Query 025761
Match_columns 248
No_of_seqs 228 out of 1150
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 32.9 69 0.0023 28.5 5.9 29 76-104 351-379 (445)
2 4djk_A Probable glutamate/gamm 21.2 92 0.0032 28.2 4.5 26 76-101 368-393 (511)
3 3tlw_A GLR4197 protein, GLIC; 19.6 4.3E+02 0.015 22.7 9.8 22 74-95 255-276 (321)
4 3gia_A Uncharacterized protein 16.5 1.6E+02 0.0056 25.9 5.0 15 79-93 344-358 (444)
5 2nr1_A NR1 M2, M2; receptor, s 12.2 50 0.0017 19.3 0.2 14 119-132 9-22 (27)
6 2b2h_A AMT-1, ammonium transpo 7.2 2.8E+02 0.0094 25.7 3.2 32 100-131 30-61 (399)
7 3bz1_X Photosystem II PSBX pro 5.7 2.5E+02 0.0085 18.7 1.4 22 104-125 5-26 (50)
8 3dh4_A Sodium/glucose cotransp 4.3 1.4E+03 0.05 20.9 6.4 21 133-153 447-467 (530)
9 3bkd_A Transmembrane domain of 3.8 1.4E+02 0.0049 17.1 -0.7 14 132-145 2-15 (26)
10 1u7g_A Probable ammonium trans 3.4 4.7E+02 0.016 24.0 2.0 30 101-130 36-65 (385)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=32.95 E-value=69 Score=28.46 Aligned_cols=29 Identities=3% Similarity=0.010 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHhHhcC
Q 025761 76 LILGWICVAVSVSVFAAPLSIVAQVIRTK 104 (248)
Q Consensus 76 ~ilG~ia~v~ti~mf~SPL~~i~~VirtK 104 (248)
+.+..+++......|..+.....+..|++
T Consensus 351 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 351 GLVSSVSVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44444555555555655554444444433
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=21.23 E-value=92 Score=28.23 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHhH
Q 025761 76 LILGWICVAVSVSVFAAPLSIVAQVI 101 (248)
Q Consensus 76 ~ilG~ia~v~ti~mf~SPL~~i~~Vi 101 (248)
+.+.-++++...+.|+.+...+.+..
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~~~~~r 393 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIGYIVLV 393 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555566666644333333
No 3
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=19.58 E-value=4.3e+02 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhHH
Q 025761 74 RILILGWICVAVSVSVFAAPLS 95 (248)
Q Consensus 74 ~~~ilG~ia~v~ti~mf~SPL~ 95 (248)
....+|..-.+.-+++++|=+.
T Consensus 255 ~vp~i~~~~~~~~~~v~~sll~ 276 (321)
T 3tlw_A 255 YMTYTGAIIFMIYLFYFVAVIE 276 (321)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3566777666666666666553
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=16.55 E-value=1.6e+02 Score=25.94 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHhhhh
Q 025761 79 GWICVAVSVSVFAAP 93 (248)
Q Consensus 79 G~ia~v~ti~mf~SP 93 (248)
.-++++.....|..+
T Consensus 344 ~~~~~~~~~~~~~~~ 358 (444)
T 3gia_A 344 ASITSAVFMVIYLFV 358 (444)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 5
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=12.22 E-value=50 Score=19.32 Aligned_cols=14 Identities=43% Similarity=1.113 Sum_probs=10.6
Q ss_pred HhhHHhhhhhcccC
Q 025761 119 LSAIMWFAYGLFQK 132 (248)
Q Consensus 119 ln~~lW~~YGll~~ 132 (248)
+.+.+|+.+|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 56778999997753
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=7.16 E-value=2.8e+02 Score=25.71 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=23.5
Q ss_pred hHhcCCCCccchHHHHHHHHhhHHhhhhhccc
Q 025761 100 VIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQ 131 (248)
Q Consensus 100 VirtKS~~~mp~~l~i~~~ln~~lW~~YGll~ 131 (248)
..|+|++-.+=..-+....+.+++|.++|+-.
T Consensus 30 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~l 61 (399)
T 2b2h_A 30 MVRRKNAVNMIALSFISLIITVLLWIFYGYSV 61 (399)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778877766666677888888999877643
No 7
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=5.71 E-value=2.5e+02 Score=18.65 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=12.7
Q ss_pred CCCCccchHHHHHHHHhhHHhh
Q 025761 104 KSVEFMPFILSFFLTLSAIMWF 125 (248)
Q Consensus 104 KS~~~mp~~l~i~~~ln~~lW~ 125 (248)
.|..-+-..|++.+|+.+++|-
T Consensus 5 ~~~~l~~mTpSL~NFl~SlvaG 26 (50)
T 3bz1_X 5 ASSLLLTITPSLKGFFIGLLSG 26 (50)
T ss_dssp ------CCCHHHHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHHHH
Confidence 3344445667888999988884
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=4.29 E-value=1.4e+03 Score=20.89 Aligned_cols=21 Identities=5% Similarity=0.081 Sum_probs=11.5
Q ss_pred CeeeEechhHHHHHHHHHhhe
Q 025761 133 DICVALPNIVGFLLGLTQMLL 153 (248)
Q Consensus 133 D~fI~ipN~~G~~l~~~ql~L 153 (248)
+....-+..++++++++-..+
T Consensus 447 ~~~~~~~~~~~~~~~~i~~v~ 467 (530)
T 3dh4_A 447 SMPFMDQMLYTLLFTMVVIAF 467 (530)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 333344566777766655444
No 9
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=3.80 E-value=1.4e+02 Score=17.07 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=10.2
Q ss_pred CCeeeEechhHHHH
Q 025761 132 KDICVALPNIVGFL 145 (248)
Q Consensus 132 ~D~fI~ipN~~G~~ 145 (248)
+|..++..|++|++
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 46667778888874
No 10
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=3.44 E-value=4.7e+02 Score=23.97 Aligned_cols=30 Identities=33% Similarity=0.528 Sum_probs=21.1
Q ss_pred HhcCCCCccchHHHHHHHHhhHHhhhhhcc
Q 025761 101 IRTKSVEFMPFILSFFLTLSAIMWFAYGLF 130 (248)
Q Consensus 101 irtKS~~~mp~~l~i~~~ln~~lW~~YGll 130 (248)
.|+|++-.+=..-.....+.+++|.++|+-
T Consensus 36 vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~ 65 (385)
T 1u7g_A 36 IRGKNVLSMLTQVTVTFALVCILWVVYGYS 65 (385)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777666555556777888888887754
Done!