|+.|.+++++.|...+. -| +.| ++||+||||||||++|+++|+++..+ -+.+.+
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~ 248 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAA 248 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEeh
Confidence 344467899999999999999987652 12 233 49999999999999999999987321 111111
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------- 143 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------- 143 (248)
. .+.....| .....++..+..... ..|.||+|||+|.+.
T Consensus 249 s------------------------~l~~~~vG-ese~~ir~lF~~A~~---------~aP~IifiDEiDal~~~R~~~~ 294 (434)
T 4b4t_M 249 P------------------------QLVQMYIG-EGAKLVRDAFALAKE---------KAPTIIFIDELDAIGTKRFDSE 294 (434)
T ss_dssp G------------------------GGCSSCSS-HHHHHHHHHHHHHHH---------HCSEEEEEECTHHHHCCCSSGG
T ss_pred h------------------------hhhhcccc-hHHHHHHHHHHHHHh---------cCCeEEeecchhhhhhccCCCC
Confidence 0 00111111 112234555554443 256799999998651
Q ss_pred ----HHH---HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 144 ----REA---QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 144 ----~~~---~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
... .+.|+..++.... ++.+|.+||++..+.+++.+ |+ ..|.|+.|+.++..++++..+.+..+.- +
T Consensus 295 ~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-d 373 (434)
T 4b4t_M 295 KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-D 373 (434)
T ss_dssp GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-C
T ss_pred CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-c
Confidence 122 2345555554432 35688899999999999977 77 6899999999999999998887654431 1
Q ss_pred HHHHHHHHHccc-cHHHHHHHHHHHhh
Q 025758 212 GFATRLAEKSNR-SLRRAILSFETCRV 237 (248)
Q Consensus 212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~ 237 (248)
-.++.|++.+.| +.+++-++++.+..
T Consensus 374 vdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 374 INWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp CCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 227888888765 56666666665543
No 44
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.83 E-value=5.8e-20 Score=156.63 Aligned_cols=218 Identities=15% Similarity=0.215 Sum_probs=140.4
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhhc----CCCCeeEEECCCCCCHHHHHHHHHHHHcCC---Ccccceecccceee
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP---GAEKVKVENKTWKI 75 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~~~~~ill~Gp~G~GKTtla~~ia~~l~~~---~~~~~~~~~~~~~~ 75 (248)
|..+|.| ++++|++...+.+..++.. +....++|+||+|+||||+++.+++.+... ....+.+++....
T Consensus 13 l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~- 88 (386)
T 2qby_A 13 LLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID- 88 (386)
T ss_dssp GSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-
T ss_pred CCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-
Confidence 5567887 7889999999999888763 334459999999999999999999976432 1122222221100
Q ss_pred ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----HHHHHHHH
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLR 151 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----~~~~~~ll 151 (248)
..... .......++......+.............+.. .+.+.+++|||++.+. ......++
T Consensus 89 ------~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDE~~~l~~~~~~~~l~~l~ 153 (386)
T 2qby_A 89 ------TPYRV-LADLLESLDVKVPFTGLSIAELYRRLVKAVRD--------YGSQVVIVLDEIDAFVKKYNDDILYKLS 153 (386)
T ss_dssp ------SHHHH-HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT--------CCSCEEEEEETHHHHHHSSCSTHHHHHH
T ss_pred ------CHHHH-HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc--------cCCeEEEEEcChhhhhccCcCHHHHHHh
Confidence 00000 00000111111111111111112222222222 2247899999998764 34455555
Q ss_pred HHHHHh-cCCeeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcc-
Q 025758 152 RTMEKY-SASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKSN- 222 (248)
Q Consensus 152 ~~le~~-~~~~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~~~- 222 (248)
+.++.. ..+..+|+++++.. .+.+.+.+|+ ..+.|++++.+++..++...+... ...+++++++.+++.+.
T Consensus 154 ~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 154 RINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp HHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred hchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 655532 33467888888773 5778899999 689999999999999999988653 35788999999999988
Q ss_pred --ccHHHHHHHHHHHhhhc
Q 025758 223 --RSLRRAILSFETCRVQQ 239 (248)
Q Consensus 223 --g~~r~~~~~l~~~~~~~ 239 (248)
|++|.++++++.+...+
T Consensus 234 ~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHH
Confidence 99999999998877543
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.83 E-value=2.9e-20 Score=156.99 Aligned_cols=232 Identities=15% Similarity=0.116 Sum_probs=134.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC---cccceecccceeeccCCcc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG---AEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~---~~~~~~~~~~~~~~~~~~~ 81 (248)
..-+|.+|++++|++.+++.+......+...+++|+||+|||||++|++++..+.... ...+ ++.... .+..+.
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~--~~~~~~-~~~~~~ 92 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV--SSPNVE-MIPDWA 92 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT--CCSSGG-GSCTTC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccc--cccccc-cccchh
Confidence 3446789999999999888766555444445699999999999999999998653200 0000 000000 000000
Q ss_pred cccceeeec-ccceeeeCCCCc--CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758 82 IDLELTTLS-SANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~ 158 (248)
.++...... ....+....... ...........+..-.............+.+++|||++.+++..++.|++.+++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~ 172 (350)
T 1g8p_A 93 TVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE 172 (350)
T ss_dssp CCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred hhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCc
Confidence 000000000 001111111000 00000000111111000000000001236799999999999999999999999731
Q ss_pred -------------CCeeEEEEecCCC-cccHHHhhhhh-eeeecCCC-HHHHHHHHHHH---------------------
Q 025758 159 -------------ASCRLILCCNSSS-KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFI--------------------- 201 (248)
Q Consensus 159 -------------~~~~~Il~t~~~~-~~~~~l~sR~~-~i~~~~~~-~~~~~~il~~~--------------------- 201 (248)
....+|.++|... .+.+++.+||. .+.+++|+ .++..+++..+
T Consensus 173 ~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 252 (350)
T 1g8p_A 173 NVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDI 252 (350)
T ss_dssp EEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHH
Confidence 2345666677544 78999999995 49999994 55555666542
Q ss_pred --------HHHcCCCCCHHHHHHHHHHccc----cHHHHHHHHHHHhhhc
Q 025758 202 --------AKKEGLQLPSGFATRLAEKSNR----SLRRAILSFETCRVQQ 239 (248)
Q Consensus 202 --------~~~~~~~~~~~~~~~l~~~~~g----~~r~~~~~l~~~~~~~ 239 (248)
....++.++++++++|++.+.+ ++|.++++++.+...+
T Consensus 253 ~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A 302 (350)
T 1g8p_A 253 RNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALA 302 (350)
T ss_dssp HHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 1224668999999999999877 8999999998776544
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.83 E-value=3e-20 Score=162.76 Aligned_cols=198 Identities=16% Similarity=0.259 Sum_probs=137.9
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.|+++|+|.++++++|++..++.+...+..+..++++|+||||||||++|+.+|..+.+...... +.+..+
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~-l~~~~~-------- 239 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI-LRDKRV-------- 239 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT-TSSCCE--------
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcCCeE--------
Confidence 58999999999999999999999999998777778999999999999999999998754321100 000000
Q ss_pred cccceeeecccceeeeCCC--CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 82 IDLELTTLSSANHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
+.+... ..+.. .......+..+.. ..+.|++|| ...++++.|+..+++ .
T Consensus 240 -------------~~l~~~~~~~g~~-e~~~~~~~~~~~~---------~~~~iLfiD----~~~~a~~~L~~~L~~--g 290 (468)
T 3pxg_A 240 -------------MTLDMGTKYRGEF-EDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLAR--G 290 (468)
T ss_dssp -------------ECC-----------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTTS--S
T ss_pred -------------EEeeCCccccchH-HHHHHHHHHHHHh---------cCCeEEEEe----CchhHHHHHHHhhcC--C
Confidence 111111 00000 0113344544443 245699999 344567777777763 3
Q ss_pred CeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcccc------
Q 025758 160 SCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS------ 224 (248)
Q Consensus 160 ~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g~------ 224 (248)
...+|.+||... .+.+++.+||..+.|++|+.+++..++...+.+ .++.++++++..++..+.+.
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~l 370 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL 370 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcC
Confidence 567888888776 588999999999999999999999999988766 67889999999999876543
Q ss_pred HHHHHHHHHHHhh
Q 025758 225 LRRAILSFETCRV 237 (248)
Q Consensus 225 ~r~~~~~l~~~~~ 237 (248)
++.++++++.++.
T Consensus 371 p~~ai~ll~~a~~ 383 (468)
T 3pxg_A 371 PDKAIDLIDEAGS 383 (468)
T ss_dssp THHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5578888877764
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.3e-19 Score=150.83 Aligned_cols=193 Identities=16% Similarity=0.208 Sum_probs=128.6
Q ss_pred CCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 7 YRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
-...+|+|+.|.+.+++.|...+. -| +.| ++||+||||||||++|+++|+++..+- +.+.+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~s-- 249 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPAS-- 249 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGG--
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehh--
Confidence 346789999999999999887763 12 233 499999999999999999999873211 111110
Q ss_pred eeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH---------
Q 025758 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------- 144 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------- 144 (248)
. +.....+ .....++..+..... ..|.||||||+|.+..
T Consensus 250 -------------------~---l~sk~~G-ese~~ir~~F~~A~~---------~~P~IifiDEiDai~~~R~~~~~~~ 297 (437)
T 4b4t_L 250 -------------------G---IVDKYIG-ESARIIREMFAYAKE---------HEPCIIFMDEVDAIGGRRFSEGTSA 297 (437)
T ss_dssp -------------------G---TCCSSSS-HHHHHHHHHHHHHHH---------SCSEEEEEECCCSSSCCCSSSCCSS
T ss_pred -------------------h---hccccch-HHHHHHHHHHHHHHh---------cCCceeeeecccccccccccCCCCc
Confidence 0 0000111 112234444444332 3578999999997731
Q ss_pred --H---HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758 145 --E---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA 214 (248)
Q Consensus 145 --~---~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 214 (248)
. ..+.|+..++... .++.+|.+||++..+.++++++ + ..|.|+.|+.++...|++.++.+..+. ++-.+
T Consensus 298 ~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl 376 (437)
T 4b4t_L 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDF 376 (437)
T ss_dssp TTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCH
T ss_pred chHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCH
Confidence 1 2345666666443 3467899999999999999876 4 589999999999999999887765443 12237
Q ss_pred HHHHHHccc-cHHHHHHHHHHHhh
Q 025758 215 TRLAEKSNR-SLRRAILSFETCRV 237 (248)
Q Consensus 215 ~~l~~~~~g-~~r~~~~~l~~~~~ 237 (248)
+.+++.+.| +.+++-+++..+..
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 377 EAAVKMSDGFNGADIRNCATEAGF 400 (437)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHH
Confidence 888888765 56666666665543
No 48
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=3.9e-20 Score=164.71 Aligned_cols=198 Identities=17% Similarity=0.226 Sum_probs=126.6
Q ss_pred cccccccHHHHHHHHHHhh------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758 12 LDQVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (248)
.++++|++.+++.+...+. ..+.++++|+|||||||||+|+++++.+ .+..+.+...+.... ..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~~~~~---------~~ 149 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGGVRDE---------SE 149 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC---------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecccchh---------hh
Confidence 3457899999888765542 2234469999999999999999999965 333333322221000 00
Q ss_pred eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH----HHHHHHHHHHhc---
Q 025758 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKYS--- 158 (248)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~ll~~le~~~--- 158 (248)
. ......+++..+ ......+... .....+++|||++.+.+.. ++.|++.++...
T Consensus 150 ~-~g~~~~~ig~~~-----------~~~~~~~~~a-------~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~ 210 (543)
T 3m6a_A 150 I-RGHRRTYVGAMP-----------GRIIQGMKKA-------GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSS 210 (543)
T ss_dssp --------------------------CHHHHHHTT-------CSSSEEEEEEESSSCC---------CCGGGTCTTTTTB
T ss_pred h-hhHHHHHhccCc-----------hHHHHHHHHh-------hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcce
Confidence 0 000000011110 0111112211 1133499999999998763 478888886432
Q ss_pred ------------CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHH
Q 025758 159 ------------ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----------EGLQLPSGFATR 216 (248)
Q Consensus 159 ------------~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----------~~~~~~~~~~~~ 216 (248)
.+..||+++|.+..+.+++++||.++.|++|+.++...++...+.. .++.++++++..
T Consensus 211 ~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~ 290 (543)
T 3m6a_A 211 FSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILD 290 (543)
T ss_dssp CCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHH
T ss_pred eecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHH
Confidence 3457899999999999999999999999999999999999887632 245678999999
Q ss_pred HHHHcc--ccHHHHHHHHHHHhhh
Q 025758 217 LAEKSN--RSLRRAILSFETCRVQ 238 (248)
Q Consensus 217 l~~~~~--g~~r~~~~~l~~~~~~ 238 (248)
+++.+. +++|.+.+.++.++..
T Consensus 291 l~~~~~~~~~vR~L~~~i~~~~~~ 314 (543)
T 3m6a_A 291 IIRYYTREAGVRSLERQLAAICRK 314 (543)
T ss_dssp HHHHHCCCSSSHHHHHHHHHHHHH
T ss_pred HHHhCChhhchhHHHHHHHHHHHH
Confidence 987664 6888888888776643
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=8.9e-19 Score=150.40 Aligned_cols=195 Identities=19% Similarity=0.273 Sum_probs=130.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
++-...+|+|+.|.+.+++.|...+. -| ..+ ++||+||||||||++|+++|+++..+ -+.+++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~---~~~v~~~ 240 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA---FIRVNGS 240 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEecc
Confidence 34445799999999999999887663 12 223 49999999999999999999987321 1111110
Q ss_pred ceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (248)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (248)
. +.....| .....+++.+..... ..|.|++|||+|.+.
T Consensus 241 ---------------------~---l~~~~~G-e~e~~ir~lF~~A~~---------~aP~IifiDEiD~i~~~R~~~~~ 286 (428)
T 4b4t_K 241 ---------------------E---FVHKYLG-EGPRMVRDVFRLARE---------NAPSIIFIDEVDSIATKRFDAQT 286 (428)
T ss_dssp ---------------------G---TCCSSCS-HHHHHHHHHHHHHHH---------TCSEEEEEECTHHHHCSCSSSCS
T ss_pred ---------------------h---hhccccc-hhHHHHHHHHHHHHH---------cCCCeeechhhhhhhccccCCCC
Confidence 0 0001111 122235555554443 256799999998541
Q ss_pred ---H---HHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeec-CCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 144 ---R---EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRIN-SPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 144 ---~---~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~-~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
. ...+.|+..++... .++.+|.+||++..+.+++++ |+ ..|.|+ .|+.++...++..++.+.++.- +
T Consensus 287 ~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~-~ 365 (428)
T 4b4t_K 287 GSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAP-E 365 (428)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCT-T
T ss_pred CCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCc-c
Confidence 1 23456677777543 346789999999999999987 66 579996 7999999999988876654431 2
Q ss_pred HHHHHHHHHccc-cHHHHHHHHHHHhh
Q 025758 212 GFATRLAEKSNR-SLRRAILSFETCRV 237 (248)
Q Consensus 212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~ 237 (248)
-.++.++..+.| +.+++-++++.+..
T Consensus 366 ~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 366 ADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp CCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 237888888765 56666666666554
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.82 E-value=1.4e-20 Score=158.06 Aligned_cols=202 Identities=14% Similarity=0.135 Sum_probs=136.6
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.|+++|+|..+++++|++.+++.+...+..+ .+++|+||||+|||++|++++..+.++ ...+.+. +...
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~~---~~~i~~~------~~~~ 84 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDLD---FHRIQFT------PDLL 84 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTCC---EEEEECC------TTCC
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCCC---eEEEecC------CCCC
Confidence 4899999999999999999999998887764 379999999999999999999965321 1111110 0000
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--- 158 (248)
. .++ .....+.... +.. ...+ +.-...+++|||++.+++..++.|++.+++..
T Consensus 85 ~-~~l-----~g~~~~~~~~-~~~-------------~~~~----g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 85 P-SDL-----IGTMIYNQHK-GNF-------------EVKK----GPVFSNFILADEVNRSPAKVQSALLECMQEKQVTI 140 (331)
T ss_dssp H-HHH-----HEEEEEETTT-TEE-------------EEEE----CTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred h-hhc-----CCceeecCCC-Cce-------------Eecc----CcccccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence 0 000 0000000000 000 0000 00013599999999999999999999999742
Q ss_pred --------CCeeEEEEecCCC-----cccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHH--------------------
Q 025758 159 --------ASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK-------------------- 204 (248)
Q Consensus 159 --------~~~~~Il~t~~~~-----~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~-------------------- 204 (248)
....+|.++|... .+.+++.+||. .+.+++|+.++..+++...+..
T Consensus 141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN 220 (331)
T ss_dssp TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence 2233444444222 28899999996 5999999999999999987654
Q ss_pred --cCCCCCHHHHHHHHHHc-----cc---------------cHHHHHHHHHHHhhh
Q 025758 205 --EGLQLPSGFATRLAEKS-----NR---------------SLRRAILSFETCRVQ 238 (248)
Q Consensus 205 --~~~~~~~~~~~~l~~~~-----~g---------------~~r~~~~~l~~~~~~ 238 (248)
.++.+++++++++++.+ .+ ++|.++++++.+...
T Consensus 221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~ 276 (331)
T 2r44_A 221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAM 276 (331)
T ss_dssp HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHH
Confidence 26778999999998654 22 699999888776543
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.82 E-value=6e-19 Score=153.75 Aligned_cols=198 Identities=18% Similarity=0.271 Sum_probs=133.0
Q ss_pred cccc-CCCCCcccccccHHHHHHHHHHhhc-----------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758 3 WVDK-YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE 69 (248)
Q Consensus 3 ~~~k-y~p~~~~~lig~~~~~~~l~~~~~~-----------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~ 69 (248)
|.+. ..+.+|+|++|++++++.+...+.. .+.+ +++|+||||||||++|+++++.+..+ .+.++
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~---f~~is 81 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP---FFHIS 81 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---eeeCC
Confidence 4455 5566999999999998888776531 2233 49999999999999999999976321 11111
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (248)
+. ..... ..+ ......+..+..... ..|.||||||+|.+..
T Consensus 82 ~~---------------------~~~~~---~~g-~~~~~~r~lf~~A~~---------~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 82 GS---------------------DFVEL---FVG-VGAARVRDLFAQAKA---------HAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp GG---------------------GTTTC---CTT-HHHHHHHHHHHHHHH---------TCSEEEEEETGGGTCCC----
T ss_pred HH---------------------HHHHH---Hhc-ccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhhcccc
Confidence 11 00100 011 112234444444332 2578999999988742
Q ss_pred ---------HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758 145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP 210 (248)
Q Consensus 145 ---------~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 210 (248)
...+.|+..++.. ..+..+|.+||.+..+.+++.+ |+ ..+.++.|+.++..++++..+.+..+ +
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~ 205 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--A 205 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--C
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--c
Confidence 2345666666643 3346788888988888888876 77 48999999999999999877765443 3
Q ss_pred HHH-HHHHHHHccccH-HHHHHHHHHHhhhc
Q 025758 211 SGF-ATRLAEKSNRSL-RRAILSFETCRVQQ 239 (248)
Q Consensus 211 ~~~-~~~l~~~~~g~~-r~~~~~l~~~~~~~ 239 (248)
+++ +..++..+.|+. |++.++++.+...+
T Consensus 206 ~~v~l~~la~~t~G~sgadL~~lv~~Aal~A 236 (476)
T 2ce7_A 206 EDVNLEIIAKRTPGFVGADLENLVNEAALLA 236 (476)
T ss_dssp TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 333 788899998875 88888888776544
No 52
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.82 E-value=2.9e-20 Score=143.26 Aligned_cols=171 Identities=14% Similarity=0.253 Sum_probs=113.0
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.|+++|+|.+|++++|++..++.+..++..+...+++|+||+|+|||++|+.++..+.+...... ..+..+.
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~~~~~~------- 82 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG-LKGRRVL------- 82 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG-GTTCEEE-------
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh-hcCCcEE-------
Confidence 58899999999999999999999999988776677999999999999999999998754221100 0000000
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------HHHHHHHH
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------AQHSLRRT 153 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------~~~~ll~~ 153 (248)
....... ...............+.+..+.. ...+.+++|||++.+... ..+.+..+
T Consensus 83 ------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~ 146 (195)
T 1jbk_A 83 ------ALDMGAL--VAGAKYRGEFEERLKGVLNDLAK--------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA 146 (195)
T ss_dssp ------EECHHHH--HTTTCSHHHHHHHHHHHHHHHHH--------STTTEEEEEETGGGGTT------CCCCHHHHHHH
T ss_pred ------EeeHHHH--hccCCccccHHHHHHHHHHHHhh--------cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh
Confidence 0000000 00000000011123333443332 235679999999988532 25566666
Q ss_pred HHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHH
Q 025758 154 MEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL 198 (248)
Q Consensus 154 le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il 198 (248)
++. .+..+|++++... .+.+++.+||..+.|++|+.+++.+++
T Consensus 147 ~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 147 LAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 653 3567888888765 578999999999999999999987764
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.81 E-value=4.7e-19 Score=146.82 Aligned_cols=195 Identities=22% Similarity=0.242 Sum_probs=129.1
Q ss_pred cccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
+.++.+.+|++++|++.+++.|..++.. ....+++|+||||||||++|+++|+.+. .+.+.+++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~ 82 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG 82 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEh
Confidence 4567889999999999999999887742 2233499999999999999999999652 12222222
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-----
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----- 145 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----- 145 (248)
..+. . .+. +. ....+...+..... ..+.+++|||+|.+...
T Consensus 83 ~~l~---------------~-----~~~----g~-~~~~~~~~f~~a~~---------~~p~il~iDEid~l~~~~~~~~ 128 (301)
T 3cf0_A 83 PELL---------------T-----MWF----GE-SEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNI 128 (301)
T ss_dssp HHHH---------------H-----HHH----TT-CTTHHHHHHHHHHH---------TCSEEEEECSTTHHHHHHTTTT
T ss_pred HHHH---------------h-----hhc----Cc-hHHHHHHHHHHHHh---------cCCeEEEEEChHHHhhccCCCc
Confidence 1100 0 000 00 01123344443332 24679999999976543
Q ss_pred ---------HHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 146 ---------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 146 ---------~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
..+.|+..++.. ..+..+|.+||.+..+.+++.+ |+ ..+.|+.|+.++..+++...+.+.++. .+
T Consensus 129 ~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~ 207 (301)
T 3cf0_A 129 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KD 207 (301)
T ss_dssp CCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SS
T ss_pred CCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-cc
Confidence 357788888754 3456788899999889999988 88 589999999999999999888776543 12
Q ss_pred HHHHHHHHHccc-cHHHHHHHHHHHh
Q 025758 212 GFATRLAEKSNR-SLRRAILSFETCR 236 (248)
Q Consensus 212 ~~~~~l~~~~~g-~~r~~~~~l~~~~ 236 (248)
..++.++..+.| +.+++.++++.++
T Consensus 208 ~~~~~la~~~~g~sg~dl~~l~~~a~ 233 (301)
T 3cf0_A 208 VDLEFLAKMTNGFSGADLTEICQRAC 233 (301)
T ss_dssp CCHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 225566655533 3345555554444
No 54
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.80 E-value=4e-18 Score=138.62 Aligned_cols=205 Identities=15% Similarity=0.133 Sum_probs=121.4
Q ss_pred CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758 10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
.+|++++|+....+.+...+.. ....+++|+||+|||||++|++++..+.......+.+++..+. . .
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~-------~--~-- 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-------E--N-- 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC-------H--H--
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC-------h--h--
Confidence 3789999998887776655432 2234599999999999999999998543222122222211000 0 0
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh----------
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------- 157 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~---------- 157 (248)
... ....+.. .+. +......... ........+++|||++.++...+..|++++++.
T Consensus 72 ~~~-~~l~g~~---~~~---------~~g~~~~~~~-~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLD-SELFGHE---AGA---------FTGAQKRHPG-RFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHH-HHHHCCC---------------------CCCC-HHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHH-HHhcCCc---ccc---------cccccccccc-hhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCccc
Confidence 000 0000000 000 0000000000 000113469999999999999999999999864
Q ss_pred -cCCeeEEEEecCCC-------cccHHHhhhhh--eeeecCCCH--HHHHHHHHHHH----HHcCC----CCCHHHHHHH
Q 025758 158 -SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIA----KKEGL----QLPSGFATRL 217 (248)
Q Consensus 158 -~~~~~~Il~t~~~~-------~~~~~l~sR~~--~i~~~~~~~--~~~~~il~~~~----~~~~~----~~~~~~~~~l 217 (248)
..+..+|++||... .+.+++.+|+. .+.++++.. +++..++...+ .+.+. .+++++++.+
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L 217 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL 217 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence 23567888888752 35689999984 577888775 56665544443 33444 6889999999
Q ss_pred HHHc-cccHHHHHHHHHHHhhhc
Q 025758 218 AEKS-NRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 218 ~~~~-~g~~r~~~~~l~~~~~~~ 239 (248)
.... .||+|++.+.++.++..+
T Consensus 218 ~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 218 LNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHhC
Confidence 8775 899999999999987544
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.80 E-value=1.3e-18 Score=161.06 Aligned_cols=197 Identities=18% Similarity=0.224 Sum_probs=133.4
Q ss_pred cccccHHHHHHHHHHhhc--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758 14 QVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL 84 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (248)
+++|++.+++.+...+.. ++.. +++|+||+|||||++|++++..+. ...+.+++..+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~---~~~~~i~~s~~~~~-------- 527 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEYMER-------- 527 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGCSSS--------
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCEEEEechhhcch--------
Confidence 478999998887776642 1222 599999999999999999999762 22333333222100
Q ss_pred ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 025758 85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ 158 (248)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------ 158 (248)
......++..+ +.............+.. ..+.|++|||++.+++..++.|++++++..
T Consensus 528 ----~~~~~l~g~~~---g~~g~~~~~~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g 591 (758)
T 1r6b_X 528 ----HTVSRLIGAPP---GYVGFDQGGLLTDAVIK---------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNG 591 (758)
T ss_dssp ----SCCSSSCCCCS---CSHHHHHTTHHHHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTT
T ss_pred ----hhHhhhcCCCC---CCcCccccchHHHHHHh---------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCC
Confidence 00111122111 11111111111222221 246799999999999999999999999752
Q ss_pred -----CCeeEEEEecCCC-------------------------cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHc--
Q 025758 159 -----ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE-- 205 (248)
Q Consensus 159 -----~~~~~Il~t~~~~-------------------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~-- 205 (248)
.++.+|++||... .+.+++.+|+ .++.|++++.+++..++...+.+.
T Consensus 592 ~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~ 671 (758)
T 1r6b_X 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV 671 (758)
T ss_dssp EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 3466888888643 5678999999 789999999999999999887632
Q ss_pred -------CCCCCHHHHHHHHHHc---cccHHHHHHHHHHHhh
Q 025758 206 -------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV 237 (248)
Q Consensus 206 -------~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~ 237 (248)
.+.++++++++|++.+ .+++|.+.+.++..+.
T Consensus 672 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 672 QLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 3568899999999876 3448888888777664
No 56
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.80 E-value=1.1e-18 Score=147.28 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=137.1
Q ss_pred HHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcC
Q 025758 25 LKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103 (248)
Q Consensus 25 l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (248)
+.+.++ ++..+ ++|+||+|.||+++++.++..+.+++... + ..+.+.. .
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~--------------------~------~~~~~~~-~-- 58 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE--------------------H------HTFSIDP-N-- 58 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCE--------------------E------EEEECCT-T--
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCe--------------------e------EEEEecC-C--
Confidence 334444 35555 99999999999999999999875432110 0 0122221 1
Q ss_pred cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCC-CCHHHHHHHHHHHHHhcCCeeEEEEecCC------CcccHH
Q 025758 104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSS------SKVTEA 176 (248)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~ll~~le~~~~~~~~Il~t~~~------~~~~~~ 176 (248)
. ..++.++.+.. .|. .++++|++|||++. ++..++++|++++++++.++.+|+++++. ..+.++
T Consensus 59 -~---~~~~l~~~~~~-~pl----f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~ 129 (343)
T 1jr3_D 59 -T---DWNAIFSLCQA-MSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTA 129 (343)
T ss_dssp -C---CHHHHHHHHHH-HHH----CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHH
T ss_pred -C---CHHHHHHHhcC-cCC----ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHH
Confidence 1 13344433322 111 24689999999998 99999999999999999999999998774 468999
Q ss_pred HhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238 (248)
Q Consensus 177 l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 238 (248)
+.|||.++.|.+++..++..++..++.++|+.++++++..+++.++||+|.+.+.|+.+..-
T Consensus 130 i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~ 191 (343)
T 1jr3_D 130 LANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLL 191 (343)
T ss_dssp HTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred HHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988863
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.80 E-value=9e-19 Score=161.96 Aligned_cols=187 Identities=17% Similarity=0.311 Sum_probs=132.9
Q ss_pred ccccccHHHHHHHHHHhhcC--------CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~~--------~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
.+++|++.+++.+...+... +. .+++|+||+|||||++|++++..+.+....-+.+++..+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~--------- 561 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM--------- 561 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC---------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc---------
Confidence 45789999998887776421 12 2599999999999999999999876655444444442221
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh------
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------ 157 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~------ 157 (248)
.......+ .. ...+.. . .+.|++|||++.+++..++.|++++++.
T Consensus 562 ------------~~~~~~~~-----~l---~~~~~~-~--------~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~ 612 (758)
T 3pxi_A 562 ------------EKHSTSGG-----QL---TEKVRR-K--------PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSK 612 (758)
T ss_dssp ------------SSCCCC--------C---HHHHHH-C--------SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC---
T ss_pred ------------cccccccc-----hh---hHHHHh-C--------CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCC
Confidence 00000000 01 111221 1 3459999999999999999999999973
Q ss_pred -----cCCeeEEEEecCCCc------------ccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHc---------CCCCC
Q 025758 158 -----SASCRLILCCNSSSK------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE---------GLQLP 210 (248)
Q Consensus 158 -----~~~~~~Il~t~~~~~------------~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~---------~~~~~ 210 (248)
..++.+|++||.... +.+++.+|+ .++.|++++.+++..++...+... .+.++
T Consensus 613 g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 692 (758)
T 3pxi_A 613 GRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT 692 (758)
T ss_dssp --CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred CCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 245678999986543 788999999 899999999999999998877642 44688
Q ss_pred HHHHHHHHHH---ccccHHHHHHHHHHHhh
Q 025758 211 SGFATRLAEK---SNRSLRRAILSFETCRV 237 (248)
Q Consensus 211 ~~~~~~l~~~---~~g~~r~~~~~l~~~~~ 237 (248)
++++++|++. ..+++|.+.+.++....
T Consensus 693 ~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 693 DAAKAKVAEEGVDLEYGARPLRRAIQKHVE 722 (758)
T ss_dssp HHHHHHHHGGGCCTTTTTTTHHHHHHHHTH
T ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Confidence 9999999876 35788888887776553
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.79 E-value=6.7e-19 Score=164.62 Aligned_cols=205 Identities=19% Similarity=0.286 Sum_probs=137.4
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.|+++|+|.+|++++|++..++.+...+..+..++++|+||||||||++|+.+|+.+.+..... ...+..+
T Consensus 159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~-~l~~~~~-------- 229 (854)
T 1qvr_A 159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE-GLKGKRI-------- 229 (854)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT-TSTTCEE--------
T ss_pred hHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch-hhcCCeE--------
Confidence 4889999999999999999999999998887777899999999999999999999774322100 0001100
Q ss_pred cccceeeecccceeeeCCCCc--Cc----chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------HHHH
Q 025758 82 IDLELTTLSSANHVELSPSDA--GF----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQ 147 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------~~~~ 147 (248)
+.+..... +. .....+...+..+.. ...+.|++|||++.+. ....
T Consensus 230 -------------~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~--------~~~~~iL~IDEi~~l~~~~~~~g~~~~~ 288 (854)
T 1qvr_A 230 -------------VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ--------SQGEVILFIDELHTVVGAGKAEGAVDAG 288 (854)
T ss_dssp -------------EEECC-----------CHHHHHHHHHHHHHT--------TCSSEEEEECCC----------------
T ss_pred -------------EEeehHHhhccCccchHHHHHHHHHHHHHHh--------cCCCeEEEEecHHHHhccCCccchHHHH
Confidence 11111110 00 111223344444433 2256799999999886 3445
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCC----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 025758 148 HSLRRTMEKYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE 219 (248)
Q Consensus 148 ~~ll~~le~~~~~~~~Il~t~~~~----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~ 219 (248)
+.|..+++. ....+|.+++... .+.+++.+||..+.|++|+.++...++...+.+ .++.++++++..++.
T Consensus 289 ~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ 366 (854)
T 1qvr_A 289 NMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT 366 (854)
T ss_dssp ---HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred HHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHH
Confidence 567777764 3456788877654 367899999999999999999999999877664 478889999999988
Q ss_pred Hcccc------HHHHHHHHHHHhhh
Q 025758 220 KSNRS------LRRAILSFETCRVQ 238 (248)
Q Consensus 220 ~~~g~------~r~~~~~l~~~~~~ 238 (248)
.+.|. ++.++++++.++..
T Consensus 367 ls~r~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 367 LSHRYITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp HHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred HHhhhcccccChHHHHHHHHHHHHH
Confidence 77542 77788888777643
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.78 E-value=1e-18 Score=161.54 Aligned_cols=198 Identities=15% Similarity=0.241 Sum_probs=137.7
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.|+++|+|.++++++|++..++.+...+..+..++++|+||||||||++|+.+|..+.+......-.+.. +
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~-------- 239 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-V-------- 239 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-E--------
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-E--------
Confidence 5899999999999999999999999999887778899999999999999999999875432111000000 0
Q ss_pred cccceeeecccceeeeCC--CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758 82 IDLELTTLSSANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~ 159 (248)
+.+.. ...+. ....+...+..+.. ..+.|+||| .....++.|+..++ ..
T Consensus 240 -------------~~~~~g~~~~G~-~e~~l~~~~~~~~~---------~~~~iLfiD----~~~~~~~~L~~~l~--~~ 290 (758)
T 3pxi_A 240 -------------MTLDMGTKYRGE-FEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLA--RG 290 (758)
T ss_dssp -------------ECC-----------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTT--SS
T ss_pred -------------EEecccccccch-HHHHHHHHHHHHHh---------cCCEEEEEc----CchhHHHHHHHHHh--cC
Confidence 01100 00000 01123444554443 245699999 33456777777776 34
Q ss_pred CeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccc------c
Q 025758 160 SCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR------S 224 (248)
Q Consensus 160 ~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g------~ 224 (248)
...+|.+||... .+.+++++||..+.|++|+.+++..++...+.+ .++.++++++..++..+.+ .
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~ 370 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL 370 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcC
Confidence 567888888877 688999999999999999999999999977665 5778999999999877643 3
Q ss_pred HHHHHHHHHHHhh
Q 025758 225 LRRAILSFETCRV 237 (248)
Q Consensus 225 ~r~~~~~l~~~~~ 237 (248)
++.++.+++.++.
T Consensus 371 p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 371 PDKAIDLIDEAGS 383 (758)
T ss_dssp THHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5678888877764
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.78 E-value=8.1e-19 Score=164.08 Aligned_cols=201 Identities=16% Similarity=0.273 Sum_probs=135.2
Q ss_pred ccccccHHHHHHHHHHhhcC--------CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~~--------~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
++++|++.+++.+...+... +. .+++|+||+|||||++|++++..+.+.....+.+++..+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~------- 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK------- 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS-------
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch-------
Confidence 56799999998887776432 12 259999999999999999999988665544444444322100
Q ss_pred cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758 84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----- 158 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----- 158 (248)
......++..+...+... .......+.. . .+.+++|||++.+++..++.|++++++..
