BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025762
(248 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/179 (88%), Positives = 163/179 (91%), Gaps = 1/179 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET+NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
LDEADSMTEDAQNALRRTMETYSKVTRFFF+CNYISR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISR-IIEPLASRCAKFRFKPLSEEI 178
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 158/179 (88%), Positives = 162/179 (90%), Gaps = 1/179 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEI 178
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 157/179 (87%), Positives = 161/179 (89%), Gaps = 1/179 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEI 178
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 326 bits (835), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 163/208 (78%), Positives = 173/208 (83%), Gaps = 3/208 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAV SGQR+GGYPCPP+KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISR L S F F L +++
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEV- 178
Query: 221 FDKEYIRIIYASTLKFLEGFGLSLTYSI 248
K + I L L+G LS SI
Sbjct: 179 MSKRILHIGNEEGLS-LDGEALSTLSSI 205
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 163/208 (78%), Positives = 173/208 (83%), Gaps = 3/208 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAV SGQR+GGYPCPP+KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISR L S F F L +++
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEV- 178
Query: 221 FDKEYIRIIYASTLKFLEGFGLSLTYSI 248
K + I L L+G LS SI
Sbjct: 179 MSKRILHIGNEEGLS-LDGEALSTLSSI 205
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 323 bits (828), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 155/179 (86%), Positives = 162/179 (90%), Gaps = 1/179 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQ WVEKYRPKQ+KDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR+G YPCPPYKIII
Sbjct: 61 AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLPEEI 178
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 152/157 (96%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 157
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 152/157 (96%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 157
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/208 (77%), Positives = 172/208 (82%), Gaps = 3/208 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L +++
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVM 179
Query: 221 FDKEYIRIIYASTLKFLEGFGLSLTYSI 248
++ + I L L+G LS SI
Sbjct: 180 SNR-ILHICNEEGLS-LDGEALSTLSSI 205
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/192 (80%), Positives = 166/192 (86%), Gaps = 5/192 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQS+QPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSTQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ QR+ GYPCPP+KII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSR-IIEPLASRCAKFRFKPLSEEIM 179
Query: 221 FDKEYIRIIYAS 232
RI+Y S
Sbjct: 180 SS----RILYIS 187
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 152/157 (96%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 157
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 158/210 (75%), Positives = 173/210 (82%), Gaps = 7/210 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QS+QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ + + GYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLTEEIM 179
Query: 221 FDKEYIRIIYASTLK--FLEGFGLSLTYSI 248
RI+Y + +L+ GLS +I
Sbjct: 180 SS----RIVYICKEEGIYLDAEGLSTLSNI 205
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/210 (75%), Positives = 173/210 (82%), Gaps = 7/210 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QSSQPWVEKYRPKQVKDVA+Q+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIVQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ ++GGYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEIM 179
Query: 221 FDKEYIRIIYASTLK--FLEGFGLSLTYSI 248
RI+Y + L+ GLS SI
Sbjct: 180 SS----RILYICNEEGLHLDAEGLSTLSSI 205
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 154/192 (80%), Positives = 165/192 (85%), Gaps = 5/192 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSR-IIEPLASRCAKFRFKPLSEEIM 179
Query: 221 FDKEYIRIIYAS 232
RI+Y S
Sbjct: 180 SS----RILYIS 187
>gi|388513801|gb|AFK44962.1| unknown [Lotus japonicus]
Length = 231
Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/209 (75%), Positives = 173/209 (82%), Gaps = 6/209 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QSSQPWVEKYRPKQV+DVA+Q+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIVQSSQPWVEKYRPKQVEDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ ++GGYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L ++I
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEIM 179
Query: 221 FDKEYIRIIYASTLK-FLEGFGLSLTYSI 248
RI+Y + L+ GLS SI
Sbjct: 180 SS----RILYICNEEGILDAEGLSTLSSI 204
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/179 (84%), Positives = 155/179 (86%), Gaps = 8/179 (4%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L ++I
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEI 171
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 143/157 (91%), Positives = 151/157 (96%), Gaps = 1/157 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SSQPWVEKYRP+QVKDVAHQEEVVRVLT TL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+GGYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSA-RKGGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 156
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/157 (90%), Positives = 152/157 (96%), Gaps = 1/157 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SSQPWVEKYRP+QVKDVAHQEEVVRVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLIPSSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASD+RGINVVRTKIK FAAVAVG+ R+GGYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDERGINVVRTKIKDFAAVAVGTA-RKGGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 156
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 140/157 (89%), Positives = 150/157 (95%), Gaps = 1/157 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 156
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/179 (81%), Positives = 158/179 (88%), Gaps = 2/179 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L +++
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLVSRCAKFRFKPLSEEV 177
>gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis
vinifera]
Length = 329
Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 147/179 (82%), Positives = 151/179 (84%), Gaps = 13/179 (7%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR L S F F L ++I
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEI 166
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 141/157 (89%), Positives = 145/157 (92%), Gaps = 7/157 (4%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 150
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/157 (87%), Positives = 148/157 (94%), Gaps = 1/157 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVL NTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRT ETYSKVTRFFFICNYISR
Sbjct: 120 LDEADSMTEDAQNALRRTTETYSKVTRFFFICNYISR 156
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/157 (87%), Positives = 148/157 (94%), Gaps = 1/157 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVL NTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRT ETYSKVTRFFFICNYISR
Sbjct: 120 LDEADSMTEDAQNALRRTTETYSKVTRFFFICNYISR 156
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/192 (76%), Positives = 158/192 (82%), Gaps = 12/192 (6%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SR L S F F L ++I
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSR-IIEPLASRCAKFRFKPLSEEIM 172
Query: 221 FDKEYIRIIYAS 232
RI+Y S
Sbjct: 173 SS----RILYIS 180
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/179 (81%), Positives = 151/179 (84%), Gaps = 2/179 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+ SSQ WVEKYRPKQVKDVAHQEEVVR LTNTLET N PH+LFYGPPGTGKTTTAL
Sbjct: 1 MAPIHSSSQQWVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPE YKSRVLELNASDDRGINVVRTKIK FAAVAVGSG GY CPP+KIII
Sbjct: 61 AIAHQLFGPE-YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
LDEADSMTEDAQNALRRTMETYSKVTRF FICNY+SR L S F F L++ I
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSR-IIEPLASRCAKFRFKPLVEDI 177
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 144/192 (75%), Positives = 155/192 (80%), Gaps = 17/192 (8%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQS+QPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSTQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ QR+ GYPCPP+KII+
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIV 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SR L S F F L ++I
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSR-IIEPLASRCAKFRFKPLSEEIM 167
Query: 221 FDKEYIRIIYAS 232
RI+Y S
Sbjct: 168 SS----RILYIS 175
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 157/187 (83%), Gaps = 4/187 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPV+QS+Q WVEKYRP++VKDVAHQEEVVR LTNTLET N PH+LFYGPPGTGKTTTAL
Sbjct: 1 MAPVMQSTQQWVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AI HQLFGPELYK+RVLELNASDDRGINVVRTKIK FA VAVG+G GYPCPP+K++I
Sbjct: 61 AICHQLFGPELYKTRVLELNASDDRGINVVRTKIKDFAGVAVGAGV--SGYPCPPFKVLI 118
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTME YSKVTRF FICNY+SR L S F F LL+ +
Sbjct: 119 LDEADSMTEDAQNALRRTMENYSKVTRFCFICNYVSR-IIEPLASRCAKFRFKPLLENVM 177
Query: 221 FDK-EYI 226
++ +YI
Sbjct: 178 QNRIQYI 184
>gi|30687479|ref|NP_849695.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 327
Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/157 (87%), Positives = 140/157 (89%), Gaps = 12/157 (7%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 145
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 144/192 (75%), Positives = 154/192 (80%), Gaps = 17/192 (8%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SR L S F F L ++I
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSR-IIEPLASRCAKFRFKPLSEEIM 167
Query: 221 FDKEYIRIIYAS 232
RI+Y S
Sbjct: 168 SS----RILYIS 175
>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
Length = 345
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/169 (76%), Positives = 141/169 (83%), Gaps = 6/169 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP SQ WVEKYRPKQVKDVAHQ+EVVR L N LET N PH+LFYGPPGTGKT+TAL
Sbjct: 1 MAP----SQQWVEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTAL 56
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+ +LFGP+LYK+RVLELNASDDRGINVVRTKIK FAAVAVG G YPCPP+K+II
Sbjct: 57 AVTRELFGPQLYKTRVLELNASDDRGINVVRTKIKDFAAVAVGRGV--SDYPCPPFKVII 114
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLF 209
LDEADSMTEDAQNALRRTMETYSKVTRF FICNYISR + + F +
Sbjct: 115 LDEADSMTEDAQNALRRTMETYSKVTRFCFICNYISRLCKTIILCFRII 163
>gi|224106792|ref|XP_002333632.1| predicted protein [Populus trichocarpa]
gi|222837855|gb|EEE76220.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 263 bits (672), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 123/140 (87%), Positives = 129/140 (92%)
Query: 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117
K+ HQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL+GPELYKS VL
Sbjct: 11 KRCSSSRHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSMVL 70
Query: 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRR 177
ELNASDDRGINVV TKIK FA+VAVGSGQ +GGYPCPPYKI ILDEADSMTEDAQNALR
Sbjct: 71 ELNASDDRGINVVWTKIKDFASVAVGSGQCQGGYPCPPYKITILDEADSMTEDAQNALRL 130
Query: 178 TMETYSKVTRFFFICNYISR 197
TMET+SKVTRFFFICNYISR
Sbjct: 131 TMETFSKVTRFFFICNYISR 150
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 118/151 (78%), Positives = 133/151 (88%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR K+K FAA AVG+ GYPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVP--GYPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT+DAQNALRRTMETYS+VTRF FICNY+SR
Sbjct: 120 MTQDAQNALRRTMETYSRVTRFVFICNYVSR 150
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 118/151 (78%), Positives = 133/151 (88%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR K+K FAA AVG+ GYPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVP--GYPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT+DAQNALRRTMETYS+VTRF FICNY+SR
Sbjct: 120 MTQDAQNALRRTMETYSRVTRFVFICNYVSR 150
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/151 (78%), Positives = 129/151 (85%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+SQPWVEKYRP+ + DVAHQEEVVR L LETAN PHMLFYGPPGTGKTT ALAI QL
Sbjct: 4 TSQPWVEKYRPRNINDVAHQEEVVRTLEKALETANMPHMLFYGPPGTGKTTCALAICRQL 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR KIK FA+ AVG G GYP PPYKI+ILDEADS
Sbjct: 64 YGPELIKSRVLELNASDERGISVVRNKIKGFASTAVGQGAP--GYPSPPYKILILDEADS 121
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT DAQ+ALRRTMETYSKVTRFF +CNYISR
Sbjct: 122 MTNDAQSALRRTMETYSKVTRFFILCNYISR 152
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/151 (76%), Positives = 131/151 (86%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS PWVEKYRP+++ DV+HQEEVVR L LETAN PHMLFYGPPGTGKTT ALAI QL
Sbjct: 5 SSVPWVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHMLFYGPPGTGKTTCALAICRQL 64
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GP+L+KSRVLELNASD+RGI+VVR KIK FA+ AV GQ GYPCPPYKI+ILDEADS
Sbjct: 65 YGPDLFKSRVLELNASDERGISVVRNKIKGFASTAV--GQAVPGYPCPPYKILILDEADS 122
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT DAQ+ALRRTMET+SKVTRFF +CNY+SR
Sbjct: 123 MTTDAQSALRRTMETHSKVTRFFILCNYVSR 153
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/150 (74%), Positives = 130/150 (86%), Gaps = 2/150 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWV+KYRPK V +VAHQEEVV L LE+AN PH+LFYGPPGTGKT+TALA+A QL+
Sbjct: 5 AQPWVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLY 64
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GPEL K+RV ELNASD+RGINVVR KIK+FAA +V GQ GYPCPP+K++ILDEAD+M
Sbjct: 65 GPELAKARVKELNASDERGINVVREKIKSFAATSV--GQPVPGYPCPPFKLLILDEADAM 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T+DAQNALRRTME +SKVTRF FICNY+SR
Sbjct: 123 TQDAQNALRRTMEAHSKVTRFIFICNYVSR 152
>gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis]
Length = 293
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/151 (74%), Positives = 128/151 (84%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRP+ + +VAHQEEVV+ L + L + N PH+LFYGPPGTGKTT+ALAI QL
Sbjct: 2 AHQPWVEKYRPRSIGEVAHQEEVVQTLQHALSSGNLPHLLFYGPPGTGKTTSALAIVRQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FGPEL K+RVLELNASD+RGI VVR KIK FAA +VG G GYPCPP+K+IILDEADS
Sbjct: 62 FGPELCKARVLELNASDERGIGVVRDKIKNFAANSVGQGV--AGYPCPPFKVIILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT DAQNALRRTMETYS+VTRF FICNY+SR
Sbjct: 120 MTGDAQNALRRTMETYSRVTRFVFICNYVSR 150
>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/153 (73%), Positives = 125/153 (81%), Gaps = 1/153 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S QPW EKYRPK V DV HQEEVV L +LE N PH+LFYGPPG GKT+TA AIA Q
Sbjct: 4 KSQQPWTEKYRPKTVDDVVHQEEVVSALKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEA 164
LFGPELYK+RVLELNASD+RGINV+RTK+KTFA AV +G YPCPP+KIIILDEA
Sbjct: 64 LFGPELYKTRVLELNASDERGINVIRTKVKTFAQTAVSENPTGKGKYPCPPFKIIILDEA 123
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY+SR
Sbjct: 124 DSMTVDAQSALRRTMETYSNVTRFCLICNYVSR 156
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/193 (60%), Positives = 142/193 (73%), Gaps = 11/193 (5%)
Query: 14 NKSPNFTQKFSTTQSSP---------EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA 64
++SP T+K S ++P +KS V+RK + +QPWVEKYRPK + D++
Sbjct: 49 SQSPTATRKPSKKVTAPQGPMNVAIIDKSNGAVERKRPVLAAQAQPWVEKYRPKTIDDIS 108
Query: 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
QE VRVL +LE AN PHMLFYGPPGTGKT+T LA+A QLFGPE +++RVLELNASD+
Sbjct: 109 AQENTVRVLRKSLENANLPHMLFYGPPGTGKTSTILALAKQLFGPEAFRTRVLELNASDE 168
Query: 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184
RGI VVR KIK FA +A+ G YPCPPYKIIILDEADSMT+DAQ+ALRR ME YSK
Sbjct: 169 RGITVVREKIKNFAKIAISPAV--GDYPCPPYKIIILDEADSMTQDAQSALRRIMENYSK 226
Query: 185 VTRFFFICNYISR 197
+TRF ICNY++R
Sbjct: 227 ITRFCLICNYVTR 239
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 128/151 (84%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK V+DVA QE+VVRVL LET N PH LFYGPPGTGKTT ALAIA QL
Sbjct: 14 AHQPWVEKYRPKTVRDVASQEQVVRVLEQALETGNMPHCLFYGPPGTGKTTCALAIAKQL 73
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPELYK RV ELNASD+RGI+VVR K+KTFA++AVG+ GYP PPYKI+ILDEAD+
Sbjct: 74 YGPELYKQRVKELNASDERGISVVRDKVKTFASLAVGAPAP--GYPSPPYKILILDEADA 131
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT DAQ+A+RR METYSKVTRFF +CNY+++
Sbjct: 132 MTTDAQSAMRRMMETYSKVTRFFLLCNYVTK 162
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 133/178 (74%), Gaps = 6/178 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK V DVAHQ+EV L + T PH+LFYGPPGTGKT+TALA+A LFG
Sbjct: 28 QPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFG 87
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P+ Y+ R+LELNASD+RGI VVR KIKTFA VAVG + GYPCPP+K+IILDEAD+MT
Sbjct: 88 PDTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMT 147
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-----LDQISF 221
DAQ+ALRRTMETYS VTRF ICNY++R L S F F +L LD++S+
Sbjct: 148 PDAQSALRRTMETYSTVTRFCLICNYVTR-IIEPLASRCAKFRFSALGQGAMLDRLSY 204
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/151 (76%), Positives = 133/151 (88%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVNEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRV+ELNASD+RGI+VVR K+K+FAA AVG+ YPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPG--YPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT+DAQ+ALRRTMETYS+VTRF FICNY+SR
Sbjct: 120 MTQDAQSALRRTMETYSRVTRFVFICNYVSR 150
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/152 (71%), Positives = 128/152 (84%), Gaps = 2/152 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ VKDVA QE++V VL N L+T N PH LFYGPPGTGKTTTALAIA +
Sbjct: 13 EAHAPWVEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKE 72
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPELYK RV ELNASD+RGI+VVR KIKTFA+ AVG+ GYP PPYKI+ILDEAD
Sbjct: 73 LYGPELYKQRVKELNASDERGISVVRNKIKTFASQAVGAPAP--GYPSPPYKILILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+MT DAQ+ALRR METYSKVTRFF +CNY+++
Sbjct: 131 AMTGDAQSALRRMMETYSKVTRFFLLCNYVTK 162
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/149 (72%), Positives = 124/149 (83%), Gaps = 2/149 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWV+KYRPK+V DVA+Q EVV L +ET N PHMLFYGPPGTGKTT ALAI QL+G
Sbjct: 24 EPWVDKYRPKKVSDVAYQTEVVSALEKAMETHNLPHMLFYGPPGTGKTTCALAICKQLYG 83
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
PEL K RVLELNASD+RGI+VVR KIK+FA+ VG G GYPCPPYKI+ILDEADSMT
Sbjct: 84 PELGKKRVLELNASDERGISVVRGKIKSFASTTVGEGVP--GYPCPPYKILILDEADSMT 141
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ+ALRR METYS+VTRFF +CNY+S+
Sbjct: 142 NDAQSALRRMMETYSRVTRFFILCNYVSK 170
>gi|388852328|emb|CCF53943.1| probable RFC2-DNA replication factor C, 41 KD subunit [Ustilago
hordei]
Length = 383
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 143/197 (72%), Gaps = 6/197 (3%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ S S+ + ++ K K+A +S+PWVEKYRPK + DVA QE V VL TL
Sbjct: 2 FLQQASKAHSANQAAQ---KEKLAREKATSRPWVEKYRPKTIDDVAAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELVKTRVLELNASDERGITVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++R
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 TFSALFSFLLFFMFFSL 215
L S F F SL
Sbjct: 177 -IEPLASRCSKFRFRSL 192
>gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
Length = 368
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 122/150 (81%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 24 PWVEKYRPKNLDDVASQDHAVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 84 HLYKSRVLELNASDERGISIVRQKIKNFARLTISNPSKEDLENYPCPPYKIIILDEADSM 143
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTME YS VTRF ICNYI+R
Sbjct: 144 TNDAQSALRRTMENYSGVTRFCLICNYITR 173
>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
Length = 339
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/168 (67%), Positives = 129/168 (76%), Gaps = 3/168 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DVA Q+ VRVL TL++AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 13 PWVEKYRPKKLDDVASQDHAVRVLQKTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LY+SRVLELNASD+RGI++VR KIK FA + V S + YPCPPYKIIILDEADSM
Sbjct: 73 RLYRSRVLELNASDERGISIVRQKIKNFARLTVSNPSPEDLREYPCPPYKIIILDEADSM 132
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
T DAQ+ALRRTME YS VTRF ICNYI+R L S F F SL
Sbjct: 133 TNDAQSALRRTMENYSGVTRFCLICNYITRI-IDPLASRCSKFRFRSL 179
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/193 (60%), Positives = 139/193 (72%), Gaps = 4/193 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + D+A QE V VL TL+ AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKSLDDIAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + R YPCPP+KIIILDEADS
Sbjct: 93 PEMMKSRVLELNASDERGISIVRDKVKNFARMQLTNPPAGYRDKYPCPPFKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYI 226
MT+DAQ+ALRRTME YSK+TRF ICNY++R L S F F S LDQ S K
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRI-IDPLASRCSKFRFKS-LDQGSAKKRLE 210
Query: 227 RIIYASTLKFLEG 239
I A ++ +G
Sbjct: 211 EIATAESVPVDDG 223
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/196 (58%), Positives = 141/196 (71%), Gaps = 6/196 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP+ + D+A Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 35 QPWVEKYRPRSLDDIAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGYPCPPYKIIILDEA 164
PEL KSRVLELNASD+RGI++VR K+K FA + + + + R YPCPPYKIIILDEA
Sbjct: 95 PELVKSRVLELNASDERGISIVREKVKDFARMQLSNPPHAEEYRKKYPCPPYKIIILDEA 154
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKE 224
DSMT+DAQ+ALRRTMETYSK+TRF +CNY++R L S F F S LD+ + K
Sbjct: 155 DSMTQDAQSALRRTMETYSKITRFCLVCNYVTRI-IDPLASRCSKFRFKS-LDEGNAGKR 212
Query: 225 YIRIIYASTLKFLEGF 240
I +K EG
Sbjct: 213 IEDIARLENVKLDEGV 228
>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
reilianum SRZ2]
Length = 385
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/197 (58%), Positives = 143/197 (72%), Gaps = 6/197 (3%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ S ++ + ++ K K+A + +PWVEKYRPK + DVA QE V VL TL
Sbjct: 2 FLQQASKAHNAGQAAQ---KEKLAKEKAAMRPWVEKYRPKTIDDVAAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI+VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGISVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++R
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 TFSALFSFLLFFMFFSL 215
L S F F SL
Sbjct: 177 -IEPLASRCSKFRFRSL 192
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/190 (60%), Positives = 141/190 (74%), Gaps = 5/190 (2%)
Query: 38 KRKMAPV--LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
+RK+AP +SS+PWVEKYRPK++ +VA Q+ V VL TL ++N PHMLFYGPPGTGK
Sbjct: 10 RRKVAPEGESESSKPWVEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPPGTGK 69
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +LFGPEL K+RVLELNASD+RGI++VR K+K FA + V S + R +PC
Sbjct: 70 TSTILALTKELFGPELTKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRENHPC 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFF 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++R L S F F
Sbjct: 130 PPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRI-IDPLASRCSKFRFK 188
Query: 214 SLLDQISFDK 223
SL + D+
Sbjct: 189 SLDAANALDR 198
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/193 (60%), Positives = 139/193 (72%), Gaps = 4/193 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKSLDDVAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + R YPCPP+KIIILDEADS
Sbjct: 93 PEMMKSRVLELNASDERGISIVREKVKNFARMQLTNPPAGYREKYPCPPFKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYI 226
MT+DAQ+ALRRTME YSK+TRF ICNY++R L S F F S LDQ S K
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTR-IIDPLASRCSKFRFKS-LDQGSAMKRLE 210
Query: 227 RIIYASTLKFLEG 239
I A ++ +G
Sbjct: 211 EIAAAESVPLGDG 223
>gi|336272567|ref|XP_003351040.1| hypothetical protein SMAC_04344 [Sordaria macrospora k-hell]
gi|380090807|emb|CCC04977.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 387
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 146/217 (67%), Gaps = 18/217 (8%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ N PHMLF
Sbjct: 19 SNPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQATNLPHMLF 70
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SG 145
YGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 71 YGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSA 130
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFS 205
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S
Sbjct: 131 AYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLAS 189
Query: 206 FLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242
F F S LDQ + K I LEG GL
Sbjct: 190 RCSKFRFKS-LDQGNAKKRLEEIAQ------LEGVGL 219
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QE V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 19 PWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALARQLYGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
L+KSRVLELNASDDRGI++VR K+K FA +AV + + YPCPPYK+IILDEADSM
Sbjct: 79 RLFKSRVLELNASDDRGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRT+E YS VTRF ICNYI+R
Sbjct: 139 TNDAQSALRRTIENYSGVTRFCLICNYITR 168
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/190 (60%), Positives = 139/190 (73%), Gaps = 5/190 (2%)
Query: 38 KRKMAPVLQS--SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
KRK++ + S +QPWVEKYRPK++ DVA QE V VL TL +AN PHMLFYGPPGTGK
Sbjct: 9 KRKISSEVDSEQTQPWVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGK 68
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +LFGP L KSRVLELNASD+RGI++VR K+K FA + V S + YPC
Sbjct: 69 TSTILALTKELFGPNLIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKYPC 128
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFF 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS +TRF ICNY++R L S F F
Sbjct: 129 PPYKIIILDEADSMTADAQSALRRTMETYSNITRFCLICNYVTRI-IDPLASRCSKFRFK 187
Query: 214 SLLDQISFDK 223
+L + + D+
Sbjct: 188 ALDETNALDR 197
>gi|344299747|gb|EGW30100.1| replication factor C, subunit RFC4 [Spathaspora passalidarum NRRL
Y-27907]
Length = 346
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 121/150 (80%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA QE V +L TL TAN PHMLFYGPPGTGKT+T LA++ QLFGP
Sbjct: 16 PWVEKYRPKNLDDVASQEHAVAILKRTLATANLPHMLFYGPPGTGKTSTILALSKQLFGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L KSRVLELNASD+RGIN+VR+KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 76 NLSKSRVLELNASDERGINIVRSKIKNFARLTISNPTPEDLANYPCPPYKIIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTMETYS +TRF ICNYI+R
Sbjct: 136 TNDAQSALRRTMETYSGMTRFCLICNYITR 165
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 124/150 (82%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 35 PWVEKYRPKNLNDVSAQDHTISVLKRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
EL KSRVLELNASD+RGI++VR K+K FA + V S + YPCPPYKIIILDEADSM
Sbjct: 95 ELMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPCPPYKIIILDEADSM 154
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 155 TQDAQSALRRTMETYSKITRFCLICNYVTR 184
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/181 (61%), Positives = 134/181 (74%), Gaps = 4/181 (2%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+ K P +QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+
Sbjct: 23 QEKQNPEATRAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTS 82
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS---GQRRGGYPCP 154
T LA+A +LFGPEL +SRVLELNASD+RGI++VR K+K FA + + + G R YPCP
Sbjct: 83 TVLALAKELFGPELMRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCP 142
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFS 214
P+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F S
Sbjct: 143 PFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKS 201
Query: 215 L 215
L
Sbjct: 202 L 202
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 105/154 (68%), Positives = 123/154 (79%), Gaps = 2/154 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+PWVEKYRPKQ+ D+A Q V VL TL++AN PHMLFYGPPGTGKT+T LA+A +
Sbjct: 20 HQSKPWVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LFGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 140 ADSMTSDAQSALRRTMETYSGVTRFCLICNYVTR 173
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 130/169 (76%), Gaps = 3/169 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 32 QPWVEKYRPKNLNDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 92 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRALYPCPPYKIIILDEADS 151
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
MT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F SL
Sbjct: 152 MTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKSL 199
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 116/203 (57%), Positives = 143/203 (70%), Gaps = 9/203 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 34 QPWVEKYRPKSLDDVAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG------SGQR-RGGYPCPPYKIIIL 161
PEL KSRVLELNASD+RGI++VR K+K FA + + +G+ R YPCPPYKII+L
Sbjct: 94 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKIIVL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISF 221
DEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++R L S F F LLD+ +
Sbjct: 154 DEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRI-IDPLASRCSKFR-FKLLDEGNA 211
Query: 222 DKEYIRIIYASTLKFLEGFGLSL 244
+ I + EG +L
Sbjct: 212 GRRIEDIARLENVTLEEGVTNTL 234
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 117/202 (57%), Positives = 144/202 (71%), Gaps = 10/202 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRPK++++V Q+ V VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 20 EQSKPWVEKYRPKKLEEVTAQDHAVTVLKKTLESANLPHMLFYGPPGTGKTSTILALTKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL K+RVLELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LFGPELAKTRVLELNASDERGISIVREKVKNFARLTVSKSSKEDLEKYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-----LDQ 218
ADSMT DAQ+ALRRTMETYS VTRF ICNYI+R L S F F SL LD+
Sbjct: 140 ADSMTADAQSALRRTMETYSGVTRFCLICNYITRI-IDPLASRCSKFRFKSLEATNALDR 198
Query: 219 ISF--DKEYIRIIYASTLKFLE 238
+ + +KE ++ + K LE
Sbjct: 199 LKYISEKESVQYEEGTLEKILE 220
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 128/168 (76%), Gaps = 8/168 (4%)
Query: 38 KRKM------APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
KRK+ + L S+PWVEKYRPKQ+ D+ Q V VL TL++AN PHMLFYGPP
Sbjct: 10 KRKLDNTESSSSALHQSKPWVEKYRPKQLDDITAQGHAVSVLKKTLQSANLPHMLFYGPP 69
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-- 149
GTGKT+T LA+A +L+GPEL KSR+LELNASD+RGI++VR K+K FA + V +
Sbjct: 70 GTGKTSTILALAKELYGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLE 129
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 130 NYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 177
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 123/150 (82%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QE V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 19 PWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
L+KSRVLELNASD+RGI++VR K+K FA +AV + + YPCPPYK+IILDEADSM
Sbjct: 79 RLFKSRVLELNASDERGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRT+E YS VTRF ICNYI+R
Sbjct: 139 TNDAQSALRRTIENYSGVTRFCLICNYITR 168
>gi|448537421|ref|XP_003871334.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380355691|emb|CCG25209.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 355
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 120/150 (80%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+A QE V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + + YPCPPYKIIILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTMETY+ +TRF +CNYI+R
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITR 164
>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
Length = 384
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 134/178 (75%), Gaps = 3/178 (1%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K K+A +++PWVEKYRPK + +VA QE V VL TL + N PHMLFYGPPGTGKT+
Sbjct: 18 KEKLAKEKAANRPWVEKYRPKTIDEVAAQEHTVAVLKKTLLSNNLPHMLFYGPPGTGKTS 77
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA +AV + + G+PCPP+K
Sbjct: 78 TILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFAKLAVTNPKE--GFPCPPFK 135
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
IIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++R L S F F SL
Sbjct: 136 IIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI-IEPLASRCSKFRFRSL 192
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/209 (57%), Positives = 146/209 (69%), Gaps = 12/209 (5%)
Query: 38 KRKMAPV--LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
KRK+ P L +++PWVEKYRP+ + DVA Q+ V VL TL +AN PHMLFYGPPGTGK
Sbjct: 11 KRKIQPEGDLDNNKPWVEKYRPRNLDDVAAQDHAVAVLKRTLGSANLPHMLFYGPPGTGK 70
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +LFGP+L KSRVLELNASD+RGI++VR K+K FA + V S YPC
Sbjct: 71 TSTILALTKELFGPQLVKSRVLELNASDERGISIVREKVKNFARLTVSKPSKDDLENYPC 130
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFF 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++R L S F F
Sbjct: 131 PPYKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRI-IDPLASRCSKFRFK 189
Query: 214 SLLDQISFDKEYIRIIYAST---LKFLEG 239
+L + + D R+ Y +T K+ EG
Sbjct: 190 ALDETNALD----RLKYVATQESTKYEEG 214
>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
Length = 363
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/150 (66%), Positives = 122/150 (81%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ QE ++VLT T+++ N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 25 PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 85 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSM 144
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTME Y+ +TRF ICNYI+R
Sbjct: 145 TNDAQSALRRTMENYAGITRFVLICNYITR 174
>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
Length = 387
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 146/216 (67%), Gaps = 18/216 (8%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASR 190
Query: 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242
F F S LDQ + K I LEG GL
Sbjct: 191 CSKFRFKS-LDQGNAKKRLEEIAQ------LEGVGL 219
>gi|354544379|emb|CCE41102.1| hypothetical protein CPAR2_300910 [Candida parapsilosis]
Length = 357
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 120/150 (80%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+A QE V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + + YPCPPYKIIILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTMETY+ +TRF +CNYI+R
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITR 164
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 145/217 (66%), Gaps = 19/217 (8%)
Query: 39 RKMAP------VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPG 92
RKMA VL S+ PWVEKYRPK ++ V Q+ RVL TL A+ PHMLFYGPPG
Sbjct: 14 RKMAEAPSNPTVLPSALPWVEKYRPKNIESVEGQDATTRVLAKTLHRADLPHMLFYGPPG 73
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
TGKT+T LA+A +LFGPEL KSRVLELNASD+RGI+VVR KIK+FA V++ YP
Sbjct: 74 TGKTSTILALARELFGPELMKSRVLELNASDERGISVVRDKIKSFAKVSISPAT--NAYP 131
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMF 212
CPP+KIIILDEADSMT+DAQ+ALRR ME YSK+TRF ICNY++R + S F F
Sbjct: 132 CPPFKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTR-IIEPIVSRCSKFRF 190
Query: 213 --FSLLDQISFDKEYIRI--------IYASTLKFLEG 239
S D +S E R+ + AS +K +G
Sbjct: 191 TPLSSTDTLSRLNEICRLENVKVAEPVLASLIKVSDG 227
>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 364
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/150 (66%), Positives = 122/150 (81%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ QE ++VLT T+++ N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 26 PWVEKYRPKSLSDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 86 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLANYPCPPYKIIILDEADSM 145
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTME Y+ +TRF ICNYI+R
Sbjct: 146 TYDAQSALRRTMENYAGITRFVLICNYITR 175
>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
Length = 366
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 146/216 (67%), Gaps = 18/216 (8%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASR 190
Query: 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242
F F S LDQ + K I LEG GL
Sbjct: 191 CSKFRFKS-LDQGNAKKRLEEIAQ------LEGVGL 219
>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
Length = 369
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/150 (67%), Positives = 121/150 (80%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DVA Q+ V+VL T+E+AN PHMLFYGPPGTGKT+T LA++ QL+GP
Sbjct: 24 PWVEKYRPRNLDDVASQDHAVKVLKKTMESANLPHMLFYGPPGTGKTSTILALSKQLYGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + + YPCPPYKIIILDEADSM
Sbjct: 84 NLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPSKEDLEKYPCPPYKIIILDEADSM 143
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ ALRRT+E YS +TRF ICNY++R
Sbjct: 144 TNDAQAALRRTIENYSNITRFCLICNYVTR 173
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 119/150 (79%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 36 PWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + YPCPPYKIIILDEADSM
Sbjct: 96 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTMETY+ +TRF +CNYI+R
Sbjct: 156 TNDAQSALRRTMETYANITRFALVCNYITR 185
>gi|350296832|gb|EGZ77809.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2509]
Length = 387
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 146/216 (67%), Gaps = 18/216 (8%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL K+RVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKARVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASR 190
Query: 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242
F F S LDQ + K I LEG GL
Sbjct: 191 CSKFRFKS-LDQGNAKKRLEEIAQ------LEGVGL 219
>gi|347829788|emb|CCD45485.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 379
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 130/169 (76%), Gaps = 3/169 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
MT+DAQ+ALRRTMETYS++TRF ICNY++R L S F F SL
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTRI-IDPLASRCSKFRFKSL 200
>gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
Length = 354
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 101/150 (67%), Positives = 121/150 (80%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D++ QE V+VLT T+ + N PHMLFYGPPGTGKT+T LA+A L+GP
Sbjct: 22 PWVEKYRPKSLSDISSQEHTVKVLTQTITSGNLPHMLFYGPPGTGKTSTILALAKTLYGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 82 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPSKEDLEKYPCPPYKIIILDEADSM 141
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTMETY+ +TRF ICNYI+R
Sbjct: 142 TNDAQSALRRTMETYAGITRFVLICNYITR 171
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 126/155 (81%), Gaps = 2/155 (1%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ ++PWVEKYRPK+++DV Q V+VL TLE+AN PHMLFYGPPGTGKT+T LA+
Sbjct: 19 IEQNKPWVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTK 78
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILD 162
+LFGPEL K+RVLELNASD+RGI++VR K+K FA + V + + +PCPPYKIIILD
Sbjct: 79 ELFGPELMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILD 138
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EADSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 139 EADSMTADAQSALRRTMETYSNVTRFCLICNYVTR 173
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/193 (59%), Positives = 137/193 (70%), Gaps = 11/193 (5%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
TT SS EK + E R QPWVEKYRPK + DV Q+ + VL TL+ +N PH
Sbjct: 18 TTSSSTEKQKSETTR--------VQPWVEKYRPKTLSDVTAQDHTITVLERTLQASNLPH 69
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 70 MLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTN 129
Query: 145 --GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSA 202
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 130 PPAGYKTRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDP 188
Query: 203 LFSFLLFFMFFSL 215
L S F F SL
Sbjct: 189 LASRCSKFRFKSL 201
>gi|402225443|gb|EJU05504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/171 (63%), Positives = 129/171 (75%), Gaps = 3/171 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S QPW+EKYRPK +++++ QE V+VL TL +AN PHMLFYGPPGTGKT+T LA+A QL
Sbjct: 24 SLQPWIEKYRPKTMEEISAQEHTVQVLKKTLGSANLPHMLFYGPPGTGKTSTILALARQL 83
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEA 164
FGPEL++SRVLELNASD+RGI VVR KIK FA + GYPCPPYKIIILDEA
Sbjct: 84 FGPELFRSRVLELNASDERGITVVREKIKNFARQTPRAADDEASKGYPCPPYKIIILDEA 143
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
DSMT+DAQ ALRR METY+K+TRF +CNY++R L S F F +L
Sbjct: 144 DSMTQDAQAALRRVMETYAKITRFCLVCNYVTRI-IEPLASRCSKFRFHTL 193
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 122/150 (81%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 36 PWVEKYRPKTLSDVTAQDHTVSVLRRTLQSSNLPHMLFYGPPGTGKTSTILALAKELYGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
EL K+RVLELNASD+RGI++VR K+K FA +AV + YPCPPYKIIILDEADSM
Sbjct: 96 ELMKTRVLELNASDERGISIVREKVKNFAKIAVSTTTAANASKYPCPPYKIIILDEADSM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 156 THDAQSALRRTMETYSKITRFCLICNYVTR 185
>gi|443896109|dbj|GAC73453.1| replication factor C, subunit RFC4 [Pseudozyma antarctica T-34]
Length = 383
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 141/197 (71%), Gaps = 6/197 (3%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ + ++ + ++ K K+A + +PWVEKYRPK + +V QE V VL TL
Sbjct: 2 FLQQATKAHNASQAAQ---KEKLAKEKAARRPWVEKYRPKTIDEVTAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++R
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 TFSALFSFLLFFMFFSL 215
L S F F SL
Sbjct: 177 -IEPLASRCSKFRFRSL 192
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 123/154 (79%), Gaps = 2/154 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRP+++ DVA Q + VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 19 EESKPWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKE 78
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGP L KSRVLELNASD+RGI++VR K+K FA + V + + YPCPPYKIIILDE
Sbjct: 79 LFGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDE 138
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 139 ADSMTADAQSALRRTMETYSSVTRFCLICNYVTR 172
>gi|452836376|gb|EME38320.1| hypothetical protein DOTSEDRAFT_161207 [Dothistroma septosporum
NZE10]
Length = 410
Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/203 (56%), Positives = 143/203 (70%), Gaps = 9/203 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 34 QPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SG----QRRGGYPCPPYKIIIL 161
PEL K+RVLELNASD+RGI++VR K+K FA + + SG + + YPCPPYKII+L
Sbjct: 94 PELMKTRVLELNASDERGISIVREKVKDFARMQLSNPPSGPAGEEYKKKYPCPPYKIIVL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISF 221
DEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++R L S F F S LD+ +
Sbjct: 154 DEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTR-IIDPLASRCSKFRFKS-LDEGNA 211
Query: 222 DKEYIRIIYASTLKFLEGFGLSL 244
+ I +K EG +L
Sbjct: 212 GRRIEDIAKLEGVKMEEGVTETL 234
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 123/154 (79%), Gaps = 2/154 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRP+++ DVA Q + VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 19 EESKPWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKE 78
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGP L KSRVLELNASD+RGI++VR K+K FA + V + + YPCPPYKIIILDE
Sbjct: 79 LFGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDE 138
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 139 ADSMTADAQSALRRTMETYSSVTRFCLICNYVTR 172
>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 130/169 (76%), Gaps = 3/169 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
MT+DAQ+ALRRTMETYS++TRF ICNY++R L S F F SL
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTR-IIDPLASRCSKFRFKSL 200
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 104/152 (68%), Positives = 122/152 (80%), Gaps = 2/152 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S+PWVEKYRPK+++DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L+
Sbjct: 23 SKPWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GP L KSRVLELNASD+RGI +VR KIK+FA + V S R YPCPPYKIIILDEAD
Sbjct: 83 GPALMKSRVLELNASDERGIAIVRDKIKSFARLTVSKPSQNDREKYPCPPYKIIILDEAD 142
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT DAQ+ALRRTME YS VTRF ICNY++R
Sbjct: 143 SMTADAQSALRRTMENYSNVTRFCLICNYVTR 174
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/199 (56%), Positives = 140/199 (70%), Gaps = 4/199 (2%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P +QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+
Sbjct: 26 PADVRAQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILAL 85
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIII 160
A +L+GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIII
Sbjct: 86 AKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIII 145
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F S LDQ +
Sbjct: 146 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKS-LDQSN 203
Query: 221 FDKEYIRIIYASTLKFLEG 239
K I A + +G
Sbjct: 204 AKKRLESIAEAEGVTLEDG 222
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 123/154 (79%), Gaps = 2/154 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK++ DVA Q+ VV VL TL +AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 22 EHNKPWVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKE 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL K+RVLELNASD+RGI++VR K+K FA + V + Y CPPYKIIILDE
Sbjct: 82 LFGPELMKTRVLELNASDERGISIVREKVKNFARLTVSKPSKHDLENYLCPPYKIIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 142 ADSMTADAQSALRRTMETYSTVTRFCLICNYVTR 175
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/180 (61%), Positives = 133/180 (73%), Gaps = 3/180 (1%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+ K P +QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+
Sbjct: 23 QEKQNPENTRTQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTS 82
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPP 155
T LA+A +LFGPEL KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP
Sbjct: 83 TVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYKSKYPCPP 142
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F SL
Sbjct: 143 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR-IIDPLASRCSKFRFKSL 201
>gi|255638181|gb|ACU19404.1| unknown [Glycine max]
Length = 149
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/136 (81%), Positives = 118/136 (86%), Gaps = 1/136 (0%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKTTTALAIAHQLFGPELYK RVLELNASDDRGINVVRTKIK FAAVAVG+
Sbjct: 1 MLFYGPPGTGKTTTALAIAHQLFGPELYKFRVLELNASDDRGINVVRTKIKDFAAVAVGT 60
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALF 204
QR+ GYPCPP+KII+LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SR L
Sbjct: 61 NQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSR-IIEPLA 119
Query: 205 SFLLFFMFFSLLDQIS 220
S F F LL+ +S
Sbjct: 120 SRCAKFRFKPLLNSMS 135
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 133/181 (73%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELNASD+RGI VVR K+K FA +AV SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRSRVLELNASDERGIQVVREKVKNFAQLAV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY++R L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVTR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/172 (61%), Positives = 129/172 (75%), Gaps = 6/172 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGIN+VR KIK FA + + + R YPCPP+KIIILDE
Sbjct: 96 PKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
ADSMT+DAQ+ALRRTME +S++TRF +CNY++R L S F F SL
Sbjct: 156 ADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRI-IDPLASRCSKFRFKSL 206
>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 412
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 130/169 (76%), Gaps = 3/169 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
MT+DAQ+ALRRTMETYS++TRF ICNY++R L S F F SL
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTRI-IDPLASRCSKFRFKSL 200
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 138/196 (70%), Gaps = 17/196 (8%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +S EK +E R +QPWVEKYRPK++ DV Q+ + VL TL+ +N PH
Sbjct: 18 TASTSTEKQTNENAR--------AQPWVEKYRPKKLSDVTAQDHTITVLERTLQASNLPH 69
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA +
Sbjct: 70 MLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTN 129
Query: 143 ---GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
G R YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 130 PPPGYKSR---YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI- 185
Query: 200 FSALFSFLLFFMFFSL 215
L S F F SL
Sbjct: 186 IDPLASRCSKFRFKSL 201
>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 393
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/172 (61%), Positives = 129/172 (75%), Gaps = 6/172 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGIN+VR KIK FA + + + R YPCPP+KIIILDE
Sbjct: 96 PKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
ADSMT+DAQ+ALRRTME +S++TRF +CNY++R L S F F SL
Sbjct: 156 ADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRI-IDPLASRCSKFRFKSL 206
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/170 (62%), Positives = 131/170 (77%), Gaps = 3/170 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPEMIKSRVLELNASDERGISIVREKVKDFARMQLTNPTNEYKKRYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
SMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F SL
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKSL 200
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 121/150 (80%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V+VL TL +AN PHMLFYGPPGTGKT+T LA+A L+GP
Sbjct: 23 PWVEKYRPKSLDDVASQDHTVKVLKRTLVSANLPHMLFYGPPGTGKTSTILALAKSLYGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L+KSRVLELNASD+RGI++VR KIK FA + + S + YPCPPYKIIILDEADSM
Sbjct: 83 ILFKSRVLELNASDERGISIVRQKIKNFARLTISNPSPEDLEKYPCPPYKIIILDEADSM 142
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTMETYS VTRF +CNYI+R
Sbjct: 143 TNDAQSALRRTMETYSGVTRFCLVCNYITR 172
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 120/154 (77%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 423 QPWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 482
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDE
Sbjct: 483 PALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDE 542
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTMETYS++TRF +CNY++R
Sbjct: 543 ADSMTQDAQSALRRTMETYSRITRFCLVCNYVTR 576
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 120/154 (77%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 423 QPWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 482
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDE
Sbjct: 483 PALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDE 542
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTMETYS++TRF +CNY++R
Sbjct: 543 ADSMTQDAQSALRRTMETYSRITRFCLVCNYVTR 576
>gi|398402105|ref|XP_003853207.1| replication factor C subunit 2 [Zymoseptoria tritici IPO323]
gi|339473089|gb|EGP88183.1| hypothetical protein MYCGRDRAFT_100072 [Zymoseptoria tritici
IPO323]
Length = 408
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/174 (63%), Positives = 131/174 (75%), Gaps = 8/174 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 32 QPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SG----QRRGGYPCPPYKIIIL 161
PEL K+RVLELNASD+RGI++VR K+K FA + + SG + R Y CPPYKIIIL
Sbjct: 92 PELIKTRVLELNASDERGISIVREKVKNFARMQLSNPPSGPAGEEYRKKYSCPPYKIIIL 151
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
DEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F SL
Sbjct: 152 DEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKSL 204
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 140/194 (72%), Gaps = 4/194 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V +L TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 AQPWVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTILALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPEL K+RVLELNASD+RGI++VR K+K FA + + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPELIKTRVLELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEY 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F S LDQ + +
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKS-LDQGNAKRRL 209
Query: 226 IRIIYASTLKFLEG 239
I ++ EG
Sbjct: 210 EEIAKNEGVELEEG 223
>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Komagataella pastoris CBS 7435]
Length = 324
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 126/152 (82%), Gaps = 2/152 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK++ +V+ Q V+RVL+N L++AN PH+LFYGPPGTGKT+T LA+A +LF
Sbjct: 2 STPWVEKYRPKKLDEVSAQSNVIRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMARELF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GP+L KSRVLELNASD+RGI++VR K+K FA ++V + + + YPCPPYK+IILDEAD
Sbjct: 62 GPQLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT DAQ+ALRR ME YS +TRF ICNYI+R
Sbjct: 122 SMTFDAQSALRRIMENYSHITRFCIICNYITR 153
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/237 (53%), Positives = 154/237 (64%), Gaps = 18/237 (7%)
Query: 13 KNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRV 72
K S + +F+ ++ P S E K K+ PV PWVEKYRPK V +VA QEEVV V
Sbjct: 6 KGTSVSTKPQFTKDRAIPTGSSGETK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAV 59
Query: 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132
L +LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 119
Query: 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
K+K FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF IC
Sbjct: 120 KVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 178
Query: 193 NYISRCTFSALFSFLLFFMFFSLLDQIS-------FDKEYIRI---IYASTLKFLEG 239
NY+SR L S F F L D+I +KE ++I + A +K EG
Sbjct: 179 NYVSR-IIEPLTSRCSKFRFKPLSDKIQRERLLDIAEKENVKISHEVIAYLVKVSEG 234
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/170 (65%), Positives = 128/170 (75%), Gaps = 2/170 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 38 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L++SRVLELNASD+RGI VVR K+K FA +AV SG R G PCPP+KI+ILDEADSMT
Sbjct: 98 DLFRSRVLELNASDERGIQVVREKVKNFAQLAV-SGSRSDGKPCPPFKIVILDEADSMTS 156
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
AQ ALRRTME SK TRF ICNY+SR L S F F L D+I
Sbjct: 157 AAQAALRRTMEKESKATRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDKI 205
>gi|336464731|gb|EGO52971.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2508]
Length = 387
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 144/216 (66%), Gaps = 18/216 (8%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R + PWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AHPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTME YSK+TRF ICNY++R L S
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMEMYSKITRFCLICNYVTRI-IDPLASR 190
Query: 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242
F F S LDQ + K I LEG GL
Sbjct: 191 CSKFRFKS-LDQGNAKKRLEEIAQ------LEGVGL 219
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/164 (64%), Positives = 125/164 (76%), Gaps = 4/164 (2%)
Query: 38 KRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
