Query 025761
Match_columns 248
No_of_seqs 228 out of 1150
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1.1E-37 2.5E-42 277.9 7.5 159 1-162 53-212 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 1.2E-22 2.6E-27 154.2 7.9 87 76-162 1-87 (87)
3 KOG1623 Multitransmembrane pro 99.4 9.5E-14 2.1E-18 124.5 6.2 89 74-162 5-94 (243)
4 COG4095 Uncharacterized conser 99.3 5.6E-12 1.2E-16 96.6 5.0 82 75-159 5-86 (89)
5 PF03083 MtN3_slv: Sugar efflu 98.4 9.4E-08 2E-12 72.3 1.2 41 1-42 47-87 (87)
6 PF04193 PQ-loop: PQ loop repe 98.0 1.3E-05 2.8E-10 56.7 5.5 56 76-134 3-58 (61)
7 TIGR00951 2A43 Lysosomal Cysti 95.6 0.021 4.5E-07 50.8 5.2 49 76-127 5-53 (220)
8 TIGR00951 2A43 Lysosomal Cysti 92.7 1.3 2.8E-05 39.4 10.2 76 75-153 139-215 (220)
9 PF03650 MPC: Uncharacterised 92.0 0.016 3.4E-07 47.2 -2.6 60 103-162 39-100 (119)
10 smart00679 CTNS Repeated motif 91.4 0.2 4.2E-06 30.7 2.5 27 92-118 2-28 (32)
11 COG4095 Uncharacterized conser 88.3 0.085 1.8E-06 40.9 -1.2 35 2-37 50-84 (89)
12 PF10688 Imp-YgjV: Bacterial i 86.4 5 0.00011 34.0 8.4 37 115-151 118-154 (163)
13 KOG1589 Uncharacterized conser 85.0 0.18 3.9E-06 40.6 -1.0 60 103-162 43-104 (118)
14 PRK01021 lpxB lipid-A-disaccha 75.9 7 0.00015 40.0 6.4 73 77-153 142-214 (608)
15 KOG3211 Predicted endoplasmic 69.8 32 0.00069 31.0 8.3 74 89-162 153-227 (230)
16 KOG4314 Predicted carbohydrate 66.3 20 0.00044 32.4 6.4 57 69-125 126-183 (290)
17 PHA02246 hypothetical protein 66.1 20 0.00043 31.0 6.0 58 91-149 122-181 (192)
18 KOG2913 Predicted membrane pro 62.6 15 0.00032 33.8 5.1 41 92-132 23-63 (260)
19 PF15102 TMEM154: TMEM154 prot 60.4 12 0.00027 31.6 3.8 28 135-162 60-87 (146)
20 COG3952 Predicted membrane pro 58.2 4.9 0.00011 32.3 1.0 62 101-162 48-109 (113)
21 PF07578 LAB_N: Lipid A Biosyn 54.5 34 0.00074 25.6 4.9 44 104-147 23-66 (72)
22 KOG2568 Predicted membrane pro 52.8 1.5E+02 0.0033 30.0 10.5 33 5-37 191-223 (518)
23 KOG2913 Predicted membrane pro 47.4 17 0.00036 33.4 2.8 85 74-161 161-249 (260)
24 TIGR00910 2A0307_GadC glutamat 46.4 1.1E+02 0.0024 30.1 8.5 10 121-130 412-421 (507)
25 KOG3211 Predicted endoplasmic 40.3 40 0.00088 30.3 3.9 55 75-132 31-85 (230)
26 PF06027 DUF914: Eukaryotic pr 39.6 3.4E+02 0.0073 25.8 12.5 58 97-158 250-307 (334)
27 TIGR00341 conserved hypothetic 35.7 29 0.00063 33.0 2.5 48 115-162 247-294 (325)
28 PF11364 DUF3165: Protein of u 34.5 1.9E+02 0.004 22.2 6.2 22 31-52 10-31 (81)
29 PF06432 GPI2: Phosphatidylino 31.9 2.5E+02 0.0054 25.7 8.0 80 21-108 141-223 (282)
30 PRK11387 S-methylmethionine tr 30.5 89 0.0019 30.2 5.0 88 75-165 364-463 (471)
31 PF05297 Herpes_LMP1: Herpesvi 30.4 17 0.00037 34.4 0.0 87 73-162 102-189 (381)
32 PF07787 DUF1625: Protein of u 29.3 53 0.0012 29.4 3.0 24 76-99 187-210 (248)
33 PF06570 DUF1129: Protein of u 26.9 1.6E+02 0.0036 25.4 5.6 31 132-162 172-202 (206)
34 PF07695 7TMR-DISM_7TM: 7TM di 26.2 3.6E+02 0.0077 21.9 9.8 19 95-114 140-158 (205)
35 PF03600 CitMHS: Citrate trans 24.8 4.7E+02 0.01 23.9 8.5 20 22-41 178-197 (351)
36 KOG1590 Uncharacterized conser 24.0 33 0.00072 28.3 0.6 68 89-158 35-104 (132)
37 TIGR02896 spore_III_AF stage I 22.6 1.5E+02 0.0033 23.5 4.2 31 68-98 23-53 (106)
38 KOG3646 Acetylcholine receptor 22.6 2E+02 0.0044 28.8 5.8 23 78-100 295-317 (486)
39 COG5196 ERD2 ER lumen protein 22.5 5.4E+02 0.012 22.7 8.6 70 90-159 129-202 (214)
40 cd08764 Cyt_b561_CG1275_like N 22.3 3.7E+02 0.0081 24.0 7.0 80 75-154 97-191 (214)
41 PHA02246 hypothetical protein 21.4 2.9E+02 0.0062 24.0 5.8 66 93-160 20-87 (192)
42 PF06946 Phage_holin_5: Phage 20.5 1.4E+02 0.0029 23.5 3.4 65 98-165 23-89 (93)
43 COG3125 CyoD Heme/copper-type 20.3 4.7E+02 0.01 21.1 7.5 16 20-35 20-35 (111)
44 PF07857 DUF1632: CEO family ( 20.2 1.7E+02 0.0036 26.9 4.4 63 75-137 180-251 (254)
45 KOG2489 Transmembrane protein 20.1 7.8E+02 0.017 25.2 9.3 62 70-131 461-522 (592)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=277.88 Aligned_cols=159 Identities=49% Similarity=0.918 Sum_probs=140.0