T Consensus 631 -----~~~s~l~g~~~~~~G~~~---~g~l~~~~~~-~--------~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~ 693 (854)
T 1qvr_A 631 -----HAVSRLIGAPPGYVGYEE---GGQLTEAVRR-R--------PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH 693 (854)
T ss_dssp -----GGGGGC-----------------CHHHHHHH-C--------SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS
T ss_pred -----hHHHHHcCCCCCCcCccc---cchHHHHHHh-C--------CCeEEEEecccccCHHHHHHHHHHhccCceECCC
Confidence 000001111111111111 1111222222 1 35699999999999999999999999753
Q ss_pred ------CCeeEEEEecCC--------------------------CcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH-
Q 025758 159 ------ASCRLILCCNSS--------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK- 204 (248)
Q Consensus 159 ------~~~~~Il~t~~~--------------------------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~- 204 (248)
.++.+|++||.. ..+.++|.+|+ .++.|.|++.+++..++...+.+
T Consensus 694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 345688888862 13567888999 78899999999999999887663
Q ss_pred ------c--CCCCCHHHHHHHHHHcc---ccHHHHHHHHHHHhh
Q 025758 205 ------E--GLQLPSGFATRLAEKSN---RSLRRAILSFETCRV 237 (248)
Q Consensus 205 ------~--~~~~~~~~~~~l~~~~~---g~~r~~~~~l~~~~~ 237 (248)
. .+.++++++++|++.+. |++|.+.+.++....
T Consensus 774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 1 34689999999998764 899999999887764
No 61
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.78 E-value=1.7e-18 Score=156.17 Aligned_cols=233 Identities=18% Similarity=0.171 Sum_probs=140.6
Q ss_pred cccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758 4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 4 ~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
..+|+|++|++++|++.+++.+...+..+ .+++|+|||||||||+|+++++.+.+...+.+.+.+.......+.....
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 46899999999999999999999999877 3799999999999999999999554433344444433221111100000
Q ss_pred cc------------------------eeeecccce--eee-CCCCcCc----chhHHHHHHHHHHHhcCC---CcCC---
Q 025758 84 LE------------------------LTTLSSANH--VEL-SPSDAGF----QDRYVVQEVIKEMAKNRP---IDTK--- 126 (248)
Q Consensus 84 ~~------------------------~~~~~~~~~--~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~--- 126 (248)
.. +........ +.. .....+. ....+..+.+..+. ..+ ..++
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~-~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVR-HDPFQSGGLGTPA 188 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEEC-CCCC----CCCCG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEE-echhhcCCccccc
Confidence 00 000000000 000 0000000 00111111111110 000 0000
Q ss_pred ---------CCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------------------CCeeEEEEecCC--Cccc
Q 025758 127 ---------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------------------ASCRLILCCNSS--SKVT 174 (248)
Q Consensus 127 ---------~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------------------~~~~~Il~t~~~--~~~~ 174 (248)
...++.+++|||++.|++..++.|+++|++.. .+.++|+++|.. ..+.
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~ 268 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH 268 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred cccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence 01245699999999999999999999998532 234588888876 5799
Q ss_pred HHHhhhhh----eeeecCC---CHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---cc-------cHHHHHHHH
Q 025758 175 EAIRSRCL----NIRINSP---TEEQIVKVLEFIAKKE-----GLQLPSGFATRLAEKS---NR-------SLRRAILSF 232 (248)
Q Consensus 175 ~~l~sR~~----~i~~~~~---~~~~~~~il~~~~~~~-----~~~~~~~~~~~l~~~~---~g-------~~r~~~~~l 232 (248)
++|++||. .+.|+.. ..+.+..++....... ...++++++..|++.+ .| +.|++.+++
T Consensus 269 ~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ll 348 (604)
T 3k1j_A 269 PALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIV 348 (604)
T ss_dssp HHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHH
T ss_pred HHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHH
Confidence 99999994 5565433 3455666665544332 2568899999999765 34 699999999
Q ss_pred HHHhhhc
Q 025758 233 ETCRVQQ 239 (248)
Q Consensus 233 ~~~~~~~ 239 (248)
+.+...+
T Consensus 349 r~A~~~A 355 (604)
T 3k1j_A 349 RAAGDIA 355 (604)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876443
No 62
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.77 E-value=1.2e-19 Score=139.33 Aligned_cols=163 Identities=16% Similarity=0.254 Sum_probs=106.0
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.|.++|+|.+|++++|++..++.+..++..+...+++|+||+|+|||++|+.++..+........ ..+..+.
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~-~~~~~~~------- 82 (187)
T 2p65_A 11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDS-LKGRKLV------- 82 (187)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTT-TTTCEEE-------
T ss_pred HHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcch-hcCCeEE-------
Confidence 58899999999999999999999999988776777999999999999999999997744221100 0000000
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHHHHHHHH
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR 152 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~ll~ 152 (248)
......... .............+.+..+.. ...+.+++|||++.+. ....+.+..
T Consensus 83 ------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~ 146 (187)
T 2p65_A 83 ------SLDLSSLIA--GAKYRGDFEERLKSILKEVQD--------AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKP 146 (187)
T ss_dssp ------EECHHHHHH--HCCSHHHHHHHHHHHHHHHHH--------TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHH
T ss_pred ------EEeHHHhhc--CCCchhHHHHHHHHHHHHHHh--------cCCceEEEEeCHHHhcccccccccchHHHHHHHH
Confidence 000000000 000000011123333443333 2256799999999886 344556666
Q ss_pred HHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCC
Q 025758 153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT 190 (248)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~ 190 (248)
.++. ....+|++++.+. .+.+++++||..+.+++|+
T Consensus 147 ~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 147 MLAR--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 6654 3467888888764 5789999999989998875
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.77 E-value=1.3e-18 Score=160.89 Aligned_cols=209 Identities=14% Similarity=0.205 Sum_probs=138.6
Q ss_pred CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
.|+++|+|.+|++++|++..++.+...+......+++|+||+|||||++|+.++..+.+........+...+.
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~------- 247 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS------- 247 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-------
T ss_pred hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-------
Confidence 5899999999999999999999999998877777799999999999999999999875432111000000000
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHHHHHHHH
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR 152 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~ll~ 152 (248)
......+. .....+ .........++.+. ...+.+++|||++.+. ....+.|..
T Consensus 248 -------~~~~~l~~-~~~~~g-~~e~~l~~~~~~~~---------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~ 309 (758)
T 1r6b_X 248 -------LDIGSLLA-GTKYRG-DFEKRFKALLKQLE---------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP 309 (758)
T ss_dssp -------CCCC---C-CCCCSS-CHHHHHHHHHHHHS---------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS
T ss_pred -------EcHHHHhc-cccccc-hHHHHHHHHHHHHH---------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHH
Confidence 00000000 000111 11112333333332 1246799999999882 223333444
Q ss_pred HHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccc
Q 025758 153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR 223 (248)
Q Consensus 153 ~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g 223 (248)
+++. ....+|.+++.+. ...+++.+||..+.|++|+.+++.+++..++.. .++.++++++..++..+.+
T Consensus 310 ~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~ 387 (758)
T 1r6b_X 310 LLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_dssp CSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence 4332 3456777777542 456789999999999999999999999987765 5788999999999877654
Q ss_pred ------cHHHHHHHHHHHhh
Q 025758 224 ------SLRRAILSFETCRV 237 (248)
Q Consensus 224 ------~~r~~~~~l~~~~~ 237 (248)
.+..++++++.++.
T Consensus 388 ~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 388 YINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp HCTTSCTTHHHHHHHHHHHH
T ss_pred hcccccCchHHHHHHHHHHH
Confidence 24567777776654
No 64
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.77 E-value=2.1e-18 Score=147.18 Aligned_cols=194 Identities=17% Similarity=0.213 Sum_probs=123.2
Q ss_pred cccccHHHHHHHHHHhh----c-------------------------C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCc
Q 025758 14 QVIVHQDIAQNLKKLVT----E-------------------------Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGA 63 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~----~-------------------------~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~ 63 (248)
.++||+.+++.|..++. . . ...+++|+||+|||||++|+++|..+..+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~-- 99 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP-- 99 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC--
Confidence 36899999998887761 0 1 23359999999999999999999966211
Q ss_pred ccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC
Q 025758 64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS 143 (248)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~ 143 (248)
.+.+++..+. . -++. +..........+.. ....+ ....+.+++|||++.+.
T Consensus 100 -~~~~~~~~~~----------------~---~~~~----g~~~~~~~~~~~~~----~~~~~-~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 100 -IAISDATSLT----------------E---AGYV----GEDVENILTRLLQA----SDWNV-QKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp -EEEEEGGGCC-------------------------------CTHHHHHHHHH----TTTCH-HHHTTSEEEEETGGGC-
T ss_pred -EEEecchhhh----------------h---cCcC----CccHHHHHHHHHhh----ccchh-hhcCCeEEEEcCHHHHh
Confidence 1111111000 0 0010 10111112222221 11000 01245699999999998
Q ss_pred HH--------------HHHHHHHHHHHhc---------------------CCeeEEEEecCC------------------
Q 025758 144 RE--------------AQHSLRRTMEKYS---------------------ASCRLILCCNSS------------------ 170 (248)
Q Consensus 144 ~~--------------~~~~ll~~le~~~---------------------~~~~~Il~t~~~------------------ 170 (248)
.. .++.|++++++.. .+..+|+++|..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~ 230 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 230 (376)
T ss_dssp -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence 77 8999999999541 334566666520
Q ss_pred -----------------------CcccHHHhhhh-heeeecCCCHHHHHHHHHH----HHH---------HcCCCCCHHH
Q 025758 171 -----------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEF----IAK---------KEGLQLPSGF 213 (248)
Q Consensus 171 -----------------------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~----~~~---------~~~~~~~~~~ 213 (248)
..+.+++.+|+ .++.|++++.+++..++.. .+. ..++.+++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 310 (376)
T 1um8_A 231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEA 310 (376)
T ss_dssp CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred chhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHH
Confidence 12568899999 7899999999999999862 211 1245688999
Q ss_pred HHHHHHHcc---ccHHHHHHHHHHHhhh
Q 025758 214 ATRLAEKSN---RSLRRAILSFETCRVQ 238 (248)
Q Consensus 214 ~~~l~~~~~---g~~r~~~~~l~~~~~~ 238 (248)
+++|++.+. |++|.+.+.++.++..
T Consensus 311 ~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 311 IKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 999998865 9999999999888764
No 65
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.77 E-value=1.1e-19 Score=148.02 Aligned_cols=198 Identities=15% Similarity=0.241 Sum_probs=125.6
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhh-----------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
.++.+.+|++++|++.+++.+...+. ....+ +++|+||+|||||++|+++|..+..+- +.+++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~v~~~~ 79 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF---FSMGGSS 79 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC---CCCCSCT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEechHH
Confidence 57888999999999998888887664 12233 499999999999999999999763321 1111110
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH------
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA------ 146 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~------ 146 (248)
+. ....+..... ....+..... ..+.+++|||+|.+....
T Consensus 80 ~~-----------------~~~~~~~~~~--------~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~ 125 (268)
T 2r62_A 80 FI-----------------EMFVGLGASR--------VRDLFETAKK---------QAPSIIFIDEIDAIGKSRAAGGVV 125 (268)
T ss_dssp TT-----------------TSCSSSCSSS--------SSTTHHHHHH---------SCSCEEEESCGGGTTC--------
T ss_pred HH-----------------HhhcchHHHH--------HHHHHHHHHh---------cCCeEEEEeChhhhcccccccccC
Confidence 00 0000000000 1112332222 145699999999886432
Q ss_pred ---------HHHHHHHHHHhcC---CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 147 ---------QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 147 ---------~~~ll~~le~~~~---~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
.+.|++.++.... ...+|.+||.+..+.+++.+ |+ ..+.|++|+.++..+++...+....+. ++
T Consensus 126 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~ 204 (268)
T 2r62_A 126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-ND 204 (268)
T ss_dssp --CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SS
T ss_pred CCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-Cc
Confidence 3445666654322 24677788888888888888 66 679999999999999998877544332 22
Q ss_pred HHHHHHHHHccc-cHHHHHHHHHHHhhhcc
Q 025758 212 GFATRLAEKSNR-SLRRAILSFETCRVQQL 240 (248)
Q Consensus 212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~~~~ 240 (248)
..++.++..+.| +.|++.++++.+...+.
T Consensus 205 ~~~~~la~~~~g~~g~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 205 VNLQEVAKLTAGLAGADLANIINEAALLAG 234 (268)
T ss_dssp CCTTTTTSSSCSSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 235666666655 45677777777765543
No 66
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.76 E-value=8.3e-18 Score=147.54 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=132.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 6 ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
.+.+.+|++++|+..+++.|..++.. ....+++|+||||||||++|++++..+. ...+.+++..
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn~~~ 273 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPE 273 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEEHHH
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEEchH
Confidence 45678899999999999999887752 2233599999999999999999998641 1111111100
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------- 143 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------- 143 (248)
+ .....+ .........+..... ..+.+|||||+|.+.
T Consensus 274 l------------------------~~~~~g-~~~~~~~~~f~~A~~---------~~p~iLfLDEId~l~~~~~~~~~~ 319 (489)
T 3hu3_A 274 I------------------------MSKLAG-ESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGE 319 (489)
T ss_dssp H------------------------HTSCTT-HHHHHHHHHHHHHHH---------TCSEEEEEESHHHHCBCTTSCCCH
T ss_pred h------------------------hhhhcc-hhHHHHHHHHHHHHh---------cCCcEEEecchhhhccccccccch
Confidence 0 000011 111123334443332 246799999996553
Q ss_pred --HHHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 025758 144 --REAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216 (248)
Q Consensus 144 --~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 216 (248)
...++.|++.++... .+..+|.+||.+..+.+++++ |+ ..+.|+.|+.++..+++..++....+.. +..+..
T Consensus 320 ~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~ 398 (489)
T 3hu3_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQ 398 (489)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHH
T ss_pred HHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHH
Confidence 356788999998653 346788889999899999998 55 4799999999999999998876655442 233677
Q ss_pred HHHHccc-cHHHHHHHHHHHhhhc
Q 025758 217 LAEKSNR-SLRRAILSFETCRVQQ 239 (248)
Q Consensus 217 l~~~~~g-~~r~~~~~l~~~~~~~ 239 (248)
++..+.| +.+++.++++.+...+
T Consensus 399 la~~t~g~s~~dL~~L~~~A~~~a 422 (489)
T 3hu3_A 399 VANETHGHVGADLAALCSEAALQA 422 (489)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHH
Confidence 7777766 4666666666665444
No 67
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.76 E-value=1.2e-16 Score=132.46 Aligned_cols=201 Identities=17% Similarity=0.149 Sum_probs=125.7
Q ss_pred ccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758 13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (248)
++++|+....+.+...+.. ....+++|+||+|||||++|++++..........+.+++..+ .. .. ..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~-------~~--~l--~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL-------NE--SL--LE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC-------CH--HH--HH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC-------Ch--HH--HH
Confidence 4678988877777666543 233459999999999999999999854222222222222100 00 00 00
Q ss_pred ccceeeeCCCCcCcchhH--HHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----------
Q 025758 91 SANHVELSPSDAGFQDRY--VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------- 158 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------- 158 (248)
....+.. .+..... .....+. ..+..+++|||++.|+...+..|++++++..
T Consensus 71 -~~lfg~~---~g~~tg~~~~~~g~~~------------~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 71 -SELFGHE---KGAFTGADKRREGRFV------------EADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp -HHHTCCC---SSCCC---CCCCCHHH------------HHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred -HHhcCcc---ccccCchhhhhcCHHH------------hcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccc
Confidence 0000000 0000000 0000011 1123589999999999999999999998753
Q ss_pred -CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCC--HHHHHHHHHHHHHH----c---CCCCCHHHHHHHHH
Q 025758 159 -ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPT--EEQIVKVLEFIAKK----E---GLQLPSGFATRLAE 219 (248)
Q Consensus 159 -~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~--~~~~~~il~~~~~~----~---~~~~~~~~~~~l~~ 219 (248)
.+..+|++||... .+.+++.+|+ ..+.+|++. .+++..++...+.+ . ...+++++++.+..
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 3467888888762 3567888997 456788877 46666666554432 2 24688999999999
Q ss_pred Hc-cccHHHHHHHHHHHhhhcc
Q 025758 220 KS-NRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 220 ~~-~g~~r~~~~~l~~~~~~~~ 240 (248)
.. .||+|++.+.++.++..+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~~ 236 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLLT 236 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCC
Confidence 87 9999999999999886543
No 68
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.76 E-value=1.1e-17 Score=146.69 Aligned_cols=198 Identities=17% Similarity=0.260 Sum_probs=127.6
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhh---c--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~---~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
|.+. .+.+|+|++|+++++..+...+. . .+.+ +++|+|||||||||+|+++++.+. .+.+.+++
T Consensus 22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~~~i~i~g 97 (499)
T 2dhr_A 22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG 97 (499)
T ss_dssp ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence 4444 78999999999999888776542 1 1233 499999999999999999999652 23333333
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------ 144 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------ 144 (248)
..+. ....+ . ....+..+-.... ...+.+++|||+|.+..
T Consensus 98 ~~~~------------------------~~~~g----~-~~~~v~~lfq~a~-----~~~p~il~IDEId~l~~~r~~~~ 143 (499)
T 2dhr_A 98 SDFV------------------------EMFVG----V-GAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGV 143 (499)
T ss_dssp GGGT------------------------SSCTT----H-HHHHHHHHTTTSS-----SSSSCEEEEECGGGTCCCSSSST
T ss_pred hHHH------------------------Hhhhh----h-HHHHHHHHHHHHH-----hcCCCEEEEehHHHHHHhhccCc
Confidence 2111 00001 0 1111222211110 23567999999987631
Q ss_pred -----HH---HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 145 -----EA---QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 145 -----~~---~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
.. .+.++..++.... ...++.++|.+..+.+++.+++ ..+.++.|+.+++.+++...+. ++.+++
T Consensus 144 ~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~ 221 (499)
T 2dhr_A 144 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE 221 (499)
T ss_dssp TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCC
T ss_pred CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCCh
Confidence 22 2344444443322 2456667788878888998854 5899999999999999986553 445554
Q ss_pred HH-HHHHHHHccccH-HHHHHHHHHHhhhcc
Q 025758 212 GF-ATRLAEKSNRSL-RRAILSFETCRVQQL 240 (248)
Q Consensus 212 ~~-~~~l~~~~~g~~-r~~~~~l~~~~~~~~ 240 (248)
++ +..++..+.|+. |++.++++.+...+.
T Consensus 222 dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 222 DVDLALLAKRTPGFVGADLENLLNEAALLAA 252 (499)
T ss_dssp SSTTHHHHTTSCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 44 888999999876 898888888775443
No 69
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.75 E-value=3.7e-17 Score=132.06 Aligned_cols=198 Identities=17% Similarity=0.254 Sum_probs=124.8
Q ss_pred ccccCCCCCcccccccHHHHHHHHHHhh---c--------CCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT---E--------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~---~--------~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
++..+.+.+|++++|++.++..+..... . -.. .+++|+|||||||||+++++++.+. .+.+.+++
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~ 82 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG 82 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence 3567788999999999888776665432 1 122 2499999999999999999998652 33333333
Q ss_pred cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH------
Q 025758 71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------ 144 (248)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------ 144 (248)
..+. ... .+ .....+...+.... ...+.++++||+|.+..
T Consensus 83 ~~~~---------------------~~~---~~-~~~~~i~~~~~~~~---------~~~~~i~~~Deid~l~~~~~~~~ 128 (254)
T 1ixz_A 83 SDFV---------------------EMF---VG-VGAARVRDLFETAK---------RHAPCIVFIDEIDAVGRKRGSGV 128 (254)
T ss_dssp HHHH---------------------HSC---TT-HHHHHHHHHHHHHT---------TSSSEEEEEETHHHHHC------
T ss_pred HHHH---------------------HHH---hh-HHHHHHHHHHHHHH---------hcCCeEEEehhhhhhhcccCccc
Confidence 2111 000 00 00111222233221 12467999999975521
Q ss_pred -----H---HHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758 145 -----E---AQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS 211 (248)
Q Consensus 145 -----~---~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~ 211 (248)
. ..+.++..++..... ..++.+++++..+.+++.+| + ..+.++.|+.++..++++..+. ++.+++
T Consensus 129 ~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~ 206 (254)
T 1ixz_A 129 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE 206 (254)
T ss_dssp ---CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCT
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCc
Confidence 1 123444444433222 35667788888899999884 4 5799999999999999987654 444444
Q ss_pred HH-HHHHHHHcccc-HHHHHHHHHHHhhhc
Q 025758 212 GF-ATRLAEKSNRS-LRRAILSFETCRVQQ 239 (248)
Q Consensus 212 ~~-~~~l~~~~~g~-~r~~~~~l~~~~~~~ 239 (248)
++ +..++..+.|. .|++.++++.+...+
T Consensus 207 ~~~~~~la~~~~G~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 207 DVDLALLAKRTPGFVGADLENLLNEAALLA 236 (254)
T ss_dssp TCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 44 88899998885 478888887766543
No 70
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.74 E-value=2.9e-17 Score=134.03 Aligned_cols=183 Identities=17% Similarity=0.291 Sum_probs=111.9
Q ss_pred ccccccHHHHHHHHH-------Hhh---cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758 13 DQVIVHQDIAQNLKK-------LVT---EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI 82 (248)
Q Consensus 13 ~~lig~~~~~~~l~~-------~~~---~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
..++|+....+.+.. .+. .....+++|+||+|||||++|++++..+.++ .+.++ ++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~-------~~---- 98 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKIC-------SP---- 98 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEE-------CG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEe-------CH----
Confidence 456776655443333 333 2223349999999999999999999975221 01110 00
Q ss_pred ccceeeecccceeeeCCCCcCcchh---HHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC----------CHHHHHH
Q 025758 83 DLELTTLSSANHVELSPSDAGFQDR---YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL----------SREAQHS 149 (248)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l----------~~~~~~~ 149 (248)
. .+ .+.... ....+.+.... ...+.+++|||+|.| .....+.
T Consensus 99 ----------~--~~----~g~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~ 153 (272)
T 1d2n_A 99 ----------D--KM----IGFSETAKCQAMKKIFDDAY---------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQA 153 (272)
T ss_dssp ----------G--GC----TTCCHHHHHHHHHHHHHHHH---------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHH
T ss_pred ----------H--Hh----cCCchHHHHHHHHHHHHHHH---------hcCCcEEEEEChhhhhccCCCChhHHHHHHHH
Confidence 0 00 111111 12233333222 235789999999876 3334445
Q ss_pred HHHHHHHh---cCCeeEEEEecCCCcccH-HHhhhh-heeeecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758 150 LRRTMEKY---SASCRLILCCNSSSKVTE-AIRSRC-LNIRINSPTE-EQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (248)
Q Consensus 150 ll~~le~~---~~~~~~Il~t~~~~~~~~-~l~sR~-~~i~~~~~~~-~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g 223 (248)
|...++.. .....+|.+||.+..+.+ .+.+|+ ..+.+++++. +++..++.. .+ .++++.+..+++.+.|
T Consensus 154 L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~~-~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 154 LLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----LG-NFKDKERTTIAQQVKG 228 (272)
T ss_dssp HHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----HT-CSCHHHHHHHHHHHTT
T ss_pred HHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----cC-CCCHHHHHHHHHHhcC
Confidence 55555432 222346666776655555 578885 7889988887 666666653 22 4679999999999877
Q ss_pred -----cHHHHHHHHHHHhhhc
Q 025758 224 -----SLRRAILSFETCRVQQ 239 (248)
Q Consensus 224 -----~~r~~~~~l~~~~~~~ 239 (248)
++|+++++++.+...+
T Consensus 229 ~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 229 KKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp SEEEECHHHHHHHHHHHTTSC
T ss_pred CCccccHHHHHHHHHHHhhhc
Confidence 9999999999887544
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.73 E-value=2.5e-16 Score=128.88 Aligned_cols=196 Identities=17% Similarity=0.280 Sum_probs=124.4
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhh---c--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~---~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
....+.+|++++|++.++..+..... . -..+ +++|+|||||||||+++++++.+. .+.+.+++..
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~ 108 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSD 108 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEecHHH
Confidence 33477899999999988877765432 1 1222 499999999999999999998652 3333333321
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------- 143 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------- 143 (248)
+. .. ..+ .....+...+..... ..+.++++||++.+.
T Consensus 109 ~~---------------------~~---~~~-~~~~~i~~~~~~~~~---------~~~~i~~iDeid~l~~~~~~~~~~ 154 (278)
T 1iy2_A 109 FV---------------------EM---FVG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVGG 154 (278)
T ss_dssp HH---------------------HS---TTT-HHHHHHHHHHHHHHT---------SCSEEEEEETHHHHHCC-------
T ss_pred HH---------------------HH---Hhh-HHHHHHHHHHHHHHh---------cCCcEEehhhhHhhhcccccccCC
Confidence 11 00 000 001112233332221 245799999997542
Q ss_pred --HHHHHHHHHHHHHhc---C--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758 144 --REAQHSLRRTMEKYS---A--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (248)
Q Consensus 144 --~~~~~~ll~~le~~~---~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 213 (248)
......+.+++.+.. . ...++.+++++..+.+++.+ |+ ..+.|+.|+.++..+++...+. +..+++++
T Consensus 155 ~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~ 232 (278)
T 1iy2_A 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDV 232 (278)
T ss_dssp -CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTC
T ss_pred cchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCccc
Confidence 122333444444332 2 24567778999899999988 44 5799999999999999987664 34444444
Q ss_pred -HHHHHHHccccH-HHHHHHHHHHhhhc
Q 025758 214 -ATRLAEKSNRSL-RRAILSFETCRVQQ 239 (248)
Q Consensus 214 -~~~l~~~~~g~~-r~~~~~l~~~~~~~ 239 (248)
+..++..+.|+. |++.++++.+...+
T Consensus 233 ~~~~la~~~~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 233 DLALLAKRTPGFVGADLENLLNEAALLA 260 (278)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 888999998865 77777777776533
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.70 E-value=1.4e-16 Score=146.00 Aligned_cols=191 Identities=17% Similarity=0.249 Sum_probs=125.6
Q ss_pred CCCCCcccccccHHHHHHHHHHhh----------c-C-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 7 YRPKTLDQVIVHQDIAQNLKKLVT----------E-Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~~~~~----------~-~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
....+|+|+.|.+.+++.|+.++. . | +.| ++||+||||||||++|+++|+++..+ .+.+++..
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~~~~- 273 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPE- 273 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEEHHH-
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEEhHH-
Confidence 345789999999999988887763 1 1 223 49999999999999999999865221 11111110
Q ss_pred eeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH---------
Q 025758 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------- 144 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------- 144 (248)
+.....+ .....+++.+.... ...|.||+|||+|.+.+
T Consensus 274 -----------------------l~sk~~g-ese~~lr~lF~~A~---------~~~PsIIfIDEiDal~~~r~~~~~~~ 320 (806)
T 3cf2_A 274 -----------------------IMSKLAG-ESESNLRKAFEEAE---------KNAPAIIFIDELDAIAPKREKTHGEV 320 (806)
T ss_dssp -----------------------HHSSCTT-HHHHHHHHHHHHHT---------TSCSEEEEEESGGGTCCTTTTCCCTT
T ss_pred -----------------------hhcccch-HHHHHHHHHHHHHH---------HcCCeEEEEehhcccccccCCCCChH
Confidence 0000111 11223444444333 34678999999998742
Q ss_pred --HHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758 145 --EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217 (248)
Q Consensus 145 --~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l 217 (248)
...+.|+..++... .++.+|.+||++..+.+++++ |+ ..|.++.|+.++..+|++..+.+..+. ++-.+..|
T Consensus 321 ~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~l 399 (806)
T 3cf2_A 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQV 399 (806)
T ss_dssp HHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHH
T ss_pred HHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHH
Confidence 23566777777653 345788889999999999998 77 689999999999999998766543332 22337778
Q ss_pred HHHccc-cHHHHHHHHHHH
Q 025758 218 AEKSNR-SLRRAILSFETC 235 (248)
Q Consensus 218 ~~~~~g-~~r~~~~~l~~~ 235 (248)
+..+.| ...++.++++.+
T Consensus 400 A~~T~GfsgaDL~~Lv~eA 418 (806)
T 3cf2_A 400 ANETHGHVGADLAALCSEA 418 (806)
T ss_dssp HHHCCSCCHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHH
Confidence 877654 344444444443
No 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.68 E-value=5.6e-17 Score=137.74 Aligned_cols=194 Identities=22% Similarity=0.301 Sum_probs=121.5
Q ss_pred ccccHHHHHHHHHHhh-------------cC--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758 15 VIVHQDIAQNLKKLVT-------------EQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79 (248)
Q Consensus 15 lig~~~~~~~l~~~~~-------------~~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~ 79 (248)
++|++.+++.+...+. .. ...+++|+||||||||++|+++|..+..+ .+.+++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~---~~~~~~~-------- 85 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP---FTMADAT-------- 85 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHH--------
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---EEEechH--------
Confidence 5899999998888772 11 23359999999999999999999965211 1111110
Q ss_pred cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------------
Q 025758 80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------------- 145 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-------------- 145 (248)
.+... +. ........+..+....+..+ ....+.+++|||+|.+.+.
T Consensus 86 ----------------~l~~~--~~-~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~ 145 (363)
T 3hws_A 86 ----------------TLTEA--GY-VGEDVENIIQKLLQKCDYDV-QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEG 145 (363)
T ss_dssp ----------------HHTTC--HH-HHHHHTHHHHHHHHHTTTCH-HHHHHCEEEEECHHHHCCCSSCC---CHHHHHH
T ss_pred ----------------Hhccc--cc-ccccHHHHHHHHHHHhhhhH-HhcCCcEEEEeChhhhcccccccccccccchHH
Confidence 00000 00 01111112222211111100 0225679999999987755
Q ss_pred HHHHHHHHHHHh---------------------cCCeeEEEEecCC----------Cc----------------------
Q 025758 146 AQHSLRRTMEKY---------------------SASCRLILCCNSS----------SK---------------------- 172 (248)
Q Consensus 146 ~~~~ll~~le~~---------------------~~~~~~Il~t~~~----------~~---------------------- 172 (248)
.++.|+++|+.. ..+..||++++.. ..
T Consensus 146 ~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l 225 (363)
T 3hws_A 146 VQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGEL 225 (363)
T ss_dssp HHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHH
T ss_pred HHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHH
Confidence 899999999821 1233456665532 01
Q ss_pred -------------ccHHHhhhh-heeeecCCCHHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHHc---c
Q 025758 173 -------------VTEAIRSRC-LNIRINSPTEEQIVKVLEF----IAK-------KEG--LQLPSGFATRLAEKS---N 222 (248)
Q Consensus 173 -------------~~~~l~sR~-~~i~~~~~~~~~~~~il~~----~~~-------~~~--~~~~~~~~~~l~~~~---~ 222 (248)
+.++|.+|+ .++.|.+|+.+++.+++.. .+. ..+ +.+++++++.|++.+ .
T Consensus 226 ~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~ 305 (363)
T 3hws_A 226 LAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK 305 (363)
T ss_dssp HHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCc
Confidence 678899999 4666999999999998875 222 123 357899999999753 5
Q ss_pred ccHHHHHHHHHHHhhhc
Q 025758 223 RSLRRAILSFETCRVQQ 239 (248)
Q Consensus 223 g~~r~~~~~l~~~~~~~ 239 (248)
+++|.+.+.++.+....
T Consensus 306 ~gaR~L~~~ie~~~~~~ 322 (363)
T 3hws_A 306 TGARGLRSIVEAALLDT 322 (363)
T ss_dssp CTTTTHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHH
Confidence 67899999888877544
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=1.2e-15 Score=131.23 Aligned_cols=214 Identities=14% Similarity=0.198 Sum_probs=128.3
Q ss_pred ccCCCCCcccccccHHHHHHHHHHh-h---cC---CCCeeEE--ECCCCCCHHHHHHHHHHHHcCC------Ccccceec
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLV-T---EQ---DCPHLLF--YGPPGSGKKTLIMALLRQVFGP------GAEKVKVE 69 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~-~---~~---~~~~ill--~Gp~G~GKTtla~~ia~~l~~~------~~~~~~~~ 69 (248)
.+|.| ++++|.+..++.|..++ . .+ ....+++ +||+|+|||++++.++..+... ....+.++
T Consensus 17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 46666 67899888777777766 3 22 3345888 9999999999999999876331 11111111
Q ss_pred ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758 70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------ 143 (248)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------ 143 (248)
+. .......+ .......++......+.............+.. .+.+.+|+|||++.++
T Consensus 94 ~~-------~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~llvlDe~~~l~~~~~~~ 157 (412)
T 1w5s_A 94 AF-------NAPNLYTI-LSLIVRQTGYPIQVRGAPALDILKALVDNLYV--------ENHYLLVILDEFQSMLSSPRIA 157 (412)
T ss_dssp GG-------GCCSHHHH-HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH--------HTCEEEEEEESTHHHHSCTTSC
T ss_pred CC-------CCCCHHHH-HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEeCHHHHhhccCcc
Confidence 10 00000000 00000001111111111111112222222221 2357799999998764
Q ss_pred HHHHHHHHHHHHHhc-----CCeeEEEEecCCC---ccc---HHHhhhh-heeeecCCCHHHHHHHHHHHHHHcC--CCC
Q 025758 144 REAQHSLRRTMEKYS-----ASCRLILCCNSSS---KVT---EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG--LQL 209 (248)
Q Consensus 144 ~~~~~~ll~~le~~~-----~~~~~Il~t~~~~---~~~---~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~--~~~ 209 (248)
......+++.++... ....+|++++.+. .+. +.+.+|+ ..+.|++++.+++.+++..++...+ ..+
T Consensus 158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~ 237 (412)
T 1w5s_A 158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW 237 (412)
T ss_dssp HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC
T ss_pred hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 355566677776543 3455777776654 233 5566665 3499999999999999988776532 257
Q ss_pred CHHHHHHHHHHcc------ccHHHHHHHHHHHhh
Q 025758 210 PSGFATRLAEKSN------RSLRRAILSFETCRV 237 (248)
Q Consensus 210 ~~~~~~~l~~~~~------g~~r~~~~~l~~~~~ 237 (248)
+++.+..+.+.+. |++|.++++++.+..
T Consensus 238 ~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 238 EPRHLELISDVYGEDKGGDGSARRAIVALKMACE 271 (412)
T ss_dssp CHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 8999999999999 999999998877653
No 75
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.65 E-value=1.7e-15 Score=116.03 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=83.6
Q ss_pred cccCCCCCcccccc----cHHHHHHHHHHhhcCC---CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccc-eecccceee
Q 025758 4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTEQD---CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKV-KVENKTWKI 75 (248)
Q Consensus 4 ~~ky~p~~~~~lig----~~~~~~~l~~~~~~~~---~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~-~~~~~~~~~ 75 (248)
++||++.+|+++++ +..+++.+..++.+-. ...++|+||||+||||+++++++.+.......+ .+..
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~----- 75 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT----- 75 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH-----
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH-----
Confidence 57999999999986 5667777777775433 234999999999999999999996631111000 0000
Q ss_pred ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCC-cCCCCCCeeEEEEeCCC--CCCHHHHHHHHH
Q 025758 76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-DTKGKRGFKVLVLNEVD--KLSREAQHSLRR 152 (248)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~viiiDE~d--~l~~~~~~~ll~ 152 (248)
................. .+....++++++|||++ .+++..+..++.
T Consensus 76 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 76 -------------------------------KDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp -------------------------------HHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 00000000000000000 00001256799999997 678888889999
Q ss_pred HHHHhc-CCeeEEEEecCCCcc
Q 025758 153 TMEKYS-ASCRLILCCNSSSKV 173 (248)
Q Consensus 153 ~le~~~-~~~~~Il~t~~~~~~ 173 (248)
+++... .+..+|++||.+...
T Consensus 125 ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 125 IITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHHcCCCEEEEcCCChhH
Confidence 998764 456788888887654
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.64 E-value=8.9e-15 Score=119.40 Aligned_cols=193 Identities=18% Similarity=0.177 Sum_probs=110.3
Q ss_pred CCCCCcccccccHHHHHHHHHHhh------------cCCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 7 YRPKTLDQVIVHQDIAQNLKKLVT------------EQDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 7 y~p~~~~~lig~~~~~~~l~~~~~------------~~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
+...+|+|+.|.+.+++.|...+. +-.. .+++|+|||||||||+++++|+.+.. +.+.+++..+
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l 80 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVKGPEL 80 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHH
Confidence 346789999999999998887542 1122 23999999999999999999996521 2333333211
Q ss_pred eeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------
Q 025758 74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------- 145 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-------- 145 (248)
. ....+ .....+...+..... ..+.++++||++.+...
