Your job contains 1 sequence.
>025762
MRANFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV
KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN
ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME
TYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGF
GLSLTYSI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025762
(248 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 548 6.3e-53 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 540 4.4e-52 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 531 4.0e-51 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 530 5.1e-51 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 524 2.2e-50 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 524 2.2e-50 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 524 2.2e-50 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 523 2.8e-50 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 523 2.8e-50 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 523 2.8e-50 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 515 2.0e-49 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 514 2.5e-49 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 514 2.5e-49 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 512 4.1e-49 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 512 4.1e-49 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 497 1.6e-47 1
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 494 3.3e-47 1
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 463 6.4e-44 1
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 461 1.0e-43 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 448 2.5e-42 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 448 2.5e-42 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 415 7.8e-39 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 415 7.8e-39 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 413 1.3e-38 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 404 1.1e-37 1
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 404 1.1e-37 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 387 7.2e-36 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 380 4.0e-35 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 376 1.1e-34 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 375 1.3e-34 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 371 3.6e-34 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 371 3.6e-34 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 370 4.6e-34 1
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 369 5.8e-34 1
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 368 7.4e-34 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 368 7.4e-34 1
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 367 9.5e-34 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 367 9.5e-34 1
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 365 1.5e-33 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 365 1.5e-33 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 365 1.5e-33 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 365 1.5e-33 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 363 2.5e-33 1
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 363 2.5e-33 1
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 362 3.2e-33 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 362 3.2e-33 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 362 3.2e-33 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 362 3.2e-33 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 361 4.1e-33 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 359 6.7e-33 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 358 8.5e-33 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 356 1.4e-32 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 356 1.4e-32 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 355 1.8e-32 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 353 2.9e-32 1
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 346 1.6e-31 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 333 3.8e-30 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 333 3.8e-30 1
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 313 5.0e-28 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 305 3.5e-27 1
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 160 9.8e-20 2
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 163 2.0e-19 2
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 137 9.4e-17 2
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 203 2.3e-16 1
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 134 1.2e-15 2
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 134 2.4e-15 2
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 133 3.3e-15 2
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 132 3.6e-15 2
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 132 3.6e-15 2
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 130 8.1e-15 2
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 130 8.1e-15 2
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 124 1.5e-14 2
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 135 2.3e-14 2
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 131 1.4e-13 2
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 130 4.5e-13 2
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 125 6.2e-13 2
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 109 3.2e-11 2
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 109 3.2e-11 2
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 120 3.9e-10 2
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 120 3.9e-10 2
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 153 9.4e-09 1
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 148 1.9e-08 1
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 144 6.4e-08 1
TIGR_CMR|BA_4703 - symbol:BA_4703 "ATP-dependent protease... 137 1.1e-06 1
TAIR|locus:2032432 - symbol:AT1G24290 species:3702 "Arabi... 130 7.0e-06 1
TAIR|locus:2012497 - symbol:AT1G14460 species:3702 "Arabi... 105 7.5e-06 2
UNIPROTKB|Q0C591 - symbol:dnaX "DNA polymerase III, subun... 111 1.1e-05 2
TIGR_CMR|CPS_2757 - symbol:CPS_2757 "ATPase, AAA family" ... 126 2.0e-05 1
UNIPROTKB|Q8WVB6 - symbol:CHTF18 "Chromosome transmission... 128 2.8e-05 1
UNIPROTKB|E7EXA6 - symbol:CHTF18 "Chromosome transmission... 128 3.5e-05 1
UNIPROTKB|F8WCC1 - symbol:CHTF18 "Chromosome transmission... 123 3.8e-05 1
RGD|1310473 - symbol:Chtf18 "CTF18, chromosome transmissi... 125 6.1e-05 1
ASPGD|ASPL0000029025 - symbol:AN5617 species:162425 "Emer... 122 6.1e-05 1
MGI|MGI:2384887 - symbol:Chtf18 "CTF18, chromosome transm... 124 7.9e-05 1
TIGR_CMR|CBU_1570 - symbol:CBU_1570 "Holliday junction DN... 116 0.00016 1
POMBASE|SPBC902.02c - symbol:ctf18 "RFC-like complex subu... 107 0.00017 2
UNIPROTKB|F1RG33 - symbol:CHTF18 "Uncharacterized protein... 121 0.00018 1
UNIPROTKB|I3LC39 - symbol:CHTF18 "Uncharacterized protein... 121 0.00019 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 118 0.00020 1
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 118 0.00021 1
WARNING: Descriptions of 9 database sequences were not reported due to the
limiting value of parameter V = 100.
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 100/150 (66%), Positives = 122/150 (81%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ QE ++VLT T+++ N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 25 PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 85 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSM 144
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTME Y+ +TRF ICNYI+R
Sbjct: 145 TNDAQSALRRTMENYAGITRFVLICNYITR 174
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 103/170 (60%), Positives = 127/170 (74%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P K ++ + A + QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYG
Sbjct: 7 PNKKR-KISKLAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYG 65
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPGTGKT+T LA+ +L+GP+L KSR+LELNASD+RGI++VR K+K FA + V +
Sbjct: 66 PPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHD 125