Q ss_pred CeeEEeeeeecCceeEEEeehhhHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHHHhhheeeecC-cchhhhhh
Q 025761 1 MLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATD-STRILILG 79 (248)
Q Consensus 1 ~lWl~YG~l~~d~~~li~vN~~G~vl~~iYi~vf~~ya~~k~r~~~~kl~~~~~~~~~~~i~l~t~~~~~~-~~~~~ilG 79 (248)
++|++||+++++...++++|++|++++++|+.+|+.||++|++... .....+++++++++++....++ +++.+.+|
T Consensus 53 ~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi~~f~~ya~~k~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG 129 (243)
T KOG1623|consen 53 SLWLYYGLLKVHDYLLITINGIGLVIETVYISIFLYYAPKKKTVKI---VLALVLGVIGLIILLTLLLFHDPERRVSVLG 129 (243)
T ss_pred HHHHHhhhhccCceEEEEEehhcHHHHHHHHHHHheecCchheeEe---eehHHHHHHHHHHHHHHHhcCCcceeeeeee
Confidence 5899999988844579999999999999999999999998763322 2233455666677777766655 56689999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhheeEEEeC
Q 025761 80 WICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIYKN 159 (248)
Q Consensus 80 ~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~Ly~~Y~~ 159 (248)
++|++++++||+|||..|++|+|+||+|+||++++++.++++..|++||++++|.||++||++|++++++|+++|+.|++
T Consensus 130 ~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~ 209 (243)
T KOG1623|consen 130 IVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPK 209 (243)
T ss_pred hhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCc
Q 025761 160 ANK 162 (248)
Q Consensus 160 ~k~ 162 (248)
++.
T Consensus 210 ~~~ 212 (243)
T KOG1623|consen 210 TTE 212 (243)
T ss_pred Ccc
Confidence 873
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.88 E-value=1.2e-22 Score=154.24 Aligned_cols=87 Identities=29% Similarity=0.615 Sum_probs=84.4
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhheeE
Q 025761 76 LILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYV 155 (248)
Q Consensus 76 ~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~Ly~ 155 (248)
+++|++|.++++++|+||++++++++|+||++++|+.|++++++||.+|+.||++++|++++++|++|.+++++|+.+|+
T Consensus 1 ~~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 1 QVLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCc
Q 025761 156 IYKNANK 162 (248)
Q Consensus 156 ~Y~~~k~ 162 (248)
+|+++|+
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998875
No 3
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.45 E-value=9.5e-14 Score=124.53 Aligned_cols=89 Identities=22% Similarity=0.430 Sum_probs=84.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccC-CeeeEechhHHHHHHHHHhh
Q 025761 74 RILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQK-DICVALPNIVGFLLGLTQML 152 (248)
Q Consensus 74 ~~~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~-D~fI~ipN~~G~~l~~~ql~ 152 (248)
-...+|..|.++++++|.||+++++|++|+||+|+.+..|++++++||.+|+.||++.+ |..++..|.+|+++.++++.
T Consensus 5 ~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi~ 84 (243)
T KOG1623|consen 5 LLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYIS 84 (243)
T ss_pred HHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999887 89999999999999999999
Q ss_pred eeEEEeCCCc
Q 025761 153 LYVIYKNANK 162 (248)
Q Consensus 153 Ly~~Y~~~k~ 162 (248)
.|+.|.++|+
T Consensus 85 ~f~~ya~~k~ 94 (243)
T KOG1623|consen 85 IFLYYAPKKK 94 (243)
T ss_pred HHheecCchh
Confidence 9999998886
No 4
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=5.6e-12 Score=96.56 Aligned_cols=82 Identities=23% Similarity=0.524 Sum_probs=75.8
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhhee
Q 025761 75 ILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLY 154 (248)
Q Consensus 75 ~~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~Ly 154 (248)
.+.+|++|+.++.++| +||+.+++|+||++++++.++....+.+++|+.||++++|.++...|.+++.++++-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 4678999999999999 9999999999999999999999999999999999999999999999999999999887766
Q ss_pred EEEeC
Q 025761 155 VIYKN 159 (248)
Q Consensus 155 ~~Y~~ 159 (248)
..|..
