Query 025760
Match_columns 248
No_of_seqs 137 out of 396
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3103 Rab GTPase interacting 100.0 2.1E-63 4.5E-68 439.3 18.9 232 7-248 6-249 (249)
2 COG5080 YIP1 Rab GTPase intera 100.0 1.2E-50 2.5E-55 352.9 13.4 174 72-248 52-226 (227)
3 KOG2946 Uncharacterized conser 100.0 2.8E-49 6.1E-54 346.5 15.4 172 70-247 52-231 (234)
4 KOG3114 Uncharacterized conser 99.3 1.7E-11 3.6E-16 112.7 12.7 162 81-244 80-269 (290)
5 PF04893 Yip1: Yip1 domain; I 98.4 3.8E-07 8.3E-12 74.6 5.9 134 87-231 3-161 (172)
6 KOG3094 Predicted membrane pro 97.3 0.0014 3E-08 60.1 9.3 141 72-220 77-243 (284)
7 PF03878 YIF1: YIF1; InterPro 97.1 0.0022 4.8E-08 58.2 8.1 135 79-220 37-196 (240)
8 COG5197 Predicted membrane pro 95.2 0.53 1.1E-05 42.8 12.5 117 72-189 74-215 (284)
9 PF06930 DUF1282: Protein of u 80.9 9 0.0002 32.3 7.7 57 165-224 94-150 (170)
10 PF06691 DUF1189: Protein of u 50.3 48 0.001 29.6 6.2 27 164-190 196-223 (250)
11 KOG1725 Protein involved in me 37.1 60 0.0013 28.7 4.5 53 176-231 39-91 (186)
12 PF06966 DUF1295: Protein of u 36.2 1.1E+02 0.0023 27.3 6.1 57 174-230 16-72 (235)
13 PF02061 Lambda_CIII: Lambda P 30.6 12 0.00027 25.4 -0.6 30 73-102 12-41 (45)
14 KOG3895 Synaptic vesicle prote 27.7 1.9E+02 0.0041 28.5 6.5 39 16-56 416-454 (488)
15 PF06570 DUF1129: Protein of u 25.9 1.2E+02 0.0026 26.3 4.6 33 141-173 117-152 (206)
16 PF04061 ORMDL: ORMDL family ; 25.0 51 0.0011 27.7 1.9 18 224-241 86-103 (136)
17 PHA00007 E cell lysis protein 23.1 68 0.0015 24.9 2.1 20 110-129 1-20 (91)
18 KOG3817 Uncharacterized conser 22.6 41 0.00089 32.9 1.0 47 145-193 143-189 (452)
19 PF15190 DUF4583: Domain of un 20.5 60 0.0013 27.0 1.4 16 173-188 95-110 (128)
20 PF03839 Sec62: Translocation 20.3 71 0.0015 28.9 2.0 16 186-202 149-164 (224)
No 1
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-63 Score=439.30 Aligned_cols=232 Identities=42% Similarity=0.775 Sum_probs=207.1
Q ss_pred CCCcccCCCCC----C-----CCCCCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCCCCC--CCCCCCCCCCCCCCCCC
Q 025760 7 VPPVVFPSGGN----P-----TTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPAS--YGGPISTSTSAGGSASF 75 (248)
Q Consensus 7 ~p~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~g~~~~~~--~~g~~~~~~~~g~~~~~ 75 (248)
.|+...|.-+| + .+..|.||||+|+.+.||+++. .+.+.+++++++. ++++++ +..+.| +++
T Consensus 6 ~~~~~~~tn~~~d~s~~~q~~a~~d~~qqs~~p~~~~qP~~~~-----~g~~~~~~~a~t~~~~~~~~~-G~~a~~-~~~ 78 (249)
T KOG3103|consen 6 MPPANTPTNGNYDYSGFGQPYAGFDNEQQSRVPPSYAQPPVPY-----LGQFFIPSAAATGALPAQPFG-GTIASG-NDF 78 (249)
T ss_pred CCccccCcccccCCCCcCCcccccchhhhccCCCCccCCCcCC-----CCcccccccccccccccCCCC-Cccccc-cCC
Confidence 56666666664 1 1556789999999999999877 4456777765542 556664 445522 899
Q ss_pred CCCCcchhhhccCHHHHHhcccceecccc-CCCCCCCCCcchhhHHHHHHHHHHHHhhccceeeeeeehhHHHHHHHHHH
Q 025760 76 DDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVV 154 (248)
Q Consensus 76 ~~DePLleeLgiD~~~I~~Kl~~VL~P~~-~~~~~l~d~DLwGPL~f~l~la~~L~l~gk~~Fg~Iygi~~~Gsi~ly~l 154 (248)