T Consensus 81 ~------------------------~~~~~-~~~~~i~~vf~~a~~---------~~p~i~~~Deid~~~~~r~~~~~~~ 126 (274)
T 2x8a_A 81 L------------------------NMYVG-ESERAVRQVFQRAKN---------SAPCVIFFDEVDALCPRRSDRETGA 126 (274)
T ss_dssp C------------------------SSTTH-HHHHHHHHHHHHHHH---------TCSEEEEEETCTTTCC---------
T ss_pred H------------------------hhhhh-HHHHHHHHHHHHHHh---------cCCCeEeeehhhhhhcccCCCcchH
Confidence 0 00000 011122333332221 14579999999875311
Q ss_pred ---HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHH
Q 025758 146 ---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKE-GLQLP-SGFAT 215 (248)
Q Consensus 146 ---~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~-~~~~~-~~~~~ 215 (248)
..+.++..+.... ....++.++|++..+.++++. |+ ..|.++.|+.++..++++..+... ...++ +-.++
T Consensus 127 ~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~ 206 (274)
T 2x8a_A 127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLE 206 (274)
T ss_dssp CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHH
T ss_pred HHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHH
Confidence 1234444444332 234577788999999999987 77 689999999999999999877542 22222 22366
Q ss_pred HHHHHc---cccHHHHHHHHHHHh
Q 025758 216 RLAEKS---NRSLRRAILSFETCR 236 (248)
Q Consensus 216 ~l~~~~---~g~~r~~~~~l~~~~ 236 (248)
.++... +-+..++.++++.++
T Consensus 207 ~la~~~~~~g~sgadl~~l~~~a~ 230 (274)
T 2x8a_A 207 AIAGDLRCDCYTGADLSALVREAS 230 (274)
T ss_dssp HHHTCSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHhhccCCcCHHHHHHHHHHHH
Confidence 666532 223444444444443
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.64 E-value=4.1e-16 Score=143.01 Aligned_cols=178 Identities=24% Similarity=0.292 Sum_probs=104.8
Q ss_pred CCCCcccccccHHHHHHHHHHhh----------c-C-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVT----------E-Q-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~----------~-~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~ 74 (248)
...+|+++.|.+++++.|...+. . + +. .++||+||||||||.+|+++|.++..+ .+.+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~---f~~v~~---- 544 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKG---- 544 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE---EEECCH----
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc---eEEecc----
Confidence 34678999999999999988763 1 1 12 249999999999999999999865211 111111
Q ss_pred eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH---------
Q 025758 75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------- 145 (248)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------- 145 (248)
. .+.....+. ....+++.+..... ..|.||+|||+|.+-+.
T Consensus 545 -----------------~---~l~s~~vGe-se~~vr~lF~~Ar~---------~~P~IifiDEiDsl~~~R~~~~~~~~ 594 (806)
T 3cf2_A 545 -----------------P---ELLTMWFGE-SEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNIGDGG 594 (806)
T ss_dssp -----------------H---HHHTTTCSS-CHHHHHHHHHHHHT---------TCSEEEECSCGGGCC-----------
T ss_pred -----------------c---hhhccccch-HHHHHHHHHHHHHH---------cCCceeechhhhHHhhccCCCCCCCc
Confidence 0 011111111 12345666665543 35779999999987421
Q ss_pred -----HHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758 146 -----AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (248)
Q Consensus 146 -----~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 215 (248)
..+.|+..|+.... ++.+|.+||++..+.++++. |+ ..|+|+.|+.++..++++..+.+..+. ++-.++
T Consensus 595 ~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~ 673 (806)
T 3cf2_A 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLE 673 (806)
T ss_dssp ---CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----
T ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHH
Confidence 24567777775533 34566789999999999987 88 689999999999999998776554433 122366
Q ss_pred HHHHHccc
Q 025758 216 RLAEKSNR 223 (248)
Q Consensus 216 ~l~~~~~g 223 (248)
.|++.+.|
T Consensus 674 ~la~~t~g 681 (806)
T 3cf2_A 674 FLAKMTNG 681 (806)
T ss_dssp --------
T ss_pred HHHHhCCC
Confidence 67666543
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.63 E-value=3e-15 Score=131.33 Aligned_cols=197 Identities=11% Similarity=0.070 Sum_probs=120.0
Q ss_pred ccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccc
Q 025758 13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA 92 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (248)
..++|++.+++.+...+..+ .+++|+||||+|||++|++++..+ +.......... . .....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~-------~---------~~t~~ 82 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMT-------R---------FSTPE 82 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECC-------T---------TCCHH
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHH-------h---------cCCHH
Confidence 34689999999888887665 379999999999999999999844 21110000000 0 00000
Q ss_pred ceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------CCeeE
Q 025758 93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------ASCRL 163 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------~~~~~ 163 (248)
+.++. ........ -..+...... ....+.|++|||++.+++..++.|+..+++.. ....|
T Consensus 83 dL~G~-------~~~~~~~~-~g~~~~~~~g---~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~ 151 (500)
T 3nbx_X 83 EVFGP-------LSIQALKD-EGRYERLTSG---YLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRL 151 (500)
T ss_dssp HHHCC-------BC-----------CBCCTT---SGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred HhcCc-------ccHHHHhh-chhHHhhhcc---CCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence 00000 00000000 0001000000 01145699999999999999999999998532 11224
Q ss_pred -EEEecCCCc---ccHHHhhhh-heeeecCCCH-HHHHHHHHHHHH-----------------------HcCCCCCHHHH
Q 025758 164 -ILCCNSSSK---VTEAIRSRC-LNIRINSPTE-EQIVKVLEFIAK-----------------------KEGLQLPSGFA 214 (248)
Q Consensus 164 -Il~t~~~~~---~~~~l~sR~-~~i~~~~~~~-~~~~~il~~~~~-----------------------~~~~~~~~~~~ 214 (248)
|++||.... ..+++.+|+ ..+.+++|+. ++...++..... -.++.++++++
T Consensus 152 iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~ 231 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVF 231 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHH
T ss_pred hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHH
Confidence 777775443 557999998 4588899987 566677764321 13677899999
Q ss_pred HHHHHHc----------cccHHHHHHHHHHHhhhc
Q 025758 215 TRLAEKS----------NRSLRRAILSFETCRVQQ 239 (248)
Q Consensus 215 ~~l~~~~----------~g~~r~~~~~l~~~~~~~ 239 (248)
+++++.. +.+.|.++.++..+...+
T Consensus 232 e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A 266 (500)
T 3nbx_X 232 ELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASA 266 (500)
T ss_dssp HHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHH
Confidence 9998766 447888887776655433
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.62 E-value=1.6e-14 Score=119.02 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=90.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (248)
+++|+||||||||++|+++|..+..+ .+.+++..+ .....+. ....+.+.+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~---~i~v~~~~l------------------------~~~~~g~-~~~~i~~~f~ 89 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGIN---PIMMSAGEL------------------------ESGNAGE-PAKLIRQRYR 89 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCC---CEEEEHHHH------------------------HCC---H-HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeHHHh------------------------hhccCch-hHHHHHHHHH
Confidence 49999999999999999999987221 111111000 0000111 1112333343
Q ss_pred HHHhcCCCcCCCCCCeeEEEEeCCCCCCH-------------HHHHHHHHHHHHh-------------cCCeeEEEEecC
Q 025758 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------EAQHSLRRTMEKY-------------SASCRLILCCNS 169 (248)
Q Consensus 116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------------~~~~~ll~~le~~-------------~~~~~~Il~t~~ 169 (248)
...... ....+.|++|||+|.+.+ ..++.|+.+++.. ..++.+|++||+
T Consensus 90 ~a~~~~-----~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 90 EAAEII-----RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp HHHHHH-----TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred HHHHHH-----hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 332110 023677999999987754 2347788887622 234679999999
Q ss_pred CCcccHHHhh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758 170 SSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (248)
Q Consensus 170 ~~~~~~~l~s--R~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g 223 (248)
+..+.+++++ |+..+.+ .|+.++..+++...+...++. .+.+..+.....|
T Consensus 165 ~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~~--~~~l~~~~~~~~~ 217 (293)
T 3t15_A 165 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNVP--AEDVVKIVDNFPG 217 (293)
T ss_dssp CCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCCC--HHHHHHHHHHSCS
T ss_pred cccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCCC--HHHHHHHhCCCCc
Confidence 9999999985 5543223 469999999999888776554 6666666655543
No 80
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.60 E-value=1.4e-14 Score=124.70 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=78.6
Q ss_pred CeeEEEEeCCCCCCH------------HHHHHHHHHHHHh----------cCCeeEEEEe----cCCCcccHHHhhhhhe
Q 025758 130 GFKVLVLNEVDKLSR------------EAQHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCLN 183 (248)
Q Consensus 130 ~~~viiiDE~d~l~~------------~~~~~ll~~le~~----------~~~~~~Il~t----~~~~~~~~~l~sR~~~ 183 (248)
...++++||+|.+.. ..|.+|++++|.. ..+..||++. +++..+.|.|.+|+.+
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i 329 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 329 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence 456899999998742 2578999999952 2334577776 3556677999999965
Q ss_pred -eeecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHHc--------cccHHHHHHHHHHHhh
Q 025758 184 -IRINSPTEEQIVKVLEF-----------IAKKEG--LQLPSGFATRLAEKS--------NRSLRRAILSFETCRV 237 (248)
Q Consensus 184 -i~~~~~~~~~~~~il~~-----------~~~~~~--~~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~~ 237 (248)
+.|++++.+++..|+.. .+..++ +.++++++..|++.+ ...+|.+-+.++.++.
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 99999999999999941 222233 458899999999753 3567777777776653
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.56 E-value=3.8e-14 Score=104.66 Aligned_cols=133 Identities=18% Similarity=0.170 Sum_probs=85.4
Q ss_pred ccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758 13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (248)
++++|+....+.+...+.. ....+++|+||+|||||++|++++..........+ +++. .
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~-------~----------- 61 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL-------T----------- 61 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC-------C-----------
T ss_pred CCceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC-------C-----------
Confidence 3678988888877776642 23345999999999999999999974321111111 1110 0
Q ss_pred ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758 91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~ 170 (248)
.... . .....+... ...+++|||++.+++..+..|+..++....+..+|++||.+
T Consensus 62 -------~~~~---~---~~~~~~~~a------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 62 -------PDNA---P---QLNDFIALA------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp -------TTTS---S---CHHHHHHHH------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred -------CCcc---h---hhhcHHHHc------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0000 0 011112211 22479999999999999999999997767678899999976
Q ss_pred C-------cccHHHhhhh--heeeecCC
Q 025758 171 S-------KVTEAIRSRC--LNIRINSP 189 (248)
Q Consensus 171 ~-------~~~~~l~sR~--~~i~~~~~ 189 (248)
. .+.+.+..|+ ..|.+|++
T Consensus 117 ~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 117 LVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred HHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 3 3567777776 45666664
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=6.7e-15 Score=132.15 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=115.7
Q ss_pred ccccccHHHHHHHHHHhhcCCC-----------CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758 13 DQVIVHQDIAQNLKKLVTEQDC-----------PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN 81 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~~~~-----------~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (248)
..++|++.+++.+...+..+.. .+++|+||||||||++|++++..+ ..... . .+ .....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~-~r~~~--~-~~------~~~~~ 364 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA-PRAVY--T-TG------KGSTA 364 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC-SCEEC--C-CT------TCSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC-CCcee--c-CC------Ccccc
Confidence 3568999999988777766531 169999999999999999999843 21100 0 00 00000
Q ss_pred cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758 82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--- 158 (248)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--- 158 (248)
..+........ . ........+ .+. ..+..+++|||++.+++..++.|++.|++..
T Consensus 365 --~~l~~~~~~~~--~-~g~~~~~~G-----~l~------------~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i 422 (595)
T 3f9v_A 365 --AGLTAAVVREK--G-TGEYYLEAG-----ALV------------LADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSI 422 (595)
T ss_dssp --TTSEEECSSGG--G-TSSCSEEEC-----HHH------------HHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEE
T ss_pred --ccccceeeecc--c-cccccccCC-----eeE------------ecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEE
Confidence 00000000000 0 000000000 000 0133599999999999999999999998642
Q ss_pred ----------CCeeEEEEecCCC-------------cccHHHhhhh-h-eeeecCCCHHHHHHHHHHHHHHc--------
Q 025758 159 ----------ASCRLILCCNSSS-------------KVTEAIRSRC-L-NIRINSPTEEQIVKVLEFIAKKE-------- 205 (248)
Q Consensus 159 ----------~~~~~Il~t~~~~-------------~~~~~l~sR~-~-~i~~~~~~~~~~~~il~~~~~~~-------- 205 (248)
....+|.++|... .+.+++.||+ . .+..+.|+.+ ...++..++...
T Consensus 423 ~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~ 501 (595)
T 3f9v_A 423 AKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNI 501 (595)
T ss_dssp ESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSST
T ss_pred ecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccC
Confidence 2234777777664 7889999999 3 4444555555 555555554321
Q ss_pred -----------------CCCCCHHHHHHHHHH---------------ccccHHHHHHHHHHHhhhcc
Q 025758 206 -----------------GLQLPSGFATRLAEK---------------SNRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 206 -----------------~~~~~~~~~~~l~~~---------------~~g~~r~~~~~l~~~~~~~~ 240 (248)
.-.+++++.+.|.+. ..+++|++.+++..+...+.
T Consensus 502 l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 568 (595)
T 3f9v_A 502 IDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAK 568 (595)
T ss_dssp TCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHH
Confidence 114566666777665 45688888888877665444
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.53 E-value=7.6e-14 Score=129.46 Aligned_cols=181 Identities=18% Similarity=0.273 Sum_probs=117.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 5 ~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
+.+.+.+|++++|++.+++.|..++.. ....+++|+|||||||||+|+++|+.+.. ..+.+++.
T Consensus 196 ~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~i~v~~~ 272 (806)
T 1ypw_A 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGP 272 (806)
T ss_dssp CCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EEEEEEHH
T ss_pred cccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cEEEEEch
Confidence 356788999999999988888877642 12234999999999999999999985411 11222221
Q ss_pred ceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758 72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------- 143 (248)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------- 143 (248)
.+ .....+ .....+...+..... +.+.++++||++.+.
T Consensus 273 ~l------------------------~~~~~g-~~~~~l~~vf~~a~~---------~~p~il~iDEid~l~~~~~~~~~ 318 (806)
T 1ypw_A 273 EI------------------------MSKLAG-ESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHG 318 (806)
T ss_dssp HH------------------------SSSSTT-HHHHHHHHHHHHHHH---------HCSEEEEEESGGGTSCTTSCCCS
T ss_pred Hh------------------------hhhhhh-hHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhhccccccc
Confidence 00 000011 111223333443332 245799999997653
Q ss_pred ---HHHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758 144 ---REAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT 215 (248)
Q Consensus 144 ---~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 215 (248)
....+.++..++... ....+|+++|++..+.+.+++ |+ ..+.+..|+.++...++...+.+..+. ++..+.
T Consensus 319 ~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~ 397 (806)
T 1ypw_A 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLE 397 (806)
T ss_dssp HHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTH
T ss_pred hHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhH
Confidence 234567777777543 345788888988888888887 67 578999999999999998766554332 222355
Q ss_pred HHHHHccc
Q 025758 216 RLAEKSNR 223 (248)
Q Consensus 216 ~l~~~~~g 223 (248)
.++..+.|
T Consensus 398 ~la~~t~g 405 (806)
T 1ypw_A 398 QVANETHG 405 (806)
T ss_dssp HHHHSCSS
T ss_pred HHHHhhcC
Confidence 56655544
No 84
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.51 E-value=1.2e-14 Score=122.12 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=89.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec---cCCcccccce--------eeecccceeeeCCCCcCc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID---AGSRNIDLEL--------TTLSSANHVELSPSDAGF 104 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 104 (248)
.+.|.|||||||||+++++++ +..+++|.+.++|+++... .+...+...+ ...++.+++.+.....+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG-FEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred EEEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 366999999999999999998 7899999999999876311 1111110111 011222223332221111
Q ss_pred ch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCe
Q 025758 105 QD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASC 161 (248)
Q Consensus 105 ~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~--~~~ 161 (248)
.. ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+..++..+.+.. .+.
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~ 190 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK 190 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 11 12234444432 2234445553 568999999999 8999999998887665542 346
Q ss_pred eEEEEecCCCcccHHHhhhhhe
Q 025758 162 RLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+|++||+.... ..+.+|+.+
T Consensus 191 tvi~vTHd~~ea-~~~aDri~v 211 (359)
T 3fvq_A 191 SAVFVSHDREEA-LQYADRIAV 211 (359)
T ss_dssp EEEEECCCHHHH-HHHCSEEEE
T ss_pred EEEEEeCCHHHH-HHHCCEEEE
Confidence 777887776544 467788743
No 85
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.51 E-value=1.6e-14 Score=121.68 Aligned_cols=145 Identities=14% Similarity=0.276 Sum_probs=89.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeecccceeeeCCCCcCcch-
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSANHVELSPSDAGFQD- 106 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~- 106 (248)
.+.|.||||+|||||++++++ +..+++|.+.++|.++....+.. +...+ ...++.+++.+.....+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPKY-REVGMVFQNYALYPHMTVFENIAFPLRARRISKD 108 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGG-TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH
T ss_pred EEEEEcCCCchHHHHHHHHHC-CCCCCccEEEECCEECCCCChhh-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 366999999999999999998 77899999999997654211111 10111 00111222222111111111
Q ss_pred --hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEE
Q 025758 107 --RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLI 164 (248)
Q Consensus 107 --~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~I 164 (248)
...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+..+.+.+.+... +..+|
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (359)
T 2yyz_A 109 EVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188 (359)
T ss_dssp HTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 11233444332 2233445553 568999999999 89999999999999987643 46788
Q ss_pred EEecCCCcccHHHhhhhhe
Q 025758 165 LCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 165 l~t~~~~~~~~~l~sR~~~ 183 (248)
++||+...+ ..+.+|+.+
T Consensus 189 ~vTHd~~~~-~~~adri~v 206 (359)
T 2yyz_A 189 YVTHDQAEA-MTMASRIAV 206 (359)
T ss_dssp EEESCHHHH-HHHCSEEEE
T ss_pred EEcCCHHHH-HHhCCEEEE
Confidence 888775544 367777643
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.49 E-value=1e-15 Score=141.90 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=107.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 6 ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
.....+|+++.|.+.+++.+...+.- ....+++|+||||||||++|+++|+.+.. +.+.+++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~---~~i~v~~~~ 546 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISIKGPE 546 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC---CCCCCCCSS
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC---CEEEEechH
Confidence 44567899999999999999887642 12234999999999999999999997632 122222111
Q ss_pred eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------
Q 025758 73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------- 143 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------- 143 (248)
+. ....+. ....+...+...... .+.|++|||+|.+.
T Consensus 547 l~------------------------~~~~g~-~~~~i~~~f~~a~~~---------~p~vl~iDEid~l~~~r~~~~~~ 592 (806)
T 1ypw_A 547 LL------------------------TMWFGE-SEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp ST------------------------TCCTTT-SSHHHHHHHHHHHHH---------CSBCCCCSSHHHHCCTTTTCCSH
T ss_pred hh------------------------hhhcCc-cHHHHHHHHHHHHhc---------CCeEEEEEChhhhhhhccCCCCC
Confidence 00 000111 112344455544432 34699999998752
Q ss_pred -----HHHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHH
Q 025758 144 -----REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKK 204 (248)
Q Consensus 144 -----~~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~ 204 (248)
....+.|+..++.. ..+..+|.+||.+..+.+++.+ |+ ..+.|+.|+.++...+++..+.+
T Consensus 593 ~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp HHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred cchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 11234455555433 2345788889999999999998 99 58999999999999999877654
No 87
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.49 E-value=1.7e-14 Score=121.94 Aligned_cols=134 Identities=15% Similarity=0.241 Sum_probs=88.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHH------
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV------ 109 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 109 (248)
.+.|.||||||||||++++++ +..+++|.+.++|.++....+... .+++.+.+....+..+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~~~~~~~~~r------------~ig~VfQ~~~l~p~ltV~eni~ 97 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAER------------GVGMVFQSYALYPHLSVAENMS 97 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGGGS------------CEEEECTTCCCCTTSCHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc-CCCCCCeEEEECCEECCCCCHHHC------------CEEEEecCCcCCCCCCHHHHHH
Confidence 366999999999999999998 789999999999986642222111 1222222222221111
Q ss_pred ----------------HHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHH
Q 025758 110 ----------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (248)
Q Consensus 110 ----------------~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le 155 (248)
+.+.++.+ ...++..+|+ ..+|+++++||| ..||+..+..+++.|.
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~ 177 (381)
T 3rlf_A 98 FGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177 (381)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 22222221 1223444553 338999999999 8999999999999998
Q ss_pred HhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 156 KYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 156 ~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+... +..+|++||+...+. .+.+|+.+
T Consensus 178 ~l~~~~g~tii~vTHd~~ea~-~~aDri~v 206 (381)
T 3rlf_A 178 RLHKRLGRTMIYVTHDQVEAM-TLADKIVV 206 (381)
T ss_dssp HHHHHHCCEEEEECSCHHHHH-HHCSEEEE
T ss_pred HHHHhCCCEEEEEECCHHHHH-HhCCEEEE
Confidence 8743 467788877765544 67788743
No 88
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.49 E-value=3.5e-14 Score=119.67 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=86.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh---------
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 107 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. ..+++.+.+....+.
T Consensus 32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~------------r~ig~v~Q~~~l~~~ltv~eni~~ 98 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPKD------------RNVGLVFQNWALYPHMTVYKNIAF 98 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGG------------TTEEEECTTCCCCTTSCHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCCHhH------------CcEEEEecCcccCCCCCHHHHHHH
Confidence 66999999999999999998 77899999999997654211111 112222222211111
Q ss_pred -------------HHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758 108 -------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (248)
Q Consensus 108 -------------~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~ 156 (248)
..+.+.++.+. ...+..+|+ ..+|+++++||| ..||+..+..+.+.|.+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 99 PLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 11222232221 122334442 568999999999 89999999999999987
Q ss_pred hcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758 157 YSA--SCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 157 ~~~--~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
... +..+|++||+...+ ..+.+|+.
T Consensus 179 l~~~~g~tvi~vTHd~~~a-~~~adri~ 205 (362)
T 2it1_A 179 LQKELGITTVYVTHDQAEA-LAMADRIA 205 (362)
T ss_dssp HHHHHTCEEEEEESCHHHH-HHHCSEEE
T ss_pred HHHhCCCEEEEECCCHHHH-HHhCCEEE
Confidence 743 46788888876544 36677764
No 89
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.49 E-value=5.2e-14 Score=119.21 Aligned_cols=133 Identities=16% Similarity=0.265 Sum_probs=87.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee------ccCCcccccceeeecccceeeeCCCCcCcchh---
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI------DAGSRNIDLELTTLSSANHVELSPSDAGFQDR--- 107 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 107 (248)
+.|.||||+|||||++++++ +..+.+|.+.++|.++.. ..+.. ..+++.+.+....+.
T Consensus 32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~~~~~~~~------------r~ig~v~Q~~~l~~~ltv 98 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGIFVPPKD------------RDIAMVFQSYALYPHMTV 98 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEEEGGGTEECCGGG------------SSEEEECSCCCCCTTSCH
T ss_pred EEEECCCCcHHHHHHHHHHc-CCCCCccEEEECCEECccccccccCCHhH------------CCEEEEeCCCccCCCCCH
Confidence 66999999999999999998 778999999999987653 11111 112222222211111
Q ss_pred -------------------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHH
Q 025758 108 -------------------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSL 150 (248)
Q Consensus 108 -------------------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~l 150 (248)
..+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+..+
T Consensus 99 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 178 (372)
T 1g29_1 99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178 (372)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 1223333322 1223345553 448999999999 89999999999
Q ss_pred HHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 151 RRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 151 l~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+.|.+... +..+|++||+...+ ..+.+|+.+
T Consensus 179 ~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~v 212 (372)
T 1g29_1 179 RAELKKLQRQLGVTTIYVTHDQVEA-MTMGDRIAV 212 (372)
T ss_dssp HHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEE
T ss_pred HHHHHHHHHhcCCEEEEECCCHHHH-HHhCCEEEE
Confidence 999987643 46788888875543 467777643
No 90
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.49 E-value=1.7e-14 Score=115.36 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=86.9
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--e------eecccceeeeCCCCcCcc-
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--T------TLSSANHVELSPSDAGFQ- 105 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~- 105 (248)
..+.|.||||+||||+++++++ +..+.+|.+.++|.++...... .....+ + ..++.+++.+.....+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~-~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 102 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITPLPPE-RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVE 102 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCTT-TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCchh-hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCch
Confidence 4477999999999999999998 7788999999998765311110 000000 0 001111121211111100
Q ss_pred hhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758 106 DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL 165 (248)
Q Consensus 106 ~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il 165 (248)
....+.+.++.+. ...+..+|+ ..+|+++++||| ..||+..+..+.+++.+... +..+|+
T Consensus 103 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~ 182 (240)
T 2onk_A 103 RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182 (240)
T ss_dssp HHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1112233333221 112223442 568999999999 89999999999999988743 467788
Q ss_pred EecCCCcccHHHhhhhhee
Q 025758 166 CCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 166 ~t~~~~~~~~~l~sR~~~i 184 (248)
+||+... ...+.+|+.++
T Consensus 183 vtHd~~~-~~~~~d~i~~l 200 (240)
T 2onk_A 183 VTHDLIE-AAMLADEVAVM 200 (240)
T ss_dssp EESCHHH-HHHHCSEEEEE
T ss_pred EeCCHHH-HHHhCCEEEEE
Confidence 8777544 34666776443
No 91
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.49 E-value=8.9e-14 Score=110.90 Aligned_cols=146 Identities=15% Similarity=0.234 Sum_probs=86.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----cccccee--------eecccceeeeC--CC
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----NIDLELT--------TLSSANHVELS--PS 100 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~~~~--~~ 100 (248)
.+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. .....+. ..++.+++.+. ..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 367999999999999999998 78899999999986543111100 0000000 00111111110 00
Q ss_pred -CcCcchh---HHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh
Q 025758 101 -DAGFQDR---YVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 101 -~~~~~~~---~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~ 157 (248)
....... ..+.+.++.+. ...+..+|+ ..+|+++|+||| ..||+.....+++++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0011111 12223333221 122334552 568999999999 899999999999999887
Q ss_pred cC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758 158 SA--SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 158 ~~--~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.. +..+|++||+.. +. .+.+|+.++
T Consensus 192 ~~~~g~tvi~vtHd~~-~~-~~~d~i~~l 218 (235)
T 3tif_A 192 NEEDGKTVVVVTHDIN-VA-RFGERIIYL 218 (235)
T ss_dssp HHHHCCEEEEECSCHH-HH-TTSSEEEEE
T ss_pred HHHcCCEEEEEcCCHH-HH-HhCCEEEEE
Confidence 43 567888888875 43 567776443
No 92
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.48 E-value=1e-13 Score=102.07 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=81.6
Q ss_pred cccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecc
Q 025758 14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS 91 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (248)
+++|+....+.+.+.+.. ....+++|+||+|||||++|++++... . ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~-~---~~-------------------------- 54 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG-T---PW-------------------------- 54 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT-S---CE--------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC-C---Ce--------------------------
Confidence 578988888877776643 334569999999999999999998732 1 11
Q ss_pred cceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-CCeeEEEEecCC
Q 025758 92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCRLILCCNSS 170 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-~~~~~Il~t~~~ 170 (248)
+.+.+.... ... ....+. . . ...+++|||++.+++..+..|++.+++.. .+..+|++||..
T Consensus 55 ---~~~~~~~~~--~~~-~~~~~~---~-a--------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 55 ---VSPARVEYL--IDM-PMELLQ---K-A--------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp ---ECCSSTTHH--HHC-HHHHHH---H-T--------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred ---EEechhhCC--hHh-hhhHHH---h-C--------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 111111100 000 111111 1 1 23489999999999999999999999763 457889988865
Q ss_pred C-c----ccHHHhhhh--heeeecCC
Q 025758 171 S-K----VTEAIRSRC--LNIRINSP 189 (248)
Q Consensus 171 ~-~----~~~~l~sR~--~~i~~~~~ 189 (248)
. . +.+.+..|+ ..|.+|++
T Consensus 117 ~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 117 AGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp TTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred HHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 3 2 445677776 35666654
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.48 E-value=1.2e-13 Score=102.34 Aligned_cols=122 Identities=19% Similarity=0.345 Sum_probs=76.6
Q ss_pred CCCCcccccc--cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758 8 RPKTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE 85 (248)
Q Consensus 8 ~p~~~~~lig--~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (248)
...++++++. +..+...+..+ ....++|+||+|+||||+++++++.+.......+.+++
T Consensus 12 ~~~~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~--------------- 72 (149)
T 2kjq_A 12 DYPSFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA--------------- 72 (149)
T ss_dssp CCCCCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET---------------
T ss_pred CccchhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH---------------
Confidence 3445566543 44555555555 33458999999999999999999966321100111111
Q ss_pred eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC-ee-E
Q 025758 86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS-CR-L 163 (248)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~-~~-~ 163 (248)
...... .+ ..++++++|||++.++...+..++++++..... .. +
T Consensus 73 --------------~~~~~~----------~~----------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~i 118 (149)
T 2kjq_A 73 --------------ASMPLT----------DA----------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFL 118 (149)
T ss_dssp --------------TTSCCC----------GG----------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEE
T ss_pred --------------HHhhHH----------HH----------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEE
Confidence 110000 00 125679999999988877788999999875433 44 7
Q ss_pred EEEecCCCc---ccHHHhhhhh
Q 025758 164 ILCCNSSSK---VTEAIRSRCL 182 (248)
Q Consensus 164 Il~t~~~~~---~~~~l~sR~~ 182 (248)
|++++.+.. ..++++||+.
T Consensus 119 iits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 119 LLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp EEEESSCTTTSSCCHHHHHHGG
T ss_pred EEECCCCHHHccccHHHHHHHh
Confidence 778875542 2289999984
No 94
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.46 E-value=8.6e-14 Score=116.92 Aligned_cols=144 Identities=17% Similarity=0.263 Sum_probs=85.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------ecccceeeeCCCCcCcch--
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSANHVELSPSDAGFQD-- 106 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-- 106 (248)
+.|.||||+|||||++++++ +..+.+|.+.++|..+....+.. +...+.. .++.+++.+.....+...
T Consensus 44 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~-r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTDLPPQK-RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGGG-SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECCcCChhh-CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 66999999999999999998 77899999999997654211111 1010000 011111111000001010
Q ss_pred -hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758 107 -RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL 165 (248)
Q Consensus 107 -~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il 165 (248)
...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+..+.+.|.+... +..+|+
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11222333322 1223334553 568999999999 89999999999999987643 456777
Q ss_pred EecCCCcccHHHhhhhhe
Q 025758 166 CCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 166 ~t~~~~~~~~~l~sR~~~ 183 (248)
+|++...+ ..+.+|+.+
T Consensus 202 vTHd~~~a-~~~adri~v 218 (355)
T 1z47_A 202 VTHDQEEA-LEVADRVLV 218 (355)
T ss_dssp ECSCHHHH-HHHCSEEEE
T ss_pred ECCCHHHH-HHhCCEEEE
Confidence 77775443 467777643
No 95
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.46 E-value=2.6e-14 Score=115.33 Aligned_cols=134 Identities=17% Similarity=0.224 Sum_probs=83.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh---------
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 107 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++....... ...+++.+........
T Consensus 44 ~~l~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~~~~~~~-----------~~~i~~v~q~~~l~~~ltv~enl~~ 111 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNVVEEPHEV-----------RKLISYLPEEAGAYRNMQGIEYLRF 111 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTCHHHH-----------HTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCccHHHH-----------hhcEEEEcCCCCCCCCCcHHHHHHH
Confidence 66999999999999999998 77889999999886543100000 0012222221111111
Q ss_pred -------------HHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758 108 -------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (248)
Q Consensus 108 -------------~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~ 156 (248)
..+.+.++.+. ...+..+|+ ..+|+++++||| ..||+..+..+.+++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 11223333221 122234442 568999999999 89999999999999988
Q ss_pred hcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 157 YSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 157 ~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
... +..+|++|++... ...+.+|+..
T Consensus 192 l~~~g~tiiivtHd~~~-~~~~~d~v~~ 218 (256)
T 1vpl_A 192 ASQEGLTILVSSHNMLE-VEFLCDRIAL 218 (256)
T ss_dssp HHHTTCEEEEEECCHHH-HTTTCSEEEE
T ss_pred HHhCCCEEEEEcCCHHH-HHHHCCEEEE
Confidence 743 4567777776543 3355666643
No 96
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.46 E-value=5.6e-14 Score=118.85 Aligned_cols=145 Identities=14% Similarity=0.226 Sum_probs=91.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeecccceeeeCCCCcCcch-
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSANHVELSPSDAGFQD- 106 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~- 106 (248)
.+.|.||||+|||||++++++ +..+.+|.+.++|..+....+.. +...+ ...++.+++.+.....+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 116 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKD-RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 116 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGG-GTEEEEEC------CCCHHHHHHTTCC--CCCHH
T ss_pred EEEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCCCChhh-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 366999999999999999998 78899999999997654211111 11111 11122223333221112111
Q ss_pred --hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEE
Q 025758 107 --RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLI 164 (248)
Q Consensus 107 --~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~I 164 (248)
...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+..+.+.|.+... +..+|
T Consensus 117 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 196 (372)
T 1v43_A 117 EIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196 (372)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 12234444432 2334556664 458999999999 89999999999999987743 46788
Q ss_pred EEecCCCcccHHHhhhhhe
Q 025758 165 LCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 165 l~t~~~~~~~~~l~sR~~~ 183 (248)
++||+.... ..+.+|+.+
T Consensus 197 ~vTHd~~~a-~~~adri~v 214 (372)
T 1v43_A 197 YVTHDQVEA-MTMGDRIAV 214 (372)
T ss_dssp EEESCHHHH-HHHCSEEEE
T ss_pred EEeCCHHHH-HHhCCEEEE
Confidence 888876544 367777643
No 97
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.46 E-value=5.9e-14 Score=118.01 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=88.5
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh---------
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------- 107 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 107 (248)
+.|.||||+|||||++++++ +..+.+|.+.++|.++....+.... .....+++.+........
T Consensus 57 ~~IiGpnGaGKSTLlr~i~G-L~~p~~G~I~i~G~~i~~~~~~~~~-------~~r~~Ig~v~Q~~~l~~~~TV~env~~ 128 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELTTLSESELT-------KARRQIGMIFQHFNLLSSRTVFGNVAL 128 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECSSCCHHHHH-------HHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHH-------HHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence 56999999999999999998 7899999999999766421110000 000112222222111111
Q ss_pred -------------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758 108 -------------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (248)
Q Consensus 108 -------------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~ 156 (248)
..+.+.++.+ ...++..+|+ ..+|+++|+||| ..||+..+..+++++.+
T Consensus 129 ~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 129 PLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208 (366)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 1223333332 2234445553 568999999999 89999999999999988
Q ss_pred hcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 157 YSA--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 157 ~~~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
... +..+|++||+.. ....+.+|+.+
T Consensus 209 l~~~~g~Tii~vTHdl~-~~~~~aDrv~v 236 (366)
T 3tui_C 209 INRRLGLTILLITHEMD-VVKRICDCVAV 236 (366)
T ss_dssp HHHHSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 743 467788877754 44577777743
No 98
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.45 E-value=5e-14 Score=118.21 Aligned_cols=134 Identities=13% Similarity=0.255 Sum_probs=86.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh--------
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR-------- 107 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 107 (248)
.+.|.||||+|||||++++++ +..+.+|.+.++|..+....+. . ..+++.+.+....+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~-~-----------r~ig~v~Q~~~l~~~ltv~enl~ 94 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVTDLSPE-K-----------HDIAFVYQNYSLFPHMNVKKNLE 94 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEECTTSCHH-H-----------HTCEEECTTCCCCTTSCHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCEECCCCchh-h-----------CcEEEEecCcccCCCCCHHHHHH
Confidence 366999999999999999998 7789999999999765311110 0 012222222111111
Q ss_pred -----------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 108 -----------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 108 -----------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
..+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+..+.+.|.+..