T Consensus 82 I~~~~ 86 (89)
T COG4095 82 IKYIL 86 (89)
T ss_pred HHHHH
Confidence 65543
No 5
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=98.40 E-value=9.4e-08 Score=72.34 Aligned_cols=41 Identities=27% Similarity=0.715 Sum_probs=38.0
Q ss_pred CeeEEeeeeecCceeEEEeehhhHHHHHHHHHHHhhhcCCCc
Q 025761 1 MLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGS 42 (248)
Q Consensus 1 ~lWl~YG~l~~d~~~li~vN~~G~vl~~iYi~vf~~ya~~k~ 42 (248)
.+|+.||++.+|+ +++.+|++|++++.+|+++|++|+++|+
T Consensus 47 ~~W~~YG~l~~d~-~i~~~N~~g~~~~~~~~~~~~~y~~~~~ 87 (87)
T PF03083_consen 47 VLWLIYGILINDW-PIIVPNVFGLVLSIIYLVVYYIYPSKKK 87 (87)
T ss_pred cHhhhhhhhcCCe-eEEeeHHHHHHHHHHHHhheEEeCCCCC
Confidence 4799999999998 7999999999999999999999988764
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=98.02 E-value=1.3e-05 Score=56.66 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccCCe
Q 025761 76 LILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDI 134 (248)
Q Consensus 76 ~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D~ 134 (248)
+++|+++.++....+ +||+.+.+|+||++++++.+....++.+++|++|.++.++.
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456677766666666 99999999999999999999999999999999999987654
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.62 E-value=0.021 Score=50.84 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=43.9
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhh
Q 025761 76 LILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAY 127 (248)
Q Consensus 76 ~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~Y 127 (248)
..+|++..+.....+ +||+.+.+|+||++++++.+....++....|..|
T Consensus 5 ~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 5 QILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 567777777777766 9999999999999999999999999999999999
No 8
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=92.74 E-value=1.3 Score=39.40 Aligned_cols=76 Identities=18% Similarity=0.078 Sum_probs=50.8
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcc-cCCeeeEechhHHHHHHHHHhhe
Q 025761 75 ILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLF-QKDICVALPNIVGFLLGLTQMLL 153 (248)
Q Consensus 75 ~~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll-~~D~fI~ipN~~G~~l~~~ql~L 153 (248)
...++.+...++++ +-+||++.-.|+||+++++..-.+..+..++.=.+-... .+|...+..-.+++++..+-+.=
T Consensus 139 l~~l~~iki~is~i---kyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q 215 (220)
T TIGR00951 139 VTMLSYIKVAVTLV---KYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQ 215 (220)
T ss_pred HHHHHHHHHHHHHH---HHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444 559999999999999999998777666665444433332 36777777777777777665443
No 9
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=92.03 E-value=0.016 Score=47.23 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=54.1
Q ss_pred cCCCCccchHHHHHHHHhhHHhhhhhccc--CCeeeEechhHHHHHHHHHhheeEEEeCCCc
Q 025761 103 TKSVEFMPFILSFFLTLSAIMWFAYGLFQ--KDICVALPNIVGFLLGLTQMLLYVIYKNANK 162 (248)
Q Consensus 103 tKS~~~mp~~l~i~~~ln~~lW~~YGll~--~D~fI~ipN~~G~~l~~~ql~Ly~~Y~~~k~ 162 (248)
+|..|.++..+..+.++.+++|+-|.+.+ +|+.++..|++-...+++|+.=++.|...++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999988 6888999999999999999988887765544
No 10
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=91.43 E-value=0.2 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.5
Q ss_pred hhHHHHHHhHhcCCCCccchHHHHHHH
Q 025761 92 APLSIVAQVIRTKSVEFMPFILSFFLT 118 (248)
Q Consensus 92 SPL~~i~~VirtKS~~~mp~~l~i~~~ 118 (248)
+-+|++.+.+|+||++++++.+.+..+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 458999999999999999987766444
No 11
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=88.32 E-value=0.085 Score=40.87 Aligned_cols=35 Identities=20% Similarity=0.553 Sum_probs=28.7
Q ss_pred eeEEeeeeecCceeEEEeehhhHHHHHHHHHHHhhh
Q 025761 2 LWFYYALVKQNAFLLVTINCFGCVIETIYIILFITY 37 (248)
Q Consensus 2 lWl~YG~l~~d~~~li~vN~~G~vl~~iYi~vf~~y 37 (248)
+|+.||++.+|. |++..|.++..++.+-++.=.+|
T Consensus 50 lwliygILi~~l-Pii~aN~i~~il~liIl~~kI~~ 84 (89)
T COG4095 50 LWLIYGILINDL-PIIIANIISFILSLIILFYKIKY 84 (89)
T ss_pred HHHHHHHHHccC-cchhHHHHHHHHHHHHHHHHHHH
Confidence 799999999986 89999999999987655444444
No 12
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=86.41 E-value=5 Score=34.02 Aligned_cols=37 Identities=11% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHh
Q 025761 115 FFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQM 151 (248)
Q Consensus 115 i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql 151 (248)
+..++++.+|+.|++++++++....|.+..+...+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999998888888887766553