K+K+ P Q PWVEKYRP+++ DVA Q+ V VL TL+TAN PHMLFYGPPGTGK
Sbjct: 9 KQKLNPSDGKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGK 68
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +L+GP L SRVLELNASD+RGI++VR K+K FA + V S YPC
Sbjct: 69 TSTILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPC 128
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
PPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 129 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 172
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/153 (66%), Positives = 122/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V+VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/197 (56%), Positives = 133/197 (67%), Gaps = 7/197 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 39 QPWVEKYRPKSLDDVAAQDHTTTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 98
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY++R+LELNASD+RGIN+VR KIK FA + R YPCPP+KIIILDE
Sbjct: 99 PTLYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAYREKYPCPPFKIIILDE 158
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R L S F F + LD +S
Sbjct: 159 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRI-IEPLASRCSKFRFKA-LDGVSAGD 216
Query: 224 EYIRIIYASTLKFLEGF 240
I A L EG
Sbjct: 217 RISEIAAAEGLTLDEGV 233
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/153 (66%), Positives = 122/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V+VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/193 (58%), Positives = 138/193 (71%), Gaps = 4/193 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 32 QPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEADS
Sbjct: 92 PEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPHYKDKYPCPPFKIIILDEADS 151
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYI 226
MT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F S LDQ + K
Sbjct: 152 MTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKS-LDQGNAKKRLE 209
Query: 227 RIIYASTLKFLEG 239
I A + +G
Sbjct: 210 SIAEAEGVALEDG 222
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/170 (61%), Positives = 131/170 (77%), Gaps = 3/170 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 TQPWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEAD 165
GP++ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYKDKYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
SMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F SL
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKSL 200
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 IS-------FDKEYIRI 228
I DKE+++I
Sbjct: 206 IQQQRLLDIADKEHVKI 222
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 143/208 (68%), Gaps = 15/208 (7%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+P+ S E R+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LF
Sbjct: 24 SAPQGSSAE-SRRAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 77
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A +L+GPEL++ RVLELNASD+RGI V+R K+KTFA + V SG R
Sbjct: 78 YGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVIREKVKTFAQLTV-SGSR 136
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFL 207
G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S
Sbjct: 137 SDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRC 195
Query: 208 LFFMFFSLLDQISF-------DKEYIRI 228
F F L D+I +KE ++I
Sbjct: 196 SKFRFKPLSDKIQHQRLLDISEKENVKI 223
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 IS-------FDKEYIRI 228
I DKE+++I
Sbjct: 206 IQQQRLLDIADKEHVKI 222
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 IS-------FDKEYIRI 228
I DKE+++I
Sbjct: 206 IQQQRLLDIADKEHVKI 222
>gi|449299144|gb|EMC95158.1| hypothetical protein BAUCODRAFT_35150 [Baudoinia compniacensis UAMH
10762]
Length = 411
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/199 (55%), Positives = 140/199 (70%), Gaps = 9/199 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP+ + DV Q+ V VL L+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 35 QPWVEKYRPRSLDDVTAQDHTVTVLRRMLQSSNLPHMLFYGPPGTGKTSTVLALAKQLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG------SGQR-RGGYPCPPYKIIIL 161
PEL KSRVLELNASD+RGI++VR K+K FA + + +G+ R YPCPPYKI++L
Sbjct: 95 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKIVVL 154
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISF 221
DEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F S LD+ +
Sbjct: 155 DEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR-IIDPLASRCSKFRFKS-LDEANA 212
Query: 222 DKEYIRIIYASTLKFLEGF 240
K I ++ +G
Sbjct: 213 GKRLEDIAKLENVRLQDGV 231
>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
gi|296491286|tpg|DAA33349.1| TPA: replication factor C 4 [Bos taurus]
Length = 337
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 IS-------FDKEYIRI 228
I DKE+++I
Sbjct: 206 IQQQRLLDIADKEHVKI 222
>gi|426217728|ref|XP_004003104.1| PREDICTED: replication factor C subunit 4 isoform 2 [Ovis aries]
Length = 337
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 IS-------FDKEYIRI 228
I DKE+++I
Sbjct: 206 IQQQRLLDIADKEHVKI 222
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 86 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 203
Query: 219 IS-------FDKEYIRI 228
I DKE+++I
Sbjct: 204 IQQQRLLDIADKEHVKI 220
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/175 (61%), Positives = 131/175 (74%), Gaps = 3/175 (1%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P +QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+
Sbjct: 26 PADVRAQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILAL 85
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIII 160
A +L+GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIII
Sbjct: 86 AKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIII 145
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
LDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F SL
Sbjct: 146 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKSL 199
>gi|340992727|gb|EGS23282.1| replication factor C subunit 2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 384
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 147/227 (64%), Gaps = 12/227 (5%)
Query: 15 KSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLT 74
K+ Q T +S EK E R +QPWVEKYRPK + DV Q+ V VL
Sbjct: 8 KARRAAQSNGTASTSTEKQTAEHTR--------AQPWVEKYRPKTLNDVTAQDHTVSVLQ 59
Query: 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134
TL+ +N PHMLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI+++R K+
Sbjct: 60 RTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIIREKV 119
Query: 135 KTFAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
K FA + + + YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF IC
Sbjct: 120 KDFARTQLTNPPPGYKTKYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLIC 179
Query: 193 NYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEG 239
NY++R L S F F S LDQ + K I + +G
Sbjct: 180 NYVTRI-IDPLASRCSKFRFKS-LDQGNARKRLEEIAQLENVGLADG 224
>gi|452825574|gb|EME32570.1| replication factor C [Galdieria sulphuraria]
Length = 354
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/183 (59%), Positives = 132/183 (72%), Gaps = 2/183 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP L PWVEKYRP ++KD+ +Q+E ++L N L + N PH LFYGPPGTGKT+ AL
Sbjct: 1 MAPSLPEELPWVEKYRPNKIKDLVYQQEAAQLLHNCLTSGNLPHCLFYGPPGTGKTSAAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A +LF PE+YK RVLELNASD+RGI VVR KIK FA +V S Q G+PCPP+KIII
Sbjct: 61 AFCKELFPPEIYKDRVLELNASDERGIKVVREKIKRFAQGSVSSAQFE-GFPCPPFKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEAD++T DAQ ALRRTME +SK+TRFF +CNY++R L S F F SL Q+
Sbjct: 120 LDEADAITPDAQTALRRTMEQFSKITRFFLLCNYVTR-VIDPLASRCAKFRFRSLPMQLQ 178
Query: 221 FDK 223
D+
Sbjct: 179 VDR 181
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/197 (58%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V ++A QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KKTKPV-----PWVEKYRPKCVDEIAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 86
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 87 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 145
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 204
Query: 219 IS-------FDKEYIRI 228
I DKE+++I
Sbjct: 205 IQQQRLLDIADKEHVKI 221
>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 389
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 101/154 (65%), Positives = 122/154 (79%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 33 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-----GSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 93 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDE 152
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 153 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 186
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 135/180 (75%), Gaps = 3/180 (1%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+++ P +QPWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+
Sbjct: 22 QKQDKPTNTRNQPWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTS 81
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPP 155
T LA+A +L+GP++ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP
Sbjct: 82 TVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPP 141
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F SL
Sbjct: 142 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKSL 200
>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ER-3]
Length = 389
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 101/154 (65%), Positives = 122/154 (79%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 33 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-----GSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 93 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDE 152
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 153 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 186
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/180 (60%), Positives = 132/180 (73%), Gaps = 3/180 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK + +V Q+ V VL TL++A+ PHMLFYGPPGTGKT+T LA+ +
Sbjct: 20 EENKPWVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTSTILALTKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL KSRVLELNASD+RGI++VR K+K FA + V + YPCPP+KIIILDE
Sbjct: 80 LFGPELTKSRVLELNASDERGISIVREKVKNFARLTVSKPSKNDLEKYPCPPFKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
ADSMT DAQ+ALRRTMETYS VTRF ICNYI+R L S F F SL + + D+
Sbjct: 140 ADSMTADAQSALRRTMETYSSVTRFCLICNYITRI-IDPLASRCSKFRFKSLDESNAMDR 198
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 113/180 (62%), Positives = 132/180 (73%), Gaps = 7/180 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK+V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKRVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELNASD+RGI VVR K+K+FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRSRVLELNASDERGIQVVREKVKSFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
>gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
Length = 373
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 120/150 (80%), Gaps = 1/150 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP+ + DVAHQ+EVV VL L+ A+ P+ LFYGPPGTGKT+T LA A L+
Sbjct: 33 SVPWVEKYRPRSIDDVAHQDEVVSVLRKCLQGADLPNFLFYGPPGTGKTSTILAAARHLY 92
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G ++Y+SRVLELNASDDRGI V+R KIKTFA ++V + QR G PCPP+KIIILDEADSM
Sbjct: 93 GSDIYRSRVLELNASDDRGIQVIREKIKTFAQLSVAN-QRPDGTPCPPFKIIILDEADSM 151
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T AQ ALRRTME YSK TRF ICNY+SR
Sbjct: 152 THAAQAALRRTMEKYSKTTRFCLICNYVSR 181
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/197 (58%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KKTKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 86
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 87 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 145
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 204
Query: 219 IS-------FDKEYIRI 228
I DKE++++
Sbjct: 205 IQQQRLLDIADKEHVKV 221
>gi|355716186|gb|AES05531.1| replication factor C 4, 37kDa [Mustela putorius furo]
Length = 272
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 29 KKTKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 83
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 84 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 142
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 143 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 201
Query: 219 IS-------FDKEYIRI 228
I DKE+++I
Sbjct: 202 IQQQRLLDIADKEHVKI 218
>gi|350635059|gb|EHA23421.1| hypothetical protein ASPNIDRAFT_47138 [Aspergillus niger ATCC 1015]
Length = 758
Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 121/154 (78%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 404 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 463
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQR-RGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 464 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 523
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 524 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 557
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 101/151 (66%), Positives = 121/151 (80%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ +PWVEKYRP+ DVAHQ +V+ L T+ A+ PH+LFYGPPGTGKT+T LA++ +L
Sbjct: 21 AEKPWVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSREL 80
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FGP+L K RVLELNASD+RGI+VVR KIKTFA+ +V G GYPCPP+KIIILDEAD+
Sbjct: 81 FGPQLMKERVLELNASDERGISVVREKIKTFASTSVSKGV--DGYPCPPFKIIILDEADA 138
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT AQ+ALRRTME YS VTRF ICNYISR
Sbjct: 139 MTAAAQSALRRTMEKYSNVTRFCLICNYISR 169
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/191 (59%), Positives = 136/191 (71%), Gaps = 3/191 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q S PWVEKYRPK +++VA QEEVV VL T+E A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 29 QKSVPWVEKYRPKCMEEVAFQEEVVAVLKKTIEGADLPNLLFYGPPGTGKTSTILAAARE 88
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPELY+ RVLELNASD+RGI VVR K+K FA + V +G R G PCPP+KIIILDEAD
Sbjct: 89 LYGPELYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGHRTDGKPCPPFKIIILDEAD 147
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEY 225
SMT AQ ALRRTME S+ TRF ICNYISR L S F F L +Q+ ++
Sbjct: 148 SMTNAAQAALRRTMEKESRTTRFCLICNYISR-IIEPLTSRCSKFRFKPLANQVQ-EERL 205
Query: 226 IRIIYASTLKF 236
+ I LK+
Sbjct: 206 LDICDKENLKY 216
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 130/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
RK PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 RKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 138/196 (70%), Gaps = 10/196 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 34 QPWVEKYRPKTLSDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + + YPCPP+KIIILDEADS
Sbjct: 94 PELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKARYPCPPFKIIILDEADS 153
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYI 226
MT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F S LDQ + +
Sbjct: 154 MTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKS-LDQGNARRRLE 211
Query: 227 RIIYASTLKFLEGFGL 242
I LEG G+
Sbjct: 212 EIAR------LEGVGM 221
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVE+YRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVERYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSSVTRFCLICNYVTR 175
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 143/222 (64%), Gaps = 16/222 (7%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
S+ Q + E +E++ + QPWVEKYRPK + DVA Q+ VL TL+ +N P
Sbjct: 23 SSKQKTSENAEEQARL---------QPWVEKYRPKSLDDVAAQDHTTAVLQRTLQASNLP 73
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
HMLFYGPPGTGKT+T LA++ LFGP LY++R+LELNASD+RGIN+VR KIK FA +
Sbjct: 74 HMLFYGPPGTGKTSTILALSKSLFGPALYRTRILELNASDERGINIVREKIKDFARTQLS 133
Query: 144 -----SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 134 HPSGLDAAYKAKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRI 193
Query: 199 TFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGF 240
L S F F + LD +S I A L +G
Sbjct: 194 -IEPLASRCSKFRFKA-LDGVSAGDRINEIAQAEGLTLDDGV 233
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++QPWVEKYRPK + DV Q+ V VL L+T+N PHMLFYGPPGTGKT+T LA+ +
Sbjct: 16 NNTQPWVEKYRPKSLDDVYSQDHTVSVLKKNLQTSNLPHMLFYGPPGTGKTSTILAMTKE 75
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDE 163
L+GP L SR+LELNASD+RGIN+VR KIK FA + + S YPCPPYKIIILDE
Sbjct: 76 LYGPNLINSRILELNASDERGINIVRKKIKNFAKLIISKPSKDDLEKYPCPPYKIIILDE 135
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT DAQ+ALRRTME YS +TRF ICNY++R
Sbjct: 136 ADSMTSDAQSALRRTMEKYSNITRFCLICNYVTR 169
>gi|331215451|ref|XP_003320406.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299396|gb|EFP75987.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 382
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/166 (62%), Positives = 123/166 (74%), Gaps = 9/166 (5%)
Query: 39 RKMAPVLQSSQ-------PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
+K AP SS PW+EKYRPK ++ V QE ++L+ L A+ PHMLFYGPP
Sbjct: 14 KKNAPTADSSSSQPPAALPWIEKYRPKSIESVQGQEGTTKILSKALNRADLPHMLFYGPP 73
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
GTGKT+T LA+A LFGPEL KSRVLELNASD+RGI+VVR KIK FA V++ GY
Sbjct: 74 GTGKTSTILALARDLFGPELMKSRVLELNASDERGISVVREKIKNFAKVSISPAT--SGY 131
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
PCP YKIIILDEADSMT+DAQ+ALRR ME YSK+TRF ICNY++R
Sbjct: 132 PCPAYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTR 177
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 136/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 IS-------FDKEYIRI 228
I KE+++I
Sbjct: 206 IQQQRLLDIAGKEHVKI 222
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/168 (62%), Positives = 128/168 (76%), Gaps = 3/168 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +V+ Q+ V++L LETAN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 22 PWVEKYRPKNLDEVSSQKTTVQILKKNLETANLPHMLFYGPPGTGKTSTILAMAKQLYGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L+K+RVLELNASD+RGI++VR +IK FA + V + + YPCPPYK+IILDEADSM
Sbjct: 82 RLFKTRVLELNASDERGISIVRERIKGFARLTVSRPXQEDKANYPCPPYKMIILDEADSM 141
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
T DAQ+ALRRTMETYS +TRF ICNY++R L S F F SL
Sbjct: 142 TGDAQSALRRTMETYSGITRFCLICNYVTR-IIDPLASRCSKFRFKSL 188
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 123/154 (79%), Gaps = 7/154 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ ALRR METY+++TRF +CNY++R
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTR 176
>gi|393220481|gb|EJD05967.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 370
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/214 (56%), Positives = 144/214 (67%), Gaps = 19/214 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE +V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDVSSQEHIVAVLQKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 82 PDNFKNRVLELNASDERGITIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLD------ 217
ADSMT DAQ+ALRR METY+++TRF +CNY++R L S F F L D
Sbjct: 140 ADSMTHDAQSALRRIMETYARITRFCLVCNYVTR-IIEPLASRCSKFRFRPLDDSATKLR 198
Query: 218 -QISFDKEYIRII--YASTLKFLEGFGL--SLTY 246
Q D E + +I STL + G L S+TY
Sbjct: 199 LQHIADAERVPVIPEVVSTLINVSGGDLRRSITY 232
>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 394
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 122/154 (79%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A L+G
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-----VGSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 188
>gi|389749254|gb|EIM90431.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 379
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 134/184 (72%), Gaps = 9/184 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE +V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHIVAVLEKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFRSRVLELNASDERGIAIVREKIKNFARQTPRAQAVSSDGK--AYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
ADSMT+DAQ ALRR METY+ +TRF +CNY++R L S F F L D S ++
Sbjct: 143 ADSMTQDAQAALRRIMETYAHITRFCLVCNYVTR-IIEPLASRCSKFRFKPLDDSSSTNR 201
Query: 224 -EYI 226
E+I
Sbjct: 202 LEHI 205
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 137/203 (67%), Gaps = 10/203 (4%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RCTFSALFSFLLFFMFFSLLDQI 219
R L S F F L D+I
Sbjct: 185 R-IIEPLTSRCSKFRFKPLSDKI 206
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 131/181 (72%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 137/203 (67%), Gaps = 10/203 (4%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RCTFSALFSFLLFFMFFSLLDQI 219
R L S F F L D+I
Sbjct: 185 R-IIEPLTSRCSKFSFKPLSDKI 206
>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143]
gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
Length = 394
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 122/154 (79%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A L+G
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-----VGSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 188
>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349579253|dbj|GAA24416.1| K7_Rfc2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764724|gb|EHN06245.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/170 (61%), Positives = 130/170 (76%), Gaps = 3/170 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 31 AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELY 90
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + + YP PP+KIIILDEAD
Sbjct: 91 GPEMMKSRVLELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPPFKIIILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
SMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S F F SL
Sbjct: 151 SMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLASRCSKFRFKSL 199
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/154 (66%), Positives = 123/154 (79%), Gaps = 7/154 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE + VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ ALRR METY+++TRF +CNY++R
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTR 176
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 137/203 (67%), Gaps = 10/203 (4%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RCTFSALFSFLLFFMFFSLLDQI 219
R L S F F L D+I
Sbjct: 185 R-IIEPLTSRCSKFRFKPLSDKI 206
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 130/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 130/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 136/192 (70%), Gaps = 11/192 (5%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
T S +K +E R +QPWVEKYRPK + DV Q+ V VL TL+ +N PHM
Sbjct: 18 TASKNDKQTNETSR--------AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHM 69
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LFYGPPGTGKT+T LA+A +L+GPE KSRVLELNASD+RGI++VR K+K FA + + +
Sbjct: 70 LFYGPPGTGKTSTILALAKELYGPEFVKSRVLELNASDERGISIVREKVKDFARMQLTNP 129
Query: 146 QR--RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSAL 203
R YPCPP+K+I+LDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L
Sbjct: 130 PPGYRDRYPCPPFKLIVLDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPL 188
Query: 204 FSFLLFFMFFSL 215
S F F SL
Sbjct: 189 ASRCSKFRFKSL 200
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 130/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKIFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 130/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 130/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/154 (66%), Positives = 122/154 (79%), Gaps = 7/154 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 147 QPWVEKYRPKTIDDVSSQENTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFG 206
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAA-----VAVGSGQRRGGYPCPPYKIIILDE 163
P+L++SRVLELNASD+RGI VVR KIKTFA V++ S + YPCPP+K+IILDE
Sbjct: 207 PDLFRSRVLELNASDERGITVVREKIKTFARETPRHVSLSSDGK--TYPCPPFKLIILDE 264
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT DAQ+ALRR METYS++TRF +CNY++R
Sbjct: 265 ADSMTHDAQSALRRIMETYSRITRFCLVCNYVTR 298
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 119/150 (79%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V VL +L +AN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 21 PWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+L KSRVLELNASD+RGI +VR K+K FA + V S + YPCPPYK+IILDEADSM
Sbjct: 81 DLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSM 140
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ ALRRTMETYS VTRF ICNYI+R
Sbjct: 141 TYDAQAALRRTMETYSGVTRFCLICNYITR 170
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/197 (58%), Positives = 136/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 63 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 117
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 118 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 176
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 177 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 235
Query: 219 IS-------FDKEYIRI 228
I KE+++I
Sbjct: 236 IQQQRLLDIAGKEHVKI 252
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 130/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/153 (66%), Positives = 120/153 (78%), Gaps = 4/153 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA----VGSGQRRGGYPCPPYKIIILDEA 164
P+L+KSRVLELNASD+RGI+VVR KIKTFA G YPCPPYK+IILDEA
Sbjct: 78 PDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEA 137
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT+DAQ+ALRR METYS++TRF +CNY++R
Sbjct: 138 DSMTQDAQSALRRIMETYSRITRFCLVCNYVTR 170
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 130/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVSVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/154 (65%), Positives = 122/154 (79%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRG---GYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA V + +G + YPCPP+KIIILDE
Sbjct: 96 PALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKSYFEKYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTMETYSK+TRF +CNY++R
Sbjct: 156 ADSMTQDAQSALRRTMETYSKITRFCLVCNYVTR 189
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 119/150 (79%), Gaps = 2/150 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V VL +L +AN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 21 PWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+L KSRVLELNASD+RGI +VR K+K FA + V S + YPCPPYK+IILDEADSM
Sbjct: 81 DLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSM 140
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ ALRRTMETYS VTRF ICNYI+R
Sbjct: 141 TYDAQAALRRTMETYSGVTRFCLICNYITR 170
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 102/153 (66%), Positives = 120/153 (78%), Gaps = 4/153 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA----VGSGQRRGGYPCPPYKIIILDEA 164
P+L+KSRVLELNASD+RGI+VVR KIKTFA G YPCPPYK+IILDEA
Sbjct: 78 PDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEA 137
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT+DAQ+ALRR METYS++TRF +CNY++R
Sbjct: 138 DSMTQDAQSALRRIMETYSRITRFCLVCNYVTR 170
>gi|349605347|gb|AEQ00618.1| Replication factor C subunit 4-like protein, partial [Equus
caballus]
Length = 266
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 136/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 5 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 59
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 60 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 118
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISR L S F F L D+
Sbjct: 119 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISR-IIEPLTSRCSKFRFKPLSDK 177
Query: 219 IS-------FDKEYIRI 228
I KE+++I
Sbjct: 178 IQQQRLLDIAGKEHVKI 194
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/150 (66%), Positives = 120/150 (80%), Gaps = 2/150 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
SQPWVE+YRPK + +VA Q+ V VL L +AN PHMLFYGPPGTGKT+T LA+A QL+
Sbjct: 6 SQPWVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQLY 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GPEL +SRVLELNASD+RGI+VVR KIK+FA AV + YP PPYKI+ILDEADSM
Sbjct: 66 GPELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPN--PDYPSPPYKIVILDEADSM 123
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T+DAQ ALRR ME YS++TRF +CNY++R
Sbjct: 124 TQDAQGALRRIMEQYSRITRFCLVCNYVTR 153
>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
Length = 389
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 121/154 (78%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 35 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQR-RGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 95 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 155 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 188
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 114/197 (57%), Positives = 136/197 (69%), Gaps = 14/197 (7%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KKQKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 86
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA + +L+GPEL++ RVLELNASD+RGI VVR K+K FA + VG G R G PCPP+KI
Sbjct: 87 ILAASRELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVG-GTRSDGKPCPPFKI 145
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLADK 204
Query: 219 IS-------FDKEYIRI 228
I +KE ++I
Sbjct: 205 IQTQRLLSICEKENVKI 221
>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>gi|407929691|gb|EKG22503.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 342
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 139/204 (68%), Gaps = 9/204 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + QPWVEKYRPK + DV Q+ V VL+ TL+++N PHMLFYGPPGTGKT+T LA+
Sbjct: 27 PETSALQPWVEKYRPKSLSDVNGQDHTVTVLSRTLQSSNLPHMLFYGPPGTGKTSTILAL 86
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-------AVAVGSGQRRGGYPCPP 155
A QL+GPEL ++RVLELNASD+RGI +VR K+K FA + + YPCPP
Sbjct: 87 AKQLYGPELLRTRVLELNASDERGIGIVREKVKNFARQQLSNPPAGPAGVEYKKRYPCPP 146
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
+KIIILDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++R L S F F S
Sbjct: 147 FKIIILDEADSMTQDAQSALRRTMETYSRITRFCLVCNYVTR-IIDPLASRCSKFRFKS- 204
Query: 216 LDQISFDKEYIRIIYASTLKFLEG 239
LD S + I A ++ EG
Sbjct: 205 LDTGSAARRLEEIAAAEGVRLGEG 228
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 103/159 (64%), Positives = 124/159 (77%), Gaps = 4/159 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
RK ++ PWVEKYRP+ V +VA Q+EVV VL +L + + PH+LFYGPPGTGKT+T
Sbjct: 13 RKRETATSTTTPWVEKYRPRTVDEVAFQDEVVAVLKKSLTSNDFPHLLFYGPPGTGKTST 72
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LAIA Q+FGPEL K+R+LELNASD+RGI+VVR K+KT S + + GYPCPP+KI
Sbjct: 73 ILAIARQMFGPELMKTRILELNASDERGISVVREKVKTLHQ----SLRLKWGYPCPPFKI 128
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
IILDEADSMT DAQ+ALRR METYSK TRF ICNY+SR
Sbjct: 129 IILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSR 167
>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
WM276]
gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
[Cryptococcus gattii WM276]
Length = 363
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/166 (62%), Positives = 128/166 (77%), Gaps = 9/166 (5%)
Query: 39 RKMAPVLQSS-QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
R +AP+ QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+
Sbjct: 7 RSVAPIKDPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTS 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGY 151
T LA+A QLFGP+L+++RVLELNASD+RGI+VVR KIK+FA A V S + Y
Sbjct: 67 TILALARQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHASGVSSDGKE--Y 124
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
PCPP+K+IILDEADSMT+DAQ+ALRR METYSK+TRF +CNY++R
Sbjct: 125 PCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTR 170
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/185 (60%), Positives = 133/185 (71%), Gaps = 7/185 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 ISFDK 223
I ++
Sbjct: 206 IQQER 210
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/195 (56%), Positives = 138/195 (70%), Gaps = 12/195 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIDEVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +++RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQAVASDGK--SYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
ADSMT+DAQ ALRR METY+++TRF +CNY++R L S F F L + SF
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRI-IEPLASRCSKFRFTPLDSKSSFS- 200
Query: 224 EYIRIIYASTLKFLE 238
R+ Y +T + ++
Sbjct: 201 ---RLSYIATAEHID 212
>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 363
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 124/155 (80%), Gaps = 8/155 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGYPCPPYKIIILD 162
P+L+++RVLELNASD+RGI+VVR KIK+FA A AV S + YPCPP+K+IILD
Sbjct: 78 PDLFRARVLELNASDERGISVVREKIKSFARETPRHAPAVSSDGKE--YPCPPFKLIILD 135
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EADSMT+DAQ+ALRR METYSK+TRF +CNY++R
Sbjct: 136 EADSMTQDAQSALRRIMETYSKITRFCLVCNYVTR 170
>gi|451849989|gb|EMD63292.1| hypothetical protein COCSADRAFT_38154 [Cochliobolus sativus ND90Pr]
Length = 416
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ ++VL+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------------AVAVGSGQRRGG------ 150
PEL KSRVLELNASD+RGI++VR K+K FA V SG GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEGGMVRYRD 152
Query: 151 -YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLF 209
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++R L S
Sbjct: 153 KYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRI-IDPLASRCSK 211
Query: 210 FMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244
F F S LDQ + K I ++ +G L
Sbjct: 212 FRFKS-LDQGNAVKRVSDIAALENVRLDDGVAEEL 245
>gi|358367795|dbj|GAA84413.1| DNA replication factor C subunit Rfc2 [Aspergillus kawachii IFO
4308]
Length = 389
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 120/154 (77%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 35 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + S + YPCPP+KIIILDE
Sbjct: 95 PSLYRSRILELNASDERGIGIVRDKIKNFARAQLTHSTGLSEEYLAQYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 155 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 188
>gi|405124075|gb|AFR98837.1| activator 1 41 kda subunit [Cryptococcus neoformans var. grubii
H99]
Length = 363
Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/166 (62%), Positives = 128/166 (77%), Gaps = 9/166 (5%)
Query: 39 RKMAPVLQSS-QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
R+ AP+ QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+
Sbjct: 7 RQAAPIKDPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTS 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGY 151
T LA+A QLFGP+L+++RVLELNASD+RGI+VVR KIK+FA A + S + Y
Sbjct: 67 TILALARQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHAPGISSDGKE--Y 124
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
PCPP+K+IILDEADSMT+DAQ+ALRR METYSK+TRF +CNY++R
Sbjct: 125 PCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTR 170
>gi|390594192|gb|EIN03605.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 364
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 123/155 (79%), Gaps = 7/155 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLF
Sbjct: 26 NQPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLF 85
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILD 162
GP+ ++SRVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILD
Sbjct: 86 GPDNFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSSDGK--TYPCPPYKIIILD 143
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EADSMT+DAQ ALRR ME Y+++TRF +CNY++R
Sbjct: 144 EADSMTQDAQAALRRIMENYARITRFCLVCNYVTR 178
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 137/203 (67%), Gaps = 10/203 (4%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RCTFSALFSFLLFFMFFSLLDQI 219
R L S F F L D+I
Sbjct: 185 R-IIEPLTSRCSKFRFKPLSDKI 206
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 120/154 (77%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 34 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA V + + YPCPP+KIIILDE
Sbjct: 94 PALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDE 153
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 154 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 187
>gi|392595637|gb|EIW84960.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 369
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/165 (63%), Positives = 126/165 (76%), Gaps = 10/165 (6%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K + P LQ PWVEKYRPK + +V+ QE V VL TL + N PHMLFYGPPGTGKT+
Sbjct: 12 KHTVEPALQ---PWVEKYRPKTIDEVSAQEHAVAVLRKTLFSTNLPHMLFYGPPGTGKTS 68
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYP 152
T LA+A QLFGP+ +++RVLELNASDDRGI++VR KIK FA A AV S + YP
Sbjct: 69 TILALARQLFGPDNFRNRVLELNASDDRGISIVREKIKNFARQTPRAQAVASDGK--TYP 126
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
CPPYKIIILDEADSMT+DAQ ALRR METY+++TRF +CNY++R
Sbjct: 127 CPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTR 171
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/223 (53%), Positives = 140/223 (62%), Gaps = 16/223 (7%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
TT P+ E K Q PWVEK+RP+ V DVA+Q+EVV VL +LE ++ P+
Sbjct: 12 TTSKDPKSLEAAGSGKGGKSKQKHVPWVEKFRPRSVDDVAYQDEVVAVLKKSLEGSDLPN 71
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+LFYGPPGTGKT+T LA A LFG E+ K RVLELNASD+RGINVVR K+K FA S
Sbjct: 72 LLFYGPPGTGKTSTILAAARSLFGAEMMKLRVLELNASDERGINVVREKVKKFAQT-TAS 130
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALF 204
G R G PCPP+KIIILDEADSMT AQ ALRRTME SK TRF ICNY+SR +
Sbjct: 131 GTRPDGKPCPPFKIIILDEADSMTSPAQAALRRTMEKESKSTRFCLICNYVSR-IIEPIA 189
Query: 205 SFLLFFMFFSLLDQ--------------ISFDKEYIRIIYAST 233
S F F L DQ IS+DKE I+ + S+
Sbjct: 190 SRCAKFRFKPLADQILTERLQGICEAEKISYDKESIKALIDSS 232
>gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 121/154 (78%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE + VL TL+ +N PHMLFYGPPGTGKT+T LA++ LFG
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-----VGSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + V YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 188
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/186 (59%), Positives = 131/186 (70%), Gaps = 9/186 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+ILDEADSMT
Sbjct: 97 ELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRSDGKVCPPFKIVILDEADSMTS 155
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS-------FD 222
AQ ALRRTME SK TRF ICNYISR L S F F L D+I +
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISR-IIEPLTSRCSKFRFKPLSDKIQQQRLLDVAE 214
Query: 223 KEYIRI 228
KE+++I
Sbjct: 215 KEHVKI 220
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/180 (61%), Positives = 128/180 (71%), Gaps = 7/180 (3%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+
Sbjct: 87 LAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRADGKVCPPFKIV 145
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
ILDEADSMT AQ ALRRTME SK TRF ICNYISR L S F F L D+I
Sbjct: 146 ILDEADSMTSAAQGALRRTMEKESKTTRFCLICNYISR-IIEPLTSRCSKFRFKPLSDKI 204
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 143/215 (66%), Gaps = 3/215 (1%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K +T Q++ + + V A + PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGATVQAARPQKDKAVVGPSAEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GPELY+ RVLELNASD+RGI VVR K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRDKVKNFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNYISR
Sbjct: 126 V-AGTRPDGKSCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR-IIE 183
Query: 202 ALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKF 236
L S F F L +QI ++ + I LK+
Sbjct: 184 PLTSRCSKFRFKPLANQIQ-EERLLEICEKENLKY 217
>gi|396471841|ref|XP_003838965.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
gi|312215534|emb|CBX95486.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
Length = 434
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 135/196 (68%), Gaps = 30/196 (15%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV------------------------AVGS 144
P+L KSRVLELNASD+RGI++VR K+K FA A G+
Sbjct: 93 PDLLKSRVLELNASDERGISIVRQKVKDFARQQLSLAPSYSVMVEDKAAAGRGEDEAAGT 152
Query: 145 GQR-----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
G++ R YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS+VTRF +CNY++R
Sbjct: 153 GEKKMARYRDVYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRVTRFCLVCNYVTRI- 211
Query: 200 FSALFSFLLFFMFFSL 215
L S F F SL
Sbjct: 212 IDPLASRCSKFRFKSL 227
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 126/170 (74%), Gaps = 2/170 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA + +L+GP
Sbjct: 38 PWVEKYRPKCVDEVAFQDEVVAVLKKSLQGADLPNLLFYGPPGTGKTSTILAASRELYGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + VG G R G PCPP+KIIILDEADSMT
Sbjct: 98 ELFRQRVLELNASDERGIQVVREKVKNFAQLTVG-GTRSDGKPCPPFKIIILDEADSMTS 156
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
AQ ALRRTME SK TRF ICNY+SR L S F F L D+I
Sbjct: 157 AAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLADKI 205
>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
Length = 370
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/181 (61%), Positives = 131/181 (72%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/187 (59%), Positives = 133/187 (71%), Gaps = 3/187 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 34 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LY+ RVLELNASD+RGI V+R K+KTFA + V +G R G PCPP+KIIILDEADSMT
Sbjct: 94 VLYRQRVLELNASDERGIQVIREKVKTFAQLTV-AGTRPDGKPCPPFKIIILDEADSMTP 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME S+ TRF ICNYISR L S F F L +Q+ ++ + I
Sbjct: 153 PAQAALRRTMEKESRTTRFCLICNYISR-IIEPLTSRCSKFRFKPLDNQVQ-EERLLAIC 210
Query: 230 YASTLKF 236
LK+
Sbjct: 211 EKENLKY 217
>gi|225680958|gb|EEH19242.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
Length = 374
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 121/154 (78%), Gaps = 5/154 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE + VL TL+ +N PHMLFYGPPGTGKT+T LA++ LFG
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + V YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 188
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 133/199 (66%), Gaps = 11/199 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 37 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 96
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR K+K FA + Q G YPCPP+KIIIL
Sbjct: 97 PALYRSRILELNASDERGIGIVREKVKGFARTQL--SQPTGLDSSYFEQYPCPPFKIIIL 154
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISF 221
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++R L S F F LD +
Sbjct: 155 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR-VIEPLASRCSKFR-FKPLDNSAA 212
Query: 222 DKEYIRIIYASTLKFLEGF 240
+ I LK EG
Sbjct: 213 AERLAHIARLENLKLDEGV 231
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 9/156 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR KIK FA + Q G YPCPP+KIIIL
Sbjct: 96 PALYRSRILELNASDERGIGIVREKIKGFARTQL--SQPTGLDSSYFEQYPCPPFKIIIL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 154 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 189
>gi|444509952|gb|ELV09445.1| Replication factor C subunit 4 [Tupaia chinensis]
Length = 322
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/181 (61%), Positives = 129/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G CPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKACPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 I 219
I
Sbjct: 206 I 206
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/165 (63%), Positives = 123/165 (74%), Gaps = 10/165 (6%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K + P LQ PWVEKYRPK + DV+ QE V VL TL + N PHMLFYGPPGTGKT+
Sbjct: 14 KHTIDPALQ---PWVEKYRPKTIDDVSAQEHTVAVLRRTLTSTNLPHMLFYGPPGTGKTS 70
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYP 152
T LA+A QLFGP+ ++SRVLELNASD+RGI++VR KIK FA A A S + YP
Sbjct: 71 TILALARQLFGPDNFRSRVLELNASDERGISIVREKIKDFARQTPRAQAASSDDK--TYP 128
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
CPPYKIIILDEADSMT+DAQ ALRR ME Y ++TRF +CNY++R
Sbjct: 129 CPPYKIIILDEADSMTQDAQAALRRIMENYVRITRFCLVCNYVTR 173
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/154 (66%), Positives = 121/154 (78%), Gaps = 7/154 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 24 QPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 83
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
PE ++SRVLELNASD+RGI++VR KIK FA A AV + YPCPPYKIIILDE
Sbjct: 84 PENFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADG--TVYPCPPYKIIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ ALRR ME Y+++TRF +CNY++R
Sbjct: 142 ADSMTQDAQAALRRIMELYARITRFCLVCNYVTR 175
>gi|403416153|emb|CCM02853.1| predicted protein [Fibroporia radiculosa]
Length = 371
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 121/154 (78%), Gaps = 7/154 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + D++ QE V VL TL + N PHMLFYGPPG+GKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDISAQEHTVAVLRRTLTSTNLPHMLFYGPPGSGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 82 PDNFRSRVLELNASDERGIAIVRDKIKNFARQTPRAQAVSSDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ ALRR METY+++TRF +CNY++R
Sbjct: 140 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTR 173
>gi|452001809|gb|EMD94268.1| hypothetical protein COCHEDRAFT_1028190 [Cochliobolus
heterostrophus C5]
Length = 1071
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ ++VL+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 687 QPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 746
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------------AVAVGSGQRRGG------ 150
PEL KSRVLELNASD+RGI++VR K+K FA V SG GG
Sbjct: 747 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEGGMVRYRD 806
Query: 151 -YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLF 209
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++R L S
Sbjct: 807 KYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTR-IIDPLASRCSK 865
Query: 210 FMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244
F F S LDQ + K I ++ +G L
Sbjct: 866 FRFKS-LDQGNAVKRVSDIAALENVRLDDGVAEEL 899
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 133/199 (66%), Gaps = 11/199 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 39 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 98
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR K+K FA + Q G YPCPP+KIIIL
Sbjct: 99 PALYRSRILELNASDERGIGIVREKVKGFARTQL--SQPTGLDSSYFEQYPCPPFKIIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISF 221
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++R L S F F LD +
Sbjct: 157 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRI-IEPLASRCSKFR-FKPLDNSAA 214
Query: 222 DKEYIRIIYASTLKFLEGF 240
+ I LK EG
Sbjct: 215 AERLAHIARLENLKLDEGV 233
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 126/172 (73%), Gaps = 3/172 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK++ DV+ Q+ + VL TL +AN PHMLFYGPPGTGKT+T A+ +
Sbjct: 20 EHTKPWVEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
L+GPEL K+RVLELNASD+RGI +VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LYGPELSKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
ADSMT DAQ+ALRRTME +S VTRF ICNY++R L S F F SL
Sbjct: 140 ADSMTADAQSALRRTMENHSNVTRFCLICNYVTRI-IDPLASRCSKFRFKSL 190
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/177 (59%), Positives = 127/177 (71%), Gaps = 7/177 (3%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
F+ +Q + + + + AP PWVEKYRPK + DV+ Q+ V VL TL +AN
Sbjct: 5 FAKSQQAQKADGKKTSKNKAP-----PPWVEKYRPKSLDDVSSQDHAVTVLKRTLGSANL 59
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+A +L+GPEL K RVLELNASD+RGI +VR IK FAA V
Sbjct: 60 PHMLFYGPPGTGKTSTVLALAKELYGPELMKDRVLELNASDERGIAIVRDSIKNFAAQKV 119
Query: 143 GSGQRRGG--YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ + YPCPP+KIIILDEADSMT DAQ+ALRRTMETYS TRF ICNY++R
Sbjct: 120 VAPKDHIAEKYPCPPFKIIILDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTR 176
>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 127/167 (76%), Gaps = 3/167 (1%)
Query: 33 SEDEVKRKMAPVL--QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
S +VK+ +A L Q S PWVEKYRPK V DVA QEEVV VL +LE A+ P++LFYGP
Sbjct: 13 SSSKVKQGVAGSLGKQKSSPWVEKYRPKCVDDVAQQEEVVMVLKKSLEGADLPNLLFYGP 72
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA+A +L+G E+ K RVLELNASD+RGI V+R K+KTF+ ++ S R G
Sbjct: 73 PGTGKTSTILAVARELYGHEMLKQRVLELNASDERGIQVIRDKVKTFSQLS-ASASRPDG 131
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
PCPP+K++ILDEADSMT AQ ALRRTME +K TRF ICNY+SR
Sbjct: 132 KPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYVSR 178
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/187 (59%), Positives = 133/187 (71%), Gaps = 3/187 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 32 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY+ RVLELNASD+RGI VVR K+KTFA + V +G R G CPP+KIIILDEADSMT
Sbjct: 92 ELYRQRVLELNASDERGIQVVREKVKTFAQLTV-AGTRPDGKLCPPFKIIILDEADSMTA 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME S+ TRF ICNYISR L S F F L ++I ++ + I
Sbjct: 151 PAQAALRRTMEKESRTTRFCLICNYISR-IIEPLTSRCSKFRFKPLANRIQ-EERLLEIC 208
Query: 230 YASTLKF 236
LK+
Sbjct: 209 EKENLKY 215
>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
Length = 376
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 121/154 (78%), Gaps = 7/154 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL L + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 29 QPWVEKYRPKTIDDVSAQEHTVSVLQKALTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 88
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI++VR K+K FA A AV S + YPCPPYKIIILDE
Sbjct: 89 PDNFRSRVLELNASDERGISIVREKVKNFARQTPRAQAVASDGKE--YPCPPYKIIILDE 146
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ ALRR MET++++TRF +CNY++R
Sbjct: 147 ADSMTQDAQGALRRIMETHARITRFCLVCNYVTR 180
>gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
Length = 360
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 107/178 (60%), Positives = 131/178 (73%), Gaps = 10/178 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVE +RPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 11 QPWVETHRPKTIDDVSAQQHTVAVLQKALTSTNLPHMLFYGPPGTGKTSTILALARQLFG 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI++VR KIK FA A V S + YPCPPYKIIILDE
Sbjct: 71 PDNFRSRVLELNASDERGISIVREKIKNFARQTPRAKTVSSDGKE--YPCPPYKIIILDE 128
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS-ALFSFLLFFMFFSLLDQIS 220
ADSMT+DAQ ALRR METY+++TRF +CNY++R S + F+ L F F+ LDQ S
Sbjct: 129 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRQNHSTSCFAMLQF--RFTPLDQTS 184
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 104/170 (61%), Positives = 125/170 (73%), Gaps = 12/170 (7%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
+D K + P LQ PWVEKYRPK ++DV QE V VL TL + N PHMLFYGPPGT
Sbjct: 11 KDAAKHTVDPQLQ---PWVEKYRPKTIEDVTAQEHTVAVLRKTLTSTNLPHMLFYGPPGT 67
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF------AAVAVGSGQR 147
GKT+T LA+A QL+GP+ +++RVLELNASD+RGI +VR KIK F A VA GQ
Sbjct: 68 GKTSTILALARQLYGPDNFRTRVLELNASDERGITIVREKIKDFARQTPRANVASSDGQ- 126
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YPCPPYKIIILDEADSMT+DAQ ALRR ME Y+++TRF +CNY++R
Sbjct: 127 --TYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFCLVCNYVTR 174
>gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
Length = 395
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 109/198 (55%), Positives = 136/198 (68%), Gaps = 9/198 (4%)
Query: 49 QPWVEKY--RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
QPWVEKY RPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA++ L
Sbjct: 36 QPWVEKYFSRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSL 95
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIIL 161
FGP+LY+SR+LELNASD+RGIN+VR K+K FA + + R YPCPP+KIIIL
Sbjct: 96 FGPKLYRSRILELNASDERGINIVRDKVKNFARTQLSHPPPQDSEYRKQYPCPPFKIIIL 155
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISF 221
DEADSMT+DAQ ALRRTME +SK+TRF +CNY++R L S F F + LD +
Sbjct: 156 DEADSMTQDAQAALRRTMERFSKITRFCLVCNYVTRI-IDPLASRCSKFRFKT-LDGSAA 213
Query: 222 DKEYIRIIYASTLKFLEG 239
I+ A L+ +G
Sbjct: 214 GGRLEEIVKAEKLRVDDG 231
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 124/170 (72%), Gaps = 2/170 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+ILDEADSMT
Sbjct: 97 ELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRADGEVCPPFKIVILDEADSMTS 155
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
AQ ALRRTME SK TRF ICNYISR L S F F L D+I
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISR-IIEPLTSRCSKFRFKPLSDKI 204
>gi|190360157|sp|P0C7N7.1|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2
Length = 411
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 106/185 (57%), Positives = 135/185 (72%), Gaps = 19/185 (10%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG---------- 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFF 210
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++R L S F
Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRI-IDPLASRCSKF 211
Query: 211 MFFSL 215
F SL
Sbjct: 212 RFKSL 216
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 98/148 (66%), Positives = 121/148 (81%), Gaps = 1/148 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVE++RP + VAHQ VV L++ +E+ N PH+LFYGPPGTGKT+T LA+A L+GP
Sbjct: 3 PWVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLYGP 62
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELYKSRVLELNASD+RGI+VVR KIK FA++AV S + YPCPP+K++ILDEAD MT
Sbjct: 63 ELYKSRVLELNASDERGIDVVRNKIKHFASLAV-SSSKSSSYPCPPFKLVILDEADCMTT 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ+ALRRTMET ++VTRF ICNY+SR
Sbjct: 122 DAQSALRRTMETCTRVTRFCIICNYVSR 149
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 124/157 (78%), Gaps = 8/157 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++QPWVEKYRPK + +++ QE VL+ TL +AN PHMLFYGPPGTGKT+T LA+A +L
Sbjct: 27 ANQPWVEKYRPKTINEISAQEHTTSVLSRTLTSANLPHMLFYGPPGTGKTSTILALAREL 86
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTF------AAVAVGSGQRRGGYPCPPYKIII 160
FGP+ +++RVLELNASD+RGI++VR KIK F A AV S + YPCPPYKIII
Sbjct: 87 FGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVSSDGKT--YPCPPYKIII 144
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMT+DAQ ALRR METY+K+TRF +CNY++R
Sbjct: 145 LDEADSMTQDAQGALRRIMETYAKITRFCLVCNYVTR 181
>gi|440640436|gb|ELR10355.1| hypothetical protein GMDG_04737 [Geomyces destructans 20631-21]
Length = 389
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 121/152 (79%), Gaps = 3/152 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHML+YGPPGTGKT+T LA++ L+G
Sbjct: 35 QPWVEKYRPKSLADVTAQDHTITVLQRTLQSSNLPHMLYYGPPGTGKTSTILALSRSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SGQRRGGYPCPPYKIIILDEAD 165
P L+ SRVLELNASD+RGI++VR K+K FA + + G + Y CPPYKIIILDEAD
Sbjct: 95 PALFHSRVLELNASDERGISIVRKKVKDFARMQLSRPPGGNYQEQYLCPPYKIIILDEAD 154
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT+DAQ+ALRRTMETYSK+TRF +CNY++R
Sbjct: 155 SMTQDAQSALRRTMETYSKITRFCLVCNYVTR 186
>gi|336367142|gb|EGN95487.1| hypothetical protein SERLA73DRAFT_60040 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379860|gb|EGO21014.1| hypothetical protein SERLADRAFT_372826 [Serpula lacrymans var.