T Consensus 95 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~ 174 (348)
T 3d31_A 95 FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174 (348)
T ss_dssp HHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 2233333322 1222334442 558999999999 8999999999999998874
Q ss_pred C--CeeEEEEecCCCcccHHHhhhhhe
Q 025758 159 A--SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 159 ~--~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
. +..+|++||+.... ..+.+|+.+
T Consensus 175 ~~~g~tii~vTHd~~~~-~~~adri~v 200 (348)
T 3d31_A 175 KKNKLTVLHITHDQTEA-RIMADRIAV 200 (348)
T ss_dssp HHTTCEEEEEESCHHHH-HHHCSEEEE
T ss_pred HhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 3 46788888775544 466777643
No 99
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.45 E-value=1.8e-13 Score=110.70 Aligned_cols=145 Identities=16% Similarity=0.288 Sum_probs=84.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------ecccceeeeCC-CCcC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------LSSANHVELSP-SDAG 103 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~~~~~~-~~~~ 103 (248)
+.|.||||+|||||++++++ +..+..|.+.++|.++. ..... .....+.. .++.+++.+.. ...+
T Consensus 53 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~i~-~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~ 130 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNL-LEDFDEGEIIIDGINLK-AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK 130 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEESS-STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCcEEEECCEECC-CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence 66999999999999999998 77889999999987653 11100 00000000 01111111100 0001
Q ss_pred cch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-Ce
Q 025758 104 FQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SC 161 (248)
Q Consensus 104 ~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~ 161 (248)
... ...+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+..+..+++++.+... +.
T Consensus 131 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~ 210 (263)
T 2olj_A 131 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 210 (263)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 010 11122333322 1112234442 558999999999 89999999999999988743 45
Q ss_pred eEEEEecCCCcccHHHhhhhhee
Q 025758 162 RLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+|++|++. .....+.+|+.++
T Consensus 211 tvi~vtHd~-~~~~~~~d~v~~l 232 (263)
T 2olj_A 211 TMVVVTHEM-GFAREVGDRVLFM 232 (263)
T ss_dssp EEEEECSCH-HHHHHHCSEEEEE
T ss_pred EEEEEcCCH-HHHHHhCCEEEEE
Confidence 667776664 3445677776443
No 100
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.45 E-value=7.2e-14 Score=110.66 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=82.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcch----------
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD---------- 106 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 106 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++............ ...+++.+.......
T Consensus 33 ~~iiG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~------~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVDYTNEKELSLLR------NRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTT-SSCCSEEEEEETTEECCSSCHHHHHHHH------HHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCCCCHHHHHHHH------hCcEEEEecCcccCCCCCHHHHHHh
Confidence 66999999999999999998 7788999999988765311100000000 001222221111111
Q ss_pred ------------hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758 107 ------------RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK 156 (248)
Q Consensus 107 ------------~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~ 156 (248)
...+.+.++.+. ...+..+|+ ..+|+++++||| ..||+.....+.+++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 111222232221 112223442 568999999999 89999999999999988
Q ss_pred hcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 157 YSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 157 ~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
... +..+|++||+... . .+.+|+..+
T Consensus 186 l~~~g~tvi~vtHd~~~-~-~~~d~v~~l 212 (224)
T 2pcj_A 186 INEGGTSIVMVTHEREL-A-ELTHRTLEM 212 (224)
T ss_dssp HHHTTCEEEEECSCHHH-H-TTSSEEEEE
T ss_pred HHHCCCEEEEEcCCHHH-H-HhCCEEEEE
Confidence 743 4567777777543 3 456665443
No 101
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.44 E-value=1.2e-13 Score=111.53 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=90.7
Q ss_pred HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--c--cccce------eeecccce
Q 025758 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--N--IDLEL------TTLSSANH 94 (248)
Q Consensus 25 l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~------~~~~~~~~ 94 (248)
+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. . ..+-. ...++.++
T Consensus 26 vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 102 (257)
T 1g6h_A 26 VSISVNKGD--VTLIIGPNGSGKSTLINVITG-FLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN 102 (257)
T ss_dssp ECCEEETTC--EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred eEEEEeCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHH
Confidence 333344443 366999999999999999998 77889999999987553110000 0 00000 01112222
Q ss_pred eeeCCCC--cC-----------cc---hhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758 95 VELSPSD--AG-----------FQ---DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-D 140 (248)
Q Consensus 95 ~~~~~~~--~~-----------~~---~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d 140 (248)
+.+.... .+ .. ....+.+.++.+. ...+..+|+ ..+|+++++||| .
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts 182 (257)
T 1g6h_A 103 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 182 (257)
T ss_dssp HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTT
T ss_pred HHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 2221111 01 01 1122333343321 112224442 458999999999 8
Q ss_pred CCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758 141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 141 ~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.||+.....+.+++.+... +..+|++||+...+ ..+.+|+.+
T Consensus 183 ~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~~d~v~~ 225 (257)
T 1g6h_A 183 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV-LNYIDHLYV 225 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT-GGGCSEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH-HHhCCEEEE
Confidence 9999999999999988744 45677777776554 466777643
No 102
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.44 E-value=6.8e-14 Score=113.50 Aligned_cols=158 Identities=15% Similarity=0.202 Sum_probs=89.7
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--------eeecccc
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--------TTLSSAN 93 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~ 93 (248)
+.+...+..|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. .....+ ...++.+
T Consensus 28 ~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 28 NDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTG-YLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEETTC--EEEEECCTTSCHHHHHHHHTS-SSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred EeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 33333444443 356999999999999999998 77899999999997653111100 000000 0001111
Q ss_pred eeeeCCCCc-CcchhHHHHHHHHHHH-----hcCCCcCCC------------CC------CeeEEEEeCC-CCCCHHHHH
Q 025758 94 HVELSPSDA-GFQDRYVVQEVIKEMA-----KNRPIDTKG------------KR------GFKVLVLNEV-DKLSREAQH 148 (248)
Q Consensus 94 ~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~------~~~viiiDE~-d~l~~~~~~ 148 (248)
++.+..... .......+.+.++.+. ...+..+|+ .. +|+++|+||| ..||+..+.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 105 VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence 111111000 0111122333333321 112223332 33 8999999999 899999999
Q ss_pred HHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhhee
Q 025758 149 SLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 149 ~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+++++.+.... ..+|++||+.. ....+.+|+.++
T Consensus 185 ~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl 221 (266)
T 4g1u_C 185 HTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLL 221 (266)
T ss_dssp HHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 999999887432 46777766654 444677887443
No 103
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.43 E-value=1.7e-13 Score=109.96 Aligned_cols=141 Identities=21% Similarity=0.275 Sum_probs=84.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-cccccee-------eecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELT-------TLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++....... .....+. ..++.+++.+... . ....
T Consensus 38 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~--~-~~~~ 113 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--G-MSVE 113 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT--T-CCHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCC--C-CCHH
Confidence 66999999999999999998 77889999999986543110000 0000000 0011122222111 0 1111
Q ss_pred HHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.+.+.++. +.... ...+|+ ..+|+++++||| ..||+.....+.+++.+...
T Consensus 114 ~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 193 (247)
T 2ff7_A 114 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193 (247)
T ss_dssp HHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC
Confidence 22222221 22222 134442 558999999999 89999999999999988755
Q ss_pred CeeEEEEecCCCcccHHHhhhhhe
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+..+|++|++...+ . ..+|+.+
T Consensus 194 g~tviivtH~~~~~-~-~~d~v~~ 215 (247)
T 2ff7_A 194 GRTVIIIAHRLSTV-K-NADRIIV 215 (247)
T ss_dssp TSEEEEECSSGGGG-T-TSSEEEE
T ss_pred CCEEEEEeCCHHHH-H-hCCEEEE
Confidence 56788888876644 2 3666643
No 104
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.43 E-value=1.2e-13 Score=110.50 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=87.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccce--e------eecccceeeeCC-CCcCcc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLEL--T------TLSSANHVELSP-SDAGFQ 105 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~------~~~~~~~~~~~~-~~~~~~ 105 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. .....+ + ..++.+++.+.. ......
T Consensus 35 ~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 113 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE 113 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHH
Confidence 66999999999999999998 77889999999987653111100 000000 0 011112222211 000001
Q ss_pred -hhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCeeEE
Q 025758 106 -DRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLI 164 (248)
Q Consensus 106 -~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~-~~~~~I 164 (248)
....+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+++++.+.. .+..+|
T Consensus 114 ~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi 193 (240)
T 1ji0_A 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193 (240)
T ss_dssp HHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 112233333322 1223334553 568999999999 8999999999999998875 345677
Q ss_pred EEecCCCcccHHHhhhhhee
Q 025758 165 LCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 165 l~t~~~~~~~~~l~sR~~~i 184 (248)
++||+... ...+.+|+..+
T Consensus 194 ~vtHd~~~-~~~~~d~v~~l 212 (240)
T 1ji0_A 194 LVEQNALG-ALKVAHYGYVL 212 (240)
T ss_dssp EEESCHHH-HHHHCSEEEEE
T ss_pred EEecCHHH-HHHhCCEEEEE
Confidence 88777543 34666776443
No 105
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.43 E-value=2.6e-13 Score=110.51 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=90.2
Q ss_pred HHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---Ccccccce--e-------eecccc
Q 025758 26 KKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLEL--T-------TLSSAN 93 (248)
Q Consensus 26 ~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~-------~~~~~~ 93 (248)
...+.+|. .+.|.||||+||||+++++++ +..+.+|.+.++|.++..... .......+ + ..++.+
T Consensus 28 sl~i~~Ge--~~~iiGpnGsGKSTLl~~l~G-l~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e 104 (275)
T 3gfo_A 28 NMNIKRGE--VTAILGGNGVGKSTLFQNFNG-ILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ 104 (275)
T ss_dssp EEEEETTS--EEEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHH
T ss_pred EEEEcCCC--EEEEECCCCCCHHHHHHHHHc-CCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHH
Confidence 33344443 366999999999999999998 778999999999976521000 00000000 0 001111
Q ss_pred eeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758 94 HVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR 152 (248)
Q Consensus 94 ~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~ 152 (248)
++.+.....+.... ..+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+..+..+++
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~ 184 (275)
T 3gfo_A 105 DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184 (275)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 11111111111111 1122233221 1122334442 558999999999 8999999999999
Q ss_pred HHHHhc-C-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 153 TMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 153 ~le~~~-~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
++.+.. . +..+|++|++...+. .+.+|+.++
T Consensus 185 ~l~~l~~~~g~tvi~vtHdl~~~~-~~~drv~~l 217 (275)
T 3gfo_A 185 LLVEMQKELGITIIIATHDIDIVP-LYCDNVFVM 217 (275)
T ss_dssp HHHHHHHHHCCEEEEEESCCSSGG-GGCSEEEEE
T ss_pred HHHHHHhhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 998875 3 467788888766554 677887443
No 106
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.42 E-value=5.9e-14 Score=118.09 Aligned_cols=145 Identities=17% Similarity=0.297 Sum_probs=89.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec----cCCcccccceee--------ecccceeeeCCCCcCc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID----AGSRNIDLELTT--------LSSANHVELSPSDAGF 104 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 104 (248)
+.|.||||+|||||++++++ +..+++|.+.++|.++... .+...+...+.. .++.+++.+.....+.
T Consensus 34 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 112 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 66999999999999999998 7889999999999876531 111111111100 1111222221111111
Q ss_pred ch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--Ce
Q 025758 105 QD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SC 161 (248)
Q Consensus 105 ~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~ 161 (248)
.. ...+.+.++.+ ....+..+|+ ..+|+++++||| ..||+..+..+.+.|.+... +.
T Consensus 113 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 192 (353)
T 1oxx_K 113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192 (353)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 11 11233333332 1223445553 568999999999 89999999999999987643 46
Q ss_pred eEEEEecCCCcccHHHhhhhhe
Q 025758 162 RLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+|++||+...+ ..+.+|+.+
T Consensus 193 tvi~vTHd~~~~-~~~adri~v 213 (353)
T 1oxx_K 193 TLLVVSHDPADI-FAIADRVGV 213 (353)
T ss_dssp EEEEEESCHHHH-HHHCSEEEE
T ss_pred EEEEEeCCHHHH-HHhCCEEEE
Confidence 788888876544 466777643
No 107
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.42 E-value=2.5e-13 Score=106.63 Aligned_cols=140 Identities=12% Similarity=0.176 Sum_probs=82.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeecccceeeeCCCCcC-cchh
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSANHVELSPSDAG-FQDR 107 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~ 107 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++. . ......+ ...++.+++.+.....+ ....
T Consensus 38 ~~iiG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~---~-~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 112 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPIT---K-VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK 112 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGG---G-GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEhh---h-hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHH
Confidence 56999999999999999998 77889999999886542 0 0000000 00011111111000000 0011
Q ss_pred HHHHHHHHHHH----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecC
Q 025758 108 YVVQEVIKEMA----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNS 169 (248)
Q Consensus 108 ~~~~~~~~~~~----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~ 169 (248)
..+.+.++.+. ...+..+|+ ..+|+++++||| ..||+.....+.+.+.+... +..+|++|++
T Consensus 113 ~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 113 NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp HHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 22333343332 111223332 558999999999 89999999999999987643 4567778877
Q ss_pred CCcccHHHhhhhh
Q 025758 170 SSKVTEAIRSRCL 182 (248)
Q Consensus 170 ~~~~~~~l~sR~~ 182 (248)
...+ ..+.+|+.
T Consensus 193 ~~~~-~~~~d~v~ 204 (214)
T 1sgw_A 193 ELSY-CDVNENLH 204 (214)
T ss_dssp CCTT-SSEEEEGG
T ss_pred HHHH-HHhCCEEE
Confidence 6543 34555554
No 108
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.41 E-value=1.8e-13 Score=110.89 Aligned_cols=146 Identities=16% Similarity=0.273 Sum_probs=86.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee----------ccCC----cccccce--e------eecccce
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI----------DAGS----RNIDLEL--T------TLSSANH 94 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~~--~------~~~~~~~ 94 (248)
+.|.||||+|||||++++++ +..+.+|.+.++|.++.. ..+. ......+ + ..++.++
T Consensus 35 ~~liG~nGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~ 113 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLEN 113 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHH
Confidence 66999999999999999998 778899999999876531 0000 0000000 0 0011111
Q ss_pred eeeCC-CCcCcch---hHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758 95 VELSP-SDAGFQD---RYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR 151 (248)
Q Consensus 95 ~~~~~-~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll 151 (248)
+.+.. ...+... ...+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+..+..++
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~ 193 (262)
T 1b0u_A 114 VMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 193 (262)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 11100 0001110 11233333322 3334445553 458999999999 899999999999
Q ss_pred HHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 152 RTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 152 ~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+++.+... +..+|++||+.. ....+.+|+.++
T Consensus 194 ~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (262)
T 1b0u_A 194 RIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 226 (262)
T ss_dssp HHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99988743 456777777644 444677777443
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.41 E-value=2.3e-12 Score=98.28 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=53.0
Q ss_pred CeeEEEEeC--C-CCCCHHHHHHHHHHHHHhcCCeeEEEEec--CCCcccHHHhhh--hheeeecCCCHHHHHHHHH
Q 025758 130 GFKVLVLNE--V-DKLSREAQHSLRRTMEKYSASCRLILCCN--SSSKVTEAIRSR--CLNIRINSPTEEQIVKVLE 199 (248)
Q Consensus 130 ~~~viiiDE--~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~--~~~~~~~~l~sR--~~~i~~~~~~~~~~~~il~ 199 (248)
+++++++|| + ..+++.....+.+.+++ ....+|+++| +...+.+.+++| +.++.+...+.+++...+.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 567999999 6 67899999999999986 2344777774 566788899999 7888888877666655554
No 110
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.41 E-value=9.7e-12 Score=104.25 Aligned_cols=219 Identities=14% Similarity=0.186 Sum_probs=124.4
Q ss_pred CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee---cc
Q 025758 1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI---DA 77 (248)
Q Consensus 1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~---~~ 77 (248)
|+|.-. .|.....++|.+..++.|..++..+ +.++++||+|+|||++++.++... +.+.+++..... ..
T Consensus 1 ~~F~~~-~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 1 MLFDLR-PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHI 72 (350)
T ss_dssp CCSCCS-CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCB
T ss_pred CCCCCC-CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCC
Confidence 444432 4456678999999999999998765 569999999999999999999864 122222211000 00
Q ss_pred CCcccccce-eeecc----cce--eeeCCCCcCcc-hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758 78 GSRNIDLEL-TTLSS----ANH--VELSPSDAGFQ-DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----- 144 (248)
Q Consensus 78 ~~~~~~~~~-~~~~~----~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----- 144 (248)
+.......+ ..+.. ... +.+........ ......+.+..+..... ..++.+|+|||++.++.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~vlvlDe~~~~~~~~~~~ 147 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE-----ELGEFIVAFDEAQYLRFYGSRG 147 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH-----HHSCEEEEEETGGGGGGBTTTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh-----ccCCEEEEEeCHHHHhccCccc
Confidence 000000000 00000 000 00000000000 00112233333322110 11367999999988764
Q ss_pred --HHHHHHHHHHHHhcCCeeEEEEecCCCcc---------cHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 025758 145 --EAQHSLRRTMEKYSASCRLILCCNSSSKV---------TEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212 (248)
Q Consensus 145 --~~~~~ll~~le~~~~~~~~Il~t~~~~~~---------~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~ 212 (248)
.....|..+++.. .+..+|++++....+ ...+..|. ..+.+.+++.++..+++...+...+..++++
T Consensus 148 ~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~ 226 (350)
T 2qen_A 148 GKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPEN 226 (350)
T ss_dssp THHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHH
T ss_pred hhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 3334444444442 456777776543211 11233344 4899999999999999998887778888999
Q ss_pred HHHHHHHHccccHHHHHHHHH
Q 025758 213 FATRLAEKSNRSLRRAILSFE 233 (248)
Q Consensus 213 ~~~~l~~~~~g~~r~~~~~l~ 233 (248)
.+..+...++|++..+..+..
T Consensus 227 ~~~~i~~~tgG~P~~l~~~~~ 247 (350)
T 2qen_A 227 EIEEAVELLDGIPGWLVVFGV 247 (350)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999876654443
No 111
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.40 E-value=6.3e-13 Score=107.91 Aligned_cols=146 Identities=21% Similarity=0.224 Sum_probs=88.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec-----cCCcccc--cceeeecccceeeeCCCCc-C-cchh
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID-----AGSRNID--LELTTLSSANHVELSPSDA-G-FQDR 107 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~-~-~~~~ 107 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++... .+..... ..+...++.+++.+..... . ....
T Consensus 36 ~~liG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 114 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV 114 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSH
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHH
Confidence 66999999999999999998 7788999999988654211 0000000 0001112222222221110 0 0111
Q ss_pred HHHHHHHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCeeEEEE
Q 025758 108 YVVQEVIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILC 166 (248)
Q Consensus 108 ~~~~~~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~-~~~~~Il~ 166 (248)
..+.+.++.+ ....+..+|+ ..+|+++++||| ..||+.....+++++.+.. .+..+|++
T Consensus 115 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~v 194 (266)
T 2yz2_A 115 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 194 (266)
T ss_dssp HHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 2233444332 2233445553 568999999999 8999999999999998874 34567777
Q ss_pred ecCCCcccHHHhhhhhee
Q 025758 167 CNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 167 t~~~~~~~~~l~sR~~~i 184 (248)
||+...+ ..+.+|+..+
T Consensus 195 tHd~~~~-~~~~d~v~~l 211 (266)
T 2yz2_A 195 SHDIETV-INHVDRVVVL 211 (266)
T ss_dssp CSCCTTT-GGGCSEEEEE
T ss_pred eCCHHHH-HHhCCEEEEE
Confidence 7776543 4566776443
No 112
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.39 E-value=3e-13 Score=110.04 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=83.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeecccceeeeCCCCcCc-ch
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSANHVELSPSDAGF-QD 106 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~-~~ 106 (248)
.+.|.||||+|||||++++++ +..+.+|.+.++|.++....... ...+.+ ...++.+++.+....... ..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN-LYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHH
Confidence 367999999999999999998 77889999999987653111000 000000 001122222221111110 00
Q ss_pred hH------HHHHHHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-
Q 025758 107 RY------VVQEVIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA- 159 (248)
Q Consensus 107 ~~------~~~~~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~- 159 (248)
.. .+.+.++.+ ....+..+|+ ..+|+++|+||| ..||+.....+.++|.+...
T Consensus 126 ~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~ 205 (271)
T 2ixe_A 126 ITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205 (271)
T ss_dssp HHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh
Confidence 00 011112211 0112224442 558999999999 89999999999999998753
Q ss_pred -CeeEEEEecCCCcccHHHhhhhhe
Q 025758 160 -SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 160 -~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+..+|++|++...+. ..+|+.+
T Consensus 206 ~g~tviivtHd~~~~~--~~d~v~~ 228 (271)
T 2ixe_A 206 ASRTVLLITQQLSLAE--RAHHILF 228 (271)
T ss_dssp TTSEEEEECSCHHHHT--TCSEEEE
T ss_pred cCCEEEEEeCCHHHHH--hCCEEEE
Confidence 567888888765432 2556543
No 113
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.39 E-value=3.7e-11 Score=101.89 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=122.3
Q ss_pred ccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758 13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS 90 (248)
Q Consensus 13 ~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (248)
.+++|+......+...+.. .....+++.|++|+||+++|+++.... .....-+.+++..+. ....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s-~r~~~fv~vnc~~~~----~~~~-------- 195 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS-GRKGAFVDLNCASIP----QELA-------- 195 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH-CCCSCEEEEESSSSC----TTTH--------
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc-cccCCcEEEEcccCC----hHHH--------
Confidence 4567766665555444321 222348999999999999999999743 332223333221110 0000
Q ss_pred ccceeeeCCCC-cCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------
Q 025758 91 SANHVELSPSD-AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------- 158 (248)
Q Consensus 91 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----------- 158 (248)
....++..... .+.... ....+. ..+...++|||++.|++..|..|++.+++..
T Consensus 196 ~~~lfg~~~g~~tga~~~--~~g~~~------------~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 196 ESELFGHEKGAFTGALTR--KKGKLE------------LADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp HHHHHEECSCSSSSCCCC--EECHHH------------HTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEE
T ss_pred HHHhcCccccccCCcccc--cCChHh------------hcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCccee
Confidence 00000000000 000000 000000 1133479999999999999999999998742
Q ss_pred CCeeEEEEecCCC-------cccHHHhhhhh--eeeecCCCH--HHHHHHHHHHHHH----cC---CCCCHHHHHHHHHH
Q 025758 159 ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAKK----EG---LQLPSGFATRLAEK 220 (248)
Q Consensus 159 ~~~~~Il~t~~~~-------~~~~~l~sR~~--~i~~~~~~~--~~~~~il~~~~~~----~~---~~~~~~~~~~l~~~ 220 (248)
.+.++|.+||... .+-++|..|+. .|.+||+.. +++..++...+.+ .+ ..+++++++.+...
T Consensus 262 ~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 262 VDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 2356888888663 35567888884 566888876 6666665555443 22 45889999999987
Q ss_pred c-cccHHHHHHHHHHHhhhcc
Q 025758 221 S-NRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 221 ~-~g~~r~~~~~l~~~~~~~~ 240 (248)
. +||+|++.|.++.++..+.
T Consensus 342 ~wpGNvreL~n~i~~~~~~~~ 362 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVILCE 362 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHHHhCC
Confidence 6 9999999999999987654
No 114
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.38 E-value=1e-13 Score=111.39 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=82.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--------eeecccceeeeCCCCcCcch
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--------TTLSSANHVELSPSDAGFQD 106 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 106 (248)
.+.|.||||+||||+++++++ +..+. |.+.++|.++....... .....+ ...++.+++.+... ... .
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G-l~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~-~ 103 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG-MTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-DKT-R 103 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT-SSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-STT-C
T ss_pred EEEEECCCCCcHHHHHHHHhC-CCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc-cCC-c
Confidence 367999999999999999998 66788 99999886543100000 000000 00111111211110 000 1
Q ss_pred hHHHHHHHHHHH-----hcCCCcCCC------------CCCee-------EEEEeCC-CCCCHHHHHHHHHHHHHhcC-C
Q 025758 107 RYVVQEVIKEMA-----KNRPIDTKG------------KRGFK-------VLVLNEV-DKLSREAQHSLRRTMEKYSA-S 160 (248)
Q Consensus 107 ~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~-------viiiDE~-d~l~~~~~~~ll~~le~~~~-~ 160 (248)
...+.+.++.+. ...+..+|+ ..+|+ ++++||| ..||+..+..+.+++.+... +
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 183 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG 183 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC
Confidence 222333333321 112223442 23677 9999999 89999999999999988743 4
Q ss_pred eeEEEEecCCCcccHHHhhhhhee
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|++||+. .....+.+|+..+
T Consensus 184 ~tviivtHd~-~~~~~~~d~v~~l 206 (249)
T 2qi9_C 184 LAIVMSSHDL-NHTLRHAHRAWLL 206 (249)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEEE
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5566666664 3444666776443
No 115
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.38 E-value=1.7e-12 Score=105.08 Aligned_cols=130 Identities=18% Similarity=0.303 Sum_probs=82.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceee-eCCCCcCc----------
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGF---------- 104 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------- 104 (248)
.+.+.||||+||||+++++++ +. +.+|.+.++|.++... .. .. .++ +.+.....
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G-l~-p~~G~I~~~g~~~~~~-~~-~~-----------~i~~~v~Q~~~l~~tv~enl~~ 96 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG-LL-PYSGNIFINGMEVRKI-RN-YI-----------RYSTNLPEAYEIGVTVNDIVYL 96 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT-SS-CCEEEEEETTEEGGGC-SC-CT-----------TEEECCGGGSCTTSBHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC-CC-CCCcEEEECCEECcch-HH-hh-----------heEEEeCCCCccCCcHHHHHHH
Confidence 367999999999999999998 66 9999999988755311 11 10 111 11111110
Q ss_pred ------chhHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 105 ------QDRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 105 ------~~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.....+.+.++.+. ...+..+|+ ..+|+++++||| ..||+.....+.+.+.+...
T Consensus 97 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 97 YEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp HHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred hhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 01112233333221 112223442 448999999999 89999999999999998765
Q ss_pred CeeEEEEecCCCcccHHHhh-hhhe
Q 025758 160 SCRLILCCNSSSKVTEAIRS-RCLN 183 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~s-R~~~ 183 (248)
.+|++||+...+ ..+.+ |+..
T Consensus 177 --tviivtHd~~~~-~~~~d~~i~~ 198 (263)
T 2pjz_A 177 --EGILVTHELDML-NLYKEYKAYF 198 (263)
T ss_dssp --EEEEEESCGGGG-GGCTTSEEEE
T ss_pred --cEEEEEcCHHHH-HHhcCceEEE
Confidence 677777776543 35667 7643
No 116
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.36 E-value=7.4e-11 Score=100.78 Aligned_cols=195 Identities=17% Similarity=0.137 Sum_probs=119.5
Q ss_pred cccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758 12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (248)
Q Consensus 12 ~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (248)
+.+++|+....+.+...+.. .....++++|++|+||+++|+.+..........-+.+++.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~------------------ 197 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVA------------------ 197 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETT------------------
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecC------------------
Confidence 45677766655555544432 2223489999999999999999997432222222222221
Q ss_pred cccceeeeCCCCcCcchhHHHHHHHHHHHhcCC---------CcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 025758 90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP---------IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-- 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-- 158 (248)
.. .....-.+. +..... .++....+...++|||++.|++..+..|++.+++..
T Consensus 198 -----------~~--~~~~~~~el---fg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~ 261 (387)
T 1ny5_A 198 -----------SI--PRDIFEAEL---FGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY 261 (387)
T ss_dssp -----------TS--CHHHHHHHH---HCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEEC
T ss_pred -----------CC--CHHHHHHHh---cCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEE
Confidence 10 000000000 000000 000001234589999999999999999999998732
Q ss_pred ---------CCeeEEEEecCCC-------cccHHHhhhhh--eeeecCCCH--HHHHHHHHHHHHH----cC---CCCCH
Q 025758 159 ---------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAKK----EG---LQLPS 211 (248)
Q Consensus 159 ---------~~~~~Il~t~~~~-------~~~~~l~sR~~--~i~~~~~~~--~~~~~il~~~~~~----~~---~~~~~ 211 (248)
.++++|.+||... .+-+++-.|.. .|.+||+.. +++..++...+.+ .+ ..+++
T Consensus 262 ~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 341 (387)
T 1ny5_A 262 RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTK 341 (387)
T ss_dssp CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECH
T ss_pred eCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 2456888888752 35667777773 566777654 5555555544432 22 23789
Q ss_pred HHHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758 212 GFATRLAEKS-NRSLRRAILSFETCRVQQL 240 (248)
Q Consensus 212 ~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~ 240 (248)
++++.+.... .||+|++.|.++.++..+.
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 9999998765 8999999999999887554
No 117
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.36 E-value=2.3e-13 Score=112.29 Aligned_cols=141 Identities=18% Similarity=0.302 Sum_probs=84.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+.|.||+|+||||+++++++ +..+..|.+.++|.++...... ......+...++.+++.+...... ..
T Consensus 83 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~---~~ 158 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFR-FYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG---ND 158 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTT-SSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCC---HH
T ss_pred EEEECCCCchHHHHHHHHHc-CCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCC---HH
Confidence 67999999999999999998 7889999999999765311100 000000000111122222111111 11
Q ss_pred HHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.+.+.++. +....+ ..+|+ ..+|+|+|+||| ..||+.....+.+.|.+...
T Consensus 159 ~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~ 238 (306)
T 3nh6_A 159 EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA 238 (306)
T ss_dssp HHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC
Confidence 12222111 111111 23442 237899999999 89999999999999988766
Q ss_pred CeeEEEEecCCCcccHHHhhhhhe
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+.++|++||+...+. . .+|+.+
T Consensus 239 ~~Tvi~itH~l~~~~-~-aD~i~v 260 (306)
T 3nh6_A 239 NRTTIVVAHRLSTVV-N-ADQILV 260 (306)
T ss_dssp TSEEEEECCSHHHHH-T-CSEEEE
T ss_pred CCEEEEEEcChHHHH-c-CCEEEE
Confidence 778888888866543 2 566543
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.33 E-value=1.2e-12 Score=101.85 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=44.7
Q ss_pred ccccCCCCCcccccccH----HHHHHHHHHhhcCC----CCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 3 WVDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQD----CPHLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 3 ~~~ky~p~~~~~lig~~----~~~~~l~~~~~~~~----~~~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
+..+|++.+|+++++.. .+++.+..++.... ..+++|+||+|+|||++|++++..+..
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34578899999999733 36666777776542 156999999999999999999997743
No 119
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.33 E-value=1.3e-11 Score=99.11 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcC-C-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeC
Q 025758 21 IAQNLKKLVTEQ-D-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (248)
Q Consensus 21 ~~~~l~~~~~~~-~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (248)
....+..|++.. . ..+++|+||||||||.+|.++|..+.. .|.+ .
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l--~G~v-------------------------------n 135 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF--YGCV-------------------------------N 135 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC--EEEC-------------------------------C
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc--ccee-------------------------------e
Confidence 455677777654 2 234999999999999999999984311 1111 0
Q ss_pred CCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHH--------Hhc-----CCeeEEE
Q 025758 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME--------KYS-----ASCRLIL 165 (248)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le--------~~~-----~~~~~Il 165 (248)
..... . .+....+..+++.||+...+ ++.+.+.++++ ... ..+++|+
T Consensus 136 ~~~~~-----------------f--~l~~~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIi 195 (267)
T 1u0j_A 136 WTNEN-----------------F--PFNDCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIV 195 (267)
T ss_dssp TTCSS-----------------C--TTGGGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEE
T ss_pred ccccc-----------------c--ccccccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEE
Confidence 00000 0 01112245677777776544 45566677776 322 4567999
Q ss_pred EecCCC-----------cccHHHhhhhheeeec--------CCCHHHHHHHHHHHHHHcCCCCC
Q 025758 166 CCNSSS-----------KVTEAIRSRCLNIRIN--------SPTEEQIVKVLEFIAKKEGLQLP 210 (248)
Q Consensus 166 ~t~~~~-----------~~~~~l~sR~~~i~~~--------~~~~~~~~~il~~~~~~~~~~~~ 210 (248)
+||... ...+.|+|||..+.|+ +.+.+++.+.+... ..+...++
T Consensus 196 tsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 196 TSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp EESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred EecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 999732 4567899999999998 89999999999855 55665544
No 120
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.32 E-value=9.6e-13 Score=105.88 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=81.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCc--ccccce--e------eecccceeeeCCC---Cc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSR--NIDLEL--T------TLSSANHVELSPS---DA 102 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~------~~~~~~~~~~~~~---~~ 102 (248)
+.|.||||+||||+++++++.+ ..+.+|.+.++|.++....... .....+ + ..++.+++.+... ..
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGR 111 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccc
Confidence 6699999999999999999831 4678899999887653111000 000000 0 0011111111000 00
Q ss_pred Ccc---hhHHHHHHHHHHH------hcCCCc-CCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 103 GFQ---DRYVVQEVIKEMA------KNRPID-TKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 103 ~~~---~~~~~~~~~~~~~------~~~~~~-~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
... ....+.+.++.+. ...+.. +|+ ..+|+++|+||| ..||+.....+++++.+...
T Consensus 112 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 191 (250)
T 2d2e_A 112 EVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 000 0112233333321 122334 664 337999999999 89999999999999998754
Q ss_pred -CeeEEEEecCCCcccHHH-hhhhhe
Q 025758 160 -SCRLILCCNSSSKVTEAI-RSRCLN 183 (248)
Q Consensus 160 -~~~~Il~t~~~~~~~~~l-~sR~~~ 183 (248)
+..+|++||+... ...+ .+|+.+
T Consensus 192 ~g~tvi~vtHd~~~-~~~~~~d~v~~ 216 (250)
T 2d2e_A 192 PNFGALVITHYQRI-LNYIQPDKVHV 216 (250)
T ss_dssp TTCEEEEECSSSGG-GGTSCCSEEEE
T ss_pred cCCEEEEEecCHHH-HHHhcCCEEEE
Confidence 4567777777554 3445 366643
No 121
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.32 E-value=2.3e-13 Score=109.08 Aligned_cols=143 Identities=17% Similarity=0.270 Sum_probs=84.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-cccccee-------eecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELT-------TLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|.++....... .....+. ..++.+++.+... .. ....
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~-~~-~~~~ 107 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE-GD-YTDE 107 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT-SC-SCHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhcc-CC-CCHH
Confidence 67999999999999999998 77889999999987653111110 0001110 0111222222100 01 1112
Q ss_pred HHHHHHHHHHh-----c-----------CCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIKEMAK-----N-----------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~~~~~-----~-----------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.+.+.++.+.- . ....+|+ ..+|+++++||| ..||+.....+.+.+.+...
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 187 (243)
T 1mv5_A 108 DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK 187 (243)
T ss_dssp HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcC
Confidence 23333333221 0 1123332 337899999999 89999988888888887765
Q ss_pred CeeEEEEecCCCcccHHHhhhhhee
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+..+|++||+...+ . ..+|+.++
T Consensus 188 ~~tvi~vtH~~~~~-~-~~d~v~~l 210 (243)
T 1mv5_A 188 GRTTLVIAHRLSTI-V-DADKIYFI 210 (243)
T ss_dssp TSEEEEECCSHHHH-H-HCSEEEEE
T ss_pred CCEEEEEeCChHHH-H-hCCEEEEE
Confidence 56788888876533 2 36666444
No 122
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.32 E-value=1.7e-12 Score=104.95 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=82.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-ccccccee-------eecccceeeeCCCCcCcchh
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELT-------TLSSANHVELSPSDAGFQDR 107 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 107 (248)
.+.|.||||+||||+++++++ +..+ .|.+.++|.++...... ......+. ..++.+++.+.... ...
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G-l~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~---~~~ 122 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR-FYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD---ATD 122 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT-SSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTT---CCH
T ss_pred EEEEECCCCCCHHHHHHHHhc-cCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCC---CCH
Confidence 367999999999999999998 5455 79999988654311100 00000000 01112222221100 011
Q ss_pred HHHHHHHHHH-----H-h----------cCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 108 YVVQEVIKEM-----A-K----------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 108 ~~~~~~~~~~-----~-~----------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
..+.+.++.+ . . ..+..+|+ ..+|+++++||| ..||+.....+.+.+.+..