Query: 150 --GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 126 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 104/180 (57%), Positives = 133/180 (73%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
FS+++ P + ++E R QPWVEKYRPK + DVA Q+ +VL TL+ +N
Sbjct: 16 FSSSKQKPTEGKEEQSRL--------QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNL 67
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR K+K FA V +
Sbjct: 68 PHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARVQL 127
Query: 143 G--SG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+G + YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 128 SHPTGLDAEYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 187
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 111/170 (65%), Positives = 127/170 (74%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
SS S E K K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LF
Sbjct: 23 SSSAGSSGETK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 76
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R
Sbjct: 77 YGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSR 135
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR
Sbjct: 136 SDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR 185
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 110/181 (60%), Positives = 129/181 (71%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 R 197
R
Sbjct: 185 R 185
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 110/181 (60%), Positives = 129/181 (71%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 R 197
R
Sbjct: 185 R 185
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 110/181 (60%), Positives = 129/181 (71%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 R 197
R
Sbjct: 185 R 185
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 103/148 (69%), Positives = 118/148 (79%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 157
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME SK TRF ICNY+SR
Sbjct: 158 AAQAALRRTMEKESKTTRFCLICNYVSR 185
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 103/148 (69%), Positives = 118/148 (79%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 38 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 98 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 156
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME SK TRF ICNY+SR
Sbjct: 157 AAQAALRRTMEKESKTTRFCLICNYVSR 184
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 108/165 (65%), Positives = 125/165 (75%)
Query: 33 SEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPG 92
S E K K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPG
Sbjct: 28 SSGETK-KVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPG 81
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
TGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G P
Sbjct: 82 TGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKP 140
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
CPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR
Sbjct: 141 CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR 185
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 102/149 (68%), Positives = 117/149 (78%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-GSGQRRGGYPCPPYKIIILDEADSMT 168
EL++ RVLELNASD+RGI VVR K+K FA + V GS G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEADSMT 158
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME SK TRF ICNY+SR
Sbjct: 159 SAAQAALRRTMEKESKTTRFCLICNYVSR 187
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 103/159 (64%), Positives = 121/159 (76%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTA-SGSRADGKVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ILDEADSMT AQ ALRRTME SK TRF ICNYISR
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISR 183
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 103/159 (64%), Positives = 121/159 (76%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTA-SGSRADGKVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ILDEADSMT AQ ALRRTME SK TRF ICNYISR
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISR 183
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 97/159 (61%), Positives = 124/159 (77%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K + S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG PGTGKT+T
Sbjct: 9 KKTEQEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTST 68
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + GYPCPP+KI
Sbjct: 69 ILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDGYPCPPFKI 126
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
IILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++R
Sbjct: 127 IILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTR 165
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 105/176 (59%), Positives = 126/176 (71%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K S++QS + Q + PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GP+LY+ RVLELNASD+RGI VVR K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SR
Sbjct: 126 V-AGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSR 180
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 97/152 (63%), Positives = 114/152 (75%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT DAQ ALRRT+ET SK TRF +CNYISR
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISR 158
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 102/177 (57%), Positives = 124/177 (70%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKSQGTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SR
Sbjct: 121 SASS-VRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSR 176
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 106/185 (57%), Positives = 127/185 (68%)
Query: 16 SPNFTQKFSTTQ---SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRV 72
+P T+ ST + SS S E K K+ PV PWVEKYRPK V +VA QEEVV V
Sbjct: 8 TPVSTKPQSTKERGISSSAGSSVESK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAV 61
Query: 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132
L +LE A+ P++LFYGPPGTGKT+T LA A +LFGP L++ RVLELNASD+RGI
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPALFRLRVLELNASDERGIQ---- 117
Query: 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
K+K FA + V SG R G PCP +K +ILDEADSMT A+ ALR+TME SK TRF C
Sbjct: 118 KVKNFAQLTV-SGSRSDGKPCPSFKTVILDEADSMTSAAR-ALRQTMEKESKTTRFCLFC 175
Query: 193 NYISR 197
NY+SR
Sbjct: 176 NYVSR 180
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 98/163 (60%), Positives = 116/163 (71%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTM
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTM 167
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 83/150 (55%), Positives = 106/150 (70%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
TEDAQ+ALRR +E YS VTRF ICNYI +
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHK 154
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 83/150 (55%), Positives = 106/150 (70%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
TEDAQ+ALRR +E YS VTRF ICNYI +
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHK 154
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 85/162 (52%), Positives = 109/162 (67%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKL-- 119
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR
Sbjct: 120 -KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSR 160
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 85/162 (52%), Positives = 109/162 (67%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKL-- 119
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR
Sbjct: 120 -KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSR 160
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 85/175 (48%), Positives = 111/175 (63%)
Query: 24 STTQSSPEKSEDEVK-RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
S T S E S + KM S+ PWVEKYRP ++ ++ E++V+ LT +E
Sbjct: 3 SRTGSREEHSLQFLNLTKMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTL 62
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-A 141
PH+LFYGPPGTGKTTT LA A Q++ P S VLELNASD+RGI+VVR I FA
Sbjct: 63 PHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKG 122
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
+ + P+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++