|||||||||||||++|||+|+++||+|+| .+.++++|.||||||+||++|+++|+++||.||||||||+.+||+.+|++
T Consensus 79 edEpPLLEELgInf~hI~~KT~~VLnP~r~~~q~i~~d~DlaGPlvf~L~f~~flLl~gKi~FgyIygi~~~gsl~iy~L 158 (249)
T KOG3103|consen 79 EDEPPLLEELGINFDHIKQKTRAVLNPFRSADQSIMKDTDLAGPLVFCLLFGLFLLLAGKIHFGYIYGISLLGSLSIYFL 158 (249)
T ss_pred CCCCchHHHhCCCHHHHHHHHhheecccccCceEEecCcccccchHHHHHHHHHHHhcCceEEEEEeeeHHHHHHHHHHH
Confidence 99999999999999999999999999999 55889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEehhhh
Q 025760 155 FNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYA 234 (248)
Q Consensus 155 l~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~~~~~~rr~Li~YP 234 (248)
+|+|+.+ |++|.+|+|++||||+|+|++|.++++++.++.+|+++++++++||||+|+++++... ++++||.|++||
T Consensus 159 ~nlm~~~--nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al-~~~~~rlLiaYp 235 (249)
T KOG3103|consen 159 LNLMSNK--NVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSAL-SMENQRLLVAYP 235 (249)
T ss_pred HHHHhhc--CcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh-hccccchhhhhH
Confidence 9999943 6999999999999999999999999999999999999999999999999999999987 899999999999
Q ss_pred HHHHHHHHHHhhcC
Q 025760 235 CFLIYTLFSLLVIF 248 (248)
Q Consensus 235 i~L~Y~~fa~l~iF 248 (248)
|+|+|..|+|+++|
T Consensus 236 ~~l~Y~~Fall~if 249 (249)
T KOG3103|consen 236 CALLYGVFALIVIF 249 (249)
T ss_pred HHHHHhhheeEEeC
Confidence 99999999999997
No 2
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-50 Score=352.94 Aligned_cols=174 Identities=29% Similarity=0.586 Sum_probs=163.8
Q ss_pred CCCCCCCCcchhhhccCHHHHHhcccceecccc-CCCCCCCCCcchhhHHHHHHHHHHHHhhccceeeeeeehhHHHHHH
Q 025760 72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIF 150 (248)
Q Consensus 72 ~~~~~~DePLleeLgiD~~~I~~Kl~~VL~P~~-~~~~~l~d~DLwGPL~f~l~la~~L~l~gk~~Fg~Iygi~~~Gsi~ 150 (248)
.|+++.|||++||+++|+++|++|+..|+.|++ .+.++++||||||||+||+++++.|+++||.||||||+++|+|.++
T Consensus 52 ~g~~p~d~pLleel~i~F~~i~~ks~~vl~p~~~~~~~i~~d~DL~gPliF~lL~sLfLsla~~shFgyiy~islfg~ls 131 (227)
T COG5080 52 RGVYPGDPPLLEELGINFGHIKSKSDDVLGPFDNKAFDILADCDLWGPLIFILLYSLFLSLAGKSHFGYIYGISLFGTLS 131 (227)
T ss_pred cCCCCCCccHHHHhcccccccccccceeeecccccchhhhhcccccccHHHHHHHHHHHHhcccceeehhhHHHHHHHHH
Confidence 567999999999999999999999999999987 5668999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEe
Q 025760 151 LYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGL 230 (248)
Q Consensus 151 ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~~~~~~rr~L 230 (248)
+++++|+|+.+ |++|++++||+|||+||+|+.|+++.++++..+...+++++|.+||+|||+.++++.. +.+|+|.|
T Consensus 132 l~~~lrLl~~~--ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l-~l~n~~ll 208 (227)
T COG5080 132 LHLLLRLLGHK--NISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKL-QLSNKRLL 208 (227)
T ss_pred HHHHHHHhccC--ceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHH
