Query 025761
Match_columns 248
No_of_seqs 228 out of 1150
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 17:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025761.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025761hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 17.1 36 0.0026 18.6 1.9 18 20-37 8-25 (30)
2 d1xioa_ f.13.1.1 (A:) Sensory 10.6 3.2E+02 0.023 20.5 8.8 33 97-130 150-182 (226)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 4.8 2.3E+02 0.017 15.2 2.2 14 22-35 3-16 (32)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 4.6 1.9E+02 0.014 16.4 1.7 15 19-33 3-17 (36)
5 d1rzhh2 f.23.10.1 (H:11-35) Ph 4.1 1.4E+02 0.01 15.6 0.8 10 120-129 4-13 (26)
6 d1vf5c3 f.23.23.1 (C:250-286) 3.3 4.4E+02 0.032 14.8 3.3 17 94-110 18-34 (37)
7 d1fx0b2 b.49.1.1 (B:19-97) F1 3.0 2E+02 0.015 18.9 1.1 11 229-239 45-55 (79)
8 d1rkla_ f.23.30.1 (A:) Oligosa 2.8 1.2E+02 0.0089 17.0 -0.3 19 140-158 8-26 (36)
9 d1jfia_ a.22.1.3 (A:) Negative 2.7 6E+02 0.044 15.0 3.9 11 93-103 4-14 (66)
10 d1a8oa_ a.28.3.1 (A:) HIV caps 2.6 2.4E+02 0.017 17.7 1.0 9 203-211 2-10 (70)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.10 E-value=36 Score=18.57 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=12.5
Q ss_pred ehhhHHHHHHHHHHHhhh
Q 025761 20 NCFGCVIETIYIILFITY 37 (248)
Q Consensus 20 N~~G~vl~~iYi~vf~~y 37 (248)
-++.|+++++|..+|++-
T Consensus 8 ~ifac~i~lfffaiffre 25 (30)
T d2axtt1 8 FIFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 356777777777777653
No 2
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=10.56 E-value=3.2e+02 Score=20.53 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=17.7
Q ss_pred HHHhHhcCCCCccchHHHHHHHHhhHHhhhhhcc
Q 025761 97 VAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLF 130 (248)
Q Consensus 97 i~~VirtKS~~~mp~~l~i~~~ln~~lW~~YGll 130 (248)
.++-.++++.+ ..-.......+..++|.+|++.
T Consensus 150 ~~~~~~~~~~~-~~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 150 LRAKTRTQSSE-LANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHTTSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444332 2223333455567899999865
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.78 E-value=2.3e+02 Score=15.21 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHh
Q 025761 22 FGCVIETIYIILFI 35 (248)
Q Consensus 22 ~G~vl~~iYi~vf~ 35 (248)
.|.++.++|+..|+
T Consensus 3 lgavfyivfialff 16 (32)
T d2e74e1 3 LGAVFYIVFIALFF 16 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHH
Confidence 45555555544443
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.57 E-value=1.9e+02 Score=16.37 Aligned_cols=15 Identities=13% Similarity=0.667 Sum_probs=8.7
Q ss_pred eehhhHHHHHHHHHH
Q 025761 19 INCFGCVIETIYIIL 33 (248)
Q Consensus 19 vN~~G~vl~~iYi~v 33 (248)
+|..|++....|+++
T Consensus 3 vN~Lg~iAt~LFilv 17 (36)
T d2axtm1 3 VNQLGLIATALFVLV 17 (36)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 466666666555443
No 5
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.06 E-value=1.4e+02 Score=15.63 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=5.3
Q ss_pred hhHHhhhhhc
Q 025761 120 SAIMWFAYGL 129 (248)
Q Consensus 120 n~~lW~~YGl 129 (248)
+..+|++|++
T Consensus 4 slaiw~fw~f 13 (26)
T d1rzhh2 4 SLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445666554
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.35 E-value=4.4e+02 Score=14.81 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=11.6
Q ss_pred HHHHHHhHhcCCCCccc
Q 025761 94 LSIVAQVIRTKSVEFMP 110 (248)
Q Consensus 94 L~~i~~VirtKS~~~mp 110 (248)
+.++--|+|+|..|-+.
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667788888777543
No 7
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=3.05 E-value=2e+02 Score=18.88 Aligned_cols=11 Identities=36% Similarity=0.320 Sum_probs=8.5
Q ss_pred cceeeccCCCC
Q 025761 229 LQLQQHNDNNN 239 (248)
Q Consensus 229 ~~~~~~~~~~~ 239 (248)
+.+|||-+++.
T Consensus 45 lEV~qhlg~~~ 55 (79)
T d1fx0b2 45 CEVQQLLGNNR 55 (79)
T ss_dssp EEEEECCSSSC
T ss_pred EEEeEccCCCE
Confidence 67899988763
No 8
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.80 E-value=1.2e+02 Score=17.02 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhheeEEEe
Q 025761 140 NIVGFLLGLTQMLLYVIYK 158 (248)
Q Consensus 140 N~~G~~l~~~ql~Ly~~Y~ 158 (248)
|.+.+.+++..+.+..+|.
T Consensus 8 n~~~i~fgi~mmtliviyh 26 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYH 26 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHh
Confidence 7788888888888887774
No 9
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.71 E-value=6e+02 Score=15.04 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=9.5
Q ss_pred hHHHHHHhHhc
Q 025761 93 PLSIVAQVIRT 103 (248)
Q Consensus 93 PL~~i~~Virt 103 (248)
|++.+++++|.
T Consensus 4 P~srVkkimk~ 14 (66)
T d1jfia_ 4 PPARIKKIMQT 14 (66)
T ss_dssp CHHHHHHHHTT
T ss_pred ChHHHHHHHhc
Confidence 88899999994
No 10
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=2.60 E-value=2.4e+02 Score=17.74 Aligned_cols=9 Identities=67% Similarity=1.143 Sum_probs=7.0
Q ss_pred cCCCCCCcc
Q 025761 203 DVNQGPKEN 211 (248)
Q Consensus 203 ~~~~~~~~~ 211 (248)
||+||++|.
T Consensus 2 dIkQgpkEp 10 (70)
T d1a8oa_ 2 DIRQGPKEP 10 (70)
T ss_dssp CCCCCTTSC
T ss_pred CCccCCCCC
Confidence 578898883
Done!