T Consensus 123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 1222222211 1 0 11234442 347899999999 8999999999999998876
Q ss_pred CCeeEEEEecCCCcccHHHhhhhhe
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+..+|++||+...+ . ..+|+.+
T Consensus 203 ~~~tviivtH~~~~~-~-~~d~i~~ 225 (260)
T 2ghi_A 203 KNRTLIIIAHRLSTI-S-SAESIIL 225 (260)
T ss_dssp TTSEEEEECSSGGGS-T-TCSEEEE
T ss_pred CCCEEEEEcCCHHHH-H-hCCEEEE
Confidence 666788888886654 2 3566543
No 123
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=104.00 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=80.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHH--
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV-- 113 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 113 (248)
.+.|.||||+||||+++++++ +..+.+|.+.++|. +.+.... .. +...++.+++.+...... .....+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~-i~~v~Q~-~~---~~~~tv~enl~~~~~~~~-~~~~~~~~~~~ 105 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA-EMDKVEGHVAIKGS-VAYVPQQ-AW---IQNDSLRENILFGCQLEE-PYYRSVIQACA 105 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT-CSEEEEEEEEECSC-EEEECSS-CC---CCSEEHHHHHHTTSCCCT-THHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCE-EEEEcCC-Cc---CCCcCHHHHhhCccccCH-HHHHHHHHHHh
Confidence 367999999999999999998 67788899988873 2211111 10 111122222222111000 000011111
Q ss_pred -HHHHH----------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHH---HhcCCeeEEEE
Q 025758 114 -IKEMA----------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME---KYSASCRLILC 166 (248)
Q Consensus 114 -~~~~~----------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le---~~~~~~~~Il~ 166 (248)
...+. ...+..+|+ ..+|+++++||| ..||+.....+++.+. +...+..+|++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviiv 185 (237)
T 2cbz_A 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV 185 (237)
T ss_dssp CHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEE
T ss_pred hHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 11111 111223332 337899999999 8999999999999884 33345678888
Q ss_pred ecCCCcccHHHhhhhhee
Q 025758 167 CNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 167 t~~~~~~~~~l~sR~~~i 184 (248)
|++...+ . ..+|+..+
T Consensus 186 tH~~~~~-~-~~d~v~~l 201 (237)
T 2cbz_A 186 THSMSYL-P-QVDVIIVM 201 (237)
T ss_dssp CSCSTTG-G-GSSEEEEE
T ss_pred ecChHHH-H-hCCEEEEE
Confidence 8887654 2 46776443
No 124
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.30 E-value=5e-12 Score=101.77 Aligned_cols=143 Identities=19% Similarity=0.216 Sum_probs=82.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc-C------cchhHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-G------FQDRYV 109 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~ 109 (248)
+.|.||||+||||+++++++ +..+.+|.+.... .+.+....... +...++.+++.+..... + ......
T Consensus 34 ~~l~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~~-~i~~v~q~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 108 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLG-IHRPIQGKIEVYQ-SIGFVPQFFSS---PFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTT-SSCCSEEEEEECS-CEEEECSCCCC---SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEEec-cEEEEcCCCcc---CCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence 66999999999999999998 6788888875211 11111111000 00112222222211000 0 011122
Q ss_pred HHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecC
Q 025758 110 VQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNS 169 (248)
Q Consensus 110 ~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~ 169 (248)
+.+.++.+. ...+..+|+ ..+|+++++||| ..||+.....+.+.+.+... +..+|++||+
T Consensus 109 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 109 AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred HHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 333443321 112234442 448999999999 89999999999999988754 4567777776
Q ss_pred CCcccHHHhhhhheee
Q 025758 170 SSKVTEAIRSRCLNIR 185 (248)
Q Consensus 170 ~~~~~~~l~sR~~~i~ 185 (248)
... ...+.+|+..+.
T Consensus 189 ~~~-~~~~~d~v~~l~ 203 (253)
T 2nq2_C 189 PNQ-VVAIANKTLLLN 203 (253)
T ss_dssp HHH-HHHHCSEEEEEE
T ss_pred HHH-HHHhCCEEEEEe
Confidence 543 445667765543
No 125
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.30 E-value=2.8e-12 Score=101.85 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=77.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH-
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK- 115 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 115 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|. +.+....... +. .++.+++.+.... . .....+.++
T Consensus 37 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~-i~~v~q~~~~---~~-~tv~enl~~~~~~---~-~~~~~~~~~~ 106 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGR-ISFCSQFSWI---MP-GTIKENIIFGVSY---D-EYRYRSVIKA 106 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEECSC-EEEECSSCCC---CS-BCHHHHHHTTSCC---C-HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC-CCcCCccEEEECCE-EEEEecCCcc---cC-CCHHHHhhccCCc---C-hHHHHHHHHH
Confidence 66999999999999999998 77888999988873 2111111100 00 1222222221100 0 000111111
Q ss_pred ----HHHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH-HHHhcCCeeEEEE
Q 025758 116 ----EMAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILC 166 (248)
Q Consensus 116 ----~~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~-le~~~~~~~~Il~ 166 (248)
...... ...+|+ ..+|+++++||| ..||+.....+.+. +.+...+..+|++
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~v 186 (229)
T 2pze_A 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186 (229)
T ss_dssp TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 111111 123332 347899999999 89999999999986 4554445677888
Q ss_pred ecCCCcccHHHhhhhhe
Q 025758 167 CNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 167 t~~~~~~~~~l~sR~~~ 183 (248)
||+...+ . ..+|+..
T Consensus 187 tH~~~~~-~-~~d~v~~ 201 (229)
T 2pze_A 187 TSKMEHL-K-KADKILI 201 (229)
T ss_dssp CCCHHHH-H-HCSEEEE
T ss_pred cCChHHH-H-hCCEEEE
Confidence 8775443 2 3566543
No 126
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.29 E-value=9.3e-13 Score=112.06 Aligned_cols=140 Identities=19% Similarity=0.279 Sum_probs=85.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeecccceeeeCCCCcCcchh
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSANHVELSPSDAGFQDR 107 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
.+.|.||+|+||||++++|++ +.. .+|.+.++|.++....+. .+..+.+...++.+++.+.. ....
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG-l~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~----~~~~ 122 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR-LLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA----AHSD 122 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT-CSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC----CSCH
T ss_pred EEEEECCCCChHHHHHHHHhC-CCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcc----ccCH
Confidence 367999999999999999998 555 789999998765311110 00000000011111121111 0111
Q ss_pred HHHHHHHH-----HHHhcCCCc-----------CCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 108 YVVQEVIK-----EMAKNRPID-----------TKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 108 ~~~~~~~~-----~~~~~~~~~-----------~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
..+.+.++ .+....+.. +|+ ..+|+++++||| ..||+..+..+.+.|.+..
T Consensus 123 ~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 123 QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF 202 (390)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 22333332 233344444 553 348999999999 8999999999999998776
Q ss_pred CCeeEEEEecCCCcccHHHhhhhhe
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.+..+|++||+.+. . ...+|+.+
T Consensus 203 ~~~tvi~vtHd~e~-~-~~aDri~v 225 (390)
T 3gd7_A 203 ADCTVILCEARIEA-M-LECDQFLV 225 (390)
T ss_dssp TTSCEEEECSSSGG-G-TTCSEEEE
T ss_pred CCCEEEEEEcCHHH-H-HhCCEEEE
Confidence 66788888888643 3 23677643
No 127
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=6.3e-13 Score=108.50 Aligned_cols=146 Identities=19% Similarity=0.111 Sum_probs=84.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee--eccCC-cccccce--ee--------ecccceeeeCCCC--
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--IDAGS-RNIDLEL--TT--------LSSANHVELSPSD-- 101 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~--~~--------~~~~~~~~~~~~~-- 101 (248)
+.|.||||+|||||++++++ +..+.+|.+.++|.++. ..... ......+ +. .++.+++.+....
T Consensus 50 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~ 128 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNA-YEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI 128 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC----
T ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc
Confidence 66999999999999999998 77889999999987653 10000 0000000 00 0111222221100
Q ss_pred --cCcch---hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 102 --AGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 102 --~~~~~---~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
.+... ...+.+.++.+. ...+..+|+ ..+|+++|+||| ..||+..+..+.+++.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 129 GVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp -----CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 00001 112333333321 122224442 458999999999 8999999999999998774
Q ss_pred C-CeeE--EEEecCCCcccHHHhhhhhee
Q 025758 159 A-SCRL--ILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 159 ~-~~~~--Il~t~~~~~~~~~l~sR~~~i 184 (248)
. +..+ |++|++...+ ..+.+|+.++
T Consensus 209 ~~g~tv~~iivtHd~~~~-~~~~d~v~~l 236 (279)
T 2ihy_A 209 DSYPTLAMIYVTHFIEEI-TANFSKILLL 236 (279)
T ss_dssp HHCTTCEEEEEESCGGGC-CTTCCEEEEE
T ss_pred HCCCEEEEEEEecCHHHH-HHhCCEEEEE
Confidence 3 4556 7888876544 3566776433
No 128
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.27 E-value=3.9e-12 Score=114.26 Aligned_cols=158 Identities=14% Similarity=0.240 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeecc
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSS 91 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~ 91 (248)
.+++.+...+++|.. +.+.||+|+||||+++++++ +..+..|.+.++|.++....... +..... -..+.
T Consensus 357 ~~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b5x_A 357 PALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTR-FYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433 (582)
T ss_pred cccccceEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccH
Confidence 355555555655543 56999999999999999998 77889999999997653111100 000000 00112
Q ss_pred cceeeeCCCCcCcchhHHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCC
Q 025758 92 ANHVELSPSDAGFQDRYVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKL 142 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l 142 (248)
.+++.+... .. .....+.+.++. +.... ...+|+ ..+|+++++||| ..+
T Consensus 434 ~eni~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~L 511 (582)
T 3b5x_A 434 ANNIAYAAE-GE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511 (582)
T ss_pred HHHHhccCC-CC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 222222110 01 111222232221 11111 123442 458999999999 899
Q ss_pred CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 143 ~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
|+.....+.+.+.+..++..+|++||+...+. ..+|+.++
T Consensus 512 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~d~i~~l 551 (582)
T 3b5x_A 512 DTESERAIQAALDELQKNKTVLVIAHRLSTIE--QADEILVV 551 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH--hCCEEEEE
Confidence 99999999999998766677888888876442 35665443
No 129
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.24 E-value=2.6e-10 Score=95.64 Aligned_cols=209 Identities=12% Similarity=0.171 Sum_probs=117.5
Q ss_pred CCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee--eccCCcccccce
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--IDAGSRNIDLEL 86 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (248)
+.....++|.+..++.|.. +.. +.++++||+|+|||++++.++..+.. . .+.+++.... ...+.......+
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-P--YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-C--EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-C--EEEEEchhhccccCCCHHHHHHHH
Confidence 3455788999999999998 765 57999999999999999999987532 1 2222221110 000000000000
Q ss_pred -eee--------------cccceeeeCCCCcCcc----hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH---
Q 025758 87 -TTL--------------SSANHVELSPSDAGFQ----DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--- 144 (248)
Q Consensus 87 -~~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--- 144 (248)
..+ .....+.......... ......+.+..+.... . ++.+|+|||++.++.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS------K-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC------S-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC------C-CCeEEEEECHHHhhccCc
Confidence 000 0000000000000000 0112344454444321 1 367999999988754
Q ss_pred -HHHHHHHHHHHHhcCCeeEEEEecCCCccc---------HHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758 145 -EAQHSLRRTMEKYSASCRLILCCNSSSKVT---------EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213 (248)
Q Consensus 145 -~~~~~ll~~le~~~~~~~~Il~t~~~~~~~---------~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 213 (248)
.....+..+++.. .+..+|++++....+. ..+..|. ..+.+.+++.++..+++...+...+...++.
T Consensus 155 ~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~- 232 (357)
T 2fna_A 155 VNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY- 232 (357)
T ss_dssp CCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-
T ss_pred hhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-
Confidence 2233343344432 3567787776532111 1234454 6899999999999999998887667666554
Q ss_pred HHHHHHHccccHHHHHHHHHH
Q 025758 214 ATRLAEKSNRSLRRAILSFET 234 (248)
Q Consensus 214 ~~~l~~~~~g~~r~~~~~l~~ 234 (248)
..+...++|++..+..+...
T Consensus 233 -~~i~~~t~G~P~~l~~~~~~ 252 (357)
T 2fna_A 233 -EVVYEKIGGIPGWLTYFGFI 252 (357)
T ss_dssp -HHHHHHHCSCHHHHHHHHHH
T ss_pred -HHHHHHhCCCHHHHHHHHHH
Confidence 88888999988776555443
No 130
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.23 E-value=5.4e-11 Score=103.88 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=43.3
Q ss_pred CccccCCCCCccccc-ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 2 LWVDKYRPKTLDQVI-VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 2 ~~~~ky~p~~~~~li-g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
+|++||+|++|+++- +|..++..+..++..+. .++++.|++|||||+++..++..+...
T Consensus 13 ~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 13 GLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp --------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 699999999999995 68888888888877654 379999999999999999999987544
No 131
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.23 E-value=9.3e-12 Score=101.01 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=80.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCcccccceeee----------cccceeeeCC------
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNIDLELTTL----------SSANHVELSP------ 99 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------ 99 (248)
+.|.||||+||||+++++++.+ ..+.+|.+.++|.++....+..........+ ++.+++.+..
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~ 128 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY 128 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhh
Confidence 6799999999999999999832 2467899999887543111100000000000 0000000000
Q ss_pred -CCcCcch---hHHHHHHHHHHHh------cCCC-cCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHH
Q 025758 100 -SDAGFQD---RYVVQEVIKEMAK------NRPI-DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME 155 (248)
Q Consensus 100 -~~~~~~~---~~~~~~~~~~~~~------~~~~-~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le 155 (248)
....... ...+.+.++.+.- ..+. .+|+ ..+|+++|+||| ..||+.....+++++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~ 208 (267)
T 2zu0_C 129 RGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208 (267)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0000000 1123333333221 1111 2442 338999999999 8999999999999999
Q ss_pred HhcC-CeeEEEEecCCCcccHHH-hhhhh
Q 025758 156 KYSA-SCRLILCCNSSSKVTEAI-RSRCL 182 (248)
Q Consensus 156 ~~~~-~~~~Il~t~~~~~~~~~l-~sR~~ 182 (248)
+... +..+|++|++...+ ..+ .+|+.
T Consensus 209 ~l~~~g~tviivtHd~~~~-~~~~~d~v~ 236 (267)
T 2zu0_C 209 SLRDGKRSFIIVTHYQRIL-DYIKPDYVH 236 (267)
T ss_dssp TTCCSSCEEEEECSSGGGG-GTSCCSEEE
T ss_pred HHHhcCCEEEEEeeCHHHH-HhhcCCEEE
Confidence 8754 45677777775443 343 56663
No 132
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.21 E-value=8.6e-12 Score=111.90 Aligned_cols=141 Identities=19% Similarity=0.253 Sum_probs=84.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+.+.||+|+||||+++++++ +..+..|.+.++|.++....... .....+-..++.+++.+.... ....
T Consensus 370 ~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~ 445 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT---ATDE 445 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS---CCHH
T ss_pred EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC---CCHH
Confidence 67999999999999999998 77899999999997654111100 000000000111222221111 0111
Q ss_pred HHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.+.+.++. +....| ..+|+ ..+|+++++||| ..+|+.....+.+.+++...
T Consensus 446 ~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 525 (578)
T 4a82_A 446 EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK 525 (578)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC
Confidence 12222211 111112 13332 237999999999 89999999999999988777
Q ss_pred CeeEEEEecCCCcccHHHhhhhhe
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+.++|++||+.+.+. ..+|+.+
T Consensus 526 ~~t~i~itH~l~~~~--~~d~i~~ 547 (578)
T 4a82_A 526 DRTTLIVAHRLSTIT--HADKIVV 547 (578)
T ss_dssp TSEEEEECSSGGGTT--TCSEEEE
T ss_pred CCEEEEEecCHHHHH--cCCEEEE
Confidence 778888998877653 2566643
No 133
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.20 E-value=1.1e-11 Score=111.59 Aligned_cols=143 Identities=18% Similarity=0.259 Sum_probs=85.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeecccceeeeCCCCcCcchh
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSANHVELSPSDAGFQDR 107 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
.+.+.||+|+||||+++++++ +..+..|.+.++|.++....... .....+-..+..+++.+..... ..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~---~~ 458 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR-FYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA---TD 458 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT-SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTC---CT
T ss_pred EEEEECCCCCcHHHHHHHHhc-CcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCC---CH
Confidence 367999999999999999998 77899999999997654111100 0000000001111121111000 00
Q ss_pred HHHHHHH-----HHHHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 108 YVVQEVI-----KEMAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 108 ~~~~~~~-----~~~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
..+.+.+ ..+....+ ..+|+ ..+|+++++||| ..+|+.....+.+.+.+..
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 1111111 11111111 12332 347899999999 8999999999999998877
Q ss_pred CCeeEEEEecCCCcccHHHhhhhhee
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+.++|++||+...+. ..+|+.++
T Consensus 539 ~~~t~i~itH~l~~~~--~~d~i~~l 562 (598)
T 3qf4_B 539 EGKTSIIIAHRLNTIK--NADLIIVL 562 (598)
T ss_dssp TTSEEEEESCCTTHHH--HCSEEEEE
T ss_pred CCCEEEEEecCHHHHH--cCCEEEEE
Confidence 6778899999887642 25666443
No 134
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.20 E-value=1.1e-11 Score=101.65 Aligned_cols=134 Identities=20% Similarity=0.279 Sum_probs=76.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH-
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK- 115 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 115 (248)
+.|.||||+||||+++++++ +..+.+|.+.++|. +.+....... + . .++.+++. ... . ......+.++
T Consensus 67 ~~i~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~-i~~v~Q~~~l-~--~-~tv~enl~-~~~---~-~~~~~~~~~~~ 135 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGR-ISFCSQNSWI-M--P-GTIKENII-GVS---Y-DEYRYRSVIKA 135 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTT-SSCEEEEEEECCSC-EEEECSSCCC-C--S-SBHHHHHH-TTC---C-CHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCE-EEEEeCCCcc-C--c-ccHHHHhh-Ccc---c-chHHHHHHHHH
Confidence 67999999999999999998 67888899888773 2211111100 0 0 11222221 000 0 0000111111
Q ss_pred ----HHHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH-HHHhcCCeeEEEE
Q 025758 116 ----EMAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILC 166 (248)
Q Consensus 116 ----~~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~-le~~~~~~~~Il~ 166 (248)
......+ ..+|+ ..+|+++++||| ..||+..+..+++. +.+...+..+|++
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviiv 215 (290)
T 2bbs_A 136 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215 (290)
T ss_dssp TTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred hChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 1111111 23332 347899999999 89999999999986 4444445678888
Q ss_pred ecCCCcccHHHhhhhhe
Q 025758 167 CNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 167 t~~~~~~~~~l~sR~~~ 183 (248)
||+...+ . ..+|+..
T Consensus 216 tHd~~~~-~-~~d~i~~ 230 (290)
T 2bbs_A 216 TSKMEHL-K-KADKILI 230 (290)
T ss_dssp CCCHHHH-H-HSSEEEE
T ss_pred ecCHHHH-H-cCCEEEE
Confidence 8876443 2 4666543
No 135
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.20 E-value=3.4e-11 Score=92.71 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=69.8
Q ss_pred HHHHHHHHhhcCC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 21 IAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 21 ~~~~l~~~~~~~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
....|+.++.+-. ..+++|+|||||||||+|.++|+.+.. ++ +.+..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g----~i----------------------------~~fan 91 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG----AV----------------------------ISFVN 91 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC----EE----------------------------CCCCC
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC----Ce----------------------------eeEEe
Confidence 3456666665411 125999999999999999999997621 11 01100
Q ss_pred CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-HHHHHHHHHHHhc-------------CCeeEEE
Q 025758 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-AQHSLRRTMEKYS-------------ASCRLIL 165 (248)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-~~~~ll~~le~~~-------------~~~~~Il 165 (248)
...... + . ...+.++++|||++.-... ....+..+++..+ ...++|+
T Consensus 92 s~s~f~--------l---~--------~l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlII 152 (212)
T 1tue_A 92 STSHFW--------L---E--------PLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILL 152 (212)
T ss_dssp SSSCGG--------G---G--------GGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEE
T ss_pred ccchhh--------h---c--------ccCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEE
Confidence 000000 0 0 0113569999999732111 1233445555421 1247999
Q ss_pred EecCC---CcccHHHhhhhheeeecCCC
Q 025758 166 CCNSS---SKVTEAIRSRCLNIRINSPT 190 (248)
Q Consensus 166 ~t~~~---~~~~~~l~sR~~~i~~~~~~ 190 (248)
|||.. ....+.|.||+..+.|+.+.
T Consensus 153 TtN~~~~~~~~~~~L~SRi~~f~F~~~~ 180 (212)
T 1tue_A 153 TTNIHPAKDNRWPYLESRITVFEFPNAF 180 (212)
T ss_dssp EESSCTTSSSSCHHHHTSCEEEECCSCC
T ss_pred ecCCCcccccchhhhhhhEEEEEcCCCC
Confidence 99985 34567899999998887543
No 136
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.20 E-value=9.7e-12 Score=103.02 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=42.8
Q ss_pred cccCCCCCccccccc----HHHHHHHHHHhhcC---CCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 4 VDKYRPKTLDQVIVH----QDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 4 ~~ky~p~~~~~lig~----~~~~~~l~~~~~~~---~~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|++.+|+++++. ..++..+..++... ...+++|+||+|+|||++|++++..+.
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999862 33556666777653 235699999999999999999999774
No 137
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.19 E-value=1.2e-11 Score=111.02 Aligned_cols=144 Identities=14% Similarity=0.246 Sum_probs=85.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeecccceeeeCCCCcCcchh
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSANHVELSPSDAGFQDR 107 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 107 (248)
.+.+.||+|+||||+++++++ +..+.+|.+.++|.++....... +..... -..+..+++.+... .. ...
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~-~~~ 447 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EE-YSR 447 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT-SC-CCH
T ss_pred EEEEECCCCCCHHHHHHHHhh-ccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC-CC-CCH
Confidence 367999999999999999998 77899999999997653111000 000000 00011222222110 00 111
Q ss_pred HHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 108 YVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 108 ~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
..+.+.++. +.... ...+|+ ..+|+++++||| ..+|+.....+.+.+.+..
T Consensus 448 ~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b60_A 448 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_dssp HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 222222221 11111 123442 337899999999 8999999999999998876
Q ss_pred CCeeEEEEecCCCcccHHHhhhhhee
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
++..+|++||+...+. ..+|+.++
T Consensus 528 ~~~tvi~itH~~~~~~--~~d~i~~l 551 (582)
T 3b60_A 528 KNRTSLVIAHRLSTIE--QADEIVVV 551 (582)
T ss_dssp TTSEEEEECSCGGGTT--TCSEEEEE
T ss_pred CCCEEEEEeccHHHHH--hCCEEEEE
Confidence 6677888888876542 35665433
No 138
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.19 E-value=1.5e-11 Score=110.48 Aligned_cols=141 Identities=17% Similarity=0.277 Sum_probs=84.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccc-------eeeecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLE-------LTTLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+.+.||+|+||||+++++++ +..+.+|.+.++|.++....... +.... +-..+..+++.+..... ...
T Consensus 372 ~~ivG~sGsGKSTll~~l~g-~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~---~~~ 447 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPR-LIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA---TDD 447 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTT-SSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSC---CHH
T ss_pred EEEECCCCCCHHHHHHHHhC-CccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCC---CHH
Confidence 67999999999999999998 77899999999997654111100 00000 00001112222211111 111
Q ss_pred HHHHHHH-----HHHhc-----------CCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIK-----EMAKN-----------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~-----~~~~~-----------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
...+.++ .+... .+..+|+ ..+|+++++||| ..+|+.....+.+.+.+..+
T Consensus 448 ~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 527 (587)
T 3qf4_A 448 EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK 527 (587)
T ss_dssp HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC
Confidence 1112111 11111 1123332 347899999999 89999999999999988777
Q ss_pred CeeEEEEecCCCcccHHHhhhhhe
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+.++|++||+...+. ..+|+.+
T Consensus 528 ~~tvi~itH~l~~~~--~~d~i~v 549 (587)
T 3qf4_A 528 GCTTFIITQKIPTAL--LADKILV 549 (587)
T ss_dssp TCEEEEEESCHHHHT--TSSEEEE
T ss_pred CCEEEEEecChHHHH--hCCEEEE
Confidence 778999999876542 4566543
No 139
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.15 E-value=1.4e-11 Score=111.00 Aligned_cols=144 Identities=19% Similarity=0.303 Sum_probs=85.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccc-------eeeecccceeeeCCCCcCcchh
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLE-------LTTLSSANHVELSPSDAGFQDR 107 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
.+.+.||+|+||||+++++++ +..+.+|.+.++|.++....... +.... +...+..+++.+..........
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 450 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR-LYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA 450 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT-SSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHhc-CcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCH
Confidence 367999999999999999998 77899999999997653111100 00000 0001122222222111000112
Q ss_pred HHHHHHHHHH-----HhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758 108 YVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS 158 (248)
Q Consensus 108 ~~~~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~ 158 (248)
..+.+.++.. ....| ..+|+ ..+|+++++||| ..+|+.....+.+.+.+..
T Consensus 451 ~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 530 (595)
T 2yl4_A 451 EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 530 (595)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 2233333321 11111 23442 337999999999 8999999999999998876
Q ss_pred CCeeEEEEecCCCcccHHHhhhhh
Q 025758 159 ASCRLILCCNSSSKVTEAIRSRCL 182 (248)
Q Consensus 159 ~~~~~Il~t~~~~~~~~~l~sR~~ 182 (248)
.+..+|++||+...+ . ..+|+.
T Consensus 531 ~~~tvi~itH~~~~~-~-~~d~i~ 552 (595)
T 2yl4_A 531 DGRTVLVIAHRLSTI-K-NANMVA 552 (595)
T ss_dssp TTSEEEEECCCHHHH-H-HSSEEE
T ss_pred cCCEEEEEecCHHHH-H-cCCEEE
Confidence 667788888886543 2 356653
No 140
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.11 E-value=1.3e-10 Score=103.10 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=82.5
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (248)
+.|.||||+||||+++++++ +..+.+|.+.+.+..+........... ..++.+.+..............+.+.++.
T Consensus 297 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~l~~ 372 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVG-EITADEGSVTPEKQILSYKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKR 372 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTT-SSCCSBCCEESSCCCEEEECSSCCCCC---SSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCeeeEeechhccccc---CCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 77999999999999999998 778899998877665442222111000 00011111100000000000011111111
Q ss_pred -----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHH
Q 025758 117 -----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEA 176 (248)
Q Consensus 117 -----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~ 176 (248)
.....+..+|+ ..+|+++|+||| .+||...+..++++|.+... +..+|++||+.. ....
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~ 451 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDY 451 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHH
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence 11112223332 347899999999 89999999999999988743 456777776654 4557
Q ss_pred Hhhhhheee
Q 025758 177 IRSRCLNIR 185 (248)
Q Consensus 177 l~sR~~~i~ 185 (248)
+.+|+.++.
T Consensus 452 ~aDri~vl~ 460 (538)
T 3ozx_A 452 IADRIIVFK 460 (538)
T ss_dssp HCSEEEEEE
T ss_pred hCCEEEEEe
Confidence 778875543
No 141
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.09 E-value=2.2e-10 Score=101.69 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+++|+||| .+||...+..+.++|.+.. .+..+|++||+.. ....+.+|+.++
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl 475 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVF 475 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 558999999999 8999999999999998864 2456777777654 445777777544
No 142
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.08 E-value=2.8e-10 Score=102.23 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=79.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK 115 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (248)
.+.|.||||+|||||++++++ +..+.+|.+.+.. .+.+........ ...++.+.+.... .........+.+.++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~~-~i~~v~Q~~~~~---~~~tv~e~~~~~~-~~~~~~~~~~~~~l~ 457 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDL-TVAYKPQYIKAE---YEGTVYELLSKID-SSKLNSNFYKTELLK 457 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHT-SSCCSBSCCCCCC-CEEEECSSCCCC---CSSBHHHHHHHHH-HHHHHCHHHHHHTHH
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEEee-EEEEEecCccCC---CCCcHHHHHHhhh-ccCCCHHHHHHHHHH
Confidence 377999999999999999998 6788888776421 111111000000 0000000000000 000000111222233
Q ss_pred HHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCeeEEEEecCCCcccH
Q 025758 116 EMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTE 175 (248)
Q Consensus 116 ~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~ 175 (248)
.+. ...+..+|+ ..+++++|+||| .+||...+..+.++|.+.. .+..+|++||+. ....
T Consensus 458 ~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~ 536 (607)
T 3bk7_A 458 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMID 536 (607)
T ss_dssp HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHH
T ss_pred HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHH
Confidence 221 111223432 558999999999 8999999999999998874 345677777764 4445
Q ss_pred HHhhhhheee
Q 025758 176 AIRSRCLNIR 185 (248)
Q Consensus 176 ~l~sR~~~i~ 185 (248)
.+.+|+.++.
T Consensus 537 ~~adrv~vl~ 546 (607)
T 3bk7_A 537 YVSDRLIVFE 546 (607)
T ss_dssp HHCSEEEEEE
T ss_pred HhCCEEEEEc
Confidence 6777775543
No 143
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.04 E-value=1.1e-10 Score=103.60 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=44.5
Q ss_pred CCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+|+++|+||| ..||+.....++++|++...+..+|+++|+.. ....+.+|+.++
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~-~~~~~~d~i~vl 210 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI-VLDYLTDLIHII 210 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH-HHHHHCSEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH-HHHhhCCEEEEe
Confidence 47899999999 89999999999999998866667777777764 455777777554
No 144
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.99 E-value=3.9e-10 Score=100.15 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=43.8
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+++|+||| ..||+.....+++.|++... +..+|++||+.. ....+.+|+.++
T Consensus 174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 347899999999 89999999999999988743 456777777644 556777887654
No 145
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=1.4e-09 Score=97.63 Aligned_cols=141 Identities=12% Similarity=0.169 Sum_probs=77.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (248)
+.|.||||+||||+++++++ +..+.+|.. +....+......... .+ ..++.+.+..... ..........+.++.
T Consensus 381 v~iiG~NGsGKSTLlk~l~G-l~~p~~G~~-~~~~~i~~~~q~~~~--~~-~~tv~e~~~~~~~-~~~~~~~~~~~~l~~ 454 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAG-ALKPDEGQD-IPKLNVSMKPQKIAP--KF-PGTVRQLFFKKIR-GQFLNPQFQTDVVKP 454 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHT-SSCCSBCCC-CCSCCEEEECSSCCC--CC-CSBHHHHHHHHCS-STTTSHHHHHHTHHH
T ss_pred EEEECCCCCcHHHHHHHHhc-CCCCCCCcC-ccCCcEEEecccccc--cC-CccHHHHHHHHhh-cccccHHHHHHHHHH
Confidence 68999999999999999998 667776642 111111100000000 00 0000000000000 000111122233333
Q ss_pred HH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCeeEEEEecCCCcccHH
Q 025758 117 MA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEA 176 (248)
Q Consensus 117 ~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~ 176 (248)
+. ...+..+|+ ..+|+++++||| .+||+..+..+.++|.+.. .+..+|++||+.. ....
T Consensus 455 l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~ 533 (608)
T 3j16_B 455 LRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATY 533 (608)
T ss_dssp HTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHH
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence 22 222334442 458999999999 8999999999999998863 3456777777654 4446
Q ss_pred Hhhhhhee
Q 025758 177 IRSRCLNI 184 (248)
Q Consensus 177 l~sR~~~i 184 (248)
+.+|+.++
T Consensus 534 ~aDrvivl 541 (608)
T 3j16_B 534 LADKVIVF 541 (608)
T ss_dssp HCSEEEEC
T ss_pred hCCEEEEE
Confidence 77777443
No 146
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.94 E-value=5.7e-09 Score=87.10 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS 100 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (248)
+.+.+...+..|. .+++.||+|+||||+++++++ +..+..|.+.+++..-. ..+. ....+.+...
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g-~~~~~~g~i~i~~~~e~-~~~~-----------~~~~i~~~~g 224 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIME-FIPKEERIISIEDTEEI-VFKH-----------HKNYTQLFFG 224 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGG-GSCTTSCEEEEESSCCC-CCSS-----------CSSEEEEECB
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhC-CCcCCCcEEEECCeecc-cccc-----------chhEEEEEeC
Confidence 6677787887764 477999999999999999998 66788898888775311 0000 1112222221
Q ss_pred CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhh
Q 025758 101 DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRS 179 (248)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~s 179 (248)
...+.+..+.... ..+|+++++||+.. .. +.+.++....+. .+|+++|... .....+
T Consensus 225 -----gg~~~r~~la~aL---------~~~p~ilildE~~~--~e----~~~~l~~~~~g~~tvi~t~H~~~--~~~~~d 282 (330)
T 2pt7_A 225 -----GNITSADCLKSCL---------RMRPDRIILGELRS--SE----AYDFYNVLCSGHKGTLTTLHAGS--SEEAFI 282 (330)
T ss_dssp -----TTBCHHHHHHHHT---------TSCCSEEEECCCCS--TH----HHHHHHHHHTTCCCEEEEEECSS--HHHHHH
T ss_pred -----CChhHHHHHHHHh---------hhCCCEEEEcCCCh--HH----HHHHHHHHhcCCCEEEEEEcccH--HHHHhh
Confidence 2223444444333 23678999999954 22 233444433333 4777878766 445567
Q ss_pred hhheee
Q 025758 180 RCLNIR 185 (248)
Q Consensus 180 R~~~i~ 185 (248)
|+..+.
T Consensus 283 ri~~l~ 288 (330)
T 2pt7_A 283 RLANMS 288 (330)
T ss_dssp HHHHHH
T ss_pred hheehh
Confidence 765443
No 147
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.94 E-value=3e-10 Score=85.96 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=32.5
Q ss_pred CCeeEEEEeCC-CCCCHH----------------HHHHHHHHHHHhc-CCeeEEEEecCCCcc
Q 025758 129 RGFKVLVLNEV-DKLSRE----------------AQHSLRRTMEKYS-ASCRLILCCNSSSKV 173 (248)
Q Consensus 129 ~~~~viiiDE~-d~l~~~----------------~~~~ll~~le~~~-~~~~~Il~t~~~~~~ 173 (248)
.+++++++||+ ..+++. ....+.+.+.+.. .+..+|++||+...+
T Consensus 100 ~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 100 CFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEV 162 (171)
T ss_dssp CEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHH
T ss_pred CcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHh
Confidence 38899999999 788877 4466777766543 345788888886543
No 148
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1e-09 Score=98.43 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=43.5
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhheee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
..+|+++++||| ..||+.....+++++++.... ..+|+++|+. .....+.+|+.++.
T Consensus 237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~ 295 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIY 295 (608)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEE
T ss_pred HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEe
Confidence 347899999999 899999999999999987554 4566666654 44457778876553
No 149
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.93 E-value=7.8e-10 Score=99.35 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=44.0
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR 185 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~ 185 (248)
..+|+++|+||| .+||+.....++++|++... +..+|++||+.. ....+.+|+.++.
T Consensus 244 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~ 302 (607)
T 3bk7_A 244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY 302 (607)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence 348899999999 89999999999999988744 456777777644 5567777875553
No 150
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.93 E-value=9.9e-10 Score=106.61 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=86.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-cccccee-------eecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELT-------TLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+.+.||+|+||||+++++++ +..+..|.+.++|.++....... +...... ..+..+++.+....... ...
T Consensus 1062 v~ivG~sGsGKSTl~~~l~g-~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~-~~~ 1139 (1284)
T 3g5u_A 1062 LALVGSSGCGKSTVVQLLER-FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV-SYE 1139 (1284)
T ss_dssp EEEECSSSTTHHHHHHHHTT-SSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCC-CHH
T ss_pred EEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCC-CHH
Confidence 67999999999999999998 78899999999997654211100 0000000 00111122221111111 111
Q ss_pred HHHHHHH-----HHHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIK-----EMAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~-----~~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.+.+.++ .+....+ ..+|+ ..+|+++++||| ..+|......+.+.+++...
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCC
Confidence 1222222 1222222 12332 237899999999 79999999999999988777
Q ss_pred CeeEEEEecCCCcccHHHhhhhhe
Q 025758 160 SCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
+..+|++||+.+.+.. .+|+.+
T Consensus 1220 ~~tvi~isH~l~~i~~--~dri~v 1241 (1284)
T 3g5u_A 1220 GRTCIVIAHRLSTIQN--ADLIVV 1241 (1284)
T ss_dssp SSCEEEECSCTTGGGS--CSEEEE
T ss_pred CCEEEEEecCHHHHHc--CCEEEE
Confidence 7789999999887532 677643
No 151
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.92 E-value=9.3e-10 Score=106.79 Aligned_cols=133 Identities=20% Similarity=0.293 Sum_probs=78.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--------cccceeeecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--------IDLELTTLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+.+.||+|+||||+++++++ +..+..|.+.++|.++........ +...+...+..+++.+..+.. ...