Confidence 99999999954 5999999999999999999999999999886666677777799999999999999887 78999999
Q ss_pred hhhhHHHHHHHHHHhhcC
Q 025760 231 IAYACFLIYTLFSLLVIF 248 (248)
Q Consensus 231 i~YPi~L~Y~~fa~l~iF 248 (248)
++|||+|||.+|+|+++|
T Consensus 209 v~Ypl~LFY~~fa~ii~f 226 (227)
T COG5080 209 VVYPLLLFYNVFAIIIKF 226 (227)
T ss_pred HHHHHHHHHhhheEEEEe
Confidence 999999999999999876
No 3
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-49 Score=346.53 Aligned_cols=172 Identities=23% Similarity=0.418 Sum_probs=159.1
Q ss_pred CCCCCCCCCCcchhhhccCHHHHHhcccceeccc---cCCCCCCCCCcchhhHHHHHHHHHHHHhhcc----ceeeeeee
Q 025760 70 GGSASFDDEEPLLDELGIHPDQIWKKTKSILNPF---RVNPTVHKGSDLSGPIVLYLSFGLFQLLAGK----LQFGVILG 142 (248)
Q Consensus 70 g~~~~~~~DePLleeLgiD~~~I~~Kl~~VL~P~---~~~~~~l~d~DLwGPL~f~l~la~~L~l~gk----~~Fg~Iyg 142 (248)
.+++++++|||+|||++||+++|+.|+++|++|+ +.+.+.+||||||||+.+|+.+|++|++++. .+|+.+|.
T Consensus 52 ~~~e~dTldePv~~tlkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~~vFs~vf~ 131 (234)
T KOG2946|consen 52 EVNEEDTLDEPVLETLKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSASVFAVVFA 131 (234)
T ss_pred ccCCCCcccchHHHHHHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccchhHHHHHH
Confidence 5688999999999999999999999999999998 3577899999999999999999999999763 47999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHH-HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025760 143 WIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAF-SLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLA 221 (248)
Q Consensus 143 i~~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli-~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~ 221 (248)
++|+|.+++|+|.|+|||+ |+|+|++|++||||||+++.|++ +++-.+ .++|+++..++.+||+|+|..+++...
T Consensus 132 i~wfG~~vvtln~kLLGgn---Is~fQsl~IlGYCLfPl~v~ali~~~~~~l-~~lr~vv~~~~~~WSsyaa~~~l~~~~ 207 (234)
T KOG2946|consen 132 ILWFGAVVVTLNIKLLGGN---ISFFQSLCILGYCLFPLVVAALIICLFRDL-FFLRLVVTSIGLAWSSYAAMGFLSISQ 207 (234)
T ss_pred HHHHHHHHHHHHHHHhCCc---eeEEeehhhhhhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999999975 99999999999999999999854 555554 899999999999999999999999987
Q ss_pred CCCCCeeEehhhhHHHHHHHHHHhhc
Q 025760 222 DGGEEHRGLIAYACFLIYTLFSLLVI 247 (248)
Q Consensus 222 ~~~~~rr~Li~YPi~L~Y~~fa~l~i 247 (248)
+ .+||.|++||+||||+.++||++
T Consensus 208 ~--~~kk~LavYPvFL~y~~~s~lii 231 (234)
T KOG2946|consen 208 L--PRKKLLAVYPVFLFYFSVSWLII 231 (234)
T ss_pred c--ccccceehhhHHHHHHhhheEEE
Confidence 4 99999999999999999999975
No 4
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.7e-11 Score=112.68 Aligned_cols=162 Identities=14% Similarity=0.203 Sum_probs=111.9
Q ss_pred chhhhccCHHHHHhcccceecccc-CCCCCCCCCcchhhHHHHHHHHHHHHhhcc-----------------------ce
Q 025760 81 LLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGK-----------------------LQ 136 (248)
Q Consensus 81 LleeLgiD~~~I~~Kl~~VL~P~~-~~~~~l~d~DLwGPL~f~l~la~~L~l~gk-----------------------~~ 136 (248)
...-+++|+.++.+|++.++.|++ ..+++-+++|||||+++|.++.+.+..+|. ..