Sbjct: 123 LQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLA 177
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 84/164 (51%), Positives = 108/164 (65%)
Query: 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
K + +++RK S PWVEKYRPK + D+ E++ + +T ++ PH+LFYGPP
Sbjct: 11 KFKTDIERKQF----ESLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPP 66
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
GTGKT+T AIA +L+G Y VLELNASDDRGI+VVR +IKTFA+
Sbjct: 67 GTGKTSTIQAIARKLYGDN-YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTT---- 121
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195
PYK+IILDEADSMT AQ ALRR +E Y+K TRF +CNY+
Sbjct: 122 --VPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYV 163
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 80/148 (54%), Positives = 102/148 (68%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSK 151
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 77/152 (50%), Positives = 107/152 (70%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP ++DV ++++ L + + PHMLFYGPPGTGKT+T LA A +
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP Y+++++ELNASDDRGI+ VR +IK FA+ R + +K+IILDEAD
Sbjct: 80 IYGPN-YRNQLMELNASDDRGIDAVREQIKNFAST-------RQIF-ASTFKMIILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+MT AQNALRR +E Y+K RF ICNYI++
Sbjct: 131 AMTLAAQNALRRVIEKYTKNVRFCIICNYINK 162
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 92/219 (42%), Positives = 126/219 (57%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
+ Q S + + + KR A PV Q + PWVEKYRP + DV+ ++++ + +E
Sbjct: 17 NAVQFSSDNTGAKHKRAAADLPVEAQDNLPWVEKYRPNTLDDVSGHKDILATINRFVEAN 76
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA- 139
PH+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 77 QLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFAST 136
Query: 140 --VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--- 194
+ + G +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 137 KQIFSMAPSATGKSSLASFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHK 196
Query: 195 -----ISRCTXXXXXXXXXXXXXXXXXDQISFDKEYIRI 228
+SRCT DQ+ +KE +RI
Sbjct: 197 LSPALLSRCTRFRFSPLKEQDIRVLI-DQV-IEKEDVRI 233
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 79/146 (54%), Positives = 97/146 (66%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L
Sbjct: 14 NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSM
Sbjct: 74 GTN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICN 193
T AQ ALRRT+E YS TRF CN
Sbjct: 126 TSGAQQALRRTIEIYSNSTRFALACN 151
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 74/148 (50%), Positives = 104/148 (70%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 15 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKD 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+VVR I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 75 KEFNSMVLELNASDDRGIDVVRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSK 154
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 76/153 (49%), Positives = 101/153 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + ++ PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP-CPP--YKIIILDEADS 166
+ S VLELNASDDRGINV+R +IKTFA + + Y C K+IILDEAD
Sbjct: 74 KR-SSFVLELNASDDRGINVIRDQIKTFA-------ESKNHYTTCEKTTLKLIILDEADH 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
MT AQNA+RR ME Y+K RF +CNY+++ T
Sbjct: 126 MTYPAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 76/153 (49%), Positives = 101/153 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + ++ PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP-CPP--YKIIILDEADS 166
+ S VLELNASDDRGINV+R +IKTFA + + Y C K+IILDEAD
Sbjct: 74 KR-SSFVLELNASDDRGINVIRDQIKTFA-------ESKNHYTTCEKTTLKLIILDEADH 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
MT AQNA+RR ME Y+K RF +CNY+++ T
Sbjct: 126 MTYPAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 85/169 (50%), Positives = 105/169 (62%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQ-PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
TQ+ +DE K P + + PWVEKYRP ++ ++ EE V L N P+
Sbjct: 44 TQADGPPKKDETAPK--PTTTAYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPN 101
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++ GPPGTGKTT+ L +A L GP + K VLELNAS+DRGI+VVR KIK FA
Sbjct: 102 IIIAGPPGTGKTTSILCLARALLGPAM-KDAVLELNASNDRGIDVVRNKIKMFA------ 154
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
Q++ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN
Sbjct: 155 -QQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 202
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 77/151 (50%), Positives = 104/151 (68%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMT 168
Y + VLELNASDDRGI+VVR +IK FA+ + S +G +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS---KG------FKLIILDEADAMT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQNALRR +E Y+K TRF + NY + T
Sbjct: 124 NAAQNALRRVIERYTKNTRFCVLANYAHKLT 154
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 73/148 (49%), Positives = 103/148 (69%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ +RG +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KRG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 73/155 (47%), Positives = 105/155 (67%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA+
Sbjct: 33 PPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAV 92
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+GP+ Y++ +LELNASDDRGI+VVR +I+ FA+ S + K+++LD
Sbjct: 93 ARKLYGPK-YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS------VKLVLLD 145
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EAD+MT+DAQ ALRR +E Y+K TRF I N++++
Sbjct: 146 EADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNK 180
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 75/167 (44%), Positives = 112/167 (67%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
E S + ++ A +++ PWVEKYRP+ + D+ ++++ + + PH+L YGP
Sbjct: 2 ETSAQQEQQPAAAKIRNL-PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGP 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ ++G
Sbjct: 61 PGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG- 117
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 159
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 75/167 (44%), Positives = 112/167 (67%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
E S + ++ A +++ PWVEKYRP+ + D+ ++++ + + PH+L YGP
Sbjct: 2 ETSAQQEQQPAAAKIRNL-PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGP 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ ++G
Sbjct: 61 PGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG- 117
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 159
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 72/148 (48%), Positives = 103/148 (69%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 71/148 (47%), Positives = 103/148 (69%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 72/148 (48%), Positives = 103/148 (69%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 35 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 95 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 147 DAQNALRRVIEKFTENTRFCLICNYLSK 174
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 72/148 (48%), Positives = 103/148 (69%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 79/144 (54%), Positives = 96/144 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 79/144 (54%), Positives = 96/144 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 47 PWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 106
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 107 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 158
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 159 GAQQALRRTMEIYSKTTRFALACN 182
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 78/148 (52%), Positives = 95/148 (64%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+++D+ EE V L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGD 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 70 EHYHQATMELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRQKIIILDEADSMTP 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRT+E YS TRF F CN S+
Sbjct: 123 GAQQALRRTIEIYSNTTRFAFACNQSSK 150