lacrymans S7.9]
Length = 372
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 121/154 (78%), Gaps = 7/154 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +++RVLELNASD+RGI++VR KIK FA A V S + YPCPPYKIIILDE
Sbjct: 82 PDNFRNRVLELNASDERGISIVREKIKNFARQTPRAQMVASDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ ALRR METY+++TRF +CNY++R
Sbjct: 140 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTR 173
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 129/181 (71%), Gaps = 7/181 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 34 KKAKPV-----PWVEKYRPKSVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 88
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + V SG R G CPP+KI
Sbjct: 89 ILAAARELFGPELFRLRVLELNASDERGIQVIREKVKNFAQLTV-SGSRSDGKLCPPFKI 147
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 148 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 206
Query: 219 I 219
I
Sbjct: 207 I 207
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/186 (58%), Positives = 130/186 (69%), Gaps = 9/186 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+ILDEADSMT
Sbjct: 97 DLFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRSDGKMCPPFKIVILDEADSMTS 155
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS-------FD 222
AQ ALRRTME SK TRF ICNYISR L S F F L D I +
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISR-IIEPLTSRCSKFRFKPLSDSIQQQRLLDVSE 214
Query: 223 KEYIRI 228
KE+++I
Sbjct: 215 KEHVKI 220
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 140/215 (65%), Gaps = 3/215 (1%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K ST P+K + Q PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGSTQGVKPQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GPELY+ RVLELNASD+RGI V+R K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SR
Sbjct: 126 V-AGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSR-IIE 183
Query: 202 ALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKF 236
L S F F L +++ ++ + I LK+
Sbjct: 184 PLTSRCSKFRFKPLTNEVQQER-LLEICAKENLKY 217
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 140/215 (65%), Gaps = 3/215 (1%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K ST P+K + Q PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGSTQGVKPQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GPELY+ RVLELNASD+RGI V+R K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SR
Sbjct: 126 V-AGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSR-IIE 183
Query: 202 ALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKF 236
L S F F L +++ ++ + I LK+
Sbjct: 184 PLTSRCSKFRFKPLTNEVQQER-LLEICAKENLKY 217
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/152 (67%), Positives = 120/152 (78%), Gaps = 1/152 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP+ V +VA+Q+EVV VL +L+ A+ P+MLFYGPPGTGKT+T LA + +
Sbjct: 25 QRQVPWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRE 84
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++Y+SRVLELNASD+RGI VVR K+K FA A G G R G PCPP+KIIILDEAD
Sbjct: 85 LFGTDMYRSRVLELNASDERGIQVVRDKVKKFAQTAAG-GIRPDGKPCPPFKIIILDEAD 143
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT DAQ ALRRTME SK T+F ICNYISR
Sbjct: 144 SMTYDAQAALRRTMEKQSKNTKFCLICNYISR 175
>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
Length = 418
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 19/185 (10%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVAVG---------SGQR-----RGG 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA SG+ R
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGEAKTVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFF 210
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++R L S F
Sbjct: 153 YPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRI-IDPLASRCSKF 211
Query: 211 MFFSL 215
F SL
Sbjct: 212 RFKSL 216
>gi|171680165|ref|XP_001905028.1| hypothetical protein [Podospora anserina S mat+]
gi|170939709|emb|CAP64935.1| unnamed protein product [Podospora anserina S mat+]
Length = 405
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 137/214 (64%), Gaps = 25/214 (11%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC--------------------PHMLFY 88
QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 34 QPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNVCSPPSPPSSFPTNMTLSPQLPHMLFY 93
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSG 145
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + V S
Sbjct: 94 GPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNVSSA 153
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFS 205
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R L S
Sbjct: 154 AYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI-IDPLAS 212
Query: 206 FLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEG 239
F F S LDQ + K I + EG
Sbjct: 213 RCSKFRFKS-LDQGNAKKRLEEIAEKEKVGLDEG 245
>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 417
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 19/185 (10%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVAVG---------SGQR-----RGG 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA SG+ R
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGETKTVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFF 210
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++R L S F
Sbjct: 153 YPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRI-IDPLASRCSKF 211
Query: 211 MFFSL 215
F SL
Sbjct: 212 RFKSL 216
>gi|427779307|gb|JAA55105.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 392
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/193 (58%), Positives = 134/193 (69%), Gaps = 18/193 (9%)
Query: 8 IHKSGKNKSPNFT---QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA 64
+ K K +PN +K T+ P+K PV PWVEKYRPK V DVA
Sbjct: 35 VEKXLKTANPNLILPKEKTKETKQVPKK----------PV---QIPWVEKYRPKTVDDVA 81
Query: 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
HQ+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA+A +LFG ++YKSR+LELNASD+
Sbjct: 82 HQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFG-DMYKSRILELNASDE 140
Query: 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184
RGI VVR KIKTF+ + SG G PCPPYKI+ILDEADSMT AQ ALRRTME +K
Sbjct: 141 RGIQVVREKIKTFSQL-TASGTGPDGKPCPPYKIVILDEADSMTASAQAALRRTMEKETK 199
Query: 185 VTRFFFICNYISR 197
TRF ICNYISR
Sbjct: 200 TTRFCLICNYISR 212
>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe 972h-]
gi|1350581|sp|Q09843.1|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe]
Length = 340
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/167 (59%), Positives = 128/167 (76%), Gaps = 10/167 (5%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+K+E E K+ S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG
Sbjct: 9 KKTEQEAKK--------SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGS 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + G
Sbjct: 61 PGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDG 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTR 165
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
+ PV + PWVEKYRPK V DV HQ+EVV VL TL ++ P++LFYGPPGTGKT+
Sbjct: 28 QQGPVEKRKVPWVEKYRPKVVDDVVHQDEVVSVLKKTLTGSDFPNLLFYGPPGTGKTSAI 87
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LAIAH+LFG +LYKSR+LELNASDDRGI V+R K+K+FA + S R G PCP +KI+
Sbjct: 88 LAIAHELFGRDLYKSRILELNASDDRGIQVIRDKVKSFARHS-ASASRPDGKPCPSFKIV 146
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEADSMT+ AQ ALRRTME S TRF ICNYISR
Sbjct: 147 ILDEADSMTQAAQAALRRTMEKESTSTRFCLICNYISR 184
>gi|326482375|gb|EGE06385.1| DNA replication factor C subunit Rfc2 [Trichophyton equinum CBS
127.97]
Length = 386
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/156 (62%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEADSMT DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 185
>gi|315042534|ref|XP_003170643.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
gi|311344432|gb|EFR03635.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
Length = 386
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/156 (62%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPPDPAYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEADSMT DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 185
>gi|327292807|ref|XP_003231101.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
gi|326466731|gb|EGD92184.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
Length = 386
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + +L L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISILQRNLNASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPADPVYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEADSMT DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 185
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 109/191 (57%), Positives = 133/191 (69%), Gaps = 3/191 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 30 QRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GP+LY+ RVLELNASD+RGI VVR K+K FA + V +G R G CPP+KIIILDEAD
Sbjct: 90 LYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGTRPDGKTCPPFKIIILDEAD 148
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEY 225
SMT AQ ALRRTME S+ TRF ICNY+SR L S F F L + + ++
Sbjct: 149 SMTSAAQAALRRTMEKESRTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLANDVQQER-I 206
Query: 226 IRIIYASTLKF 236
+ I LK+
Sbjct: 207 LEICRKENLKY 217
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 118/152 (77%), Gaps = 3/152 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S +PWVEKYRP+ ++DVA Q+ +RVL L AN PHMLFYGPPGTGKT+T LA++ Q
Sbjct: 4 ESIKPWVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG +L KSRVLELNASD+RGINVVR KIK FA A + P YKIIILDEAD
Sbjct: 64 LFGQDLVKSRVLELNASDERGINVVREKIKNFAKQAPKAS---TSASVPAYKIIILDEAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT+DAQ+ALRRTMETYSK TRF +CNY++R
Sbjct: 121 SMTQDAQSALRRTMETYSKSTRFCLVCNYVTR 152
>gi|296807688|ref|XP_002844229.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
gi|238843712|gb|EEQ33374.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
Length = 390
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 118/156 (75%), Gaps = 4/156 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DVA Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 31 QQTQPWVEKYRPKTLDDVAAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 90
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGI++VR KIK FA + + R YPCPP+KI+IL
Sbjct: 91 LFGPALVRSRVLELNASDERGISIVREKIKDFARMHLSQPPADPAYRSQYPCPPFKIVIL 150
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEADSMT DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 151 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 186
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/151 (65%), Positives = 119/151 (78%), Gaps = 1/151 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S+PWVEKYRPK V DVAHQ+EVV VL +L A+ P++LFYGPPGTGKT+T LA++ +L
Sbjct: 30 ASKPWVEKYRPKCVDDVAHQDEVVAVLRKSLTGADLPNLLFYGPPGTGKTSTILALSREL 89
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG +L K RVLELN+SD+RGINV+R K+K FA + S R G CPPYKIIILDEADS
Sbjct: 90 FGFQLMKERVLELNSSDERGINVIREKVKNFAQLTANS-LREDGKKCPPYKIIILDEADS 148
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT+ AQ ALRRTME SK TRF ICNY++R
Sbjct: 149 MTKAAQEALRRTMEKSSKTTRFCLICNYVTR 179
>gi|430814613|emb|CCJ28174.1| unnamed protein product [Pneumocystis jirovecii]
Length = 967
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/148 (64%), Positives = 120/148 (81%), Gaps = 3/148 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + VA Q+ + VL +L++ N PH+LFYG PGTGKT+T LA+A++LFG
Sbjct: 21 PWVEKYRPQTLDQVAFQDHAISVLKKSLQSMNLPHLLFYGSPGTGKTSTILALANELFGM 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL KSRVLELNASD+RGI+++R K+K FA +AV + + CPPYKIIILDEADSMT+
Sbjct: 81 ELMKSRVLELNASDERGISIIREKVKNFARIAVSNS---SEHSCPPYKIIILDEADSMTQ 137
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ+ALRRTMETYSK+TRF ICNYI+R
Sbjct: 138 DAQSALRRTMETYSKITRFCLICNYITR 165
>gi|32451662|gb|AAH54598.1| Rfc4 protein [Danio rerio]
Length = 202
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/161 (63%), Positives = 123/161 (76%), Gaps = 1/161 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 30 QRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GP+LY+ RVLELNASD+RGI VVR K+K FA + V +G R G CPP+KIIILDEAD
Sbjct: 90 LYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGTRPDGKTCPPFKIIILDEAD 148
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206
SMT AQ ALRRTME S+ TRF ICNY+SR + + +F
Sbjct: 149 SMTSAAQAALRRTMEKESRTTRFCLICNYVSRLSHAEGAAF 189
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 117/148 (79%), Gaps = 1/148 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 34 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LY+ RVLELNASD+RGI V+R K+KTFA + V +G R G CPP+KIIILDEADSMT
Sbjct: 94 VLYRQRVLELNASDERGIQVIREKVKTFAQLTV-AGTRPDGKLCPPFKIIILDEADSMTP 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME S+ TRF ICNYISR
Sbjct: 153 PAQAALRRTMEKESRTTRFCLICNYISR 180
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 126/173 (72%), Gaps = 2/173 (1%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
PV++ PWVEKYRP +++D+A+QEEVV+ L L+T N PH+L +GPPGTGKT+T +A+
Sbjct: 21 PVVKPMLPWVEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLHGPPGTGKTSTIIAL 80
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QLFGP+ ++ RVLELNASDDRGINVVR K+K FA V G+ CP YKIIILD
Sbjct: 81 AKQLFGPDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNP-NPGFLCPSYKIIILD 139
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
EADSMT DAQ+ALRR +E Y+ TRF ICNYI++ L S + + F S+
Sbjct: 140 EADSMTNDAQSALRRIIEDYATTTRFCIICNYITK-IIEPLVSRCVKYRFKSI 191
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 119/152 (78%), Gaps = 1/152 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP+ V +VA+Q+EVV VL +L+ A+ P+MLFYGPPGTGKT+T LA + +
Sbjct: 25 QRQVPWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRE 84
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++Y+SRVLELNASD+RGI VVR K+K FA A G G R G P PP+KIIILDEAD
Sbjct: 85 LFGADMYRSRVLELNASDERGIQVVRDKVKKFAQTAAG-GIRPDGKPRPPFKIIILDEAD 143
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT DAQ ALRRTME SK T+F ICNYISR
Sbjct: 144 SMTNDAQAALRRTMEKQSKNTKFCLICNYISR 175
>gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii]
Length = 288
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/148 (66%), Positives = 119/148 (80%), Gaps = 1/148 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL ++E ++ P++LFYGPPGTGKT+T LA+A +LFG
Sbjct: 36 PWVEKYRPKSVDEVAFQDEVVAVLKKSIEGSDLPNLLFYGPPGTGKTSTILAVARELFGN 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E++++RVLELNASD+RGINVVR K+K FA ++ S R G PCPPYKIIILDEADSMT
Sbjct: 96 EMFRTRVLELNASDERGINVVREKVKRFAQLS-ASATRSDGKPCPPYKIIILDEADSMTG 154
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME +K TRF ICNY+SR
Sbjct: 155 AAQAALRRTMEKETKTTRFCLICNYVSR 182
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/152 (65%), Positives = 118/152 (77%), Gaps = 1/152 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP+ V DVA QEEVV VL +L+ A+ P++L YGPPGTGKT+T LA A +
Sbjct: 34 QPNAPWVEKYRPRTVDDVAFQEEVVAVLKKSLQGADLPNLLLYGPPGTGKTSTILAAARE 93
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG +L K RVLELNASD+RGI VVR K+KTF+ ++ SG R G PCPP+KI+ILDEAD
Sbjct: 94 LFGADLMKQRVLELNASDERGIQVVRDKVKTFSQLS-ASGTRPDGRPCPPFKIVILDEAD 152
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT AQ +LRRTME +K TRF ICNYISR
Sbjct: 153 SMTNPAQASLRRTMEKETKTTRFCLICNYISR 184
>gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
Length = 340
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 119/148 (80%), Gaps = 2/148 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVE YRPK + +V+ Q+ ++VL T+ + N PHMLFYG PGTGKT+T LA+A +LFGP
Sbjct: 21 PWVEHYRPKSLDEVSSQDMTIQVLKKTMMSNNLPHMLFYGSPGTGKTSTILALARELFGP 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L KSRVLELNASD+RGI+++R K+K FA +AV + GYPCPP+KI+ILDEADSMT+
Sbjct: 81 QLVKSRVLELNASDERGISIIREKVKNFARIAVNNTV--NGYPCPPFKIVILDEADSMTQ 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ ALRRTME +++TRF +CNY++R
Sbjct: 139 DAQAALRRTMEATARITRFCLVCNYVTR 166
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/170 (61%), Positives = 122/170 (71%), Gaps = 2/170 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWV KYRPK V +V+HQ+EVV+ L +LET N PH+LFYGPPGTGKT+T LA+A LFG
Sbjct: 15 EPWVNKYRPKTVDEVSHQDEVVKALKRSLETGNLPHLLFYGPPGTGKTSTILAVAMDLFG 74
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILDEADSM 167
PELYK RVLELNASD+RGI VVRTKIK FA+ +V G P +K+I+LDEADSM
Sbjct: 75 PELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTNGKPAAAFKLIVLDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLD 217
T DAQ ALRR +E SK TRF +CNYI+R L S F F SL D
Sbjct: 135 THDAQAALRRIIEYTSKTTRFCLLCNYITRI-IEPLSSRCAKFRFKSLND 183
>gi|346471367|gb|AEO35528.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 120/151 (79%), Gaps = 8/151 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V DVAHQ+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA+A +LFG
Sbjct: 33 PWVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFG- 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADS 166
++YKSR+LELNASD+RGI VVR KIKTF+ A AVG G PCPP+KI+ILDEADS
Sbjct: 92 DMYKSRILELNASDERGIQVVREKIKTFSQLTAHAVGP----DGKPCPPFKIVILDEADS 147
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT AQ ALRRTME +K TRF ICNYISR
Sbjct: 148 MTASAQAALRRTMEKETKSTRFCLICNYISR 178
>gi|295672510|ref|XP_002796801.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282173|gb|EEH37739.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/185 (56%), Positives = 127/185 (68%), Gaps = 20/185 (10%)
Query: 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKY---------RPKQVKDVAHQEEVVRVLTNTL 77
S P+ SE E QPWVEKY RPK + DVA QE + VL TL
Sbjct: 19 NSKPKASEKEADNTRL------QPWVEKYGIANPGIPSRPKTLDDVASQEHTITVLQRTL 72
Query: 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137
+ +N PHMLFYGPPGTGKT+T LA++ LFGP+LY+SR+LELNASD+RGI++VR KIK F
Sbjct: 73 QASNLPHMLFYGPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDF 132
Query: 138 AAV-----AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
A + V YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +C
Sbjct: 133 ARMQLSHPPVSDTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVC 192
Query: 193 NYISR 197
NY++R
Sbjct: 193 NYVTR 197
>gi|443723218|gb|ELU11749.1| hypothetical protein CAPTEDRAFT_223108 [Capitella teleta]
Length = 343
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRPK V +VA+QEEVV VL +E + P+ML YGPPGTGKT+T LA A LFG
Sbjct: 31 EPWVEKYRPKNVDEVAYQEEVVAVLRKAIEGLDLPNMLLYGPPGTGKTSTILAAAKGLFG 90
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
++Y+SR+LELN+SD+RGI+VVR K+KTF+ ++ G G+R G PCPP+KI+ILDEADSMT
Sbjct: 91 -DMYRSRILELNSSDERGISVVRDKVKTFSQLSAG-GKRPDGKPCPPFKIVILDEADSMT 148
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME SK TRF ICNY+SR
Sbjct: 149 NAAQSALRRTMEKESKTTRFCLICNYVSR 177
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/170 (61%), Positives = 123/170 (72%), Gaps = 2/170 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QEEVV VL L+ A+ P++LFYGPPGTGKT+T LA A +LFG
Sbjct: 40 PWVEKYRPKCMDEVAFQEEVVAVLKKCLQGADLPNLLFYGPPGTGKTSTILAAARELFGT 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI V+R K+K FA + V SG R G CPP+KI+ILDEADSMT
Sbjct: 100 ELFRQRVLELNASDERGIQVIREKVKRFAQLTV-SGSRSDGKLCPPFKIVILDEADSMTS 158
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
AQ ALRRTME SK TRF ICNYISR + S F F L D+I
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYISR-IIEPITSRCSKFRFKPLSDKI 207
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/151 (64%), Positives = 118/151 (78%), Gaps = 2/151 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK V D+ Q EVV VL TL+ A+ P++LFYGPPGTGKT+T LA A QL
Sbjct: 33 SNIPWVEKYRPKTVDDIVEQVEVVSVLRQTLKGADLPNLLFYGPPGTGKTSTILAAARQL 92
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG +++K R+LELNASDDRGI V+R K+KTFA ++ S R G PCPP+KI++LDEADS
Sbjct: 93 FG-DMFKERILELNASDDRGIQVIRDKVKTFAQLS-ASSTRPDGQPCPPFKIVLLDEADS 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT AQ ALRRTME Y+K TRF +CNY+SR
Sbjct: 151 MTSAAQAALRRTMELYTKTTRFCLVCNYVSR 181
>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
Length = 363
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/190 (55%), Positives = 131/190 (68%), Gaps = 11/190 (5%)
Query: 8 IHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQE 67
+H K+ +PN +P E + K P + PWVEKYRPK V DVAHQ+
Sbjct: 1 MHAFLKSANPNL---------APPLKERGKEAKQKPKREVHVPWVEKYRPKTVDDVAHQD 51
Query: 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127
EVV VL +L A+ P++LFYGPPGTGKT+T LA++ +LFG ++YKSR+LELNASD+RGI
Sbjct: 52 EVVSVLKKSLLGADLPNLLFYGPPGTGKTSTILALSRELFG-DMYKSRILELNASDERGI 110
Query: 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187
VVR KIK F+ + + R G PCPP+KI+ILDEADSMT AQ ALRRTME +K TR
Sbjct: 111 QVVREKIKNFSQL-TANATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQTKTTR 169
Query: 188 FFFICNYISR 197
F ICNYISR
Sbjct: 170 FCLICNYISR 179
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 114/152 (75%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT DAQ ALRRT+ET SK TRF +CNYISR
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISR 158
>gi|67525023|ref|XP_660573.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
gi|40744364|gb|EAA63540.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
Length = 754
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/155 (61%), Positives = 116/155 (74%), Gaps = 6/155 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLF 107
QPWVEKYRPK + DVA Q+ + T + A PHMLFYGPPGTGKT+T LA+A LF
Sbjct: 400 QPWVEKYRPKTLDDVAAQDHTTKTWARTNQAALQLPHMLFYGPPGTGKTSTILALAKSLF 459
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILD 162
GP LY+SR+LELNASD+RGI +VR K+K FA V + + YPCPP+KIIILD
Sbjct: 460 GPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILD 519
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 520 EADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 554
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 127/178 (71%), Gaps = 2/178 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V+++AHQ EVV L + T N PH+LFYGPPG GKT+ LA+A +LFGP
Sbjct: 24 PWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALARELFGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI+V+R K+K FA ++V + G PP+KII+LDEADSMT+
Sbjct: 84 ELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIVLDEADSMTK 143
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK-EYI 226
DAQ ALRR +E Y++VTRF ICNY+SR L S F F L D+ + EYI
Sbjct: 144 DAQAALRRIIENYTQVTRFCIICNYVSR-IIEPLQSRCAKFRFEPLSDESQRGRLEYI 200
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 113/152 (74%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWV KYRPK + DV++Q++VV L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 8 ERSEPWVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMD 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI +VRTKIK FA V G +K+IILDEAD
Sbjct: 68 IYGPELIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDEAD 127
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT DAQ ALRRT+ET SK TRF +CNYISR
Sbjct: 128 SMTSDAQAALRRTIETTSKTTRFCLLCNYISR 159
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 98/150 (65%), Positives = 116/150 (77%), Gaps = 2/150 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK V DV Q EVV VL +L TA+ P++L YGPPGTGKT+T LA A QLF
Sbjct: 29 SVPWVEKYRPKNVDDVVEQGEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLF 88
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G +++K R+LELNASDDRGI V+R K+KTFA +A SG R G PCPP+KI+ILDEAD+M
Sbjct: 89 G-DMFKERILELNASDDRGIAVIRNKVKTFAQLA-ASGTRPDGKPCPPFKIVILDEADAM 146
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T AQ ALRRTME +K TRF +CNY+SR
Sbjct: 147 THAAQAALRRTMEKETKTTRFCLVCNYVSR 176
>gi|134057264|emb|CAK96427.1| unnamed protein product [Aspergillus niger]
Length = 388
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 105/197 (53%), Positives = 131/197 (66%), Gaps = 8/197 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPW RPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 35 QPWPHS-RPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQR-RGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 94 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 153
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++R L S F F + LD + +
Sbjct: 154 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRI-IEPLASRCSKFRFKA-LDNTAAGE 211
Query: 224 EYIRIIYASTLKFLEGF 240
I L+ +G
Sbjct: 212 RLEHIAKVENLRLEDGV 228
>gi|326475381|gb|EGD99390.1| DNA replication factor C subunit Rfc2 [Trichophyton tonsurans CBS
112818]
Length = 396
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 117/166 (70%), Gaps = 14/166 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC----------PHMLFYGPPGTGK 95
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGK
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNVKLQYCLFKPLPHMLFYGSPGTGK 89
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGY 151
T+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R Y
Sbjct: 90 TSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQY 149
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
PCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 150 PCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 195
>gi|432099509|gb|ELK28652.1| Replication factor C subunit 4 [Myotis davidii]
Length = 427
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 137/230 (59%), Gaps = 47/230 (20%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 63 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 117
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR---------- 148
LA A +LFG EL++ RVLELNASD+RGI VVR K+K FA + V SG R
Sbjct: 118 ILAAARELFGHELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSECIIQEPQLP 176
Query: 149 -----------------------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185
GG PCPP+KI+ILDEADSMT AQ ALRRTME SK
Sbjct: 177 SHCNLAAPTLSFCPLVIIVRQSYGGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKT 236
Query: 186 TRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS-------FDKEYIRI 228
TRF ICNY+SR L S F F L D+I DKE+++I
Sbjct: 237 TRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKI 285
>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 346
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 116/148 (78%), Gaps = 1/148 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVE+YRPK ++DV+HQ E++ L N +ET PH+LFYGPPGTGKT+ ALA+ QLF P
Sbjct: 16 PWVERYRPKSLQDVSHQGEIISTLKNAVETNRLPHLLFYGPPGTGKTSVALALCRQLFEP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ RVLELNASD+RGI+VVR KIK FA++A+ + + YP PP+KIIILDEAD++T
Sbjct: 76 SQLRRRVLELNASDERGISVVRDKIKHFASLAIDTETTK-KYPNPPFKIIILDEADTVTR 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ ALRR +E YSKVTRF ICNY++R
Sbjct: 135 DAQAALRRVIEAYSKVTRFILICNYVTR 162
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 135/201 (67%), Gaps = 9/201 (4%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K S + + + + V+R+ P PWVEKYRP+ V+DV Q EVV VL +E
Sbjct: 7 TGKSSASTNQDKATAAPVERRKPPA-----PWVEKYRPRSVEDVVEQSEVVAVLKKCVEG 61
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
A+ P+ML YGPPGTGKT+T LA Q+FG ++Y+ R+LELNASD+RGINVVRTKIK FA
Sbjct: 62 ADLPNMLLYGPPGTGKTSTILAAGRQIFG-DMYRDRILELNASDERGINVVRTKIKNFAQ 120
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
++ S R G PCPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SR
Sbjct: 121 LS-ASNVRPDGRPCPPFKIIILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSR-I 178
Query: 200 FSALFSFLLFFMFFSL-LDQI 219
+ S F F SL DQI
Sbjct: 179 IVPITSRCTKFRFKSLGEDQI 199
>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 358
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+ ++ +PWV KYRP+ V DVAHQ+EVVR L +L+ PH+LFYGPPGTGKT+T LAIA
Sbjct: 23 IQKAPEPWVSKYRPRTVDDVAHQDEVVRALKKSLDGGALPHLLFYGPPGTGKTSTILAIA 82
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
L+GP+L K RVLELNASD+RGI +VRTKIK FA+ V + G P +K+IILDE
Sbjct: 83 MDLYGPDLIKDRVLELNASDERGIEIVRTKIKNFASFTV-NNTTVAGKQVPSFKLIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ADSMT+DAQ ALRRT+E SK TRF +CNYI+R
Sbjct: 142 ADSMTQDAQAALRRTIENTSKTTRFCLLCNYITR 175
>gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 388
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 5/147 (3%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115
RPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFGP LY+SR
Sbjct: 37 RPKSLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSR 96
Query: 116 VLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDEADSMTED 170
+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDEADSMT+D
Sbjct: 97 ILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQD 156
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTMETYS++TRF +CNY++R
Sbjct: 157 AQSALRRTMETYSRITRFCLVCNYVTR 183
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 101/167 (60%), Positives = 122/167 (73%), Gaps = 7/167 (4%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
EK + +R+ P L WVEKYRP+ V DV Q EVV VL +E + P+ML YGP
Sbjct: 16 EKQQGASERRKPPTL-----WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGP 70
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA Q+FG ++YK+R+LELNASD+RGINVVRTKIKTF+ +A S R G
Sbjct: 71 PGTGKTSTILAAGRQIFG-DMYKNRILELNASDERGINVVRTKIKTFSQLA-ASSVRPDG 128
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
PCPP+KI+ILDEADSMT AQ+ALRRTME S+ TRF ICNY+SR
Sbjct: 129 RPCPPFKIVILDEADSMTHAAQSALRRTMEKESQSTRFCLICNYVSR 175
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V+DV Q EVV VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG
Sbjct: 32 PWVEKYRPRSVEDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG- 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++Y+ R+LELNASD+RGINVVRTKIK FA + S R G PCPP+KII+LDEADSMT
Sbjct: 91 DMYRDRILELNASDERGINVVRTKIKNFAQL-TASNVRPDGRPCPPFKIIVLDEADSMTH 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME S+ TRF ICNY+SR
Sbjct: 150 AAQAALRRTMEKESRSTRFCLICNYVSR 177
>gi|403270485|ref|XP_003927208.1| PREDICTED: uncharacterized protein LOC101046302 [Saimiri
boliviensis boliviensis]
Length = 766
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 126/180 (70%), Gaps = 9/180 (5%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115
RPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ R
Sbjct: 448 RPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 507
Query: 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
VLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT AQ AL
Sbjct: 508 VLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAAL 566
Query: 176 RRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS-------FDKEYIRI 228
RRTME SK TRF ICNY+SR L S F F L D+I +KE ++I
Sbjct: 567 RRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKI 625
>gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 350
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 124/173 (71%), Gaps = 2/173 (1%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
++Q ++PWVE+YRPK +++V+HQ EVV L N + T PH+L YGPPG+GKT+ ALA+
Sbjct: 11 LVQDNRPWVERYRPKSLQEVSHQTEVVATLQNAVTTGRLPHLLLYGPPGSGKTSVALALC 70
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR-GGYPCPPYKIIILD 162
QL+ P ++ RVLELNASD+RGI+VVR KIK FA++ V G YP PP+KIIILD
Sbjct: 71 RQLWHPSQWRRRVLELNASDERGISVVRNKIKHFASLTVAKGNNDMENYPNPPFKIIILD 130
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
EAD++T DAQ ALRR +E +SK+TRF ICNY++R L S F F SL
Sbjct: 131 EADTVTPDAQAALRRIIEAHSKITRFILICNYVTR-VIEPLASRCAKFRFQSL 182
>gi|442749365|gb|JAA66842.1| Putative replication factor c subunit rfc4 [Ixodes ricinus]
Length = 274
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEK RPK V DVAHQ+EVV VL +L A+ P++LFYGPPGTGKT+T LA++ +LFG
Sbjct: 60 PWVEKSRPKTVDDVAHQDEVVSVLKKSLLGADLPNLLFYGPPGTGKTSTILALSRELFG- 118
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YKSR+LELNASD+RGI VVR KIK F+ + R G PCPP+KI+ILDEADSMT
Sbjct: 119 DMYKSRILELNASDERGIQVVREKIKNFSQL-TAHATRPDGRPCPPFKIVILDEADSMTP 177
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME K TRF ICNYISR
Sbjct: 178 SAQAALRRTMEKQPKTTRFCLICNYISR 205
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 113/148 (76%), Gaps = 2/148 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DV Q EVV VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG
Sbjct: 34 PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++Y+ R+LELNASD+RGINVVRTKIK FA + S R G PCPP+KII+LDEADSMT
Sbjct: 93 DMYRERILELNASDERGINVVRTKIKNFAQL-TASSVRPDGRPCPPFKIIVLDEADSMTH 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME S+ TRF ICNY+SR
Sbjct: 152 AAQAALRRTMEKESRSTRFCLICNYVSR 179
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/177 (57%), Positives = 124/177 (70%), Gaps = 2/177 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKSQGTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SR
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSR 176
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/177 (57%), Positives = 124/177 (70%), Gaps = 2/177 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKSQGAPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SR
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSR 176
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 126/188 (67%), Gaps = 14/188 (7%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK+ S N + T + E R+ P PWVEKYRP+ V DV Q EV
Sbjct: 6 KTGKSSSGNSSTDKQATNAPTE-------RRKPPA-----PWVEKYRPRSVDDVVEQSEV 53
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG ++Y+ R+LELNASD+RGINV
Sbjct: 54 VAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG-DMYRDRILELNASDERGINV 112
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VRTKIK FA + S R G CPP+KII+LDEADSMT AQ ALRRTME S+ TRF
Sbjct: 113 VRTKIKNFAQL-TASNVRPDGRSCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFC 171
Query: 190 FICNYISR 197
ICNY+SR
Sbjct: 172 LICNYVSR 179
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 125/174 (71%), Gaps = 4/174 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+ PWVEKYRP+ V +V+ Q E+V VL LE A+ PH+LFYGPPGTGKT+T +A A Q
Sbjct: 33 STTPWVEKYRPRTVDEVSEQSEIVAVLKQCLEQGADMPHLLFYGPPGTGKTSTIIAAARQ 92
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++YK+R+LELNASDDRGI V+R K+KTFA + S +R G PCPP+KI++LDEAD
Sbjct: 93 LFG-DMYKNRMLELNASDDRGIQVIRDKVKTFAQL-TASDRRPDGKPCPPFKIVVLDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219
SMT AQ ALRRT+E +K TRF ICNY+S C L S F F L +I
Sbjct: 151 SMTAPAQAALRRTIERETKTTRFCLICNYVS-CIIDPLTSRCSKFRFKPLSHEI 203
>gi|195345297|ref|XP_002039206.1| GM22851 [Drosophila sechellia]
gi|194134432|gb|EDW55948.1| GM22851 [Drosophila sechellia]
Length = 326
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/177 (57%), Positives = 124/177 (70%), Gaps = 2/177 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S + D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGTGDKSQGAPAARRKLPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQI 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SR
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSR 176
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/203 (52%), Positives = 132/203 (65%), Gaps = 3/203 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKNQGATTTRRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTF 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SR
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSR-II 178
Query: 201 SALFSFLLFFMFFSLLDQISFDK 223
+ S F F +L D D+
Sbjct: 179 VPITSRCSKFRFKALGDDKVIDR 201
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 115/157 (73%), Gaps = 10/157 (6%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
APVL PWVEKYRPK V +++HQE VV L ++ PH+LFYGPPGTGKT+T +A
Sbjct: 14 APVL----PWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVA 69
Query: 102 IAHQLFGPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+ QLFGP+ K+ R LELNASDDRGI VVR K+K+FA A+ S PP+KII+
Sbjct: 70 VGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSAS-----GLPPFKIIV 124
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMT DAQ+ALRR ME YSKVTRF ICNY+SR
Sbjct: 125 LDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSR 161
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 115/157 (73%), Gaps = 10/157 (6%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
APVL PWVEKYRPK V +++HQE VV L ++ PH+LFYGPPGTGKT+T +A
Sbjct: 14 APVL----PWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVA 69
Query: 102 IAHQLFGPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+ QLFGP+ K+ R LELNASDDRGI VVR K+K+FA A+ S PP+KII+
Sbjct: 70 VGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASG-----LPPFKIIV 124
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMT DAQ+ALRR ME YSKVTRF ICNY+SR
Sbjct: 125 LDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSR 161
>gi|357617013|gb|EHJ70534.1| replication factor C4 [Danaus plexippus]
Length = 350
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 123/178 (69%), Gaps = 8/178 (4%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K S+T P S + +K AP PWVEKYRPK + D+ Q EVV+VL L
Sbjct: 7 TGKISST-DKPSTSGVKSTKKKAPA-----PWVEKYRPKTIDDIVDQGEVVQVLRECLAG 60
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
+ PH+LFYGPPGTGKT+ LA A QLFG ++ + RVLELNASD+RGI V+R K+KTFA
Sbjct: 61 GDLPHLLFYGPPGTGKTSAILAAARQLFG-DITRERVLELNASDERGIQVIRDKVKTFAQ 119
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ V S R G PCPPYK++ILDEADSMT AQ ALRRTME ++ TRF ICNY+SR
Sbjct: 120 LTV-SNTRPDGRPCPPYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSR 176
>gi|320580296|gb|EFW94519.1| replication factor C subunit 2 [Ogataea parapolymorpha DL-1]
Length = 334
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 114/150 (76%), Gaps = 14/150 (9%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKY V+VL L+TAN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 9 PWVEKY------------HAVQVLKRNLQTANLPHMLFYGPPGTGKTSTILAMAKELYGP 56
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
L++SRVLELNASD+RGI++VR KIK FA +++ + + YPCPPYK++ILDEADSM
Sbjct: 57 HLFRSRVLELNASDERGISIVRDKIKNFARLSISNPSKEDLEKYPCPPYKLLILDEADSM 116
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ+ALRRTMETYS +TRF ICNYI+R
Sbjct: 117 TSDAQSALRRTMETYSGITRFCLICNYITR 146
>gi|342181603|emb|CCC91083.1| putative replication factor C, subunit 2 [Trypanosoma congolense
IL3000]
Length = 347
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 120/157 (76%), Gaps = 6/157 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++PWVEKYRPK + +V QEEVV+ L +TL + A+ PH LF+GPPGTGKTT LA+AH+
Sbjct: 17 DARPWVEKYRPKSLDEVKSQEEVVQALRSTLLQGASMPHFLFHGPPGTGKTTAILAVAHE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR-----GGYPCPPYKIII 160
+FGP+ KSRV ELNASDDRGI V+R K+K+FA AVG+ Q++ YP PP+K+II
Sbjct: 77 MFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQAAVGTVQQKVQSDGKVYPVPPFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEAD++ DAQ ALRR ME +S VTRF +CNY++R
Sbjct: 137 LDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVTR 173
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/178 (57%), Positives = 123/178 (69%), Gaps = 7/178 (3%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K + S + V+R+ P PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 7 TGKSGASSGSDKPQGGTVERRKPPA-----PWVEKYRPRSVDDVVEQSEVVAVLRKCVEG 61
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
A+ P+ML YGPPGTGKT+T LA A Q+FG ++YK R+LELNASD+RGINVVRTKIK F+
Sbjct: 62 ADLPNMLLYGPPGTGKTSTILAAARQIFG-DMYKDRILELNASDERGINVVRTKIKNFSQ 120
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
++ S R G P PP+KIIILDEADSMT AQ+ALRRTME S TRF ICNY+SR
Sbjct: 121 LS-ASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSR 177
>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
dendrobatidis JAM81]
Length = 326
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 113/153 (73%), Gaps = 4/153 (2%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L PW E+YRPK + +++ Q EVV VL+NT++T N PH+L YGPPGTGKT+ LA+A
Sbjct: 4 LVDRSPWTERYRPKTLSEISGQNEVVAVLSNTIQTQNLPHLLLYGPPGTGKTSIILALAR 63
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
QL+G K R+LELNASD+RGI+V+R K+K FA + V + PPYKII+LDEA
Sbjct: 64 QLYGANGLKGRLLELNASDERGIDVIREKVKNFAKITVSAAHSNA----PPYKIIVLDEA 119
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DS+T DAQ+ALRR ME YSK+TRF ICNY+SR
Sbjct: 120 DSLTTDAQSALRRIMENYSKITRFCLICNYVSR 152
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 111/148 (75%), Gaps = 2/148 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DV Q E V VL + A+ P++LFYGPPGTGKT+T LA A QLFG
Sbjct: 31 PWVEKYRPRTVSDVVEQSEAVSVLQQCISGADLPNLLFYGPPGTGKTSTILAAARQLFG- 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ R+LELNASD+RGI V+R K+KTFA + SG R G PCPP+KI+ILDEADSMT
Sbjct: 90 DYYRDRILELNASDERGIQVIRDKVKTFAQL-TASGTRPDGKPCPPFKIVILDEADSMTH 148
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME S+ TRF ICNY+SR
Sbjct: 149 AAQAALRRTMEKESRSTRFCLICNYVSR 176
>gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 111/146 (76%), Gaps = 1/146 (0%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
+E RPK DVAHQ EVV +L + + PH LFYGPPGTGKT+T LA+A + FGP+L
Sbjct: 1 MEHSRPKTTHDVAHQSEVVAMLQKCVAGGDMPHTLFYGPPGTGKTSTILAVAREFFGPQL 60
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
K RVLELNASD+RGI VVR KIK F AV + + GGYPCPP+KII+LDEAD+MTE A
Sbjct: 61 MKERVLELNASDERGIGVVREKIKNF-AVMTANTRVSGGYPCPPFKIILLDEADAMTEAA 119
Query: 172 QNALRRTMETYSKVTRFFFICNYISR 197
Q+ALRRT+E +S VTRF +CNY+SR
Sbjct: 120 QSALRRTIEQHSNVTRFCMVCNYVSR 145
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/178 (57%), Positives = 122/178 (68%), Gaps = 7/178 (3%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K + S + V+R+ P PWVEKYRP V DV Q EVV VL +E
Sbjct: 7 TGKSGASSGSDKPQGGTVERRKPPA-----PWVEKYRPSSVDDVVEQSEVVAVLRKCVEG 61
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
A+ P+ML YGPPGTGKT+T LA A Q+FG ++YK R+LELNASD+RGINVVRTKIK F+
Sbjct: 62 ADLPNMLLYGPPGTGKTSTILAAARQIFG-DMYKDRILELNASDERGINVVRTKIKNFSQ 120
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
++ S R G P PP+KIIILDEADSMT AQ+ALRRTME S TRF ICNY+SR
Sbjct: 121 LS-ASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSR 177
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 111/148 (75%), Gaps = 2/148 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ Q EVV+VL L + PH+LFYGPPGTGKT+ LA A QLFG
Sbjct: 32 PWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFG- 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ + RVLELNASD+RGI VVR K+K FA + V SG+R G PCP YK++ILDEADSMT
Sbjct: 91 DISRDRVLELNASDERGIQVVRDKVKAFAQLTV-SGKRADGRPCPSYKLVILDEADSMTT 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME ++ TRF ICNY+SR
Sbjct: 150 AAQAALRRTMERETRTTRFCLICNYVSR 177
>gi|399219086|emb|CCF75973.1| unnamed protein product [Babesia microti strain RI]
Length = 340
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 114/161 (70%), Gaps = 10/161 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +V+HQ V L ++T N PH++FYGPPGTGKT+ ALA+A QLFG
Sbjct: 16 PWVEKYRPKTISEVSHQINPVSALNQIVKTLNMPHLIFYGPPGTGKTSAALALARQLFGK 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ K R+LELNASDDRGI+VVR KIKT+A + + + G P PP+KI+ILDEAD M
Sbjct: 76 DGLKERILELNASDDRGIDVVREKIKTYARLNISKNRINPETGKPMPPWKIVILDEADMM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCTF 200
T DAQ ALRR +E YS +TRF FICNYI SRC+
Sbjct: 136 TSDAQAALRRAIENYSTITRFIFICNYIYKIIDPLCSRCSL 176
>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 347
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 118/155 (76%), Gaps = 6/155 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PW+EKYRPK + +V QEEVV+ L +TL + A+ PH LF+GPPGTGKTT LA+AH+LF
Sbjct: 19 RPWIEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHGPPGTGKTTAILAVAHELF 78
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS----GQRRGG-YPCPPYKIIILD 162
GP+ KSRV ELNASDDRGI V+R K+K+FA AVG+ Q G YP PP+K+IILD
Sbjct: 79 GPDYIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQSDGKIYPVPPFKVIILD 138
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EAD++ DAQ ALRR ME +S VTRF +CNY++R
Sbjct: 139 EADALLPDAQAALRRMMEDFSDVTRFCILCNYVTR 173
>gi|351711981|gb|EHB14900.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 293
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 115/155 (74%), Gaps = 6/155 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKY PK V +VA QE VV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYCPKCVDEVAFQEVVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRV ELNASD+RGI VVR K+K FA +A+ SG R G PCP +K
Sbjct: 88 ILAAARELFGPELFRSRVFELNASDERGIQVVREKVKKFAQLAI-SGSRSDGKPCPSFKT 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
+ILDEADSMT AQ ALR TME K TRF+ ICN
Sbjct: 147 VILDEADSMTSVAQVALRHTMEKELKTTRFYLICN 181
>gi|340054249|emb|CCC48545.1| putative replication factor C, subunit 2 [Trypanosoma vivax Y486]
Length = 347
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 123/176 (69%), Gaps = 11/176 (6%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHML 86
S P + V+ M P +PWVEKYRPK + +V QEEVV+ L +TL + A+ PH L
Sbjct: 3 SIPPTKKARVEPSMDP-----RPWVEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFL 57
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-G 145
F+GPPGTGKTT LA+A +LFGP+ +SRV ELNASDDRGI V+R K+K FA AVG G
Sbjct: 58 FHGPPGTGKTTAILAVAQELFGPDYIRSRVRELNASDDRGIQVIREKVKAFAQSAVGGVG 117
Query: 146 QRRGG----YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
Q+ YP PP+K+IILDEAD++ DAQ ALRR ME YS VTRF +CNY+SR
Sbjct: 118 QKVQSDGNVYPVPPFKLIILDEADALLPDAQAALRRMMEDYSDVTRFCILCNYVSR 173
>gi|299472904|emb|CBN80473.1| EsV-1-182 , RFC small subunit [Ectocarpus siliculosus]
Length = 326
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 122/167 (73%), Gaps = 5/167 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP++VKDV H + + RVL +T + PH+LF+GPPGTGKT+T LA+A L G
Sbjct: 2 QPWVEKYRPRRVKDVVHHDHLKRVLKGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLG 61
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E + RVLELNASD+RG++VVR KIKTF +++ S Q CPP+K++ILDEAD+MT
Sbjct: 62 EENMRERVLELNASDERGLDVVRDKIKTFCKMSISSFQ----PGCPPFKLVILDEADTMT 117
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
DAQ+ALRRTMET + VTRF +CNY+S+ + L S F F +L
Sbjct: 118 ADAQSALRRTMETQAVVTRFCLVCNYVSK-IIAPLASRCAKFRFSTL 163
>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
Length = 330
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 114/163 (69%), Gaps = 10/163 (6%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGINVVR KIK + +++ + P PP+K+++LDEA
Sbjct: 62 FGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKINSENNEPLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
D MTEDAQ+ALRR +E YS VTRF ICNYI SRC+
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS 164
>gi|13242652|ref|NP_077667.1| EsV-1-182 [Ectocarpus siliculosus virus 1]
gi|13177452|gb|AAK14596.1|AF204951_181 EsV-1-182 [Ectocarpus siliculosus virus 1]
Length = 326
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 123/167 (73%), Gaps = 5/167 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP++V+DV H + + RVL +T + PH+LF+GPPGTGKT+T LA+A L G
Sbjct: 2 QPWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLG 61
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ RVLELNASD+RG++VVR KIKTF+ +++ S Q CPP+K++ILDEAD+MT
Sbjct: 62 EGNMRERVLELNASDERGLDVVRDKIKTFSKMSISSFQ----PGCPPFKLVILDEADTMT 117
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
DAQ+ALRRTMET+S VTRF +CNY+S+ + L S F F +L
Sbjct: 118 ADAQSALRRTMETHSVVTRFCLVCNYVSK-IIAPLASRCAKFRFSTL 163
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 123/178 (69%), Gaps = 4/178 (2%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
+ + SS EK+ P + S+Q PWVEKYRP++V+D+AHQ E ++L LET N
Sbjct: 4 AVSASSVEKAPSPFSTAAPPRVSSAQVVPWVEKYRPRRVEDMAHQVEPKKMLRRILETGN 63
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
PH+LFYGPPGTGKT+ ALA+ +LFG E K+R+LELNASDDRGI VVR +IK +
Sbjct: 64 MPHLLFYGPPGTGKTSAALALVRELFGREEAKNRLLELNASDDRGIKVVRERIKQYTKTN 123
Query: 142 VGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ G+ G P +KI+ILDEAD MT+DAQ+ALRR ME +S+ TRF ICNY+ R
Sbjct: 124 IAKGKINPETGREMPTWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHR 181
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V++QEEVV VL +L+ A+ P++LFYGPPGTGKT+T LA A LFG
Sbjct: 35 PWVEKYRPRTIDEVSYQEEVVAVLQKSLQGADLPNLLFYGPPGTGKTSTILAAARDLFG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YK RVLELNASD+RGI VVR K+K F+ V S R G CPP+KI+ILDEADSMT
Sbjct: 94 DIYKDRVLELNASDERGIQVVREKVKIFSQRTV-SSVRPDGKQCPPFKIVILDEADSMTG 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME +K TRF ICNY+SR
Sbjct: 153 AAQAALRRTMEKETKSTRFCLICNYVSR 180
>gi|340501071|gb|EGR27891.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 357
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 126/201 (62%), Gaps = 24/201 (11%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V++QEEVV+ L L+T N PH++F+GPPGTGKT++ LA A QL+GP
Sbjct: 12 PWVEKYRPNKIDEVSYQEEVVKSLEGVLQTGNLPHIIFHGPPGTGKTSSILAFAKQLYGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG----------------GYPC 153
Y+ R+LELNASDDRGI VVR KIK FA V + Y C
Sbjct: 72 NFYRDRILELNASDDRGIQVVREKIKKFAQQVVVKNPDKQFFFYQNQKSYQLFQIRNYKC 131
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFF 213
P YKIIILDEADSMT +AQ+ALRR +E S TRF ICNYI++ L S + F F
Sbjct: 132 PNYKIIILDEADSMTTEAQSALRRIIEDNSSTTRFCIICNYITK-IIEPLASRCVKFRFK 190
Query: 214 SLLDQISF-------DKEYIR 227
++++ DKEYI+
Sbjct: 191 PIVEEAQLCKLKEICDKEYIQ 211
>gi|403350390|gb|EJY74655.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 374
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T Q+ + +D+ + AP PWVEKYRP +V++V+HQ EVV L ++ T PH
Sbjct: 26 TNQTQDHEMKDQTQS--APSRPKFTPWVEKYRPSKVEEVSHQTEVVSALRQSILTGQVPH 83
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++FYGPPGTGKT+T LA++ +LFG E +K RVLELNASD+RGI +VR KIK FA + S
Sbjct: 84 LMFYGPPGTGKTSTILALSKELFGHEFFKQRVLELNASDERGIAIVREKIKKFAQRKI-S 142
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ CPP +IIILDEADSMT DAQ ALRR +E YS TRF ICNYIS+
Sbjct: 143 KHPDSSFQCPPIQIIILDEADSMTIDAQAALRRIIEQYSTNTRFCIICNYISK 195
>gi|378727800|gb|EHY54259.1| replication factor C subunit 2/4 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 121/179 (67%), Gaps = 8/179 (4%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
+AP L PWVEKYRPK + DV QE L + AN PH+L +GPPGTGKT+T L
Sbjct: 28 LAPALV---PWVEKYRPKSLDDVKSQEHATETLRRMVHAANLPHLLLFGPPGTGKTSTIL 84
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA----VAVGSGQRRGGYPCPPY 156
A+ +LFGPEL K+RV E+NASD+RG+ V+R K+K FA+ A S + R YPCPP+
Sbjct: 85 ALCRELFGPELMKTRVKEMNASDERGLTVIREKVKQFASQHLVSAPVSAEYREKYPCPPF 144
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
K++ILDEAD++T DAQ+ALRR +E YSK TRF I N++SR + + S F F SL
Sbjct: 145 KVVILDEADALTTDAQSALRRIIENYSKTTRFCLIANFVSRI-IAPIASRCSKFRFKSL 202
>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
chabaudi]
Length = 330
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 10/163 (6%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGI VVR KIK + +++ + P PP+K+++LDEA
Sbjct: 62 FGKENISERVLELNASDDRGITVVREKIKAYTRISISKNKINNETNEPLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
D MTEDAQ+ALRR +E YS VTRF ICNYI SRC+
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS 164
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 112/151 (74%), Gaps = 6/151 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK + D++HQE VV L ++ + PH+LFYGPPGTGKT+T +A+A +L+
Sbjct: 9 SLPWIEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPPGTGKTSTIVAVARELY 68
Query: 108 GPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + K+ R LELNASDDRGI VVR K+K FA A+ S + P +KII+LDEADS
Sbjct: 69 GNDFRKNGRYLELNASDDRGIKVVREKVKLFAQGAINSSE-----SMPAFKIIVLDEADS 123
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT DAQ+ALRR ME YSKVTRF ICNY+SR
Sbjct: 124 MTNDAQSALRRMMEDYSKVTRFCLICNYVSR 154
>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
Length = 330
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 10/163 (6%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEA
Sbjct: 62 FGKENINERVLELNASDDRGINVVREKIKAYTRISISKNKINTETNEQLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
D MTEDAQ+ALRR +E YS VTRF ICNYI SRC+
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS 164
>gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti]
gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti]
gi|108877369|gb|EAT41594.1| AAEL006788-PA [Aedes aegypti]
Length = 358
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 123/174 (70%), Gaps = 7/174 (4%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
S +++ P E + K V PWVEKYRPK V DV Q EVV VL +L TA+ P
Sbjct: 13 SPSKAGPSDGSSEKRTKTHSV-----PWVEKYRPKSVDDVVEQAEVVAVLRESLSTADLP 67
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
++L YGPPGTGKT+T LA A QLFG +++K R+LELNASDDRGI V+R K+KTFA +
Sbjct: 68 NLLLYGPPGTGKTSTILAAARQLFG-DMFKERILELNASDDRGIAVIRNKVKTFAQL-TA 125
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SG R G PCPP+KI+ILDEAD+MT AQ ALRRTME +K TRF +CNY+SR
Sbjct: 126 SGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSR 179
>gi|351707100|gb|EHB10019.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 361
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/181 (58%), Positives = 125/181 (69%), Gaps = 12/181 (6%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKY PK V +VA QE VV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 66 KKVKPV-----PWVEKYHPKCVDEVAFQE-VVAVLKKSLEGADLPNLLFYGPPGTGKTST 119
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELN S +RGI VVR K+K FA +AV G R G PCPP+K+
Sbjct: 120 ILAAAQELFGPELFRSRVLELNGSGERGIQVVREKVKNFAQLAV-PGSRSDGKPCPPFKV 178
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALR TME SK RF CNY++R L S F F L D+
Sbjct: 179 VILDEADSMTSAAQAALRYTMEE-SKTIRF---CNYVNR-IIEPLTSRCSKFRFKPLSDK 233
Query: 219 I 219
I
Sbjct: 234 I 234
>gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66]
gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris
RN66]
Length = 335
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+ Q++ WVEKYRP+Q+ D+ HQ EVV++L N LE N PH+LFYGPPGTGKT+ LA+
Sbjct: 3 ITQNNNLWVEKYRPRQIADIYHQTEVVKMLKNVLEFGNMPHLLFYGPPGTGKTSAILALC 62
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIIL 161
+LFG + +++R LELNASD+RGINVVR KIKT+ V S + G PP+K++IL
Sbjct: 63 RELFGNDEFRNRTLELNASDERGINVVREKIKTWTRQVVYSNKINPITGRKIPPWKVVIL 122
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEA+ MT DAQ+ALRR +ET +K TRF ICNYI++
Sbjct: 123 DEAEMMTSDAQSALRRIIETSAKNTRFVIICNYINK 158
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++++V++QEEV++ L L + N PH++ +GPPGTGKT++ LA A QL+GP
Sbjct: 43 PWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQLYGP 102
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK R+LELNASDDRGI +VR KIK FA V + + CP +KIIILDEADSMT
Sbjct: 103 TFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDK-SFKCPNFKIIILDEADSMTT 161
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
+AQ+ALRR +E S TRF ICNYI++
Sbjct: 162 EAQSALRRIIEDTSSTTRFCIICNYITK 189
>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
Length = 350
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/193 (55%), Positives = 127/193 (65%), Gaps = 10/193 (5%)
Query: 38 KRKMAP-VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGK 95
K+K AP VL PW+EKYRPK V DV QEEVV +L L E P+MLFYGPPGTGK
Sbjct: 19 KKKAAPRVL----PWIEKYRPKGVNDVCAQEEVVAMLKAVLIEGKELPNMLFYGPPGTGK 74
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+T LA+A +FG L RV ELNASD+RGI VVR K+K FA S QR G CP
Sbjct: 75 TSTILAMARDMFG-NLASERVCELNASDERGIAVVREKVKNFAMTTANS-QRADGKKCPN 132
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
+K+IILDEADSMT+ AQ ALRRTME YSK TRF +CNY+SR + S F F L
Sbjct: 133 FKLIILDEADSMTKSAQEALRRTMEVYSKSTRFCLLCNYVSR-IIDPITSRTAKFRFRLL 191
Query: 216 LDQISFDK-EYIR 227
+I +++ +IR
Sbjct: 192 PKEIQYNQIRHIR 204
>gi|398019618|ref|XP_003862973.1| replication factor C, subunit 2, putative [Leishmania donovani]
gi|322501204|emb|CBZ36283.1| replication factor C, subunit 2, putative [Leishmania donovani]
Length = 354
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 122/178 (68%), Gaps = 8/178 (4%)
Query: 28 SSPEKSEDEVKRKMAP-VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHM 85
SS + ++ K + AP ++ PWVEKYRP+ + +V Q+E V L L E AN PH
Sbjct: 3 SSSQPAQKRAKTEGAPDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHF 62
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LF+GPPGTGKTT+ LA+AH+LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S
Sbjct: 63 LFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSS 122
Query: 146 QRRGG------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YP PP+K+IILDEAD++ DAQ ALRR ME +S VTRF +CNY+SR
Sbjct: 123 GSSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSR 180
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 114/150 (76%), Gaps = 2/150 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK V DV Q EVV VL +L T + P++L YGPPGTGKT+T LA A QLF
Sbjct: 35 SVPWVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPNLLLYGPPGTGKTSTILAAARQLF 94
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G +++K R+LELNASDDRGI V+R K+KTFA + SG R G PCPP+KI+ILDEAD+M
Sbjct: 95 G-DMFKERILELNASDDRGIAVIRNKVKTFAQL-TASGTRTDGKPCPPFKIVILDEADAM 152
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T AQ ALRRTME +K TRF +CNY+SR
Sbjct: 153 THAAQAALRRTMEKETKTTRFCLVCNYVSR 182
>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax Sal-1]
gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
Length = 330
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 10/160 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 65 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
TEDAQ+ALRR +E YS VTRF ICNYI SRC+
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS 164
>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
strain H]
Length = 330
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 10/160 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 65 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
TEDAQ+ALRR +E YS VTRF ICNYI SRC+
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS 164
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/196 (51%), Positives = 130/196 (66%), Gaps = 18/196 (9%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DVA Q+EVV VL L++ + PH+LF+GPPGTGKT+T LA+A L+G
Sbjct: 9 PWVEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDLYGN 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E ++ +VLELNASD+RGI+V+R K+K F+ + G+ R Y+I+ILDEADSMT
Sbjct: 69 E-FRQKVLELNASDERGISVIREKVKNFSQMTANQGKIR-------YRIVILDEADSMTR 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCTFSALFSFLLFFMFFSLLDQISF 221
DAQ ALRRTME Y+K TRF ICNY+ SRC+ F L + + LD+I
Sbjct: 121 DAQTALRRTMEKYTKTTRFCLICNYVTKIIPPLNSRCS-KFRFRPLPTDVLVNKLDEICT 179
Query: 222 DKEYIRIIYASTLKFL 237
KE + + LKFL
Sbjct: 180 -KENVNFRGSDDLKFL 194
>gi|169602695|ref|XP_001794769.1| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
gi|160706232|gb|EAT88110.2| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
Length = 1017
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/194 (52%), Positives = 132/194 (68%), Gaps = 21/194 (10%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K A +L QP E + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T
Sbjct: 632 KGAAMLGLRQPKCEPL--STLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 689
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG- 150
LA+A QL+GPEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 690 LALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGE 749
Query: 151 ---------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++R
Sbjct: 750 AKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTR-IID 808
Query: 202 ALFSFLLFFMFFSL 215
L S F F SL
Sbjct: 809 PLASRCSKFRFKSL 822
>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 112/148 (75%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ QEE V+ L TLET + PH++F+GPPGTGKT+ ALA+ LFG
Sbjct: 9 PWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFG- 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E ++ RV ELNASD+RGI+ VR+ +K FA++AV +G+ P+KI+ILDEADSMT
Sbjct: 68 EDFRLRVKELNASDERGIDAVRSSVKEFASLAVPNGK-------IPFKIVILDEADSMTS 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQNALRR +ETYS VTRF ICNY+S+
Sbjct: 121 AAQNALRRIIETYSAVTRFIIICNYVSK 148
>gi|390371040|dbj|GAB64921.1| replication factor C subunit 2 [Plasmodium cynomolgi strain B]
Length = 342
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 10/160 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 17 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 77 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 136
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
TEDAQ+ALRR +E YS VTRF ICNYI SRC+
Sbjct: 137 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS 176
>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 112/148 (75%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ QEE V+ L TLET + PH++F+GPPGTGKT+ ALA+ LFG
Sbjct: 9 PWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFGD 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ ++ RV ELNASD+RGI+ VR+ IK FA++AV +G+ P+KI+ILDEADSMT
Sbjct: 69 D-FRLRVKELNASDERGIDAVRSSIKEFASLAVPNGK-------IPFKIVILDEADSMTS 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQNALRR +ETYS VTRF ICNY+S+
Sbjct: 121 AAQNALRRIIETYSSVTRFIIICNYVSK 148
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 127/188 (67%), Gaps = 15/188 (7%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK P +K S ++S E+S P + PWVEKYRPK VKDV Q EV
Sbjct: 6 KTGK-LGPGEFKKVSNSRSKEERS--------GP----APPWVEKYRPKNVKDVVEQTEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL L+ + P++LFYGPPGTGKT+T LA A QLFG LYK RVLELNASD+RGI V
Sbjct: 53 VEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERVLELNASDERGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + G G R G CPP+KIIILDEADSMT AQ ALRRTME S TRF
Sbjct: 112 VREKIKSFAQLTAG-GIRDDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESHSTRFC 170
Query: 190 FICNYISR 197
ICNY+SR
Sbjct: 171 LICNYVSR 178
>gi|146093994|ref|XP_001467108.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
Length = 354
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/158 (58%), Positives = 113/158 (71%), Gaps = 7/158 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SR
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSR 180
>gi|401425841|ref|XP_003877405.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 354
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/158 (58%), Positives = 113/158 (71%), Gaps = 7/158 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SR
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSR 180
>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
Length = 354
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 115/153 (75%), Gaps = 2/153 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q+ PWVEKYRP++V D+ Q+EVV VL L+ A+ P++LFYGPPGTGKT+ A+A+ +
Sbjct: 26 QAVVPWVEKYRPRKVDDIVFQDEVVSVLKKVLKGADLPNLLFYGPPGTGKTSAAVALCRE 85
Query: 106 LF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LF P++Y RVLE+NASD+RGIN+VRT+IK FA AV S G + K+IILDEA
Sbjct: 86 LFKNPDVYSDRVLEMNASDERGINIVRTRIKEFARRAVSSRLPDGSHVL-GLKVIILDEA 144
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
D+MT+ AQ ALRRTME S+ TRFF ICNYISR
Sbjct: 145 DAMTDAAQAALRRTMEKESRSTRFFLICNYISR 177
>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|350645477|emb|CCD59829.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Schistosoma mansoni]
Length = 362
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/155 (60%), Positives = 112/155 (72%), Gaps = 4/155 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK V +VA+Q EVV VL +E ++ P++LFYGPPGTGKT+ LA+A Q
Sbjct: 22 QKHIPWVEKYRPKTVGEVAYQTEVVSVLQRCIEGSDLPNLLFYGPPGTGKTSLILALARQ 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV---GSGQRRGGYPCPPYKIIILD 162
LFGP LY RVLELNASD+RGI+V+R K+K FA +AV + PPYK+IILD
Sbjct: 82 LFGP-LYSERVLELNASDERGISVIREKVKAFAHIAVSSSTNSSGSSSTNIPPYKLIILD 140
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EADSMT AQ ALRRTMET + TRF CNY++R
Sbjct: 141 EADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTR 175
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 134/221 (60%), Gaps = 23/221 (10%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK +P +K ST+++ +K + PWVEKYRPK V D+ Q EV
Sbjct: 6 KTGKLGAPTDVKKPSTSRAKDDKKD-------------LTPWVEKYRPKNVDDIVEQTEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V V+ ++ + P+MLFYGPPGTGKT+ A A Q+FG +YK R+LELNASDDRGI V
Sbjct: 53 VNVIRQAMKHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SMYKDRILELNASDDRGIQV 111
Query: 130 VRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186
VR KIK+FA A +G G CPP+KIIILDEADSMT AQ ALRR ME + T
Sbjct: 112 VREKIKSFALRKANPIGP----DGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHST 167
Query: 187 RFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK-EYI 226
RF +CNY+SR + S F F L D+ S + EYI
Sbjct: 168 RFCLVCNYLSR-IIKPIASRCTKFRFKPLSDEKSISRLEYI 207
>gi|341896367|gb|EGT52302.1| hypothetical protein CAEBREN_14732 [Caenorhabditis brenneri]
Length = 353
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 109/147 (74%), Gaps = 3/147 (2%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+AHQ+EVV +L L+ + PH+LFYGPPGTGKT+TALA HQLF
Sbjct: 36 WTEKYRPKTLDDIAHQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSTALAFCHQLFPKS 95
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ RVL+LNASD+RGI+VVR K++ F+ ++GSG G KIIILDE D+MT +
Sbjct: 96 IFHDRVLDLNASDERGISVVRQKVQAFSKTSLGSG---GKEDVLKLKIIILDEVDAMTRE 152
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+A+RR +E YSK TRF ICNY+SR
Sbjct: 153 AQSAMRRVIEDYSKTTRFILICNYVSR 179
>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
Length = 330
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 109/160 (68%), Gaps = 10/160 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