T Consensus 80 yq~fFdVDt~qV~~Rl~~SliP~~~~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~v~sa 159 (290)
T KOG3114|consen 80 YQPFFDVDTAQVRKRLKESLIPRNYVRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGLVTSA 159 (290)
T ss_pred hccccCCCHHHHHHHHHHhcCCccccccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecccchHHHH
Confidence 444599999999999999999955 466677889999999999999999887641 22
Q ss_pred eeeeeehhHHHHHHHHHHHHHhcC-CC-CccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 025760 137 FGVILGWIVVSSIFLYVVFNMLAG-RN-GNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARAST 214 (248)
Q Consensus 137 Fg~Iygi~~~Gsi~ly~ll~LL~~-~~-~~isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas 214 (248)
+.+||++.|+..+.++-.++..+- +. ...+++..+|+.||+++....+.+++ .++. .+++++++..+..=|..-=.
T Consensus 160 a~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~-iv~~-~~~~wvl~~~~~~~S~~~L~ 237 (290)
T KOG3114|consen 160 ATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLW-IVPS-SMVQWVLVGTALGLSGTFLA 237 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHH-hccH-HHHHHHHHHHHHHHhHHHHH
Confidence 446899999999999999988872 11 23677889999999999999944444 4666 67888776555544433222
Q ss_pred HHHHhhcCCC--CCeeEehhhhHHHHHHHHHH
Q 025760 215 NLMVSLADGG--EEHRGLIAYACFLIYTLFSL 244 (248)
Q Consensus 215 ~~~~~~~~~~--~~rr~Li~YPi~L~Y~~fa~ 244 (248)
+-+....-.. .++-.+.+.=+.++-+.++.
T Consensus 238 ~~l~p~~~~~~~~~~a~~~iv~ivllh~lla~ 269 (290)
T KOG3114|consen 238 GTLWPAVRLDGILHFAFLLIVEIVLLHLLLAL 269 (290)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 2222221011 23344555555555555554
No 5
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=98.44 E-value=3.8e-07 Score=74.57 Aligned_cols=134 Identities=18% Similarity=0.293 Sum_probs=96.0
Q ss_pred cCHHHHHhcccceeccccCCCCCCCCCcchhhHHHHHHHHHHHHhhc-----------------cceeee-----e--ee
Q 025760 87 IHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAG-----------------KLQFGV-----I--LG 142 (248)
Q Consensus 87 iD~~~I~~Kl~~VL~P~~~~~~~l~d~DLwGPL~f~l~la~~L~l~g-----------------k~~Fg~-----I--yg 142 (248)
+|+++..+|+++--. ..+++|++++++.++.+...+...+ ...++. + ..
T Consensus 3 ~~P~~~f~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 75 (172)
T PF04893_consen 3 FSPREFFRRLRESPR-------ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILI 75 (172)
T ss_pred cCHHHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 566666666554222 4577999999999988888766552 111111 1 24
Q ss_pred hhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025760 143 WIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQ-GGAIRFAVSAVFVLWAARASTNLMVSLA 221 (248)
Q Consensus 143 i~~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~-~~~~r~il~~~~v~WSt~aas~~~~~~~ 221 (248)
...+.+..++...|+++++ .++.++.|+.|||..|.++..++..+... .......+..++.+|+.+.....+.+..