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 79/144 (54%), Positives = 95/144 (65%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 79/144 (54%), Positives = 95/144 (65%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 79/144 (54%), Positives = 95/144 (65%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 80/144 (55%), Positives = 96/144 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 102 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 153
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 154 GAQQALRRTMEIYSKTTRFALACN 177
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 78/144 (54%), Positives = 95/144 (65%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K +LELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 97 AL-KDAMLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 148
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 149 GAQQALRRTMEIYSKTTRFALACN 172
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 78/153 (50%), Positives = 95/153 (62%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
LDEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACN 145
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 75/157 (47%), Positives = 104/157 (66%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP +++V Q+E+V + +ET PH+LFYGP GTGKT+T +A+A +++G
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTED 170
YK+ +LELNASDDRGI+VVR +IK FA+ + + +K+IILDEAD+MT
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 171 AQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQN+LRR +E ++K RF + NY ISRCT
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCT 182
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 78/144 (54%), Positives = 92/144 (63%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L + N PH++ G PG GKTT+ L +AH L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 82 A-YKEGVLELNASDERGIDVVRNRIKAFA-------QKKVILPPGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACN 157
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 78/148 (52%), Positives = 96/148 (64%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + D+ E +V L N P+++ GPPG GKTT+ A+A +
Sbjct: 7 QQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARE 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G ++ K VLELNASD+RGI+VVR +IKTFA V + R +KIIILDEAD
Sbjct: 67 LLGDKV-KEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGR-------HKIIILDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICN 193
SMT+ AQ ALRRTME Y+K TRF CN
Sbjct: 119 SMTDGAQQALRRTMEMYTKTTRFALACN 146
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 79/158 (50%), Positives = 98/158 (62%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E K A +S PW+EKYRP + K++ E+ V L+ N P+++ GPPG GK
Sbjct: 3 EEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++ P
Sbjct: 63 TTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGR 114
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
+KI+ILDEADSMTE AQ ALRRTME YS TRF CN
Sbjct: 115 HKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACN 152
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 75/144 (52%), Positives = 91/144 (63%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L + + N P+++ GPPGTGKT++ L +A L G
Sbjct: 21 PWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGA 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK V ELNASDDR ++VVR KIK+FA ++ P +KIIILDE DSMT
Sbjct: 81 N-YKEAVYELNASDDRTLDVVRDKIKSFA-------MKKVTLPAGRHKIIILDEVDSMTS 132
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRR ME YS TRF F CN
Sbjct: 133 GAQQALRRIMEIYSGTTRFAFACN 156
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 81/214 (37%), Positives = 117/214 (54%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
ED K ++ + ++ W+EKYRP+ + +V V+ L + + + N P++L G PGT
Sbjct: 3 EDSFKNRL--LKRNIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGT 60
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
GKTT+ L +A ++ G + K+ VLELNASDDRGINV+R +IK+FA + P
Sbjct: 61 GKTTSILCLASEMLGNQAKKA-VLELNASDDRGINVIRDRIKSFAKEIIS-------LPP 112
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTXXXXXXXXXXXXXX 213
+KIIILDE DSMT AQ +LRR ME YS TRF CN +
Sbjct: 113 GKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFK 172
Query: 214 XXXDQISFDKEYIRIIYASTLKFLEGFGL-SLTY 246
DQ+ K ++I +K+ + GL +LT+
Sbjct: 173 LSDDQVL--KRILKICDLENIKYTDD-GLDALTF 203
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 81/214 (37%), Positives = 117/214 (54%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
ED K ++ + ++ W+EKYRP+ + +V V+ L + + + N P++L G PGT
Sbjct: 3 EDSFKNRL--LKRNIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGT 60
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
GKTT+ L +A ++ G + K+ VLELNASDDRGINV+R +IK+FA + P
Sbjct: 61 GKTTSILCLASEMLGNQAKKA-VLELNASDDRGINVIRDRIKSFAKEIIS-------LPP 112
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTXXXXXXXXXXXXXX 213
+KIIILDE DSMT AQ +LRR ME YS TRF CN +
Sbjct: 113 GKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFK 172
Query: 214 XXXDQISFDKEYIRIIYASTLKFLEGFGL-SLTY 246
DQ+ K ++I +K+ + GL +LT+
Sbjct: 173 LSDDQVL--KRILKICDLENIKYTDD-GLDALTF 203
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 67/118 (56%), Positives = 82/118 (69%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV 123
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 68/113 (60%), Positives = 79/113 (69%)
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
N P+++ GPPGTGKTT+ L +A L GP L K VLELNAS+DRGI+VVR KIK FA
Sbjct: 9 NVPNIIIAGPPGTGKTTSILCLARALLGPAL-KDAVLELNASNDRGIDVVRNKIKMFA-- 65
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
Q++ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN
Sbjct: 66 -----QQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 113
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 160 (61.4 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
WV+KYRPK + ++H EE+ L + + + PH+L YGP GTGK T +A+ +FGP
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
Query: 110 ELYKSRV 116
+Y+ ++
Sbjct: 64 GVYRLKI 70
Score = 122 (48.0 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 117 LELNASDDRGIN---VVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTEDAQ 172
LE+ SD G N V++ +K A + V + G YK +I++EA+S+T+DAQ
Sbjct: 94 LEITPSD-MGNNDRIVIQELLKEVAQMEQVDFQDSKDGL-AHRYKCVIINEANSLTKDAQ 151
Query: 173 NALRRTMETYSKVTRFFFICNYIS 196
ALRRTME YSK R +C+ +S
Sbjct: 152 AALRRTMEKYSKNIRLIMVCDSMS 175
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 163 (62.4 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRPK + V E++ + L + +CPH+LFYGP G+GK T +A+ Q++G
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAA 139
K +V D G + ++ T ++
Sbjct: 63 AEKVKVENRAWKVDAGSRTIDLELTTLSS 91
Score = 113 (44.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
YK+++L+E D ++ +AQ++LRRTME YS R CN S+ T
Sbjct: 131 YKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVT 174
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 137 (53.3 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP+ + + + + + L ++ + PH+L YGP G+GK T +++FGP+
Sbjct: 4 WVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGPQ 63
Query: 111 LYKSRV 116
+ K ++
Sbjct: 64 VEKLKI 69
Score = 128 (50.1 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 111 LYKSRVLELNASDDRGIN---VVRTKIKTFAAVA-VG-SGQRRGGYPCPPYKIIILDEAD 165
L S LE+ SD G N V++ +K A+ V + Q R + +KI+I++EAD
Sbjct: 87 LSSSNHLEITPSD-MGNNDRVVIQDLLKDVASTEQVDFANQSRAKHR---FKIVIINEAD 142
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
S++ DAQ ALRRTME YS R +CN IS
Sbjct: 143 SLSRDAQAALRRTMEKYSSNIRLILVCNSIS 173
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 43/82 (52%), Positives = 61/82 (74%)
Query: 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
VLELNASDDRGI+++R I +FA+ ++G +K++ILDEAD+MT+DAQNAL
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIF--KKG------FKLVILDEADAMTQDAQNAL 53
Query: 176 RRTMETYSKVTRFFFICNYISR 197
RR +E +++ TRF ICNY+S+
Sbjct: 54 RRVIEKFTENTRFCLICNYLSK 75
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 134 (52.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + + +L+G
Sbjct: 4 WVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
Score = 121 (47.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ IKT A + + S +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQR------EFKVVLLTEVDRLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISR 197