No 13
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=0.18 Score=40.59 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=52.7
Q ss_pred cCCCCccchHHHHHHHHhhHHhhhhhccc--CCeeeEechhHHHHHHHHHhheeEEEeCCCc
Q 025761 103 TKSVEFMPFILSFFLTLSAIMWFAYGLFQ--KDICVALPNIVGFLLGLTQMLLYVIYKNANK 162 (248)
Q Consensus 103 tKS~~~mp~~l~i~~~ln~~lW~~YGll~--~D~fI~ipN~~G~~l~~~ql~Ly~~Y~~~k~ 162 (248)
.|..|.++..-.++.+..+++|+-|.+.+ +|+.++..|++=.+.+++|+.=++.|....+
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~ 104 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQK 104 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999999999987 7899999999999999999998888854433
No 14
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=75.89 E-value=7 Score=40.03 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhhe
Q 025761 77 ILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLL 153 (248)
Q Consensus 77 ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~L 153 (248)
.+|++|-++-..=| +-|-.. -+++.-+.+|...-..+++.+++=++|++..+|...++..++|.+.-+=.+.+
T Consensus 142 ~~G~~~q~~f~~Rf---~~Qw~~-se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~l 214 (608)
T PRK01021 142 LIGCIGLTIFSLRF---FIQWFY-LEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRI 214 (608)
T ss_pred HHHHHHHHHHHHHH---HHHHHH-HHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHH
Confidence 45666554444444 222222 23334456677777899999999999999999999999999999877666544
No 15
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=69.84 E-value=32 Score=30.98 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=56.6
Q ss_pred HhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhccc-CCeeeEechhHHHHHHHHHhheeEEEeCCCc
Q 025761 89 VFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQ-KDICVALPNIVGFLLGLTQMLLYVIYKNANK 162 (248)
Q Consensus 89 mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~-~D~fI~ipN~~G~~l~~~ql~Ly~~Y~~~k~ 162 (248)
.-.|-+.++..=.|+|+++.+++.-.+.++-.+..=.+|.+.. +|.-++..-.+..+++.+-.+-++.|++++.
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~ 227 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAI 227 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 3456678888889999999999988888888888888888875 6777777777777777766666666665543
No 16
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=66.29 E-value=20 Score=32.35 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=47.9
Q ss_pred ecCcchhhhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHh-hHHhh
Q 025761 69 ATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLS-AIMWF 125 (248)
Q Consensus 69 ~~~~~~~~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln-~~lW~ 125 (248)
.+.+...+++|+.|.+.+..|-+--=-.+++++...+.+.....|+..+++| |+.|+
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
Confidence 3557888999999999998887766778899999999999998888888888 66665
No 17
>PHA02246 hypothetical protein
Probab=66.06 E-value=20 Score=30.97 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=35.8
Q ss_pred hhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccC--CeeeEechhHHHHHHHH
Q 025761 91 AAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQK--DICVALPNIVGFLLGLT 149 (248)
Q Consensus 91 ~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~--D~fI~ipN~~G~~l~~~ 149 (248)
.+-++|+.+-+|||++|+.+.++++...+.-.+ +.....+. -.+|+++..+.+++-++
T Consensus 122 LaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~-L~~~m~Lthv~~hIiiTEf~N~iLiLi 181 (192)
T PHA02246 122 LAYVTQITTFYKTKSAEGTNRFLFLIIGLGLAS-LIVSMVLTHTYVHIIATEFVNFVLILI 181 (192)
T ss_pred HHHHHHHHHHhhhcccCCCChhHHHHHHHHHHH-HHHHHhhhCCcceeeHHHHHHHHHHHH
Confidence 344899999999999999987666544333222 22222333 35677776666655443
No 18
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=62.62 E-value=15 Score=33.75 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=30.9
Q ss_pred hhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccC
Q 025761 92 APLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQK 132 (248)
Q Consensus 92 SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~ 132 (248)
+=.|++....|+||.+++|..+.+.-.+....=+.|..+..
T Consensus 23 ~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 23 QLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred hhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 33899999999999999999887766655555555555443
No 19
>PF15102 TMEM154: TMEM154 protein family
Probab=60.45 E-value=12 Score=31.55 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=18.9
Q ss_pred eeEechhHHHHHHHHHhheeEEEeCCCc
Q 025761 135 CVALPNIVGFLLGLTQMLLYVIYKNANK 162 (248)
Q Consensus 135 fI~ipN~~G~~l~~~ql~Ly~~Y~~~k~ 162 (248)
.|++|-+++.++-+.-+++.++|+|+|.