TEDAQ+ALRR +E YS VTRF ICNYI SRC+
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCS 164
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 132/218 (60%), Gaps = 17/218 (7%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK +P +K ST++ +K + PWVEKYRP+ V D+ Q EV
Sbjct: 39 KTGKLGAPAEVKKPSTSRVKDDKKD-------------LTPWVEKYRPRNVDDIVEQTEV 85
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V V+ +E + P+MLFYGPPGTGKT+ A A Q+FG +YK R+LELNASDDRGI V
Sbjct: 86 VNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SMYKDRILELNASDDRGIQV 144
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+F A+ + G CPP+KI+ILDEADSMT AQ ALRR ME S TRF
Sbjct: 145 VRDKIKSF-ALRRANPNGPDGKKCPPFKIVILDEADSMTGAAQTALRRIMEKESHSTRFC 203
Query: 190 FICNYISRCTFSALFSFLLFFMFFSLLDQISFDK-EYI 226
+CNY+SR + S F F L D+ S + EYI
Sbjct: 204 LVCNYLSR-IIKPIASRCTKFRFKPLTDEKSIARLEYI 240
>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
Length = 330
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 109/160 (68%), Gaps = 10/160 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
TEDAQ+ALRR +E YS VTRF ICNYI SRC+
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCS 164
>gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator]
Length = 360
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 133/218 (61%), Gaps = 17/218 (7%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK + +K ST++S +K + PWVEKYRPK V D+ Q EV
Sbjct: 6 KTGKLGASVEVKKPSTSRSKEDKKD-------------LTPWVEKYRPKSVDDIVEQTEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V V+ +E + P+MLFYGPPGTGKT+ A A Q+FG +Y+ R+LELNASDDRGI V
Sbjct: 53 VNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SIYRDRILELNASDDRGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+F A+ + R G CPP+KIIILDEADSMT AQ ALRR ME + TRF
Sbjct: 112 VRDKIKSF-ALRRANPTRPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHSTRFC 170
Query: 190 FICNYISRCTFSALFSFLLFFMFFSLLDQISFDK-EYI 226
+CNY+SR + S F F L D+ S + EYI
Sbjct: 171 LVCNYLSR-IIKPITSRCTKFRFKPLSDEKSIARLEYI 207
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 117/178 (65%), Gaps = 4/178 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V D+ Q EVV V+ +E + P+MLFYGPPGTGKT+ A A Q+FG
Sbjct: 34 PWVEKYRPKNVNDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+YK R+LELNASDDRGI VVR KIK+F A+ + G CPP+KIIILDEADSMT
Sbjct: 93 SMYKDRILELNASDDRGIQVVREKIKSF-ALRRANPNGPDGKKCPPFKIIILDEADSMTG 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK-EYI 226
AQ ALRR ME S TRF +CNY+SR + S F F L D+ S + EYI
Sbjct: 152 AAQTALRRIMEKESHSTRFCLVCNYLSR-IIKPIASRCTKFRFKPLSDEKSIARLEYI 208
>gi|157872662|ref|XP_001684866.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
Length = 354
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/158 (58%), Positives = 113/158 (71%), Gaps = 7/158 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGI+VVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SR
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSR 180
>gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa]
gi|307764567|gb|EFO23801.1| replication factor C [Loa loa]
Length = 308
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 110/149 (73%), Gaps = 2/149 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-G 108
PWVEKYRP++V++VA Q EVV VL LE A+ P++LFYGPPGTGKT+ A+A+ QLF
Sbjct: 22 PWVEKYRPRKVEEVAFQNEVVSVLKKVLEGADLPNLLFYGPPGTGKTSAAIALCRQLFRN 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E Y RV+E+NASD+RGIN+VR KIK FA AV S G P K+IILDEAD+MT
Sbjct: 82 TETYHDRVMEMNASDERGINIVRNKIKEFARRAV-SSHLPDGSPVVGLKVIILDEADAMT 140
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME S+ TRFF ICNYI+R
Sbjct: 141 TPAQAALRRTMEKESRTTRFFLICNYITR 169
>gi|300121957|emb|CBK22531.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 121/167 (72%), Gaps = 9/167 (5%)
Query: 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119
+ DV+HQEE + L +++ N PH+LFYGPPGTGKT+T LA+ H+LFGP+L RVLE+
Sbjct: 1 MDDVSHQEEALNALRRSVKEGNLPHLLFYGPPGTGKTSTILALTHELFGPDL-SDRVLEM 59
Query: 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
NASD+RGI+V+R K+ FA +V Q GYP PPYKIII+DEADS+T DAQ+ALRR M
Sbjct: 60 NASDERGIDVIREKVILFARQSVR--QSIPGYPSPPYKIIIMDEADSLTMDAQSALRRVM 117
Query: 180 ETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-----LDQISF 221
E YS+VTRF FICNYIS+ AL S F F +L L+++SF
Sbjct: 118 EQYSRVTRFCFICNYISK-IIPALSSRCARFEFGALPRGSVLERLSF 163
>gi|66360032|ref|XP_627194.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
gi|46228833|gb|EAK89703.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
Length = 335
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 111/153 (72%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS WVEKYRP V D++H ++VV +L++ L+ N PH+LF+GPPGTGKT+ LA++ +L
Sbjct: 5 SSNLWVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSREL 64
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEA 164
FGP YK+R+LELNASD+RGI+VVR KIK++ V G P +KI+ILDEA
Sbjct: 65 FGPNEYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEA 124
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ MT DAQ+ALRR +E SK TRF ICNYIS+
Sbjct: 125 EMMTADAQSALRRIIEVSSKNTRFVIICNYISK 157
>gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi]
gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi]
Length = 315
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 111/149 (74%), Gaps = 2/149 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-G 108
PWVEKYRP++V++VA Q EVV VL L+ A+ P++LFYGPPGTGKT+ A+A+ QLF
Sbjct: 22 PWVEKYRPRKVEEVAFQNEVVSVLKKVLQGADLPNLLFYGPPGTGKTSAAIALCRQLFRN 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ Y+ RV+E+NASD+RGIN+VR KIK FA AV S G P K+IILDEAD+MT
Sbjct: 82 TDTYRDRVMEMNASDERGINIVRNKIKEFARRAV-SSHLPDGSPVVGLKVIILDEADAMT 140
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME S+ TRFF ICNYI+R
Sbjct: 141 TPAQAALRRTMERESRTTRFFLICNYITR 169
>gi|340721765|ref|XP_003399285.1| PREDICTED: replication factor C subunit 4-like [Bombus terrestris]
Length = 357
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 137/218 (62%), Gaps = 17/218 (7%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK P +K ST++S E S S+ PWVEKYRP+ V+DV Q EV
Sbjct: 6 KTGK-LGPGEPKKASTSRSKEEHS------------GSATPWVEKYRPRTVEDVVEQAEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL L + P++LFYGPPGTGKT+T LA A QLFG LYK R+LELNASD+RGI V
Sbjct: 53 VEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERILELNASDERGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + G G R G CPP+KIIILDEADSMT AQ ALRRTME S TRF
Sbjct: 112 VRDKIKSFAQLTAG-GMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHTTRFC 170
Query: 190 FICNYISRCTFSALFSFLLFFMFFSL-LDQISFDKEYI 226
ICNY+SR L S F F L D+I EYI
Sbjct: 171 LICNYVSR-IIEPLTSRCTKFRFKPLGEDKIVERLEYI 207
>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
subunit; replication factor C subunit)(RFC37)in Mus
musculus [Schistosoma japonicum]
Length = 364
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 92/158 (58%), Positives = 110/158 (69%), Gaps = 7/158 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + +VA+Q EVV VL + ++ P++LFYGPPGTGKT+ LA+A Q
Sbjct: 22 QKHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQ 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV------GSGQRRGGYPCPPYKII 159
LFGP LY RVLELNASD+RGI V+R K+K FA VAV + PPYK+I
Sbjct: 82 LFGP-LYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEADSMT AQ ALRRTMET + TRF CNY++R
Sbjct: 141 ILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTR 178
>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
Length = 364
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/158 (58%), Positives = 110/158 (69%), Gaps = 7/158 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + +VA+Q EVV VL + ++ P++LFYGPPGTGKT+ LA+A Q
Sbjct: 22 QKHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQ 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV------GSGQRRGGYPCPPYKII 159
LFGP LY RVLELNASD+RGI V+R K+K FA VAV + PPYK+I
Sbjct: 82 LFGP-LYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEADSMT AQ ALRRTMET + TRF CNY++R
Sbjct: 141 ILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTR 178
>gi|407416746|gb|EKF37786.1| replication factor C, subunit 2, putative [Trypanosoma cruzi
marinkellei]
Length = 445
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 112/157 (71%), Gaps = 6/157 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 115 NATPWVEKYRPMTLNEVKSQEEAVSALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 174
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS----GQRRGG-YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ Q G YP P +K+II
Sbjct: 175 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 234
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SR
Sbjct: 235 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSR 271
>gi|440465527|gb|ELQ34846.1| replication factor C subunit 2 [Magnaporthe oryzae Y34]
gi|440481017|gb|ELQ61644.1| replication factor C subunit 2 [Magnaporthe oryzae P131]
Length = 323
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 89/135 (65%), Positives = 106/135 (78%), Gaps = 3/135 (2%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+A +LFGPEL KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 7 PHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQL 66
Query: 143 GSGQR--RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTF 200
+ + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 67 TNPPPGYKSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR-II 125
Query: 201 SALFSFLLFFMFFSL 215
L S F F SL
Sbjct: 126 DPLASRCSKFRFKSL 140
>gi|350426161|ref|XP_003494352.1| PREDICTED: replication factor C subunit 4-like [Bombus impatiens]
Length = 357
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 137/218 (62%), Gaps = 17/218 (7%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK P +K ST++S E S S+ PWVEKYRP+ V+DV Q EV
Sbjct: 6 KTGK-LGPGEPKKVSTSRSKEEHS------------GSATPWVEKYRPRTVEDVVEQAEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL L + P++LFYGPPGTGKT+T LA A QLFG LYK R+LELNASD+RGI V
Sbjct: 53 VEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERLLELNASDERGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + G G R G CPP+KIIILDEADSMT AQ ALRRTME S TRF
Sbjct: 112 VRDKIKSFAQLTAG-GMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHSTRFC 170
Query: 190 FICNYISRCTFSALFSFLLFFMFFSL-LDQISFDKEYI 226
ICNY+SR L S F F L D+I EYI
Sbjct: 171 LICNYVSR-IIEPLTSRCTKFRFKPLGEDKIVERLEYI 207
>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 112/157 (71%), Gaps = 6/157 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-TANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L+ +A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQPSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS----GQRRGG-YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVGS Q G YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGSVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SR
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSR 173
>gi|383860560|ref|XP_003705757.1| PREDICTED: replication factor C subunit 4-like [Megachile
rotundata]
Length = 357
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/168 (62%), Positives = 117/168 (69%), Gaps = 7/168 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S + KR P PWVEKYRPK V+DV Q EVV VL L ++ P++LFYG
Sbjct: 18 PSTSRTKEKRSAPP-----PPWVEKYRPKTVEDVVEQAEVVEVLRQCLSGSDFPNLLFYG 72
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPGTGKT+T LA A QLFG LYK R+LELNASD+RGI VVR KIKTFA + G G R
Sbjct: 73 PPGTGKTSTILAAARQLFG-SLYKDRILELNASDERGIQVVRDKIKTFAQLTAG-GMRDD 130
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
G CPP+KIIILDEADSMT AQ ALRRTME S TRF ICNY+SR
Sbjct: 131 GKRCPPFKIIILDEADSMTAAAQAALRRTMEKESHSTRFCLICNYVSR 178
>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 112/157 (71%), Gaps = 6/157 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS----GQRRGG-YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ Q G YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SR
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSR 173
>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
Length = 335
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 106/147 (72%), Gaps = 3/147 (2%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+AHQEEVV +L L+ + PH+LFYGPPGTGKT+TALA QLF
Sbjct: 18 WTEKYRPKTLDDIAHQEEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCRQLFPSS 77
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ RVL+LNASD+RGI+VVR KI+ F+ +GS + KIIILDE D+MT +
Sbjct: 78 IFRDRVLDLNASDERGISVVRQKIQAFSKTTLGSSNKEDVL---RLKIIILDEVDAMTRE 134
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ A+RR +E +SK TRF ICNY+SR
Sbjct: 135 AQAAMRRVIEDFSKTTRFILICNYVSR 161
>gi|407851932|gb|EKG05623.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 112/157 (71%), Gaps = 6/157 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS----GQRRGG-YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ Q G YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SR
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSR 173
>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
mellifera]
Length = 303
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/148 (66%), Positives = 111/148 (75%), Gaps = 2/148 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V+DV Q EVV VL L+ + P++LFYGPPGTGKT+T LA A QLFG
Sbjct: 6 PWVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG- 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LYK RVLELNASD+RGI VVR KIK+FA + G G R G CPP+KII+LDEADSMT
Sbjct: 65 SLYKERVLELNASDERGIQVVREKIKSFAQLTAG-GMRDDGKSCPPFKIIVLDEADSMTG 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME S TRF ICNY+SR
Sbjct: 124 AAQAALRRTMEKESHSTRFCLICNYVSR 151
>gi|443926001|gb|ELU44750.1| replication factor C [Rhizoctonia solani AG-1 IA]
Length = 1949
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/114 (68%), Positives = 95/114 (83%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA++ QLFGPEL+++RVLELNASD+RGI++VR KIK FA +
Sbjct: 1 MLFYGPPGTGKTSTILALSRQLFGPELFRTRVLELNASDERGISIVREKIKNFARQTPRA 60
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
+ YPCPPYKIIILDEADSMT+DAQ ALRR ME Y+K+TRF +CNY++RC
Sbjct: 61 AEANSKYPCPPYKIIILDEADSMTQDAQAALRRIMENYAKITRFCLVCNYVTRC 114
>gi|156550041|ref|XP_001605078.1| PREDICTED: replication factor C subunit 4-like [Nasonia
vitripennis]
Length = 358
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/178 (57%), Positives = 124/178 (69%), Gaps = 4/178 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V+DV Q EVV VL L + P++L YGPPGTGKT+T LA A QLFG
Sbjct: 34 PWVEKYRPKTVEDVVEQGEVVEVLRQCLSGGDFPNLLLYGPPGTGKTSTILAAARQLFG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++K R+LELNASD+RGI VVR K+K FA + G+ R G PCPP+KIIILDEADSMT+
Sbjct: 93 SMFKERILELNASDERGIQVVREKVKKFAQLTAGN-TRPDGKPCPPFKIIILDEADSMTD 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK-EYI 226
AQ+ALRRTME S+ TRF ICNY+SR L S F F L ++ ++ EYI
Sbjct: 152 AAQSALRRTMEKESQTTRFCLICNYVSR-IIEPLTSRCTKFRFKPLGEEKIIERLEYI 208
>gi|428673231|gb|EKX74144.1| replication factor C subunit 2, putative [Babesia equi]
Length = 228
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 119/180 (66%), Gaps = 4/180 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKLSDVVFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGA 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNKINPETKRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK-EYI 226
T DAQ ALRR +E YS ++RF ICNY+ + ++S F F + D+ EYI
Sbjct: 128 TSDAQAALRRVIENYSNISRFILICNYLHK-IIGPIYSRCSAFHFKPIEQNSQVDRLEYI 186
>gi|397621040|gb|EJK66073.1| hypothetical protein THAOC_13022 [Thalassiosira oceanica]
Length = 363
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 113/174 (64%), Gaps = 25/174 (14%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ PWVEKYRP+ ++DV+HQ E++ LTN +ET PH+LFYGPPG +T QL
Sbjct: 6 TATPWVEKYRPRSLEDVSHQTEIISTLTNAVETNRLPHLLFYGPPGGRFHSTHKC--RQL 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----------------GSGQRRGG 150
+ P K RVLELNASD+RGI+VVR KIK FA++A+ G G+
Sbjct: 64 YEPSQLKRRVLELNASDERGISVVRDKIKHFASLAIGSSSGGGSKKNFFAKKGDGEAMDA 123
Query: 151 -------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YP PP+KIIILDEAD++T DAQ ALRR +E YSKVTRF ICNY++R
Sbjct: 124 EEAPSKKYPNPPFKIIILDEADTVTRDAQAALRRVIEAYSKVTRFVLICNYVTR 177
>gi|401410508|ref|XP_003884702.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
gi|325119120|emb|CBZ54672.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
Length = 387
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 115/187 (61%), Gaps = 37/187 (19%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP++V+++AHQEE ++L LET N PH+LFYGPPGTGKT+ ALA+ +LFG
Sbjct: 35 PWVEKYRPRRVEEMAHQEEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFGR 94
Query: 110 ELYKSRVLELNASDDRG---------------------------INVVRTKIKTFAAVAV 142
E K+R+LELNASDDRG I VVR +IK + +
Sbjct: 95 EEAKNRLLELNASDDRGKRKPNGVCLGSGETVRRGAPIKQDRNSIKVVRERIKQYTKTNI 154
Query: 143 GSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI----- 195
G+ G P +KI+ILDEAD MT+DAQ+ALRR ME +S+ TRF ICNY+
Sbjct: 155 AKGKINPETGREMPAWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHKIID 214
Query: 196 ---SRCT 199
SRC+
Sbjct: 215 PIFSRCS 221
>gi|156088043|ref|XP_001611428.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798682|gb|EDO07860.1| conserved hypothetical protein [Babesia bovis]
Length = 336
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 126/196 (64%), Gaps = 7/196 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ + PWVEKYRP + D+ + + + +E+ + PHM+F+GPPGTGKT+ ALAIA
Sbjct: 1 MKGNVPWVEKYRPASLDDIVFHTNAMTTMRHIVESYDMPHMIFHGPPGTGKTSAALAIAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILD 162
Q++GPE K RVLELNASD+RGINVVR +IKT+ + + S + + G P +K+IILD
Sbjct: 61 QIYGPEGMKERVLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGRVMPNFKMIILD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFD 222
EAD +T DAQ ALRR +E +S ++RF ICNY+ + ++S F F IS D
Sbjct: 121 EADMITPDAQAALRRIIENFSNISRFILICNYVHK-IIGPIYSRCSAFHF----KPISQD 175
Query: 223 KEYIRIIYASTLKFLE 238
+ R+ Y T + LE
Sbjct: 176 AQIERLRYICTAESLE 191
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 109/162 (67%), Gaps = 16/162 (9%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ QEEV + L+T N PHMLFYGPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASD+RGI +R ++K FA A +G PYK+IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGITTIRERVKEFARTAPMGKA---------PYKLIILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
DAQ ALRR ME Y+ VTRF I NY+SR + A+F F
Sbjct: 118 DAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRF 159
>gi|322697954|gb|EFY89728.1| activator 1 41 kDa subunit [Metarhizium acridum CQMa 102]
Length = 314
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 114/160 (71%), Gaps = 10/160 (6%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYGPPGTGKT+T LA+A +LFGPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 143 ---GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
G +R YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 61 PTPGYSKR---YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR-I 116
Query: 200 FSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEG 239
L S F F S LDQ + K I A + +G
Sbjct: 117 IDPLASRCSKFRFKS-LDQGNARKRLEEIASAEGVPLEDG 155
>gi|84998148|ref|XP_953795.1| replication factor C subunit (RPC2 ) [Theileria annulata]
gi|65304792|emb|CAI73117.1| replication factor C subunit (RPC2 homologue) , putative [Theileria
annulata]
Length = 336
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 113/165 (68%), Gaps = 3/165 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMF 212
T DAQ ALRR +E YS ++RF ICNY+ + ++S F F
Sbjct: 128 TADAQAALRRVIENYSSISRFILICNYLHK-IIGPIYSRCSVFHF 171
>gi|322705612|gb|EFY97196.1| activator 1 41 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 314
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 114/160 (71%), Gaps = 10/160 (6%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV---- 140
MLFYGPPGTGKT+T LA+A +LFGPE+ KSRVLELNASD+RGI++VR K+K FA +
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 141 -AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
A G ++ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 61 PAPGYSKK---YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR-I 116
Query: 200 FSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEG 239
L S F F S LDQ + K I A + +G
Sbjct: 117 IDPLASRCSKFRFKS-LDQGNARKRLEEIASAEGVPLEDG 155
>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
Length = 335
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 113/165 (68%), Gaps = 3/165 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKISDVIFQTQAVSIMEQIVETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMF 212
T DAQ ALRR +E YS ++RF ICNY+ + ++S F F
Sbjct: 128 TADAQAALRRVIENYSSISRFVLICNYLHK-IIGPIYSRCSVFHF 171
>gi|302925691|ref|XP_003054145.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735086|gb|EEU48432.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 314
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 104/133 (78%), Gaps = 3/133 (2%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A +L+GPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 144 -SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSA 202
S + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 61 PSPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR-IIDP 119
Query: 203 LFSFLLFFMFFSL 215
L S F F SL
Sbjct: 120 LASRCSKFRFKSL 132
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 109/162 (67%), Gaps = 16/162 (9%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ QEEV + L+T N PHMLFYGPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASD+RGI +R ++K FA A +G PYK++ILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGITTIRERVKEFARTAPMGKA---------PYKLVILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
DAQ ALRR ME Y+ VTRF I NY+SR + A+F F
Sbjct: 118 DAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRF 159
>gi|380471924|emb|CCF47039.1| replication factor C subunit 2 [Colletotrichum higginsianum]
Length = 315
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 104/133 (78%), Gaps = 3/133 (2%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A +L+GPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMMKSRVLELNASDERGISIVREKVKDFARMQLTN 60
Query: 144 -SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSA 202
+ + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 61 PTNDYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR-IIDP 119
Query: 203 LFSFLLFFMFFSL 215
L S F F SL
Sbjct: 120 LASRCSKFRFKSL 132
>gi|449017476|dbj|BAM80878.1| replication factor C subunit 4 [Cyanidioschyzon merolae strain 10D]
Length = 359
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/186 (50%), Positives = 119/186 (63%), Gaps = 18/186 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL----------ETANCPHMLFYGPPGTGK 95
++QPWVEKYRP+++ DV Q E +R L L + A+ PH+LFYGPPGTGK
Sbjct: 7 HATQPWVEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYGPPGTGK 66
Query: 96 TTTALAIAHQLF----GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
TTTALA+ +LF E ++RVLELNASD+RGI VVR KIK FA ++ +
Sbjct: 67 TTTALALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSI---EESVDA 123
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFM 211
P +KI+ILDEAD++T DAQ ALRRT+E +S+ TRF ICNY+SR L S F
Sbjct: 124 QVPGFKIVILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSR-VIPPLASRCAKFR 182
Query: 212 FFSLLD 217
F +L D
Sbjct: 183 FKALED 188
>gi|392867577|gb|EAS29182.2| DNA replication factor C subunit Rfc2 [Coccidioides immitis RS]
Length = 322
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 103/136 (75%), Gaps = 6/136 (4%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A LFGP+LY+SR+LELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSH 60
Query: 144 ----SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
+ R YPCPP+KIIILDEADSMT+DAQ+ALRRTME +S++TRF +CNY++R
Sbjct: 61 PPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTR-I 119
Query: 200 FSALFSFLLFFMFFSL 215
L S F F SL
Sbjct: 120 IDPLASRCSKFRFKSL 135
>gi|308159615|gb|EFO62141.1| Replication factor C, sub 2 [Giardia lamblia P15]
Length = 351
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 112/178 (62%), Gaps = 3/178 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + V HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPMSLDRVMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++IILDEAD
Sbjct: 62 GPRFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
++T ++Q ALRR +E +S+ TRF ICNY S+ + + S F F SL + D+
Sbjct: 122 ALTRESQAALRRIIEDFSETTRFCIICNYPSQ-IIAPIVSRCARFAFSSLPQSLIIDR 178
>gi|46108652|ref|XP_381384.1| hypothetical protein FG01208.1 [Gibberella zeae PH-1]
Length = 314
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/133 (63%), Positives = 104/133 (78%), Gaps = 3/133 (2%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA+A +L+GP++ KSRVLELNASD+RGI++VR K+K FA + + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 145 G--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSA 202
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++R
Sbjct: 61 PPPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR-IIDP 119
Query: 203 LFSFLLFFMFFSL 215
L S F F SL
Sbjct: 120 LASRCSKFRFKSL 132
>gi|17554730|ref|NP_498521.1| Protein RFC-4 [Caenorhabditis elegans]
gi|1703051|sp|P53016.1|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|351049703|emb|CCD63405.1| Protein RFC-4 [Caenorhabditis elegans]
Length = 334
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 109/162 (67%), Gaps = 7/162 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVL---K 118
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSR 160
>gi|403221343|dbj|BAM39476.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 336
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 113/166 (68%), Gaps = 4/166 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKLSDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRG-INVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADS 166
E + RVLELNASD+RG I+VVR +IKT+ + + + + P YKIIILDEAD
Sbjct: 68 EGMRERVLELNASDERGRIDVVRDRIKTYTRINISNNKINPETNRVMPNYKIIILDEADM 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMF 212
+T DAQ ALRR +E YS ++RF ICNY+ + ++S F F
Sbjct: 128 ITADAQAALRRVIENYSGISRFILICNYLHK-IIGPIYSRCSVFHF 172
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 119/178 (66%), Gaps = 10/178 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 6 PTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILAC 65
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGIN+VR +I +FA + G+ R G +K+IILD
Sbjct: 66 ARKLYTPAQFNSMVLEMNASDDRGINIVRGQILSFA--STGTMYRSG------FKLIILD 117
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQI 219
EAD+MT DAQNALRR +E Y+ RF ICNY+S+ AL S F F L +DQI
Sbjct: 118 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSK-IIPALQSRCTKFRFGPLSIDQI 174
>gi|238484697|ref|XP_002373587.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
gi|220701637|gb|EED57975.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
Length = 320
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 97/118 (82%), Gaps = 5/118 (4%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR K+K FA V +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSH 60
Query: 144 -SGQRRG---GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+G + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++R
Sbjct: 61 PTGVDKSYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTR 118
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 103/147 (70%), Gaps = 9/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QE++VR L +E N PHMLF GPPGTGKTT ALA+AH L+G E
Sbjct: 9 WAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+RTK+K FA R P P+K++ILDEAD+MT D
Sbjct: 68 KYRQYILELNASDERGIDVIRTKVKEFA--------RSRTPPTVPFKLVILDEADNMTAD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR ME YS TRF + N+ S+
Sbjct: 120 AQQALRRLMEMYSTTTRFILLANFPSK 146
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 15/172 (8%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
KM S+ PWVEKYRP ++ ++ E++V+ LT +E PH+LFYGPPGTGKTTT
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPP 155
LA A Q++ P S VLELNASD+RGI+VVR I FA A + G P
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTV---P 136
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY+ SRCT
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCT 188
>gi|159115639|ref|XP_001708042.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
gi|157436151|gb|EDO80368.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
Length = 351
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 112/178 (62%), Gaps = 3/178 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + + HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++IILDEAD
Sbjct: 62 GPRFWRARVSEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
++T ++Q ALRR +E +S+ TRF ICNY S+ + + S F F SL + D+
Sbjct: 122 ALTRESQAALRRIIEDFSETTRFCIICNYPSQ-IIAPIVSRCARFAFSSLPRPLIIDR 178
>gi|451927308|gb|AGF85186.1| replication factor C small subunit [Moumouvirus goulette]
Length = 369
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N++ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SIPWIEKYRPRRLQDIAQSENLIKLFKNSISKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSISNPDGTIIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T++AQ+ALR +E YS TRF FICNYI++ T
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKIT 157
>gi|339257864|ref|XP_003369118.1| replication factor C subunit 4 [Trichinella spiralis]
gi|316966678|gb|EFV51223.1| replication factor C subunit 4 [Trichinella spiralis]
Length = 357
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 119/203 (58%), Gaps = 28/203 (13%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVL--------------------------TNTLETA 80
S + + RPK V D+A+Q+EVV VL N L+
Sbjct: 5 SKELTITSSRPKIVDDIAYQDEVVAVLKKSLTSNDKLRLCLMILYFVEHLIRFANILDNY 64
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
P++LFYGPPGTGKT+ LA+ Q+FG E+Y+ RVLELNASD+RGI+V+R K+K F+
Sbjct: 65 FIPNLLFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQF 124
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTF 200
A S GG CPP K++ILDEADSMT+ AQ ALRRTME SK TRF ICNYIS C
Sbjct: 125 A-ASEITEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYIS-CII 182
Query: 201 SALFSFLLFFMFFSLLDQISFDK 223
+ S F F L +I ++
Sbjct: 183 EPITSRCAKFRFKPLTLEIQIER 205
>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 368
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 111/163 (68%), Gaps = 16/163 (9%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ S PWVEKYRPK +K++ E+++ +T ++ + PH+LFYGPPGTGKT+T A+A
Sbjct: 17 IHDSLPWVEKYRPKSLKELISHEDIIDTITKLIDKNSLPHLLFYGPPGTGKTSTIQAVAR 76
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+L+G Y VLELNASDDRGI+VVR +IK+FA GS G + +K+IILDEA
Sbjct: 77 KLYGDN-YSRMVLELNASDDRGIDVVREQIKSFA----GS---MGIFNTNQFKLIILDEA 128
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
DSMT AQ ALRR +ETY+K TRF ICNY+ SRCT
Sbjct: 129 DSMTNAAQTALRRVIETYTKTTRFCMICNYVGKLIPALQSRCT 171
>gi|253745639|gb|EET01440.1| Replication factor C, sub 2 [Giardia intestinalis ATCC 50581]
Length = 351
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 108/169 (63%), Gaps = 13/169 (7%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + + HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPLALDRIVHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLVHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++I+LDEAD
Sbjct: 62 GPRFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPEDVKALYPCPDFQVIVLDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCTFSALFSF 206
++T ++Q ALRR +E YS+ TRF +CNY +SRC A F+F
Sbjct: 122 ALTRESQAALRRIIEDYSETTRFCILCNYPSQIIAPIVSRC---ARFAF 167
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 107/151 (70%), Gaps = 9/151 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ WVEKYRPK + +V Q+E+++ L + ++ N PH+LF GPPGTGKT TA+A+A L
Sbjct: 2 ETEIWVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG E+++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEAD+
Sbjct: 62 FG-EVWRENFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEADA 112
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+T DAQ ALRRTME YSKV RF CNY+SR
Sbjct: 113 LTADAQAALRRTMEMYSKVCRFILSCNYVSR 143
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 122/197 (61%), Gaps = 22/197 (11%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 7 WAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDS 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA V S P+K+I+LDEAD+MT D
Sbjct: 67 -YEQFFLELNASDERGIDVIRNKVKEFARTMVSS--------SVPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSFLLF--------FMFFSLLD 217
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F F + +
Sbjct: 118 AQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEE 177
Query: 218 QISFDKEYIRIIYASTL 234
++ +D++ + IY T+
Sbjct: 178 KVEYDEKALETIYDVTM 194
>gi|115384904|ref|XP_001208999.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
gi|114196691|gb|EAU38391.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
Length = 319
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 95/118 (80%), Gaps = 5/118 (4%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAV 142
MLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR KIK FA ++
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARSQLSH 60
Query: 143 GSGQRR---GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SG YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 61 SSGMSEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 118
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 110/173 (63%), Gaps = 23/173 (13%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + S+ PWVEKYRP ++ ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA
Sbjct: 5 PAVVSNLPWVEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAA 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA--------AVAVGSGQRRGGYPCP 154
A +++ P S VLELNASD+RGI+VVR I FA A A S Q
Sbjct: 65 ARKMYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQ-------V 117
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
P+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY+ SRCT
Sbjct: 118 PFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCT 170
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 22/202 (10%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L+ W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H
Sbjct: 3 LEEEILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVH 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
L+G Y+ LELNASD+RGI+V+R K+K FA G P+K+++LDEA
Sbjct: 63 DLYGDN-YRQYFLELNASDERGIDVIRNKVKEFARTVAGGN--------VPFKVVLLDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF--------LLFFM 211
D+MT DAQ ALRRTME Y++ TRF CNY+S+ + +ALF F +
Sbjct: 114 DNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLA 173
Query: 212 FFSLLDQISFDKEYIRIIYAST 233
+ + +++ +D++ + IY T
Sbjct: 174 YIAKNEKVEYDQKALETIYDIT 195
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 107/152 (70%), Gaps = 11/152 (7%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ WVEKYRP+ +K+V QEEV++ L +E N PH+LF GPPGTGKT +A+A+A L
Sbjct: 4 EAEIWVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDL 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEAD 165
FG E ++ +E+NASD+RGI+VVR KIK FA A +G P+KII LDEAD
Sbjct: 64 FG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGDA---------PFKIIFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
++T DAQ ALRRTME YSK+ RF CNY+SR
Sbjct: 114 ALTPDAQAALRRTMEMYSKICRFILSCNYVSR 145
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 111/165 (67%), Gaps = 16/165 (9%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGI +VR +I +FA + G+ R G +K+IILD
Sbjct: 65 ARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFA--STGTMYRSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
EAD+MT+DAQNALRR +E Y+ RF ICNY+ SRCT
Sbjct: 117 EADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCT 161
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 111/165 (67%), Gaps = 16/165 (9%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGI +VR +I +FA + G+ R G +K+IILD
Sbjct: 65 ARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFA--STGTMYRSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
EAD+MT+DAQNALRR +E Y+ RF ICNY+ SRCT
Sbjct: 117 EADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCT 161
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSK 151
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSK 151
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 109/157 (69%), Gaps = 8/157 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M ++S+ PWVEKYRP ++ D+ EE++ + ++ PH+LFYGPPGTGKT+T L
Sbjct: 1 MDANVKSNLPWVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTIL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A A QL+ P+ + S VLELNASDDRGIN+VR +I FA+ +GG YK+II
Sbjct: 61 ACARQLYKPQSFGSMVLELNASDDRGINIVRGQILDFASTRTIF---KGG-----YKLII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEAD+MT DAQNALRR +E Y++ RF ICNY+S+
Sbjct: 113 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSK 149
>gi|371944797|gb|AEX62619.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 369
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N+ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SVPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTTIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T++AQ+ALR +E YS TRF FICNYI++ T
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKIT 157
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSK 151
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 121/191 (63%), Gaps = 11/191 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E VV L L PH+LFYGPPGTGKT+T LA+A +++GP
Sbjct: 30 PWVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYGP 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCP--PYKIIILDEAD 165
YKS VLELNASDDRGI+VVR +IK FA+ S Q +RGG +K++ILDEAD
Sbjct: 90 S-YKSMVLELNASDDRGIDVVRDQIKVFAS----SRQIFQRGGEENARSNFKLVILDEAD 144
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEY 225
+MT AQNALRR +E Y+ TRF + NY + AL S F FS L + + DK
Sbjct: 145 AMTNVAQNALRRVIEQYTTHTRFCILANYTHKLN-PALLSRCTRFR-FSPLPEAAIDKRI 202
Query: 226 IRIIYASTLKF 236
+++I A +K
Sbjct: 203 MQVIDAEKVKI 213
>gi|312377422|gb|EFR24254.1| hypothetical protein AND_11259 [Anopheles darlingi]
Length = 328
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 106/138 (76%), Gaps = 2/138 (1%)
Query: 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119
V+DV Q EVV VL +L TA+ P++L YGPPGTGKT+T LA A QLFG +++K R+LEL
Sbjct: 34 VEDVVEQAEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFG-DMFKERILEL 92
Query: 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
NASDDRGI V+R K+KTFA + SG R G PCPP+KI+ILDEAD+MT AQ ALRRTM
Sbjct: 93 NASDDRGIAVIRNKVKTFAQL-TASGTRADGKPCPPFKIVILDEADAMTHAAQAALRRTM 151
Query: 180 ETYSKVTRFFFICNYISR 197
E +K TRF +CNY+SR
Sbjct: 152 EKETKTTRFCLVCNYVSR 169
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 107/165 (64%), Gaps = 15/165 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP ++ ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA A ++
Sbjct: 9 SNLPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKM 68
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIILD 162
+ P S VLELNASD+RGI+VVR I FA A S + P+K++ILD
Sbjct: 69 YHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSV---PFKLVILD 125
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
EAD+MT+DAQNALRR +E Y+ RF ICNY+ SRCT
Sbjct: 126 EADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCT 170
>gi|441432472|ref|YP_007354514.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383552|gb|AGC02078.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 369
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N+ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SVPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTIIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T++AQ+ALR +E YS TRF FICNYI++ T
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKIT 157
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 119/178 (66%), Gaps = 10/178 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ +E++ + + L+ PH+LFYGPPGTGKT+T LA A +F P
Sbjct: 6 PWVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFSP 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
KS VLELNASDDRGI+VVR I++FA+ S R G +K+IILDEAD+MT+
Sbjct: 66 AEIKSMVLELNASDDRGIDVVRGPIQSFASTR--SIFRSG------FKLIILDEADAMTK 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQISFDKEYI 226
DAQNALRR +ETY+ RF ICNY+S+ AL S F F L ++Q+S ++I
Sbjct: 118 DAQNALRRVIETYTDNVRFCLICNYLSK-IIPALQSRCTRFRFGPLSMEQMSVRLQHI 174
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 103/158 (65%), Gaps = 17/158 (10%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + D+ Q+ VV L ++ N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGINV+R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFA--------RSRTPPEIPFKIVLLDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNY--------ISRCTF 200
AQ ALRR ME YS VTRF I NY SRC F
Sbjct: 120 AQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAF 157
>gi|311977902|ref|YP_003987022.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82050828|sp|Q5UQ72.1|RFCS4_MIMIV RecName: Full=Putative replication factor C small subunit L510;
Short=RFC small subunit L510; AltName: Full=Clamp loader
small subunit L510
gi|55417124|gb|AAV50774.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|308204876|gb|ADO18677.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061447|gb|AEJ34751.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|351737669|gb|AEQ60704.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257335|gb|EJN40943.1| putative replication factor C subunit [Acanthamoeba polyphaga
lentillevirus]
Length = 363
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK+++D+ + ++ + N+ + H LFYGPPGTGKT+ LA+ ++F
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIF 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E +++RV+E NASDDRGIN VR KI A V + G P YKIIILDEADSM
Sbjct: 66 -KEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T++AQ+ALR +E YS TRF FICNYI++ T
Sbjct: 125 TDEAQDALRVIIEQYSTATRFCFICNYITKIT 156
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 125/196 (63%), Gaps = 18/196 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +E+ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI VVR +IKTFA+ +GS R G +K+IIL
Sbjct: 99 IYGAENMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAA--FKLIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMF 212
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 157 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFR--FSPLKEQDI 214
Query: 213 FSLLDQISFDKEYIRI 228
SL+D++ ++E ++I
Sbjct: 215 RSLVDKV-IEEENVKI 229
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 105/149 (70%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ D+ +QEE+ + L + +E N PH+LF GPPGTGKTT ALA+AH+L+G +
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG-D 62
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI+V+R K+K FA A +G P+KI+ LDEAD++T
Sbjct: 63 AWRENFLELNASDERGIDVIRHKVKEFARAKPIGD---------VPFKIVFLDEADALTR 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME YS+ TRF CNY S+
Sbjct: 114 DAQQALRRIMEKYSQSTRFILSCNYFSKI 142
>gi|371943985|gb|AEX61813.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701544|gb|AFX92706.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 364
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
MT++AQ+ALR +E YS TRF FICNYIS+ T A+ S F L D+ DK
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKIT-DAIKSRCTAIYFKKLDDECMIDK 181
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP + D+ EE++ + ++ PH+LFYGPPGTGKT+T LA A Q
Sbjct: 6 KSNLPWVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQ 65
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEA 164
L+ P+ + VLELNASDDRGIN+VR +I FA+ + SG YK+IILDEA
Sbjct: 66 LYKPQSFNQMVLELNASDDRGINIVRNQILNFASTRTIFSGG---------YKLIILDEA 116
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLL-DQI 219
D+MT DAQNALRR +E Y+ RF ICNY+S+ AL S F F L DQI
Sbjct: 117 DAMTNDAQNALRRIIEKYTDNVRFCIICNYLSK-IIPALQSRCTRFRFAPLSPDQI 171
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 105/160 (65%), Gaps = 15/160 (9%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK + D+ E++ + +T ++ PH+LFYGPPGTGKT+T AIA +L+
Sbjct: 23 SLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y VLELNASDDRGI+VVR +IKTFA+ PYK+IILDEADSM
Sbjct: 83 GDN-YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTT------VPYKLIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
T AQ ALRR +E Y+K TRF +CNY+ SRCT
Sbjct: 136 TNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCT 175
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 118/178 (66%), Gaps = 10/178 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ + S VLE+NASDDRGIN+VR +I +FA + G+ + G +K+IILD
Sbjct: 65 ARKLYTSAQFNSMVLEMNASDDRGINIVRGQILSFA--STGTMYKSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQI 219
EAD+MT DAQNALRR +E Y+ RF ICNY+S+ AL S F F L +DQI
Sbjct: 117 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSK-IIPALQSRCTKFRFGPLSIDQI 173
>gi|448825607|ref|YP_007418538.1| putative replication factor C small subunit [Megavirus lba]
gi|444236792|gb|AGD92562.1| putative replication factor C small subunit [Megavirus lba]
Length = 364
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
MT++AQ+ALR +E YS TRF FICNYIS+ T A+ S F L D+ DK
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKIT-DAIKSRCTAIYFKKLDDECMIDK 181
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 108/153 (70%), Gaps = 11/153 (7%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + WVEKYRP+ + ++ QEE+V+ L ++ N PH+LF GPPGTGKTT ALA+AH L
Sbjct: 2 SEELWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEAD 165
+G E ++ LELNASD+RGI+V+R++IK +A + +G P+K++ILDEAD
Sbjct: 62 YG-ESWRDNTLELNASDERGIDVIRSRIKDYARTLPIGD---------VPFKLVILDEAD 111
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
+MT DAQ ALRRTME +S+ TRF I NY S+
Sbjct: 112 NMTGDAQQALRRTMELFSRNTRFILIANYASKI 144
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 103/161 (63%), Gaps = 8/161 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA A ++
Sbjct: 9 SNLPWVEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVLAAARKM 68
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+ P S VLELNASD+RGI+VVR I TFA P+K++ILDEAD+
Sbjct: 69 YSPAKMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLPFKLVILDEADA 128
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
MT DAQNALRR +E Y+ RF ICNY+ SRCT
Sbjct: 129 MTRDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCT 169
>gi|224158698|ref|XP_002192375.1| PREDICTED: replication factor C subunit 4-like, partial
[Taeniopygia guttata]
Length = 294
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 104/153 (67%), Gaps = 9/153 (5%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
P++LFYGPPGTGKT+T LA A +LFGP+L++ RVLELNASD+RGI V+R K+K FA +
Sbjct: 2 PNLLFYGPPGTGKTSTILAAATELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQL-T 60
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSA 202
SG G CPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNYISR
Sbjct: 61 ASGSHSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISR-IIEP 119
Query: 203 LFSFLLFFMFFSLLDQIS-------FDKEYIRI 228
L S F F L D I +KE+++I
Sbjct: 120 LTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKI 152
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 102/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ ++ + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTISRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSK 151
>gi|429863915|gb|ELA38322.1| replication factor c subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 389
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 128/201 (63%), Gaps = 18/201 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPVNLNDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ +G + GG YK+IIL
Sbjct: 99 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPAAKAGGMAS--YKLIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMF 212
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 157 DEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFR--FSPLKERDI 214
Query: 213 FSLLDQISFDKEYIRIIYAST 233
L+D++ ++E+++I+ +T
Sbjct: 215 RVLVDKV-IEEEHVKIMSEAT 234
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 15/195 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 37 QDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARR 96
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + Q G P +K+IILD
Sbjct: 97 IYGTKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILD 156
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMFF 213
EAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 157 EADAMTSTAQMALRRIMERYTANTRFCVIANYTHKLSPALLSRCTRFR--FSPLKEVDIR 214
Query: 214 SLLDQISFDKEYIRI 228
+L+DQ+ +KE ++I
Sbjct: 215 TLVDQV-IEKEGVKI 228
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++D+ EE+V + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 11 PWVEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTSTILACARQLYTP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 AQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y++ RF ICNY+S+
Sbjct: 123 DAQNALRRIIEKYTENVRFCVICNYLSK 150
>gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
Length = 327
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 97/148 (65%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L +E N PHM+ G PG GKTT+ +A++L GP
Sbjct: 12 PWVEKYRPHKLDDIVGNEETVERLKLLVEDGNMPHMIISGLPGIGKTTSIHCLAYELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY+ LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYQQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPAGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSK 152
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 106/153 (69%), Gaps = 9/153 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
D++T DAQ ALRRTME YSK RF CNY+SR
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144
>gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei]
gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei]
Length = 362
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 104/158 (65%), Gaps = 11/158 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+AHQ+EVV +L L+ + PH+LFYGPPGTGKT+TALA QLF
Sbjct: 17 WTEKYRPKTLDDIAHQDEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCRQLFPRN 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP-------CPP----YKII 159
+++ RVL+LNASD+RGI+VVR K+ F + + + C KII
Sbjct: 77 IFQDRVLDLNASDERGISVVRQKVSRFIVLLSNHSLQIQSFSKTTLSTNCKEDVLKLKII 136
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR
Sbjct: 137 ILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSR 174
>gi|302502708|ref|XP_003013315.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
gi|291176878|gb|EFE32675.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
Length = 326
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 92/117 (78%), Gaps = 4/117 (3%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYG PGTGKT+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLFQ 60
Query: 143 --GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
R YPCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 117
>gi|302665246|ref|XP_003024235.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
gi|291188282|gb|EFE43624.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
Length = 336
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 92/117 (78%), Gaps = 4/117 (3%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYG PGTGKT+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQ 60
Query: 143 --GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
R YPCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 117
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 101/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y++ RF ICNY+S+
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSK 151
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 111/162 (68%), Gaps = 16/162 (9%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q ++V L + ++ N PH+LF GPPGTGKTT+ALA+ H L+G E
Sbjct: 7 WAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYG-E 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASD+RGI+V+R K+K FA V GS P+K ++LDEAD+MT
Sbjct: 66 NYEQYLLELNASDERGIDVIRNKVKEFARTVTPGS---------VPFKTVLLDEADNMTA 116
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
DAQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 117 DAQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRF 158
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 102/149 (68%), Gaps = 8/149 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + D+ +E++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 11 KPWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLFYGPPGTGKTSTILACARQLYP 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P L+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 PALFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 123 NDAQNALRRIIEKYTDNVRFCIICNYLSK 151
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 101/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y++ RF ICNY+S+
Sbjct: 124 DAQNALRRIIEKYTENVRFCVICNYLSK 151
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 101/147 (68%), Gaps = 9/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +QEE+VR L +E N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 10 WAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFG-E 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI +RTK+K FA R P P+KI++LDEAD+MT D
Sbjct: 69 NYRQYMLELNASDERGIETIRTKVKEFA--------RSRTPPGIPFKIVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR ME Y+ TRF I NY S+
Sbjct: 121 AQQALRRLMEMYTASTRFILIANYPSK 147
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE+++ + ++ PH+L YGPPGTGKT+T LA A +L+ P
Sbjct: 13 PWVEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTSTILACAKKLYTP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I +FA + G+ R G YK+IILDEAD+MT
Sbjct: 73 QQFNSMVLELNASDDRGIGIVRGQILSFA--STGTMYRSG------YKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 125 DAQNALRRIIEKYTDNVRFCIICNYLSK 152
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 106/153 (69%), Gaps = 9/153 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
D++T DAQ ALRRTME YSK RF CNY+SR
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144
>gi|363539784|ref|YP_004894673.1| mg622 gene product [Megavirus chiliensis]
gi|350610949|gb|AEQ32393.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 364
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
MT++AQ+ALR +E YS TRF FICNYIS+ T A+ S F L D DK
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKIT-DAIKSRCTAIYFKKLDDGCMIDK 181
>gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1]
gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG]
Length = 398
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 29/196 (14%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK+ ++ A + PWVEKYRP+++ DV ++++R + N + PH+LF+
Sbjct: 18 APEKASSQLPSAHA---DRALPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPHLLFH 74
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS---- 144
GPPGTGKT+T LA+A + +G + ++ VLELNASDDRGIN VR +IKTFA + S
Sbjct: 75 GPPGTGKTSTILAVAKEFYGSAV-RTHVLELNASDDRGINTVREQIKTFAETSSTSFQQN 133
Query: 145 ---------------------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183
GQ + G P K+IILDEAD MT AQNALRR ME Y+
Sbjct: 134 RLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYA 193
Query: 184 KVTRFFFICNYISRCT 199
+ RF ICN++++ T
Sbjct: 194 RNVRFCLICNFVNKIT 209
>gi|380489807|emb|CCF36452.1| replication factor C [Colletotrichum higginsianum]
Length = 392
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 129/202 (63%), Gaps = 17/202 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVG-SGQRRGGYPCPPYKIII 160
++G E + VLELNASDDRGI+VVR +IKTFA+ +G S + GG YK+II
Sbjct: 99 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGSMASYKLII 158
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFM 211
LDEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 159 LDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFR--FSPLKERD 216
Query: 212 FFSLLDQISFDKEYIRIIYAST 233
L+D++ ++E+++I+ +T
Sbjct: 217 IRVLVDKV-VEEEHVKILPEAT 237
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 103/148 (69%), Gaps = 11/148 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++++ +QEE+V L +E N PH+LF GPPGTGKTT ALA+AH L+G E
Sbjct: 5 WAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGDE 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP-PYKIIILDEADSMTE 169
++ +LELNASD+RGI V+R+K+K FA R P P+KI+ILDEAD+MT
Sbjct: 65 -WRRYLLELNASDERGIAVIRSKVKEFA---------RSKLPGDIPFKIVILDEADNMTA 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ ALRR ME Y + TRF I NY S+
Sbjct: 115 DAQQALRRIMEMYVETTRFILIANYPSK 142
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 98/144 (68%), Gaps = 7/144 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++ V+ L + N PHM+ G PG GKTT LA+AH L GP
Sbjct: 10 PWVEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLALAHTLLGP 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+++K VLELNASD+RGI+VVR +IK+FA Q++ P +KI+ILDEADSMT
Sbjct: 70 DVFKEAVLELNASDERGIDVVRNRIKSFA-------QKKIALPPGRHKIVILDEADSMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACN 146
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 106/160 (66%), Gaps = 20/160 (12%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK + D+ ++++ +NTL PH+LFYGPPGTGKT+T AIA +L+
Sbjct: 26 SLPWVEKYRPKSINDLIAHDDIIATKSNTL-----PHLLFYGPPGTGKTSTIQAIARKLY 80
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E Y VLELNASDDRGI+VVR +IKTFA+ PYK+IILDEADSM
Sbjct: 81 G-ENYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNS------TVPYKLIILDEADSM 133
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
T AQ ALRR +E Y+K TRF +CNY+ SRCT
Sbjct: 134 TNIAQTALRRVIEKYTKTTRFCIVCNYVVKIIPALQSRCT 173
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 101/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTITRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSS 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y++ RF ICNY+S+
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSK 151
>gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis]
gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis]
Length = 333
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 102/149 (68%), Gaps = 8/149 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + D+ +E++ + + PH+L+YGPPGTGKT+T LA A QL+
Sbjct: 11 KPWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLYYGPPGTGKTSTILACARQLYP 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P L+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 PALFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 123 NDAQNALRRIIEKYTDNVRFCIICNYLSK 151
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 106/161 (65%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + S P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPSN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRF 161
>gi|406863129|gb|EKD16177.1| activator 1 subunit 3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 395
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 13/184 (7%)
Query: 29 SPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
S + + + KR A PV + S PWVEKYRP ++DV+ ++++ +T ++T PH+
Sbjct: 23 SSDNTNSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVSGHQDILATITKFVDTNRLPHL 82
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VG 143
L YGPPGTGKT+T LA+A Q++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 83 LLYGPPGTGKTSTILALARQIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFT 142
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------I 195
+ P YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +
Sbjct: 143 MNKTSTSASMPTYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALL 202
Query: 196 SRCT 199
SRCT
Sbjct: 203 SRCT 206
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 104/150 (69%), Gaps = 12/150 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPKQ+ D+ ++++ + + PH+LFYGPPGTGKT+T LA A +L+ P
Sbjct: 8 PWVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACAKELYTP 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGINVVR +I +FA+ SG +K+IILDEAD+M
Sbjct: 68 QQFNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSG----------FKLIILDEADAM 117
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRR +E +++ RF ICNY+S+
Sbjct: 118 TNDAQNALRRVIEKFTENVRFCLICNYMSK 147
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 99/148 (66%), Gaps = 9/148 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++ EE+ L ++ N PH+LFYGPPGTGKTTTAL +A +L+G E
Sbjct: 8 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGINV+R ++K FA A G P+K+++LDEAD+MT D
Sbjct: 67 RWRENTLELNASDERGINVIRERVKEFARTAPAGG--------APFKLVVLDEADNMTSD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC 198
AQ ALRR ME Y+ TRF + NY+SR
Sbjct: 119 AQQALRRIMEMYAATTRFVLLANYVSRI 146
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 118/192 (61%), Gaps = 11/192 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ ++VV L + N P+++F GPPGTGKTT+ LA+AH+L GP
Sbjct: 17 PWVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGKTTSILALAHELLGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNASDDRGI+VVR KIK FA Q++ P +K+++LDEADSMT
Sbjct: 77 N-FKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVLLDEADSMTA 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF CN S+ + S F L D D+ +R++
Sbjct: 129 GAQQALRRTMEIYSNTTRFALACNLSSK-IIEPIQSRCAIVRFSRLSDSEILDR-LLRVV 186
Query: 230 YASTLKFL-EGF 240
A + ++ EG
Sbjct: 187 EAEKVPYVPEGL 198
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 106/162 (65%), Gaps = 8/162 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 42 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP+ + VLELNASDDRGI VVR +IKTFA+ YK+IILDEAD
Sbjct: 102 IYGPKNMRQMVLELNASDDRGIEVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEAD 161
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 162 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCT 203
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 107/158 (67%), Gaps = 16/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ +++++ + ++ PH+LFYGPPGTGKT+T LA A Q++ P
Sbjct: 11 PWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I +FA+ R + P K+IILDEAD+MT
Sbjct: 71 QQFSSMVLELNASDDRGIGIVRGQILSFAST-------RTIFKAGP-KLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
DAQNALRR +E Y++ RF ICNY+ SRCT
Sbjct: 123 DAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCT 160
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 111/158 (70%), Gaps = 8/158 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M LQ S PWVEKYRP + DVA ++++ + PH+L YGPPGTGKT+T L
Sbjct: 1 MTQELQRSGPWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTIL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKII 159
A+A +L+GP+ +++ +LELNASDDRGI+VVR +I+ FA+ ++ G++ K+I
Sbjct: 61 AVARKLYGPQ-FQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKAN------VKLI 113
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEAD+MT+DAQ +LRR +E Y+K TRF ICNY+S+
Sbjct: 114 ILDEADAMTKDAQFSLRRIIEKYTKNTRFCLICNYVSK 151
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 114/167 (68%), Gaps = 13/167 (7%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ + + PWVEKYRP+ + +V Q+++V + +ET PH+LFYGPPGTGKT+T +
Sbjct: 1 MSDKYRDNLPWVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIV 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+A +++GP YK+ VLELNASDDRGI+VVR +IK+FA+ + Q P +K+II
Sbjct: 61 ALAREIYGPN-YKNMVLELNASDDRGIDVVRNQIKSFAS----TRQIFTSSSSPQFKLII 115
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
LDEAD+MT AQN+LRR +E Y+K RF + NY ISRCT
Sbjct: 116 LDEADAMTSVAQNSLRRIIEKYTKNCRFCILANYSHKLNPALISRCT 162
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 111/166 (66%), Gaps = 19/166 (11%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P Q + PWVEKYRPK + DV ++++ L + T PHMLFYGPPGTGKT+T LA
Sbjct: 14 PETQDTLPWVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILAC 73
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIIL 161
A++++GP ++++V+ELNASDDRGI+VVR +IK+FA+ + S +K+IIL
Sbjct: 74 ANRIYGPN-FRNQVMELNASDDRGIDVVREQIKSFASTKQIFSS---------AFKLIIL 123
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
DE D+MT AQNALRR +E Y++ RF ICNYI SRCT
Sbjct: 124 DETDAMTLAAQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRCT 169
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 105/161 (65%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YTEYFLELNASDERGIDVIRNKVKEFARTVIPGD--------IPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRF 161
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 102/150 (68%), Gaps = 9/150 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRPK + ++ Q+E+V+ L +E + PH+LF GPPG GKTT AL +A LF
Sbjct: 2 DKPWVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGI+V+RTK+K FA R P+KII LDE+D++
Sbjct: 62 G-ENWRENFLELNASDERGIDVIRTKVKDFA--------RTKPIGDVPFKIIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS V RF CNY S+
Sbjct: 113 TPDAQNALRRTMEKYSDVCRFILSCNYPSK 142
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 98/149 (65%), Gaps = 7/149 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRPK + +V +VV L + + PH+L GPPG GKTT L +A QL G
Sbjct: 3 EPWVEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E + VLELNASDDRGI+V+R+K+KTFA Q++ P +KI+ILDEADSMT
Sbjct: 63 EEWFSQAVLELNASDDRGIDVIRSKVKTFA-------QQKMSLPSGKHKIVILDEADSMT 115
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