ALRRTME Y R CN S+
Sbjct: 147 ALRRTMEKYMATCRLILCCNSTSK 170
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 134 (52.2 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
Score = 118 (46.6 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ +KT A + + + +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISR 197
ALRRTME Y R CN S+
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSK 170
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 133 (51.9 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
Score = 118 (46.6 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ +KT A + + + +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISR 197
ALRRTME Y R CN S+
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSK 170
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 132 (51.5 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
Score = 119 (46.9 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 117 LELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNA 174
LE+N SD + V++ +KT V Q+ +K+++L E D +T+DAQ+A
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKT-----VAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHA 147
Query: 175 LRRTMETYSKVTRFFFICNYISR 197
LRRTME Y R CN S+
Sbjct: 148 LRRTMEKYMSTCRLILCCNSTSK 170
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 132 (51.5 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
Score = 119 (46.9 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 117 LELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNA 174
LE+N SD + V++ +KT V Q+ +K+++L E D +T+DAQ+A
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKT-----VAQSQQLETNSQKDFKVVLLTEVDKLTKDAQHA 147
Query: 175 LRRTMETYSKVTRFFFICNYISR 197
LRRTME Y R CN S+
Sbjct: 148 LRRTMEKYMSTCRLILCCNSTSK 170
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 130 (50.8 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
Score = 118 (46.6 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ +KT A + + + +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISR 197
ALRRTME Y R CN S+
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSK 170
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 130 (50.8 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
Score = 118 (46.6 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ +KT A + + + +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISR 197
ALRRTME Y R CN S+
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSK 170
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 124 (48.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + E L + ++ + PH+L YGP G GK T + + +L+G
Sbjct: 4 WVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
Score = 123 (48.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 33/84 (39%), Positives = 46/84 (54%)
Query: 117 LELNASDDRGIN---VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD G N V++ +KT V Q+ +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSD-AGNNDRVVIQELLKT-----VAQSQQLETSTQRDFKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISR 197
ALRRTME Y R CN IS+
Sbjct: 147 ALRRTMEKYMATCRLILCCNSISK 170
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 135 (52.6 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP- 109
WV+KYRP+++ + ++ L N + ++ PH++FYGP G GK T + + +++G
Sbjct: 43 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSG 102
Query: 110 -ELYKSRVLELNASDDRGINVV 130
E +S + +R + V+
Sbjct: 103 VERLRSETMTFTTPSNRKVEVM 124
Score = 109 (43.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 117 LELNASD----DRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
LE+N SD DR I++++ +T + + SGQR +K+I++ E D +T+D
Sbjct: 132 LEVNPSDAGMYDRTVVIDLIKQVAQTHQ-IEI-SGQRE-------FKVIVISEGDELTKD 182
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME Y R N SR
Sbjct: 183 AQHALRRTMEKYVATCRIIISVNSTSR 209
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 131 (51.2 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+++YRPK + + + +++ L + T PH+L YGP G GK T +AI +L+GP
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPG 62
Query: 111 LYKSRV 116
K ++
Sbjct: 63 SEKLKI 68
Score = 105 (42.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+K+++++ AD +T DAQ ALRRTME YS R I N S+
Sbjct: 128 FKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSK 169
Score = 36 (17.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 124 DRGINVVRTKIKTFAAVAVGSGQR--RGGY-PCPPYKIIILDEADSMTEDAQNA 174
DR + ++T A + G+ Q G P P ++ I DSM ++ A
Sbjct: 219 DRNLRKAILLLETVHAKSPGNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPA 272
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 130 (50.8 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
V+K+RP+ + + + EE+ L + ++ + PH+L YGP G GK T +A +L+GP +
Sbjct: 5 VDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGPGV 64
Query: 112 YK----SRVLELNASDDRGINVV 130
K +RV + +++ N+V
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIV 87
Score = 101 (40.6 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
+K+++++EAD ++ DAQ ALRRTME YS R + N
Sbjct: 129 FKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLAN 166
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 125 (49.1 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
V+K+RP+ + +++ E+ L + ++ + PH+L YGP G GK T +A +L+GP +
Sbjct: 5 VDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGPGV 64
Query: 112 YK----SRVLELNASDDRGINVV 130
K +RV + ++ N+V
Sbjct: 65 EKIKIDNRVFQTTSNRKLEFNIV 87
Score = 106 (42.4 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
+K+++++EAD +T DAQ ALRRTME YS R + N S
Sbjct: 129 FKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTS 169
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 109 (43.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+K+++L EADS+T DAQ+ LRRTME Y+ + C +SR
Sbjct: 131 FKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSR 172
Score = 109 (43.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 51 WVEKYRPKQV--KD-VAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQL 106
WV+KYRPK + KD V + E L +A+C PH+LF GP G GK T + +L
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK--FLSADCMPHLLFCGPSGAGKKTRIKCLLREL 61
Query: 107 FGPELYKSRVL 117
+G + K++++
Sbjct: 62 YGVGVEKTQLI 72
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 109 (43.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+K+++L EADS+T DAQ+ LRRTME Y+ + C +SR
Sbjct: 131 FKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSR 172
Score = 109 (43.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 51 WVEKYRPKQV--KD-VAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQL 106
WV+KYRPK + KD V + E L +A+C PH+LF GP G GK T + +L
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK--FLSADCMPHLLFCGPSGAGKKTRIKCLLREL 61
Query: 107 FGPELYKSRVL 117
+G + K++++
Sbjct: 62 YGVGVEKTQLI 72
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 120 (47.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKY P+ + ++ +++ L + PH++FYG PG GK+T + ++F E
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 111 -LYKSRVLELNASDDRGINVVRT 132
+ + NA + INVV++
Sbjct: 62 KIIRRPECITNAENKININVVQS 84
Score = 85 (35.0 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
P Y+I + +A+ ++E AQ LRRT+ETY + R ++S+
Sbjct: 124 PMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSK 167
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 120 (47.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKY P+ + ++ +++ L + PH++FYG PG GK+T + ++F E
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 111 -LYKSRVLELNASDDRGINVVRT 132
+ + NA + INVV++
Sbjct: 62 KIIRRPECITNAENKININVVQS 84
Score = 85 (35.0 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
P Y+I + +A+ ++E AQ LRRT+ETY + R ++S+
Sbjct: 124 PMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSK 167
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 153 (58.9 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 48/146 (32%), Positives = 75/146 (51%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIA------HQL 106
K+RPK ++ QE +V++L N + T H LF GP GTGKTTTA +A H +
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCEHPV 67
Query: 107 FG------PELY----KS--RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
G P +S V E++A+ +RGI+ +R +++ + G+
Sbjct: 68 EGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIR-ELRESIKLVPAQGK-------- 118