T Consensus 76 ~~~i~~~~~~~~~~~~gg~---~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~gl~~~~ 152 (172)
T PF04893_consen 76 GWFILALILHLIAKLFGGK---GSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIGLREVH 152 (172)
T ss_pred HHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667778888889876 78999999999999999999999876543 2224556678899999999999999988
Q ss_pred CCCCCeeEeh
Q 025760 222 DGGEEHRGLI 231 (248)
Q Consensus 222 ~~~~~rr~Li 231 (248)
+.+.+|...
T Consensus 153 -~~~~~ka~~ 161 (172)
T PF04893_consen 153 -RLSRGKAFL 161 (172)
T ss_pred -CCChhHHHH
Confidence 555555433
No 6
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=97.32 E-value=0.0014 Score=60.07 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=92.6
Q ss_pred CCCCCCCCcchhhhccCHHHHHhcccceeccccC--------------CCCCCCCCcchhhHHHHHHHHHHHHh----hc
Q 025760 72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFRV--------------NPTVHKGSDLSGPIVLYLSFGLFQLL----AG 133 (248)
Q Consensus 72 ~~~~~~DePLleeLgiD~~~I~~Kl~~VL~P~~~--------------~~~~l~d~DLwGPL~f~l~la~~L~l----~g 133 (248)
.++.-.++-+.-.+.+|-.=+.+|++-++.|+.. .++.++.+||.=|++-.+++-++.-+ .|
T Consensus 77 ~~k~~~~~~l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg 156 (284)
T KOG3094|consen 77 LGKYVSVPKLKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQG 156 (284)
T ss_pred hhhhccCccceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhcc
Confidence 5666677778888999999999999999999741 13477889999999988877665432 34
Q ss_pred c-------ceeeeeeehhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHh-cchhhHHHHHHHHH
Q 025760 134 K-------LQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFL-PQGGAIRFAVSAVF 205 (248)
Q Consensus 134 k-------~~Fg~Iygi~~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~-~~~~~~r~il~~~~ 205 (248)
+ +.|+--..++++-. +++.+..++-+.++..+..-.+|--||-..+++++.+..++. +. .-.+.
T Consensus 157 ~FsPE~Lg~~~s~al~~v~le~-l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~~-------~yyi~ 228 (284)
T KOG3094|consen 157 RFSPEALGILASKALAWVILEV-LLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGPY-------GYYIA 228 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheecch-------hHHHH
Confidence 3 23333333333333 333333333332235888899999999999999998887543 22 22334
Q ss_pred HHHHHHHHHHHHHhh
Q 025760 206 VLWAARASTNLMVSL 220 (248)
Q Consensus 206 v~WSt~aas~~~~~~ 220 (248)
.+|-+.|-.-|+.+.
T Consensus 229 ~~yt~~a~gvFLlRS 243 (284)
T KOG3094|consen 229 LAYTYLAFGVFLLRS 243 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556655555555554
No 7
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=97.09 E-value=0.0022 Score=58.20 Aligned_cols=135 Identities=18% Similarity=0.285 Sum_probs=98.9
Q ss_pred CcchhhhccCHHHHHhcccceeccccC--------------CCCCCCCCcchhhHHHHHHHHHHHHh----hcc------
Q 025760 79 EPLLDELGIHPDQIWKKTKSILNPFRV--------------NPTVHKGSDLSGPIVLYLSFGLFQLL----AGK------ 134 (248)
Q Consensus 79 ePLleeLgiD~~~I~~Kl~~VL~P~~~--------------~~~~l~d~DLwGPL~f~l~la~~L~l----~gk------ 134 (248)
..+.-.+.+|-.=|.+|++-++.|+.. .++..+.+||.=|++-++++-++-.+ +|+
T Consensus 37 ~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~L 116 (240)
T PF03878_consen 37 SSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILGLQGRFSPELL 116 (240)
T ss_pred ccceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 357778999999999999999999751 13466789999999999988776544 243
Q ss_pred -ceeeeeeehhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 025760 135 -LQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARAS 213 (248)
Q Consensus 135 -~~Fg~Iygi~~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aa 213 (248)
..++.-.+++.+=.+++.+.+.+|+.+ +++++.-.+|..||-..++++..++.++... ..- -+..+|.+.+.