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g-~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~---~~~ 494 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQR-LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV---TMD 494 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTT-SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSC---CHH
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCC---CHH
Confidence 67999999999999999998 778899999999976541111000 000000001111111111100 111
Q ss_pred HHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.+.+.++. +....+ ..+|+ ..+++|+++||| ..+|+.....+.+.++....
T Consensus 495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~ 574 (1284)
T 3g5u_A 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574 (1284)
T ss_dssp HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC
Confidence 11111111 111111 12332 237899999999 89999998899999987777
Q ss_pred CeeEEEEecCCCcc
Q 025758 160 SCRLILCCNSSSKV 173 (248)
Q Consensus 160 ~~~~Il~t~~~~~~ 173 (248)
+.++|++||+...+
T Consensus 575 ~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 575 GRTTIVIAHRLSTV 588 (1284)
T ss_dssp TSEEEEECSCHHHH
T ss_pred CCEEEEEecCHHHH
Confidence 77899999987654
No 152
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.91 E-value=1.4e-08 Score=103.38 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=57.2
Q ss_pred CCeeEEEEeCCCCCCH------HHHHHHHHHHHHh-----c-------CCeeEEEEecCCC-----cccHHHhhhhheee
Q 025758 129 RGFKVLVLNEVDKLSR------EAQHSLRRTMEKY-----S-------ASCRLILCCNSSS-----KVTEAIRSRCLNIR 185 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~------~~~~~ll~~le~~-----~-------~~~~~Il~t~~~~-----~~~~~l~sR~~~i~ 185 (248)
+...|++|||++.... ...+.|...++.. . .+..+|.++|.+. .+.+++.+|+.++.
T Consensus 1335 gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~ 1414 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILY 1414 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEE
T ss_pred CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEE
Confidence 3456999999875432 3455666666631 1 1345777888873 79999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q 025758 186 INSPTEEQIVKVLEFIAKK 204 (248)
Q Consensus 186 ~~~~~~~~~~~il~~~~~~ 204 (248)
++.|+.+.+..|+..++..
T Consensus 1415 i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 153
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.91 E-value=1.2e-09 Score=85.21 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=36.2
Q ss_pred cCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce
Q 025758 6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67 (248)
Q Consensus 6 ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~ 67 (248)
..+|+++. +..+++.+ ..|. .+.|.||||+|||||++++++ + .+.+|.+.
T Consensus 4 ~i~pk~~g----~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~G-l-~p~~G~I~ 53 (208)
T 3b85_A 4 VIRPKTLG----QKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAV-Q-ALQSKQVS 53 (208)
T ss_dssp CCCCCSHH----HHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHH-H-HHHTTSCS
T ss_pred ccccCCHh----HHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhc-C-CCcCCeee
Confidence 45777763 44455553 4443 366999999999999999998 5 77777774
No 154
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.88 E-value=3.8e-08 Score=79.81 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=21.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
+.|.||||+||||+++++++ +..+..|.+.++|.++
T Consensus 5 v~lvG~nGaGKSTLln~L~g-~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFK-SQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHH-HHC------------C
T ss_pred EEEECCCCCCHHHHHHHHhC-CCCCCCCccccCCccc
Confidence 78999999999999999999 5677888888777654
No 155
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.87 E-value=2e-09 Score=104.66 Aligned_cols=136 Identities=19% Similarity=0.275 Sum_probs=84.5
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--------cccceeeecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--------IDLELTTLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+-++||+|+||||+++++.+ +..+.+|.+.++|.++.......- +...+-..+..+++.+...... ...+
T Consensus 1108 vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~-~sd~ 1185 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLER-FYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSS-VTMA 1185 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTT-SSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTT-SCHH
T ss_pred EEEECCCCChHHHHHHHHhc-CccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCC-CCHH
Confidence 67999999999999999998 788999999999986652111100 0000000111222222211111 1122
Q ss_pred HHHHHHHH-----HHhcCCC-----------cCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~~-----~~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.+.+.++. +....|. .+|+ ..+++|++|||+ ..+|......+.+.|++..+
T Consensus 1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~ 1265 (1321)
T 4f4c_A 1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE 1265 (1321)
T ss_dssp HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC
Confidence 23333221 1122222 2221 237899999999 79999999999999998888
Q ss_pred CeeEEEEecCCCccc
Q 025758 160 SCRLILCCNSSSKVT 174 (248)
Q Consensus 160 ~~~~Il~t~~~~~~~ 174 (248)
+.++|+++|+...+.
T Consensus 1266 ~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A 1266 GRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp SSEEEEECSSSSTTT
T ss_pred CCEEEEeccCHHHHH
Confidence 889999999987654
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.85 E-value=9.5e-09 Score=82.96 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-cccceeccccee
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-AEKVKVENKTWK 74 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-~~~~~~~~~~~~ 74 (248)
+.+++++ |-..+++.+. +.+| ..+++.||+|+||||+++++++.+ .+. .|.+..++.++.
T Consensus 5 ~~~l~~l-~~~~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 5 IPEFKKL-GLPDKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIE 65 (261)
T ss_dssp -CCGGGS-SCCTHHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCC
T ss_pred CCChHHC-CCHHHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcce
Confidence 4456665 3334555554 3332 238899999999999999999954 444 677777775543
No 157
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.82 E-value=1.9e-08 Score=84.69 Aligned_cols=141 Identities=14% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT 88 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (248)
+.+++++ |....++.+ .... ...+++.||+||||||+++++++.+.....+.+-....+.....+....
T Consensus 103 ~~~l~~l-g~~~~l~~l---~~~~-~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~------ 171 (356)
T 3jvv_A 103 VLTMEEL-GMGEVFKRV---SDVP-RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC------ 171 (356)
T ss_dssp CCCTTTT-TCCHHHHHH---HHCS-SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS------
T ss_pred CCCHHHc-CChHHHHHH---HhCC-CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc------
Confidence 4466665 333343333 2221 1258999999999999999999966433233332222211110100000
Q ss_pred ecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758 89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~ 168 (248)
.-......... .+..+.+.... ..+|+++++||+- +......+++..+ .+..++++++
T Consensus 172 --~v~q~~~~~~~------~~~~~~La~aL---------~~~PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H 229 (356)
T 3jvv_A 172 --LVNQREVHRDT------LGFSEALRSAL---------REDPDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLH 229 (356)
T ss_dssp --EEEEEEBTTTB------SCHHHHHHHHT---------TSCCSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEES
T ss_pred --ceeeeeecccc------CCHHHHHHHHh---------hhCcCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEc
Confidence 00001111111 12333344333 3478899999995 4555555555543 2345666666
Q ss_pred CCCcccHHHhhhhhee
Q 025758 169 SSSKVTEAIRSRCLNI 184 (248)
Q Consensus 169 ~~~~~~~~l~sR~~~i 184 (248)
..+.. ...+|+..+
T Consensus 230 ~~~~~--~~~dRli~l 243 (356)
T 3jvv_A 230 TTSAA--KTIDRVVDV 243 (356)
T ss_dssp CSSHH--HHHHHHHHT
T ss_pred cChHH--HHHHHHhhh
Confidence 65543 445676443
No 158
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.81 E-value=6.3e-08 Score=83.42 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=98.2
Q ss_pred cccccHHHHHHHHHHhhcCC-----CCeeEEECCCCCCHHHHHHHH-HHHHcCCCcccceecccceeeccCCccccccee
Q 025758 14 QVIVHQDIAQNLKKLVTEQD-----CPHLLFYGPPGSGKKTLIMAL-LRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT 87 (248)
Q Consensus 14 ~lig~~~~~~~l~~~~~~~~-----~~~ill~Gp~G~GKTtla~~i-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (248)
.++|++.++..+.-.+-+|. -.|+||.|+||+ ||.+|+.+ ++ +..+. +...+. .+.. ..+.
T Consensus 214 pI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~-i~pR~---~ft~g~-----~ss~---~gLt 280 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDH-LAPRG---VYVDLR-----RTEL---TDLT 280 (506)
T ss_dssp CSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHH-TCSSE---EEEEGG-----GCCH---HHHS
T ss_pred ccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHH-hCCCe---EEecCC-----CCCc---cCce
Confidence 37899999988888876653 226999999999 99999999 76 43221 000010 0000 0000
Q ss_pred eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh---------c
Q 025758 88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------S 158 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~---------~ 158 (248)
.. + ..+.+.....+ . +. ..+..+++|||++.+++..+.+|++.||+. +
T Consensus 281 ~s-----~-r~~tG~~~~~G----~-l~------------LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lp 337 (506)
T 3f8t_A 281 AV-----L-KEDRGWALRAG----A-AV------------LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALN 337 (506)
T ss_dssp EE-----E-EESSSEEEEEC----H-HH------------HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEE
T ss_pred EE-----E-EcCCCcccCCC----e-eE------------EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcC
Confidence 00 0 00000000000 0 00 113459999999999999999999999974 2
Q ss_pred CCeeEEEEecCCC-----------cccHHHhhhhh--eeeecCCC-------------HHHHHHHHHHHH-HHcCCCCCH
Q 025758 159 ASCRLILCCNSSS-----------KVTEAIRSRCL--NIRINSPT-------------EEQIVKVLEFIA-KKEGLQLPS 211 (248)
Q Consensus 159 ~~~~~Il~t~~~~-----------~~~~~l~sR~~--~i~~~~~~-------------~~~~~~il~~~~-~~~~~~~~~ 211 (248)
....+|.++|... .+.+++.||+- .+..+.|+ .+.+++.+...- ..-...+++
T Consensus 338 arf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ 417 (506)
T 3f8t_A 338 ARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTE 417 (506)
T ss_dssp CCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECH
T ss_pred CCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCH
Confidence 3344666666543 78899999993 33334443 334444444322 112556888
Q ss_pred HHHHHHHH
Q 025758 212 GFATRLAE 219 (248)
Q Consensus 212 ~~~~~l~~ 219 (248)
++.++|.+
T Consensus 418 ea~~yI~~ 425 (506)
T 3f8t_A 418 EARKRLEH 425 (506)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 159
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.81 E-value=5.7e-09 Score=101.55 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=82.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--------CcccccceeeecccceeeeCCCCcCcchhH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--------SRNIDLELTTLSSANHVELSPSDAGFQDRY 108 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (248)
+.++||+|+||||+++++.+ +..+..|.+.++|.++..... .+.+...+...+..+++.+..++. ..+
T Consensus 447 vaivG~sGsGKSTll~ll~~-~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~---~~~ 522 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLR-YYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGI---TRE 522 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTT-SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTC---CHH
T ss_pred EEEEecCCCcHHHHHHHhcc-ccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccc---hHH
Confidence 67999999999999999998 778999999999975431110 011101111112222332222111 112
Q ss_pred HHHHHHHH-----HHhcCCC-----------cCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758 109 VVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA 159 (248)
Q Consensus 109 ~~~~~~~~-----~~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~ 159 (248)
.+.+.++. +....|. .+|+ -.+++|+++||+ ..+|......+.+.+++..+
T Consensus 523 ~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~ 602 (1321)
T 4f4c_A 523 EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK 602 (1321)
T ss_dssp HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence 22222221 1111111 2221 347899999999 89998888889999988877
Q ss_pred CeeEEEEecCCCcc
Q 025758 160 SCRLILCCNSSSKV 173 (248)
Q Consensus 160 ~~~~Il~t~~~~~~ 173 (248)
+.++|++||+...+
T Consensus 603 ~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 603 GRTTIIIAHRLSTI 616 (1321)
T ss_dssp TSEEEEECSCTTTT
T ss_pred CCEEEEEcccHHHH
Confidence 88899999988643
No 160
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.79 E-value=5.6e-08 Score=74.54 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=42.0
Q ss_pred CCCeeEEEEeCCCCC---CHHHHHHHHHHHHHhcCCeeEEE--Ee--cCC-CcccHHHhhh--hheeeecCCCHHHHHHH
Q 025758 128 KRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLIL--CC--NSS-SKVTEAIRSR--CLNIRINSPTEEQIVKV 197 (248)
Q Consensus 128 ~~~~~viiiDE~d~l---~~~~~~~ll~~le~~~~~~~~Il--~t--~~~-~~~~~~l~sR--~~~i~~~~~~~~~~~~i 197 (248)
..+++++||||++.+ ++.....+.++++.. ..+|+ ++ ++. ..+.+.++.+ +.++.+..-+.+.+.+.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~ 179 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPD 179 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHH
Confidence 457889999997655 445566666666642 23443 22 333 2566676664 36777776666665555
Q ss_pred HHH
Q 025758 198 LEF 200 (248)
Q Consensus 198 l~~ 200 (248)
+..
T Consensus 180 i~~ 182 (189)
T 2i3b_A 180 IVT 182 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 161
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.78 E-value=2.3e-08 Score=86.05 Aligned_cols=51 Identities=10% Similarity=0.259 Sum_probs=41.0
Q ss_pred eEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 132 ~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+++|+||| ..||+.....+.+.|.+...+..+|++||++ .+. .+.+|..++
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~-~~~-~~~d~i~~l 368 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLA-QIA-ARAHHHYKV 368 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH-HHH-TTCSEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHH-hhcCeEEEE
Confidence 89999999 6999999999999999887667888898886 443 345665444
No 162
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.76 E-value=3.9e-08 Score=77.24 Aligned_cols=133 Identities=21% Similarity=0.282 Sum_probs=71.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCC--CcccceecccceeeccCC-cccccceee------ecc----cceeeeCCCCcC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS-RNIDLELTT------LSS----ANHVELSPSDAG 103 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~----~~~~~~~~~~~~ 103 (248)
+.|.||||+||||+++++++. ..+ ..+.+.+.+.+.. ... ....+-++. ... ..++.+.....+
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~-~~p~~~~g~v~~ttr~~~--~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg 95 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKT-QPLYDTQVSVSHTTRQPR--PGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG 95 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-SCTTTEEECCCEECSCCC--TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcc-CCCCceEEEEEecCCCCC--cccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCC
Confidence 779999999999999999984 443 3455555544321 000 001011110 011 111222111111
Q ss_pred cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
.. . +.+..... .++++|+| +|+.....+.+.+. ....+++++++...+...+..|.
T Consensus 96 ~~-~----~~v~~~l~----------~G~illLD----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG-- 151 (219)
T 1s96_A 96 TS-R----EAIEQVLA----------TGVDVFLD----IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRG-- 151 (219)
T ss_dssp EE-H----HHHHHHHT----------TTCEEEEE----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTS--
T ss_pred CC-H----HHHHHHHh----------cCCeEEEE----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcC--
Confidence 11 1 11222222 24799999 88898888888776 34556666666665555555554
Q ss_pred eeecCCCHHHHHHHHHH
Q 025758 184 IRINSPTEEQIVKVLEF 200 (248)
Q Consensus 184 i~~~~~~~~~~~~il~~ 200 (248)
.-+.+++...+.+
T Consensus 152 ----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 152 ----QDSEEVIAKRMAQ 164 (219)
T ss_dssp ----CSCHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHH
Confidence 2355666666654
No 163
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.75 E-value=2.8e-09 Score=85.09 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=34.8
Q ss_pred CeeEEEEeCCC-CCC-----HHHHHHHHHHHHHhc-CCeeEEEEecCCCccc--------HHHh-hhhheeee
Q 025758 130 GFKVLVLNEVD-KLS-----REAQHSLRRTMEKYS-ASCRLILCCNSSSKVT--------EAIR-SRCLNIRI 186 (248)
Q Consensus 130 ~~~viiiDE~d-~l~-----~~~~~~ll~~le~~~-~~~~~Il~t~~~~~~~--------~~l~-sR~~~i~~ 186 (248)
++++++|||+. .++ +.....+.+++.... .+..+|+++|+..... ..+. +|+..+..
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 67899999994 443 344555666666553 3467788887766552 5666 77655543
No 164
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.71 E-value=6.3e-07 Score=91.61 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP 99 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (248)
+....+..++..+. +.++.||+|||||++++.+|+.+..+- +.+++
T Consensus 633 r~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~lg~~~--------------------------------v~~nc 678 (2695)
T 4akg_A 633 IGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNLGRVV--------------------------------VVFNC 678 (2695)
T ss_dssp HHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTTTCCC--------------------------------EEEET
T ss_pred HHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHhCCcE--------------------------------EEEEC
Confidence 35555666665443 356999999999999999999652211 22222
Q ss_pred CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHH-------HHhc-------------C
Q 025758 100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM-------EKYS-------------A 159 (248)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~l-------e~~~-------------~ 159 (248)
.+. . ....+...+..+.. ....+++||++.++++....+...+ .+.. .
T Consensus 679 ~e~-l-d~~~lg~~~~g~~~----------~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~ 746 (2695)
T 4akg_A 679 DDS-F-DYQVLSRLLVGITQ----------IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSP 746 (2695)
T ss_dssp TSS-C-CHHHHHHHHHHHHH----------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCT
T ss_pred CCC-C-ChhHhhHHHHHHHh----------cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCC
Confidence 211 1 11123444544443 2358999999999998777663333 2211 1
Q ss_pred CeeEEEEecC----CCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cc
Q 025758 160 SCRLILCCNS----SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK-------------SN 222 (248)
Q Consensus 160 ~~~~Il~t~~----~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~-------------~~ 222 (248)
...+++|.|. ..++++++++||+.+.+..|+.+.+.+++.. ..|+...+.....++.. .+
T Consensus 747 ~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hyd 823 (2695)
T 4akg_A 747 HTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYH 823 (2695)
T ss_dssp TCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCC
T ss_pred CceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCccc
Confidence 1224445542 2479999999999999999999998888653 34555444444333321 12
Q ss_pred ccHHHHHHHHHHH
Q 025758 223 RSLRRAILSFETC 235 (248)
Q Consensus 223 g~~r~~~~~l~~~ 235 (248)
-.+|.+...|..+
T Consensus 824 fglRalksvL~~a 836 (2695)
T 4akg_A 824 FGLRTLKGVLRNC 836 (2695)
T ss_dssp CSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 3567776666544
No 165
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.70 E-value=4.2e-08 Score=88.39 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=65.8
Q ss_pred CCeeEEECCCCCCHHHHHHHHHHHHcCC-CcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHH
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE 112 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (248)
+|.+.+.||+|+||||+++++++ +..| ++|.+..+|..+........ ......+++.+......+..++.+
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~G-l~~P~~sG~vt~~g~~i~~~~~~~~-------~~~~~~i~~v~Q~~~l~~~~tv~e 116 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSG-VALPRGSGIVTRCPLVLKLKKLVNE-------DKWRGKVSYQDYEIEISDASEVEK 116 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHS-CC-------CCCSCEEEEEEECSSS-------SCCEEEESCC---CCCCCHHHHHT
T ss_pred CCeEEEECCCCChHHHHHHHHhC-CCCCCCCCeEEEcCEEEEEecCCcc-------ccceeEEeeecccccCCCHHHHHH
Confidence 45699999999999999999998 5556 78999888876431111000 011123555555555555556666
Q ss_pred HHHHHHhc---CCCcCC---------CCCCeeEEEEeCC-------CCCCHHHHHHHHHHHHHh
Q 025758 113 VIKEMAKN---RPIDTK---------GKRGFKVLVLNEV-------DKLSREAQHSLRRTMEKY 157 (248)
Q Consensus 113 ~~~~~~~~---~~~~~~---------~~~~~~viiiDE~-------d~l~~~~~~~ll~~le~~ 157 (248)
.+...... .....+ ....|.++++||| ..+++.....+..++.++
T Consensus 117 ~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~ 180 (608)
T 3szr_A 117 EINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY 180 (608)
T ss_dssp THHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 55443211 111111 1235889999999 355666677777777775
No 166
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.68 E-value=1e-08 Score=87.80 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHhhcCC-----------------C-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 18 HQDIAQNLKKLVTEQD-----------------C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~-----------------~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
.+.+++.+...++.|. . ..+.|.||||+||||+++++++ +..+..|.+.+++.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G-l~~p~~GsI~~~g~~ 106 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG-IGNEEEGAAKTGVVE 106 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT-CCTTSTTSCCCCC--
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC-CCCccCceEEECCee
Confidence 4556777777777766 1 2478999999999999999998 677788888777654
No 167
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.68 E-value=6.4e-08 Score=90.61 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=41.1
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~ 183 (248)
..+|+++|+||| .+||+.....+.++|.+ .+..+|++||+. .....+.+|+..
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl-~~l~~~adrii~ 617 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDS-VFLDNVCEYIIN 617 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCH-HHHHHHCSEEEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEEE
Confidence 347899999999 89999999999999988 456677777764 444567777643
No 168
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.68 E-value=2.4e-08 Score=78.64 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|.||||+||||+++.+++.+
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999844
No 169
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.62 E-value=3.8e-08 Score=77.46 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+++.||||+||||+++.++..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999997553
No 170
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.62 E-value=2.2e-08 Score=88.80 Aligned_cols=163 Identities=11% Similarity=0.114 Sum_probs=84.0
Q ss_pred cccccHHHHHHHHH-HhhcCCCCeeEEECCCCCCHHHHHHH--HHHHHcCCCcccceecccceeeccCCcccccce--ee
Q 025758 14 QVIVHQDIAQNLKK-LVTEQDCPHLLFYGPPGSGKKTLIMA--LLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--TT 88 (248)
Q Consensus 14 ~lig~~~~~~~l~~-~~~~~~~~~ill~Gp~G~GKTtla~~--ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 88 (248)
.+.+...+++.+.. .+..|. .++|.||||+||||+++. +++ +..++.+.+.+++.+.............+ +.
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~G-l~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNG-IIEFDEPGVFVTFEETPQDIIKNARSFGWDLAK 96 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHH
T ss_pred cccCCchhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHH
Confidence 33434445555555 554443 377999999999999999 456 55556788888775421100000000000 00
Q ss_pred ecc-cceeeeCCC----CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC------CHHHHHHHHHHHHHh
Q 025758 89 LSS-ANHVELSPS----DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL------SREAQHSLRRTMEKY 157 (248)
Q Consensus 89 ~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l------~~~~~~~ll~~le~~ 157 (248)
... .....+... .........+.+.++...... + ..++.+++|||+..+ ++..+..+++++...
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L----S-~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 97 LVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAI----Q-KYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp HHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHH----H-HHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred hhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHH----H-HcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 000 000111000 000111112222222222211 1 135679999999542 456777788888766
Q ss_pred cC-CeeEEEEecCCCcc--------cHHHhhhhhee
Q 025758 158 SA-SCRLILCCNSSSKV--------TEAIRSRCLNI 184 (248)
Q Consensus 158 ~~-~~~~Il~t~~~~~~--------~~~l~sR~~~i 184 (248)
.. +..+|+++++...+ ...+.+|+.++
T Consensus 172 ~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L 207 (525)
T 1tf7_A 172 KQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVIL 207 (525)
T ss_dssp HHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEE
T ss_pred HHCCCEEEEEecCCCCccccccccceeeeeeEEEEE
Confidence 43 46788888888765 34556665443
No 171
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.58 E-value=3.1e-08 Score=92.75 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=40.9
Q ss_pred CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758 128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
..+|+++|+||| .+||+.....+.+.+.+. ...+|++||+.+. ...+.+|+..+
T Consensus 917 ~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~-v~~l~DrVivL 971 (986)
T 2iw3_A 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEF-TKNLTEEVWAV 971 (986)
T ss_dssp TTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHH-HTTTCCEEECC
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHH-HHHhCCEEEEE
Confidence 558999999999 899999999999999876 3467777777443 33556665444
No 172
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.58 E-value=4.4e-08 Score=75.72 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=41.1
Q ss_pred CeeEEEEeCCCCCC--H-HH--HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhh-heeeecCC
Q 025758 130 GFKVLVLNEVDKLS--R-EA--QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC-LNIRINSP 189 (248)
Q Consensus 130 ~~~viiiDE~d~l~--~-~~--~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~ 189 (248)
...||+|||++.+- . .. ...++..++.... ...+|++++.+..+..++++|+ ..+++.++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 46799999998772 1 11 1235555554433 3468999999889999999998 46666653
No 173
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.54 E-value=1.4e-06 Score=78.11 Aligned_cols=199 Identities=13% Similarity=0.142 Sum_probs=101.1
Q ss_pred CCCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHc--CCCcccceecccceeeccCCcccc
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~--~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
-|.....++|.+..++.|..++.. +....+.++||.|+||||+|..++.... ..... ++.-|.........
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~----~~v~wv~~~~~~~~- 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP----GGVHWVSVGKQDKS- 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT----TCEEEEEEESCCHH-
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC----CceEEEECCCCchH-
Confidence 366778899999999999999864 2333489999999999999998874210 00000 01111100000000
Q ss_pred cceeee-cccceeee--CCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758 84 LELTTL-SSANHVEL--SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS 160 (248)
Q Consensus 84 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~ 160 (248)
.-...+ .....+.. ..............+.+...... ...+-+|+||+++.. . .++....+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~LLVLDdv~~~--~-------~l~~l~~~ 257 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-------KHPRSLLILDDVWDS--W-------VLKAFDSQ 257 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-------TCTTCEEEEEEECCH--H-------HHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-------CCCCeEEEEeCCCCH--H-------HHHHhcCC
Confidence 000000 00000000 00011111111222223322221 113569999999641 1 23334555
Q ss_pred eeEEEEecCCCcccHHHhhhhheee-ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHH
Q 025758 161 CRLILCCNSSSKVTEAIRSRCLNIR-INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229 (248)
Q Consensus 161 ~~~Il~t~~~~~~~~~l~sR~~~i~-~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~ 229 (248)
..+|+||.+.. +..........+. ..+++.++..+++...+... ..-.++....|++.++|.+-.+.
T Consensus 258 ~~ilvTsR~~~-~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~ 325 (591)
T 1z6t_A 258 CQILLTTRDKS-VTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVS 325 (591)
T ss_dssp CEEEEEESCGG-GGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHH
T ss_pred CeEEEECCCcH-HHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHH
Confidence 67777766543 2222112222222 25889999999998776431 11124678899999998765443
No 174
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.51 E-value=2.2e-07 Score=87.01 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=33.4
Q ss_pred CeeEEEEeCC-CCCCHHHHHHH-HHHHHHhcC--CeeEEEEecCCCcccHHHhhh
Q 025758 130 GFKVLVLNEV-DKLSREAQHSL-RRTMEKYSA--SCRLILCCNSSSKVTEAIRSR 180 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~l-l~~le~~~~--~~~~Il~t~~~~~~~~~l~sR 180 (248)
++.++||||+ .++++.....+ ..+++.... +..+|++||+. ++. .+.+|
T Consensus 741 ~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~-el~-~lad~ 793 (934)
T 3thx_A 741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH-ELT-ALANQ 793 (934)
T ss_dssp TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG-GGG-GGGGT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH-HHH-HHhcc
Confidence 6789999999 78998777666 555665532 46777777774 333 34444
No 175
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.49 E-value=5.3e-07 Score=82.24 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=39.4
Q ss_pred Cee--EEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 130 GFK--VLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 130 ~~~--viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+|+ ++|+||| ..||+.....+.+++.+... +..+|++||+.. +.. ..+|+.++
T Consensus 220 ~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~-~~d~ii~l 276 (670)
T 3ux8_A 220 RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TML-AADYLIDI 276 (670)
T ss_dssp CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH-HHH-HCSEEEEE
T ss_pred CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHh-hCCEEEEe
Confidence 555 9999999 89999999999999987743 467888888865 332 35565444
No 176
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.47 E-value=3.5e-07 Score=76.05 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=40.4
Q ss_pred CCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
..++++++||| ..||+.....+++++.+...+..+|++|++. .+. .+.+|+
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~-~~~-~~~d~~ 291 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK-IVM-EAADLL 291 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT-TGG-GGCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCH-HHH-hhCceE
Confidence 46789999999 7899999999999998876556788888884 333 456766
No 177
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.46 E-value=2.1e-06 Score=88.51 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=72.1
Q ss_pred CCeeEEEEeCCCCCCH------HHHHHHHHHHHHh------------cCCeeEEEEecCC-----CcccHHHhhhhheee
Q 025758 129 RGFKVLVLNEVDKLSR------EAQHSLRRTMEKY------------SASCRLILCCNSS-----SKVTEAIRSRCLNIR 185 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~------~~~~~ll~~le~~------------~~~~~~Il~t~~~-----~~~~~~l~sR~~~i~ 185 (248)
+..-|++|||+++-.+ .....|..+++.. ..+..+|.++|.+ ..+.+.+.+|+.++.
T Consensus 1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence 4567999999976543 3456666777631 1234477777766 358999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHc-CC-----CCCHHHHHHHHHHc---------------cccHHHHHHHHHHHhh
Q 025758 186 INSPTEEQIVKVLEFIAKKE-GL-----QLPSGFATRLAEKS---------------NRSLRRAILSFETCRV 237 (248)
Q Consensus 186 ~~~~~~~~~~~il~~~~~~~-~~-----~~~~~~~~~l~~~~---------------~g~~r~~~~~l~~~~~ 237 (248)
++.|+.+.+..|...++..- +. .+.+..+...++.. --|+|++.+.++-+..
T Consensus 1453 i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~ 1525 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLE 1525 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHH
Confidence 99999999999987765531 11 11133333333221 2388998888877664
No 178
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.45 E-value=2.1e-06 Score=76.48 Aligned_cols=190 Identities=14% Similarity=0.144 Sum_probs=94.0
Q ss_pred cccHHHHHHHHHHhhcC---CCCeeEEECCCCCCHHHHHHHHHHH---HcCCCcccceecccceeeccCCcccccceeee
Q 025758 16 IVHQDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQ---VFGPGAEKVKVENKTWKIDAGSRNIDLELTTL 89 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~---~~~~ill~Gp~G~GKTtla~~ia~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (248)
+|.+..++.|..++..+ ....+.++|+.|+||||+|+.++.. -..... ++.-|................
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-----~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-----DSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-----SEEEEEECCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-----CcEEEEEECCCCCCCHHHHHH
Confidence 59999999998888644 2334899999999999999999952 111111 122221001000000000000
Q ss_pred cccceeeeC-----CCCcCcchhHHHHHHHHHHHhcCCCcCCCCCC-eeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeE
Q 025758 90 SSANHVELS-----PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRL 163 (248)
Q Consensus 90 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~ 163 (248)
.....++.. ...............+..... +. .-+|+||+++..+. . .+ ... .+..+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~---------~~kr~LlVLDdv~~~~~--~-~~----~~~-~gs~i 268 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALI---------DRPNTLFVFDDVVQEET--I-RW----AQE-LRLRC 268 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHT---------TSTTEEEEEEEECCHHH--H-HH----HHH-TTCEE
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHc---------CCCcEEEEEECCCCchh--h-cc----ccc-CCCEE
Confidence 000000000 000000011111222222221 22 56999999975221 1 11 111 45667
Q ss_pred EEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccccHHHH
Q 025758 164 ILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLRRA 228 (248)
Q Consensus 164 Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~ 228 (248)
|+||.+. .+..........+.+++++.++..+++.+.+..... .-.++....|++.|+|.+=.+
T Consensus 269 lvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl 333 (549)
T 2a5y_B 269 LVTTRDV-EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL 333 (549)
T ss_dssp EEEESBG-GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred EEEcCCH-HHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHH
Confidence 7776653 333222112256899999999999988876432211 111345778888888865433
No 179
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.44 E-value=5.5e-07 Score=76.30 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=26.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
.++++||+|+||||+++++++.+.....|.+...+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 38999999999999999999955332256654433
No 180
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.44 E-value=3.8e-07 Score=69.57 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=34.2
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC------cccHHHhhhh
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSRC 181 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~------~~~~~l~sR~ 181 (248)
++.+++|||++.++++....+..+.++ +..+|++..+.. ...+.+.+++
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~a 130 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLA 130 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHh
Confidence 578999999999977655555555553 566777765333 5666777777
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.44 E-value=4.8e-07 Score=74.18 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
++|.||||+||||+++.+++.+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 77999999999999999998653
No 182
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.43 E-value=4.9e-07 Score=76.33 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
+.+...++.|. .+++.||+|+||||+++++++ +..+..|.+.+++.
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~-~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQ-EIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHT-TSCTTSCEEEEESS
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHh-cCCCCceEEEECCc
Confidence 67777777764 477999999999999999998 66778888888763
No 183
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.42 E-value=1.4e-06 Score=68.42 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
++++||+|+||||++.-++..+..
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 889999999999999888876643
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.41 E-value=6.7e-07 Score=69.73 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=19.3
Q ss_pred eEEECCCCCCHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~ 56 (248)
+++.||||+||||+++.++.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999997
No 185
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3.4e-07 Score=79.58 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=32.1
Q ss_pred HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc-c-ceecc
Q 025758 25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-K-VKVEN 70 (248)
Q Consensus 25 l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~-~-~~~~~ 70 (248)
++..+..| ..+.|.||+|+||||+++++++ +..+..| . +.+++
T Consensus 131 vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~G-l~~p~~G~~pI~vdg 175 (460)
T 2npi_A 131 IRMSNFEG--PRVVIVGGSQTGKTSLSRTLCS-YALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHSSSC--CCEEEEESTTSSHHHHHHHHHH-TTHHHHCCCCEEEEC
T ss_pred CceEeCCC--CEEEEECCCCCCHHHHHHHHhC-cccccCCceeEEEcC
Confidence 34444433 3477999999999999999998 5566667 6 76665
No 186
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.39 E-value=1.3e-05 Score=83.01 Aligned_cols=169 Identities=14% Similarity=0.193 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeC
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS 98 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (248)
++..-.|..++..+... .+.||+|||||++++.+|+.+..+- +.+.
T Consensus 591 drcy~tl~~Al~~~~gg--~~~GPaGtGKTet~k~La~~lgr~~--------------------------------~vfn 636 (3245)
T 3vkg_A 591 DRCYLTLTQALESRMGG--NPFGPAGTGKTETVKALGSQLGRFV--------------------------------LVFC 636 (3245)
T ss_dssp HHHHHHHHHHHHTTCEE--EEECSTTSSHHHHHHHHHHHTTCCE--------------------------------EEEE
T ss_pred HHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhCCeE--------------------------------EEEe
Confidence 34555666666554333 4999999999999999999763211 2222
Q ss_pred CCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH-------h--------------
Q 025758 99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-------Y-------------- 157 (248)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~-------~-------------- 157 (248)
+... . +.......+..++. ...-.++||+++++.+....+...+.. .
T Consensus 637 C~~~-~-d~~~~g~i~~G~~~----------~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l 704 (3245)
T 3vkg_A 637 CDEG-F-DLQAMSRIFVGLCQ----------CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISL 704 (3245)
T ss_dssp CSSC-C-CHHHHHHHHHHHHH----------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEEC
T ss_pred CCCC-C-CHHHHHHHHhhHhh----------cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEee
Confidence 2211 1 11123444555554 234679999999998876665554431 1
Q ss_pred cCCeeEEEEecC----CCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------
Q 025758 158 SASCRLILCCNS----SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK------------- 220 (248)
Q Consensus 158 ~~~~~~Il~t~~----~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~------------- 220 (248)
..+..+++|.|. ..++++++++||+.+.+..|+.+.+.+++. -.+|+.-.......++..
T Consensus 705 ~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~H 781 (3245)
T 3vkg_A 705 HQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSH 781 (3245)
T ss_dssp CTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred cCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 011234555542 247999999999999999999999999876 566776444433333321
Q ss_pred ccccHHHHHHHHHHHh
Q 025758 221 SNRSLRRAILSFETCR 236 (248)
Q Consensus 221 ~~g~~r~~~~~l~~~~ 236 (248)
++=.+|.+...|..+.
T Consensus 782 YDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 782 YDFGLRALKSVLVSAG 797 (3245)
T ss_dssp CCCSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHH
Confidence 1224777777766554
No 187
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.38 E-value=8e-07 Score=83.10 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=31.3
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHH-HHHHHhc--CCeeEEEEecCCC
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLR-RTMEKYS--ASCRLILCCNSSS 171 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll-~~le~~~--~~~~~Il~t~~~~ 171 (248)
++.++|+||| .++++.....+. .+++... .+..+|++||+.+
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 6789999999 799998777776 6666652 3566777777753
No 188
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.36 E-value=5.1e-07 Score=71.53 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++|.||||+||||+++.++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 8899999999999999999853
No 189
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.34 E-value=3e-07 Score=68.39 Aligned_cols=51 Identities=24% Similarity=0.184 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~ 74 (248)
.+...+...+.+|. .+.|.||+|+||||+++++++.+ +..|.+.+.+..+.