Query: 155 PYKIIILDEADSMTEDAQNALRRTME 180
YK+ I+DE +T +A NAL +T+E
Sbjct: 119 -YKVYIIDEVHMLTNEAFNALLKTLE 143
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 148 (57.2 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/142 (32%), Positives = 72/142 (50%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY 112
KYRP+ ++V QE V +L N L+ H LF G GTGKTTTA ++F ++
Sbjct: 6 KYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTTA-----RIFAKDVN 60
Query: 113 KS--RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
K +E++A+ + G+ VR I+ ++ S +K+ I+DE ++
Sbjct: 61 KGLGSPIEIDAASNNGVENVRNIIEDSRYKSMDS----------EFKVYIIDEVHMLSTG 110
Query: 171 AQNALRRTMETYSKVTRFFFIC 192
A NAL +T+E S T F +C
Sbjct: 111 AFNALLKTLEEPSSGT-VFILC 131
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 144 (55.7 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W++KY+P + + + ++ L N +++ + PH+L YGP G GK T LA+ +++GP
Sbjct: 3 WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPN 62
Query: 111 LYKSRVLELNASDDRGI-NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K ++ N+ T I + + + G+ G Y + II + A S
Sbjct: 63 ALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPGEA-GSYDRVVIQTIIKEIAQSPPI 121
Query: 170 DA 171
D+
Sbjct: 122 DS 123
>TIGR_CMR|BA_4703 [details] [associations]
symbol:BA_4703 "ATP-dependent protease LonB" species:198094
"Bacillus anthracis str. Ames" [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0030436 "asexual sporulation" evidence=ISS] InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008268
InterPro:IPR008269 InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362
PROSITE:PS01046 PROSITE:PS50045 SMART:SM00382 GO:GO:0005524
GO:GO:0006355 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 PANTHER:PTHR10046 HSSP:P08177
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
InterPro:IPR014251 TIGRFAMs:TIGR02902 RefSeq:NP_846916.1
RefSeq:YP_021351.1 RefSeq:YP_030615.1 ProteinModelPortal:Q81LC0
IntAct:Q81LC0 DNASU:1083686 EnsemblBacteria:EBBACT00000010075
EnsemblBacteria:EBBACT00000014143 EnsemblBacteria:EBBACT00000022575
GeneID:1083686 GeneID:2816064 GeneID:2851723 KEGG:ban:BA_4703
KEGG:bar:GBAA_4703 KEGG:bat:BAS4368
BioCyc:BANT260799:GJAJ-4423-MONOMER
BioCyc:BANT261594:GJ7F-4571-MONOMER Uniprot:Q81LC0
Length = 557
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
TQK S + S K E E RKM + ++P EK RP D+ QE+ ++ L L
Sbjct: 32 TQKVSIDRES--KKELEQLRKMREI-SLTEPLAEKVRPTSFLDIVGQEDGIKSLKAALCG 88
Query: 80 ANCPHMLFYGPPGTGKTTTA-LAIAHQLFGPEL-YKSRV--LELNAS----DDRGI 127
N H++ YGPPG GKT A L + P+ +++ +EL+A+ D+RGI
Sbjct: 89 PNPQHVIIYGPPGVGKTAAARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGI 144
>TAIR|locus:2032432 [details] [associations]
symbol:AT1G24290 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR009060 Pfam:PF00004 Pfam:PF00627 SMART:SM00382
EMBL:CP002684 GO:GO:0005524 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0017111 SUPFAM:SSF46934 EMBL:AC002396
UniGene:At.41453 UniGene:At.63976 HOGENOM:HOG000017623 KO:K07478
InterPro:IPR021886 Pfam:PF12002 IPI:IPI00523189 PIR:T00660
RefSeq:NP_173839.1 HSSP:Q56313 ProteinModelPortal:O48696 SMR:O48696
STRING:O48696 PRIDE:O48696 EnsemblPlants:AT1G24290.1 GeneID:839045
KEGG:ath:AT1G24290 TAIR:At1g24290 InParanoid:O48696 OMA:FEVIAPL
PhylomeDB:O48696 ProtClustDB:CLSN2682390 Genevestigator:O48696
Uniprot:O48696
Length = 525
Score = 130 (50.8 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 36/121 (29%), Positives = 68/121 (56%)
Query: 33 SEDEVKR-KMAPVL-QSSQPWVEKYRPKQVKDVAHQEEVVR---VLTNTLETANCPHMLF 87
++D KR K++ + QP E+ RP+ + DV Q+ ++ +L + +E+ P ++F
Sbjct: 83 ADDSNKRHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVF 142
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
+GPPGTGKT+ A ++ + P LY R + L+A G+ VR +++ + + G++
Sbjct: 143 WGPPGTGKTSIAKSLINSSKDPSLY--RFVSLSAVTS-GVKDVRDAVESAKRLNL-EGRK 198
Query: 148 R 148
R
Sbjct: 199 R 199
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 105 (42.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 31/108 (28%), Positives = 57/108 (52%)
Query: 1 MRANFGKIHKSGKNKSPNFTQKFSTTQSSPE-KSEDEVKRKMAPVLQSSQPWVEKYRPKQ 59
+ +FG+I +++ +++S+ S + + E+E + P +S Q +KY+P
Sbjct: 377 LSTDFGEIDLEAQSRLDG--RRWSSCCKSQDGEREEEEEGGSTP--ESIQSLSQKYKPMF 432
Query: 60 VKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL 106
++ Q VV+ L N ++ H+ LF GP GTGKT+TA ++ L
Sbjct: 433 FDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAAL 480
Score = 74 (31.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 111 LYKSR-VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L KSR +LEL+A G VR +K +A S QR YK+ ++DE +
Sbjct: 503 LGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQR--------YKVFVIDECHLLPS 554
Query: 170 DAQNALRRTMETYSKVTRFFFIC 192
+L + +E + + +F F+C
Sbjct: 555 RTWLSLLKFLE--NPLQKFVFVC 575
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 111 (44.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL 106
KYRP++ +D+ QE +VR L+N ET H + G G GKTTTA +A L
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGL 88
Score = 59 (25.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YK+ I+DE ++ + NAL +T+E +F F I +
Sbjct: 158 YKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRK 199
>TIGR_CMR|CPS_2757 [details] [associations]
symbol:CPS_2757 "ATPase, AAA family" species:167879
"Colwellia psychrerythraea 34H" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006310 GO:GO:0009378 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 RefSeq:YP_269469.1 ProteinModelPortal:Q480Q0
SMR:Q480Q0 STRING:Q480Q0 GeneID:3522496 KEGG:cps:CPS_2757
PATRIC:21468551 BioCyc:CPSY167879:GI48-2818-MONOMER Uniprot:Q480Q0
Length = 511
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 45/170 (26%), Positives = 72/170 (42%)
Query: 9 HKSGKNKSPNFTQKFSTTQSSPE-KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQE 67
H G ++ F T + E S D + S P K RPK + D Q+
Sbjct: 17 HNQGNSEGQQ-DSLFDLTPDNDEVTSTDNTSTQGNAAASSFMPLAAKMRPKTLADYVGQQ 75
Query: 68 EVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
++ L ++E +C ++F+GPPG+GKTT A IA Q E+ RV + +
Sbjct: 76 HILGGDSPLAQSIEQGHCHSLIFWGPPGSGKTTLAEIIA-QHANAEI--ERVSAVTS--- 129
Query: 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNA 174
GI +R+ I+ A G G + ++ +DE + Q+A
Sbjct: 130 -GIKEIRSAIEKAKLRAQGEGANKRR------TVLFVDEVHRFNKSQQDA 172
>UNIPROTKB|Q8WVB6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CH471112 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 EMBL:AK024476 EMBL:AL031033 EMBL:BC006278
EMBL:BC006437 EMBL:BC018184 IPI:IPI00414657 IPI:IPI00872454
IPI:IPI00895945 RefSeq:NP_071375.1 UniGene:Hs.153850
ProteinModelPortal:Q8WVB6 SMR:Q8WVB6 IntAct:Q8WVB6 STRING:Q8WVB6
DMDM:74751544 PaxDb:Q8WVB6 PRIDE:Q8WVB6 Ensembl:ENST00000262315
Ensembl:ENST00000455171 GeneID:63922 KEGG:hsa:63922 UCSC:uc002cke.4
UCSC:uc002ckf.4 CTD:63922 GeneCards:GC16P000838 HGNC:HGNC:18435
MIM:613201 neXtProt:NX_Q8WVB6 PharmGKB:PA134908713
HOVERGEN:HBG062099 KO:K11269 GenomeRNAi:63922 NextBio:65649
ArrayExpress:Q8WVB6 Bgee:Q8WVB6 CleanEx:HS_CHTF18
Genevestigator:Q8WVB6 Uniprot:Q8WVB6
Length = 975
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P ++ ++ E P + K +H++ + +L L+ + P L GPPG GK
Sbjct: 323 RKPRPSVEPARVSKEATAPGKWK--SHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGK 380
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A IA G Y V+E+NASDDR V RT+I+ AA + S GG P
Sbjct: 381 TTLAHVIARHA-G---YS--VVEMNASDDRSPEVFRTRIE--AATQMESVLGAGGKP--- 429
Query: 156 YKIIILDEADSMTEDAQNAL 175
+++DE D A N L
Sbjct: 430 -NCLVIDEIDGAPVAAINVL 448
>UNIPROTKB|E7EXA6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00178203
ProteinModelPortal:E7EXA6 SMR:E7EXA6 PRIDE:E7EXA6
Ensembl:ENST00000317063 OMA:TMLAYNL PhylomeDB:E7EXA6
ArrayExpress:E7EXA6 Bgee:E7EXA6 Uniprot:E7EXA6
Length = 1184
Score = 128 (50.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P ++ ++ E P + K +H++ + +L L+ + P L GPPG GK
Sbjct: 518 RKPRPSVEPARVSKEATAPGKWK--SHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGK 575
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A IA G Y V+E+NASDDR V RT+I+ AA + S GG P
Sbjct: 576 TTLAHVIARHA-G---YS--VVEMNASDDRSPEVFRTRIE--AATQMESVLGAGGKP--- 624
Query: 156 YKIIILDEADSMTEDAQNAL 175
+++DE D A N L
Sbjct: 625 -NCLVIDEIDGAPVAAINVL 643
>UNIPROTKB|F8WCC1 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00927525