T Consensus 117 g~~~s~al~~~~lEv~i~k~~~y~l~~~-~~~~~lDlvay~GYKfv~ii~~~l~~~l~~~--~~y----y~~~ly~~~a~ 189 (240)
T PF03878_consen 117 GIQASSALVWWFLEVLIIKLGLYLLNIS-SSLPILDLVAYSGYKFVGIILTLLASLLFGS--WVY----YIALLYTSFAN 189 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHhhcchHHHHHHHHHHHHHccc--HHH----HHHHHHHHHHH
Confidence 334455666666666677777788763 3599999999999999999988888776432 222 34667777776
Q ss_pred HHHHHhh
Q 025760 214 TNLMVSL 220 (248)
Q Consensus 214 s~~~~~~ 220 (248)
.-|+.+.
T Consensus 190 ~~Fl~Rs 196 (240)
T PF03878_consen 190 AFFLLRS 196 (240)
T ss_pred HHHHHHH
Confidence 6666543
No 8
>COG5197 Predicted membrane protein [Function unknown]
Probab=95.16 E-value=0.53 Score=42.81 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=78.1
Q ss_pred CCCCCCCCcchhhhccCHHHHHhcccceeccccC-------C-------CCCCCCCcchhhHHHHHHHHHHHHh-hc-c-
Q 025760 72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFRV-------N-------PTVHKGSDLSGPIVLYLSFGLFQLL-AG-K- 134 (248)
Q Consensus 72 ~~~~~~DePLleeLgiD~~~I~~Kl~~VL~P~~~-------~-------~~~l~d~DLwGPL~f~l~la~~L~l-~g-k- 134 (248)
++.--.-.++-..+.+|-+-+.+|++-+|.|++. | ++.++.+|++=|++-.+++-++.-. .| |
T Consensus 74 ~g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~GL~g 153 (284)
T COG5197 74 TGNAASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLKG 153 (284)
T ss_pred hcccccccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhhccc
Confidence 3444455678889999999999999999999751 2 2458889999999988888776533 22 2
Q ss_pred ----ceeeeeeehhHHHHHHHHHHHHHhcC----CCCccceeeeeeecccchHHHHHHHHHHH
Q 025760 135 ----LQFGVILGWIVVSSIFLYVVFNMLAG----RNGNLDLHTCTSVVGYCMLPVVILAAFSL 189 (248)
Q Consensus 135 ----~~Fg~Iygi~~~Gsi~ly~ll~LL~~----~~~~isf~q~~siLGYcL~Plvi~sli~l 189 (248)
..||+.+.-...-. ++-+++--+|+ .+..-++...+|-.||=..|++++.+.-.
T Consensus 154 ~F~PE~lg~~~s~~~a~v-~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~ 215 (284)
T COG5197 154 SFNPEDLGYKLSSTLAFV-CVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKN 215 (284)
T ss_pred CCCHHHhhHHHHHHHHHH-HHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHHHhhh
Confidence 34555443322222 22222333343 11124467788999999999999998764
No 9
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=80.90 E-value=9 Score=32.27 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=41.7
Q ss_pred cceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025760 165 LDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGG 224 (248)
Q Consensus 165 isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~~~~ 224 (248)
-++-++.-..+|...|+.+..+++...+ .++......++..|+.+--.--..... +.