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 5778877777666666666666755554
No 20
>COG3952 Predicted membrane protein [Function unknown]
Probab=58.17 E-value=4.9 Score=32.31 Aligned_cols=62 Identities=15% Similarity=0.310 Sum_probs=51.3
Q ss_pred HhcCCCCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhheeEEEeCCCc
Q 025761 101 IRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIYKNANK 162 (248)
Q Consensus 101 irtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~Ly~~Y~~~k~ 162 (248)
.++++.+.+|.+.--++++.+.+=+.|.+-.+|..-++.|++|+..++..+-+...-++.++
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker~~~~ 109 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKERRWKP 109 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHhcccC
Confidence 46778888999888999999999999999999988778899999988888766655544443
No 21
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=54.49 E-value=34 Score=25.57 Aligned_cols=44 Identities=14% Similarity=0.369 Sum_probs=34.7
Q ss_pred CCCCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHH
Q 025761 104 KSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLG 147 (248)
Q Consensus 104 KS~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~ 147 (248)
+.-+.+|...-..+++.+++=++||+..+|..+++..++|.+.-
T Consensus 23 ~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy 66 (72)
T PF07578_consen 23 AKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIY 66 (72)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHH
Confidence 33345677777889999999999999999998777777777653
No 22
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=52.76 E-value=1.5e+02 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=21.5
Q ss_pred EeeeeecCceeEEEeehhhHHHHHHHHHHHhhh
Q 025761 5 YYALVKQNAFLLVTINCFGCVIETIYIILFITY 37 (248)
Q Consensus 5 ~YG~l~~d~~~li~vN~~G~vl~~iYi~vf~~y 37 (248)
.||++.....|++..+++=++..+++.+++...
T Consensus 191 pyGyL~a~~~Plm~fy~~m~laYvllgllW~~~ 223 (518)
T KOG2568|consen 191 PYGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQ 223 (518)
T ss_pred CCCCcChhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 488888666688888877666655554444333
No 23
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=47.38 E-value=17 Score=33.45 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=50.2
Q ss_pred hhhhhhHHHH-HHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcc---cCCeeeEechhHHHHHHHH
Q 025761 74 RILILGWICV-AVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLF---QKDICVALPNIVGFLLGLT 149 (248)
Q Consensus 74 ~~~ilG~ia~-v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll---~~D~fI~ipN~~G~~l~~~ 149 (248)
..+.+|.+.. +.+.+-.++++||+..-+|.||++++.+.++....+.+ ..|+.- ..+..=..-..-+..+-+.
T Consensus 161 ~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s~~~~~n~~w~~~~~~~~~~D~~ 237 (260)
T KOG2913|consen 161 EIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILSSYLVTNLPWLVDSKGTIYLDIF 237 (260)
T ss_pred hhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc---cccccccccccCCcccccCCcchhHHHH
Confidence 3455666444 55566678889999999999999999996665544444 456654 2221111111222334444
Q ss_pred HhheeEEEeCCC
Q 025761 150 QMLLYVIYKNAN 161 (248)
Q Consensus 150 ql~Ly~~Y~~~k 161 (248)
...=|+.|++.+
T Consensus 238 ~~~q~~~~~~~~ 249 (260)
T KOG2913|consen 238 IFLQFFNYRASK 249 (260)
T ss_pred HHHHHHHhhccc
Confidence 445555665555
No 24
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=46.36 E-value=1.1e+02 Score=30.15 Aligned_cols=10 Identities=10% Similarity=0.487 Sum_probs=5.2
Q ss_pred hHHhhhhhcc
Q 025761 121 AIMWFAYGLF 130 (248)
Q Consensus 121 ~~lW~~YGll 130 (248)
+++|.++++.
T Consensus 412 ~~~~~~~~~v 421 (507)
T TIGR00910 412 GFLLSIFAFF 421 (507)
T ss_pred HHHHHHHHHh
Confidence 4455555544
No 25
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=40.26 E-value=40 Score=30.34 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=43.4
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccC
Q 025761 75 ILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQK 132 (248)
Q Consensus 75 ~~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~ 132 (248)
.+.+|+.-...++... +||+-++...||+++++..-...-++.-..-+.|.+-.+
T Consensus 31 sklLg~~~va~sl~vK---lPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g 85 (230)
T KOG3211|consen 31 SKLLGLSTVAGSLLVK---LPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSG 85 (230)
T ss_pred HhhhhHHHHHHHHHhh---hhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcC
Confidence 4567887778888888 999999999999999998776666666666667766554
No 26
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=39.62 E-value=3.4e+02 Score=25.76 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhheeEEEe
Q 025761 97 VAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIYK 158 (248)
Q Consensus 97 i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~Ly~~Y~ 158 (248)
+.-++|.-|+-.++..+..+.+.. ++.|+.......-.-=.+|+++-++=+++|..-+
T Consensus 250 ~p~~l~~ssAt~~nLsLLTsd~~a----li~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 250 VPIVLRMSSATFFNLSLLTSDFYA----LIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHhCccceeehHHHHhhHHH----HHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 345677777777776554433322 1333333322222223466665555555554433
No 27
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=35.67 E-value=29 Score=32.95 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=33.3
Q ss_pred HHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhheeEEEeCCCc
Q 025761 115 FFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIYKNANK 162 (248)
Q Consensus 115 i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~Ly~~Y~~~k~ 162 (248)
.+.+--++.|--|....+....+..|.+|+.++..-.+.+.-|++++.
T Consensus 247 a~~~Gi~la~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~~ 294 (325)
T TIGR00341 247 AVATGILLVISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAYRY 294 (325)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 344444555656666667778888999999998777666666666554
No 28
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=34.50 E-value=1.9e+02 Score=22.21 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=9.7
Q ss_pred HHHHhhhcCCCchhhhHHHHHH
Q 025761 31 IILFITYAPKGSRNSTVKLFVS 52 (248)
Q Consensus 31 i~vf~~ya~~k~r~~~~kl~~~ 52 (248)
+..||.++.+|+-+.+.-++..
