BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025761
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
          Length = 857

 Score = 30.4 bits (67), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 34  FITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAP 93
           F+TY  K    + + L  S     F L      F + D    L  G I +   +    +P
Sbjct: 272 FLTYGLKSVSQNVLPLLQS----AFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISP 327

Query: 94  LSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVAL-PNIV 142
           L ++ ++ RT   + + F     + +S   W     F +++   + PN++
Sbjct: 328 LPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLI 377


>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
           9(Z),11(E)-Octadecadienoic Acid
 pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
           Methoxy-Phenol
 pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
           (Egc)
 pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
 pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
           4-nitrocatechol At 2.15 Angstrom Resolution
 pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
           2.0 A Resolution
 pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
 pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
 pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
          Length = 857

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 34  FITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAP 93
           F+TY  K    + + L  S     F L      F + D    L  G I +   +    +P
Sbjct: 272 FLTYGLKSVSQNVLPLLQS----AFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISP 327

Query: 94  LSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVAL-PNIV 142
           L ++ ++ RT   + + F     + +S   W     F +++   + PN++
Sbjct: 328 LPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLI 377


>pdb|2IJZ|A Chain A, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|B Chain B, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|C Chain C, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|D Chain D, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|E Chain E, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|F Chain F, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|G Chain G, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|H Chain H, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|I Chain I, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|J Chain J, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|K Chain K, Crystal Structure Of Aminopeptidase
 pdb|2IJZ|L Chain L, Crystal Structure Of Aminopeptidase
          Length = 428

 Score = 27.7 bits (60), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 170 LPEAQLKSIVVLSNLGASEVYPVDIHPDDADANDVNQGPKEN 211
           LPE    S  +  +L  S      +HP+ AD +D N GP  N
Sbjct: 287 LPEGDAFSRAIQRSLLVSADNAHGVHPNYADRHDANHGPALN 328


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,577,539
Number of Sequences: 62578
Number of extensions: 243148
Number of successful extensions: 502
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 3
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)