T Consensus 94 ~s~~~~~~~a~y~~tPl~L~~i~~~~~~--~~l~~~~~~~~~~~~~~Lly~Gv~~~~-~i 150 (170)
T PF06930_consen 94 PSYKKCLAFAAYAATPLFLGGIVNLYPS--LWLTLLVGLIALIYSVYLLYLGVPIFM-NI 150 (170)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-Cc
Confidence 7788999999999999999999887654 344445566677787766555555555 44
No 10
>PF06691 DUF1189: Protein of unknown function (DUF1189); InterPro: IPR009574 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.
Probab=50.33 E-value=48 Score=29.57 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=21.6
Q ss_pred ccceeeeeeecccch-HHHHHHHHHHHH
Q 025760 164 NLDLHTCTSVVGYCM-LPVVILAAFSLF 190 (248)
Q Consensus 164 ~isf~q~~siLGYcL-~Plvi~sli~lf 190 (248)
.++|.+++.+.-||. +|.++.+++..+
T Consensus 196 ~lsy~~~~ki~~yA~TlP~ll~~i~~~l 223 (250)
T PF06691_consen 196 KLSYKQLWKISIYAITLPTLLFAIIGLL 223 (250)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999998 566666666665
No 11
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.13 E-value=60 Score=28.68 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEeh
Q 025760 176 YCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLI 231 (248)
Q Consensus 176 YcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~~~~~~rr~Li 231 (248)
||+++.+.+- ++++-.+...+++.-+++++|=.|++.+-+.... ..++++.|+
T Consensus 39 ~~~~g~~~l~--~v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~-k~dD~~wL~ 91 (186)
T KOG1725|consen 39 YVFAGAILLL--AVYLLFGSGGPLLCNLIGFLYPAYASVKAIESPS-KDDDTQWLT 91 (186)
T ss_pred hhhHHHHHHH--HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCC-CcchHHHHH
Confidence 4555553332 3333334566777788899999999999776443 456666665
No 12
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=36.24 E-value=1.1e+02 Score=27.34 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEe
Q 025760 174 VGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGL 230 (248)
Q Consensus 174 LGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~~~~~~rr~L 230 (248)
+.|++.|.+++......-.....-+++++++.++|+.+=+..++.+.....+|+|+-
T Consensus 16 ~~ws~~~~~~a~~~~~~~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~~ 72 (235)
T PF06966_consen 16 ILWSFGFVLVAWVYALFSDGFSPRQLLVAALVIVWGLRLGYFLFRRNLGWGEDWRYD 72 (235)
T ss_pred CcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHH
Confidence 357777666544444433333455677788899999999999998865334566543
No 13
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.58 E-value=12 Score=25.41 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=26.7
Q ss_pred CCCCCCCcchhhhccCHHHHHhcccceecc
Q 025760 73 ASFDDEEPLLDELGIHPDQIWKKTKSILNP 102 (248)
Q Consensus 73 ~~~~~DePLleeLgiD~~~I~~Kl~~VL~P 102 (248)
|-..+.|+|||.+-|.+++=|+|+-.+|+-
T Consensus 12 G~~ql~ESLLdrItRklr~gwKRl~~iLnQ 41 (45)
T PF02061_consen 12 GCPQLSESLLDRITRKLRDGWKRLWDILNQ 41 (45)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456689999999999999999999999874
No 14
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.75 E-value=1.9e+02 Score=28.53 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 025760 16 GNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATP 56 (248)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~g~~~~ 56 (248)
++|...+-.++||.| |.+|++.+.....-|+--.||+.-
T Consensus 416 ~~~g~a~~~pt~~~P--prPppqggppP~g~~~~p~~~~hl 454 (488)
T KOG3895|consen 416 GLPGPAQASPTRRLP--PRPPPQGGPPPRGHMSDPVGSRHL 454 (488)
T ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCCCccccCCccccccC
Confidence 334344444555555 233333344455567777776643
No 15
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.93 E-value=1.2e+02 Score=26.32 Aligned_cols=33 Identities=9% Similarity=0.236 Sum_probs=19.4
Q ss_pred eehhHHHHHHHHHHHHHhcC---CCCccceeeeeee
Q 025760 141 LGWIVVSSIFLYVVFNMLAG---RNGNLDLHTCTSV 173 (248)
Q Consensus 141 ygi~~~Gsi~ly~ll~LL~~---~~~~isf~q~~si 173 (248)
...+.+|.++++...+.+.. ++...++...+.+
T Consensus 117 i~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~ 152 (206)
T PF06570_consen 117 ILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILI 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 44555677788888888874 2223455544433
No 16
>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates. ORMDLs are involved in protein folding in the endoplasmic reticulum. ; GO: 0016021 integral to membrane
Probab=25.04 E-value=51 Score=27.74 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.4
Q ss_pred CCCeeEehhhhHHHHHHH
Q 025760 224 GEEHRGLIAYACFLIYTL 241 (248)
Q Consensus 224 ~~~rr~Li~YPi~L~Y~~ 241 (248)
-+.||+|.+.|+.||.+.