T Consensus 10 i~~~YiF~aPksIr~Tln~i~~ 31 (81)
T PF11364_consen 10 ILLYYIFMAPKSIRGTLNMIGL 31 (81)
T ss_pred HHHHHHHHCcHHHHhhhhHHHH
Confidence 3444455444443334444433
No 29
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=31.90 E-value=2.5e+02 Score=25.75 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHhhhcCCCchhh---hHHHHHHHHHHHHHHHHhhheeeecCcchhhhhhHHHHHHHHHHhhhhHHHH
Q 025761 21 CFGCVIETIYIILFITYAPKGSRNS---TVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIV 97 (248)
Q Consensus 21 ~~G~vl~~iYi~vf~~ya~~k~r~~---~~kl~~~~~~~~~~~i~l~t~~~~~~~~~~~ilG~ia~v~ti~mf~SPL~~i 97 (248)
+..+.+.+++++ ++=|+....... ...-.+-.++++++.+++-+.+ ++..+++..++..+.+..+ +|.+
T Consensus 141 Als~~l~l~~l~-~~DY~~~~~~~~~~~~~~~~lSlNaAl~asvvLASRL----~s~~~VF~lll~ai~lF~l---~P~~ 212 (282)
T PF06432_consen 141 ALSFWLFLLHLL-FHDYSYSNSYVSRGISLPSSLSLNAALFASVVLASRL----PSTLHVFALLLFAIQLFAL---FPIF 212 (282)
T ss_pred HHHHHHHHHHHH-HHhcccccccccccCCCCCcchHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHH---hHHH
Confidence 345566666665 444532211100 0111123456666766666654 3445566666555555544 7888
Q ss_pred HHhHhcCCCCc
Q 025761 98 AQVIRTKSVEF 108 (248)
Q Consensus 98 ~~VirtKS~~~ 108 (248)
++-+|+++...
T Consensus 213 r~~l~~~s~~~ 223 (282)
T PF06432_consen 213 RRRLRRHSPNA 223 (282)
T ss_pred HHHHHHhCchH
Confidence 99999998653
No 30
>PRK11387 S-methylmethionine transporter; Provisional
Probab=30.54 E-value=89 Score=30.18 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=39.5
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHhHhcCC-C----C-------ccchHHHHHHHHhhHHhhhhhcccCCeeeEechhH
Q 025761 75 ILILGWICVAVSVSVFAAPLSIVAQVIRTKS-V----E-------FMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIV 142 (248)
Q Consensus 75 ~~ilG~ia~v~ti~mf~SPL~~i~~VirtKS-~----~-------~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~ 142 (248)
-..+..+++...++.|+.+....-+..|++. . . ..|..+.++...+..++. +.. .+..-.....+
T Consensus 364 ~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~ 440 (471)
T PRK11387 364 FVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACV--GLA-FDPSQRIALWC 440 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHH--HHH-hhHHHHHHHHH
Confidence 3445556666666667766433222222211 0 1 234445555444433333 221 11111112345
Q ss_pred HHHHHHHHhheeEEEeCCCcccc
Q 025761 143 GFLLGLTQMLLYVIYKNANKVII 165 (248)
Q Consensus 143 G~~l~~~ql~Ly~~Y~~~k~~~~ 165 (248)
|..+-+.-+..|..+++++++.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T PRK11387 441 GIPFVALCYGAYYLTQRLKRNMT 463 (471)
T ss_pred HHHHHHHHHHHHHHhcccccccc
Confidence 55555566666666666555443
No 31
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.43 E-value=17 Score=34.36 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhccc-CCeeeEechhHHHHHHHHHh
Q 025761 73 TRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQ-KDICVALPNIVGFLLGLTQM 151 (248)
Q Consensus 73 ~~~~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~-~D~fI~ipN~~G~~l~~~ql 151 (248)
-+.-++|++--++.+.+-+.-..-|. .+|+--++.-.++-++..|+-.++-++-+++. ..||-+.....=+++- --
T Consensus 102 GQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LF--la 178 (381)
T PF05297_consen 102 GQTLFVGIVILFLCCLLALGVWFYMW-LLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLF--LA 178 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 34556676544443333322222222 45555555545555555555566666666554 4677666665554432 22
Q ss_pred heeEEEeCCCc
Q 025761 152 LLYVIYKNANK 162 (248)
Q Consensus 152 ~Ly~~Y~~~k~ 162 (248)
++.|+|-...+
T Consensus 179 iLIWlY~H~~~ 189 (381)
T PF05297_consen 179 ILIWLYVHDQR 189 (381)
T ss_dssp -----------
T ss_pred HHHHHHhcCCC
Confidence 23455544443
No 32
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=29.33 E-value=53 Score=29.35 Aligned_cols=24 Identities=17% Similarity=0.533 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHH
Q 025761 76 LILGWICVAVSVSVFAAPLSIVAQ 99 (248)
Q Consensus 76 ~ilG~ia~v~ti~mf~SPL~~i~~ 99 (248)
.++|++...+.+.+..+|+..+..