E AQ ALRRTME Y+ TRF CN S+
Sbjct: 116 EGAQQALRRTMEIYATTTRFALACNTPSK 144
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 117/186 (62%), Gaps = 10/186 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + + E++ ++ + + PH+LFYGPPGTGKT+T AIA +L+G
Sbjct: 21 PWVEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y VLELNASDDRGI+VVR +IKTFA+ + PYK+IILDEADSMT
Sbjct: 80 ESYSRMVLELNASDDRGIDVVREQIKTFASSMF-------MFSNYPYKLIILDEADSMTN 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRR +E Y++ TRF ICNY+S+ AL S F FS L + + K II
Sbjct: 133 PAQTALRRVIEKYTRTTRFCMICNYVSK-ILPALQSRCTRFR-FSPLPRSAITKRMKEII 190
Query: 230 YASTLK 235
+LK
Sbjct: 191 ECESLK 196
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 107/162 (66%), Gaps = 8/162 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 43 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + + VLELNASDDRGI+VVR +IKTFA+ + YK+IILDEAD
Sbjct: 103 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEAD 162
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 163 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCT 204
>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
Length = 387
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 129/221 (58%), Gaps = 13/221 (5%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
SS +K + K + + PWVEKYRP + DV+ E+++ + ++T PH+LF
Sbjct: 22 SSGQKGKKLSKANLPVSAGDTLPWVEKYRPDTLNDVSGHEDILTTINKFVQTNRLPHLLF 81
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSG 145
YGPPGTGKT+T LA+A ++G + +VLELNASDDRGI VVR +IKTFA+ G+
Sbjct: 82 YGPPGTGKTSTILALARHIYGAHNIRQQVLELNASDDRGIEVVREQIKTFASTKQIFGAS 141
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISR 197
+ G +K+IILDEAD+MT AQNALRR ME Y+ TRF I NY +SR
Sbjct: 142 TKTDG-ELGSFKLIILDEADAMTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSR 200
Query: 198 CTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLE 238
CT FS L +D + D E ++I ++ L+
Sbjct: 201 CT-RFRFSPLPIDALRRRVDHV-IDAEKVKITPSAVDALLQ 239
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 107/155 (69%), Gaps = 8/155 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P++ ++ PWVEKYRPK++ D+ E++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 5 PMISTNLPWVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ + S VLE+NASDDRGI +VR +I FA + G+ + G +K+IILD
Sbjct: 65 ARKLYTAGQFNSMVLEMNASDDRGIGIVRGQILNFA--STGTLYKSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EAD+MT DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 117 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSK 151
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 113/167 (67%), Gaps = 13/167 (7%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M + + PWVEKYRP+ + +V Q+++V + +ET PH+LFYGPPGTGKT+T +
Sbjct: 1 MTDKYRDNLPWVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTII 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+A +++GP YK+ VLELNASDDRGI+VVR +IK+FA+ + Q P +K+II
Sbjct: 61 ALAREIYGPH-YKNMVLELNASDDRGIDVVRNQIKSFAS----TRQIFTSSSSPQFKLII 115
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
LDEAD+MT AQN+LRR +E Y+K RF + NY ISRCT
Sbjct: 116 LDEADAMTSVAQNSLRRIIERYTKNCRFCILANYSHKLNPALISRCT 162
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 124/195 (63%), Gaps = 15/195 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 38 QDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARR 97
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + Q G P +K+IILD
Sbjct: 98 IYGTKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILD 157
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMFF 213
EAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 158 EADAMTSTAQMALRRIMERYTSNTRFCVIANYTHKLSPALLSRCTRFR--FSPLKEVDIR 215
Query: 214 SLLDQISFDKEYIRI 228
+L+D++ + E +R+
Sbjct: 216 TLVDKV-IENEGVRM 229
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 107/162 (66%), Gaps = 8/162 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 43 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + + VLELNASDDRGI+VVR +IKTFA+ + YK+IILDEAD
Sbjct: 103 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEAD 162
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 163 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCT 204
>gi|340505649|gb|EGR31962.1| replication factor c subunit, putative [Ichthyophthirius
multifiliis]
Length = 359
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 101/149 (67%), Gaps = 8/149 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFG 108
PWVEKYRP +KD+ E +V +T + N P++LFYGPPGTGKT+T +AIA QL+G
Sbjct: 20 PWVEKYRPDTLKDLISHEFIVMTITKFINEQNKLPNLLFYGPPGTGKTSTIVAIAKQLYG 79
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
YK VLELNASDDRGINVVR +IKTFA A S +G K+IILDEAD MT
Sbjct: 80 NS-YKQMVLELNASDDRGINVVRDQIKTFAGTANFSAAGKGT------KLIILDEADQMT 132
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR +E YS RF ICNY+S+
Sbjct: 133 NQAQFALRRIIEKYSNNARFCLICNYVSK 161
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 119/182 (65%), Gaps = 10/182 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PWVEKYRP ++ D+ E+++ + + PH+LFYGPPGTGKT+T LA A Q
Sbjct: 8 RTNLPWVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQ 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP+ + S VLELNASDDRGI +VR +I FA+ S + G +K+IILDEAD
Sbjct: 68 IYGPKEFGSMVLELNASDDRGIGIVRGEILNFASTK--SIFKSG------FKLIILDEAD 119
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQISFDKE 224
+MT DAQNALRR +E +++ RF ICNY+S+ AL S F F L L Q+S E
Sbjct: 120 AMTNDAQNALRRVIEKFTENARFCLICNYLSK-IIPALQSRCTRFRFGPLSLSQMSPRIE 178
Query: 225 YI 226
Y+
Sbjct: 179 YV 180
>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
Length = 389
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 126/196 (64%), Gaps = 18/196 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ ++G+ + G +K+IIL
Sbjct: 100 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGASTSKTGLAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMF 212
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFR--FSPLKERDI 215
Query: 213 FSLLDQISFDKEYIRI 228
L+D++ D+E+I+I
Sbjct: 216 RVLVDKV-IDEEHIKI 230
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 106/150 (70%), Gaps = 12/150 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPKQ+ ++ ++++ + ++ PH+LFYGPPGTGKT+T LA+A Q++ P
Sbjct: 17 PWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVAKQIYSP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR +I +FA+ SG YKI+ILDEAD+M
Sbjct: 77 KEFNSMVLELNASDDRGIGIVRGQILSFASTRTIFKSG----------YKIVILDEADAM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 127 TRDAQNALRRVIEKFTENTRFCIICNYLSK 156
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 106/161 (65%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +Q+E+V L ++ N PH+LF GPPGTGKTT ALA+ L+G
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA + P+K+I+LDEAD+MT D
Sbjct: 67 -YRQYFLELNASDERGIDVIRNKVKEFARTVASNN--------VPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRF 158
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 120/172 (69%), Gaps = 11/172 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 23 PWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +++ VLELNASDDRGI+VVR +IK+FA+ +V S +GG +K+I+LDEAD+MT
Sbjct: 83 Q-FRNSVLELNASDDRGIDVVREQIKSFASTKSVFSS--KGG-----FKLIVLDEADAMT 134
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQI 219
+ AQ ALRR +E Y+K RF ICNY+++ A+ S F F L LDQ+
Sbjct: 135 QAAQGALRRVIEQYTKNVRFCIICNYVNK-IIPAIQSRCTRFRFNPLELDQV 185
>gi|401403730|ref|XP_003881552.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
gi|325115965|emb|CBZ51519.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
Length = 403
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 137/245 (55%), Gaps = 36/245 (14%)
Query: 25 TTQSSPEKSE--DEVKRKMAP--VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
T SP +E + K+ P + + + PWVEKYRP+++ DV ++++R + + +E
Sbjct: 8 TNSDSPRSAEASERPASKLPPHGLSERALPWVEKYRPERLDDVLAHDDIIRTIRHYVEKG 67
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-- 138
PH+LF+GPPGTGKT+T LA+A + +G + ++ VLELNASDDRGIN VR +IKTFA
Sbjct: 68 QLPHLLFHGPPGTGKTSTILAVAKEFYGSAV-RTHVLELNASDDRGINTVREQIKTFAET 126
Query: 139 ---------------------------AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
A ++ Q + G P K+IILDEAD MT A
Sbjct: 127 SSTSFHGQGRLMFGKPAAPTASAEKEEASSLAQSQEKRGGAGPSLKLIILDEADQMTNAA 186
Query: 172 QNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYA 231
QNALRR ME Y++ RF ICN+I++ T A+ S F F+ + +S ++ +I
Sbjct: 187 QNALRRIMEAYARNVRFCLICNFINKIT-PAIQSRCTGFR-FTPVSSLSLKQKAAQIAEE 244
Query: 232 STLKF 236
T+K
Sbjct: 245 ETMKL 249
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 119/172 (69%), Gaps = 11/172 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 24 PWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +++ VLELNASDDRGI VVR +IK+FA+ +V S +GG +K+I+LDEAD+MT
Sbjct: 84 Q-FRNSVLELNASDDRGIEVVREQIKSFASTKSVFSS--KGG-----FKLIVLDEADAMT 135
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQI 219
+ AQ ALRR +E Y+K RF ICNY+++ A+ S F F L LDQ+
Sbjct: 136 QAAQGALRRVIEQYTKNVRFCIICNYVNK-IIPAIQSRCTRFRFNPLELDQV 186
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 118/184 (64%), Gaps = 11/184 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S PWVEKYRP ++ DV E+++ + ++ PH+LFYGPPGTGKT+T LAIA +
Sbjct: 11 KSDLPWVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKK 70
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G +K VLELNASDDRGI+VVR +IK+FA Q R + +K+IILDEAD
Sbjct: 71 IYGGN-WKRNVLELNASDDRGIDVVRDQIKSFA-------QTRTLFS-DGFKLIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEY 225
MT+ AQ ALRR +E Y+ TRF ICNY+++ T A+ S F FS L DK
Sbjct: 122 LMTQQAQGALRRIIEHYTPTTRFCIICNYVNKIT-PAIMSRCTRFR-FSPLPYAHLDKRL 179
Query: 226 IRII 229
+ +I
Sbjct: 180 VEVI 183
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 105/161 (65%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPGN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRF 161
>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 398
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 118/192 (61%), Gaps = 17/192 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A Q++G
Sbjct: 44 PWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGV 103
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIIILDEA 164
+ + VLELNASDDRGI+VVR +IKTFA+ GQ G +K+IILDEA
Sbjct: 104 KNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQ--AGSKLGAFKLIILDEA 161
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFS--------LL 216
D+MT AQ ALRR ME Y+ TRF I NY + T AL S F F L+
Sbjct: 162 DAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLT-PALLSRCTRFRFSPLKEQDIRVLV 220
Query: 217 DQISFDKEYIRI 228
DQ+ +KE +RI
Sbjct: 221 DQV-IEKEQVRI 231
>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 393
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 25/217 (11%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
+FG K GK + N P ++ED S PWVEKYRP + DV
Sbjct: 20 SFGGDQKKGKRSAANL----------PVEAED------------SLPWVEKYRPNSLDDV 57
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNASD
Sbjct: 58 EGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 117
Query: 124 DRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181
DRGI+VVR +IKTF++ + R G +K+IILDEAD+MT AQ ALRR ME
Sbjct: 118 DRGIDVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILDEADAMTATAQMALRRIMEK 177
Query: 182 YSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
Y+ TRF I NY + + AL S F F L DQ
Sbjct: 178 YTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKDQ 213
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 118/192 (61%), Gaps = 17/192 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A Q++G
Sbjct: 44 PWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGV 103
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIIILDEA 164
+ + VLELNASDDRGI+VVR +IKTFA+ GQ G +K+IILDEA
Sbjct: 104 KNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQ--AGSKLGAFKLIILDEA 161
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFS--------LL 216
D+MT AQ ALRR ME Y+ TRF I NY + T AL S F F L+
Sbjct: 162 DAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLT-PALLSRCTRFRFSPLKEQDIRVLV 220
Query: 217 DQISFDKEYIRI 228
DQ+ +KE +RI
Sbjct: 221 DQV-IEKEQVRI 231
>gi|408403343|ref|YP_006861326.1| replication factor C small subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363939|gb|AFU57669.1| replication factor C small subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 328
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ +V +Q+E+++ ++N +++ + PHMLF GP G GKTTTAL IA +L G E
Sbjct: 13 WSEKYRPKKLAEVVNQKEIIKGISNMIKSPDIPHMLFSGPAGVGKTTTALCIAMELLGEE 72
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K LELNASD+RGI +VR ++K FAA +G + G P KIIILDEAD MT +
Sbjct: 73 -WKKNTLELNASDERGIKMVRERVKEFAASIKLAGDKEFGTP----KIIILDEADEMTSE 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR +E ++ TRF ICNY+S+
Sbjct: 128 AQTALRRIIEDSARTTRFIIICNYLSQ 154
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 17/166 (10%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP + PWVEKYRPK + DVA +E++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 7 APSIIDDAPWVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A Q++G L +S VLELNASDDRGI +VR +I FA+ + +K++IL
Sbjct: 67 VARQMYGASL-RSMVLELNASDDRGIGIVREQIVDFASTKTMFSNK--------FKLVIL 117
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
DE D+MT+DAQ ALRR +E Y++ TRF ICNY+ SRCT
Sbjct: 118 DECDAMTKDAQAALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCT 163
>gi|408397619|gb|EKJ76759.1| hypothetical protein FPSE_02945 [Fusarium pseudograminearum CS3096]
Length = 390
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 108/166 (65%), Gaps = 13/166 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ ++G G R G +K+IIL
Sbjct: 99 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLG-GASRSGNAMAGFKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCT 203
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 106/166 (63%), Gaps = 9/166 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P S+ PWVEKYRP + DV EE++ + + + PH+LFYGPPGTGKTTT A
Sbjct: 12 PAKNSTLPWVEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPPGTGKTTTIKAC 71
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR-GGYPCPPYKIIIL 161
AH LFG E ++ VLE+NASDDRGI+VVR +++ FA+ + Q G +K++IL
Sbjct: 72 AHHLFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQTVTNFKLVIL 131
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
DEAD M+ DAQ ALRR +E ++K RF +CN+I SRCT
Sbjct: 132 DEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCT 177
>gi|320163905|gb|EFW40804.1| DNA replication factor C subunit Rfc4 [Capsaspora owczarzaki ATCC
30864]
Length = 366
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
QS PWVEKYRP +KDV E+ V L E N P+++ G PGTGKTT+ L +AHQ
Sbjct: 48 QSEMPWVEKYRPILLKDVVGNEDTVARLQIIAEEGNMPNIIIAGQPGTGKTTSILCLAHQ 107
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L GP YK+ VLELNASDDRGI+VVR IK FA Q++ P K+IILDEAD
Sbjct: 108 LLGPA-YKNAVLELNASDDRGIDVVRNDIKMFA-------QKKVTLPPGRQKVIILDEAD 159
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICN 193
SMTE AQ ALRRTME YS TRF CN
Sbjct: 160 SMTEAAQQALRRTMEIYSATTRFALACN 187
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 113/169 (66%), Gaps = 13/169 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ ++++ + ++ PH+LFYGPPGTGKTTT LA+A Q++ P
Sbjct: 13 PWVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAVAKQIYAP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR +I +FA+ SG +K++ILDEAD+M
Sbjct: 73 KEFNSMVLELNASDDRGIGIVRDRILSFASTRTLFKSG----------FKLVILDEADAM 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLL 216
T DAQNALRR +E +++ TRF ICNY+S+ AL S F F LL
Sbjct: 123 TNDAQNALRRVIEKFTENTRFCIICNYLSK-IIPALQSRCTRFRFGPLL 170
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 128/201 (63%), Gaps = 18/201 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPATLADVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ ++ + R G +K+IIL
Sbjct: 100 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMSASATRSGI--ANFKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMF 212
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFR--FSPLKEQDI 215
Query: 213 FSLLDQISFDKEYIRIIYAST 233
L+D++ ++E ++I+ +T
Sbjct: 216 RGLIDKV-IEEENVKIMPEAT 235
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 104/151 (68%), Gaps = 9/151 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP++++D+ QE +V+ L + ++T + PH+LF GPPG GKTT ALA+A +LF
Sbjct: 12 EKPWVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-EHWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRC 198
T+DAQ ALRRTME +S RF CNY S+
Sbjct: 123 TQDAQQALRRTMEMFSTNVRFILSCNYSSKI 153
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 18/201 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ +G+ R G +K+IIL
Sbjct: 100 IYGSENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASASRTGIAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMF 212
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFR--FSPLKEQDI 215
Query: 213 FSLLDQISFDKEYIRIIYAST 233
L+D++ ++E ++II +T
Sbjct: 216 RVLVDKV-IEEETVKIIPEAT 235
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q+++V L ++ N PH+LF GPPGTGKTT+ALA+ + L+G E
Sbjct: 7 WAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYG-E 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA P+K ++LDEAD+MT D
Sbjct: 66 NYRQYFLELNASDERGIDVIRNKVKDFARTVTPQD--------VPFKTVLLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRF 158
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 109/162 (67%), Gaps = 16/162 (9%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT+ALA+ H L+G E
Sbjct: 6 WAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y LELNASD+ GINV+RTK+K FA V G+ P+K ++LDEAD+MT
Sbjct: 65 NYDQFFLELNASDENGINVIRTKVKDFARTVTPGN---------VPFKTVLLDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
DAQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 116 DAQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRF 157
>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 25/217 (11%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
+FG K GK + N P ++ED S PWVEKYRP + DV
Sbjct: 20 SFGGDQKKGKRSAANL----------PVEAED------------SLPWVEKYRPNSLDDV 57
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNASD
Sbjct: 58 EGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 117
Query: 124 DRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181
DRGI+VVR +IKTF++ S + G +K+IILDEAD+MT AQ ALRR ME
Sbjct: 118 DRGIDVVREQIKTFSSTKQIFASAPKTGDSSLATFKLIILDEADAMTATAQMALRRIMEK 177
Query: 182 YSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
Y+ TRF I NY + + AL S F F L DQ
Sbjct: 178 YTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKDQ 213
>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 398
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 118/192 (61%), Gaps = 17/192 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A Q++G
Sbjct: 44 PWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGV 103
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIIILDEA 164
+ + VLELNASDDRGI+VVR +IKTFA+ GQ G +K+IILDEA
Sbjct: 104 KNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQ--AGSNLGAFKLIILDEA 161
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFS--------LL 216
D+MT AQ ALRR ME Y+ TRF I NY + T AL S F F L+
Sbjct: 162 DAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLT-PALLSRCTRFRFSPLKEQDIRVLV 220
Query: 217 DQISFDKEYIRI 228
DQ+ +KE +RI
Sbjct: 221 DQV-IEKEQVRI 231
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 110/171 (64%), Gaps = 10/171 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GKTT ALA+A +LF
Sbjct: 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
T+DAQ ALRRTME +S RF CNY S+ + S F F L D+
Sbjct: 123 TQDAQQALRRTMEMFSSNVRFILSCNYSSKI-IEPIQSRCAIFRFRPLRDE 172
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 104/169 (61%), Gaps = 9/169 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 14 PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 74 N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ ALRRTME YS TRF CN S+ + S F L DQ
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACNTSSK-IIEPIQSRCAIVRFSRLTDQ 173
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 104/151 (68%), Gaps = 9/151 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ QE +++ L + ++T + PH+LF GPPGTGKTT+ALA+A +LF
Sbjct: 12 EKPWVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRC 198
T+DAQ ALRRTME +S RF NY SR
Sbjct: 123 TQDAQQALRRTMEMFSNNVRFILSANYSSRI 153
>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874706|gb|EIT83551.1| replication factor C, subunit RFC5 [Aspergillus oryzae 3.042]
Length = 398
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 119/194 (61%), Gaps = 12/194 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + ++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 QDNLPWVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + + VLELNASDDRGI+VVR +IKTFA+ ++ GG YK+IIL
Sbjct: 100 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIIL 159
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ--- 218
DEAD+MT AQ ALRR ME Y+ TRF I NY + + AL S F F L +Q
Sbjct: 160 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKEQDIR 218
Query: 219 ----ISFDKEYIRI 228
+ +KE ++I
Sbjct: 219 SLVDLVIEKEEVKI 232
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 119/172 (69%), Gaps = 11/172 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 25 PWVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIFGP 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +++ VLELNASDDRGI VVR +IK FA+ +V S +GG +K+I+LDEAD+MT
Sbjct: 85 Q-FRNSVLELNASDDRGIEVVREQIKGFASTKSVFSS--KGG-----FKLIVLDEADAMT 136
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQI 219
+ AQ ALRR +E Y+K RF ICNY+++ A+ S F F L LDQ+
Sbjct: 137 QAAQGALRRVIEQYTKNVRFCIICNYVNK-IIPAIQSRCTRFRFNPLQLDQV 187
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 101/149 (67%), Gaps = 9/149 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GP 109
WVEKYRPK + DV Q++++R L +E + PH+LF GP GTGKTTTALA+A+ L+
Sbjct: 6 WVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSE 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL + LELNASD+RGI+ +RTKIK FA A + P+KII LDEAD++T
Sbjct: 66 ELVAANYLELNASDERGIDTIRTKIKDFAKTA--------PFGEVPFKIIHLDEADNLTA 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME YS TRF F CNY S+
Sbjct: 118 DAQQALRRIMEMYSATTRFIFACNYSSKI 146
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 102/150 (68%), Gaps = 12/150 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E++ + ++ PH+LFYGPPGTGKT+T LA+A QL+ P
Sbjct: 11 PWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR I FA+ SG +K++ILDEAD+M
Sbjct: 71 KEFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSG----------FKLVILDEADAM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRR +E +++ TRF FICNY+S+
Sbjct: 121 TNDAQNALRRVIEKFTENTRFCFICNYLSK 150
>gi|448123321|ref|XP_004204663.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|448125599|ref|XP_004205221.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358249854|emb|CCE72920.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358350202|emb|CCE73481.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
Length = 327
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ EE V L N PHM+ G PG GKTT+ +A++L GP
Sbjct: 12 PWVEKYRPKKLDDIVGNEETVERLKLIALDGNMPHMILSGLPGIGKTTSIHCLAYELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY +ELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYHQATMELNASDDRGIDVVRNKIKQFA-------QTKIQLPAGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSK 152
>gi|440638884|gb|ELR08803.1| replication factor C subunit 3/5 [Geomyces destructans 20631-21]
Length = 393
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 108/165 (65%), Gaps = 11/165 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP ++DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 43 EDTLPWVEKYRPDTLEDVSGHQDIIATINRFVETNRLPHLLLYGPPGTGKTSTVLALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + G YK+IILD
Sbjct: 103 IYGVKNMRQMVLELNASDDRGIDVVREQIKTFASTRQIFSSAPSEASGKSMATYKLIILD 162
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
EAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 163 EADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 207
>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
Length = 390
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 108/166 (65%), Gaps = 13/166 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ ++G G R G +K+IIL
Sbjct: 99 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLG-GASRSGNGMAGFKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCT 203
>gi|390346342|ref|XP_795505.3| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 259
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 102/150 (68%), Gaps = 12/150 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E++ + ++ PH+LFYGPPGTGKT+T LA+A QL+ P
Sbjct: 11 PWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR I FA+ SG +K++ILDEAD+M
Sbjct: 71 KEFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSG----------FKLVILDEADAM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRR +E +++ TRF FICNY+S+
Sbjct: 121 TNDAQNALRRVIEKFTENTRFCFICNYLSK 150
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 106/158 (67%), Gaps = 13/158 (8%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + PWVEKYRP + DV +++++ + + PH+LFYGPPGTGKT+T LA+
Sbjct: 23 PASKEHLPWVEKYRPSTLDDVVSHQDIIQTIQKFISANQLPHLLFYGPPGTGKTSTILAV 82
Query: 103 AHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKII 159
A QLF P +K+ +LELNASDDRGI+VVR +IK FA+ + SG +K+I
Sbjct: 83 ARQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFASARMVFSSG----------FKLI 132
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEAD MT+ AQ+ALRR +E Y+K RF ICNY++R
Sbjct: 133 ILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNYVNR 170
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 107/168 (63%), Gaps = 9/168 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI+VVRTKIK FA A G +KII LDEAD++T D
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMGG--------AEFKIIFLDEADALTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ+ALRRTME +S RF CNY SR + S F F L D+
Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRI-IEPIQSRCAVFRFRRLSDE 169
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 110/194 (56%), Gaps = 10/194 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P L PWVEKYRP+++KD+ EE V L + N PHM+ G PG GKTT+ +
Sbjct: 5 PQLTLQLPWVEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCL 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILD
Sbjct: 65 AHELLGKS-YSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPPGKHKIIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFD 222
EADSMT AQ ALRRTME YS TRF F CN S L S + L D+
Sbjct: 117 EADSMTAGAQQALRRTMELYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYSKLSDEQVL- 174
Query: 223 KEYIRIIYASTLKF 236
K + II A + F
Sbjct: 175 KRLMEIIKAENVSF 188
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 101/150 (67%), Gaps = 8/150 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
QPW+EK+RP+ ++D+ EE ++ + ET N PH+L GPPGTGKTT+ L +AH +
Sbjct: 2 DQPWIEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAML 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + YK+ V+ELNASDDRGI+VVR KIK FA Q + P +K+++LDEADSM
Sbjct: 62 G-DAYKTAVIELNASDDRGIDVVREKIKLFA-------QSKVSLPEGSHKLVLLDEADSM 113
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T AQ ALRR ME YS TRF +CN S+
Sbjct: 114 TPAAQQALRRIMELYSSTTRFALVCNISSK 143
>gi|294461102|gb|ADE76118.1| unknown [Picea sitchensis]
Length = 205
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 30 PEKSEDEVKRKM-APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
P + ++ K K+ + V+Q + PWVEKYRP+ + DVA ++++ + PH+L Y
Sbjct: 14 PSQKSNKGKGKIGSDVIQKTGPWVEKYRPQSLADVAAHKDIIETIDRLTSENKLPHLLLY 73
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148
GPPGTGKT+T LA+A +L+G + Y++ +LELNASDDRGI VVR +I+ FA+ S +
Sbjct: 74 GPPGTGKTSTVLAVARKLYGSQ-YQNMILELNASDDRGIEVVRHQIQDFASTQSFSFGAK 132
Query: 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
K+++LDEAD+MT+DAQ +LRR ME Y+K TRF ICNY+++
Sbjct: 133 SS-----VKLVLLDEADAMTKDAQFSLRRVMEKYTKSTRFVLICNYVNKI 177
>gi|154341867|ref|XP_001566885.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064210|emb|CAM40408.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 296
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/121 (64%), Positives = 92/121 (76%), Gaps = 6/121 (4%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PH LF+GPPGTGKTT+ LA+AH+LFGP+ +SRV ELNASDDRGINVVR K+K FA AV
Sbjct: 2 PHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAV 61
Query: 143 GSG-----QRRGG-YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
S Q G YP PP+K+IILDEAD++ DAQ ALRR ME +S VTRF +CNY+S
Sbjct: 62 SSNGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVS 121
Query: 197 R 197
R
Sbjct: 122 R 122
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 9/151 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ QE +V+ L + +T + PH+LF GPPGTGKT+ ALA+A +LF
Sbjct: 15 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELF 74
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 75 G-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRC 198
T+DAQ ALRRTME +S RF CNY S+
Sbjct: 126 TQDAQQALRRTMEMFSNNVRFILSCNYSSKI 156
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 105/161 (65%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GP GTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + S P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPSN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRF 161
>gi|440801293|gb|ELR22313.1| Replication factor C protein [Acanthamoeba castellanii str. Neff]
Length = 296
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 85/100 (85%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+V DVAHQEEVVR L +L+T N PH+L YGPPGTGKT+TALAI H+L+GP
Sbjct: 17 PWVEKYRPKKVDDVAHQEEVVRALKKSLDTGNLPHLLLYGPPGTGKTSTALAIGHELYGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
EL+K+RV+ELNASD+RGINV+R+K+K+F+ VA + G
Sbjct: 77 ELFKTRVMELNASDERGINVIRSKVKSFSQVATAAASYNG 116
>gi|449672093|ref|XP_002154784.2| PREDICTED: replication factor C subunit 5-like [Hydra
magnipapillata]
Length = 186
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 105/161 (65%), Gaps = 16/161 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + D+ ++++ + + PH+LFYGPPGTGKT+T LA+A QL
Sbjct: 10 SNLPWVEKYRPACLDDLISHKDIIDTIQKFISEGKLPHLLFYGPPGTGKTSTILAVAKQL 69
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+ P+ + S VLELNASDDRGI +VR +I FA+ + +K++ILDEAD+
Sbjct: 70 YSPKEFHSMVLELNASDDRGIGIVREQILGFASTRTVFKSK--------FKLVILDEADA 121
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
MT DAQNALRR ME Y++ TRF ICNY+ SRCT
Sbjct: 122 MTNDAQNALRRIMEKYTENTRFCLICNYLTGIIPAIQSRCT 162
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 102/150 (68%), Gaps = 12/150 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E++++ + ++ PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 9 PWVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLYTP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
++S VLELNASDDRGINVVR ++ FA+ SG +K+IILDEAD+M
Sbjct: 69 AQFRSMVLELNASDDRGINVVRGQVLNFASTRTIFKSG----------FKLIILDEADAM 118
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRR +E ++ RF ICNY+S+
Sbjct: 119 TNDAQNALRRIIEKFTDNVRFCLICNYLSK 148
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 100/147 (68%), Gaps = 8/147 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMGG--------APFKIIFLDEADALTSD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S RF CNY S+
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSK 153
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLSDVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + + VLELNASDDRGI VVR IKTFA+ GS R G +K+IIL
Sbjct: 100 IYGHQNMRQMVLELNASDDRGIEVVREHIKTFASTKQIFTAGSSASRAGIAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
DEAD+MT AQ ALRR ME Y+ TRF I NY + + AL S F F L +Q
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLS-PALLSRCTRFRFSPLHEQ 213
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 109/162 (67%), Gaps = 17/162 (10%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP ++DV ++++ L + + PHMLFYGPPGTGKT+T LA A +
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP Y+++++ELNASDDRGI+ VR +IK FA+ R + +K+IILDEAD
Sbjct: 80 IYGPN-YRNQLMELNASDDRGIDAVREQIKNFAST-------RQIF-ASTFKMIILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+MT AQNALRR +E Y+K RF ICNYI SRCT
Sbjct: 131 AMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCT 172
>gi|154279302|ref|XP_001540464.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150412407|gb|EDN07794.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 231
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/113 (66%), Positives = 91/113 (80%), Gaps = 5/113 (4%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-- 140
PHMLFYGPPGTGKT+T LA+A L+GP+LY+SR+LELNASD+RGI++VR KIK FA +
Sbjct: 5 PHMLFYGPPGTGKTSTILALAKSLYGPQLYRSRILELNASDERGISIVREKIKDFARMQL 64
Query: 141 ---AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190
+ R YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF
Sbjct: 65 SHPPLSDSAYREKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCL 117
>gi|255070803|ref|XP_002507483.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
gi|226522758|gb|ACO68741.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
Length = 334
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 97/147 (65%), Gaps = 8/147 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PWVEKYRP ++ D+ ++ V LT T N P+++F GPPG GKTT+ L +AH L
Sbjct: 8 ASLPWVEKYRPTKIDDIVGNKDAVDRLTAIASTGNMPNLIFTGPPGIGKTTSVLCLAHTL 67
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
GP YK VLELNASDDRGI+ VR KIK FA Q++ P +KII+LDEADS
Sbjct: 68 LGPS-YKDAVLELNASDDRGIDAVRNKIKMFA-------QKKVTLPPGRHKIILLDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICN 193
MT AQ ALRRTME YS TRF CN
Sbjct: 120 MTSAAQQALRRTMELYSSTTRFALACN 146
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 98/148 (66%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 16 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 76 N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTS 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 128 GAQQALRRTMEIYSNSTRFALACNTSSK 155
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 111/193 (57%), Gaps = 10/193 (5%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+L PWVEKYRP+ + D+ EE + L + N PHM+ G PG GKTT+ L +A
Sbjct: 5 ILTLELPWVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLA 64
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
H+L G + Y VLELNASDDRGI VVR +IK FA Q++ P +KIIILDE
Sbjct: 65 HELLGDD-YSKAVLELNASDDRGIEVVRNQIKQFA-------QKKSLLPPGKHKIIILDE 116
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
ADSMT AQ ALRRTME YS TRF F CN S L S + L D+ K
Sbjct: 117 ADSMTAGAQQALRRTMELYSNSTRFAFACNQ-SNKIIEPLQSRCAILRYTKLSDEQVL-K 174
Query: 224 EYIRIIYASTLKF 236
++II A +K+
Sbjct: 175 RLLQIIKAEDVKY 187
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 107/153 (69%), Gaps = 12/153 (7%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP+++ D+ E+++ + ++ PH+LFYGPPGTGKT+T LA A Q+
Sbjct: 8 SNLPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTILACAQQI 67
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEA 164
+ P+ + S+VLELNASDDRGI +VR +I +FA+ +G +K+I+LDEA
Sbjct: 68 YSPKEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG----------FKLIVLDEA 117
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
D+MT DAQNALRR +E +++ RF ICNY+S+
Sbjct: 118 DAMTNDAQNALRRVIEKFTENARFCLICNYLSK 150
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 13 PWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLGA 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 73 N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPSGSHKIVILDEADSMTT 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 125 GAQQALRRTMEIYSNSTRFALACNISSK 152
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 98/148 (66%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++KD+ E V L E N P+++ GPPGTGKTT+ L +AH+L GP
Sbjct: 23 PWVEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTTSILCLAHELLGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 83 N-FREAVLELNASDDRGIDVVRNKIKMFA-------QQKVTLPLGRHKIVILDEADSMTS 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 135 GAQQALRRTMEIYSSTTRFALACNQSSK 162
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 98/146 (67%), Gaps = 9/146 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++ EE+ L ++ N PH+LFYGPPGTGKTTTAL +A +L+G E
Sbjct: 6 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGINV+R ++K FA A G P+K+++LDEAD+MT D
Sbjct: 65 RWRENTLELNASDERGINVIRERVKEFARTAPAGG--------APFKLVVLDEADNMTSD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYIS 196
AQ ALRR ME Y+ TRF + NY+S
Sbjct: 117 AQQALRRIMEMYAATTRFVLLANYVS 142
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 100/148 (67%), Gaps = 9/148 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC 198
AQ ALRR ME Y+ TRF I NY S+
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKI 151
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 101/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRI 144
>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 25/217 (11%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
+FG K GK + N P ++ED S PWVEKYRP + DV
Sbjct: 20 SFGGDQKKGKRSAANL----------PVEAED------------SLPWVEKYRPTSLDDV 57
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNASD
Sbjct: 58 EGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 117
Query: 124 DRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181
DRGI+VVR +IKTF++ + + G +K+IILDEAD+MT AQ ALRR ME
Sbjct: 118 DRGIDVVREQIKTFSSTKQIFSAAPKAGDSALATFKLIILDEADAMTATAQMALRRIMEK 177
Query: 182 YSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
Y+ TRF I NY + + AL S F F L DQ
Sbjct: 178 YTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKDQ 213
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 130/217 (59%), Gaps = 18/217 (8%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR A PV Q + PWVEKYRP + DV+ ++++ + +E P
Sbjct: 20 QFSSDNTGKKAKRTAADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILTTINKFVEANRLP 79
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---V 140
H+L YGPPGTGKT+T LA+A +++G + VLELNASDDRGI+VVR +IKTFA+ +
Sbjct: 80 HLLLYGPPGTGKTSTILALARRIYGTSNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 139
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY------ 194
+ G YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 140 FSMAPSASTGSSLASYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSP 199
Query: 195 --ISRCT-FSALFSFLLFFMFFSLLDQISFDKEYIRI 228
+SRCT F FS L SL+D + +KE ++I
Sbjct: 200 ALLSRCTRFR--FSPLKEQDIRSLVDHV-IEKEQVQI 233
>gi|440301872|gb|ELP94258.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 337
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 113/153 (73%), Gaps = 7/153 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRPK++ +V QEEV+++L ++L T+ P++LF+GPPG+GKTT+ LA++
Sbjct: 12 MSETNAWSEKYRPKKLDEVKGQEEVIKLLKSSL-TSGLPNLLFFGPPGSGKTTSILALSR 70
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+LFG +K RVLELNAS++RGI+++RT +K +A V + G P YK+IILDE+
Sbjct: 71 ELFG-NCFKDRVLELNASNERGIDMIRTTLKNYAMQDVS---HQDGIP--DYKLIILDES 124
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
D++T DAQ ALRR ME +++ TRF ICNYISR
Sbjct: 125 DALTPDAQTALRRMMEDFTRNTRFCLICNYISR 157
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 9/148 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVTAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC 198
AQ ALRR ME Y+ TRF I NY S+
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKI 151
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 98/148 (66%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 16 PWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 76 N-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTS 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 128 GAQQALRRTMEIYSNSTRFALACNTSSK 155
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 101/162 (62%), Gaps = 16/162 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP ++ D+ E++ + ++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 5 QIGLPWVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKE 64
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + K VLELNASD RGINVVR +I FA+ C +K+IILDE D
Sbjct: 65 LYGAKNLKKMVLELNASDARGINVVRNEILNFAS--------SRSLHCKGFKVIILDECD 116
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+MT DAQ ALRR ME ++K RF ICNY+ SRCT
Sbjct: 117 AMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCT 158
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 95/151 (62%), Gaps = 8/151 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P L PWVEKYRP+ +KD+ EE + L + N PHM+ G PG GKTT+ +
Sbjct: 4 PSLTLELPWVEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVHCL 63
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
AH+L G Y VLELNASDDRGI+V+R +IK FA Q++ P +KIIILD
Sbjct: 64 AHELLGSH-YSQAVLELNASDDRGIDVIRNQIKHFA-------QKKLNLPVGKHKIIILD 115
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICN 193
EADSMT AQ ALRRTME YS TRF F CN
Sbjct: 116 EADSMTAGAQQALRRTMELYSNTTRFAFACN 146
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 132/219 (60%), Gaps = 9/219 (4%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +SP+K + V P + PWVEKYRP+ + DVA ++V + PH
Sbjct: 14 TYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPH 73
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+L YGPPGTGKT+T LA+A +L+G + Y++ +LELNASDDRGI+VVR +I+ FA+ S
Sbjct: 74 LLLYGPPGTGKTSTILAVARKLYGSQ-YQNMILELNASDDRGIDVVRQQIQDFASTQSLS 132
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALF 204
+ K+++LDEAD+MT+DAQ ALRR +E Y+K TRF ICN++++ AL
Sbjct: 133 FGVKSS-----VKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKI-IPALQ 186
Query: 205 SFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLS 243
S F F+ LD + + +I A L +E GL+
Sbjct: 187 SRCTRFR-FAPLDAVHVTERLKHVIKAEGLD-VEDSGLA 223
>gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 386
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/193 (46%), Positives = 117/193 (60%), Gaps = 33/193 (17%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K ST + P ++ED S PWVEKYRP + DV+ ++++ + +++
Sbjct: 28 KRSTAANLPVEAED------------SLPWVEKYRPVSLDDVSGHQDILATINKFVDSNR 75
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV- 140
PH+L YGPPGTGKT+T LA+A +++G E + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 76 LPHLLLYGPPGTGKTSTILALARRIYGAENTRQMVLELNASDDRGIDVVREQIKTFASTR 135
Query: 141 ---AVGSGQRRGGYPCPP---YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194
A SG P P YK+I+LDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 136 QIFAASSG------PAPSLARYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANY 189
Query: 195 --------ISRCT 199
+SRCT
Sbjct: 190 AHKLSPALLSRCT 202
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 100/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G +
Sbjct: 8 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 67 AWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y+ TRF + NY+SR
Sbjct: 118 DAQQALRRIMEMYANTTRFILLANYVSRI 146
>gi|336258765|ref|XP_003344190.1| hypothetical protein SMAC_08123 [Sordaria macrospora k-hell]
gi|380095124|emb|CCC07626.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 389
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 14/166 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ +GS R G +K+IIL
Sbjct: 100 IYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSSASRSGLAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCT 203
>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
Length = 389
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 124/199 (62%), Gaps = 14/199 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ Q++++ + ++T PH+LFYGPPGTGKT+T LA+A Q
Sbjct: 40 EDSLPWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQ 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDE 163
++G + VLELNASDDRGI+VVR +IKTFA+ G +K+IILDE
Sbjct: 100 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDE 159
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMFFS 214
AD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 160 ADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFR--FSPLKEKDIRV 217
Query: 215 LLDQISFDKEYIRIIYAST 233
L+D++ D+E ++I+ +T
Sbjct: 218 LVDKV-IDEENVKILPDAT 235
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 102/157 (64%), Gaps = 9/157 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ D+ E++ + ++ PH+L YGPPGTGKT+T LAIA +LFG
Sbjct: 14 WIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKLFGNR 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L ++ VLELNASDDRGI+V+R +IK FA+ P K+IILDEAD MT+D
Sbjct: 74 LTQN-VLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIKLIILDEADQMTKD 132
Query: 171 AQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ ALRRT+E YSK RF ICNY+ SRCT
Sbjct: 133 AQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCT 169
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 99/150 (66%), Gaps = 8/150 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L
Sbjct: 15 NNPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 74
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GP YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSM
Sbjct: 75 GPN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T AQ ALRRT+E YS TRF CN S+
Sbjct: 127 TSGAQQALRRTIEIYSNSTRFALACNTSSK 156
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 105/161 (65%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + ++ QEE + L ++ N PHMLF GPPGTGKTT ALA AH L+G
Sbjct: 12 WAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGKN 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ VLELNASD+RGI+V+R KIK FA +V G P+K+IILDE+D++T D
Sbjct: 72 -YQQFVLELNASDERGIDVIRGKIKEFARTSVVGG--------VPFKLIILDESDNLTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRR ME ++ +RF I NY S+ + +ALF F
Sbjct: 123 AQQALRRMMENFTLTSRFILIANYPSKIIEPIQSRTALFRF 163
>gi|336467972|gb|EGO56135.1| hypothetical protein NEUTE1DRAFT_130196 [Neurospora tetrasperma
FGSC 2508]
gi|350289788|gb|EGZ71013.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 389
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 124/199 (62%), Gaps = 14/199 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ Q++++ + ++T PH+LFYGPPGTGKT+T LA+A Q
Sbjct: 40 EDSLPWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQ 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDE 163
++G + VLELNASDDRGI+VVR +IKTFA+ G +K+IILDE
Sbjct: 100 IYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDE 159
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMFFS 214
AD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 160 ADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFR--FSPLKEKDIRV 217
Query: 215 LLDQISFDKEYIRIIYAST 233
L+D++ D+E ++I+ +T
Sbjct: 218 LVDKV-IDEENVKILPDAT 235
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 110/183 (60%), Gaps = 11/183 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIARQVYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+ + S F F L
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPL 171
Query: 216 LDQ 218
D+
Sbjct: 172 SDE 174
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 118/190 (62%), Gaps = 17/190 (8%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR +A PV + + PWVEKYRP + DV+ ++++ + +E P
Sbjct: 21 QFSSDNTAGKQKRIVADLPVEAEDNLPWVEKYRPNTLDDVSGHKDILATINRFIEQNKLP 80
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA----- 138
H+L YGPPGTGKT+T LA+A Q++GP+ + VLELNASDDRGI+VVR +IKTFA
Sbjct: 81 HLLLYGPPGTGKTSTILALARQIYGPKNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 140
Query: 139 -AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--- 194
+ + G + +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 141 FSASTQQGPSGAKFGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHK 200
Query: 195 -----ISRCT 199
+SRCT
Sbjct: 201 LSPALLSRCT 210
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 101/162 (62%), Gaps = 16/162 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP ++ D+ E++ + +E PH+LFYGPPGTGKT+T LA+A +
Sbjct: 5 QIGLPWVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKE 64
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + K VLELNASD RGI+VVR +I FA+ C +K+IILDE D
Sbjct: 65 LYGAKNLKKMVLELNASDARGIDVVRNEILNFAS--------SRSLHCKGFKVIILDECD 116
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+MT DAQ ALRR ME ++K RF ICNY+ SRCT
Sbjct: 117 AMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCT 158
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 117/192 (60%), Gaps = 19/192 (9%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGYPCPPYKIIILDE 163
+ + VLELNASDDRGI+VVR +IKTFA + A SG G +K+IILDE
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGA-----FKLIILDE 160
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ----- 218
AD+MT AQ ALRR ME Y+ TRF I NY + + AL S F F L +Q
Sbjct: 161 ADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKEQDIRKL 219
Query: 219 --ISFDKEYIRI 228
DKE ++I
Sbjct: 220 VDTVIDKEQVQI 231
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 116/174 (66%), Gaps = 15/174 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG- 108
PWVEKYRP++++D+ Q+++V +TN +++ N PH+L YGPPGTGKT+T +A A +++G
Sbjct: 18 PWVEKYRPQRLEDLVSQDDIVSSITNLIDSENLPHLLLYGPPGTGKTSTIVAAAKRMYGS 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADS 166
Y S LELNASD RGI+VVR +IK FA G+ Q +G K+IILDEAD+
Sbjct: 78 SSAYSSMTLELNASDARGIDVVRNEIKEFA----GTKQLFNKG------IKLIILDEADA 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQI 219
MT DAQ ALRR +E Y+K RF +CNY+S+ AL S F F L DQI
Sbjct: 128 MTSDAQFALRRIIEKYTKNARFCLVCNYVSK-IIPALQSRCTRFRFAPLSRDQI 180
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 114/178 (64%), Gaps = 10/178 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E+++ ++ L PH+LFYGPPGTGKT+T LA A +L+
Sbjct: 9 PWVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYST 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI VVR +I +FA+ + +K+IILDEAD+MT+
Sbjct: 69 TQFNSMVLELNASDDRGIGVVRNQILSFASTRTIFNK--------GFKLIILDEADAMTK 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQISFDKEYI 226
DAQNALRR ME + + TRF ICNY+++ A+ S F F L D+IS EYI
Sbjct: 121 DAQNALRRVMEKFMENTRFCLICNYLTKI-IPAIQSRCTRFRFGPLTTDKISSRLEYI 177
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRI 144
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 13/152 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + + +E++ + ++ PH+LFYGPPGTGKT+T A A QL+G
Sbjct: 11 PWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTIKACAKQLYG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ YKS VLELNASDDRGI VVR +IKTFA+ +G +K+IILDEAD+M
Sbjct: 70 KAYKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAG----------FKLIILDEADAM 119
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T DAQ ALRR +E Y+K TRF ICNY+S+ +
Sbjct: 120 TNDAQAALRRVIEKYTKHTRFCLICNYVSKIS 151
>gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 329
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 107/147 (72%), Gaps = 7/147 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L++ P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLDSG-LPNLLFFGPPGSGKTTSILAVAHELFQG- 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V G P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDV---THYDGIP--DYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR ME ++K TRF ICNYISR
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISR 146
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 100/148 (67%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ E+++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 9 PWVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYEP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I FA+ ++ +K+IILDEAD+MT
Sbjct: 69 KEFSSMVLELNASDDRGIGIVRGEILNFASTRTIFNKK--------FKLIILDEADAMTH 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E Y+ RF ICNY+S+
Sbjct: 121 DAQNALRRVIEKYADNARFCIICNYLSK 148
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ ++ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 13 PWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 73 N-SKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGQHKIVILDEADSMTS 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 125 GAQQALRRTMEIYSNSTRFALACNTSSK 152
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSK 142
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 105/150 (70%), Gaps = 12/150 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ E+++ + ++ PH+LFYGPPGTGKT+T LA A Q++ P
Sbjct: 9 PWVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILACAQQIYSP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S+VLELNASDDRGI +VR +I +FA+ +G +K+I+LDEAD+M
Sbjct: 69 KEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG----------FKLIVLDEADAM 118
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRR +E +++ RF ICNY+S+
Sbjct: 119 TNDAQNALRRVIEKFTENARFCLICNYLSK 148
>gi|406605842|emb|CCH42728.1| Replication factor C subunit 4 [Wickerhamomyces ciferrii]
Length = 324
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 112/194 (57%), Gaps = 17/194 (8%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L+ PWVEKYRP +++DV EE + L + N PH++ G PG GKTT+
Sbjct: 1 MSNALKLELPWVEKYRPSKLEDVTGNEETISRLKLISQDGNMPHLIISGLPGIGKTTSIH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G + Y + VLELNASDDRGI+VVR KIK FA Q++ P +KIII
Sbjct: 61 CLAHELLG-DAYSNAVLELNASDDRGIDVVRNKIKQFA-------QKKVSLPQGRHKIII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCTFSALFSFLLFFMF 212
LDEADSMT AQ ALRRTME YS TRF F CN SRC +
Sbjct: 113 LDEADSMTPGAQQALRRTMEIYSNTTRFAFACNVSNKIIEPLQSRCAILRYTKLSDEEVL 172
Query: 213 FSLLDQISFDK-EY 225
LLD I F+K EY
Sbjct: 173 KRLLDIIKFEKVEY 186
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 105/155 (67%), Gaps = 12/155 (7%)
Query: 47 SSQP---WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
S QP W EKYRP+ + +V +Q+EVV L +E N PH+LF GPPGTGKTT A +A
Sbjct: 9 SEQPLLLWAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLA 68
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
H L+G Y+ +LELNASD+RGI+V+R+K+K FA V +G+ P+KII+LDE
Sbjct: 69 HDLYGDN-YRQYMLELNASDERGIDVIRSKVKEFARTRV-AGE-------VPFKIILLDE 119
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
AD+MT DAQ ALRR ME Y+ TRF I NY S+
Sbjct: 120 ADNMTADAQQALRRLMELYTATTRFILIANYPSKI 154
>gi|358056280|dbj|GAA97763.1| hypothetical protein E5Q_04442 [Mixia osmundae IAM 14324]
Length = 382
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 94/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L NCPH++ G PG GKTT+ LA+AH L G
Sbjct: 62 PWVEKYRPAVLDDIVGNEETIERLKVIARDGNCPHIIISGQPGIGKTTSILALAHALLG- 120
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IKTFA Q++ P +KIIILDEADSMT
Sbjct: 121 KAYKEGVLELNASDERGIDVVRNRIKTFA-------QKKVTLPAGRHKIIILDEADSMTP 173
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 174 GAQQALRRTMEIYSNTTRFALACN 197
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSK 142
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 109/171 (63%), Gaps = 14/171 (8%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS PWVEKYRP ++ D+ + +V + +E PH+LFYGPPGTGKT+ +AIA ++
Sbjct: 30 SSWPWVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKI 89
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEA 164
+G + S VLELNASDDRGI+VVR +IK FA SG K+IILDEA
Sbjct: 90 YGKH-FSSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGA----------KLIILDEA 138
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
DSMT DAQ +LRR +E Y+K TRF ICNY+S+ AL S + F F L
Sbjct: 139 DSMTNDAQFSLRRVIEKYTKHTRFCLICNYVSK-IIPALQSRCMRFRFAPL 188
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 104/161 (64%), Gaps = 13/161 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V EE++ +++ N PH+LFYGPPGTGKTTT A AH L+G
Sbjct: 19 PWVEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAHYLYGK 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADS 166
E ++ VLE+NASDDRGI+VVR +I+ FA +V S + +K++ILDEAD
Sbjct: 79 ERIRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSS--FKLVILDEADQ 136
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
M+ DAQ ALRR +E Y++ RF +CN+I SRCT
Sbjct: 137 MSSDAQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCT 177
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 12/194 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PWVEKYRPK + ++ E ++R + ++ PH+L YGPPGTGKT+T LA A +
Sbjct: 9 RANLPWVEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPPGTGKTSTILACARK 68
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+ P + S VLELNASDDRGI +VR +I +FA+ G +K+IILDEAD
Sbjct: 69 LYTPTQFNSMVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-LDQISFDKE 224
+MT DAQNALRR +E Y+ RF ICNY+S+ AL S F F L +QI
Sbjct: 121 AMTIDAQNALRRIIEKYTDNVRFCIICNYLSK-IIPALQSRCTRFRFLPLAAEQIIPRLN 179
Query: 225 YIRIIYASTLKFLE 238
Y +I A LK E
Sbjct: 180 Y--VIEAENLKVTE 191
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSK 142
>gi|344231186|gb|EGV63068.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 325
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N PHM+ G PG GKTT+ +A +L GP
Sbjct: 12 PWVEKYRPHKLDNIVGNEETVERLKLIANDGNMPHMIISGLPGIGKTTSIHCLALELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELYKS LELNASDDRGI+VVR +IK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYKSATLELNASDDRGIDVVRNRIKQFA-------QTKIQLPPGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSK 152
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 121/195 (62%), Gaps = 15/195 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 QDNLPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + G +K+IILD
Sbjct: 102 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILD 161
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMFF 213
EAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 162 EADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFR--FSPLKEQDIR 219
Query: 214 SLLDQISFDKEYIRI 228
L+DQ+ +KE +RI
Sbjct: 220 VLIDQV-IEKEDVRI 233
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRI 144
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 101/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ + PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRI 144
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 100/147 (68%), Gaps = 8/147 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA Q+E + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIGG--------APFKIIFLDEADALTAD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S RF CNY S+
Sbjct: 127 AQSALRRTMERFSSNCRFILSCNYSSK 153
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 106/158 (67%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++++ E++V +L + + PH+LFYGPPGTGKT+T LA A +L+G
Sbjct: 64 PWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYGA 123
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +K VLELNASDDRGI+VVR +IK FA G +R K++ILDEAD+MT
Sbjct: 124 D-FKMMVLELNASDDRGIDVVRGQIKEFA------GTKR--LFSSGVKLVILDEADAMTN 174
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
DAQ ALRR +E Y+K TRF ICNY+ SRCT
Sbjct: 175 DAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCT 212
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 110/170 (64%), Gaps = 2/170 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ + VLELNASDDRGI+VVR +IKTFA+ + S G +K+IILDEAD+MT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ ALRR ME Y+ TRF I NY + + AL S F F L +Q
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKEQ 214
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 100/147 (68%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NYIS
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYIS 142
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 120/196 (61%), Gaps = 11/196 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ PWVEKYRP + DV +++ + ++ PH+LFYGPPGTGKT+T LA+
Sbjct: 31 PLDDEMLPWVEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAV 90
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++GPE Y+ ++LELNASDDRGI+VVR +IK FA RG +K+IILD
Sbjct: 91 ARRIYGPE-YRKQILELNASDDRGIDVVREQIKQFAETRTLFA--RG------FKLIILD 141
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFD 222
EAD MT+ AQ ALRR +E Y+K RF ICNY+++ A+ S F FS L + +
Sbjct: 142 EADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIA-PAIQSRCTRFR-FSPLPIVEVE 199
Query: 223 KEYIRIIYASTLKFLE 238
K +I A +K E
Sbjct: 200 KRIGTVIEAEHVKLTE 215
>gi|453083984|gb|EMF12029.1| replication factor C subunit 3 [Mycosphaerella populorum SO2202]
Length = 399
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 6/177 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 44 EDTLPWVEKYRPNALADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARR 103
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGS--GQRRGGYPCPPYKIII 160
++G + + VLELNASDDRGI+VVR +IKTF++ + GS RR YK+II
Sbjct: 104 IYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKTRRDDSSIAHYKLII 163
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLD 217
LDEAD+MT AQ ALRR ME Y+ TRF I NY + + AL S F F L D
Sbjct: 164 LDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKD 219
>gi|407043555|gb|EKE42013.1| replication factor C subunit 4, putative [Entamoeba nuttalli P19]
Length = 329
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 106/147 (72%), Gaps = 7/147 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L + P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQG- 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V G P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDV---THYDGIP--DYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR ME ++K TRF ICNYISR
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISR 146
>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus Af293]
gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus A1163]
Length = 396
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 121/195 (62%), Gaps = 14/195 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 QDNLPWVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ ++ + G +K+IIL
Sbjct: 102 IYGSNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIIL 161
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCTFSALFSFLLFFMFF 213
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT FS L
Sbjct: 162 DEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCT-RFRFSPLKEQDIR 220
Query: 214 SLLDQISFDKEYIRI 228
SL+DQ+ +KE IRI
Sbjct: 221 SLVDQV-IEKEQIRI 234
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 113/181 (62%), Gaps = 23/181 (12%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
+ PV+ PW+EKYRP+ + DV ++++ L LE PH+L YGPPGTGKT+T L
Sbjct: 14 IDPVVALECPWIEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVL 73
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-----RRGGYPCPP 155
A+A ++FGP+ YKS LELNASDDRGI+VV+ +IK FA G R G
Sbjct: 74 ALAKKVFGPK-YKSMTLELNASDDRGIDVVKKEIKDFAGTRTIFGLIVLLCRTG------ 126
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT---FSALF 204
+K+IILDEAD+MT+ AQ ALRR +E Y+ RF ICNY+ SRCT FS L
Sbjct: 127 FKMIILDEADNMTQTAQFALRRIIENYTANARFCLICNYVNKIIPALQSRCTRFRFSPLT 186
Query: 205 S 205
S
Sbjct: 187 S 187
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 107/170 (62%), Gaps = 9/170 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK + ++ E +++ + ++ PH+L YGPPGTGKT+T LA A +
Sbjct: 7 QVNLPWVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTILACARK 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+ P + S VLELNASDDRGI +VR +I +FA+ G +K+IILDEAD
Sbjct: 67 LYTPAQFNSMVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
+MT DAQNALRR +E Y+ RF ICNY+S+ AL S F F L
Sbjct: 119 AMTIDAQNALRRIIEKYTDNVRFCIICNYLSK-IIPALQSRCTRFRFLPL 167
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 99/149 (66%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRI 144
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 119/191 (62%), Gaps = 29/191 (15%)
Query: 12 GKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVR 71
GK+K+ N + QS EKS+ + + PWVEKYRP +++V ++++
Sbjct: 4 GKSKATN-----ESIQSETEKSQ-----------KDNLPWVEKYRPSTLEEVVSHKDIIY 47
Query: 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVV 130
+ + + PH+LFYGPPGTGKT+T LAIA QL+ P +K+ VLELNASDDRGI VV
Sbjct: 48 TIQKFITSNRLPHLLFYGPPGTGKTSTILAIARQLYQTPMSFKNNVLELNASDDRGIEVV 107
Query: 131 RTKIKTFAA--VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188
R +IK FA+ + SG +K+IILDEAD MT AQ+ALRR +E Y+K RF
Sbjct: 108 REQIKNFASARMVFSSG----------FKLIILDEADQMTTTAQSALRRVIEQYTKNVRF 157
Query: 189 FFICNYISRCT 199
ICNY++R +
Sbjct: 158 CIICNYVNRIS 168
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 108/163 (66%), Gaps = 21/163 (12%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S PWVEKYRP ++ ++ ++++ + ++ PHMLFYGPPGTGKT+T LA A +L
Sbjct: 34 DSLPWVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKL 93
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEA 164
+G + ++S +LELNASDDRGI+VVR +IK FA+ SG +K+IILDEA
Sbjct: 94 YGDK-FRSMILELNASDDRGIDVVREQIKNFASTRKLFSSG----------FKLIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
D+MT+ AQNALRR +E Y+K RF ICNY+ SRCT
Sbjct: 143 DAMTQAAQNALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCT 185
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH++ GP
Sbjct: 19 PWVEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 79 S-YREGVLELNASDDRGLDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTT 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 131 GAQQALRRTMEIYSNTTRFALACNTSSK 158
>gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS]
gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704169|gb|EMD44462.1| replication factor C subunit 4, putative [Entamoeba histolytica
KU27]
Length = 329