T Consensus 21 ~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 21 FAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred HHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence 34444444444442 37799999999999999999954 77888888776543
No 190
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.32 E-value=1.1e-06 Score=73.80 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|+||||+||||+++.++..+
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999854
No 191
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.32 E-value=5.6e-07 Score=82.06 Aligned_cols=53 Identities=9% Similarity=0.176 Sum_probs=40.5
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+|+++++||| ..||+.....+++++.+... +..+|++||+...+ ...+|+.++
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~--~~~d~i~~l 618 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI--KTADYIIDL 618 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HhCCEEEEe
Confidence 4689999999 89999999999999988753 46788888887543 235665544
No 192
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.29 E-value=1.2e-06 Score=80.66 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|+||||+||||+++.+++..
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 38899999999999999999854
No 193
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.26 E-value=2.2e-06 Score=79.27 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|+||||+||||+++.+++..
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 38899999999999999999853
No 194
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.25 E-value=4.8e-05 Score=73.56 Aligned_cols=197 Identities=13% Similarity=0.175 Sum_probs=99.6
Q ss_pred CCCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHH--cCCCcccceecccceeeccCCcccc
Q 025758 8 RPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQV--FGPGAEKVKVENKTWKIDAGSRNID 83 (248)
Q Consensus 8 ~p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
-|.....++|.+..++.|..++.. +....+.++|+.|+||||||+.++... ...... ++.-|..........
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFS----GGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTST----TCEEEEECCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCC----CeEEEEEECCcCchH
Confidence 355667899999999999998853 233338899999999999998877532 010000 000011000000000
Q ss_pred cceeeecccceeeeCC--CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758 84 LELTTLSSANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC 161 (248)
Q Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~ 161 (248)
...........+.... ....... ..+....+..... .....-+|+||+++.. . .++....+.
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~l~----~~~~~~LlvlDd~~~~--~-------~~~~~~~~~ 258 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLN---IEEAKDRLRVLML----RKHPRSLLILDDVWDP--W-------VLKAFDNQC 258 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSS---HHHHHHHHHHHTS----SSSCSCEEEEESCCCH--H-------HHTTTCSSC
T ss_pred HHHHHHHHHHHhhhhcccccCCCCC---HHHHHHHHHHHHh----ccCCCEEEEEecCCCH--H-------HHHhhcCCC
Confidence 0000000000000000 0000011 1222222221111 1223569999999742 1 233345556
Q ss_pred eEEEEecCCCcccHHHhhhhheeeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHH
Q 025758 162 RLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226 (248)
Q Consensus 162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~-~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r 226 (248)
++|+||.+.. +..........+.+.+ ++.++..+++...+.... .-.++....|++.++|.+=
T Consensus 259 ~ilvTtR~~~-~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 259 QILLTTRDKS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp EEEEEESSTT-TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHTTTCHH
T ss_pred EEEEEcCCHH-HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHhCCCHH
Confidence 7777776543 2222223335677775 899998888887663322 2224568889999988543
No 195
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.21 E-value=1.6e-05 Score=67.21 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
.+|+++|+||| ..||+.....+++++.+... +..+|++||+... ....+|+.++
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~~d~~~~l 357 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEAFDRKLRI 357 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTTCSCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHhCCEEEEE
Confidence 58899999999 89999999999999988754 3567788887643 2344555443
No 196
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.21 E-value=9.1e-07 Score=78.41 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=60.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCccc-ceecccceeeccCCccccccee--eecccceeeeCCCCc-CcchhHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGSRNIDLELT--TLSSANHVELSPSDA-GFQDRYVVQE 112 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 112 (248)
+++.||||+||||+++.+++.+ ++..+. +.+.+...............+. .........+..... ..+..+..+.
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~-~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~ 362 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENA-CANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQI 362 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH-HTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH-HhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHHH
Confidence 8899999999999999999854 433221 2222211000000000000000 000000112211111 1222222333
Q ss_pred HHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHH-----HHHHHHHHHHHhc-CCeeEEEEecCC
Q 025758 113 VIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSRE-----AQHSLRRTMEKYS-ASCRLILCCNSS 170 (248)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~-----~~~~ll~~le~~~-~~~~~Il~t~~~ 170 (248)
.+.... ..++++++|| + ..++.. ....+.+++.... .+..+|+++++.
T Consensus 363 ~~a~~l---------~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 363 IKSEIN---------DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHH---------TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHH---------hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 233222 2367899999 7 667665 6777777776654 346778887776
No 197
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.21 E-value=9.5e-06 Score=67.44 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=30.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
+.|.||||+||||+++.+++. ..+.++.+.+.+.+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~-l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANW-LKNHGFSVVIAASDT 167 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHhcCCEEEEEeecc
Confidence 899999999999999999984 567778887776543
No 198
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.18 E-value=1.2e-05 Score=66.15 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
++|+||||+|||++|..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 799999999999999999974
No 199
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.17 E-value=5.7e-06 Score=68.07 Aligned_cols=37 Identities=30% Similarity=0.243 Sum_probs=31.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
.+.|.||+|+||||+++.+|+. ..+.+|.+.+.+.+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagl-l~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRY-YQNLGKKVMFCAGDT 140 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-HHTTTCCEEEECCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHhcCCEEEEEeecC
Confidence 3889999999999999999984 567788888877654
No 200
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.16 E-value=2.3e-06 Score=69.56 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
++|+||||+||||+++.++..+.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999998553
No 201
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.15 E-value=1.9e-06 Score=74.43 Aligned_cols=140 Identities=13% Similarity=0.079 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc---ceeeccCCcccccceeeeccccee
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK---TWKIDAGSRNIDLELTTLSSANHV 95 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
..+++.+ ..+..| ..+.|.||+|+||||++++|++ +..++.|.+.++|. ......... .........+
T Consensus 145 ~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag-~~~~~~G~i~~~G~r~~ev~~~~~~~-----~~~~~l~r~i 215 (438)
T 2dpy_A 145 VRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMAR-YTRADVIVVGLIGERGREVKDFIENI-----LGPDGRARSV 215 (438)
T ss_dssp CHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHH-HSCCSEEEEEEESCCHHHHHHHHHTT-----THHHHHHTEE
T ss_pred ceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhc-ccCCCeEEEEEeceecHHHHHHHHhh-----ccccccCceE
Confidence 4566666 555444 3477999999999999999999 56777888877775 221000000 0000011234
Q ss_pred eeCCC-CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC--------------------CCCCHHHHHHHHHHH
Q 025758 96 ELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--------------------DKLSREAQHSLRRTM 154 (248)
Q Consensus 96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~--------------------d~l~~~~~~~ll~~l 154 (248)
.+.+. +.....+.++.+.+...++.... ....-..++|.+ ..+++.....+.+++
T Consensus 216 ~~v~q~~~~~~~~~~v~~~~~~~ae~~~~----~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll 291 (438)
T 2dpy_A 216 VIAAPADVSPLLRMQGAAYATRIAEDFRD----RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALV 291 (438)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHh----CCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHH
Confidence 44443 23334455555544433322111 122334566653 456777788899999
Q ss_pred HHhcC---C-e------eEEEEecCCC
Q 025758 155 EKYSA---S-C------RLILCCNSSS 171 (248)
Q Consensus 155 e~~~~---~-~------~~Il~t~~~~ 171 (248)
++... . . .+++++|+..
T Consensus 292 ~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 292 ERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp TTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred HHHHhccCCCCcccceeEEEEeCCCcc
Confidence 88744 1 3 4555566654
No 202
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.14 E-value=3.2e-06 Score=64.41 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=24.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
++|.||||+||||+++.+++. ..+.+.+++..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~ 36 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDI 36 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHH
T ss_pred EEEECCCCCcHHHHHHHHhcc----cCCeEEEcccc
Confidence 789999999999999999973 23445555543
No 203
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.12 E-value=2.5e-06 Score=72.80 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|+||||+||||+++.++-..
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 8999999999999999776433
No 204
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.12 E-value=3.3e-05 Score=64.54 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=41.8
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhheeee
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNIRI 186 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~i~~ 186 (248)
+|+++++||| .+||+.....+...+.+.... ..+|++||+ ..+. .+.+|+..+..
T Consensus 272 ~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~-~~~~-~~~d~~~~l~~ 328 (339)
T 3qkt_A 272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EELK-DAADHVIRISL 328 (339)
T ss_dssp TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC-GGGG-GGCSEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh-HHHH-HhCCEEEEEEe
Confidence 6899999999 899999999999999886433 467778877 4443 56677655544
No 205
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.07 E-value=4.8e-06 Score=69.87 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCC-e--eEEECCCCCCHHHHHHHHHHHHc
Q 025758 23 QNLKKLVTEQDCP-H--LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 23 ~~l~~~~~~~~~~-~--ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
..|...+..|.++ + ++|+||||+||||++..++..+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555555423433 2 89999999999999999998654
No 206
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.07 E-value=1.5e-05 Score=75.63 Aligned_cols=52 Identities=8% Similarity=0.216 Sum_probs=33.0
Q ss_pred CCeeEEEEeCC-CCCCHHH-HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEV-DKLSREA-QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~-d~l~~~~-~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
.++.++||||+ .++++.. ...+..+++.... +..+|++||+. .+...+.++.
T Consensus 867 ~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~ 922 (1022)
T 2o8b_B 867 TAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNV 922 (1022)
T ss_dssp CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCS
T ss_pred CCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcc
Confidence 36789999999 6788765 3446677776643 45566666654 4444444443
No 207
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.03 E-value=1.3e-05 Score=71.58 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=36.2
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC-------cccHHHhhhhheeeecCC
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS-------KVTEAIRSRCLNIRINSP 189 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~-------~~~~~l~sR~~~i~~~~~ 189 (248)
..+++||||+.+++......|++.+ +....+|++..... .+...+.+.+..+.+...
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~QL~~v~~g~~~~~l~~~~~~~~L~~~ 342 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQV 342 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTSCCCSSSCCHHHHHHHHSCEEECCCC
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccccCCccCCcHHHHHHhcCCEEEccee
Confidence 5689999999999987666555544 34567777765442 344455555555555443
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.03 E-value=3.3e-05 Score=66.45 Aligned_cols=29 Identities=31% Similarity=0.267 Sum_probs=23.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKV 66 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~ 66 (248)
+++.||+|+||||++..+|..+. +....+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~-~~G~kV 128 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYK-KRGYKV 128 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH-HTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HcCCeE
Confidence 89999999999999999998663 344444
No 209
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.03 E-value=1e-05 Score=66.28 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=26.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
+.++|++|+||||++..+|+.+ .+..+.+.+.+.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~-~~~~~~v~l~~~ 134 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAA 134 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHH-HHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEecC
Confidence 7888999999999999999855 445566655443
No 210
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.01 E-value=2.2e-05 Score=65.89 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
++++||||+||||++..++..+...
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999766433
No 211
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.00 E-value=4.3e-06 Score=72.79 Aligned_cols=93 Identities=23% Similarity=0.300 Sum_probs=53.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (248)
++|.||||+||||+++.|++.+ .+.+|.+.+.+.+....... ..+........+.+.....+.....++.+.+..
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~~r~aa~----eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDTFRAAAV----EQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCTTCHHHH----HHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcccchhhH----HHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 8999999999999999999854 56677777754322100000 000000001124444444444555666666665
Q ss_pred HHhcCCCcCCCCCCeeEEEEeCCCCCC
Q 025758 117 MAKNRPIDTKGKRGFKVLVLNEVDKLS 143 (248)
Q Consensus 117 ~~~~~~~~~~~~~~~~viiiDE~d~l~ 143 (248)
... .+.+++|||-+..+.
T Consensus 371 a~~---------~~~DvVLIDTaGrl~ 388 (503)
T 2yhs_A 371 AKA---------RNIDVLIADTAGRLQ 388 (503)
T ss_dssp HHH---------TTCSEEEECCCCSCC
T ss_pred HHh---------cCCCEEEEeCCCccc
Confidence 443 134688999887664
No 212
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.00 E-value=1.5e-05 Score=74.59 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=35.8
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCc
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSK 172 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~ 172 (248)
++.++|+||| .+||+.....++++|.+... +..+|+++|+.+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~ 870 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV 870 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4689999999 89999999999999988743 4578888888653
No 213
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.99 E-value=3.5e-05 Score=77.01 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|+||||||||++|..++....
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999987653
No 214
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.98 E-value=1.2e-05 Score=74.63 Aligned_cols=53 Identities=26% Similarity=0.265 Sum_probs=40.9
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
++.++|+||| .+||......+++++.+... +..+|+++|+.+.+ ...+|+..+
T Consensus 751 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i--~~aDrii~L 805 (842)
T 2vf7_A 751 GGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV--AASDWVLDI 805 (842)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 4799999999 79999999999999988743 45788888876554 345665444
No 215
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.98 E-value=6.6e-06 Score=63.36 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 33 ~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
....++|.||+||||||+++.+++.+ |.+.+++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d 61 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEAD 61 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEccc
Confidence 33458999999999999999999866 44445443
No 216
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.96 E-value=1.1e-05 Score=62.44 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=26.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcC--CCcccceeccc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFG--PGAEKVKVENK 71 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~--~~~~~~~~~~~ 71 (248)
+.|.||+|+||||+++++++.+.. +..+.+..++.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 889999999999999999996542 23455555553
No 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.95 E-value=0.00032 Score=66.27 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHhhc-CCCCeeEEECCCCCCHHHHHHHHHH
Q 025758 16 IVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~-~~~~~ill~Gp~G~GKTtla~~ia~ 56 (248)
+|.+..++.|..++.. .....+.++|+.|+||||+|+.++.
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 8899999999988865 3334489999999999999999985
No 218
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.95 E-value=2.8e-05 Score=68.24 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=45.2
Q ss_pred Cee-EEEEeCC-CCCCH---HHHHHHHHHHHHhcC-CeeEEEEecCCC--cccHHHhhhh-heeeecCCCHHHHHHHHHH
Q 025758 130 GFK-VLVLNEV-DKLSR---EAQHSLRRTMEKYSA-SCRLILCCNSSS--KVTEAIRSRC-LNIRINSPTEEQIVKVLEF 200 (248)
Q Consensus 130 ~~~-viiiDE~-d~l~~---~~~~~ll~~le~~~~-~~~~Il~t~~~~--~~~~~l~sR~-~~i~~~~~~~~~~~~il~~ 200 (248)
.|. +++|||+ +.+.. .....+.++.....+ +..+|++|+++. .+...+++.+ ..|.|...+..+.+.++..
T Consensus 296 lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred CCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 344 8999999 44432 122333333343333 567888888887 3666677777 4678888888888877653
No 219
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.95 E-value=3.1e-05 Score=60.52 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=22.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
+++.|++|+||||++..+|..+...
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 9999999999999999999877443
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.95 E-value=0.0001 Score=63.48 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=22.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
+++.|++|+||||++..+|..+..
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987754
No 221
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.94 E-value=9.6e-06 Score=67.70 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+.+++.+...+++|..++++|.|++|+||||+++++|+.+.
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 44666777777788877899999999999999999999774
No 222
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=4.7e-05 Score=65.32 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++|.||+|+|||||++++++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7999999999999999999843
No 223
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.93 E-value=0.00014 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+++.||+||||||+|+.+|+.+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhcCC
Confidence 78999999999999999999763
No 224
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.92 E-value=8.4e-06 Score=71.80 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=45.9
Q ss_pred CCCccccc--c--cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 9 PKTLDQVI--V--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 9 p~~~~~li--g--~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
|.++.+++ | ...+.+.+...+..|. .+++.||+||||||+++++++ +..+..+.+.+.+.
T Consensus 233 ~~~~~~l~~~G~~~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~-~i~~~~giitied~ 296 (511)
T 2oap_1 233 PLTPIDLIEKGTVPSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMM-FIPPDAKVVSIEDT 296 (511)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGG-GSCTTCCEEEEESS
T ss_pred CCChhhHHhcCCCCHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHh-hCCCCCCEEEEcCc
Confidence 33455664 3 5667788888887664 388999999999999999998 55777787777664
No 225
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.92 E-value=3.5e-05 Score=58.90 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=34.3
Q ss_pred CCeeEEEEeCCCCC---CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHh
Q 025758 129 RGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178 (248)
Q Consensus 129 ~~~~viiiDE~d~l---~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~ 178 (248)
..++++||||+.+. +--....+++++...+...-+|+|++....-+-.+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 47899999999321 212234588888877777889999998765443333
No 226
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.90 E-value=2.2e-05 Score=67.34 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=41.3
Q ss_pred CCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 9 p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
+.+++++--.......|...+. .+...++++||+|+||||+++++++.+ .+..+.+...+.++
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPI 205 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccc
Confidence 4456665334444445555543 222238999999999999999999955 55667776665443
No 227
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.88 E-value=4.4e-06 Score=63.65 Aligned_cols=34 Identities=44% Similarity=0.657 Sum_probs=26.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
.++|.|||||||||+++.+++. ...+.+.+++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~ 44 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTH
T ss_pred EEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccc
Confidence 3889999999999999999983 455666666543
No 228
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.87 E-value=8.8e-06 Score=64.37 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=22.5
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCccc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEK 65 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~ 65 (248)
+++.||||+||||++..++..+.....+.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v 54 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPG 54 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 88999999999999988877654443333
No 229
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.86 E-value=9.7e-05 Score=60.61 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCC-CHHHHHHHHHHHHHHcCCCCCHHHHHHHH--------
Q 025758 148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP-TEEQIVKVLEFIAKKEGLQLPSGFATRLA-------- 218 (248)
Q Consensus 148 ~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~-~~~~~~~il~~~~~~~~~~~~~~~~~~l~-------- 218 (248)
....+.+++....+.+.+++--...-..++..- +.+++. .+.+++..+...+..+|. +...+.|.
T Consensus 79 ~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g---~~~~~~~~~~~~R~~l~~~~~~~g~---~~L~~~L~~~DP~~A~ 152 (322)
T 3exa_A 79 DLATPLITEIHERGRLPFLVGGTGLYVNAVIHQ---FNLGDIRADEDYRHELEAFVNSYGV---QALHDKLSKIDPKAAA 152 (322)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHT---CCCCCCBCCHHHHHHHHHHHHHSCH---HHHHHHHHTTCHHHHT
T ss_pred HHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcC---CcCCCCCCCHHHHHHHHHHHHhcCH---HHHHHHHHhhCHHHHh
Confidence 344566666544444444444433344444333 345454 345677777777766653 23333332
Q ss_pred HHccccHHHHHHHHHHHhhhcccc
Q 025758 219 EKSNRSLRRAILSFETCRVQQLRF 242 (248)
Q Consensus 219 ~~~~g~~r~~~~~l~~~~~~~~~~ 242 (248)
+....|.+.++..|+-....+.+.
T Consensus 153 ~i~pnd~~Ri~RALEV~~~TG~~~ 176 (322)
T 3exa_A 153 AIHPNNYRRVIRALEIIKLTGKTV 176 (322)
T ss_dssp TSCTTCHHHHHHHHHHHHHTC---
T ss_pred hcCcccHHHHHHHHHHHHHHCCCH
Confidence 123568899999998877666544
No 230
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.84 E-value=9.2e-05 Score=60.88 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
+++.||+|+||||++..+|..+ .+..+.+.+.+
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l-~~~g~kV~lv~ 139 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMF-VDEGKSVVLAA 139 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHH-HhcCCEEEEEc
Confidence 8999999999999999999865 44555555433
No 231
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.84 E-value=7.3e-05 Score=69.89 Aligned_cols=53 Identities=9% Similarity=0.176 Sum_probs=40.2
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+++++|+||| .+||+.....++++|.+... +..+|+++|+.+.+ ...+|+..+
T Consensus 866 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i--~~aDrIivL 920 (972)
T 2r6f_A 866 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI--KTADYIIDL 920 (972)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 4699999999 89999999999999988743 45788888876543 245555444
No 232
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.83 E-value=5.1e-06 Score=66.50 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++|.|+|||||||+++.+++.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999865
No 233
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.83 E-value=0.00036 Score=54.95 Aligned_cols=21 Identities=24% Similarity=0.467 Sum_probs=17.5
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.||+||||||++..+.-
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHHh
Confidence 489999999999987766653
No 234
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.82 E-value=0.00011 Score=68.92 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=40.5
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+++++|+||| .+||+.....++++|.+... +..+|+++++...+ ...+|+..+
T Consensus 884 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i--~~aDrIivL 938 (993)
T 2ygr_A 884 GRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI--KTSDWIIDL 938 (993)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 4699999999 89999999999999988743 45788888876543 345665444
No 235
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.81 E-value=1.6e-05 Score=62.19 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT 72 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~ 72 (248)
.++.+...+..|.. +.|.||+|+||||+++++++ +. + |.+.+ +..
T Consensus 12 ~l~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g-~~-p--G~i~~-g~~ 56 (218)
T 1z6g_A 12 SGLVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLN-EF-P--NYFYF-SVS 56 (218)
T ss_dssp ----------CCCC--EEEECSTTSSHHHHHHHHHH-HS-T--TTEEE-CCC
T ss_pred cccCCceecCCCCE--EEEECCCCCCHHHHHHHHHh-hC-C--CcEEE-eec
Confidence 34455556655543 66999999999999999999 44 4 66666 443
No 236
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.79 E-value=0.00044 Score=61.22 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=49.1
Q ss_pred eeEEEEeCCCCC----CHHHHHHHHHHHHHhcC-CeeEEEEecCCC--cccHHHhhhh-heeeecCCCHHHHHHHHH
Q 025758 131 FKVLVLNEVDKL----SREAQHSLRRTMEKYSA-SCRLILCCNSSS--KVTEAIRSRC-LNIRINSPTEEQIVKVLE 199 (248)
Q Consensus 131 ~~viiiDE~d~l----~~~~~~~ll~~le~~~~-~~~~Il~t~~~~--~~~~~l~sR~-~~i~~~~~~~~~~~~il~ 199 (248)
+-+++|||++.+ .......+.++.....+ +..+|++|..+. .+...+++-+ ..|.|...+..+...++.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 468999999655 33445556666665544 456888888887 6777888887 467788888888777774
No 237
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.79 E-value=1e-05 Score=66.56 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
+.|.||||+||||+++.+|+.+ .+.+|.+.+.+.+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l-~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDT 138 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeecc
Confidence 8899999999999999999954 56778887777543
No 238
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.79 E-value=1.3e-05 Score=60.02 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|+||+||||||+++.+++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999865
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.78 E-value=9.4e-05 Score=60.55 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|.||+|+||||++..+|..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998653
No 240
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.77 E-value=1.3e-05 Score=66.15 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++++||+||||||+++.+|+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999966
No 241
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.76 E-value=0.00014 Score=65.53 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=26.9
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~ 170 (248)
..+++||||+++++......++ +..+.+..+|++....
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll---~~l~~~~~liLvGD~~ 299 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLI---DALPDHARVIFLGDRD 299 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHH---HTCCTTCEEEEEECTT
T ss_pred CCCEEEEechhhCCHHHHHHHH---HhCCCCCEEEEEcchh
Confidence 5679999999999865544444 4445567888886544
No 242
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.75 E-value=0.00011 Score=56.18 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+++||.|+||||.+.-++....
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999988887663
No 243
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.75 E-value=1.9e-05 Score=68.71 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=33.8
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK 74 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~ 74 (248)
..+.|.||||+||||+++++++ +..+..|.+.++|..+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT-ALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH-HHCCCTTTCCCCCTTSC
T ss_pred ceEEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEEcc
Confidence 3478999999999999999998 67888999999887654
No 244
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.74 E-value=1.6e-05 Score=59.73 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=21.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|+|++||||||+++.++..+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999976
No 245
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.73 E-value=1.2e-05 Score=64.04 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
...+++.+...+..+. .+.|.||+||||||+++.+++.+
T Consensus 11 ~~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------------CCSE--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh
Confidence 4445666666665442 37799999999999999999965
No 246
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.73 E-value=0.00031 Score=56.23 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.7
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|.|+|||||||+++.++..+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999875
No 247
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.73 E-value=0.00014 Score=61.08 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
++++||||+||||+|..++..+...
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999866433
No 248
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.73 E-value=2.2e-05 Score=58.48 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 249
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.72 E-value=0.0002 Score=58.76 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=19.1
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
+++.||+|+||||+++.+++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999998874
No 250
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=2.8e-05 Score=59.70 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..+.+...+..+ ..++|.||+||||||+++.+++.+
T Consensus 14 ~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CC--CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344555555433 358999999999999999999976
No 251
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.72 E-value=2.7e-05 Score=58.91 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=22.1
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.++|+|++||||||+++.+|..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999977
No 252
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.72 E-value=4.5e-05 Score=62.85 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=27.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcC--CCccccee
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFG--PGAEKVKV 68 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~--~~~~~~~~ 68 (248)
.+.|.||+|+||||+++++++.+ . +.+|.+.+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l-~~~~~~G~i~v 115 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALL-SRWPEHRRVEL 115 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH-TTSTTCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-hhCCCCCeEEE
Confidence 38899999999999999999844 5 67777776
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.72 E-value=2.1e-05 Score=59.49 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|.||+|+||||+++.+++.+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999843
No 254
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.70 E-value=1.7e-05 Score=64.72 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++|.|||||||||+++.++..+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999865
No 255
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.68 E-value=2.2e-05 Score=60.38 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=20.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+.|.|||||||||+++++++.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3789999999999999999984
No 256
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.68 E-value=1.9e-05 Score=66.40 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
+.|.||||+||||+++.+|+.+ .+..|.+.+.+.+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDT 195 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCC
T ss_pred EEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecccc
Confidence 8999999999999999999954 56678887777543
No 257
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.66 E-value=4e-05 Score=58.92 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+.|.||+|+||||+++.+++.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999764
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.66 E-value=2.3e-05 Score=59.56 Aligned_cols=22 Identities=36% Similarity=0.754 Sum_probs=20.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|.||||+||||+++++++.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6799999999999999999843
No 259
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.65 E-value=9.4e-05 Score=60.57 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=20.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+++.||+||||||++..+|..+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 8899999999999999999865
No 260
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.65 E-value=4e-05 Score=62.88 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758 20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+++.+...+++|. .+.|+||+|+||||+++++++.+
T Consensus 114 ~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence 34555555555553 36799999999999999999954
No 261
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.64 E-value=0.00025 Score=58.67 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
++++||+|+||||++..+|..+ .+..+++-+.+
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l-~~~g~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYY-AELGYKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEe
Confidence 8899999999999999999865 44556655544
No 262
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.64 E-value=3.1e-05 Score=58.03 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.||+|+||||+++.+++.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 38999999999999999999865
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.64 E-value=3.3e-05 Score=57.99 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=21.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.+|+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999976
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.63 E-value=2.8e-05 Score=60.12 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=20.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|.||||+||||+++++++.+
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6799999999999999999943
No 265
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.62 E-value=3.3e-05 Score=59.35 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999976
No 266
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.62 E-value=0.00063 Score=57.30 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
++++||||+|||+++..++..+.
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHH
Confidence 88999999999999999987654
No 267
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.62 E-value=0.0025 Score=49.22 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
...+++++||+|.+. ......+.+++...+.+..+++.|..+..-...+.++.
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHH
Confidence 466899999998662 34444555566655556777777777665455554443
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.61 E-value=3.7e-05 Score=59.07 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=20.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|.||+|+||||+++++++.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999854
No 269
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.60 E-value=4.5e-05 Score=57.43 Aligned_cols=24 Identities=42% Similarity=0.683 Sum_probs=21.9
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.++|+|++||||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999876
No 270
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.60 E-value=0.00018 Score=60.18 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++++||||+|||+++..++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999754
No 271
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.59 E-value=0.00022 Score=56.32 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..+.+..++.. ..++++||+|+|||.++..++..+
T Consensus 98 Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 98 QEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 34445555543 248999999999999999888754
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.59 E-value=3.7e-05 Score=57.66 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=19.3
Q ss_pred eEEECCCCCCHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~ 56 (248)
++|.|+|||||||+++.++.
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 89999999999999999997
No 273
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.59 E-value=7.1e-05 Score=62.08 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
++++||||+|||+++..++.....
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHhHHHHHHHHHHhc
Confidence 899999999999999999976433
No 274
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.57 E-value=5.9e-05 Score=56.11 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
..+++|.|++||||||+++.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999999999999999774
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.57 E-value=4.4e-05 Score=60.66 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.9
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
..+.|.|||||||||+++.++..+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999997653
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.56 E-value=4.7e-05 Score=57.69 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=22.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|.|++||||||+++.++..+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999774
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.56 E-value=4.9e-05 Score=57.46 Aligned_cols=23 Identities=39% Similarity=0.795 Sum_probs=21.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999866
No 278
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.55 E-value=4.1e-05 Score=59.19 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|.||+||||||+++.+++.+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999955
No 279
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.55 E-value=5.7e-05 Score=57.07 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|+|++||||||+++.++..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999763
No 280
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.54 E-value=6.2e-05 Score=58.66 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=22.1
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|.|++||||||+++.++..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999976
No 281
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.54 E-value=4.8e-05 Score=63.70 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK 71 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~ 71 (248)
...+++.+ .-+..|. .+.|.||||+||||+++.+++ +..++.+.+.+.|.
T Consensus 58 g~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g-~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICN-GASADIIVLALIGE 107 (347)
T ss_dssp SCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHH-HSCCSEEEEEEESC
T ss_pred CCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCEEEEEEecc
Confidence 34566666 5555543 467999999999999999999 55667777666654
No 282
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.54 E-value=0.0005 Score=68.91 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
.++++||+||||||+|..++.+...
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k 1107 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQR 1107 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3999999999999999999976533
No 283
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.53 E-value=6.2e-05 Score=57.03 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.7
Q ss_pred CCeeEEECCCCCCHHHHHHHHHHH
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
...++|+|++||||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345999999999999999999986
No 284
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.53 E-value=4.8e-05 Score=58.88 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.||+|+||||+++.+++.+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48899999999999999999843
No 285
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.52 E-value=0.00029 Score=60.43 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++++|+|||||||+++.++..+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999998754
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.52 E-value=4.7e-05 Score=57.72 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|.|++||||||+++.++..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999774
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.52 E-value=4.7e-05 Score=57.84 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.++..+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999876
No 288
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.52 E-value=0.00012 Score=56.23 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.+.|++|+||||+++.+++.+
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999865
No 289
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.51 E-value=6.5e-05 Score=58.26 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|+||+||||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 290
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.51 E-value=5.1e-05 Score=58.31 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|.||+||||||+++.+++.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48899999999999999999843
No 291
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.51 E-value=2e-05 Score=61.92 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=25.5
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
+.|.||+|+||||+++++++ +..+..|.+.+++..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g-~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVT-ALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHH-HHSCCTTTC-------
T ss_pred EEEECCCCCCHHHHHHHHhc-ccccCCCeEEECCEEc
Confidence 45899999999999999998 5677788888877655
No 292
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.51 E-value=6.6e-05 Score=56.88 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|.|++|+||||+++.++..+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999774
No 293
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.50 E-value=9.5e-05 Score=56.71 Aligned_cols=24 Identities=38% Similarity=0.683 Sum_probs=21.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|.|++||||||+++.++..+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998763
No 294
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.49 E-value=3.4e-05 Score=64.41 Aligned_cols=38 Identities=32% Similarity=0.240 Sum_probs=30.4
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~ 73 (248)
..+.|.||||+||||+++++++. ..+.++.+.+.+.+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~-~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSL-LTAAGHKVAVLAVDP 93 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH-HHHTTCCEEEEEECG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh-hhhCCCEEEEEEEcC
Confidence 34889999999999999999984 466677777766544
No 295
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.49 E-value=6.5e-05 Score=58.32 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|+||+||||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999865
No 296
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.48 E-value=6.9e-05 Score=58.53 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|.||+||||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999866
No 297
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.48 E-value=0.00088 Score=51.21 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=32.7
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
...+++++||+|.+... ....+.+++...+.+..+++.|.....-...+.++.
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHH
Confidence 45679999999865322 233455555555556677777777665444554443
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.47 E-value=6.1e-05 Score=58.04 Aligned_cols=23 Identities=43% Similarity=0.715 Sum_probs=20.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.||+||||||+++.++..+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999999999999865
No 299
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.47 E-value=0.0012 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
++++||||+||||++.-++....
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999888876554
No 300
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.47 E-value=0.0021 Score=59.45 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=25.3
Q ss_pred CCCeeEEEEeCCCC--CCHHHHHHHHHHHHHhcCCeeEEEEe
Q 025758 128 KRGFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCC 167 (248)
Q Consensus 128 ~~~~~viiiDE~d~--l~~~~~~~ll~~le~~~~~~~~Il~t 167 (248)
..++.++||||++. ++......+++.+.....+..+|++|
T Consensus 206 l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~S 247 (773)
T 2xau_A 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMS 247 (773)
T ss_dssp CTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 45789999999974 55444455555555444455555554
No 301
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.47 E-value=0.00017 Score=58.77 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+.+.||+||||||+++.+++.+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999999663
No 302
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.47 E-value=7.5e-05 Score=55.65 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999976
No 303
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.46 E-value=0.00015 Score=57.46 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.8
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|+||+||||||+++.++..+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999866
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.46 E-value=5.3e-05 Score=57.04 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=18.1
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
..++|.|++||||||+++.++..+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3489999999999999999998663
No 305
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.46 E-value=8.4e-05 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.0
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|.|++||||||+++.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999876
No 306
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.45 E-value=8.1e-05 Score=56.50 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.++..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 307
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.45 E-value=8.1e-05 Score=57.34 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
.++|.|++||||||+++.++..+..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999997743
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.44 E-value=8.3e-05 Score=56.92 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=21.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999977
No 309
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.44 E-value=0.0001 Score=54.73 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=21.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999976
No 310
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.43 E-value=8.9e-05 Score=57.84 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
..++|.||+||||||+++.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999773
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.42 E-value=9.1e-05 Score=57.34 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=20.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++|.|||||||+|.|+.+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.42 E-value=7.3e-05 Score=55.59 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.||+||||||+++.+ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 544
No 313
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.42 E-value=0.00011 Score=56.33 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.1
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|.||+|+||||+++.+++..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 348999999999999999999853
No 314
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.42 E-value=0.0001 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|+|++||||||+++.+++.+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999999966
No 315
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.42 E-value=5.7e-05 Score=62.52 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=32.7
Q ss_pred CCeeEEECCCCCCHHHHHHHHHHHHc--------CCCcccceeccccee
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLRQVF--------GPGAEKVKVENKTWK 74 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~~l~--------~~~~~~~~~~~~~~~ 74 (248)
.+.++++|++|+||||+++.+++ .. .++.|.+.+++..+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~-~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILN-EQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHH-SCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred ccEEEEEecCCCCHHHHHHHHHh-hcCCCcEEEEEecCcccCccHHHHh
Confidence 45589999999999999999998 33 457888888887654
No 316
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.41 E-value=0.0015 Score=56.73 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=21.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+++.|+||+||||++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998664
No 317
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.41 E-value=0.00019 Score=59.38 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=20.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|.||+||||||+++.+++.+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999855
No 318
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.40 E-value=0.00013 Score=57.51 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=22.1
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|.|++||||||+++.++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999976
No 319
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.40 E-value=8.3e-05 Score=57.89 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=22.0
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|.|++||||||+++.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999977
No 320
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.39 E-value=0.00013 Score=58.13 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHhhc---CCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758 17 VHQDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 17 g~~~~~~~l~~~~~~---~~~~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
+...+++.+...+.. +. .+.|.|++|+||||+++.+++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence 445577777777665 43 58899999999999999999976
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.38 E-value=2.4e-05 Score=58.72 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=26.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCC---cccceecccc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPG---AEKVKVENKT 72 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~---~~~~~~~~~~ 72 (248)
.+.|.|++|+||||+++.+++.+ .+. .|.+.+++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~-~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL-RERGLRVAVVKRHAHG 42 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH-HHTTCCEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-hhcCCceEEEEEcCcc
Confidence 47899999999999999999955 444 6777777654
No 322
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.38 E-value=6.6e-05 Score=61.64 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=23.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCccccee---cccce
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV---ENKTW 73 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~---~~~~~ 73 (248)
.+.|.||||+||||+++++++ +..+..|.+.. .|++.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g-~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP-GLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST-TCCCC-------------C
T ss_pred eEEEECCCCCcHHHHHHHhcc-cccccccceecccCCCCCc
Confidence 377999999999999999998 67788888776 56543
No 323
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.38 E-value=6e-05 Score=64.57 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHH
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
++.+...+..|..+.+.|.||||+|||||++++++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 778888888888766889999999999999999984
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.37 E-value=0.00011 Score=60.68 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|.||+||||||+++++++.+
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhc
Confidence 8899999999999999999955
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.37 E-value=9.5e-05 Score=56.38 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.+++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999976
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.37 E-value=8.1e-05 Score=57.29 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=19.1
Q ss_pred eEEECCCCCCHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~ 56 (248)
+.|.||+||||||+++.+++
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999997
No 327
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.36 E-value=0.00013 Score=56.81 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++|.|||||||+|.|+.++..+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999976
No 328
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.34 E-value=0.0031 Score=48.52 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.0
Q ss_pred CCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758 32 QDCPHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 32 ~~~~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.+.+++.|++|+||||++..+++..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345669999999999999999999743
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.34 E-value=9.4e-05 Score=56.82 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.++|++||||||+++.+++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 378999999999999999998 5
No 330
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.34 E-value=0.005 Score=51.60 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=28.3
Q ss_pred CCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 128 KRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 128 ~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
.....++++||+|.+.. .....+..+....+....+|+.|..+..