T Consensus 187 R~~G~llmf~G~~~~~~~l~~l~~ 210 (248)
T PF07787_consen 187 RFIGWLLMFIGFFLLFSPLYTLVD 210 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777766543
No 33
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.94 E-value=1.6e+02 Score=25.43 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCeeeEechhHHHHHHHHHhheeEEEeCCCc
Q 025761 132 KDICVALPNIVGFLLGLTQMLLYVIYKNANK 162 (248)
Q Consensus 132 ~D~fI~ipN~~G~~l~~~ql~Ly~~Y~~~k~ 162 (248)
.-....+|+...++++++-+++++.++++-+
T Consensus 172 ~~inp~l~~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 172 PVINPVLPPWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred ccCCcCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345678999999999999998877765544
No 34
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=26.17 E-value=3.6e+02 Score=21.88 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=9.4
Q ss_pred HHHHHhHhcCCCCccchHHH
Q 025761 95 SIVAQVIRTKSVEFMPFILS 114 (248)
Q Consensus 95 ~~i~~VirtKS~~~mp~~l~ 114 (248)
..++.. |+|+.+.-.+...
T Consensus 140 ~~i~~~-~~~~~~a~~~~~~ 158 (205)
T PF07695_consen 140 IIIYAW-RKGNRPARYFLIG 158 (205)
T ss_pred HHHHHH-HcCCccHHHHHHH
Confidence 334444 6666655444433
No 35
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=24.78 E-value=4.7e+02 Score=23.89 Aligned_cols=20 Identities=5% Similarity=0.250 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHhhhcCCC
Q 025761 22 FGCVIETIYIILFITYAPKG 41 (248)
Q Consensus 22 ~G~vl~~iYi~vf~~ya~~k 41 (248)
.+.+++..|...+.+|..+|
T Consensus 178 p~~i~~~~~~~~~~~~~~~~ 197 (351)
T PF03600_consen 178 PAVIVGLLVLIFILYFLFRK 197 (351)
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 56667777755555554333
No 36
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.99 E-value=33 Score=28.25 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=53.4
Q ss_pred HhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhccc--CCeeeEechhHHHHHHHHHhheeEEEe
Q 025761 89 VFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQ--KDICVALPNIVGFLLGLTQMLLYVIYK 158 (248)
Q Consensus 89 mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~--~D~fI~ipN~~G~~l~~~ql~Ly~~Y~ 158 (248)
-++-|+..+.+ -+||-+-++-.|..+.++-+.+.+-|.+.+ +|+.++...+.......+|..=|..|.
T Consensus 35 NwGlpiAal~D--mkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~~ 104 (132)
T KOG1590|consen 35 NWGLPIAALVD--MKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSRFLNYN 104 (132)
T ss_pred hccchHHHHHh--ccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35556666555 368888899999999999999999999887 688888888888888888877666553
No 37
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=22.65 E-value=1.5e+02 Score=23.52 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=24.5
Q ss_pred eecCcchhhhhhHHHHHHHHHHhhhhHHHHH
Q 025761 68 LATDSTRILILGWICVAVSVSVFAAPLSIVA 98 (248)
Q Consensus 68 ~~~~~~~~~ilG~ia~v~ti~mf~SPL~~i~ 98 (248)
..++.....++.+++..+-+++.++|+..+-
T Consensus 23 llP~~~~kkYvr~v~Gl~Li~~il~Pi~~l~ 53 (106)
T TIGR02896 23 LLPNSSLKKYVKFVVGLILMVVILNPIIKLL 53 (106)
T ss_pred HCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888889999999986544
No 38
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.57 E-value=2e+02 Score=28.83 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHh
Q 025761 78 LGWICVAVSVSVFAAPLSIVAQV 100 (248)
Q Consensus 78 lG~ia~v~ti~mf~SPL~~i~~V 100 (248)
+.++|..++.+||...++..-+|
T Consensus 295 VPllg~fFsc~m~iv~~SvvfTv 317 (486)
T KOG3646|consen 295 VPLLGAFFSCCMFIVAASVVFTV 317 (486)
T ss_pred ccHHHHHHHHHHHHHHhhheeEE
Confidence 33444444444444444444333
No 39
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=22.51 E-value=5.4e+02 Score=22.70 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=45.3
Q ss_pred hhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhhe----eEEEeC
Q 025761 90 FAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLL----YVIYKN 159 (248)
Q Consensus 90 f~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~L----y~~Y~~ 159 (248)
-++=|||+...-|...+|+|...-.+++.+--.+..-|.+...-.-+--.--+.+..|++|-.+ +++|.+
T Consensus 129 SVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~DFf~iYyr 202 (214)
T COG5196 129 SVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFFAIYYR 202 (214)
T ss_pred HHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHHhHHhhhh
Confidence 3455899999999999999998888888887778887777653221111122333444555554 455554
No 40
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.32 E-value=3.7e+02 Score=23.96 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=38.7
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHH--HhHhcCCCCccchHHHH--HHHHhhHHhhhhhcccCCee-----------eEec
Q 025761 75 ILILGWICVAVSVSVFAAPLSIVA--QVIRTKSVEFMPFILSF--FLTLSAIMWFAYGLFQKDIC-----------VALP 139 (248)
Q Consensus 75 ~~ilG~ia~v~ti~mf~SPL~~i~--~VirtKS~~~mp~~l~i--~~~ln~~lW~~YGll~~D~f-----------I~ip 139 (248)
...+|+++.++..+.++..+.... ..-++.....+|..-++ ..++-++.=...|+.-+-.| =.+.