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 105/147 (71%), Gaps = 7/147 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L + P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELF-QG 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGT-----PDYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR ME ++K TRF ICNYISR
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISR 146
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 99/149 (66%), Gaps = 12/149 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A P P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTA----------PIKAPFKLVILDEADNMTS 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 115 DAQQALRRIMEIYAQNTRFILLANYVSRI 143
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH++ GP
Sbjct: 17 PWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 77 S-YREGVLELNASDDRGLDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTT 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 129 GAQQALRRTMEIYSNTTRFALACNTSSK 156
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 100/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRI 144
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 109/173 (63%), Gaps = 10/173 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +KD+ +Q+++ L ++ N PH+LF GPPGTGKTT A A+AH L+G E
Sbjct: 17 WTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYG-E 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+ +R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 76 SYQQFMLELNASDERGIDTIREKVKEFA--------RSKTPPEIPFKIVLLDEADNMTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
AQ ALRR ME YS TRF NY S+ + S FF F SL + D+
Sbjct: 128 AQQALRRLMELYSASTRFILAANYPSKI-IDPIQSRCAFFRFTSLKKEDVIDR 179
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ +KD+ EE+V L N PHM+ G PG GKTT+ IAH+L G
Sbjct: 10 PWVEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHCIAHELLGD 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 S-YSQAVLELNASDDRGIDVVRNQIKQFA-------QKKCTLPPGKHKIIILDEADSMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 122 GAQQALRRTMEIYSSSTRFAFACN 145
>gi|340518366|gb|EGR48607.1| replication factor C, subunit 3 [Trichoderma reesei QM6a]
Length = 391
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 13/166 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDTLPWVEKYRPVTLDDVSGHQDILATINKFVESNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ +G G +G +K+IIL
Sbjct: 100 IYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGGGAAKGNS-IAGFKLIIL 158
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 159 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCT 204
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 100/160 (62%), Gaps = 16/160 (10%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+++ D+ Q+ +V + + PH+LFYGPPGTGKTTT LA A L+
Sbjct: 12 NMPWVEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLLFYGPPGTGKTTTILACAKVLY 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
P + S VLELNASDDRGI VR I FA+ +GG K+IILDEAD+M
Sbjct: 72 TPAQFASMVLELNASDDRGIGTVRGAILDFASTKT---MFQGG-----VKLIILDEADAM 123
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
T DAQNALRR ME Y+ RF ICNY+ SRCT
Sbjct: 124 THDAQNALRRIMEKYTANVRFCIICNYLGKIIPAIQSRCT 163
>gi|66513962|ref|XP_623937.1| PREDICTED: replication factor C subunit 2 [Apis mellifera]
Length = 350
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 100/164 (60%), Gaps = 8/164 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S VK K PW+EKYRP+ D+ E+ V L+ + NCP+++ G
Sbjct: 17 PSTSGYNVKNKEKDKKLDHLPWIEKYRPQVFSDIVGNEDTVSRLSVFAQQGNCPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP ++K VLELNAS+DRGI+VVR KIK FA Q+R
Sbjct: 77 PPGVGKTTTILCLARILLGP-IFKEAVLELNASNDRGIDVVRNKIKMFA-------QKRV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
P +KIIILDEADSMT AQ ALRRTME YS TRF CN
Sbjct: 129 NLPKGKHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACN 172
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSK 142
>gi|451999620|gb|EMD92082.1| hypothetical protein COCHEDRAFT_1193657 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 25/217 (11%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
+FG K GK + N P ++ED + PWVEKYRP + DV
Sbjct: 19 SFGGDSKKGKRSAANL----------PVEAEDTL------------PWVEKYRPASLDDV 56
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNASD
Sbjct: 57 EGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 116
Query: 124 DRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181
DRGI VVR +IKTF++ + + G +K+I+LDEAD+MT AQ ALRR ME
Sbjct: 117 DRGIEVVREQIKTFSSTKQIFSAAPKAGDSSLATFKLIVLDEADAMTSTAQMALRRIMEK 176
Query: 182 YSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
Y+ TRF I NY + + AL S F F L DQ
Sbjct: 177 YTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKDQ 212
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 109/162 (67%), Gaps = 15/162 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 20 QDLLPWVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + +++ VLELNASD+RGI+VVR +IK+FA+ G + G +K+I+LDEAD
Sbjct: 80 IYGAQ-FRNSVLELNASDERGIDVVREQIKSFASTKSVFGAKAG------FKLIVLDEAD 132
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+MT+ AQ ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 133 AMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 174
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT + AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTASTAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSK 154
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 103/151 (68%), Gaps = 11/151 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ E++V + ++ + PHMLFYGPPGTGKT+ LA + ++FG
Sbjct: 16 PWVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFG- 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILDEADS 166
E S VLELNASDDRGI+V R +I FA+ +A+ +G +K+IILDEAD+
Sbjct: 75 ETSNSSVLELNASDDRGIDVARGRILNFASTKRIAIQAG-------TASFKLIILDEADA 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT DAQNALRR +E ++ RF ICNY+S+
Sbjct: 128 MTNDAQNALRRIIEKFTDNVRFCLICNYLSK 158
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 15/202 (7%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP + PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA
Sbjct: 32 APPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILA 91
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A +L+GP+ Y++ +LELNASDDRGI+VVR +I+ FA+ S + K+++L
Sbjct: 92 VARKLYGPK-YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS------VKLVLL 144
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISF 221
DEAD+MT+DAQ ALRR +E Y+K TRF I N++++ AL S F F+ LD +
Sbjct: 145 DEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKI-IPALQSRCTRFR-FAPLDPLHV 202
Query: 222 DKEYIRIIYASTLKFLEGFGLS 243
+ +I A EG G+S
Sbjct: 203 SQRLKHVIEA------EGLGVS 218
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 105/165 (63%), Gaps = 22/165 (13%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G +
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-D 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 AWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCTFSALFSF 206
DAQ ALRR ME Y+ TRF + NY+ SRC A+F F
Sbjct: 116 DAQQALRRIMEMYANTTRFILLANYVSGIIEPIQSRC---AIFRF 157
>gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
Length = 340
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + ++ E V L E N P+++ GPPGTGKTT+ L +AHQL GP
Sbjct: 24 PWLEKYRPQFINEIVGNTEAVARLQVIAEEGNMPNVILSGPPGTGKTTSILCLAHQLLGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 84 N-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTA 135
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 136 GAQQALRRTMEIYSGTTRFALACNMSSK 163
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + ++ E V L E N P+++ GPPGTGKTT+ L +AHQL GP
Sbjct: 20 PWLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 T-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTA 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 132 GAQQALRRTMEIYSNTTRFALACNQSSK 159
>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
subunit, putative [Candida dubliniensis CD36]
gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
Length = 339
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 107/162 (66%), Gaps = 9/162 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP +++V Q+E+V + +ET PH+LFYGPPGTGKT+T +A+A +
Sbjct: 6 KDNLPWVEKYRPDNLEEVKGQQEIVDTVRKFVETRKLPHLLFYGPPGTGKTSTIIALAKE 65
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G YK +LELNASDDRGI+VVR +IK FA+ + +K+IILDEAD
Sbjct: 66 IYGSINYKDMILELNASDDRGIDVVRNQIKNFASTR-QIFTKNNSINNDQFKLIILDEAD 124
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
+MT AQN+LRR +E ++K RF + NY ISRCT
Sbjct: 125 AMTNIAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCT 166
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 118/190 (62%), Gaps = 24/190 (12%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++S PWVEKYRP + +VA E V+ + +E PH+LF+GPPGTGKTTT +A+A Q
Sbjct: 14 ENSLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQ 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G Y++ +LELNASD+RGI+VVR +IKTFA+ SG +K++ILDE
Sbjct: 74 IYGKN-YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------FKLVILDE 122
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT---FSALFSFLLFFMF 212
AD+MT AQNALRR +E YS TRF + NY +SRCT FS L +
Sbjct: 123 ADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRL 182
Query: 213 FSLLDQISFD 222
+++Q S D
Sbjct: 183 AHVIEQESVD 192
>gi|380013855|ref|XP_003690961.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 2-like
[Apis florea]
Length = 351
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ D+ E+ V L+ + NCP+++ GPPG GKTTT L +A L GP
Sbjct: 38 PWIEKYRPQIFSDIVGNEDTVSRLSVFAQQGNCPNIIIAGPPGVGKTTTILCLARILLGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++K VLELNAS+DRGI+VVR KIK FA Q+R P +KIIILDEADSMT
Sbjct: 98 -IFKEAVLELNASNDRGIDVVRNKIKMFA-------QKRVNLPKGKHKIIILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 150 GAQQALRRTMEIYSNTTRFALACN 173
>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
Length = 396
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 130/220 (59%), Gaps = 17/220 (7%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
S Q S + + KR A PV Q + PWVEKYRP + DV+ ++++ + +E
Sbjct: 17 SAIQFSSDNASKRAKRPAADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILATINKFIEAN 76
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
PH+L YGPPGTGKT+T LA+A +++G + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 77 RLPHLLLYGPPGTGKTSTILALARRIYGSNNMRQMVLELNASDDRGIDVVREQIKTFAST 136
Query: 141 ----AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY-- 194
++ + G +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 137 KQIFSMAAPSASSGSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTH 196
Query: 195 ------ISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRI 228
+SRCT FS L SL+DQ+ +KE I I
Sbjct: 197 KLSPALLSRCT-RFRFSPLKEQDIRSLVDQV-IEKEQIHI 234
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KDV +E V L N PHM+ G PG GKTT+ +AH+L G
Sbjct: 11 PWVEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIHCLAHELLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 DAYSQAVLELNASDDRGIDVVRNQIKQFA-------QKKCTLPPGKHKIIILDEADSMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 123 GAQQALRRTMELYSNTTRFAFACN 146
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 99/147 (67%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NYIS
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYIS 142
>gi|413919223|gb|AFW59155.1| hypothetical protein ZEAMMB73_461194 [Zea mays]
Length = 188
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 102/169 (60%), Gaps = 9/169 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 14 PWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 74 S-YRDAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ ALRRTME YS TRF CN S+ + S F L DQ
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACNTSSK-IIEPIQSRCAIVRFSRLSDQ 173
>gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group]
gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group]
gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group]
Length = 335
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L + N P+++ GPPGTGKTT+ L++AH+L GP
Sbjct: 18 PWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKTTSILSLAHELLGP 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 78 S-YREAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 130 GAQQALRRTMEIYSNTTRFALACNTSSK 157
>gi|452840856|gb|EME42793.1| hypothetical protein DOTSEDRAFT_80413 [Dothistroma septosporum
NZE10]
Length = 401
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 122/197 (61%), Gaps = 9/197 (4%)
Query: 29 SPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
S ++ + KR A PV L+ + PWVEKYRP + DV+ +++ + ++T PH+
Sbjct: 25 SSNNTDSKGKRSAANLPVELEDNLPWVEKYRPNSLSDVSGHHDILATINKFVDTNRLPHL 84
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAV 142
L YGPPGTGKT+TALA+A +++G + + VLELNASDDRGI+VVR +IKTF++ +
Sbjct: 85 LLYGPPGTGKTSTALAMARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFA 144
Query: 143 GSGQRRGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTF 200
GS + +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY + +
Sbjct: 145 GSFDKSNNQNDTIAHFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLS- 203
Query: 201 SALFSFLLFFMFFSLLD 217
AL S F F L D
Sbjct: 204 PALLSRCTRFRFSPLKD 220
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 99/147 (67%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NY+S
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVS 142
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 119/189 (62%), Gaps = 11/189 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYGN 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ ++LELNASDDRGI+VVR +IK FA + R Y +K+I+LDEAD MT+
Sbjct: 100 E-YRKQILELNASDDRGIDVVREQIKNFAEM-------RTLY-SKGFKLIVLDEADMMTQ 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ+ALRR +E Y++ RF ICNY+++ A+ S F FS L Q +K +++
Sbjct: 151 AAQSALRRVIEQYTRNVRFCIICNYVNKI-IPAIQSRCTRFR-FSPLPQTEIEKRIKQVV 208
Query: 230 YASTLKFLE 238
A + E
Sbjct: 209 EAEHVNLTE 217
>gi|440797689|gb|ELR18770.1| DNA replication factor C complex subunit 2, putative [Acanthamoeba
castellanii str. Neff]
Length = 346
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 94/148 (63%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KD+ E V L N P+++ GPPGTGKTT+ L +AH L GP
Sbjct: 23 PWVEKYRPKDIKDIVGNVETVSRLQIIASEGNMPNLILAGPPGTGKTTSILCLAHALLGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRGI+VVR KIK FA Q++ K++ILDEADSMT
Sbjct: 83 N-YREGVLELNASDDRGIDVVRNKIKMFA-------QKKVNLAPGRQKVVILDEADSMTS 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 135 AAQQALRRTMEIYSNTTRFALACNVSSK 162
>gi|281204159|gb|EFA78355.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 319
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 96/148 (64%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++KD+ EE V L + N P+++ GPPGTGKTT+ L +A QL GP
Sbjct: 18 PWVEKYRPKEIKDIVGNEETVSRLESISMDGNLPNIIISGPPGTGKTTSILCLAQQLLGP 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK V ELNASDDR ++VVR KIKTFA Q + P +KIIILDEADSMT
Sbjct: 78 N-YKEAVYELNASDDRTLDVVRDKIKTFA-------QTKVTLPPGRHKIIILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR ME YS TRF CN S+
Sbjct: 130 GAQQALRRIMEIYSSTTRFALACNQSSK 157
>gi|310831184|ref|YP_003969827.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
gi|309386368|gb|ADO67228.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
Length = 314
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 101/157 (64%), Gaps = 15/157 (9%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ ++ HQ E + V+ N ++ N PH++FYGPPGTGKT+T LA+ +++F E
Sbjct: 7 WNEKYRPKKLNEIIHQNETILVIKNLIDNHNLPHLIFYGPPGTGKTSTILAVCNEIFPDE 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY-KIIILDEADSMTE 169
+ +R E NAS+DRGI +R KIK S Q+ YP P+ KIIILDE D++T
Sbjct: 67 IKYNRCFEFNASNDRGIKFIREKIKKI------SNQKIKNYPNTPHIKIIILDEVDTLTT 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRC 198
D+Q ALRR ME S TRF ICNY ISRC
Sbjct: 121 DSQYALRRIMENSSSNTRFCLICNYPNKLIEPIISRC 157
>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
Length = 338
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 106/158 (67%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV Q EV+ + LET PH+LFYGPPGTGKT++ +A+A +++G
Sbjct: 13 PWVEKYRPESLDDVYGQTEVITTIRKFLETGKLPHLLFYGPPGTGKTSSIIALAREIYGK 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 73 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIFS-KGFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 124 AAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCT 161
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 110/156 (70%), Gaps = 8/156 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP+ + PWVEKYRP+++ D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 7 APLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++IL
Sbjct: 67 CARQLYRDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVIL 118
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 119 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 154
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 102/160 (63%), Gaps = 9/160 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + +V EE++ +++ + PH LFYGPPGTGKTTT A AH LF
Sbjct: 37 SLPWVEKYRPSTLDEVVAHEEILSTTRRLIDSGSMPHFLFYGPPGTGKTTTVKACAHYLF 96
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ VLE+NASDDRGI+VVR +++ FA+ + P +K++ILDEAD M
Sbjct: 97 GKERVRANVLEMNASDDRGIDVVRQQVREFASTS-SIFCTNSSNPVSSFKLVILDEADQM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+ DAQ ALRR +E Y+K RF ICN I SRCT
Sbjct: 156 SGDAQAALRRIIEKYTKNVRFCIICNRINKIIPALQSRCT 195
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 16/161 (9%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
MT+DAQ ALRR +E Y++ TRF ICN++ SRCT
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCT 191
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 106/158 (67%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q E+V + ++ PH+LFYGPPGTGKT+T +A+A +++GP
Sbjct: 9 PWVEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYGP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK+ VLELNASDDRGI+VVR +IK FA+ +K+IILDEAD+MT
Sbjct: 69 K-YKNMVLELNASDDRGIDVVRNQIKDFASTM--------QIFSKGFKLIILDEADAMTS 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 120 VAQNALRRIIEKYTKNTRFCILANYSHKLNPALVSRCT 157
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSK 142
>gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
Length = 335
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 96/148 (64%), Gaps = 8/148 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+ PWVEKYRP ++ ++ + V L T N P+++F GPPG GKTT+ L +AH
Sbjct: 8 NSTLPWVEKYRPTKIDEIVGNADAVERLAAMAATGNVPNLIFSGPPGIGKTTSILCLAHT 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L GP YK VLELNASDDRGI+VVR KIK FA Q++ P +KI++LDEAD
Sbjct: 68 LLGPA-YKDAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVLLDEAD 119
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICN 193
SMT AQ A+RRTME YS TRF CN
Sbjct: 120 SMTSAAQQAMRRTMEIYSNTTRFALACN 147
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 103/160 (64%), Gaps = 17/160 (10%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++
Sbjct: 28 SLPWVEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY 87
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E Y+ ++LELNASDDRGI+VVR +IK FA + YK+IILDEAD M
Sbjct: 88 GSE-YRKQILELNASDDRGIDVVREQIKQFAETRTLFAK--------SYKLIILDEADMM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
T+ AQ ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 139 TQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCT 178
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 109/163 (66%), Gaps = 15/163 (9%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + PW+EKYRP+ + D+ Q+E++ + ++T PH+LFYGPPGTGKT+T +A+A
Sbjct: 1 MSDTLPWIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+++G YK+ VLELNASDDRGI+VVR +IK FA+ R+ +K+IILDEA
Sbjct: 61 EIYGKN-YKNMVLELNASDDRGIDVVRNQIKNFAST------RQIFNQGNSFKLIILDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
D+MT AQN+LRR +E ++K RF + NY ISRCT
Sbjct: 114 DAMTNAAQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCT 156
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 119/187 (63%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 29 PWVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGS 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK ++LELNASDDRGI+VVR ++K FA + R + YK+IILDEAD MT+
Sbjct: 89 D-YKKQILELNASDDRGIDVVREQVKQFA-------ETRTLF-SKGYKLIILDEADMMTQ 139
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRR +E Y+K RF ICNY+++ A+ S F FS L +K+ R++
Sbjct: 140 QAQAALRRVIEQYTKNVRFCIICNYVNKIA-PAIQSRCTRFR-FSPLPIAEVEKQVNRVV 197
Query: 230 YASTLKF 236
A ++
Sbjct: 198 EAENVQL 204
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 104/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV Q EVV + LE PH+LFYGPPGTGKT+T +A+A ++FG
Sbjct: 15 PWVEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIFGK 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 75 N-YSNMVLELNASDDRGIEVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 126 AAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCT 163
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 16/161 (9%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
MT+DAQ ALRR +E Y++ TRF ICN++ SRCT
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCT 191
>gi|353227396|emb|CCA77906.1| probable RFC4-DNA replication factor C, 37 kDa subunit
[Piriformospora indica DSM 11827]
Length = 334
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 96/144 (66%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV EE + L + NCPH++ G PG GKTT+ +AHQL GP
Sbjct: 15 PWVEKYRPQVLDDVVGNEETIDRLKVIAKEGNCPHIIISGLPGIGKTTSIHCLAHQLLGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR+KIK+FA Q++ P +KIIILDEADSMT
Sbjct: 75 A-YKEGVLELNASDERGIDVVRSKIKSFA-------QKKVTLPPGRHKIIILDEADSMTA 126
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME +S TRF CN
Sbjct: 127 GAQQALRRTMEIFSNTTRFALACN 150
>gi|302413517|ref|XP_003004591.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
gi|261357167|gb|EEY19595.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
Length = 391
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 118/196 (60%), Gaps = 16/196 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ +++ + ++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++GPE + VLELNASDDRGI+VVR +IKTFA+ YK+I+L
Sbjct: 99 IYGPENVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSARSGSGSSSGAAGYKLIVL 158
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMF 212
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 159 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFR--FSPLKEGDI 216
Query: 213 FSLLDQISFDKEYIRI 228
L+D++ D+E +RI
Sbjct: 217 RVLVDRV-VDEEGVRI 231
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 16/161 (9%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
MT+DAQ ALRR +E Y++ TRF ICN++ SRCT
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCT 191
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 111/157 (70%), Gaps = 13/157 (8%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP+ +K++ ++++ + ++ PH+LFYGPPGTGKT+T LA A ++
Sbjct: 37 STLPWVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGTGKTSTILACAKKI 96
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEA 164
+GP+ +++++LELNASD+RGI+VVR +IK FA+ SG +K++ILDEA
Sbjct: 97 YGPK-FRNQLLELNASDERGIDVVREQIKNFASTKQIFNSG----------FKLVILDEA 145
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201
D+MT AQNALRR +E Y+K RF ICNY+++ + +
Sbjct: 146 DAMTLAAQNALRRVIEKYTKNVRFCIICNYVNKISLA 182
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 104/160 (65%), Gaps = 20/160 (12%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ +++ + + PH+LFYGPPGTGKT+T LA+A QL+
Sbjct: 12 PWVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLYPD 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR I +FA+ SG +K++ILDEAD+M
Sbjct: 72 KQFGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSG----------FKLVILDEADAM 121
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
T+DAQNALRR ME +++ TRF ICNY+ SRCT
Sbjct: 122 TQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCT 161
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 109/155 (70%), Gaps = 8/155 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + + PWVEKYRP+++ D+ +++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 8 PLQKRNLPWVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGKTSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 ARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 154
>gi|358391339|gb|EHK40743.1| hypothetical protein TRIATDRAFT_127338 [Trichoderma atroviride IMI
206040]
Length = 391
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 13/166 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVTLEDVSGHQDILATINKFVEQNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ ++G G + +K+IIL
Sbjct: 100 IYGVSNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGGGASKSNS-IAGFKLIIL 158
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 159 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCT 204
>gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica]
gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 102/168 (60%), Gaps = 14/168 (8%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
+++ P K KRK P + PWVEKYRP + DV E V L + N P++
Sbjct: 2 SEAGPSK-----KRKGEPEFE--LPWVEKYRPMYLDDVVGHTETVERLKIMAKDGNIPNL 54
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
L G PG GKTT+ +A L GP+LYK VLELNASDDRGI VVR KIK FA
Sbjct: 55 LISGLPGIGKTTSVHCLARTLLGPQLYKDAVLELNASDDRGIEVVRGKIKNFA------- 107
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
Q++ P +KIIILDEADSMT AQNAL+RTME YS TRF F CN
Sbjct: 108 QKKVTMPPGKHKIIILDEADSMTAGAQNALKRTMELYSDTTRFAFACN 155
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 109/156 (69%), Gaps = 8/156 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 7 APLQTRNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++IL
Sbjct: 67 CARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVIL 118
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 119 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 154
>gi|440297885|gb|ELP90526.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 103/155 (66%), Gaps = 9/155 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ S PWVEKYRP + V E ++ L + PH+LFYGPPGTGKTTTALAI
Sbjct: 3 VEPSLPWVEKYRPTTISGVQGHEYILESLQQFISANQLPHLLFYGPPGTGKTTTALAIVK 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
Q+ GP+ Y + VLELNASD+RGINVVR +IK+FA+ R C K I+LDE+
Sbjct: 63 QICGPK-YTALVLELNASDERGINVVREQIKSFAST------RTLYTNC--TKFIVLDES 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
D +T+DAQNALRRT+E YS RF FICN ++ T
Sbjct: 114 DKLTKDAQNALRRTLEQYSGNCRFVFICNEVNLIT 148
>gi|15221697|ref|NP_176504.1| replication factor C 2 [Arabidopsis thaliana]
gi|12323266|gb|AAG51618.1|AC010795_22 replication factor, putative; 74998-73295 [Arabidopsis thaliana]
gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis thaliana]
gi|332195942|gb|AEE34063.1| replication factor C 2 [Arabidopsis thaliana]
Length = 333
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 97/146 (66%), Gaps = 8/146 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L
Sbjct: 14 NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSM
Sbjct: 74 GTN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICN 193
T AQ ALRRT+E YS TRF CN
Sbjct: 126 TSGAQQALRRTIEIYSNSTRFALACN 151
>gi|164659418|ref|XP_001730833.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
gi|159104731|gb|EDP43619.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
Length = 371
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 94/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ ++DV V L E NCPH+L G PG GKTT+ +AH L G
Sbjct: 16 PWVEKYRPRYLRDVVGNSATVERLRAIEEHGNCPHLLLSGLPGIGKTTSVHCLAHALLG- 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASDDRGI+VVR+KIK FA Q++ P +KII+LDEADSMT
Sbjct: 75 DAYKEAVLELNASDDRGIDVVRSKIKAFA-------QKKVSLPPGRHKIIVLDEADSMTP 127
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME Y+ TRF F CN
Sbjct: 128 GAQQALRRTMEIYAPTTRFCFACN 151
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 109/160 (68%), Gaps = 8/160 (5%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+ K PV + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+
Sbjct: 4 ENKGQPVQSRNLPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTS 63
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
T LA A QL+ + S VLELNASDDRGI++VR I +FA+ + ++G +K
Sbjct: 64 TILACAKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FK 115
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 116 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 155
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 135/225 (60%), Gaps = 12/225 (5%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T ++P S+ + A ++SS PWVEKYRP+ + DVA ++V + +
Sbjct: 7 TAPMDIDAAAPPHSKGKAPLSAAAAVRSS-PWVEKYRPQSLADVAAHRDIVDTIDRLTDE 65
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA- 138
PH+L YGPPGTGKT+T LA+A +++G + Y + +LELNASD+RGI VVR +I+ FA
Sbjct: 66 NRLPHLLLYGPPGTGKTSTILAVARKIYGSQ-YGNMILELNASDERGIGVVRQQIQDFAS 124
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
A ++ G + P K+++LDEAD+MT+DAQ ALRR +E Y++ TRF ICN++++
Sbjct: 125 AHSLSFGAK------PAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNK- 177
Query: 199 TFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLS 243
AL S F F+ LD + II + L EG GL+
Sbjct: 178 IIPALQSRCTRFR-FAPLDGSHVSERLQHIIKSEGLDVDEG-GLT 220
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 98/150 (65%), Gaps = 9/150 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + D+ +E++ L ++ PH+LFYGPPGTGKT+ +A A +L+
Sbjct: 27 SWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLY 86
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y S VLELNASDDRGI+VVR +IK FA Q K+IILDEADSM
Sbjct: 87 GKN-YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQ--------GVKLIILDEADSM 137
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQ +LRR +E Y+K RF ICNY+S+
Sbjct: 138 TNDAQFSLRRVIEKYTKNARFCLICNYVSK 167
>gi|310795633|gb|EFQ31094.1| replication factor C [Glomerella graminicola M1.001]
Length = 393
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 127/203 (62%), Gaps = 18/203 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPVSLADVSGHQDILVTINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA------VAVGSGQRRGGYPCPPYKII 159
++G E + VLELNASDDRGI+VVR +IKTFA+ + + GG YK+I
Sbjct: 99 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGGGMASYKLI 158
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFF 210
ILDEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 159 ILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFR--FSPLKER 216
Query: 211 MFFSLLDQISFDKEYIRIIYAST 233
L+D++ ++E+++I+ +T
Sbjct: 217 DIRVLVDKV-IEEEHVKIMPEAT 238
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 105/165 (63%), Gaps = 17/165 (10%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P S PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+
Sbjct: 20 PYDDDSLPWVEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGPPGTGKTSTILAV 79
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++GPE Y+ ++LELNASDDRGI+VVR +IK FA + +K++ILD
Sbjct: 80 ARRIYGPE-YRKQILELNASDDRGIDVVREQIKQFAETRTLFSK--------GFKLVILD 130
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
EAD MT+ AQ ALRR +E Y++ RF ICNY+ SRCT
Sbjct: 131 EADMMTQAAQAALRRVIEQYTRNVRFCIICNYVGKIAPAIQSRCT 175
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ E+ + L + + N PHM+ G PG GKTT+ +AH+L G
Sbjct: 11 PWVEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIHCLAHELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 71 S-YSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPTGKHKIIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACN 146
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 104/150 (69%), Gaps = 12/150 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +++++ +++ + ++ PH+LFYGPPGTGKT+T LA+A QL+ P
Sbjct: 11 PWVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQLYSP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR + +FA+ SG +KI+ILDEAD+M
Sbjct: 71 KEFNSMVLELNASDDRGIGIVRGPVLSFASTRTIFKSG----------FKIVILDEADAM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 121 TNDAQNALRRVIEKFTENTRFCLICNYLSK 150
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/190 (47%), Positives = 119/190 (62%), Gaps = 17/190 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV Q++VV+ + + PH+LFYGPPGTGKT+T +A+A +L+G
Sbjct: 7 PWVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYGK 66
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
Y++ VLELNASDDRGI+VVR +IK FA+ SG +K+IILDEAD+M
Sbjct: 67 N-YRNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSG----------FKLIILDEADAM 115
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK-EYI 226
+ AQNALRR +E Y+K TRF + NY + AL S F F L D D+ +Y
Sbjct: 116 SNAAQNALRRVIEKYTKNTRFCILANYSHKLN-PALLSRCTRFRFSPLADSALQDRVDY- 173
Query: 227 RIIYASTLKF 236
+I A LK
Sbjct: 174 -VIKAEGLKI 182
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 98/147 (66%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NYIS
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYIS 142
>gi|242010739|ref|XP_002426116.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510163|gb|EEB13378.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 338
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP KDV ++ +R L E N P++L GPPG GKTTT L +A L GP
Sbjct: 20 PWIEKYRPVTFKDVVGNDDAIRRLAAFAEVGNVPNILIAGPPGVGKTTTILCLARILLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+ VR KIK FA Q++ P +KII+LDEADSMT+
Sbjct: 80 S-FKEAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPKGKHKIIVLDEADSMTD 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS+ TRF F CN S+
Sbjct: 132 GAQQALRRTMEMYSQTTRFAFACNDSSK 159
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 124/197 (62%), Gaps = 11/197 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP+ + DVA ++V + + PH+L YGPPGTGKT+T LA+A +++
Sbjct: 35 SSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIY 94
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI VVR +I+ FA A ++ G + P K+++LDEAD+
Sbjct: 95 GSQ-YGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAK------PAVKLVLLDEADA 147
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYI 226
MT+DAQ ALRR +E Y++ TRF ICN++++ AL S F F+ LD +
Sbjct: 148 MTKDAQFALRRVIEKYTRSTRFALICNHVNKI-IPALQSRCTRFR-FAPLDGSHVSERLR 205
Query: 227 RIIYASTLKFLEGFGLS 243
II + L EG GLS
Sbjct: 206 HIIKSEGLDVDEG-GLS 221
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 107/187 (57%), Gaps = 10/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L N PHM+ G PG GKTT+ +AH++ G
Sbjct: 11 PWVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIHCLAHEMLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 ESYSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPPGKHKIIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D+ K + II
Sbjct: 123 GAQQALRRTMELYSNSTRFAFACNQ-SNKIIEPLQSRCAILRYSKLSDEQVL-KRLLEII 180
Query: 230 YASTLKF 236
A +++
Sbjct: 181 KAEDVQY 187
>gi|346973023|gb|EGY16475.1| replication factor C subunit 3 [Verticillium dahliae VdLs.17]
Length = 393
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 119/198 (60%), Gaps = 18/198 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ +++ + ++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV------AVGSGQRRGGYPCPPYKII 159
++GPE + VLELNASDDRGI+VVR +IKTFA+ A G YK+I
Sbjct: 99 IYGPENVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSARSGGGGGSSSGAAGYKLI 158
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFF 210
+LDEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L
Sbjct: 159 VLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFR--FSPLREA 216
Query: 211 MFFSLLDQISFDKEYIRI 228
L+D++ D E +RI
Sbjct: 217 DIRVLVDRV-VDDEGVRI 233
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 92/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ E+ V+ L N PHM+ G PG GKTT+ +AH+L G
Sbjct: 10 PWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHCLAHELLG- 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y VLELNASDDRGI VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 69 DAYSQAVLELNASDDRGIEVVRNQIKHFA-------QKKCTLPAGKHKIIILDEADSMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 122 GAQQALRRTMELYSNTTRFAFACN 145
>gi|401623752|gb|EJS41840.1| rfc4p [Saccharomyces arboricola H-6]
Length = 323
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ VL PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKVLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KIII
Sbjct: 61 CLAHELLGSS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPQGKHKIII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
LDEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACN 145
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 100/147 (68%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ + PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NYIS
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYIS 142
>gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88]
gi|350633381|gb|EHA21746.1| hypothetical protein ASPNIDRAFT_49138 [Aspergillus niger ATCC 1015]
Length = 396
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 126/220 (57%), Gaps = 16/220 (7%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
S Q S + + + KR A PV Q + PWVEKYRP ++DV+ ++++ + +E
Sbjct: 16 SAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEAN 75
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
PH+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 76 RLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFAST 135
Query: 141 -----AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195
S YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 136 KQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYT 195
Query: 196 SRCTFSALFSFLLFFMFFSL-------LDQISFDKEYIRI 228
+ + AL S F F L L I +KE + I
Sbjct: 196 HKLS-PALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNI 234
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 106/189 (56%), Gaps = 10/189 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + + L NCPH++ G PG GKTT+ L +AH L G
Sbjct: 22 PWVEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISGAPGIGKTTSILCLAHALLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA V P +KIIILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGIDVVRNKIKTFANTKV-------TLPAGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF CN S+ + S + L DQ K + I
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNNSSK-IIEPIQSRCAILRYGKLKDQEVL-KRLVEIA 191
Query: 230 YASTLKFLE 238
A +K+ E
Sbjct: 192 TAENVKYAE 200
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 104/150 (69%), Gaps = 9/150 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++GP
Sbjct: 30 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGP 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR ++K FA + R + +K+IILDEAD MT+
Sbjct: 90 D-YRKQILELNASDDRGIDVVREQVKQFA-------ETRTLF-SKGFKLIILDEADMMTQ 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQ ALRR +E Y+K RF ICNY+++ T
Sbjct: 141 AAQAALRRVIEQYTKNVRFCIICNYVNKIT 170
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 97/152 (63%), Gaps = 3/152 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + D+ EE++ L ++ PH+LFYGPPGTGKT+ L A
Sbjct: 9 KGNMPWVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARM 68
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+F P+ S VLELNASDDRGI +VR +I FA G K+IILDEAD
Sbjct: 69 MFTPKQLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGK---SHIKLIILDEAD 125
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+MT+DAQNALRR +E +++ RF ICNY+S+
Sbjct: 126 AMTKDAQNALRRVIEKFTENVRFCIICNYLSK 157
>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
Length = 331
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 96/148 (64%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 14 PWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 74 S-YRDAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACNTSSK 153
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + DV QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+ + S F F L
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPL 171
Query: 216 LDQ 218
D+
Sbjct: 172 SDE 174
>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 96/148 (64%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 14 PWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 74 S-YRDAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACNTSSK 153
>gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger]
Length = 342
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 126/220 (57%), Gaps = 16/220 (7%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
S Q S + + + KR A PV Q + PWVEKYRP ++DV+ ++++ + +E
Sbjct: 16 SAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEAN 75
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
PH+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 76 RLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFAST 135
Query: 141 -----AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195
S YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 136 KQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYT 195
Query: 196 SRCTFSALFSFLLFFMFFSL-------LDQISFDKEYIRI 228
+ + AL S F F L L I +KE + I
Sbjct: 196 HKLS-PALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNI 234
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 100/147 (68%), Gaps = 9/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ DV Q+E + L + ++T N PH+LF GPPG GKT TA+AIAH+LFG +
Sbjct: 6 WIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFG-D 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ ELNASD+RGI+VVRTKIK FA + G +KII LDEAD++T D
Sbjct: 65 SWNENFTELNASDERGIDVVRTKIKNFAKTSPIGG--------ADFKIIFLDEADALTSD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME Y+ RF CNY S+
Sbjct: 117 AQSALRRTMERYTGNCRFILSCNYSSK 143
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 9/159 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ + VLELNASDDRGI+VVR +IKTFA+ + S G +K+IILDEAD+MT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 169 EDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 204
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 104/149 (69%), Gaps = 9/149 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +++D+ E++V +LT +++ N PH+L YGPPGTGKT+T +A A +++G
Sbjct: 2 PWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGS 61
Query: 110 -ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
Y S LELNASD RGI+VVR +IK FA G R+ + K+IILDEAD+MT
Sbjct: 62 TAAYSSMALELNASDSRGIDVVRNEIKEFA------GTRQLFH--SGIKLIILDEADAMT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ ALRR +E ++K RF ICNY+S+
Sbjct: 114 SDAQFALRRVIEKHTKNARFCLICNYVSK 142
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 101/148 (68%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
P+VEKYRP ++ + +E++ + +ET PH+LF+GPPGTGKT+ +AIA L+G
Sbjct: 6 PFVEKYRPNDLESIISHDEIITTVRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYGK 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK+ +LELNASDDRGINVVR +IK+F + +G K++ILDE DSMT
Sbjct: 66 AEYKNMILELNASDDRGINVVREQIKSFCSTQ--QLMSKG------IKLVILDECDSMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRR +E Y+K TRF FICNY+S+
Sbjct: 118 SAQFALRRIVEKYTKTTRFCFICNYVSK 145
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 120/217 (55%), Gaps = 20/217 (9%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
ST+ ++P KS K +SS+ PWVEKYRP + D+ E + L N
Sbjct: 4 STSTAAPAKSNGTSSGKK----KSSEDIPWVEKYRPIILDDITGNVETIERLKVIARDGN 59
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
CPH++ G PG GKTT+ L +AH L G + YK VLELNASD+RGI+VVR KIKTFA
Sbjct: 60 CPHIIISGAPGIGKTTSILCLAHALLG-DSYKEGVLELNASDERGIDVVRNKIKTFANTK 118
Query: 142 VGSGQRRGGYPCPP--YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
V PP +KIIILDEADSMT AQ ALRRTME Y+ TRF CN+ S+
Sbjct: 119 V---------TLPPGRHKIIILDEADSMTSGAQQALRRTMEIYANSTRFALACNFSSK-I 168
Query: 200 FSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKF 236
+ S + L DQ K + I A +K+
Sbjct: 169 IEPIQSRCAILRYGKLSDQ-EILKRLVEICDAENVKY 204
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 118/195 (60%), Gaps = 22/195 (11%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ Q+++V + +E PH+LFYGPPGTGKTTT +A+A L+G
Sbjct: 22 PWVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLYGS 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGINVVR +IK FA G ++ + K++ILDEAD+MT
Sbjct: 82 S-HSSMVLELNASDDRGINVVREQIKVFA------GTKKLFH--TGVKLVILDEADNMTN 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT---FSALFSFLLFFMFFSLLDQ 218
AQ ALRR +E YS+ TRF ICNY+ SRCT F L L+ +L Q
Sbjct: 133 AAQFALRRIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQ 192
Query: 219 --ISFDKEYIRIIYA 231
+ FD + + + A
Sbjct: 193 ENVEFDDDGVAALLA 207
>gi|367014065|ref|XP_003681532.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
gi|359749193|emb|CCE92321.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
Length = 336
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 105/163 (64%), Gaps = 17/163 (10%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L PWVEKYRP + DV Q EVV + +E PH+LFYGPPGTGKT+T +A+A
Sbjct: 7 LNDGLPWVEKYRPATLDDVYGQNEVVGTVRRFIEEGQLPHLLFYGPPGTGKTSTVVALAR 66
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+++G Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEA
Sbjct: 67 EIYGKN-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEA 117
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
D+MT AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 118 DAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCT 160
>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 122/199 (61%), Gaps = 23/199 (11%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP ++DV+ +V+ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 EDNMPWVEKYRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA-------VAVGSGQRRGGYPCPPYKI 158
++G + + VLELNASDDRGI+VVR +IKTFA+ V + G +K+
Sbjct: 102 IYGAKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLGA----FKL 157
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLF 209
IILDEAD+MT AQ ALRR ME Y+ RF I NY +SRCT F FS L
Sbjct: 158 IILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFR--FSPLKE 215
Query: 210 FMFFSLLDQISFDKEYIRI 228
+L++Q+ +KE +RI
Sbjct: 216 KDIRALVNQV-IEKEQVRI 233
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 9/159 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ + VLELNASDDRGI+VVR +IKTFA+ + S G +K+IILDEAD+MT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 169 EDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 204
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 129/219 (58%), Gaps = 9/219 (4%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T + P+K++ V + PWVEKYRP + DVA ++V + PH
Sbjct: 16 TYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPH 75
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+L YGPPGTGKT+T LA+A +L+G + Y++ +LELNASDDRGI+VVR +I+ FA S
Sbjct: 76 LLLYGPPGTGKTSTILAVARKLYGSQ-YQNMILELNASDDRGIDVVRQQIQDFA-----S 129
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALF 204
Q K+++LDEAD+MT+DAQ ALRR +E Y+K TRF ICN++++ AL
Sbjct: 130 TQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKI-IPALQ 188
Query: 205 SFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLS 243
S F F+ LD + + +I A L +E GL+
Sbjct: 189 SRCTRFR-FAPLDAVHVTERLKHVIKAEGLD-VEDSGLA 225
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 98/147 (66%), Gaps = 12/147 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A P P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTA----------PIKAPFKLVILDEADNMTS 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NY+S
Sbjct: 115 DAQQALRRIMEIYAQNTRFILLANYVS 141
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 108/162 (66%), Gaps = 17/162 (10%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP + DV Q+E+V + +E PH+LFYGPPGTGKT+T +A+A +
Sbjct: 7 RSNLPWVEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALARE 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD
Sbjct: 67 IYGKN-YSNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEAD 117
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
+MT AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 118 AMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCT 159
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 105/149 (70%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ D+ Q+E+VR L + ++T N PH+LF GPPG GKT +++I ++FG E
Sbjct: 8 WIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
+++ +ELNASD+RGI+++R K+K FA +A +G +K+I LDEAD++T
Sbjct: 67 TWRNNFIELNASDERGIDIIRHKVKDFARMAPLGEAD---------FKVIFLDEADALTN 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ+ALRRTME YS TRF CNY S+
Sbjct: 118 DAQSALRRTMERYSATTRFILSCNYSSKI 146
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + DV Q+ VV + L PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 9 PWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGS 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 69 N-YRNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEADAMTN 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L +Q + ++ ++
Sbjct: 120 AAQNALRRIIERYTKNTRFCILANYAHKLT-PALLSRCTRFRFQPLSEQ-AIERRIANVL 177
Query: 230 YASTLKF 236
LK
Sbjct: 178 VKEHLKL 184
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MA L+ PWVEKYRPK +KD+ E+ + L N PHM+ G PG GKTT+
Sbjct: 1 MAAPLKLELPWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G ++Y VLELNASDDRGI VVR KIK FA ++ P +KI+I
Sbjct: 61 CLAHELLG-DMYYDAVLELNASDDRGIEVVRNKIKQFA-------HKKVSLPPGRHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
LDEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 113 LDEADSMTPGAQQALRRTMEIYSGTTRFVFACN 145
>gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
Length = 333
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 96/148 (64%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 16 PWVEKYRPNRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 76 S-YREAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTT 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 128 GAQQALRRTMEIYSNTTRFALACNTSSK 155
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 105/155 (67%), Gaps = 9/155 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L + PWVEKYRP + DV +++ + ++ PH+LFYGPPGTGKT+T +A+A
Sbjct: 24 LNNDLPWVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVAR 83
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+L+G YK ++LELNASDDRGI+VVR +IK FA + RG + +K+IILDEA
Sbjct: 84 RLYGAN-YKKQILELNASDDRGIDVVRDQIKGFA-------ETRGVF-AKGFKLIILDEA 134
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
D MT+ AQ ALRR +E Y++ RF ICNY+++ T
Sbjct: 135 DMMTQAAQAALRRVIEQYTRNVRFCIICNYVNKIT 169
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 101/150 (67%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V +E+++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+K LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -NTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSK 142
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 11/148 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP + DV QEE+V+ L + + + N PH+LF GPPG GKT A+++ +LFG E
Sbjct: 51 WIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGEE 110
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ +ELNASD+RGI+VVR K+K FA +A +G+ + +K+I LDEAD++T
Sbjct: 111 -WRGNFIELNASDERGIDVVRHKVKDFARIAPLGNAE---------FKVIFLDEADALTN 160
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ+ALRRTME YS + RF CNY S+
Sbjct: 161 DAQSALRRTMERYSSICRFVLSCNYSSK 188
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 10/185 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + + PWVEKYRP+++ D+ ++++ + + PH+LFYGPPGTG+T+T LA
Sbjct: 8 PLQERNLPWVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR + +FA+ + +RG +K++ILD
Sbjct: 68 AKQLYKEKEFTSMVLELNASDDRGIDVVRGPVLSFASTR--TIFKRG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLL-DQISF 221
EAD MT+DAQNALRR +E Y++ TR ICNY+S+ AL S F F L DQ+
Sbjct: 120 EADHMTQDAQNALRRVIEKYTENTRLCLICNYLSKI-IPALQSRCTRFRFGPLSPDQMIP 178
Query: 222 DKEYI 226
EY+
Sbjct: 179 RLEYV 183
>gi|307209915|gb|EFN86693.1| Replication factor C subunit 2 [Harpegnathos saltator]
Length = 351
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 104/168 (61%), Gaps = 8/168 (4%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
T+ P S ++VK K SS PW+EKYRP+ D+ E+ V L + N P++
Sbjct: 13 TEILPSTSSNDVKVKEKDSKSSSLPWIEKYRPQVFPDIVGNEDTVSRLAVFAQHGNTPNI 72
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
+ GPPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA
Sbjct: 73 IIAGPPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA------- 124
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
Q++ P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN
Sbjct: 125 QKKVNLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACN 172
>gi|350401447|ref|XP_003486155.1| PREDICTED: replication factor C subunit 2-like [Bombus impatiens]
Length = 351
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 105/176 (59%), Gaps = 8/176 (4%)
Query: 18 NFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL 77
N + ++ P S +K K ++ PW+EKYRP+ D+ E+ V L+
Sbjct: 5 NIVGEPMNIEAVPSTSGYNIKNKEKDKKSANLPWIEKYRPQIFSDIVGNEDTVSRLSVFA 64
Query: 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137
E NCP+++ GPPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK F
Sbjct: 65 EHGNCPNIIIAGPPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMF 123
Query: 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
A Q+R +KIIILDEADSMT+ AQ ALRRTME YS TRF CN
Sbjct: 124 A-------QKRVNLAKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 172
>gi|389625115|ref|XP_003710211.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|351649740|gb|EHA57599.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|440464833|gb|ELQ34198.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
Length = 404
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 107/179 (59%), Gaps = 25/179 (13%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + ++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 41 EDSLPWVEKYRPVSLADVSGHQDILATVNKFVDANRLPHLLLYGPPGTGKTSTILALARR 100
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-----------------AVGSGQRR 148
++G + + VLELNASDDRGI+VVR +IKTFA+ A S
Sbjct: 101 IYGADNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPS 160
Query: 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
P P YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 161 ATRPTPSYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCT 219
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 99/147 (67%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NY+S
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVS 142
>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans CBS 6340]
Length = 322
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 95/152 (62%), Gaps = 8/152 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A L+ PWVEKYRP +KD+ EE + L + N PH++ G PG GKTT+
Sbjct: 3 ANALKLELPWVEKYRPHLLKDIVGNEETITRLQQIAQDGNMPHLIISGLPGIGKTTSVSC 62
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+IL
Sbjct: 63 LAHELLG-NAYSQAVLELNASDDRGIDVVRNQIKQFA-------QKKCSLPPGRHKIVIL 114
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
DEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 115 DEADSMTAGAQQALRRTMEIYSNTTRFAFACN 146
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 107/155 (69%), Gaps = 8/155 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 8 PLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLAS 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + + VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 AKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EAD+MT DAQNALRR +E Y++ TRF ICNY+S+
Sbjct: 120 EADAMTRDAQNALRRVIEKYTENTRFCLICNYLSK 154
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 101/150 (67%), Gaps = 9/150 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGP 114
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 115 A-YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQ+ALRR +E ++K RF +CNY+++ T
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKIT 195
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 101/150 (67%), Gaps = 9/150 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGP 114
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 115 A-YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQ+ALRR +E ++K RF +CNY+++ T
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKIT 195
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 101/150 (67%), Gaps = 9/150 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGP 114
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 115 A-YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQ+ALRR +E ++K RF +CNY+++ T
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKIT 195
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 106/165 (64%), Gaps = 15/165 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ FA+ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFAST---SSFYFASAPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
EAD M+ DAQ ALRR +E Y+K RF +CN+I SRCT
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCT 177
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 105/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 15 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKD 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 75 KEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSK 154
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 105/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 15 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKD 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 75 KEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSK 154
>gi|340729148|ref|XP_003402870.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 351
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 102/164 (62%), Gaps = 8/164 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S +K K S+ PW+EKYRP+ D+ E+ V L+ E NCP+++ G
Sbjct: 17 PSTSGYNIKNKEKDKKSSNLPWIEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP ++K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 77 PPGVGKTTTILCLARILLGP-VFKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
+KIIILDEADSMT+ AQ ALRRTME YS TRF CN
Sbjct: 129 NLAKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 172
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/193 (45%), Positives = 120/193 (62%), Gaps = 9/193 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+G +
Sbjct: 34 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y + +LELNASDDRGI+VVR +I+ FA S Q P K+++LDEAD+MT+D
Sbjct: 94 -YHNMILELNASDDRGIDVVRQQIQDFA-----STQSLSFGVKPSVKLVLLDEADAMTKD 147
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ ALRR +E Y+K TRF ICN++++ AL S F F+ LD + + +I
Sbjct: 148 AQFALRRVIEKYTKSTRFALICNHVNKI-IPALQSRCTRFR-FAPLDAVHVTERLKHVIN 205
Query: 231 ASTLKFLEGFGLS 243
A L ++ GLS
Sbjct: 206 AERLD-VQDSGLS 217
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 104/158 (65%), Gaps = 14/158 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 38 PWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGV 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y + +LELNASDDRGI+VVR +I+ FA+ S + K+++LDEAD+MT+
Sbjct: 98 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSA-----VKLVLLDEADAMTK 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
DAQ ALRR +E Y+K TRF ICN++ SRCT
Sbjct: 152 DAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCT 189
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 102/162 (62%), Gaps = 10/162 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QE +V L + +E + PH+LF GP GTGK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
++I+ LDEADS+T++AQ ALRRTME +S TRF CNY S+
Sbjct: 113 FRIVFLDEADSLTDEAQAALRRTMEQFSDNTRFILSCNYSSK 154
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ ++ ++++ + L+ PH+LFYGPPGTGKT+T LA A +L+
Sbjct: 11 PWVEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTILACARRLYAD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI +VR + FA+ + +RG +K++ILDEAD+MT
Sbjct: 71 REFNSMVLELNASDDRGIGIVRGPVLQFASTR--TIFKRG------FKLVILDEADAMTG 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR ME +++ TRF ICNY+S+
Sbjct: 123 DAQNALRRVMEKFTENTRFCLICNYLSK 150
>gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group]
gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group]
gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group]
Length = 335
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 96/148 (64%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ L++AH+L GP
Sbjct: 18 PWVEKYRPTRVADVVGNSDAVARLQVIARDGNMPNLILSGPPGTGKTTSILSLAHELLGP 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 78 S-YREAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 130 GAQQALRRTMEIYSNTTRFALACNTSSK 157
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 106/165 (64%), Gaps = 15/165 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ FA+ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFAST---SSFYFASTPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
EAD M+ DAQ ALRR +E Y+K RF +CN+I SRCT
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCT 177
>gi|219127681|ref|XP_002184059.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404290|gb|EEC44237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 349
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 105/170 (61%), Gaps = 15/170 (8%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
++++ E S + K+ MA PWVEKYRP+ ++DV EE V L T N P++
Sbjct: 12 SEANKENSVAKAKKSMAGY---QVPWVEKYRPRVLEDVVGNEETVSRLRAISRTGNLPNL 68
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
+ GPPGTGKTT+ A+A QL G YK VLELNASD RGI+VVR +IK+FA V
Sbjct: 69 ILAGPPGTGKTTSVHALARQLLGAS-YKDAVLELNASDARGIDVVRNRIKSFAMNKV--- 124
Query: 146 QRRGGYPCPP--YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
PP +KIIILDEADSMT AQ ALRRTME YS TRF CN
Sbjct: 125 ------TLPPGRHKIIILDEADSMTSAAQQALRRTMELYSNTTRFCLACN 168
>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
Length = 382
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 104/178 (58%), Gaps = 14/178 (7%)
Query: 18 NFTQKFSTTQSSPEKSEDEVKRK--MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTN 75
N T QS PE ++K+ M+ L PWVEKYRP+ + D+ +E + L
Sbjct: 39 NLIXSIITLQSFPE----DIKKSLIMSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQ 94
Query: 76 TLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135
+ N PHM+ G PG GKTT+ +AH+L G Y VLELNASDDRGI VVR +IK
Sbjct: 95 IAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIXVVRNQIK 153
Query: 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
FA Q++ P +KI+ILDEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 154 HFA-------QKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACN 204
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 100/150 (66%), Gaps = 9/150 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ Q+ +V+ L + ++T + PH+LF GPPG GKTT AL + +LF
Sbjct: 12 EKPWVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-EHWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T+DAQ ALRR ME +S RF CNY S+
Sbjct: 123 TQDAQQALRRMMEMFSNNVRFILSCNYSSK 152
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GKTT+A AIA L+G +
Sbjct: 19 WIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R P Y II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDERGIDVVRDRIKNFA--------RSSFNPERGYTIIFLDEADSLTND 129
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D + ++ I
Sbjct: 130 AQSALRRTMEEFSDKTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDD-AIAEQTRDIAE 187
Query: 231 ASTLKFLEGFGLSLTYS 247
A ++ EG +L Y+
Sbjct: 188 AEGIELTEGGLDALVYA 204
>gi|406607522|emb|CCH40993.1| Replication factor C subunit 2 [Wickerhamomyces ciferrii]
Length = 316
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 87/108 (80%), Gaps = 2/108 (1%)
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRG 149
TGKT+T LA+ +L+GPEL K+RVLELNASD+RGI++VR K+K FA + V S +
Sbjct: 14 STGKTSTILALTKELYGPELSKTRVLELNASDERGISIVREKVKNFARLTVSNPSSEDLE 73
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNYI+R
Sbjct: 74 KYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYITR 121
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EGDEQTAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+ + S F F L
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPL 171
Query: 216 LDQ 218
D+
Sbjct: 172 SDE 174
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DVA ++++ + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 32 PWVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLYGA 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ Y++ +LELNASDDRGI VVR +I+ FA+ ++ G P K++ILDEAD+MT
Sbjct: 92 Q-YQNMILELNASDDRGIEVVRQQIQDFASTKSISFG------PKVNVKLVILDEADAMT 144
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
+DAQ ALRR +E Y+K TRF ICNY S+ AL S F F L
Sbjct: 145 KDAQFALRRVIEKYTKSTRFCLICNYASKI-IPALQSRCTRFRFAPL 190
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ ++ + L N P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 18 PWVEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGS 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK V+ELNASDDRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 78 N-YKEGVIELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIIILDEADSMTG 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME +S TRF CN ++ + S F L DQ + +R++
Sbjct: 130 GAQQALRRTMEIFSNSTRFALACNTSAKI-IEPIQSRCAIVRFSKLSDQEILGR-LMRVV 187
Query: 230 YASTLKFL-EGF 240
A + ++ EG