ProteinModelPortal:F8WCC1 SMR:F8WCC1 Ensembl:ENST00000440239
ArrayExpress:F8WCC1 Bgee:F8WCC1 Uniprot:F8WCC1
Length = 456
Score = 123 (48.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 45/130 (34%), Positives = 65/130 (50%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P ++ ++ E P + K +H++ + +L L+ + P L GPPG GK
Sbjct: 324 RKPRPSVEPARVSKEATAPGKWK--SHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGK 381
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A IA G Y V+E+NASDDR V RT+I+ AA + S GG P
Sbjct: 382 TTLAHVIARHA-G---YS--VVEMNASDDRSPEVFRTRIE--AATQMESVLGAGGKP--- 430
Query: 156 YKIIILDEAD 165
+++DE D
Sbjct: 431 -NCLVIDEID 439
>RGD|1310473 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity factor 18
homolog (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR010372 Pfam:PF00004 Pfam:PF06144 SMART:SM00382
RGD:1310473 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 EMBL:CH473948 GO:GO:0003887 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OrthoDB:EOG44QT0B
GO:GO:0009360 OMA:TMLAYNL IPI:IPI00369267 RefSeq:NP_001099243.1
UniGene:Rn.53402 Ensembl:ENSRNOT00000026139 GeneID:287146
KEGG:rno:287146 UCSC:RGD:1310473 NextBio:625609 Uniprot:D4AC99
Length = 968
Score = 125 (49.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 47/140 (33%), Positives = 67/140 (47%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P ++ ++ V K P K +H++ + +L L+ + P L GPPG GK
Sbjct: 316 RKPRPGVEPTR--VGKEAPAPGKWKSHEQVLEEMLEAELDPSRRPRQKVALLCGPPGLGK 373
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A +A G Y V+E+NASDDR RT+I+ AA + S GG P
Sbjct: 374 TTLAHVVARHA-G---YC--VVEMNASDDRSPEAFRTRIE--AATQMESVLGAGGRP--- 422
Query: 156 YKIIILDEADSMTEDAQNAL 175
+++DE D A N L
Sbjct: 423 -NCLVIDEIDGAPTAAINVL 441
>ASPGD|ASPL0000029025 [details] [associations]
symbol:AN5617 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AACD01000098 EMBL:BN001305 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF
InterPro:IPR021886 Pfam:PF12002 OrthoDB:EOG4Z924S
RefSeq:XP_663221.1 ProteinModelPortal:Q5B1G3 STRING:Q5B1G3
EnsemblFungi:CADANIAT00003453 GeneID:2871909 KEGG:ani:AN5617.2
Uniprot:Q5B1G3
Length = 528
Score = 122 (48.0 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 34/94 (36%), Positives = 48/94 (51%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV--VRVLTNTLETANCPHMLFY 88
E SE K+ Q + P E+ RP+ + +V QE V VL +E P M+ +
Sbjct: 97 EASEPVPKKPKVNAFQRAAPLAERMRPRTLDEVCGQELVGPTGVLRGLIEEDRVPSMILW 156
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122
G PGTGKTT A IA + G SR +E+N++
Sbjct: 157 GGPGTGKTTIARVIA-SMVG-----SRFVEINST 184
>MGI|MGI:2384887 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity
factor 18" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
MGI:MGI:2384887 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 CTD:63922 HOVERGEN:HBG062099 KO:K11269 EMBL:AK077947
EMBL:BC024142 IPI:IPI00153429 RefSeq:NP_663384.2 UniGene:Mm.102540
ProteinModelPortal:Q8BIW9 SMR:Q8BIW9 STRING:Q8BIW9
PhosphoSite:Q8BIW9 PaxDb:Q8BIW9 PRIDE:Q8BIW9
Ensembl:ENSMUST00000048054 GeneID:214901 KEGG:mmu:214901
UCSC:uc008bbk.2 GeneTree:ENSGT00550000075029 HOGENOM:HOG000067805
InParanoid:Q8BIW9 OrthoDB:EOG44QT0B NextBio:374509 Bgee:Q8BIW9
Genevestigator:Q8BIW9 Uniprot:Q8BIW9
Length = 969
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 46/140 (32%), Positives = 68/140 (48%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P +++++ E P + K +H++ + +L L+ + P L GPPG GK
Sbjct: 318 RKPRPGVETTRVGKEATAPGKWK--SHEQALEEMLEAELDPSQRPRQKVALLCGPPGLGK 375
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A +A G Y V+E+NASDDR RT+I+ AA + S GG P
Sbjct: 376 TTLAHVVARHA-G---YC--VVEMNASDDRSPEAFRTRIE--AATQMESVLGVGGRP--- 424
Query: 156 YKIIILDEADSMTEDAQNAL 175
+++DE D A N L
Sbjct: 425 -NCLVIDEIDGAPTAAINVL 443
>TIGR_CMR|CBU_1570 [details] [associations]
symbol:CBU_1570 "Holliday junction DNA helicase RuvB"
species:227377 "Coxiella burnetii RSA 493" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] [GO:0009379 "Holliday junction
helicase complex" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006310 GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255
HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 RefSeq:NP_820553.1
ProteinModelPortal:Q83BE0 SMR:Q83BE0 GeneID:1209480
KEGG:cbu:CBU_1570 PATRIC:17931903
BioCyc:CBUR227377:GJ7S-1549-MONOMER Uniprot:Q83BE0
Length = 351
Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
Identities = 35/94 (37%), Positives = 52/94 (55%)
Query: 39 RKMAPVLQSSQPWVEK-YRPKQVKD------VAHQEEV-VRVLTNTLETANCPHMLFYGP 90
R + +QS++P +E+ RPK++ D V Q ++ +R TN E + H+L +GP
Sbjct: 8 RLIGATVQSNEPDLERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALD--HVLIFGP 65
Query: 91 PGTGKTTTALAIAHQL-FGPELYKSRVLELNASD 123
PG GKTT A IAH++ G + VLE A D
Sbjct: 66 PGLGKTTLAHIIAHEMQAGLKQTSGPVLE-KAGD 98
>POMBASE|SPBC902.02c [details] [associations]
symbol:ctf18 "RFC-like complex subunit Ctf18"
species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=IC] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0051455 "attachment of
spindle microtubules to kinetochore involved in homologous
chromosome segregation" evidence=IMP] [GO:0003689 "DNA clamp loader
activity" evidence=TAS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 PomBase:SPBC902.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0017111
eggNOG:COG0470 GO:GO:0005657 GO:GO:0051455 KO:K11269 EMBL:AB027926
PIR:T50383 RefSeq:NP_595200.1 ProteinModelPortal:Q9USQ1
STRING:Q9USQ1 EnsemblFungi:SPBC902.02c.1 GeneID:2541270
KEGG:spo:SPBC902.02c OrthoDB:EOG4HDX3F NextBio:20802382
GO:GO:0031390 GO:GO:0007062 Uniprot:Q9USQ1
Length = 960
Score = 107 (42.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 37/104 (35%), Positives = 49/104 (47%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
M+ G G GKTT A IAHQ G YK VLE+NASDDR + V K+ + A+ +
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQA-G---YK--VLEINASDDRTAHTVHEKVSS----AISN 468
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188
P +I+DE D AL +E+ K T +
Sbjct: 469 HSALSSQPT----CVIVDEIDGGDPAFVRALLSLLESDEKATEY 508
Score = 57 (25.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVR 71
QS + WV+ YRP+ +D+ E V R
Sbjct: 348 QSQKLWVDTYRPQLFRDLLGDERVHR 373
>UNIPROTKB|F1RG33 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR010372
Pfam:PF00004 Pfam:PF06144 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887
GeneTree:ENSGT00550000075029 GO:GO:0009360 EMBL:FP016225
Ensembl:ENSSSCT00000008778 Uniprot:F1RG33
Length = 978
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 47/150 (31%), Positives = 69/150 (46%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGP 90
+D RK P ++ + E + K +H++ + +L L+ + P L GP
Sbjct: 319 QDRPTRKPRPSVEPACGGKEATASSKWK--SHEQVLEEMLEAELDPSGRPRQKVALLCGP 376
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PG GKTT A IA G Y V+E+NASDDR RT+I+ AA + S GG
Sbjct: 377 PGLGKTTLAHVIARHA-G---YC--VVEMNASDDRSPEAFRTRIE--AATQMESVLGSGG 428
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTME 180
P +++DE D A N L ++
Sbjct: 429 RP----NCLVIDEIDGAPTAAINVLLSVLD 454
>UNIPROTKB|I3LC39 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:FP016225
Ensembl:ENSSSCT00000031631 Uniprot:I3LC39
Length = 1007
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 47/150 (31%), Positives = 69/150 (46%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGP 90
+D RK P ++ + E + K +H++ + +L L+ + P L GP
Sbjct: 351 QDRPTRKPRPSVEPACGGKEATASSKWK--SHEQVLEEMLEAELDPSGRPRQKVALLCGP 408
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PG GKTT A IA G Y V+E+NASDDR RT+I+ AA + S GG
Sbjct: 409 PGLGKTTLAHVIARHA-G---YC--VVEMNASDDRSPEAFRTRIE--AATQMESVLGSGG 460
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTME 180
P +++DE D A N L ++
Sbjct: 461 RP----NCLVIDEIDGAPTAAINVLLSVLD 486
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 40/142 (28%), Positives = 67/142 (47%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF 107
Q + K+RP+ + D+ QE V L N L + LF GP GTGKT+T +A +
Sbjct: 4 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVN 63
Query: 108 -----GP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGY-PC-PPYKI 158
G E + + L+ ++ ++V+ + V + + + Y P YK+
Sbjct: 64 CTTNQGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALANYKV 123
Query: 159 IILDEADSMTEDAQNALRRTME 180