T Consensus 86 TptrKFL~~vPivLflla 103 (136)
T PF04061_consen 86 TPTRKFLTIVPIVLFLLA 103 (136)
T ss_pred CcceeeeehhHHHHHHHH
Confidence 467999999999999764
No 17
>PHA00007 E cell lysis protein
Probab=23.10 E-value=68 Score=24.85 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.5
Q ss_pred CCCCcchhhHHHHHHHHHHH
Q 025760 110 HKGSDLSGPIVLYLSFGLFQ 129 (248)
Q Consensus 110 l~d~DLwGPL~f~l~la~~L 129 (248)
++.|.|||=+.|.++++++|
T Consensus 1 Me~WTL~~~LAFLLLLSLlL 20 (91)
T PHA00007 1 MEHWTLSDTLAFLLLLSLLL 20 (91)
T ss_pred CceeeHHHHHHHHHHHHHHH
Confidence 46799999999999999876
No 18
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.59 E-value=41 Score=32.94 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcc
Q 025760 145 VVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQ 193 (248)
Q Consensus 145 ~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~ 193 (248)
.++.+++.+..+.|+.+ .+=++.+-|++|-|.-=++++-++.-|+|.
T Consensus 143 fv~gi~Lff~ar~Lsrn--~vFYYssG~v~GilaSLl~Viflv~rf~PK 189 (452)
T KOG3817|consen 143 FVVGILLFFSARRLSRN--SVFYYSSGIVIGILASLLVVIFLVARFFPK 189 (452)
T ss_pred HHHHHHHHHHHHHhccC--ceEEEecccHHHHHHHHHHHHHHHHHhccc
Confidence 33444555555555433 144455555555555555555555555553
No 19
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=20.49 E-value=60 Score=27.01 Aligned_cols=16 Identities=44% Similarity=0.980 Sum_probs=12.8
Q ss_pred ecccchHHHHHHHHHH
Q 025760 173 VVGYCMLPVVILAAFS 188 (248)
Q Consensus 173 iLGYcL~Plvi~sli~ 188 (248)
-+|||.+|+++..+-+
T Consensus 95 ~vgycv~P~cl~~~c~ 110 (128)
T PF15190_consen 95 TVGYCVIPVCLATLCS 110 (128)
T ss_pred hheeeeHHHHHHHHHh
Confidence 4799999999876654
No 20
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=20.29 E-value=71 Score=28.93 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=7.3
Q ss_pred HHHHHhcchhhHHHHHH
Q 025760 186 AFSLFLPQGGAIRFAVS 202 (248)
Q Consensus 186 li~lf~~~~~~~r~il~ 202 (248)
++.+|+-+ .++|+++.
T Consensus 149 ll~~~~~l-aivRlilf 164 (224)
T PF03839_consen 149 LLGLFFAL-AIVRLILF 164 (224)
T ss_pred HHHHHHHH-HHHHHHHH
Confidence 34443333 45565543
Done!