Query 025760
Match_columns 248
No_of_seqs 137 out of 396
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ab9_A Pro-SFTI-1; protein, be 12.9 86 0.0029 18.7 1.3 11 5-15 19-29 (31)
2 3idw_A Actin cytoskeleton-regu 11.3 57 0.0019 23.6 0.2 24 75-98 37-60 (72)
3 2y69_E Cytochrome C oxidase su 7.3 71 0.0024 26.2 -0.7 11 79-89 133-143 (152)
4 1v54_E Cytochrome C oxidase po 7.1 85 0.0029 24.4 -0.3 12 79-90 90-101 (109)
5 3dl8_C SECE; RECA-type ATPase 7.0 3.9E+02 0.013 18.1 3.2 20 85-104 4-23 (65)
6 3arc_Y Protein YCF12; PSII, me 6.9 2.1E+02 0.0073 17.1 1.5 11 115-125 13-23 (29)
7 1oef_A Apolipoprotein E; glyco 6.5 1E+02 0.0034 17.5 -0.1 20 79-98 4-23 (26)
8 3o71_B Peptide of deleted in c 6.3 1.9E+02 0.0066 16.9 1.0 12 105-116 4-15 (27)
9 2fcg_F Cationic, antibacterial 5.7 1.7E+02 0.0059 17.1 0.6 15 85-99 1-15 (26)
10 4faj_A PRGZ; substrate binding 5.3 1.4E+02 0.0048 27.5 0.0 20 168-187 23-42 (564)
No 1
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=12.93 E-value=86 Score=18.66 Aligned_cols=11 Identities=55% Similarity=1.271 Sum_probs=8.9
Q ss_pred CCCCCcccCCC
Q 025760 5 FSVPPVVFPSG 15 (248)
Q Consensus 5 ~~~p~~~~~~~ 15 (248)
-+|||..||.+
T Consensus 19 ksippicfpdg 29 (31)
T 2ab9_A 19 KSIPPICFPDG 29 (31)
T ss_dssp SSSSCSSSSCC
T ss_pred ccCCCcccCCC
Confidence 36999999874
No 2
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=11.30 E-value=57 Score=23.59 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.5
Q ss_pred CCCCCcchhhhccCHHHHHhcccc
Q 025760 75 FDDEEPLLDELGIHPDQIWKKTKS 98 (248)
Q Consensus 75 ~~~DePLleeLgiD~~~I~~Kl~~ 98 (248)
.++++++|.|||+...+|.+=+++
T Consensus 37 ~Dl~~~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 37 PDINNSMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp GGCCHHHHHHTTCCHHHHHHHHHH
T ss_pred hhCCHHHHHHcCCchhhHHHHHHH
Confidence 468899999999999888775544
No 3
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.35 E-value=71 Score=26.18 Aligned_cols=11 Identities=55% Similarity=0.939 Sum_probs=7.3
Q ss_pred CcchhhhccCH
Q 025760 79 EPLLDELGIHP 89 (248)
Q Consensus 79 ePLleeLgiD~ 89 (248)
.|+++||||+.
T Consensus 133 kPtl~ELGI~t 143 (152)
T 2y69_E 133 RPTLNELGIST 143 (152)
T ss_dssp HHHHHHHTCCC
T ss_pred hhHHHHhCCCC
Confidence 46777777764
No 4
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=7.10 E-value=85 Score=24.41 Aligned_cols=12 Identities=50% Similarity=0.841 Sum_probs=9.8
Q ss_pred CcchhhhccCHH
Q 025760 79 EPLLDELGIHPD 90 (248)
Q Consensus 79 ePLleeLgiD~~ 90 (248)
.|+++||||+..
T Consensus 90 kPtl~ELGI~t~ 101 (109)
T 1v54_E 90 RPTLNELGISTP 101 (109)
T ss_dssp HHHHHHHTCCCT
T ss_pred hhHHHHhCCCCH
Confidence 589999999854
No 5
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=7.02 E-value=3.9e+02 Score=18.12 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred hccCHHHHHhcccceecccc
Q 025760 85 LGIHPDQIWKKTKSILNPFR 104 (248)
Q Consensus 85 LgiD~~~I~~Kl~~VL~P~~ 104 (248)
+..-++++++.++.|.+|.|
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr 23 (65)
T 3dl8_C 4 LKEFLKGVRDELKRVVWPSR 23 (65)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHhcccCcCH
Confidence 34457889999999999976
No 6
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=6.91 E-value=2.1e+02 Score=17.05 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=7.4
Q ss_pred chhhHHHHHHH
Q 025760 115 LSGPIVLYLSF 125 (248)
Q Consensus 115 LwGPL~f~l~l 125 (248)
+.||+++.++.
T Consensus 13 ~aGP~VI~lLa 23 (29)
T 3arc_Y 13 IAGPMIIFLLA 23 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred hcCChheeehh
Confidence 46888876653
No 7
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=6.54 E-value=1e+02 Score=17.45 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=16.4
Q ss_pred CcchhhhccCHHHHHhcccc
Q 025760 79 EPLLDELGIHPDQIWKKTKS 98 (248)
Q Consensus 79 ePLleeLgiD~~~I~~Kl~~ 98 (248)
+|+-|++...+..|++++..
T Consensus 4 ~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 4 EPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 58888899888889888754
No 8
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=6.33 E-value=1.9e+02 Score=16.90 Aligned_cols=12 Identities=17% Similarity=-0.009 Sum_probs=8.5
Q ss_pred CCCCCCCCCcch
Q 025760 105 VNPTVHKGSDLS 116 (248)
Q Consensus 105 ~~~~~l~d~DLw 116 (248)
.+.+.++-+|||
T Consensus 4 ~~~kDlkppdlw 15 (27)
T 3o71_B 4 GSQKDLRPPDLW 15 (27)
T ss_pred CccCCCCCccee
Confidence 345567888888
No 9
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=5.75 E-value=1.7e+02 Score=17.07 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=11.5
Q ss_pred hccCHHHHHhcccce
Q 025760 85 LGIHPDQIWKKTKSI 99 (248)
Q Consensus 85 LgiD~~~I~~Kl~~V 99 (248)
++.+++.|.+|++.-
T Consensus 1 ig~~~kkIgQkIkdF 15 (26)
T 2fcg_F 1 IGKEFKRIVQRIKDF 15 (26)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 467788899888864
No 10
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=5.25 E-value=1.4e+02 Score=27.46 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred eeeeeecccchHHHHHHHHH
Q 025760 168 HTCTSVVGYCMLPVVILAAF 187 (248)
Q Consensus 168 ~q~~siLGYcL~Plvi~sli 187 (248)
+.-+|.||-.|+|+|++|+=
T Consensus 23 ykkfcflgigllplvlascg 42 (564)
T 4faj_A 23 YKKFCFLGIGLLPLVLASCG 42 (564)
T ss_dssp --------------------
T ss_pred hhhheeecccHHHHHHHhcC
Confidence 56689999999999998874
Done!