T Consensus 97 HSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~l~ 176 (214)
T cd08764 97 HSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGVLG 176 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHHHH
Confidence 456888888877777766664421 12222233444544332 12222222223344332111 1246
Q ss_pred hhHHHHHHHHHhhee
Q 025761 140 NIVGFLLGLTQMLLY 154 (248)
Q Consensus 140 N~~G~~l~~~ql~Ly 154 (248)
|.+|+++-+.-..+.
T Consensus 177 N~~gl~~~~fg~~V~ 191 (214)
T cd08764 177 NFIGIVLVIFGGLVV 191 (214)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999987655544433
No 41
>PHA02246 hypothetical protein
Probab=21.39 E-value=2.9e+02 Score=24.03 Aligned_cols=66 Identities=15% Similarity=0.287 Sum_probs=40.3
Q ss_pred hHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcccCC--eeeEechhHHHHHHHHHhheeEEEeCC
Q 025761 93 PLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKD--ICVALPNIVGFLLGLTQMLLYVIYKNA 160 (248)
Q Consensus 93 PL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~~D--~fI~ipN~~G~~l~~~ql~Ly~~Y~~~ 160 (248)
-.|+++...|.|++.+++-+ +.-.......-.+|-++..| .|=+++=+....+|++.+.+ ..||++
T Consensus 20 YipgL~slvk~~nv~GvS~~-FWYLi~~tvgiSfyNlL~T~~~~fqi~svg~nl~lgivcLlv-~~~rkk 87 (192)
T PHA02246 20 YIPGLVALVKAESVKGVSNY-FWYLIVATVGISFYNLLLTDASVFQIVSVGLNLTLGIVCLLV-ASYRKK 87 (192)
T ss_pred hhhhHHHHhhhcccccHHHH-HHHHHHHHHHHHHHHHHhcCCceEEEeeeehhhhhhhhheee-ehhhcc
Confidence 37888999999999988742 23333445566778877654 34444444555555555433 455544
No 42
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.48 E-value=1.4e+02 Score=23.52 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=38.9
Q ss_pred HHhHhcCC--CCccchHHHHHHHHhhHHhhhhhcccCCeeeEechhHHHHHHHHHhheeEEEeCCCcccc
Q 025761 98 AQVIRTKS--VEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIYKNANKVII 165 (248)
Q Consensus 98 ~~VirtKS--~~~mp~~l~i~~~ln~~lW~~YGll~~D~fI~ipN~~G~~l~~~ql~Ly~~Y~~~k~~~~ 165 (248)
.-|.||+. ...+|+ ++..+..++=+++..+.+|.-+..-=..|.+.|+..-.++=.+.+|.++..
T Consensus 23 q~IkkT~~v~~K~iPl---Is~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~ 89 (93)
T PF06946_consen 23 QAIKKTKVVPNKWIPL---ISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYG 89 (93)
T ss_pred HHHHHhccCCcchhhH---HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcC
Confidence 34445553 345555 555555555556666666654443334588888888888877766655544
No 43
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=20.26 E-value=4.7e+02 Score=21.15 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=8.9
Q ss_pred ehhhHHHHHHHHHHHh
Q 025761 20 NCFGCVIETIYIILFI 35 (248)
Q Consensus 20 N~~G~vl~~iYi~vf~ 35 (248)
..+|++++++.+++-+
T Consensus 20 y~iGFvLsIiLT~ipF 35 (111)
T COG3125 20 YLIGFVLSIILTLIPF 35 (111)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666644433
No 44
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=20.19 E-value=1.7e+02 Score=26.85 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=35.6
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHhHhcC------CCCccchHHH--H-HHHHhhHHhhhhhcccCCeeeE
Q 025761 75 ILILGWICVAVSVSVFAAPLSIVAQVIRTK------SVEFMPFILS--F-FLTLSAIMWFAYGLFQKDICVA 137 (248)
Q Consensus 75 ~~ilG~ia~v~ti~mf~SPL~~i~~VirtK------S~~~mp~~l~--i-~~~ln~~lW~~YGll~~D~fI~ 137 (248)
++++|.+.++++=++|++-+.=+.-+..+. |...+++..+ . ..+.+.+.+++|.+..+|-+-+
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v 251 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKV 251 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 578999999999888887653333333332 3455543322 2 2333444555666666554433
No 45
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=20.11 E-value=7.8e+02 Score=25.23 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=48.1
Q ss_pred cCcchhhhhhHHHHHHHHHHhhhhHHHHHHhHhcCCCCccchHHHHHHHHhhHHhhhhhccc
Q 025761 70 TDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQ 131 (248)
Q Consensus 70 ~~~~~~~ilG~ia~v~ti~mf~SPL~~i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~ 131 (248)
+..-..-++..+...+-.+-|.-.+||+--=.|=||++.+|.-++.-=++|.++==++++.+
T Consensus 461 hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVI 522 (592)
T KOG2489|consen 461 HKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVI 522 (592)
T ss_pred cccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667777777777777888899999999999999999999988888887654444443
Done!