Sbjct: 188 EAEKVAYVPEGL 199
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 105/158 (66%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV + + + N +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 31 PWVEKYRPVALSDVVSHDGITTTIENFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGN 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK ++LELNASDDRGI+VVR +IK FA + RR +K+IILDEAD MT+
Sbjct: 91 D-YKRQILELNASDDRGIDVVREQIKQFAETR--TLFRRS------FKLIILDEADMMTQ 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ+ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 142 AAQSALRRIIEQYTKNVRFCIICNYVNKIAPAIQSRCT 179
>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
Length = 343
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV ++ + L + NCPH+L G PG GKTT+ L +A L G
Sbjct: 23 PWVEKYRPLRLDDVVGNKDTIDRLKVIQKDGNCPHLLISGLPGIGKTTSVLCLARALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RG++VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 82 EAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPPGRHKIIILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 135 AAQQALRRTMEIYSNTTRFCFACN 158
>gi|383858073|ref|XP_003704527.1| PREDICTED: replication factor C subunit 2-like [Megachile
rotundata]
Length = 351
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 99/156 (63%), Gaps = 8/156 (5%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K+K + + PW+EKYRP+ D+ E+ V L+ + NCP+++ GPPG GKTT
Sbjct: 25 KKKQKDLKTAHLPWIEKYRPQVFSDIVGNEDTVSRLSVFAKNGNCPNIIIAGPPGVGKTT 84
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
T L +A L GP +K VLELNAS+DRGI+VVR KIK FA Q+R +K
Sbjct: 85 TILCLARILLGPA-FKEAVLELNASNDRGIDVVRNKIKMFA-------QKRVNLDKGKHK 136
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
IIILDEADSMT+ AQ ALRRTME YS TRF CN
Sbjct: 137 IIILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 172
>gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 93/148 (62%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 11 PWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGK 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 TMYDQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 124 GAQQALRRTMEIYSNTTRFAFACNQSSK 151
>gi|356514052|ref|XP_003525721.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
Length = 331
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 93/144 (64%), Gaps = 7/144 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 13 PWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGG 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K VLELNASDDRGI+VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 73 PNCKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLTPGRHKIVILDEADSMTT 125
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACN 149
>gi|356563210|ref|XP_003549857.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
Length = 332
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 93/144 (64%), Gaps = 7/144 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 14 PWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGG 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K VLELNASDDRGI+VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 74 PNCKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLTPGRHKIVILDEADSMTT 126
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 127 GAQQALRRTMEIYSNTTRFALACN 150
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 9/192 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA+
Sbjct: 33 PPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAV 92
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+GP+ Y++ +LELNASDDRGI+VVR +I+ FA+ S + K+++LD
Sbjct: 93 ARKLYGPK-YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS------VKLVLLD 145
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFD 222
EAD+MT+DAQ ALRR +E Y+K TRF I N++++ AL S F F+ LD +
Sbjct: 146 EADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKI-IPALQSRCTRFR-FAPLDGVHMS 203
Query: 223 KEYIRIIYASTL 234
+ +I A L
Sbjct: 204 QRLKHVIEAERL 215
>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
Length = 328
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 96/144 (66%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E +V L + N P+++ GPPG GKTT+ A+A +L G
Sbjct: 11 PWVEKYRPQILADIVGNENIVERLKVIAKEGNVPNIILSGPPGCGKTTSVWALARELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ K VLELNASD+RGI+VVR +IKTFA Q R P +KIIILDEADSMTE
Sbjct: 71 KV-KDAVLELNASDERGIDVVRNRIKTFA-------QTRVTLPEGRHKIIILDEADSMTE 122
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 123 GAQQALRRTMEIYSKTTRFALACN 146
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 98/150 (65%), Gaps = 5/150 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + +E PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI+VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAE----SKNHYNTCEKTSLKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQNA+RR ME Y+K RF +CNY+++ T
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 106/173 (61%), Gaps = 11/173 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 128
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
AQ+ALRRTME +S TRF CNY S+ + S F F L D D+
Sbjct: 129 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDDAIADQ 180
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 101/150 (67%), Gaps = 9/150 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +L+G
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYG- 113
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 114 SAYKKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQ+ALRR +E ++K RF +CNY+++ T
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKIT 195
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 133/228 (58%), Gaps = 29/228 (12%)
Query: 24 STTQSSPEK-SEDEVKRKMAPVL-------QSSQPWVEKYRPKQVKDVAHQEEVVRVLTN 75
ST QSS K S D K ++ + + PWVEKYRP + +V ++++ +
Sbjct: 12 STAQSSAMKFSSDNTTSKGKKIVADLPIGAEDNLPWVEKYRPNSLDEVQGHQDILATINR 71
Query: 76 TLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135
+++ PH+L YGPPGTGKTTT LA+A +++G + + VLELNASDDRGI+VVR +IK
Sbjct: 72 FIDSHRLPHLLLYGPPGTGKTTTILALARRIYGIKNMRQMVLELNASDDRGIDVVREQIK 131
Query: 136 TFA------AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
TFA +VA + + +K+IILDEAD+MT AQ ALRR ME Y+ TRF
Sbjct: 132 TFASTKQIFSVAAPAAKENS---LGAFKLIILDEADAMTATAQMALRRIMEKYTANTRFC 188
Query: 190 FICNY--------ISRCT-FSALFSFLLFFMFFSLLDQISFDKEYIRI 228
I NY +SRCT F FS L SL+D++ + E +RI
Sbjct: 189 IIANYTHKLSPALLSRCTRFR--FSPLKEADIRSLVDKV-IEAENVRI 233
>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
SB210]
Length = 345
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 103/157 (65%), Gaps = 16/157 (10%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-TANCPHMLFYGPPGTGKTTTALAIAH 104
Q + PWVEKYRP+ + +V E +V + +E P++LFYGPPGTGKT+ +A+A
Sbjct: 15 QQNIPWVEKYRPENLDNVISHEYIVATIKKFIEEDKKLPNLLFYGPPGTGKTSLIVALAK 74
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA----VGSGQRRGGYPCPPYKIII 160
QL+G YK VLELNASDDRGI+VVR +IKTFA+ A VG G K+II
Sbjct: 75 QLYGKN-YKQLVLELNASDDRGIDVVREQIKTFASTANFGMVGKGT----------KLII 123
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEADSMT AQ ALRR +E YS RF ICNY+S+
Sbjct: 124 LDEADSMTNQAQFALRRIIEKYSSNARFCMICNYVSK 160
>gi|452981800|gb|EME81559.1| hypothetical protein MYCFIDRAFT_188590 [Pseudocercospora fijiensis
CIRAD86]
Length = 367
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 109/166 (65%), Gaps = 12/166 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 41 EDNLPWVEKYRPNSLSDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARK 100
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGS-GQRRGGYPCPPYKIIIL 161
++G + + VLELNASDDRGI+VVR +IKTF++ + GS + + YK+IIL
Sbjct: 101 IYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSKQDDSMATYKLIIL 160
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 161 DEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCT 206
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 102/147 (69%), Gaps = 10/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++DV QE++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 16 WIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGDD 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + GGY Y+II LDEADS+T D
Sbjct: 76 -WRGNFLELNASDERGIDVVRDRIKNFARASF------GGY---DYRIIFLDEADSLTSD 125
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S TRF CNY S+
Sbjct: 126 AQSALRRTMEQFSDNTRFVLSCNYSSK 152
>gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
Length = 321
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 109/194 (56%), Gaps = 10/194 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P L PWVEKYRPKQ+ D EE + L + N PH++ G PG GKTT+ +
Sbjct: 4 PPLTLELPWVEKYRPKQLSDTVGNEETIHRLQQIAKDGNMPHLIISGLPGIGKTTSIHCL 63
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
AH+L G + Y VLELNASDDRGI+VVR +IK FA Q++ +KIIILD
Sbjct: 64 AHELLG-DSYSQGVLELNASDDRGIDVVRNQIKQFA-------QKKCHLEPGKHKIIILD 115
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFD 222
EADSMT AQ ALRRTME YS TRF F CN S L S + L D+
Sbjct: 116 EADSMTAGAQQALRRTMELYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYSKLSDEQVL- 173
Query: 223 KEYIRIIYASTLKF 236
K + II A +++
Sbjct: 174 KRLLEIIKAENVQY 187
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 117/184 (63%), Gaps = 14/184 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ ++++ + + PH+LFYGPPGTGKT+T LA A +++G
Sbjct: 30 PWVEKYRPSSLDELISHKDIISTIDRFITEDRVPHLLFYGPPGTGKTSTILACAKKMYGN 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +S VLELNASDDRGI VVR +IK FA+ + GG K++ILDEAD+MT
Sbjct: 90 RM-QSMVLELNASDDRGIGVVREQIKEFASTRTITSS--GG-----TKLVILDEADAMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL-----LDQISFDKE 224
DAQ ALRR +E Y++ TRF ICNY+S+ T A+ S F F L LD+++F E
Sbjct: 142 DAQAALRRVIEKYTRNTRFCLICNYVSKIT-PAIQSRCTRFRFAPLSSEQMLDRLNFVIE 200
Query: 225 YIRI 228
R+
Sbjct: 201 SERV 204
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 106/173 (61%), Gaps = 11/173 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 128
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
AQ+ALRRTME +S TRF CNY S+ + S F F L D D+
Sbjct: 129 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDDAIADQ 180
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 102/161 (63%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q E+V L + N PHMLF GPPGTGKTT A +AH L+G
Sbjct: 8 WTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGDN 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI V+R+K+K FA V P+KII+LDEAD+MT D
Sbjct: 68 -YRQYILELNASDERGIEVIRSKVKEFARTRVVGN--------VPFKIILLDEADNMTAD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRR ME Y+ TRF I NY S+ + +A+F F
Sbjct: 119 AQQALRRLMELYTASTRFILIANYPSKIIEPIQSRTAVFRF 159
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
++I+ LDE+DS+T+DAQ+ALRRTME +S TRF CNY S+ + S F F L
Sbjct: 113 FRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPL 171
Query: 216 LDQ 218
D+
Sbjct: 172 SDE 174
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV E + L NCPH++ G PG GKTT+ +AHQ+ G
Sbjct: 18 PWVEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQMLG- 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 77 EAYKDGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPGRHKIVILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ ALRRTME YS TRF CN +S + S + L DQ
Sbjct: 130 GAQQALRRTMEIYSNTTRFALACN-MSNKIIEPIQSRCAILRYAKLRDQ 177
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 119/194 (61%), Gaps = 9/194 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEK+RPK + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 41 PWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGT 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + +LELNASDDRGI+VVR +I+ FA+ S + K+++LDEAD+MT+
Sbjct: 101 N-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKAS-----VKLVLLDEADAMTK 154
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
DAQ ALRR +E Y+K TRF ICN++++ AL S F F+ LD + +I
Sbjct: 155 DAQFALRRVIEKYTKNTRFALICNHVNKI-IPALQSRCTRFR-FAPLDNFHVTERLRYVI 212
Query: 230 YASTLKFLEGFGLS 243
A L EG GL+
Sbjct: 213 EAERLDVTEG-GLA 225
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
++I+ LDE+DS+T+DAQ+ALRRTME +S TRF CNY S+ + S F F L
Sbjct: 113 FRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPL 171
Query: 216 LDQ 218
D+
Sbjct: 172 SDE 174
>gi|403217950|emb|CCK72442.1| hypothetical protein KNAG_0K00740 [Kazachstania naganishii CBS
8797]
Length = 319
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 96/149 (64%), Gaps = 7/149 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L+ PWVEKYRP ++ D+ E+ + L ++ N PHM+ G PG GKTT+ +A+
Sbjct: 3 LKLELPWVEKYRPHKLDDIVGNEDTIERLKEIVKDGNMPHMIISGLPGIGKTTSIQCLAN 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
++ G +L S VLELNASDDRGI+VVR +IK FA V + P +KI+ILDEA
Sbjct: 63 EMLGEKLLGSAVLELNASDDRGIDVVRNQIKHFAQV-------KCHLPPGKHKIVILDEA 115
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICN 193
DSMT AQ ALRRTME YS TRF F CN
Sbjct: 116 DSMTSGAQQALRRTMELYSNTTRFAFACN 144
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 9/202 (4%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
P + + PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA
Sbjct: 30 GPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILA 89
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A +L+G E + + +LELNASDDRGI+VVR +I+ FA+ S + K+++L
Sbjct: 90 VARKLYG-EQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSS-----VKLVLL 143
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISF 221
DEAD+MT+DAQ ALRR +E Y+K TRF ICN++++ AL S F F+ LD +
Sbjct: 144 DEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKI-IPALQSRCTRFR-FAPLDAVHV 201
Query: 222 DKEYIRIIYASTLKFLEGFGLS 243
+ +I A L E GL+
Sbjct: 202 TERLKHVINAEKLDVSES-GLA 222
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 101/150 (67%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + ++ Q+E++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 DD-WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSK 142
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 98/150 (65%), Gaps = 5/150 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + +E PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI+VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAE----SKNHYNTCEKTTLKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQNA+RR ME Y+K RF +CNY+++ T
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV ++ + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 22 PWVEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG++VVR KIKTFA Q++ P +KI+ILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPAGRHKIVILDEADSMTP 133
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 134 AAQQALRRTMEIYSNTTRFCFACN 157
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 16 PWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKD 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 76 REFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 128 DAQNALRRVIEKFTENTRFCLICNYLSK 155
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 117/183 (63%), Gaps = 10/183 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + + + + L + PH+LFYGPPGTGKT+T +A+A +L+G
Sbjct: 24 PWVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTSTIMALAARLYGA 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+++ VLELNASDDRGI+VVR +IK FA+ V S Q+ +K++ILDEAD+MT
Sbjct: 84 S-FRNNVLELNASDDRGIDVVRGQIKAFASTRNVFSTQK------DTFKLVILDEADAMT 136
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRI 228
+ AQ ALRR ME Y++ RF ICNY+++ A+ S F FS LD++ +++ +
Sbjct: 137 QAAQAALRRVMEQYTRNVRFCIICNYVNK-IIPAIQSRCTRFR-FSPLDRVQVERQIDSV 194
Query: 229 IYA 231
I A
Sbjct: 195 IAA 197
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 108/164 (65%), Gaps = 20/164 (12%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVE++RP ++ D+ QE V L + + PH+LFYGPPG GKTT ALA+A +L+G +
Sbjct: 9 WVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYG-D 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++S VLELNASD+RGI+V+R K+K FA + +G P P+K++ILDEAD+MT D
Sbjct: 68 SWRSSVLELNASDERGIDVIREKVKEFAR-TIPTG------PV-PFKLVILDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYI--------SRCTFSALFSF 206
AQ ALRR ME Y+ TRF + NYI SRC A+F F
Sbjct: 120 AQQALRRIMEMYASTTRFILLANYISGIIEPIQSRC---AIFRF 160
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 107/155 (69%), Gaps = 8/155 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+++ D+ +++ + + PH+L YGPPGTGKT+T LA
Sbjct: 8 PLQSRNLPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 ARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 154
>gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 389
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 121/193 (62%), Gaps = 13/193 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ +++ + ++T PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPNTLEDVSGHHDILATINKFVDTNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEA 164
++G + VLELNASDDRGI+VVR +IKTFA+ + S +K+I+LDEA
Sbjct: 100 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASARAGAGFKLIVLDEA 159
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFFMFFSL 215
D+MT AQ ALRR ME Y+ TRF I NY +SRCT F FS L L
Sbjct: 160 DAMTSTAQMALRRIMEKYTVNTRFCIIANYAHKLSPALLSRCTRFR--FSPLKEADIRVL 217
Query: 216 LDQISFDKEYIRI 228
+D++ ++E+++I
Sbjct: 218 VDKV-VEEEHVKI 229
>gi|444320537|ref|XP_004180925.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
gi|387513968|emb|CCH61406.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
Length = 324
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KD+ E + L N PHM+ G PG GKTT+ +AH+L G
Sbjct: 13 PWVEKYRPKVLKDIVGNNETIDRLQQIALDGNMPHMIISGMPGIGKTTSIHCLAHELLGD 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI VVR +IK FA Q++ P KIIILDEADSMT
Sbjct: 73 S-YKQAVLELNASDDRGIEVVRNQIKHFA-------QKKCHLPPGKNKIIILDEADSMTS 124
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 125 GAQQALRRTMELYSNTTRFAFACN 148
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 94/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV ++ + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 21 PWVEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG++VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPPGRHKIIILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 133 AAQQALRRTMEIYSNTTRFCFACN 156
>gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|149388978|gb|EAZ62975.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 101/161 (62%), Gaps = 9/161 (5%)
Query: 37 VKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKT 96
+KR P L+ PWVEKYRP+++ DV EE + L + N PHM+ G PG GKT
Sbjct: 1 MKRTDEPKLEL--PWVEKYRPRRLDDVVGNEETIERLKLIAKDGNMPHMIISGLPGIGKT 58
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156
T+ +A++L G + Y+ LELNASDDRGI+VVR +IK FA Q + P +
Sbjct: 59 TSIHCLAYELLGDDYYQQATLELNASDDRGIDVVRNRIKQFA-------QTKIKLPPGRH 111
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
KIIILDEADSMT AQ ALRRTME YS TRF F CN S+
Sbjct: 112 KIIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSK 152
>gi|389615147|dbj|BAM20564.1| replication factor C subunit 3 [Papilio polytes]
Length = 184
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 104/158 (65%), Gaps = 16/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWV KYRP +++ + +++++ + ++ PH+LFYGPPGTGKT+T LA A Q++ P
Sbjct: 11 PWVXKYRPSKLEXLVSHDDIIKTIGQFMKENQLPHLLFYGPPGTGKTSTILACARQMYTP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I +FA+ R + P K+IILDEAD+MT
Sbjct: 71 QQFNSMVLELNASDDRGIGIVRGQILSFAST-------RTIFKAGP-KLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
DAQNALRR +E Y+ RF ICNY+ SRCT
Sbjct: 123 DAQNALRRIIEKYTDNVRFCIICNYLGKIIPALQSRCT 160
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 105/166 (63%), Gaps = 12/166 (7%)
Query: 32 KSEDEVKRKMAPVLQSSQ----PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
++E + K+ AP SS PWVEKYRP ++ ++ EE V L N P+++
Sbjct: 14 QTEVQPKKDEAPAKLSSSGYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIII 73
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
GPPGTGKTT+ L +A L GP + K VLELNAS+DRGI+VVR KIK FA Q+
Sbjct: 74 AGPPGTGKTTSILCLARALLGPAM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQ 125
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
+ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN
Sbjct: 126 KVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 171
>gi|448509973|ref|ZP_21615854.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
gi|445696314|gb|ELZ48405.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
Length = 208
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
++I+ LDE+DS+T+DAQ+ALRRTME +S TRF CNY S+ + S F F L
Sbjct: 113 FRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPL 171
Query: 216 LDQ 218
D+
Sbjct: 172 SDE 174
>gi|365758549|gb|EHN00386.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 187
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ +L PWVEKYRPK + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKILTLQLPWVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KIII
Sbjct: 61 CLAHELLGNS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPQGRHKIII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
LDEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACN 145
>gi|449301028|gb|EMC97039.1| hypothetical protein BAUCODRAFT_147217 [Baudoinia compniacensis
UAMH 10762]
Length = 397
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 120/200 (60%), Gaps = 7/200 (3%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
S Q S ++ + KR A P+ + + PWVEKYRP + DV+ +++ + +++
Sbjct: 18 SDIQFSAANTDTKGKRSAANLPIEAEDNLPWVEKYRPASLSDVSGHHDILATINKFVDSN 77
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA- 139
PH+L YGPPGTGKT+T LA+A +++G + VLELNASDDRGI VVR +IKTF++
Sbjct: 78 RLPHLLLYGPPGTGKTSTVLALARRIYGNRNMRQMVLELNASDDRGIEVVREQIKTFSST 137
Query: 140 --VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ GS + +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +
Sbjct: 138 KQIFAGSFDKTQQDSIANFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHK 197
Query: 198 CTFSALFSFLLFFMFFSLLD 217
+ AL S F F L D
Sbjct: 198 LS-PALLSRCTRFRFSPLKD 216
>gi|396495754|ref|XP_003844622.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
Length = 409
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 128/223 (57%), Gaps = 21/223 (9%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEV------KRKMAPVLQSSQPWVEKYRP 57
+FG K GK + N P ++ED + + + PVL ++ VEKYRP
Sbjct: 20 SFGGDQKKGKRTAANL----------PIEAEDSLPWYGLSQPVLEPVLMINR--VEKYRP 67
Query: 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117
+ DV ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VL
Sbjct: 68 NSLDDVEGHQDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVL 127
Query: 118 ELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
ELNASDDRGI+VVR +IKTF++ + + G +K+IILDEAD+MT AQ AL
Sbjct: 128 ELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDTALATFKLIILDEADAMTATAQMAL 187
Query: 176 RRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
RR ME Y+ TRF I NY + + AL S F F L DQ
Sbjct: 188 RRIMEKYTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKDQ 229
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 122/198 (61%), Gaps = 22/198 (11%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + +V ++++ + +++ PH+L YGPPGTGKTTT LA+A +
Sbjct: 41 EDNLPWVEKYRPSSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARR 100
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGYPCPPYKII 159
++G + + VLELNASDDRGI+VVR +IKTFA +VA + + G +K+I
Sbjct: 101 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAKENSLGA----FKLI 156
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLFF 210
ILDEAD+MT AQ ALRR ME Y+ RF I NY +SRCT F FS L
Sbjct: 157 ILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFR--FSPLKEV 214
Query: 211 MFFSLLDQISFDKEYIRI 228
SL+D++ + E +RI
Sbjct: 215 DIRSLVDKV-IEAENVRI 231
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 100/158 (63%), Gaps = 17/158 (10%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +K++ +Q+E+V L+ + N PH+LF GPPGTGKTT A A+AH L+G
Sbjct: 10 WTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y +LELNASD+RGI+ +R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 70 -YTQYMLELNASDERGIDTIREKVKEFA--------RSKTPPDIPFKIVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNY--------ISRCTF 200
AQ ALRR ME YS TRF N+ SRC F
Sbjct: 121 AQQALRRLMELYSANTRFILAANFPSKIIDPIQSRCAF 158
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 107/157 (68%), Gaps = 8/157 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP ++ PWVEKYRP+ + ++ +++ + + PH+L YGPPGTGKT+T L
Sbjct: 1 MAPAGSANLPWVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A A QL+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++I
Sbjct: 61 ACARQLYREREFSSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
LDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 113 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 149
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 102/162 (62%), Gaps = 10/162 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QE +V L + ++ + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLGDIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREVYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSK 154
>gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 323
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+++D+ EE V L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMILSGLPGIGKTTSIHCLAYELLGE 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 70 EYYHQATMELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRQKIIILDEADSMTP 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACNQSSK 150
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 104/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV Q EVV + L PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 125 AAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCT 162
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 106/165 (64%), Gaps = 15/165 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ F++ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFSST---SSFYFASAPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
EAD M+ DAQ ALRR +E Y+K RF +CN+I SRCT
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCT 177
>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
Length = 443
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 118/190 (62%), Gaps = 13/190 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++DV+ +++ + ++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPNTLEDVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGV 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILDEADS 166
+ + VLELNASDDRGI+VVR +IKTFA+ + + + +K+IILDEAD+
Sbjct: 106 KNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPSTKSESTLGAFKLIILDEADA 165
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCTFSALFSFLLFFMFFSLLDQ 218
MT AQ ALRR ME Y+ TRF I NY +SRCT FS L L+DQ
Sbjct: 166 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT-RFRFSPLKEEDIRVLVDQ 224
Query: 219 ISFDKEYIRI 228
+ +KE +RI
Sbjct: 225 V-VEKERVRI 233
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 109/167 (65%), Gaps = 16/167 (9%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGK +T LA
Sbjct: 8 PLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + + VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 AKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCTFS 201
EAD+MT DAQNALRR +E Y++ TRF ICNY+ SRCT S
Sbjct: 120 EADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRS 166
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 25 PWVEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA Q++ P KI+ILDEADSMT
Sbjct: 84 DAYKEGVLELNASDERGIDVVRNKIKTFA-------QKKVTLPPGRQKIVILDEADSMTS 136
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME Y+ TRF CN
Sbjct: 137 GAQQALRRTMEIYANTTRFALACN 160
>gi|358368166|dbj|GAA84783.1| activator 1 subunit 3 [Aspergillus kawachii IFO 4308]
Length = 402
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 18/191 (9%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR A PV Q + PWVEKYRP ++DV+ ++++ + +E P
Sbjct: 19 QFSSDNTNGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEANRLP 78
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---- 139
H+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 79 HLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 138
Query: 140 ---VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY-- 194
S YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 139 FSMAPSSSTSTSTSSNLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTH 198
Query: 195 ------ISRCT 199
+SRCT
Sbjct: 199 KLSPALLSRCT 209
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 104/162 (64%), Gaps = 16/162 (9%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q+EVV L +E N PHMLF GPPGTGKTT A +AH L+G +
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASD+R I V+R K+K FA A VG P+KI++LDEAD+MT
Sbjct: 69 -YRKYMLELNASDERKIEVIRGKVKEFARARVVGD---------VPFKIVLLDEADNMTA 118
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
DAQ ALRR ME YS TRF NY S+ + +A+F F
Sbjct: 119 DAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRF 160
>gi|451854539|gb|EMD67832.1| hypothetical protein COCSADRAFT_112005 [Cochliobolus sativus
ND90Pr]
Length = 394
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 122/219 (55%), Gaps = 27/219 (12%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPW--VEKYRPKQVK 61
+FG K GK + N P ++ED + PW VEKYRP +
Sbjct: 19 SFGGDSKKGKRSAANL----------PVEAEDTL------------PWYVVEKYRPASLD 56
Query: 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121
DV ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNA
Sbjct: 57 DVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNA 116
Query: 122 SDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
SDDRGI VVR +IKTF++ + + G +K+IILDEAD+MT AQ ALRR M
Sbjct: 117 SDDRGIEVVREQIKTFSSTKQIFSAAPKTGDSSLATFKLIILDEADAMTSTAQMALRRIM 176
Query: 180 ETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
E Y+ TRF I NY + + AL S F F L DQ
Sbjct: 177 EKYTANTRFCIIANYTHKLS-PALLSRCTRFRFSPLKDQ 214
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 103/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGS 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ ++LELNASDDRGI+VVR +IK FA + R + +K+IILDEAD MT
Sbjct: 100 E-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-SKGFKLIILDEADMMTT 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 151 AAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCT 188
>gi|384501081|gb|EIE91572.1| hypothetical protein RO3G_16283 [Rhizopus delemar RA 99-880]
Length = 343
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L + N P+++ G PG GKTT+ + +AH++ G
Sbjct: 25 PWVEKYRPLYLKDIVGNEEAVSRLMTIAKDGNMPNLILTGMPGIGKTTSIVCLAHEMLGA 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+V+R++IKTFA Q++ P +KIIILDEADSMT
Sbjct: 85 S-YKDAVLELNASDDRGIDVIRSRIKTFA-------QKKVTLPPGMHKIIILDEADSMTG 136
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 137 GAQQALRRTMEIYSNTTRFALACN 160
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 105/165 (63%), Gaps = 9/165 (5%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
V S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A
Sbjct: 13 VKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACA 72
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILD 162
+ LFG + ++ VLE+NASDDRGI+VVR +++ FA+ + +K++ILD
Sbjct: 73 YYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAASTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
EAD M+ DAQ ALRR +E Y+K RF +CN+I SRCT
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCT 177
>gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03]
Length = 391
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 121/199 (60%), Gaps = 23/199 (11%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ +++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 EDNLPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA-------VAVGSGQRRGGYPCPPYKI 158
++G + + VLELNASDDRGI+VVR +IKTFA+ V + G +K+
Sbjct: 102 IYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGA----FKL 157
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLF 209
IILDEAD+MT AQ ALRR ME Y+ RF I NY +SRCT F FS L
Sbjct: 158 IILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFR--FSPLKE 215
Query: 210 FMFFSLLDQISFDKEYIRI 228
+L++Q+ +KE +RI
Sbjct: 216 KDIRALVNQV-IEKEQVRI 233
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 13/170 (7%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+PE+ + K+ + PWVEKYRP+ + D+ ++++ + + PH+L
Sbjct: 4 SAPEQQQSAATAKIRNL-----PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLL 58
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ + +
Sbjct: 59 YGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFK 116
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+G +K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 117 KG------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 104/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV Q EVV + ++ PH+LFYGPPGTGKT+T +A+A ++G
Sbjct: 10 PWVEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIYGK 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 70 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 121 AAQNALRRIIEKYTKNTRFCILANYSHKITPALLSRCT 158
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 103/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 32 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + R + YK+IILDEAD MT
Sbjct: 92 D-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-LKGYKLIILDEADMMTT 142
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 143 AAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 180
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 107/163 (65%), Gaps = 19/163 (11%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV Q E+V VL ++ PH+LFYGPPGTGKT+T +A+A +
Sbjct: 3 RESLPWVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEA 164
++G Y VLELNASDDRGI+VVR +IK FA+ + S RG +K++ILDEA
Sbjct: 63 IYGKN-YSHMVLELNASDDRGIDVVRNQIKEFASTRQIFS---RG------FKLVILDEA 112
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
D+MT AQNALRR +E Y+K TRF + NY SRCT
Sbjct: 113 DAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALQSRCT 155
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 117/189 (61%), Gaps = 8/189 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 41 PWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y + +LELNASDDRGI+VVR +I+ FA+ S + K+++LDEAD+MT+
Sbjct: 101 Q-YHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKAS-----VKLVLLDEADAMTK 154
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
DAQ ALRR +E Y+K TRF ICN++++ AL S F F+ LD + + +I
Sbjct: 155 DAQFALRRVIEKYTKNTRFALICNHVNKI-IPALQSRCTRFR-FAPLDPMHVGERLKHVI 212
Query: 230 YASTLKFLE 238
A L E
Sbjct: 213 EAEGLDVPE 221
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 102/162 (62%), Gaps = 15/162 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
QS WVEKYRP+++ ++ +E+ L + PH+LFYGPPGTGKTT LA A +
Sbjct: 14 QSETIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAILACARE 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+FG + +K+ VLELNASDDRGI+VVR +IKTFA+ + G K++ILDEAD
Sbjct: 74 MFGAQ-FKTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAG------IKLVILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+MT AQ ALRR ME Y+ RF ICNY SRCT
Sbjct: 127 AMTSAAQAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRCT 168
>gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
Length = 417
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 108/179 (60%), Gaps = 29/179 (16%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA----------------AVAVGSGQ-----RR 148
+ + VLELNASDDRGI+VVR +IKTFA A+ VG+ Q
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIIVGTKQIFSTAPS 165
Query: 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
G +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 166 SGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 224
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 100/158 (63%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV ++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 36 PWVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGT 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ ++LELNASDDRGI VVR +IK FA + YK+IILDEAD MT
Sbjct: 96 E-YRKQILELNASDDRGIEVVREQIKNFAETRTLFSK--------GYKLIILDEADMMTT 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ+ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 147 AAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 184
>gi|405964852|gb|EKC30294.1| Replication factor C subunit 2 [Crassostrea gigas]
Length = 344
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 96/145 (66%), Gaps = 8/145 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP ++ D+ EE + L N P+++ GPPGTGKTT+ L +A + G
Sbjct: 25 QPWVEKYRPVKLHDIVGNEETISRLEVFGRDGNVPNVIIAGPPGTGKTTSILCLARAMLG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P Y+ VLE+NAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 85 PS-YRDAVLEMNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMT 136
Query: 169 EDAQNALRRTMETYSKVTRFFFICN 193
+ AQ ALRRTME YSK TRF CN
Sbjct: 137 DGAQQALRRTMEIYSKTTRFALACN 161
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 98/150 (65%), Gaps = 5/150 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + ++ PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI+VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAE----SKNHYNTCEKTALKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQNA+RR ME Y+K RF +CNY+++ T
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPTVLDDVVGNSDTIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASDDRGI+VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 80 DAYKEGVLELNASDDRGIDVVRNKIKTFA-------QKKVTLPPGRHKIIILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ ALRRTME +S TRF CN +S + S + L DQ
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACN-MSNKIIEPIQSRCAILRYAKLRDQ 180
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 108/156 (69%), Gaps = 9/156 (5%)
Query: 43 PVLQSSQ-PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
PV +S PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA
Sbjct: 16 PVTKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 75
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI++VR I +FA+ + ++G +K++IL
Sbjct: 76 CAKQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVIL 127
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 128 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 163
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 102/150 (68%), Gaps = 9/150 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + N ++ PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 37 PWVEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYGD 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ ++ ++LELNASDDRGI+VVR +IK FA + YK+IILDEAD MT+
Sbjct: 97 D-FRKQILELNASDDRGIDVVREQIKQFAETRTLFSK--------GYKLIILDEADMMTQ 147
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQ ALRR +E Y+K RF ICNY+++ T
Sbjct: 148 AAQAALRRVIEQYTKNVRFCIICNYVNKIT 177
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 19 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + +RG +K++ILDEAD+MT+
Sbjct: 79 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKRG------FKLVILDEADAMTQ 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 131 DAQNALRRVIEKFTENTRFCLICNYLSK 158
>gi|146423599|ref|XP_001487726.1| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 93/148 (62%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 11 PWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGK 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 TMYDQATLELNASDDRGIDVVRNKIKQFA-------QTKILLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 124 GAQQALRRTMEIYSNTTRFAFACNQSSK 151
>gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
Length = 326
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ DV ++ + L N P+++F GPPG GKTT +A+AH++ G
Sbjct: 10 PWVEKYRPQKLADVVGNQDAIGRLQVIARDGNMPNLIFSGPPGIGKTTCIMAMAHEMLGA 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 70 -LAKEAVLELNASDDRGIDVVRNKIKMFA-------QKKLTLPRGRHKVVILDEADSMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF CN S+
Sbjct: 122 GAQQALRRTMEIYSSSTRFGLACNLSSQ 149
>gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 121/199 (60%), Gaps = 23/199 (11%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ +++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 EDNLPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA-------VAVGSGQRRGGYPCPPYKI 158
++G + + VLELNASDDRGI+VVR +IKTFA+ V + G +K+
Sbjct: 102 IYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGA----FKL 157
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLLF 209
IILDEAD+MT AQ ALRR ME Y+ RF I NY +SRCT F FS L
Sbjct: 158 IILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFR--FSPLKE 215
Query: 210 FMFFSLLDQISFDKEYIRI 228
+L++Q+ +KE +RI
Sbjct: 216 KDIRALVNQV-IEKEQVRI 233
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 103/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIYGN 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + R + YK+IILDEAD MT
Sbjct: 100 D-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-LKGYKLIILDEADMMTT 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 151 AAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 188
>gi|401840377|gb|EJT43220.1| RFC4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 323
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 95/153 (62%), Gaps = 8/153 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ +L PWVEKYRPK + D+ +E + L + N PHM+ G P GKTT+
Sbjct: 1 MSKILTLQLPWVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPSIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KIII
Sbjct: 61 CLAHELLGNS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPQGRHKIII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
LDEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACN 145
>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMT AQ ALRRTME YS TRF F CN S L S + L D+
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ-SNKIIEPLQSRCAILRYSKLSDEDV 171
Query: 221 FDKEYIRIIYASTLKF 236
K ++II +K+
Sbjct: 172 L-KRLLQIIKLEDVKY 186
>gi|6324478|ref|NP_014547.1| replication factor C subunit 4 [Saccharomyces cerevisiae S288c]
gi|730503|sp|P40339.1|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4; AltName: Full=Activator 1 37 kDa subunit
gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
gi|285814797|tpg|DAA10690.1| TPA: replication factor C subunit 4 [Saccharomyces cerevisiae
S288c]
gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581076|dbj|GAA26234.1| K7_Rfc4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763163|gb|EHN04693.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296734|gb|EIW07836.1| Rfc4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 323
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMT AQ ALRRTME YS TRF F CN S L S + L D+
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ-SNKIIEPLQSRCAILRYSKLSDEDV 171
Query: 221 FDKEYIRIIYASTLKF 236
K ++II +K+
Sbjct: 172 L-KRLLQIIKLEDVKY 186
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 101/158 (63%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 38 PWVEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGA 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK + LELNASDDRGI+VVR +IK FA + R + YK+IILDEAD MT
Sbjct: 98 G-YKKQTLELNASDDRGIDVVREQIKQFA-------ETRTLF-SKGYKLIILDEADMMTT 148
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 149 AAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCT 186
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 100/151 (66%), Gaps = 5/151 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + ++ +E++ L + PH+LFYGPPGTGKT+T LA A L+
Sbjct: 14 NMPWVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADS 166
P+ S VLELNASDDRGI +VR +I FA + + + + P K++ILDEAD+
Sbjct: 74 TPKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP----KLVILDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT+DAQ+ALRR +E ++ RF ICNY+S+
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSK 160
>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
Length = 323
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMT AQ ALRRTME YS TRF F CN S L S + L D+
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ-SNKIIEPLQSRCAILRYSKLSDEDV 171
Query: 221 FDKEYIRIIYASTLKF 236
K ++II +K+
Sbjct: 172 L-KRLLQIIKLEDVKY 186
>gi|339264352|ref|XP_003366698.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
gi|316956812|gb|EFV46929.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
Length = 235
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 95/138 (68%), Gaps = 2/138 (1%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LFYGPPGTGKT+ LA+ Q+FG E+Y+ RVLELNASD+RGI+V+R K+K F+ A S
Sbjct: 5 LFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFA-ASE 63
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFS 205
GG CPP K++ILDEADSMT+ AQ ALRRTME SK TRF ICNYIS C + S
Sbjct: 64 ITEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYIS-CIIEPITS 122
Query: 206 FLLFFMFFSLLDQISFDK 223
F F L +I ++
Sbjct: 123 RCAKFRFKPLTLEIQIER 140
>gi|330796823|ref|XP_003286464.1| replication factor C subunit [Dictyostelium purpureum]
gi|325083587|gb|EGC37036.1| replication factor C subunit [Dictyostelium purpureum]
Length = 498
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 94/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++KD+ EE V L + + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 11 PWVEKYRPIEIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTTSILCLARALLGP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK V ELNASDDR ++VVR KIK+FA Q++ P +KIIILDE DSMT
Sbjct: 71 N-YKEAVYELNASDDRTLDVVRDKIKSFA-------QKKVTLPPGRHKIIILDEVDSMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRR ME YS TRF F CN
Sbjct: 123 GAQQALRRIMELYSSTTRFAFACN 146
>gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 95/153 (62%), Gaps = 8/153 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
LDEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACN 145
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 101/158 (63%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 41 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + YK+IILDEAD MT
Sbjct: 101 D-YRKQILELNASDDRGIDVVREQIKNFAETRTLFSK--------GYKLIILDEADMMTT 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 152 AAQAALRRVIEQYTKNVRFCIICNYVNKIIPAVQSRCT 189
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 99/147 (67%), Gaps = 10/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QE++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGFDYRIIFLDEADSLTSD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S TRF CNY S+
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSK 153
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 117/189 (61%), Gaps = 11/189 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP + DV Q +VV + ++ PH+LFYGPPGTGKT+T A+A +++G
Sbjct: 12 PWIEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLLFYGPPGTGKTSTICALAKEIYGK 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 72 N-YRNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEADAMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L + + ++ + I+
Sbjct: 123 AAQNALRRIIEKYTKNTRFCILANYAHKLT-PALLSRCTRFRFQPLA-EAAIERRVLSIM 180
Query: 230 YASTLKFLE 238
L+ E
Sbjct: 181 AHEHLQLTE 189
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 92/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L + N PH++ G PG GKTT+ L +AH L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 82 A-YKEGVLELNASDERGIDVVRNRIKAFA-------QKKVILPPGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACN 157
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+ + L N PHM+ G PG GKTT+ L +AHQL G
Sbjct: 24 PWVEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMIISGMPGIGKTTSVLCLAHQLLGS 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 84 A-YREGVLELNASDERGIDVVRNKIKGFA-------QKKVNLPPGRHKIVILDEADSMTA 135
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 136 GAQQALRRTMEIYSNTTRFALACN 159
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 106/173 (61%), Gaps = 11/173 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 69 WIEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 128
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 129 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 178
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
AQ+ALRRTME +S TRF CNY S+ + S F F L D D+
Sbjct: 179 AQSALRRTMEQFSDNTRFILSCNYSSK-IIDPIQSRCAVFRFSPLGDDAIADQ 230
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 101/158 (63%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV ++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 35 PWVEKYRPVTLDDVVSHHDITSTIVKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGN 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + +K+IILDEAD MT
Sbjct: 95 D-YRKQILELNASDDRGIDVVREQIKNFAETRTLFAK--------GFKLIILDEADMMTT 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ+ALRR +E Y+K RF ICNY+ SRCT
Sbjct: 146 AAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCT 183
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 10/164 (6%)
Query: 36 EVKRKMAPVLQS--SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
E+K++ P + PWVEKYRP+ + D+ ++++ + + PH+L YGPPGT
Sbjct: 5 ELKQQQQPAAAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGT 64
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
GKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ + ++G
Sbjct: 65 GKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG---- 118
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 119 --FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 95/149 (63%), Gaps = 7/149 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVE+YRP + D+ EE V L E N P+++ GPPGTGKTT+ + +A L G
Sbjct: 17 RPWVERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSGPPGTGKTTSIMCLARSLLG 76
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E+YK VLELNASD+R ++VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 77 KEVYKEAVLELNASDERTLDVVRNKIKQFA-------QKKVNLPPNRHKIVILDEADSMT 129
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
AQ A+RR ME YS TRF CN S+
Sbjct: 130 SAAQQAMRRIMEIYSSTTRFALACNDSSK 158
>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
Length = 398
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 130/217 (59%), Gaps = 17/217 (7%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR A PV Q + PWVEKYRP + DV+ ++++ + +E P
Sbjct: 19 QFSSDNAGKKAKRPAADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILATINRFIEANRLP 78
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--- 140
H+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 79 HLLLYGPPGTGKTSTILALARKIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 138
Query: 141 -AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY----- 194
++G G +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 139 FSMGPQSGSGSSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLS 198
Query: 195 ---ISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRI 228
+SRCT FS L SL+D + +KE I I
Sbjct: 199 PALLSRCT-RFRFSPLKEPDIRSLVDLV-VEKEQINI 233
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 22 PWVEKYRPKVLDDVVGNIETIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI VVR KIKTFA Q++ P +KI+ILDEADSMT
Sbjct: 81 NAYKEGVLELNASDERGIEVVRNKIKTFA-------QKKVTLPPGRHKIVILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME Y+ TRF CN
Sbjct: 134 GAQQALRRTMEIYANTTRFCLACN 157
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 10/164 (6%)
Query: 36 EVKRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
E+K++ P + PWVEKYRP+ + D+ ++++ + + PH+L YGPPGT
Sbjct: 5 ELKQQQQPAAAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGT 64
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
GKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ + ++G
Sbjct: 65 GKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG---- 118
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 119 --FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|402080324|gb|EJT75469.1| replication factor C subunit 3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 410
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 123/216 (56%), Gaps = 35/216 (16%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQR---------------- 147
++G + + VLELNASDDRGI+VVR +IKTFA+ G R
Sbjct: 99 IYGADNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPRNTAAAAAAAPSSSSSS 158
Query: 148 -----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY-------- 194
R G YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 159 APSAARTGSTMALYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPAL 218
Query: 195 ISRCT-FSALFSFLLFFMFFSLLDQISFDKEYIRII 229
+SRCT F FS L L+D++ D+E + ++
Sbjct: 219 LSRCTRFR--FSPLKEADIRVLVDRV-VDEESVNVV 251
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSK 161
>gi|342888810|gb|EGU88029.1| hypothetical protein FOXB_01512 [Fusarium oxysporum Fo5176]
Length = 1431
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 118/189 (62%), Gaps = 14/189 (7%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP + DV+ ++++ + ++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 623 VEKYRPNTLDDVSGHQDILATINKFIDQNRLPHLLLYGPPGTGKTSTILALARRIYGAAN 682
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ VLELNASDDRGI+VVR +IKTFA+ ++G R G +K+I+LDEAD+M
Sbjct: 683 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGGASARSGNSMAGFKLIVLDEADAM 742
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNY--------ISRCTFSALFSFLLFFMFFSLLDQI 219
T AQ ALRR ME Y+ TRF I NY +SRCT FS L L+D++
Sbjct: 743 TSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCT-RFRFSPLKEGDIRVLVDKV 801
Query: 220 SFDKEYIRI 228
++E++RI
Sbjct: 802 -VEEEHVRI 809
>gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3]
gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188]
Length = 404
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 121/200 (60%), Gaps = 25/200 (12%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP ++DV+ ++++ + ++T PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 EDNLPWVEKYRPNTLEDVSGHQDIIGTINRFIDTNRLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFA--------AVAVGSGQRRGGYPCPPYK 157
++G + + VLELNASDDRGI+VVR +IKTFA A A + G +K
Sbjct: 102 IYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPAAKAESTLGA-----FK 156
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT-FSALFSFLL 208
+IILDEAD+MT AQ ALRR ME Y+ RF I NY +SRCT F FS L
Sbjct: 157 LIILDEADAMTAVAQMALRRIMEKYTANARFCIIANYSHKLSPALLSRCTRFR--FSPLK 214
Query: 209 FFMFFSLLDQISFDKEYIRI 228
L+DQ+ + E +RI
Sbjct: 215 EKDIRVLVDQV-IETEQVRI 233
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 108/183 (59%), Gaps = 11/183 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ Q E+V L + + + PH+LF GP G GK
Sbjct: 3 EGDEQTAATATGREIWIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+ + S F F L
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPL 171
Query: 216 LDQ 218
D+
Sbjct: 172 SDE 174
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 98/150 (65%), Gaps = 5/150 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + ++ PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGINV+R +IKTFA S K+IILDEAD MT
Sbjct: 74 K-RSSFVLELNASDDRGINVIRDQIKTFAE----SKNHYTTCEKTTLKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCT 199
AQNA+RR ME Y+K RF +CNY+++ T
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSK 161
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 92/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AHQL GP
Sbjct: 20 PWVEKYRPQVLDDVVGNADTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 80 A-YKEGVLELNASDERGIDVVRNKIKNFA-------QKKVTLPPGRHKIIILDEADSMTA 131
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME +S TRF CN
Sbjct: 132 GAQQALRRTMEIFSNTTRFCLACN 155
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 107/174 (61%), Gaps = 6/174 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + +E PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGITVVREQIKTFAE----SKNHYNICERTSLKLIILDEADHMTF 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDK 223
AQNA+RR ME Y+K RF ICNY+++ T A+ S F F L ++ +K
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLICNYVNKIT-PAIQSRCTSFRFSPLKEEYMLNK 181
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 10/164 (6%)
Query: 36 EVKRKMAPVLQS--SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
E+K++ P + PWVEKYRP+ + D+ ++++ + + PH+L YGPPGT
Sbjct: 5 ELKQQQQPATAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGT 64
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
GKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ + ++G
Sbjct: 65 GKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG---- 118
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 119 --FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796]
Length = 264
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMT AQ ALRRTME YS TRF F CN S L S + L D+
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ-SNKIIEPLQSRCAILRYSKLSDEDV 171
Query: 221 FDKEYIRIIYASTLKF 236
K ++II +K+
Sbjct: 172 L-KRLLQIIKLEDVKY 186
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 102/161 (63%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q+EVV L +E N PHMLF GPPGTGKTT A +AH L+G +
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+R I V+R K+K FA V P+KI++LDEAD+MT D
Sbjct: 69 -YRKYMLELNASDERKIEVIRGKVKEFARTRVVGD--------VPFKIVLLDEADNMTAD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRR ME YS TRF NY S+ + +A+F F
Sbjct: 120 AQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRF 160
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 11/168 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++D+ QEE + L + + PH+LF GP G GKT++A AIA +++G +
Sbjct: 16 WIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGDD 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK+FA R + Y+II LDEADS+T D
Sbjct: 76 -WRGNFLELNASDERGIDVVRDRIKSFA---------RSAFGGHDYRIIFLDEADSLTSD 125
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ+ALRRTME +S TRF CNY S+ + S F F L D+
Sbjct: 126 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLSDE 172
>gi|410730707|ref|XP_003980174.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
gi|401780351|emb|CCK73498.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
Length = 321
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE + L + N PHM+ G PG GKTT+ +AH+L G
Sbjct: 11 PWVEKYRPHVLKDIVGNEETILRLEQIAQDGNMPHMIISGLPGIGKTTSIHCLAHELLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 DAYSRAVLELNASDDRGIDVVRNQIKHFA-------QKKCYLPPGKHKIIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME +S TRF F CN
Sbjct: 123 GAQQALRRTMELFSNSTRFAFACN 146
>gi|409081372|gb|EKM81731.1| hypothetical protein AGABI1DRAFT_35783 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 344
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 103/152 (67%), Gaps = 9/152 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++
Sbjct: 25 SLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPGTGKTSTILAVARRIY 84
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G YK ++LELNASDDRGI+VVR +IK FA + R + +K+IILDEAD M
Sbjct: 85 GTS-YKKQILELNASDDRGIDVVREQIKQFA-------ETRTLF-SKGFKLIILDEADMM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T+ AQ ALRR +E ++K RF ICNY+++ T
Sbjct: 136 TQAAQAALRRVIEQFTKNVRFCIICNYVNKIT 167
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 107/187 (57%), Gaps = 10/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AH L G
Sbjct: 23 PWVEKYRPRVLDDVVGNTDTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKTFA-------QKKVTLPPGRHKIIILDEADSMTA 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF CN ++ + S + L DQ K + I
Sbjct: 135 GAQQALRRTMEIYSNTTRFALACNQSNK-IIEPIQSRCAILRYSKLRDQEVL-KRLLEIC 192
Query: 230 YASTLKF 236
A +K+
Sbjct: 193 EAEKVKY 199
>gi|444317044|ref|XP_004179179.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
gi|387512219|emb|CCH59660.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 104/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V Q EVV + + PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 12 PWVEKYRPNKLDEVYGQNEVVSTVRRFVSEGKLPHLLFYGPPGTGKTSTIVALAREIYGN 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 72 N-YSNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 123 AAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCT 160
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|302653321|ref|XP_003018488.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
gi|291182138|gb|EFE37843.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
Length = 416
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 108/178 (60%), Gaps = 28/178 (15%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA---------------VGSGQ-----RRG 149
+ + VLELNASDDRGI+VVR +IKTFA+ + VG+ Q
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIVGTKQIFSTAPSS 165
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
G +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 166 GSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 223
>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 377
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 108/156 (69%), Gaps = 13/156 (8%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP+ +++V Q ++V + +ET PH+LFYGPPGTGKT+T +A+A +++GP
Sbjct: 55 VEKYRPENLEEVYGQGDIVNTVRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPN- 113
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
YK+ VLELNASDDRGI+VVR +IK+FA+ + Q P +K+IILDEAD+MT A
Sbjct: 114 YKNMVLELNASDDRGIDVVRNQIKSFAS----TRQIFTSASSPQFKLIILDEADAMTSVA 169
Query: 172 QNALRRTMETYSKVTRFFFICNY--------ISRCT 199
QN+LRR +E ++K RF + NY ISRCT
Sbjct: 170 QNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCT 205
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 105/167 (62%), Gaps = 10/167 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + ++ E +++ + ++ PH+L YGPPGTGKT+T LA A +L+ P
Sbjct: 12 PWVEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTP 71
Query: 110 ELYKSR-VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ S VLELNASDDRGI +VR +I +FA+ G +K+IILDEAD+MT
Sbjct: 72 AQFNSMVVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEADAMT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
DAQNALRR +E Y+ RF ICNY+S+ AL S F F L
Sbjct: 124 IDAQNALRRIIEKYTDNVRFCIICNYLSK-IIPALQSRCTRFRFLPL 169
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 107/174 (61%), Gaps = 16/174 (9%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPC 153
A+ L+G + ++ VLE+NASDDRGI+VVR + + FA+ + S G P
Sbjct: 70 CAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPA 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+K++ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I SRCT
Sbjct: 130 AKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCT 183
>gi|147904320|ref|NP_001084837.1| replication factor C (activator 1) 2, 40kDa [Xenopus laevis]
gi|47124709|gb|AAH70622.1| MGC81391 protein [Xenopus laevis]
Length = 348
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 TM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|326427125|gb|EGD72695.1| replication factor C subunit 2 [Salpingoeca sp. ATCC 50818]
Length = 324
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 91/146 (62%), Gaps = 11/146 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KD+ EE V L E N P+++ GPPGTGKTT+ L +A L G
Sbjct: 4 PWVEKYRPKVLKDIVGNEETVDRLKVIAEAGNMPNLIIAGPPGTGKTTSILCLARALLGE 63
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSM 167
++YK V+E NASDDRGI VVR IK F+ R PP +KI+ILDE DSM
Sbjct: 64 DVYKEAVMETNASDDRGIEVVRNNIKMFS---------RKKVTLPPGRHKIVILDEVDSM 114
Query: 168 TEDAQNALRRTMETYSKVTRFFFICN 193
T AQ ALRRTME Y+ TRF CN
Sbjct: 115 TSAAQQALRRTMEMYANTTRFALACN 140
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVRTKIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGIEVVRTKIKQFA-------QKKVTLPPGRHKIVILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ ALRRTME +S TRF CN +S + S + L DQ
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACN-MSNKIIEPIQSRCAILRYAKLRDQ 180
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFR-FQPLPQEAIERRIANVL 182
Query: 230 YASTLKF 236
LK
Sbjct: 183 VHEKLKL 189
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVRTKIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGIEVVRTKIKQFA-------QKKVTLPPGRHKIVILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ ALRRTME +S TRF CN +S + S + L DQ
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACN-MSNKIIEPIQSRCAILRYAKLRDQ 180
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 8/158 (5%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
+ V ++ PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T
Sbjct: 13 RTVAVKSANLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 72
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LA A QL+ + + S VLELNASDDRGI +VR I +FA+ + ++G +K++
Sbjct: 73 LACAKQLYKDKEFNSMVLELNASDDRGIGIVRGPILSFASTR--TIFKKG------FKLV 124
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
ILDEAD+MT++AQNALRR +E +++ TRF ICNY+S+
Sbjct: 125 ILDEADAMTQEAQNALRRVIEKFTENTRFCLICNYLSK 162
>gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 321
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 90/144 (62%), Gaps = 7/144 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 9 PWVEKYRPRVLDDIVGNEETVERLKIIAKDGNIPHMIISGLPGIGKTTSVHCLAYELLGK 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 69 EYYHQATMELNASDDRGIDVVRNKIKQFA-------QTKILIPPGRTKIIILDEADSMTP 121
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 122 GAQQALRRTMEIYSNTTRFVFACN 145
>gi|426196606|gb|EKV46534.1| hypothetical protein AGABI2DRAFT_71819 [Agaricus bisporus var.