T Consensus 143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 189 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD 189 (395)
T ss_dssp CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCH
Confidence 34667999999986543 2233444455544556777777777653
No 331
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.34 E-value=0.00013 Score=55.29 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++|.|++||||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 332
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.33 E-value=0.00011 Score=55.64 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.++..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999866
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.33 E-value=0.00013 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999865
No 334
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.33 E-value=0.00013 Score=56.98 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 335
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.32 E-value=0.00014 Score=55.35 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|.|++||||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 336
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.32 E-value=6.7e-05 Score=58.98 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=14.8
Q ss_pred eeEEECCCCCCHHHHHHHHH-HH
Q 025758 36 HLLFYGPPGSGKKTLIMALL-RQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia-~~ 57 (248)
.+.|.||+|+||||+++.++ +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 37799999999999999999 84
No 337
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.32 E-value=0.0029 Score=51.68 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=33.0
Q ss_pred CCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
..-++++|||+|.|.. .....+..++...+.+..+|++|.....-...+...+
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 3567999999987643 2334444555555566778888777765444444443
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.32 E-value=9.8e-05 Score=57.85 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.8
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|.|++||||||+++.++..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999865
No 339
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.32 E-value=0.00013 Score=59.84 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=25.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCccccee---cccce
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV---ENKTW 73 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~---~~~~~ 73 (248)
+.|.||||+|||||+++++ +..+..|.+.. .|++.
T Consensus 168 ~~l~G~sG~GKSTLln~l~--~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT--GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH--SCCCCCSCC---------C
T ss_pred EEEECCCCCCHHHHHHHHH--HhhCcccccccccCCCCCc
Confidence 7899999999999999999 56777888877 66543
No 340
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.31 E-value=0.00061 Score=67.45 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=20.4
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
++++||||||||++|+.++.+-
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 8999999999999999999754
No 341
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.31 E-value=0.0054 Score=46.73 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCeeEEEEeCCCCCC-HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758 129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180 (248)
Q Consensus 129 ~~~~viiiDE~d~l~-~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR 180 (248)
....++++||+|.+. ......+.+++...+.+..+++.|.....-...+.++
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 197 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNS 197 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHH
Confidence 466799999998543 3334445555555555667777777665444444443
No 342
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.30 E-value=0.0026 Score=51.94 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=24.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCccccee
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~ 68 (248)
+++.|++|+||||++..+|..+ .+..+.+.+
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~-~~~g~~v~l 131 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFY-KKKGFKVGL 131 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHH-HHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCeEEE
Confidence 8889999999999999999865 344444443
No 343
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.30 E-value=0.00013 Score=56.68 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=21.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.|++||||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.29 E-value=0.00013 Score=56.32 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
.++|.|++||||||+++.++..+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999997643
No 345
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.29 E-value=0.0029 Score=51.02 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
....++|+||++.+... .+..++........+++.|..+.
T Consensus 224 ~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lSATp~ 263 (282)
T 1rif_A 224 SQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLSGSLR 263 (282)
T ss_dssp GGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEECSSCC
T ss_pred hhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEeCCCC
Confidence 36789999999988854 44555555444566777766664
No 346
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.28 E-value=0.00015 Score=57.92 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|.||+||||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999655
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.28 E-value=0.00017 Score=55.59 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.4
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
..++|.|++||||||+++.++..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999999764
No 348
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.27 E-value=0.0039 Score=48.25 Aligned_cols=53 Identities=9% Similarity=0.249 Sum_probs=33.1
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
....++++||+|.+... ....+.+++...+....+++.|.....-...+.+++
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 207 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKF 207 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHH
Confidence 45679999999865332 234455566655556677777777665444554444
No 349
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.26 E-value=0.00021 Score=63.37 Aligned_cols=53 Identities=23% Similarity=0.390 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce-eccc
Q 025758 19 QDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK-VENK 71 (248)
Q Consensus 19 ~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~-~~~~ 71 (248)
.++.+.++...+. .+...+.|+|++||||||+++++++.+.....+.+. +++.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 3455555554321 122348899999999999999999976433322443 4443
No 350
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.26 E-value=0.00018 Score=55.75 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758 16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
-.+++..+.+.......+.+.+++.|++|+||||++..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3456666777777666666779999999999999999999875
No 351
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.25 E-value=0.00072 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+++||.|+||||.+.-.+....
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~ 53 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQ 53 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999988887653
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.24 E-value=0.00019 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
..+|+||||+||||++.+|+..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 378999999999999999998543
No 353
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.24 E-value=0.0013 Score=56.30 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=25.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
+++.|++|+||||++..+|..+. +..+.+.+.+
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd 133 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVA 133 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEee
Confidence 88899999999999999999664 4455554433
No 354
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.24 E-value=0.00024 Score=60.01 Aligned_cols=23 Identities=52% Similarity=0.638 Sum_probs=21.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|+||||+||||+++++++.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48899999999999999999854
No 355
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.23 E-value=0.0002 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.8
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|.|++|+||||+++.+++.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999999763
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.23 E-value=0.0002 Score=54.37 Aligned_cols=21 Identities=38% Similarity=0.808 Sum_probs=19.4
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
++|+||+|+||||+++.+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999998874
No 357
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.23 E-value=0.00015 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.5
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..++|.|++||||||+++.++..+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999854
No 358
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.23 E-value=0.00013 Score=61.48 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGA 63 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~ 63 (248)
+.|.||+|+||||+++++++ +..+..
T Consensus 173 ~~IvG~nGsGKSTLlk~L~g-l~~~~~ 198 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAA-VFNTTS 198 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHH-HTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHH-HhCCCc
Confidence 88999999999999999999 556555
No 359
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.22 E-value=0.0058 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.5
Q ss_pred CeeEEECCCCCCHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
..++|.|++|+||||++..+.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 34999999999999999999873
No 360
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.21 E-value=0.00022 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|.||+||||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 361
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.19 E-value=0.0013 Score=51.52 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=25.9
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecC
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~ 169 (248)
.+++|+|||+..+.. ...+.+.+.+ .+..+|++.-+
T Consensus 90 ~~dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp TCSEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred cCCEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 467999999988863 5556666665 45678888766
No 362
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.19 E-value=0.0015 Score=50.80 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=32.6
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR 180 (248)
...+++++||+|.+... ....+.+++.....+..+++.|.....-...+..+
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 218 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS 218 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHH
Confidence 45679999999865432 24455566666666677777777665444444333
No 363
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.18 E-value=6e-05 Score=63.20 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=23.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcC-CCcccceec
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKVE 69 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~-~~~~~~~~~ 69 (248)
.+.|.||||+|||||++++++ +.. +..|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g-~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLG-LQNEILTNDVSNV 250 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-CSSCCCCC-----
T ss_pred EEEEECCCCccHHHHHHHHhc-cccccccCCcccc
Confidence 478999999999999999998 445 666666543
No 364
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.17 E-value=0.00055 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=18.9
Q ss_pred eEEECCCCCCHH-HHHHHHHHHH
Q 025758 37 LLFYGPPGSGKK-TLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKT-tla~~ia~~l 58 (248)
.+++||.|+||| .|++++....
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 789999999999 7888877754
No 365
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.16 E-value=0.00094 Score=59.79 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
|..++..+...+..++ .++++.+|+|+|||.++-.++..+..
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence 5555555555444433 45889999999999998888876643
No 366
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.15 E-value=0.00032 Score=53.80 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.6
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+.|.|++||||||+++.+++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999763
No 367
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.12 E-value=0.0038 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
++++|++|+||||++-.+|..+...
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999877443
No 368
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.12 E-value=0.0023 Score=48.87 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHH
Q 025758 17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
+++...+.+.+.....+...+++.|++|+||||+++.+...
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34455555555544444445999999999999999999863
No 369
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.11 E-value=0.00054 Score=53.26 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
++...+.++..+...+.+.+++.|++|+||||++..++...+.
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3445566666666666666999999999999999999987643
No 370
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.10 E-value=0.0032 Score=50.32 Aligned_cols=50 Identities=14% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHh
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~ 178 (248)
.+.+++++||+|.+... ....+..++...+....+++.|.....-...+.
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~ 250 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLA 250 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHH
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHH
Confidence 35679999999875432 234455555655566777777776664444443
No 371
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.09 E-value=0.0002 Score=55.15 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.7
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
+.+.|++|+||||+++.+++.
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999984
No 372
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00029 Score=53.81 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=19.9
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+.|+|++||||||+++.+++
T Consensus 10 ~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999998
No 373
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.07 E-value=0.00036 Score=54.86 Aligned_cols=24 Identities=38% Similarity=0.695 Sum_probs=21.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|.||+|+||||+++.+++.+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999764
No 374
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.07 E-value=0.0042 Score=46.08 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.5
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+++
T Consensus 6 ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999986
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.06 E-value=0.00012 Score=56.44 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+.|.|++||||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999763
No 376
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.06 E-value=0.0028 Score=53.09 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=28.4
Q ss_pred CCeeEEEEe-CC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 129 RGFKVLVLN-EV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 129 ~~~~viiiD-E~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
.+.-++++| +. ..++...+..++..+.....+.++|++.|..+.
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 366788888 54 456767666666666553335678888876553
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.05 E-value=0.0005 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+.+.|.|++||||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 34588999999999999999998764
No 378
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.05 E-value=0.012 Score=49.69 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=27.4
Q ss_pred CCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 129 ~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
....++++||+|.+. ......+..++.....+..+|+.|..+..
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 212 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 212 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH
Confidence 467899999998552 22333444455544556677777776653
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.05 E-value=0.00036 Score=55.52 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.|.|.|++||||||+++.++..+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999998663
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.03 E-value=0.0004 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.6
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.|+|++||||||+++.++..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999864
No 381
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.02 E-value=0.00036 Score=56.90 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.8
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
++|.|+|||||||+++.++..
T Consensus 5 I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999984
No 382
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.99 E-value=0.00042 Score=53.76 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.7
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+.|.|++||||||+++.+++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999997
No 383
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.99 E-value=0.0009 Score=58.71 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 16 IVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 16 ig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
+...++.+.+.+..++ .....++|.|.+||||||+++++|+.|..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3456677777777643 12234999999999999999999998853
No 384
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.99 E-value=0.0031 Score=54.17 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=25.0
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecC
Q 025758 131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169 (248)
Q Consensus 131 ~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~ 169 (248)
.+++|+||+.+++......++..+. ...+|++...
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~ 269 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDT 269 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCc
Confidence 6799999999999877766665543 2556666543
No 385
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.98 E-value=0.00043 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999984
No 386
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.97 E-value=0.0055 Score=48.04 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCeeEEEEeCCCCCCH-HHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~-~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
...+++++||+|.+.. .....+.+++........+|++|.....-...+..++
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF 225 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHH
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHH
Confidence 3567999999986532 2234455666665566778887777664444444443
No 387
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.96 E-value=0.00064 Score=51.04 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+.+.|.|++|+||||+++.+++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 34589999999999999999998653
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.96 E-value=0.00057 Score=49.91 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.1
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
.+|+||||+||||++.++.-.+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999875644
No 389
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.96 E-value=0.00039 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+++.|++|+||||+++.+++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999843
No 390
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.96 E-value=0.0011 Score=55.81 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+.+.-.+.-++...++++||+|+||||+++.+++.+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3444444555556799999999999999999998664
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.94 E-value=0.00027 Score=55.53 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.7
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
+.|.|++|+||||+++.+++.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999983
No 392
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.93 E-value=0.011 Score=51.90 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++|+|++|+||||++..+|..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998664
No 393
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.92 E-value=0.045 Score=43.14 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.5
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.++|.|++|+||||++..+.+
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 499999999999999999886
No 394
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.91 E-value=0.056 Score=46.47 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+.+.|+||+|||||++.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 395
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.0046 Score=56.66 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=17.7
Q ss_pred CeeEEECCCCCCHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALL 55 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia 55 (248)
.++++.||+|+|||+.+-..+
T Consensus 47 ~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHH
Confidence 459999999999999985544
No 396
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.90 E-value=0.0053 Score=53.36 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=29.3
Q ss_pred CCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCCeeEEEEecCCCccc
Q 025758 129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVT 174 (248)
Q Consensus 129 ~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~ 174 (248)
....+++|||+|.+. ......+..++.....+..+|+.|..+..-.
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 281 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 281 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHH
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHH
Confidence 467799999998552 2333444455555555677888877766433
No 397
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.90 E-value=0.00079 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|.|++||||||+++.+++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999866
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.88 E-value=0.00057 Score=56.77 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+++.||+||||||+++.+|..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 48899999999999999999976
No 399
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.86 E-value=0.0059 Score=47.13 Aligned_cols=53 Identities=8% Similarity=0.159 Sum_probs=32.5
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
...+++++||+|.+... ....+.++++..+.+..+++.|.....-...+..+.
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 202 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY 202 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH
Confidence 35678999999866432 233455555655556667777766665444555544
No 400
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.86 E-value=0.00044 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.++|.||+|+||||+|..+++.
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999974
No 401
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.85 E-value=0.006 Score=45.57 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=20.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 402
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.84 E-value=0.0012 Score=55.26 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=26.5
Q ss_pred CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN 70 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~ 70 (248)
.+.+.|.|+||+||||+.+.+++.+ .+..+++.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~-~~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML-TERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-hhcCCeEEEEe
Confidence 3449999999999999999999854 33344444433
No 403
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.82 E-value=0.0096 Score=52.29 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=28.0
Q ss_pred CCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
....++|+||++.+.. .....+..++.....+..+|+.|..+..
T Consensus 258 ~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~ 303 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE 303 (508)
T ss_dssp TTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCST
T ss_pred cCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH
Confidence 4677999999986542 2333444555555556777777777654
No 404
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.80 E-value=0.0044 Score=53.33 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.0
Q ss_pred CeeEEECCCCCCHHHHH-HHHH
Q 025758 35 PHLLFYGPPGSGKKTLI-MALL 55 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla-~~ia 55 (248)
.++++.||+|+|||..+ ..+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999986 4444
No 405
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.80 E-value=0.00087 Score=52.86 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
...+++++||+|.+... ....+..+++..+.+..+++.|.....-...+..+.
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 46679999999866432 244455566655566777777776654444444443
No 406
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.80 E-value=0.00012 Score=60.15 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=19.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcCCCccccee
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV 68 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~ 68 (248)
.+.|.||||+|||||++++++ +..+..|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g-~~~~~~G~I~~ 206 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISP-ELGLRTNEISE 206 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC------------
T ss_pred EEEEECCCCCCHHHHHHHhcc-cccccccceee
Confidence 388999999999999999998 44566666655
No 407
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.79 E-value=0.0083 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999863
No 408
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.77 E-value=0.0005 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.++|.||+||||||++..+|+.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 48999999999999999999865
No 409
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.76 E-value=0.00095 Score=51.64 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=25.0
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN 168 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~ 168 (248)
+..+|+|||+..++++....+.++.+ .+.++|+..-
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~GL 136 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAGL 136 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEEE
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEeec
Confidence 56799999999999765555555553 3456666643
No 410
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.76 E-value=0.0099 Score=44.45 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.7
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
+++.|++|+||||++..+++.
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 411
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.75 E-value=0.03 Score=46.85 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=28.4
Q ss_pred CCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
....++++||+|.+.. .....+.+++...+....+|+.|..+..
T Consensus 151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 196 (391)
T 1xti_A 151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 196 (391)
T ss_dssp TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCS
T ss_pred cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCH
Confidence 4667999999986642 4445555566555555667777666543
No 412
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0022 Score=48.23 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=20.7
Q ss_pred CeeEEECCCCCCHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
..+++.|++|+||||++..+.+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999873
No 413
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.73 E-value=0.03 Score=54.10 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHH
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~ 56 (248)
|..++..+...+..++...++++||.|+|||..+...+-
T Consensus 608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence 555666666655566666799999999999998876554
No 414
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.72 E-value=0.015 Score=49.89 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCCeeEEEEeCCCCCCH-HHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 128 KRGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 128 ~~~~~viiiDE~d~l~~-~~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
.....++|+||++.+.. .....+.+.+........+++.|..+.
T Consensus 123 ~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG 167 (494)
T ss_dssp TTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred hhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 34667999999987752 234445555555555566777766664
No 415
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.72 E-value=0.0041 Score=49.27 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=32.4
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~ 181 (248)
...+++++||+|.+... ....+.++++..+....+++.|.....-...+.+++
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 35679999999865332 233455566655556667777776665444554443
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.71 E-value=0.00079 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.|.|+|++||||||+++.++. +
T Consensus 77 iI~I~G~~GSGKSTva~~La~-l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN-L 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHH-C
Confidence 389999999999999999995 5
No 417
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.70 E-value=0.0093 Score=46.43 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=30.3
Q ss_pred CCeeEEEEeCCCCCCHH--HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758 129 RGFKVLVLNEVDKLSRE--AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~--~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR 180 (248)
...+++++||+|.+... -...+..+++..+....+++.|.....-...+..+
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~ 218 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTK 218 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTT
T ss_pred ccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHH
Confidence 35679999999865221 23444555555555566777766655434444444
No 418
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.70 E-value=0.052 Score=45.58 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=25.5
Q ss_pred CCeeEEEEeCCCCCC-HHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 129 ~~~~viiiDE~d~l~-~~~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
....++++||+|.+. ......+..++........+++.|....
T Consensus 162 ~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 205 (400)
T 1s2m_A 162 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP 205 (400)
T ss_dssp TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC
Confidence 456899999998554 3333334444444444556666665554
No 419
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.70 E-value=0.0024 Score=57.89 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
++...+.+...+... +..++.||||||||+++-.+..++..+
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 666777777776532 347899999999998766666556543
No 420
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.70 E-value=0.012 Score=43.44 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.4
Q ss_pred CCeeEEECCCCCCHHHHHHHHHH
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~ 56 (248)
...+++.|++|+||||+++.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34599999999999999999986
No 421
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.0064 Score=44.89 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.2
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999875
No 422
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.67 E-value=0.0012 Score=50.76 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=22.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
.+|+||||+||||++.+|.-.+..+
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g~ 50 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYWP 50 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 7899999999999999999777653
No 423
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.67 E-value=0.018 Score=50.41 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+.+..++.. ...++.||+|+|||..+..++....
T Consensus 119 ~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 119 KDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp HHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 3344444433 3589999999999999987776543
No 424
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.67 E-value=0.011 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3999999999999999999874
No 425
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.67 E-value=0.00091 Score=49.89 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.6
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.++|.|++|+||||+|..+..
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 499999999999999999986
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.66 E-value=0.01 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=20.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999999974
No 427
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.66 E-value=0.014 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3999999999999999999873
No 428
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.66 E-value=0.0066 Score=60.27 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=19.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+.++||+||||||+|..++.+.
T Consensus 1434 iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A 1434 VEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8999999999999998888654
No 429
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.65 E-value=0.0039 Score=57.16 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=18.4
Q ss_pred CeeEEECCCCCCHHHHHH-HHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIM-ALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~-~ia~~l 58 (248)
.++++.||+|+|||+.+. .+...+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 459999999999999984 444333
No 430
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.64 E-value=0.0059 Score=50.61 Aligned_cols=44 Identities=14% Similarity=0.328 Sum_probs=28.0
Q ss_pred CCeeEEEEeCCCCCC-HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758 129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSK 172 (248)
Q Consensus 129 ~~~~viiiDE~d~l~-~~~~~~ll~~le~~~~~~~~Il~t~~~~~ 172 (248)
....++++||+|.+. ......+.+++........+++.|..+..
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 190 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR 190 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCH
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCH
Confidence 456799999997653 22234455555555556677777776653
No 431
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.64 E-value=0.0012 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=21.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|+|++||||||+++.++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999865
No 432
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.64 E-value=0.0013 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.5
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
.+.|.|++|+||||.++.++..+..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3889999999999999999998754
No 433
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.63 E-value=0.0015 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.2
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+.|.|+|||||||.++.++..+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999773
No 434
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.62 E-value=0.00091 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.4
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 388999999999999999986
No 435
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.62 E-value=0.022 Score=42.50 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.4
Q ss_pred CCeeEEECCCCCCHHHHHHHHHH
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+.+++.|++|+||||+++.+.+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHc
Confidence 34599999999999999999886
No 436
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.012 Score=43.32 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3999999999999999999873
No 437
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.0067 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+++.|++|+||||+++.+.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 39999999999999999999754
No 438
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.58 E-value=0.0014 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.4
Q ss_pred CeeEEECCCCCCHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
+.+++.|++|+||||+++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.57 E-value=0.00076 Score=54.96 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=18.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+.+.||+||||||+++.++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999998663
No 440
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.57 E-value=0.0022 Score=57.27 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=27.8
Q ss_pred HHHHHHHHhh-cCCCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758 21 IAQNLKKLVT-EQDCPH-LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 21 ~~~~l~~~~~-~~~~~~-ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+.+.++...+ .+..+. ++|+|++||||||+|+.++..+.
T Consensus 381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3444444442 233333 89999999999999999999874
No 441
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.56 E-value=0.0018 Score=50.62 Aligned_cols=27 Identities=30% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 33 DCPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 33 ~~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+...+.|.|++|+||||+++.++..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334489999999999999999999774
No 442
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.56 E-value=0.024 Score=43.46 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.3
Q ss_pred CCCCeeEEECCCCCCHHHHHHHHHH
Q 025758 32 QDCPHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 32 ~~~~~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+.+.+++.|++|+||||++..+.+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3445699999999999999999876
No 443
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.56 E-value=0.0013 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=22.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.+.|.|++|+||||.++.++..+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999774
No 444
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.55 E-value=0.021 Score=44.73 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=29.9
Q ss_pred CCeeEEEEeCCCCCCH----HHHHHHHHHHHHh-cCCeeEEEEecCCCcccHHHhh
Q 025758 129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKY-SASCRLILCCNSSSKVTEAIRS 179 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~----~~~~~ll~~le~~-~~~~~~Il~t~~~~~~~~~l~s 179 (248)
.+..++++||+|.+.. .....+.+++... .....+++.|.....-...+..
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~ 229 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCK 229 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHH
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHH
Confidence 4567999999987754 2344455555543 2345667776666543334433
No 445
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.54 E-value=0.0025 Score=49.84 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR 180 (248)
....++++||+|.+... ....+.++++..+....+++.|.....-...+.+.
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHH
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHH
Confidence 35679999999865322 23455566666555666777776665544444443
No 446
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.53 E-value=0.018 Score=43.96 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=19.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999863
No 447
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.52 E-value=0.0043 Score=51.93 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 33 DCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 33 ~~~~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
+.+.+.|+|++|+||||++..++..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445999999999999999999987643
No 448
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.52 E-value=0.13 Score=41.81 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=39.7
Q ss_pred CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccH-----HHhhhh----heeeecCCCHHHHHHHHHH
Q 025758 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE-----AIRSRC----LNIRINSPTEEQIVKVLEF 200 (248)
Q Consensus 130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~-----~l~sR~----~~i~~~~~~~~~~~~il~~ 200 (248)
+--++++|=-+.+... ...+++.+.+...+.++|++.|..+...+ ...... ..+.....+...+..++..
T Consensus 88 d~il~VvD~~~~~~~~-~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~ 166 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKAD 166 (301)
T ss_dssp SEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEEEECCCCCChH-HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHH
Confidence 5567777755655544 34555666654334667777777654321 111111 2345555556666666665
Q ss_pred HHH
Q 025758 201 IAK 203 (248)
Q Consensus 201 ~~~ 203 (248)
+..
T Consensus 167 l~~ 169 (301)
T 1wf3_A 167 LLA 169 (301)
T ss_dssp HHT
T ss_pred HHH
Confidence 554
No 449
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.51 E-value=0.0012 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=19.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.|.|.|++|+||||.++.+++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999873
No 450
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.50 E-value=0.052 Score=40.80 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.0
Q ss_pred CeeEEECCCCCCHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~ 56 (248)
..+++.|++|+||||+++.+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3499999999999999986665
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.50 E-value=0.0012 Score=49.47 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=19.0
Q ss_pred eEEECCCCCCHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~ 56 (248)
+++.|++|+||||+++.+++
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999986
No 452
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.019 Score=42.99 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 453
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.50 E-value=0.0048 Score=44.90 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=40.3
Q ss_pred CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758 130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI 184 (248)
Q Consensus 130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i 184 (248)
+|+++++||| .++|+.....+.+.+.+... +..+|++||+. .+ ..+.+|+..+
T Consensus 81 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~-~~~~d~ii~l 135 (148)
T 1f2t_B 81 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-EL-KDAADHVIRI 135 (148)
T ss_dssp SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GG-GGGCSEEEEE
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HH-HHhCCEEEEE
Confidence 5789999999 89999999999999988643 45678888876 43 3455555444
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0014 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
.+.|.|+.||||||+++.++..+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 38899999999999999999976
No 455
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.47 E-value=0.0014 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.5
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999986
No 456
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.46 E-value=0.0085 Score=53.97 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=27.1
Q ss_pred CCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-CCeeEEEEecCCC
Q 025758 129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS 171 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~-~~~~~Il~t~~~~ 171 (248)
.+..++||||+|.++......+..+++... .+..+|+.|..+.
T Consensus 276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~ 319 (618)
T 2whx_A 276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP 319 (618)
T ss_dssp CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCT
T ss_pred cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCc
Confidence 467899999999997654444433333322 4566777765553
No 457
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.45 E-value=0.022 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.4
Q ss_pred CeeEEECCCCCCHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
+.+.+.|++|+||||+++.+++.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 34889999999999999999873
No 458
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.44 E-value=0.0092 Score=50.43 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=28.7
Q ss_pred CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
....++++||+|.+... ....+..++.....+..+|+.|..+.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 34679999999865322 23455666666666677888877764
No 459
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.43 E-value=0.0032 Score=53.43 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=55.8
Q ss_pred CCeeEEEEeCCCCCC----HHHHHHHHHHHHHhcC-CeeEEEEecCCCccc--------HHHhhhhheeeecCCCHHHHH
Q 025758 129 RGFKVLVLNEVDKLS----REAQHSLRRTMEKYSA-SCRLILCCNSSSKVT--------EAIRSRCLNIRINSPTEEQIV 195 (248)
Q Consensus 129 ~~~~viiiDE~d~l~----~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~--------~~l~sR~~~i~~~~~~~~~~~ 195 (248)
..+.++++||++.+- +.....+.+.+.+.++ +..++++|+++..+. .++.+.|...-|-+.+..+..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~~~~~~ 340 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGEKDLE 340 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCCHHHHH
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCChhhHH
Confidence 457899999996553 4455666666666544 457888899988765 367777754333344455543
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758 196 KVLEFIAKKEGLQLPSGFATRLAEKSNR 223 (248)
Q Consensus 196 ~il~~~~~~~~~~~~~~~~~~l~~~~~g 223 (248)
.+.. .+.++++..+.|.....|
T Consensus 341 ~~~~------~~~ls~~e~~~l~~~~~G 362 (392)
T 4ag6_A 341 AITT------LMNLSEAEHDLLVNAKRG 362 (392)
T ss_dssp HHHH------HTTCCHHHHHHHHTCCTT
T ss_pred HHHH------HhCCCHHHHHhccCCCCc
Confidence 3322 234678888777655433
No 460
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.42 E-value=0.0016 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.3
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
+++.||+||||||++..+|..+.
T Consensus 5 i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEECcchhhHHHHHHHHHHHCC
Confidence 78999999999999999999773
No 461
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.41 E-value=0.0035 Score=55.57 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhc-CCCC-eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 19 QDIAQNLKKLVTE-QDCP-HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 19 ~~~~~~l~~~~~~-~~~~-~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++.+.+....++ ++.+ .++|+|++||||||+++.+++.+.
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4566777777632 2223 389999999999999999999774
No 462
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.38 E-value=0.0022 Score=46.87 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.1
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 463
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.37 E-value=0.017 Score=43.73 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999873
No 464
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.36 E-value=0.0022 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.5
Q ss_pred eEEECCCCCCHHHHHHHHHHHHc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
++++|.||+||||+++.++..+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998774
No 465
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.36 E-value=0.00053 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.0
Q ss_pred CeeEEECCCCCCHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~ 56 (248)
..+.|.|++|+||||+++.+++
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3499999999999999999986
No 466
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.35 E-value=0.0027 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.5
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
..+.|.|++|+||||.++.++..+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3489999999999999999999874
No 467
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.34 E-value=0.00075 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..|+|.|+.||||||+++.++..+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 348999999999999999999865
No 468
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.33 E-value=0.0025 Score=46.39 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999998863
No 469
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.33 E-value=0.0063 Score=54.91 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
++.....+...+.. +..++.||||||||+++..++..+..
T Consensus 182 n~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 55556666665532 45889999999999999888877654
No 470
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.32 E-value=0.0022 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.4
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVFG 60 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~~ 60 (248)
.|.|.|++|+||||.++.++..+..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999998743
No 471
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.32 E-value=0.0027 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.3
Q ss_pred eeEEECCCCCCHHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l 58 (248)
..+|+||||+||||++.+++...
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhc
Confidence 37899999999999999999743
No 472
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.31 E-value=0.014 Score=53.40 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCeeEEEEeCCCCCCH----HHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~----~~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
.+..++|+||++.+.. .....++..+........+|+.|....
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~ 183 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP 183 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC
Confidence 3667999999987642 233445555554455677777776654
No 473
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.30 E-value=0.031 Score=45.60 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.9
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
++++.+|+|+|||..+...+-
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHH
Confidence 599999999999998766664
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.28 E-value=0.0022 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999874
No 475
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.28 E-value=0.0029 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred CCeeEEECCCCCCHHHHHHHHHH
Q 025758 34 CPHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 34 ~~~ill~Gp~G~GKTtla~~ia~ 56 (248)
...+++.|++|+||||+++.+.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44599999999999999999986
No 476
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.27 E-value=0.0022 Score=55.22 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.7
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.++++|++|+||||++..+|..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998663
No 477
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.27 E-value=0.0046 Score=50.90 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.9
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGP 61 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~ 61 (248)
+++.|+||+||||++..+|......
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~ 95 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDN 95 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999766443
No 478
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.26 E-value=0.0028 Score=46.33 Aligned_cols=22 Identities=18% Similarity=0.526 Sum_probs=20.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999874
No 479
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.26 E-value=0.0028 Score=46.33 Aligned_cols=21 Identities=19% Similarity=0.596 Sum_probs=19.4
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
+++.|++|+||||+++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999863
No 480
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.26 E-value=0.0028 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999863
No 481
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.25 E-value=0.0021 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.1
Q ss_pred CCCeeEEECCCCCCHHHHHHHHHH
Q 025758 33 DCPHLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 33 ~~~~ill~Gp~G~GKTtla~~ia~ 56 (248)
+...+++.|++|+||||+++.+.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445699999999999999999986
No 482
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.24 E-value=0.0018 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.7
Q ss_pred eEEECCCCCCHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~ 57 (248)
+++.|+||+|||+++.-+|..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999887643
No 483
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.23 E-value=0.003 Score=46.63 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.6
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
No 484
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.22 E-value=0.0031 Score=46.19 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.9
Q ss_pred eeEEECCCCCCHHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~ 57 (248)
.+++.|++|+||||+++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999863
No 485
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.22 E-value=0.0029 Score=46.60 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.3
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 489999999999999999875
No 486
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.22 E-value=0.0032 Score=47.51 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.6
Q ss_pred CeeEEECCCCCCHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
..+++.|++|+||||+++.+.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34999999999999999999974
No 487
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.22 E-value=0.033 Score=45.51 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=19.0
Q ss_pred eEEECCCCCCHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~ 56 (248)
+.+.|++|+|||||+..+.+
T Consensus 13 v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 99999999999999999886
No 488
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.20 E-value=0.013 Score=50.60 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=23.9
Q ss_pred CCeeEEEEeCCCCCCHHHHHHHHHHHHH--hcCCeeEEEEecCC
Q 025758 129 RGFKVLVLNEVDKLSREAQHSLRRTMEK--YSASCRLILCCNSS 170 (248)
Q Consensus 129 ~~~~viiiDE~d~l~~~~~~~ll~~le~--~~~~~~~Il~t~~~ 170 (248)
.+..++||||+|.++..... ++..+.. ...+..+|+.|..+
T Consensus 109 ~~~~~iViDEah~~~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~ 151 (451)
T 2jlq_A 109 PNYNLIVMDEAHFTDPCSVA-ARGYISTRVEMGEAAAIFMTATP 151 (451)
T ss_dssp CCCSEEEEETTTCCSHHHHH-HHHHHHHHHHTTSCEEEEECSSC
T ss_pred cCCCEEEEeCCccCCcchHH-HHHHHHHhhcCCCceEEEEccCC
Confidence 36679999999988654333 2222221 22345666666544
No 489
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.20 E-value=0.0032 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.3
Q ss_pred CeeEEECCCCCCHHHHHHHHHHH
Q 025758 35 PHLLFYGPPGSGKKTLIMALLRQ 57 (248)
Q Consensus 35 ~~ill~Gp~G~GKTtla~~ia~~ 57 (248)
..+++.|++|+||||+++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34999999999999999999863
No 490
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.20 E-value=0.071 Score=44.94 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCeeEEEEeCCCCCC-HHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758 129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS 171 (248)
Q Consensus 129 ~~~~viiiDE~d~l~-~~~~~~ll~~le~~~~~~~~Il~t~~~~ 171 (248)
...+++++||+|.+. ......+.+++...+....+++.|..+.
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 221 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 221 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC
Confidence 456799999998543 3334555666665555667777776654
No 491
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.19 E-value=0.003 Score=56.76 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.|+|+|.+||||||+++.++..+.
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999773
No 492
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.18 E-value=0.0033 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.5
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999986
No 493
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.17 E-value=0.0032 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=22.0
Q ss_pred eeEEECCCCCCHHHHHHHHHHHHc
Q 025758 36 HLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
.|.|.|+.||||||+++.+|+.+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 494
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.16 E-value=0.012 Score=49.69 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758 21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF 59 (248)
Q Consensus 21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~ 59 (248)
-.+.+...++=++...++++|++|+|||+++..|+..+.
T Consensus 162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 344555555556777799999999999999999998664
No 495
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.16 E-value=0.0034 Score=54.00 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=0.0
Q ss_pred eEEECCCCCCHHHHHHHHHHHHcCCCc
Q 025758 37 LLFYGPPGSGKKTLIMALLRQVFGPGA 63 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l~~~~~ 63 (248)
.+|+||||+||||++.+++. +..+.+
T Consensus 29 ~~i~G~nG~GKstll~ai~~-~~~~~~ 54 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISF-VLGVRS 54 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHH-HTTC--
T ss_pred EEEECCCCCCHHHHHHHHHh-hhcccc
No 496
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0028 Score=46.43 Aligned_cols=21 Identities=24% Similarity=0.706 Sum_probs=19.3
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999986
No 497
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.15 E-value=0.0034 Score=45.81 Aligned_cols=20 Identities=25% Similarity=0.683 Sum_probs=19.1
Q ss_pred eEEECCCCCCHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~ 56 (248)
+++.|++|+||||+++.+.+
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999999986
No 498
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.14 E-value=0.0028 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=19.5
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999999986
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.14 E-value=0.0033 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.0
Q ss_pred eeEEECCCCCCHHHHHHHHHH
Q 025758 36 HLLFYGPPGSGKKTLIMALLR 56 (248)
Q Consensus 36 ~ill~Gp~G~GKTtla~~ia~ 56 (248)
.+++.|++|+||||+++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999874
No 500
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.12 E-value=0.0036 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEECCCCCCHHHHHHHHHHHH
Q 025758 37 LLFYGPPGSGKKTLIMALLRQV 58 (248)
Q Consensus 37 ill~Gp~G~GKTtla~~ia~~l 58 (248)
+++.|++|+||||+++.+.+.-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998743
Done!