I+DE ++ A NAL +T+E
Sbjct: 124 YIIDEVHMLSNSASNALLKTLE 145
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 44/148 (29%), Positives = 64/148 (43%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL-----F 107
K+RP+ D+ QE V R L N +++ H LF G G GKT++A +A L
Sbjct: 9 KWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCEQGM 68
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPP----YKIIILD 162
PE V G +V +I + V + R P YKI I+D
Sbjct: 69 SPE--PCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIID 126
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFF 190
E ++ +A NAL +T+E +F F
Sbjct: 127 EVHMLSTNAFNALLKTLEEPPPHVKFIF 154
>UNIPROTKB|F1PVV3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR021886 Pfam:PF12002
OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AAEX03017467
Ensembl:ENSCAFT00000014690 Uniprot:F1PVV3
Length = 468
Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 42 APVLQ--SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKT 96
APV Q +P K RP ++D Q V +L + LET P ++ +GPPG GKT
Sbjct: 19 APVRQMLEGKPLATKMRPDTLQDYIGQSRAVGQDTLLRSLLETTEIPSLILWGPPGCGKT 78
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135
T A IA+ + + R + L+A++ + N VR IK
Sbjct: 79 TLAHIIANN---SKKHSIRFVTLSATNAK-TNDVRDVIK 113
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
Identities = 46/153 (30%), Positives = 68/153 (44%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELY 112
+YRP++ + V Q+ VV L +LE P LF GP G GKT+ A +A L +
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKALNCVQRE 68
Query: 113 KSRVL-ELNASDD--RGINVVRTKIKTFAAVAVGS-GQRRGGYPCPP----YKIIILDEA 164
S E + + G N+ +I + VG Q + PP YK+ I+DE
Sbjct: 69 ASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRYKVFIIDEV 128
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
++ A NAL +T+E F F + R
Sbjct: 129 HMLSNSAFNALLKTIEEPPPYVVFIFATTEVHR 161
>POMBASE|SPAC26H5.02c [details] [associations]
symbol:SPAC26H5.02c "DNA replication ATPase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000731
"DNA synthesis involved in DNA repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR006642 Pfam:PF00004 SMART:SM00382
SMART:SM00734 PomBase:SPAC26H5.02c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0000731
GO:GO:0043142 GO:GO:0033567 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF InterPro:IPR021886 Pfam:PF12002 HSSP:P38251
PIR:T38421 RefSeq:NP_594449.2 ProteinModelPortal:O13984
STRING:O13984 EnsemblFungi:SPAC26H5.02c.1 GeneID:2542096
KEGG:spo:SPAC26H5.02c OrthoDB:EOG4Z924S NextBio:20803168
Uniprot:O13984
Length = 504
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 38/119 (31%), Positives = 56/119 (47%)
Query: 7 KIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ 66
K H S KF + SP K K K+ + ++P E+ RPK + + Q
Sbjct: 49 KHHLETNVSSHQSATKFIEPEPSPTK-----KTKLTR--RDTRPLAERARPKSLDEYVGQ 101
Query: 67 EEVVR---VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122
EE+V ++ N +E C M+ +G GTGKTT A IA KSR +E++A+
Sbjct: 102 EELVGERGIIRNLIEQDRCNSMILWGSAGTGKTTLARLIAVTT------KSRFIEISAT 154
>TIGR_CMR|CHY_0329 [details] [associations]
symbol:CHY_0329 "ATP-dependent protease LonB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004252 "serine-type endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0030436 "asexual sporulation"
evidence=ISS] InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008268 InterPro:IPR008269
InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362 PROSITE:PS01046
PROSITE:PS50045 SMART:SM00382 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006508
GO:GO:0006351 GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 eggNOG:COG1067 PANTHER:PTHR10046
RefSeq:YP_359192.1 ProteinModelPortal:Q3AF92 STRING:Q3AF92
GeneID:3728068 KEGG:chy:CHY_0329 PATRIC:21273827
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
BioCyc:CHYD246194:GJCN-330-MONOMER InterPro:IPR014251
TIGRFAMs:TIGR02902 Uniprot:Q3AF92
Length = 547
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 32 KSEDEV-KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+SE E+ K + ++P EK RP+ ++ QEE + L L N H++ YGP
Sbjct: 40 ESEKELAKLNHLRRISLTEPLAEKTRPENFSEIIGQEEGIEALKAALCGPNPQHVILYGP 99
Query: 91 PGTGKTTTA-LAIAHQLFGPEL-YK--SRVLELNAS----DDRGI 127
PG GKT A L + + P +K + +E++A+ D+RGI
Sbjct: 100 PGVGKTAAARLVLKEAIKSPASPFKEGAAFVEVDATCTRFDERGI 144
>UNIPROTKB|E1B8Q4 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL
EMBL:DAAA02057284 IPI:IPI00717859 RefSeq:NP_001179389.1
UniGene:Bt.60318 Ensembl:ENSBTAT00000026311 GeneID:517007
KEGG:bta:517007 NextBio:20872353 Uniprot:E1B8Q4
Length = 978
Score = 118 (46.6 bits), Expect = 0.00040, P = 0.00040
Identities = 41/120 (34%), Positives = 58/120 (48%)
Query: 64 AHQEEVVRVLTNTLETANCPHM---LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120
+H++ + +L L+ + P L GPPG GKTT A IA G Y V+E+N
Sbjct: 347 SHEQVLEEMLEAELDPSGRPRQKVALLCGPPGLGKTTLAHVIARHA-G---YC--VVEMN 400
Query: 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180
ASDDR RT+I+ AA + S GG P +++DE D A N L ++
Sbjct: 401 ASDDRSPEAFRTRIE--AATQMESVLGAGGRP----NCLVIDEIDGAPTAAINVLLSVLD 454
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 45/148 (30%), Positives = 62/148 (41%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF---GP 109
KYRP +V QE V L+ L+ H LF GP G GKT++A +A L GP
Sbjct: 6 KYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGP 65
Query: 110 ELYKSRVLE----LNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP---YKIIILD 162
V E L + I+VV + V R + P Y++ I+D
Sbjct: 66 TANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVFIVD 125
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFF 190
EA +T NAL + +E + F F
Sbjct: 126 EAHMVTTAGFNALLKIVEEPPEHLIFIF 153
>TIGR_CMR|SO_2308 [details] [associations]
symbol:SO_2308 "ATPase, AAA family" species:211586
"Shewanella oneidensis MR-1" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 RefSeq:NP_717903.2
ProteinModelPortal:Q8EER1 GeneID:1170033 KEGG:son:SO_2308
PATRIC:23524239 Uniprot:Q8EER1
Length = 443
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 31/102 (30%), Positives = 49/102 (48%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+P + RP+ + + Q ++ + L LE M+ +GPPGTGKTT A IAH
Sbjct: 13 RPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAH- 71
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
Y + +E ++ G+ +R I+ A+A GQR
Sbjct: 72 ------YSNAHVERISAVTSGVKDIRGAIEQAQAIAQSRGQR 107
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 114 (45.2 bits), Expect = 0.00057, P = 0.00057
Identities = 48/156 (30%), Positives = 70/156 (44%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q +RP++ +DV Q+ V + L N L H LF GP GTGKTT A A
Sbjct: 2 SYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKA 61
Query: 106 L---FGPELYK---------------SRVLELNASDDRGINVVRT---KIKTFAAVAVGS 144
+ P S VLE++A+ + G++ +R K+K +A AV
Sbjct: 62 INCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVK-YAPSAV-- 118
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180
YK+ I+DE ++ A NAL +T+E
Sbjct: 119 ----------EYKVYIIDEVHMLSMGAFNALLKTLE 144
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 85 (35.0 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 8 IHKSGKNKSPNFTQKF-STTQSSPEKSEDEVK-------RKMAP------VLQSSQPWVE 53
+ KS +S T+K + ++SP+K E K +K+ P ++++S PW E
Sbjct: 285 VKKSLPERSNKGTEKICAPPKTSPQKEETRGKPLAKSSPKKVPPAKGKNKIIETSLPWTE 344
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
KYRPK ++ + +V L N L H F G GK
Sbjct: 345 KYRPKVPNEIVGNQSLVTQLHNWLSHW---HDQFGGTGSKGK 383
Score = 76 (31.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---INVVR-------TKI 134
+L G PG GKTT+A ++ Q+ G + +E+NASD RG N+ + +
Sbjct: 396 VLLSGTPGIGKTTSAKLVS-QMLG-----FQAVEVNASDSRGKANSNIAKGIGGSNANSV 449
Query: 135 KTFAA-VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
K A+ + R +P ++I+DE D M+ + + + + K+++ IC
Sbjct: 450 KELVNNEAMAANFDRSKHP---KTVLIMDEVDGMSAGDRGGVADLIASI-KISKIPIIC 504
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 248 231 0.00084 113 3 11 22 0.41 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 109
No. of states in DFA: 599 (64 KB)
Total size of DFA: 170 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.52u 0.09s 22.61t Elapsed: 00:00:01
Total cpu time: 22.53u 0.09s 22.62t Elapsed: 00:00:01
Start: Sat May 11 01:41:03 2013 End: Sat May 11 01:41:04 2013
WARNINGS ISSUED: 1