bisporus H97]
Length = 344
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 103/152 (67%), Gaps = 9/152 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++
Sbjct: 25 SLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPGTGKTSTILAVARRIY 84
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G YK ++LELNASDDRGI+VVR +IK FA + R + +K+IILDEAD M
Sbjct: 85 GNS-YKKQILELNASDDRGIDVVREQIKQFA-------ETRTLF-SKGFKLIILDEADMM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T+ AQ ALRR +E ++K RF ICNY+++ T
Sbjct: 136 TQAAQAALRRVIEQFTKNVRFCIICNYVNKIT 167
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 122/223 (54%), Gaps = 33/223 (14%)
Query: 35 DEVKRKMAPVLQ---SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
D+ K K PV S PWVEKYRP + DV +++V + + PH+LFYGPP
Sbjct: 61 DKGKAKQEPVEAHELDSLPWVEKYRPATLDDVVSHKDIVSTIDKFISLNRLPHLLFYGPP 120
Query: 92 GTGKTTTALAIAHQLFG----------------PELYKSRVLELNASDDRGINVVRTKIK 135
GTGKT+T LA+A +++G ++ VLELNASDDRGI+VVR +IK
Sbjct: 121 GTGKTSTILAVARKIYGGTGNSIRGGVSGKGKEGSSMRNNVLELNASDDRGIDVVRDQIK 180
Query: 136 TFAAVAV--GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
FA+ + SG YK+IILDEAD MT AQNALRR +E Y+K RF ICN
Sbjct: 181 NFASTRMIFSSG----------YKLIILDEADMMTTTAQNALRRVIEQYTKNVRFCIICN 230
Query: 194 YISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKF 236
Y++R A+ S F F L+ D+ ++ A ++
Sbjct: 231 YVNRI-IPAVQSRCTRFR-FGPLETTEVDRRIQHVVDAESVNL 271
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 9/153 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ S W EKYRPK + +V QE++VR L + ++T N PH+LF GPPG GKT A+A+A
Sbjct: 11 MASDDVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAK 70
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+FG + +++ ELNASD+RGI+VVR IK FA A R +KII LDEA
Sbjct: 71 DMFG-DTWQNNFTELNASDERGIDVVRNNIKNFARTAPLGDAR--------FKIIFLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
D++T DAQ+ALRRTME Y+ RF CNY S+
Sbjct: 122 DALTSDAQSALRRTMERYTATCRFIISCNYSSK 154
>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
gi|365763611|gb|EHN05138.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFR-FQPLPQEAIERRIANVL 182
Query: 230 YASTLKF 236
LK
Sbjct: 183 VHEKLKL 189
>gi|398392868|ref|XP_003849893.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
gi|339469771|gb|EGP84869.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
Length = 460
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 107/166 (64%), Gaps = 12/166 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 44 EDTLPWVEKYRPSSLDDVHGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARR 103
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPC-PPYKIIIL 161
++G + + VLELNASDDRGI+VVR +IKTF++ + GS + YK+IIL
Sbjct: 104 IYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSAQQSTIANYKLIIL 163
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 164 DEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCT 209
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
Length = 357
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 112/198 (56%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 36 PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 95 DAYKEAVLELNASDERGIDVVRQRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 147
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D+ K ++II
Sbjct: 148 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYAKLTDE-QVVKRLLQII 205
Query: 230 YASTLKFLEGFGLSLTYS 247
A +KF E +L +S
Sbjct: 206 DAEGVKFSEDGLAALVFS 223
>gi|213983145|ref|NP_001135488.1| replication factor C (activator 1) 2, 40kDa [Xenopus (Silurana)
tropicalis]
gi|195539917|gb|AAI67884.1| Unknown (protein for MGC:135299) [Xenopus (Silurana) tropicalis]
Length = 345
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 TM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>gi|6324039|ref|NP_014109.1| replication factor C subunit 3 [Saccharomyces cerevisiae S288c]
gi|585844|sp|P38629.1|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 40 kDa subunit
gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
gi|285814375|tpg|DAA10269.1| TPA: replication factor C subunit 3 [Saccharomyces cerevisiae
S288c]
gi|392297062|gb|EIW08163.1| Rfc3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 340
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFR-FQPLPQEAIERRIANVL 182
Query: 230 YASTLKF 236
LK
Sbjct: 183 VHEKLKL 189
>gi|349580660|dbj|GAA25819.1| K7_Rfc3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 340
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFR-FQPLPQEAIERRIANVL 182
Query: 230 YASTLKF 236
LK
Sbjct: 183 VHEKLKL 189
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSK 161
>gi|440632243|gb|ELR02162.1| replication factor C subunit 2/4 [Geomyces destructans 20631-21]
Length = 357
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 120/223 (53%), Gaps = 10/223 (4%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +SS ++ +K A V PWVEKYRP + DV E + L N PH
Sbjct: 9 TGESSTATTKKVLKANGAGVTNYELPWVEKYRPVFLDDVVGNVETIERLKIIAREGNMPH 68
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
M+ G PG GKTT+ L +A QL G E YK VLELNASD+RGI+VVR +IK FA
Sbjct: 69 MIISGMPGIGKTTSVLCLARQLLG-ESYKEAVLELNASDERGIDVVRNRIKGFA------ 121
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALF 204
Q++ P K++ILDEADSMT AQ ALRRTME YS TRF F CN S L
Sbjct: 122 -QKKVTLPQGRQKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQ-SNKIIEPLQ 179
Query: 205 SFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247
S + L D K ++II A +++ + +L +S
Sbjct: 180 SRCAILRYARLTDA-QVVKRLLQIIEAENVEYSDDGLAALVFS 221
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 102/166 (61%), Gaps = 24/166 (14%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ Q+ V + L N PH+LF+GPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--PPYKIIILDEADSMT 168
++ VLELNASD+RGI ++R K+K FA P P+++IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGIAMIREKVKEFAKT----------IPTVKAPFRLIILDEADNMT 116
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYI--------SRCTFSALFSF 206
DAQ ALRR ME Y+ RF + NY SRC+ LF F
Sbjct: 117 PDAQQALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCS---LFRF 159
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFR-FQPLPQEAIERRIANVL 182
Query: 230 YASTLKF 236
LK
Sbjct: 183 VREKLKL 189
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L +E + PH++F GP G GKT +A AIA +L+G E
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG-E 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T D
Sbjct: 77 DWREHFLELNASDERGIDVVRDRIKNFA---------RSSFGGVEYRIIFLDEADALTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D+ I
Sbjct: 128 AQSALRRTMEQFSHNTRFILSCNYSSQI-IDPIQSRCAVFRFTELSDE---------AIE 177
Query: 231 ASTLKFLEGFGLSLT 245
A T + E G+SLT
Sbjct: 178 AQTREIAETEGISLT 192
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFR-FQPLPQEAIERRIANVL 182
Query: 230 YASTLKF 236
LK
Sbjct: 183 VREKLKL 189
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 100/157 (63%), Gaps = 17/157 (10%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRPK DV Q++++ + + + + PHMLFYGPPGTGKT+T LA A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+KS VLELNASDDRGI+VVR +IK F S QR K++ILDEAD+MT
Sbjct: 70 -FKSMVLELNASDDRGIDVVRNEIKDFC-----STQR---IFATGVKLVILDEADAMTSA 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ ALRR ME Y+ TRF ICNY SRCT
Sbjct: 121 AQMALRRIMEKYTSSTRFCLICNYANKIIPALQSRCT 157
>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSQCTRFR-FQPLPQEAIERRIANVL 182
Query: 230 YASTLKF 236
LK
Sbjct: 183 VHEKLKL 189
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L +E + PH++F GP G GKT +A AIA +L+G E
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG-E 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T D
Sbjct: 77 DWREHFLELNASDERGIDVVRDRIKNFA---------RSSFGGVKYRIIFLDEADALTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D+ I
Sbjct: 128 AQSALRRTMEQFSHNTRFILSCNYSSQI-IDPIQSRCAVFRFTELSDE---------AIE 177
Query: 231 ASTLKFLEGFGLSLT 245
A T + E G+SLT
Sbjct: 178 AQTREIAETEGISLT 192
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 35 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 95 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 147 DAQNALRRVIEKFTENTRFCLICNYLSK 174
>gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 336
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 104/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V Q E+V + +E PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 13 PWVEKYRPTSLDEVYGQNEIVNTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALAKEIYGK 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR ++K FA+ R + +K+IILDEAD+MT
Sbjct: 73 N-YHNMVLELNASDDRGIDVVRNQVKDFAST-------RQIFS-KGFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQN+LRR +E Y+K TRF + NY +SRCT
Sbjct: 124 AAQNSLRRIIEKYTKNTRFCILANYAYKLTPALLSRCT 161
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>gi|392597749|gb|EIW87071.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 334
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 14 PWVEKYRPTLLDDVVGNVETIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK+FA Q++ P +KI+ILDEADSMT
Sbjct: 73 DAYKEGVLELNASDERGIDVVRNKIKSFA-------QKKVTLPPGRHKIVILDEADSMTG 125
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 126 GAQQALRRTMEIYSNTTRFCLACN 149
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + ++ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 16 PWVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKD 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI++VR + +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 76 REFNSMVLELNASDDRGIDIVRGPVLSFASTR--TIFKKG------FKLVILDEADAMTQ 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 128 DAQNALRRVIEKFTENTRFCLICNYLSK 155
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1]
Length = 323
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+++D+ EE V L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGD 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 70 EHYHQATMELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRQKIIILDEADSMTP 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRT+E YS TRF F CN S+
Sbjct: 123 GAQQALRRTIEIYSNTTRFAFACNQSSK 150
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|150401734|ref|YP_001325500.1| replication factor C small subunit [Methanococcus aeolicus
Nankai-3]
gi|150014437|gb|ABR56888.1| Replication factor C [Methanococcus aeolicus Nankai-3]
Length = 940
Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 98/145 (67%), Gaps = 11/145 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRPK + ++ + ++ L N +E + PHMLF GPPG GKTT+AL +A L+G
Sbjct: 3 KPWVEKYRPKTLNEITGHDAIITRLKNYVEKESLPHMLFSGPPGLGKTTSALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ +K LELN+SD+RGI+VVRTK+K FA +G P+KII LDE+D++
Sbjct: 63 -DTWKDNFLELNSSDERGIDVVRTKVKNFARTKPIGDA---------PFKIIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFIC 192
T DAQNALRRTME YS + RF C
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSC 137
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 100/147 (68%), Gaps = 9/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP +++DV Q + + L + ++T N PH+LF GPPG GKT TA++IA +LFG +
Sbjct: 6 WIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGDD 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVRTKIK FA + G +KII LDEAD++T D
Sbjct: 66 -WRENFTELNASDERGIDVVRTKIKNFAKTSPIGG--------ADFKIIFLDEADALTPD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME Y+ RF CNY S+
Sbjct: 117 AQSALRRTMERYTNNCRFILSCNYSSK 143
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 36 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 96 AM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 147
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 148 GAQQALRRTMEIYSKTTRFALACN 171
>gi|358389695|gb|EHK27287.1| hypothetical protein TRIVIDRAFT_82171 [Trichoderma virens Gv29-8]
Length = 357
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 113/198 (57%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D+ K ++II
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYAKLTDE-QVVKRLMQII 203
Query: 230 YASTLKFLEGFGLSLTYS 247
A +++ + +L +S
Sbjct: 204 EAEKVEYSDDGLAALVFS 221
>gi|323307584|gb|EGA60853.1| Rfc3p [Saccharomyces cerevisiae FostersO]
Length = 201
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 115/189 (60%), Gaps = 15/189 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
Y + VLELNASDDRGI+VVR +IK FA+ G +K+IILDEAD+M
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----------FKLIILDEADAM 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIR 227
T AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++
Sbjct: 123 TNAAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFR-FQPLPQEAIERRIAN 180
Query: 228 IIYASTLKF 236
++ LK
Sbjct: 181 VLVHEKLKL 189
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 100/157 (63%), Gaps = 17/157 (10%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRPK DV Q++++ + + + + PHMLFYGPPGTGKT+T LA A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+KS VLELNASDDRGI+VVR +IK F S QR K++ILDEAD+MT
Sbjct: 70 -FKSMVLELNASDDRGIDVVRNEIKDFC-----STQR---IFATGVKLVILDEADAMTSA 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
AQ ALRR ME Y+ TRF ICNY SRCT
Sbjct: 121 AQMALRRIMEKYTTSTRFCLICNYANKIIPALQSRCT 157
>gi|91095205|ref|XP_967947.1| PREDICTED: similar to replication factor C subunit 2 [Tribolium
castaneum]
Length = 344
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 101/168 (60%), Gaps = 9/168 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ +++ E+ L+ + N P+++ GPPG GKTTT L +A L GP
Sbjct: 27 PWIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGP 86
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDE DSMTE
Sbjct: 87 A-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEVDSMTE 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLD 217
AQ ALRRTME YS TRF CNY S A+ S + L D
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNY-SEKVIEAIQSRCAILRYSRLTD 185
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>gi|73957665|ref|XP_546916.2| PREDICTED: replication factor C subunit 2 isoform 1 [Canis lupus
familiaris]
Length = 352
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 96/144 (66%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|440908469|gb|ELR58483.1| Replication factor C subunit 2 [Bos grunniens mutus]
Length = 354
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 94/152 (61%), Gaps = 8/152 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A L PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+
Sbjct: 16 ASTLPYELPWVEKYRPQVLDDVVGNTDTIERLKVIARDGNCPHIIISGMPGIGKTTSIHC 75
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+AHQL G + YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+IL
Sbjct: 76 LAHQLLG-DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPSGRHKIVIL 127
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
DEADSMT AQ ALRRTME Y+ TRF CN
Sbjct: 128 DEADSMTAGAQQALRRTMEIYANTTRFALACN 159
>gi|322698624|gb|EFY90393.1| activator 1 subunit 3 [Metarhizium acridum CQMa 102]
Length = 921
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 107/166 (64%), Gaps = 15/166 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PW+EKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWIEKYRPATLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ +G+ + +K+IIL
Sbjct: 100 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASAKSS---IAGFKLIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
DEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 157 DEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCT 202
>gi|124249278|ref|NP_001074372.1| replication factor C subunit 2 [Bos taurus]
gi|122131746|sp|Q05B83.1|RFC2_BOVIN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|115545402|gb|AAI22636.1| Replication factor C (activator 1) 2, 40kDa [Bos taurus]
gi|296472929|tpg|DAA15044.1| TPA: replication factor C subunit 2 [Bos taurus]
Length = 352
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 92/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 22 PWVEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSGLPGIGKTTSIHCLAHQLLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR K+K FA Q++ P +KI+ILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGIDVVRNKVKAFA-------QKKVTLPPGRHKIVILDEADSMTP 133
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME ++ TRF CN
Sbjct: 134 GAQQALRRTMEIFANTTRFALACN 157
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 118/175 (67%), Gaps = 11/175 (6%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
F+ S+P++ +++ + A + PWVEKYRP+ + D+ ++++ + +
Sbjct: 113 FAMEASAPKQQQEQ---QPAGTKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRL 169
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PH+LFYGPPGTGKT+T LA A +L+ + + S VLELNASDDRGI++VR I +FA+
Sbjct: 170 PHLLFYGPPGTGKTSTILACAKRLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR- 228
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ ++G +K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 229 -TIFKKG------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK 276
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>gi|332016496|gb|EGI57389.1| Replication factor C subunit 2 [Acromyrmex echinatior]
Length = 355
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 101/164 (61%), Gaps = 8/164 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S VK K ++ PW+EKYRP+ D+ E+ V L+ + N P+++ G
Sbjct: 21 PSTSNSNVKIKEKDGKSANLPWIEKYRPQVFSDIVGNEDTVSRLSVFAQHGNTPNIIIAG 80
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 81 PPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 132
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN
Sbjct: 133 NLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACN 176
>gi|358401379|gb|EHK50685.1| hypothetical protein TRIATDRAFT_157714 [Trichoderma atroviride IMI
206040]
Length = 357
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 113/198 (57%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D+ K ++II
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYAKLTDE-QVVKRLMQII 203
Query: 230 YASTLKFLEGFGLSLTYS 247
A +++ + +L +S
Sbjct: 204 EAEKVEYSDDGLAALVFS 221
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 106/174 (60%), Gaps = 16/174 (9%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPC 153
A+ L+G ++ VLE+NASDDRGI+VVR + + FA+ + S G P
Sbjct: 70 CAYYLYGKARVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGTGSSTGGGSGGPA 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+K++ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I SRCT
Sbjct: 130 AKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCT 183
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 102/158 (64%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V Q ++V + + PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 11 PWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIYGS 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ +K+IILDEAD+MT
Sbjct: 71 N-YRNMVLELNASDDRGIDVVRNQIKEFASTM--------QIFSKGFKLIILDEADAMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQN+LRR +E Y+K TRF + NY +SRCT
Sbjct: 122 TAQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCT 159
>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
Length = 357
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 112/198 (56%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 35 PWVEKYRPAFLDDIVGNTETIERLKIIAKDGNMPHIIISGMPGIGKTTSVLCLARQLLG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 94 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKIVILDEADSMTS 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D K ++II
Sbjct: 147 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYARLTDA-QVVKRLLQII 204
Query: 230 YASTLKFLEGFGLSLTYS 247
A +++ + +L +S
Sbjct: 205 EAEQVRYSDDGLAALVFS 222
>gi|384475811|ref|NP_001245051.1| replication factor C subunit 2 [Macaca mulatta]
gi|402863243|ref|XP_003895940.1| PREDICTED: replication factor C subunit 2 isoform 1 [Papio anubis]
gi|355560573|gb|EHH17259.1| hypothetical protein EGK_13612 [Macaca mulatta]
gi|355761341|gb|EHH61789.1| hypothetical protein EGM_19875 [Macaca fascicularis]
gi|383420507|gb|AFH33467.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|384948612|gb|AFI37911.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|387542032|gb|AFJ71643.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
Length = 352
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 110/182 (60%), Gaps = 13/182 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D E +R I
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDDAV--AEQVRDIA 183
Query: 231 AS 232
A+
Sbjct: 184 AA 185
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 24 PWVEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 83 DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPGRHKIVILDEADSMTP 135
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME Y+ TRF CN
Sbjct: 136 GAQQALRRTMEIYANTTRFALACN 159
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 110/182 (60%), Gaps = 13/182 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D E +R I
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDDAV--AEQVRDIA 183
Query: 231 AS 232
A+
Sbjct: 184 AA 185
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 95/149 (63%), Gaps = 8/149 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ SQPWVEKYRP+ + DV V+ L N P+++ GPPG GKTT+ LA+ H
Sbjct: 1 MSQSQPWVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCH 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
QL G + K V+ELNASDDRGI+VVR IK FA +R P +K+++LDE+
Sbjct: 61 QLLGDK-EKDAVIELNASDDRGIDVVRKNIKEFA-------KRHVALPEGRHKVVLLDES 112
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICN 193
DSMT+ AQ A+RR ME Y+K TRF F CN
Sbjct: 113 DSMTDAAQQAMRRIMENYTKTTRFVFACN 141
>gi|344289927|ref|XP_003416692.1| PREDICTED: replication factor C subunit 2-like [Loxodonta africana]
Length = 352
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPRGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 110/182 (60%), Gaps = 13/182 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D E +R I
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDDAV--AEQVRDIA 183
Query: 231 AS 232
A+
Sbjct: 184 AA 185
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 110/182 (60%), Gaps = 13/182 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D E +R I
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDDAV--AEQVRDIA 183
Query: 231 AS 232
A+
Sbjct: 184 AA 185
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 96/147 (65%), Gaps = 8/147 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PWVEKYRP+ +K+V E+ V L + N PH+L G PG GKTT LA+A +L
Sbjct: 10 ASLPWVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALAREL 69
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + +K VLELNASD+RGI+VVR KIK FA Q++ P +KIIILDEADS
Sbjct: 70 LG-DSFKEGVLELNASDERGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEADS 121
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICN 193
MT +Q A+RRTME YS TRF CN
Sbjct: 122 MTSASQQAMRRTMELYSNTTRFALACN 148
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 108/174 (62%), Gaps = 16/174 (9%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPC 153
A+ L+G + ++ VLE+NASDDRGI+VVR + + FA+ + S GG P
Sbjct: 70 CAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGSGGGGPA 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+K++ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I SRCT
Sbjct: 130 AKFKLVILDEADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCT 183
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 110/182 (60%), Gaps = 13/182 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D E +R I
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDDAV--AEQVRDIA 183
Query: 231 AS 232
A+
Sbjct: 184 AA 185
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 102/166 (61%), Gaps = 24/166 (14%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ Q+ V + L N PH+LF+GPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--PPYKIIILDEADSMT 168
++ VLELNASD+RGI ++R K+K FA P P+++IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGIAMIREKVKEFAKT----------MPTVKAPFRLIILDEADNMT 116
Query: 169 EDAQNALRRTMETYSKVTRFFFICNY--------ISRCTFSALFSF 206
DAQ ALRR ME Y+ RF + NY SRC+ LF F
Sbjct: 117 PDAQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCS---LFRF 159
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 98/147 (66%), Gaps = 10/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QE++V L + + + PH+LF GP G GKTT A AIA +++G +
Sbjct: 14 WIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 74 -WRGNFLELNASDERGIDVVRDRIKNFA---------RASFGGHDYRIIFLDEADSLTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S TRF CNY S+
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSK 150
>gi|270015972|gb|EFA12420.1| replication factor C 40kD subunit [Tribolium castaneum]
Length = 512
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 94/145 (64%), Gaps = 8/145 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ +++ E+ L+ + N P+++ GPPG GKTTT L +A L GP
Sbjct: 195 PWIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGP 254
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDE DSMTE
Sbjct: 255 A-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEVDSMTE 306
Query: 170 DAQNALRRTMETYSKVTRFFFICNY 194
AQ ALRRTME YS TRF CNY
Sbjct: 307 GAQQALRRTMEIYSNTTRFALACNY 331
>gi|55926133|ref|NP_446238.1| replication factor C subunit 2 [Rattus norvegicus]
gi|81884071|sp|Q641W4.1|RFC2_RAT RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit C2
gi|51980598|gb|AAH82110.1| Replication factor C (activator 1) 2 [Rattus norvegicus]
gi|149063102|gb|EDM13425.1| replication factor C (activator 1) 2, isoform CRA_b [Rattus
norvegicus]
Length = 349
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>gi|334349834|ref|XP_003342265.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit
2-like, partial [Monodelphis domestica]
Length = 414
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 97/152 (63%), Gaps = 8/152 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L
Sbjct: 69 APGTHYELPWVEKYRPMKLNEIVGNEDTVSRLEVFAREGNVPNIIISGPPGTGKTTSILC 128
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A L GP L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIIL
Sbjct: 129 LARALLGPSL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPRGRHKIIIL 180
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
DEADSMT+ AQ ALRRTME YSK TRF CN
Sbjct: 181 DEADSMTDGAQQALRRTMEIYSKTTRFALACN 212
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 110/182 (60%), Gaps = 13/182 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230
AQ+ALRRTME +S TRF CNY S+ + S F F L D E +R I
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKI-IDPIQSRCAVFRFSPLGDDAI--AEQVRDIA 183
Query: 231 AS 232
A+
Sbjct: 184 AA 185
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 19 PWVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 79 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 131 DAQNALRRVIEKFTENTRFCLICNYLSK 158
>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347837173|emb|CCD51745.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 355
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 119/221 (53%), Gaps = 10/221 (4%)
Query: 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHML 86
+SS ++ +K V PWVEKYRP + DV E + L + N PH++
Sbjct: 11 ESSTSAAKKALKANTNGVTNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVI 70
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
G PG GKTT+ L +A QL G YK VLELNASD+RGI+VVR +IK FA Q
Sbjct: 71 ISGMPGIGKTTSVLCLARQLLGDS-YKEAVLELNASDERGIDVVRNRIKGFA-------Q 122
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206
++ P +K++ILDEADSMT AQ ALRRTME YS TRF F CN S L S
Sbjct: 123 KKVTLPAGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQ-SNKIIEPLQSR 181
Query: 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247
+ L DQ K ++II +++ + +L +S
Sbjct: 182 CAILRYARLTDQ-QVVKRLLQIIETEKVEYSDDGLAALVFS 221
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 98/147 (66%), Gaps = 10/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S TRF CNY S+
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSK 153
>gi|326931171|ref|XP_003211707.1| PREDICTED: replication factor C subunit 2-like [Meleagris
gallopavo]
Length = 360
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 96/144 (66%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 43 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 102
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 103 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 154
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 155 GAQQALRRTMEIYSKTTRFALACN 178
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 108/163 (66%), Gaps = 20/163 (12%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 37 AAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 96
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEA 164
G + Y + +LELNASD+RGI+VVR +I+ FA +++ G+ Q K+++LDEA
Sbjct: 97 GSQ-YGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQ--------SVKMVLLDEA 147
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
D+MT+DAQ ALRR +E +++ TRF ICN++ SRCT
Sbjct: 148 DAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCT 190
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 98/151 (64%), Gaps = 5/151 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + +V E+ L + PH+LFYGPPGTGKT+T LA A ++
Sbjct: 14 NMPWVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADS 166
P+ S VLELNASDDRGI +VR +I FA + S + + P K+I+LDEAD+
Sbjct: 74 APKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMP----KLIVLDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT+DAQ+ALRR +E ++ RF ICNY+S+
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSK 160
>gi|307179094|gb|EFN67566.1| Replication factor C subunit 2 [Camponotus floridanus]
Length = 349
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 100/164 (60%), Gaps = 8/164 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S ++K K + PW+EKYRP+ D+ E+ V L + N P+++ G
Sbjct: 17 PSTSNSDMKIKEKDSKSQNLPWIEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 77 PPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN
Sbjct: 129 NLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACN 172
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 108/163 (66%), Gaps = 20/163 (12%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 37 AAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 96
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEA 164
G + Y + +LELNASD+RGI+VVR +I+ FA +++ G+ Q K+++LDEA
Sbjct: 97 GSQ-YGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQ--------SVKMVLLDEA 147
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
D+MT+DAQ ALRR +E +++ TRF ICN++ SRCT
Sbjct: 148 DAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCT 190
>gi|45382983|ref|NP_990861.1| replication factor C subunit 2 [Gallus gallus]
gi|1703053|sp|P53033.1|RFC2_CHICK RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|527669|gb|AAA20552.1| replication factor C/activator 1 subunit [Gallus gallus]
Length = 359
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 96/144 (66%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 102 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 153
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 154 GAQQALRRTMEIYSKTTRFALACN 177
>gi|395843019|ref|XP_003794301.1| PREDICTED: replication factor C subunit 2 [Otolemur garnettii]
Length = 352
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPIKLNEVVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|156379406|ref|XP_001631448.1| predicted protein [Nematostella vectensis]
gi|156218489|gb|EDO39385.1| predicted protein [Nematostella vectensis]
Length = 401
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L + N P+++ GPPGTGKTT+ L +A L G
Sbjct: 54 PWVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCLARALLGV 113
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 114 SL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 165
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 166 GAQQALRRTMEIYSKTTRFALACN 189
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 98/147 (66%), Gaps = 10/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S TRF CNY S+
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSK 153
>gi|451994907|gb|EMD87376.1| hypothetical protein COCHEDRAFT_1144919 [Cochliobolus
heterostrophus C5]
Length = 353
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 92/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PHM+ G PG GKTT+ L +AHQL G
Sbjct: 30 PWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLAHQLLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P K++ILDEADSMT
Sbjct: 89 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRQKLVILDEADSMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 142 GAQQALRRTMEIYSATTRFAFACN 165
>gi|301769425|ref|XP_002920130.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Ailuropoda melanoleuca]
Length = 352
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 A-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|354545639|emb|CCE42366.1| hypothetical protein CPAR2_200090 [Candida parapsilosis]
Length = 320
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 92/148 (62%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 8 PWVEKYRPHVLDDIVGNEETIERLKIIVQDGNMPNMIISGLPGIGKTTSVHCLAYELLGK 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 68 EHYHQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRTKIIILDEADSMTP 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 121 GAQQALRRTMEIYSNTTRFAFACNQSSK 148
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 102/149 (68%), Gaps = 11/149 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DVA +E++ + PH+L YGPPGTGKT+T LA+A Q++G
Sbjct: 37 PWVEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPPGTGKTSTILAVARQIYGN 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
L + LELN+SD+RGI VVR +I+ FA+ +V S + +K+IILDE D+MT
Sbjct: 97 SL-ANMTLELNSSDERGIGVVRQEIQDFASTRSVFSNK---------FKLIILDECDAMT 146
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISR 197
+DAQ ALRR +E Y++ RF ICNY+S+
Sbjct: 147 QDAQAALRRVIEKYTRNARFCLICNYVSK 175
>gi|224013894|ref|XP_002296611.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220968963|gb|EED87307.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 336
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV E+ + L E N P+++ GPPGTGKTT+ A+A QL G
Sbjct: 19 PWVEKYRPRNLDDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGS 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASD RGI+VVR KIK FA V P +KIIILDEADSMT
Sbjct: 79 A-YSNGVLELNASDSRGIDVVRNKIKGFAMNKV-------NLPVGRHKIIILDEADSMTS 130
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 131 AAQQALRRTMEIYSNTTRFALACN 154
>gi|11177922|ref|NP_064406.1| replication factor C subunit 2 [Mus musculus]
gi|23813636|sp|Q9WUK4.1|RFC2_MOUSE RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|4972952|gb|AAD34861.1|AF139987_4 replication factor C, 40kDa subunit [Mus musculus]
gi|9800515|gb|AAF99332.1|AF289664_3 RFC2 [Mus musculus]
gi|18606185|gb|AAH23028.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|26344918|dbj|BAC36108.1| unnamed protein product [Mus musculus]
gi|68534875|gb|AAH99370.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|74185767|dbj|BAE32762.1| unnamed protein product [Mus musculus]
gi|148687476|gb|EDL19423.1| replication factor C (activator 1) 2, isoform CRA_a [Mus musculus]
Length = 349
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>gi|207341952|gb|EDZ69867.1| YNL290Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 181
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 107/168 (63%), Gaps = 14/168 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
Y + VLELNASDDRGI+VVR +IK FA+ G +K+IILDEAD+M
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG----------FKLIILDEADAM 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
T AQNALRR +E Y+K TRF + NY + T AL S F F L
Sbjct: 123 TNAAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFRFQPL 169
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 23 PWVEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPARHKIVILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME +S TRF CN
Sbjct: 135 GAQQALRRTMEIFSNTTRFCLACN 158
>gi|308485377|ref|XP_003104887.1| CRE-RFC-2 protein [Caenorhabditis remanei]
gi|308257208|gb|EFP01161.1| CRE-RFC-2 protein [Caenorhabditis remanei]
Length = 329
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 96/144 (66%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E +V L + N P+++ GPPG GKTT+ A+A +L G
Sbjct: 11 PWVEKYRPQVLSDIVGNENMVSRLEVIAKEGNVPNIILSGPPGIGKTTSVWALARELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ K VLELNASD+RGI+VVR +IKTFA Q + P +KIIILDEADSMT+
Sbjct: 71 KV-KEAVLELNASDERGIDVVRNRIKTFA-------QTKVTLPEGRHKIIILDEADSMTD 122
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 123 GAQQALRRTMELYSKTTRFALACN 146
>gi|409096241|ref|ZP_11216265.1| replication factor C small subunit [Thermococcus zilligii AN1]
Length = 934
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 98/145 (67%), Gaps = 9/145 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP++++D+ Q +V+ L + +T + PH+LF GPPG GKT+ ALA+A +LF
Sbjct: 12 EKPWVEKYRPERLEDIVGQAHIVKRLKHYAKTGSMPHLLFAGPPGVGKTSAALALARELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFIC 192
T+DAQ ALRRTME +S RF C
Sbjct: 123 TQDAQQALRRTMEMFSNNVRFILSC 147
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACN 162
>gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium
dendrobatidis JAM81]
Length = 340
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 98/156 (62%), Gaps = 9/156 (5%)
Query: 43 PVLQSSQ-PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
P+ +S + PW+EKYRP + D+ EE V L + N P+++ G PG GKTT+ L
Sbjct: 13 PISESPELPWIEKYRPLVLSDIVGNEETVARLQIIAQEGNMPNIIIAGSPGIGKTTSILC 72
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+AH+L G YK VLELNASDDRGI VVR +IK FA Q++ P +KI+IL
Sbjct: 73 LAHELLGSA-YKEGVLELNASDDRGIEVVRNRIKMFA-------QKKVTLPPGRHKIVIL 124
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DEADSMT AQ ALRRTME YS TRF CN S+
Sbjct: 125 DEADSMTSGAQQALRRTMEIYSNTTRFALACNLSSK 160
>gi|351705383|gb|EHB08302.1| Replication factor C subunit 2 [Heterocephalus glaber]
Length = 352
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPIKLNEIVGNEDTVSRLEVFSREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPRGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 103/148 (69%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 41 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 101 KEFGSMVLELNASDDRGIEIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 153 DAQNALRRVIEKFTENTRFCLICNYLSK 180
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACN 162
>gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
Length = 361
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%), Gaps = 9/157 (5%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP +++V Q+E+V + +ET PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPPGTGKTSTIIALAKEIYGATN 85
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMTED 170
YK+ +LELNASDDRGI+VVR +IK FA+ + + +K+IILDEAD+MT
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 171 AQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQN+LRR +E ++K RF + NY ISRCT
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCT 182
>gi|424513766|emb|CCO66388.1| replication factor C subunit 2 [Bathycoccus prasinos]
Length = 373
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 97/147 (65%), Gaps = 8/147 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++QPW+EK+RP ++ D+ EE + + +ET + P++L GPPG GKTT+ +A L
Sbjct: 22 ANQPWIEKWRPTKLDDIVGHEETLNQMRGMIETGSMPNLLLSGPPGCGKTTSVHVLARTL 81
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + YK VLELNASD+RGI+VVR KIK FA Q++ P KIIILDEAD+
Sbjct: 82 LG-DRYKDAVLELNASDERGIDVVRNKIKMFA-------QKKVTLPAGRCKIIILDEADA 133
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICN 193
MT+ AQ A+RRTME YS TRF CN
Sbjct: 134 MTKGAQQAMRRTMEIYSATTRFALACN 160
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 92/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV + + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 23 PWVEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG+++VR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGVDIVRNKIKNFA-------QKKVSLPPGRHKIVILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF F CN
Sbjct: 135 AAQQALRRTMEIYSNTTRFCFACN 158
>gi|385301010|gb|EIF45243.1| rfc3p [Dekkera bruxellensis AWRI1499]
Length = 330
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 106/165 (64%), Gaps = 21/165 (12%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L + PWVEKYRP+ + V Q+E ++ + + PH+LFYGPPG+GKT+T +A+A
Sbjct: 6 LHENLPWVEKYRPQNLDQVYGQQETIQTIRKFAQDGRIPHLLFYGPPGSGKTSTIIALAR 65
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILD 162
+++G Y++ VLELNASDDRGI+ VR +IK FA+ SG +K++ILD
Sbjct: 66 EIYGKN-YRNMVLELNASDDRGIDXVRDQIKNFASTRQIFSSG----------FKLVILD 114
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
EAD+MT AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 115 EADAMTNTAQNALRRIIEKYTKNTRFCILANYAHKINPALMSRCT 159
>gi|348568402|ref|XP_003469987.1| PREDICTED: replication factor C subunit 2-like [Cavia porcellus]
Length = 352
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 105/176 (59%), Gaps = 16/176 (9%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQ--------PWVEKYRPKQVKDVAHQEEVVRVLTNTL 77
Q+S E S + + AP + PWVEKYRP ++ ++ E+ V L
Sbjct: 3 VQTSSEGSREPGPQDAAPAPSKASGSASHYELPWVEKYRPIKLNEIVGNEDTVSRLEVFA 62
Query: 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137
N P+++ GPPGTGKTT+ L +A L GP + K VLELNAS+DRGI+VVR KIK F
Sbjct: 63 REGNVPNIIIAGPPGTGKTTSILCLARALLGPAM-KDAVLELNASNDRGIDVVRNKIKMF 121
Query: 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
A Q++ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN
Sbjct: 122 A-------QQKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 170
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 101/169 (59%), Gaps = 9/169 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 25 PWVEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK+FA Q++ P +KI+ILDEADSMT
Sbjct: 84 DGYKEGVLELNASDERGIDVVRNKIKSFA-------QKKVTLPPGRHKIVILDEADSMTA 136
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ ALRRTME Y+ TRF CN +S + S + L DQ
Sbjct: 137 GAQQALRRTMEIYANTTRFALACN-MSNKIIEPIQSRCAILRYSKLRDQ 184
>gi|340522843|gb|EGR53076.1| replication factor C subunit 4 [Trichoderma reesei QM6a]
Length = 357
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 113/198 (57%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D+ K ++II
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYAKLTDE-QVVKRLLQII 203
Query: 230 YASTLKFLEGFGLSLTYS 247
A +++ + +L +S
Sbjct: 204 EAEKVEYSDDGLAALVFS 221
>gi|384248690|gb|EIE22173.1| DNA replication factor C complex subunit 2 [Coccomyxa
subellipsoidea C-169]
Length = 366
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 96/152 (63%), Gaps = 8/152 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S PWVEK+RP VKD+ + V L E N P+++ GPPGTGKTT+ L +A
Sbjct: 40 DSGIPWVEKFRPLYVKDIVGNTDAVDRLQVISEEGNMPNIILAGPPGTGKTTSILCLARA 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G + YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEAD
Sbjct: 100 LLG-QNYKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT AQ ALRRTME YS TRF CN S+
Sbjct: 152 SMTTGAQQALRRTMEIYSNTTRFALACNTSSK 183
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + ++ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 23 PWVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLYKD 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 83 KEFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 135 DAQNALRRVIEKFTENTRFCLICNYLSK 162
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 103/154 (66%), Gaps = 11/154 (7%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRP++++DV +++ R L + +++ N PH+LF GPPG GKT A+A+A
Sbjct: 1 MAEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDE 163
+L+G E + S +ELNASD+RGI+VVR IK FA A +G + +KII LDE
Sbjct: 61 ELYG-ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK---------FKIIFLDE 110
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
AD++T DAQ+ALRRTME Y+ RF CNY S+
Sbjct: 111 ADALTSDAQSALRRTMERYAATCRFIISCNYSSK 144
>gi|358377812|gb|EHK15495.1| hypothetical protein TRIVIDRAFT_38974 [Trichoderma virens Gv29-8]
Length = 391
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 104/165 (63%), Gaps = 11/165 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDTLPWVEKYRPVTLDDVSGHQDILATINKFVESNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + VLELNASDDRGI+VVR +IKTFA+ + +K+IILD
Sbjct: 100 IYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGSSAAKSSSIAGFKLIILD 159
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
EAD+MT AQ ALRR ME Y+ TRF I NY +SRCT
Sbjct: 160 EADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCT 204
>gi|338712627|ref|XP_001504577.3| PREDICTED: replication factor C subunit 2-like isoform 1 [Equus
caballus]
Length = 353
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 97/145 (66%), Gaps = 9/145 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVV-RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
PWVEKYRP ++ ++ E+ V R+ + N P+++ GPPGTGKTT+ L +A L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVSLCREGNVPNIIIAGPPGTGKTTSILCLARALLG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 95 PAL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMT 146
Query: 169 EDAQNALRRTMETYSKVTRFFFICN 193
+ AQ ALRRTME YSK TRF CN
Sbjct: 147 DGAQQALRRTMEIYSKTTRFALACN 171
>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|407035358|gb|EKE37658.1| replication factor C familiy protein [Entamoeba nuttalli P19]
gi|449710429|gb|EMD49506.1| replication factor C familiy protein, putative [Entamoeba
histolytica KU27]
Length = 325
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 100/159 (62%), Gaps = 17/159 (10%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + E ++ L + PHMLFYGPPGTGKTTTALAI QL
Sbjct: 2 SLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLC 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + + + VLELNASD+RGI+VVR +IK+FA+ R C K IILDE+D +
Sbjct: 62 GTK-FSALVLELNASDERGIDVVRDQIKSFAST------RTLYTNCT--KFIILDESDKL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRC 198
T+DAQNALRRT+E +S RF FICN + SRC
Sbjct: 113 TKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRC 151
>gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 539
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 98/152 (64%), Gaps = 9/152 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + E ++ L + PHMLFYGPPGTGKTTTALAI QL
Sbjct: 2 SLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLC 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + + + VLELNASD+RGI+VVR +IK+FA+ R C K IILDE+D +
Sbjct: 62 GTK-FSALVLELNASDERGIDVVRDQIKSFAST------RTLYTNCT--KFIILDESDKL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T+DAQNALRRT+E +S RF FICN + T
Sbjct: 113 TKDAQNALRRTLEQFSANCRFIFICNEVHLIT 144
>gi|367037019|ref|XP_003648890.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
gi|346996151|gb|AEO62554.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
Length = 358
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 110/198 (55%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 35 PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 94 DSYKEAVLELNASDERGIEVVRQRIKGFA-------QKKVTLPAGRHKIVILDEADSMTS 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S F L D K ++II
Sbjct: 147 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRFAKLTDA-QVVKRLLQII 204
Query: 230 YASTLKFLEGFGLSLTYS 247
A +++ + +L +S
Sbjct: 205 EAEKVEYSDDGLAALVFS 222
>gi|448524726|ref|XP_003869003.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380353356|emb|CCG22866.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 320
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 92/148 (62%), Gaps = 7/148 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 8 PWVEKYRPHVLDDIVGNEETIERLKVIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGK 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 68 EHYHQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRTKIIILDEADSMTP 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 121 GAQQALRRTMEIYSNTTRFAFACNQSSK 148
>gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST]
gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST]
Length = 341
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 109/174 (62%), Gaps = 16/174 (9%)
Query: 21 QKFSTTQSSP-EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
++ ++T S+P E E K+K S PW+EKYRP++ +++ EE V L
Sbjct: 3 EEVASTSSAPGAPKEAEGKKK-------SLPWIEKYRPQRFEEIVGNEETVARLGIFASQ 55
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
N P+++ GPPG GKTTT L +A L GP ++ VLELNAS++RGI+VVR+KIK FA
Sbjct: 56 GNAPNIIIAGPPGVGKTTTILCLARILLGPN-FREAVLELNASNERGIDVVRSKIKMFA- 113
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
Q++ P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN
Sbjct: 114 ------QQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACN 161
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 110/173 (63%), Gaps = 16/173 (9%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K++ + ++ W EKYRP+ + +V +Q+E+V L +E + PHMLF GPPGTGKTT A
Sbjct: 19 KVSGLSEAELLWAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMA 78
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKI 158
+AH L+G + YK +LELNASD+R I V+R K+K FA + VG P+KI
Sbjct: 79 HCLAHDLYGDD-YKKYMLELNASDERKIEVIRGKVKEFARSRVVGE---------VPFKI 128
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
++LDEAD+MT DAQ ALRR ME YS TRF NY S+ + +A+F F
Sbjct: 129 VLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRF 181
>gi|410984622|ref|XP_003998626.1| PREDICTED: replication factor C subunit 2 isoform 1 [Felis catus]
Length = 352
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KI+ILDEADSMT+
Sbjct: 95 A-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIMILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1]
Length = 354
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 111/198 (56%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E V L N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPVGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D K ++II
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYAKLTDAQVL-KRLMQII 203
Query: 230 YASTLKFLEGFGLSLTYS 247
A ++F + +L +S
Sbjct: 204 EAEKVEFSDDGLAALVFS 221
>gi|392575134|gb|EIW68268.1| hypothetical protein TREMEDRAFT_44679 [Tremella mesenterica DSM
1558]
Length = 346
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L E N PH++ G PG GKTT+ +AH L G
Sbjct: 26 PWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLG- 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 85 ESYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 137
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 138 GAQQALRRTMEIYSNTTRFALACN 161
>gi|296192221|ref|XP_002743970.1| PREDICTED: replication factor C subunit 2 isoform 1 [Callithrix
jacchus]
Length = 352
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 94/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR K+K FA Q + P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKVKMFA-------QHKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + DV Q E+V + ++ PH+LFYGPPGTGKT+ +A++ +++G
Sbjct: 9 PWIEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYGT 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 69 N-YRNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEADAMTN 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 120 AAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCT 157
>gi|17541988|ref|NP_500069.1| Protein RFC-2 [Caenorhabditis elegans]
gi|351021221|emb|CCD63484.1| Protein RFC-2 [Caenorhabditis elegans]
Length = 334
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 96/148 (64%), Gaps = 8/148 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + D+ E +V L N P+++ GPPG GKTT+ A+A +
Sbjct: 7 QQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARE 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G ++ K VLELNASD+RGI+VVR +IKTFA Q + P +KIIILDEAD
Sbjct: 67 LLGDKV-KEAVLELNASDERGIDVVRHRIKTFA-------QTKVTLPEGRHKIIILDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICN 193
SMT+ AQ ALRRTME Y+K TRF CN
Sbjct: 119 SMTDGAQQALRRTMEMYTKTTRFALACN 146
>gi|408397489|gb|EKJ76631.1| hypothetical protein FPSE_03181 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 111/198 (56%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E V L N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPVGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D K ++II
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYAKLTDAQVL-KRLMQII 203
Query: 230 YASTLKFLEGFGLSLTYS 247
A ++F + +L +S
Sbjct: 204 EAEKVEFSDDGLAALVFS 221
>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 101/162 (62%), Gaps = 17/162 (10%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q+ PWVEKYRP ++ DV E + + ++ PH+ F+GPPGTGKTTTA+AI+HQ
Sbjct: 4 QNVLPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + S VLELNASD+RGI+ VR +IK FA+ G P K+IILDE+D
Sbjct: 64 LYGNDTSMS-VLELNASDERGIDTVRMRIKDFASSRSLFG--------PKIKLIILDESD 114
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+MT AQ ALRR ME ++ RF ICNY SRCT
Sbjct: 115 AMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRCT 156
>gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 333
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 120/221 (54%), Gaps = 10/221 (4%)
Query: 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHML 86
+SS ++ +K V PWVEKYRP + DV E + L + N PH++
Sbjct: 11 ESSTSAAKKVLKANTNGVTNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVI 70
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
G PG GKTT+ L +A QL G + YK VLELNASD+RGI+VVR +IK FA Q
Sbjct: 71 ISGMPGIGKTTSVLCLARQLLG-DSYKEAVLELNASDERGIDVVRNRIKGFA-------Q 122
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206
++ P +K++ILDEADSMT AQ ALRRTME YS TRF F CN S L S
Sbjct: 123 KKVTLPAGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQ-SNKIIEPLQSR 181
Query: 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247
+ L D K ++II A +++ E +L +S
Sbjct: 182 CAILRYARLTDA-QVVKRLLQIIEAEKVEYSEDGLAALVFS 221
>gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 354
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 112/198 (56%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPIFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D K ++II
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYAKLTDA-QVVKRLMQII 203
Query: 230 YASTLKFLEGFGLSLTYS 247
A +++ + +L +S
Sbjct: 204 EAEKVEYSDDGLAALVFS 221
>gi|118576898|ref|YP_876641.1| replication factor C small subunit [Cenarchaeum symbiosum A]
gi|118195419|gb|ABK78337.1| replication factor C small subunit [Cenarchaeum symbiosum A]
Length = 311
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 98/148 (66%), Gaps = 10/148 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGP 109
WVEKYRPK++ DV Q+E++ + L+ A PH+LF G G GKTTTAL IA Q+ GP
Sbjct: 2 WVEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQVLGP 61
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + +LELNASD+RGI +VR K+K F+ A + P+KIIILDEAD MT
Sbjct: 62 HI-QDNLLELNASDERGIGMVRDKVKRFSNFAA--------FEEIPFKIIILDEADEMTA 112
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQ ALRRT+E SK+ RF + N IS+
Sbjct: 113 DAQTALRRTIEDASKICRFIIVANNISK 140
>gi|302421348|ref|XP_003008504.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
gi|261351650|gb|EEY14078.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
Length = 361
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 113/198 (57%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 97 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D K ++II
Sbjct: 150 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYGRLTDA-QVVKRLMQII 207
Query: 230 YASTLKFLEGFGLSLTYS 247
A ++++ + +L +S
Sbjct: 208 EAESVQYSDDGLAALVFS 225
>gi|31563534|ref|NP_852136.1| replication factor C subunit 2 isoform 1 [Homo sapiens]
gi|2507300|sp|P35250.3|RFC2_HUMAN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|1590811|gb|AAB09786.1| replication factor C, 40-kDa subunit [Homo sapiens]
gi|2914760|gb|AAC04860.1| replication factor C subunit 2 [Homo sapiens]
gi|30172692|gb|AAP22334.1| unknown [Homo sapiens]
gi|119590013|gb|EAW69607.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|119590014|gb|EAW69608.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|197692187|dbj|BAG70057.1| replication factor C 2 isoform 1 [Homo sapiens]
gi|208967280|dbj|BAG73654.1| replication factor C (activator 1) 2 [synthetic construct]
Length = 354
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K +LELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 97 AL-KDAMLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 148
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 149 GAQQALRRTMEIYSKTTRFALACN 172
>gi|197692437|dbj|BAG70182.1| replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K +LELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 97 AL-KDAMLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 148
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 149 GAQQALRRTMEIYSKTTRFALACN 172
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V Q ++V + + PH+LFYGPPGTGKT+T A+A +++G
Sbjct: 11 PWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIYGS 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ +K+IILDEAD+MT
Sbjct: 71 N-YRNMVLELNASDDRGIDVVRNQIKEFASTM--------QIFSKGFKLIILDEADAMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQN+LRR +E Y+K TRF + NY +SRCT
Sbjct: 122 TAQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCT 159
>gi|346466437|gb|AEO33063.1| hypothetical protein [Amblyomma maculatum]
Length = 377
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ EE + L N P+++ GPPG GKTTT L +A L GP
Sbjct: 60 PWVEKYRPAKFSEIVGNEETIARLEIFSREGNVPNVILSGPPGVGKTTTILCLARILLGP 119
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMTE
Sbjct: 120 S-FREAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGKHKIIILDEADSMTE 171
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 172 GAQQALRRTMEIYSKTTRFALACN 195
>gi|346974683|gb|EGY18135.1| replication factor C subunit 4 [Verticillium dahliae VdLs.17]
Length = 361
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 113/198 (57%), Gaps = 10/198 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 97 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ ALRRTME YS TRF F CN S L S + L D K ++II
Sbjct: 150 GAQQALRRTMEIYSNTTRFAFACNQ-SNKIIEPLQSRCAILRYGRLTDA-QVVKRLMQII 207
Query: 230 YASTLKFLEGFGLSLTYS 247
A ++++ + +L +S
Sbjct: 208 EAESVQYSDDGLAALVFS 225
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ +Q WVEKYRP ++ DVA ++++ + P++L YGPPGTGKT+T LA+A +
Sbjct: 28 KKNQMWVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPYLLLYGPPGTGKTSTILAVAKE 87
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GP+ + LELNASDDRGI+VVR +I FA S R G +K+IILDE D
Sbjct: 88 LYGPQ-FSQMTLELNASDDRGIDVVRNEISAFA-----STMRFGSNAG--FKLIILDECD 139
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
SMT+DAQ ALRR +E Y+K TRF I NY+S+ AL S F F L
Sbjct: 140 SMTKDAQFALRRIIEKYTKHTRFCLIGNYVSKV-IPALQSRCTRFRFSPL 188
>gi|385304309|gb|EIF48332.1| dna replication factor c subunit [Dekkera bruxellensis AWRI1499]
Length = 212
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 97/150 (64%), Gaps = 9/150 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ +KDV ++ + L + N PHM+ G PG GKTT+ + +A +LF
Sbjct: 13 PWVEKYRPRYLKDVVGNKDTIESLERIAQQGNMPHMILSGLPGIGKTTSIMCLARELFHD 72
Query: 110 E--LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ L K+ +LELNASDDRGI+VVR +IK FA Q++ P KI++LDEADSM
Sbjct: 73 DQKLMKNAILELNASDDRGIDVVRNQIKQFA-------QKKVSLPPNREKIVVLDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T AQ ALRRTME YS TRF F CN S+
Sbjct: 126 TPXAQQALRRTMEIYSNTTRFAFACNQSSK 155
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + + L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACN 162
>gi|114613995|ref|XP_001149874.1| PREDICTED: replication factor C subunit 2 isoform 4 [Pan
troglodytes]
gi|410213960|gb|JAA04199.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410213962|gb|JAA04200.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250164|gb|JAA13049.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250166|gb|JAA13050.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250168|gb|JAA13051.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250170|gb|JAA13052.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250172|gb|JAA13053.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
Length = 354
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K +LELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 97 AL-KDAMLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 148
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 149 GAQQALRRTMEIYSKTTRFALACN 172
>gi|344303413|gb|EGW33662.1| hypothetical protein SPAPADRAFT_59031 [Spathaspora passalidarum
NRRL Y-27907]
Length = 324
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 94/148 (63%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +++D+ EE V L + N P+M+ G PG GKTT+ +AH+L G
Sbjct: 12 PWVEKYRPYKLQDIVGNEETVERLKIIAKDGNMPNMIISGLPGIGKTTSVHCLAHELLG- 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 EYYHQATLELNASDDRGIDVVRNKIKQFA-------QTKIVLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS TRF F CN S+
Sbjct: 124 GAQQALRRTMEIYSNSTRFAFACNQSSK 151
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 94/147 (63%), Gaps = 8/147 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ W+EKYRP +KDV EV R L N P++L GPPGTGKTT+ L +AH++
Sbjct: 2 SNDIWIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEM 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G +K+ VLELNASDDRG++VVR IK FA +V P +KIIILDE DS
Sbjct: 62 LGNH-FKNAVLELNASDDRGVDVVRGAIKNFAKKSV-------VLPPNKHKIIILDEVDS 113
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICN 193
MTE AQ ALRR ME YSK TRF CN
Sbjct: 114 MTEAAQQALRRIMEIYSKTTRFALACN 140
>gi|322795578|gb|EFZ18260.1| hypothetical protein SINV_11151 [Solenopsis invicta]
Length = 354
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ D+ E+ V L + N P+++ GPPG GKTTT L +A L GP
Sbjct: 40 PWIEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKTTTILCLARTLLGP 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS++RGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 100 A-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKVNLPKGKHKIIILDEADSMTD 151
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 152 GAQQALRRTMEIYSHTTRFALACN 175
>gi|346325998|gb|EGX95594.1| activator 1 subunit 3 [Cordyceps militaris CM01]
Length = 420
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 116/200 (58%), Gaps = 22/200 (11%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PW+EKYRP + DV ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 41 EDTLPWIEKYRPVSLDDVEGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 100
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV------AVGSGQRRGGYPCPPYKII 159
++G + VLELNASDDRGI+VVR +IKTFA+ + YK+I
Sbjct: 101 IYGAAQARQMVLELNASDDRGIDVVREQIKTFASTKQIFNMGGAAAAAGRSSAMAGYKLI 160
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT---FSALFSFLL 208
ILDEAD+MT AQ ALRR ME Y+ TRF I NY +SRCT FS L +
Sbjct: 161 ILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADI 220
Query: 209 FFMFFSLLDQISFDKEYIRI 228
+ ++D+ E +RI
Sbjct: 221 RQLVVKVVDE-----EGVRI 235
>gi|341889869|gb|EGT45804.1| hypothetical protein CAEBREN_18241 [Caenorhabditis brenneri]
Length = 326
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E V L + N P+++ GPPG GKTT+ A+A +L G
Sbjct: 11 PWVEKYRPQLLSDIVGNENNVDRLKVIAKEGNLPNVILSGPPGCGKTTSVWAVARELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ K VLELNASD+RGI+VVR +IKTFA Q + P +KIIILDEADSMTE
Sbjct: 71 KV-KDAVLELNASDERGIDVVRNRIKTFA-------QTKVTLPEGRHKIIILDEADSMTE 122
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 123 GAQQALRRTMELYSKTTRFALACN 146
>gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
Length = 362
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 105/173 (60%), Gaps = 12/173 (6%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQ----PWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
T + +P+K +V + +S PWVEKYRP ++ DV E+ V L +
Sbjct: 14 TNKEAPKKDSSKVDKAKPGTSGTSSGYELPWVEKYRPAKLCDVVGNEDTVSRLEVFSQQG 73
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
N P+++ G PG GKTT+ L +A L GP YK VLELNAS+DRGI+VVR KIK FA
Sbjct: 74 NMPNIIIAGSPGIGKTTSILCLARTLLGPA-YKDAVLELNASNDRGIDVVRNKIKMFA-- 130
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
Q++ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN
Sbjct: 131 -----QQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 178
>gi|303281602|ref|XP_003060093.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458748|gb|EEH56045.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 107/165 (64%), Gaps = 10/165 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ DVA ++++ + + PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 2 WVEKYRPSRLADVAAHKDIIDTIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGPA 61
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ LELNASDDRGI+VVR +I++FA S R + +K+IILDE DSMT+D
Sbjct: 62 -FAQMTLELNASDDRGIDVVRNEIQSFA-----STMR---FNATGFKLIILDECDSMTKD 112
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215
AQ ALRR +E Y+K TRF I NY+S+ AL S F F L
Sbjct: 113 AQFALRRVIEKYTKHTRFCLIGNYVSKI-IPALQSRCTRFRFAPL 156
>gi|367007966|ref|XP_003688712.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
gi|357527022|emb|CCE66278.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 103/158 (65%), Gaps = 17/158 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V Q ++V + + PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 12 PWVEKYRPSSLDEVYGQPDIVNTVRKFVAEGKLPHLLFYGPPGTGKTSTIIALAKEIYGK 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 72 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIFS-KGFKLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNY--------ISRCT 199
AQNALRR +E Y+K TRF + NY +SRCT
Sbjct: 123 AAQNALRRIIEKYTKNTRFCILANYAYKLTPALLSRCT 160
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 9/148 (6%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP + +V +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 33 VEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPP- 91
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
Y+ +LELNASDDRGI+VVR +IK+FA V + +K++ILDEAD MT+ A
Sbjct: 92 YQKHILELNASDDRGIDVVRDQIKSFAMTKVLFSK--------GFKLVILDEADMMTQAA 143
Query: 172 QNALRRTMETYSKVTRFFFICNYISRCT 199
Q+ALRR +ET++K RF +CNY+++ T
Sbjct: 144 QSALRRVIETHTKNVRFCILCNYVNKIT 171
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 99/147 (67%), Gaps = 9/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRPK + +V Q+E+V L + ++ + PH+LF GP GTGKTT A+A+A +LFG
Sbjct: 5 WVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGDN 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++S ELNASD+RGI +VRTKIK +A A + +KII LDEAD++T D
Sbjct: 65 -WRSSFHELNASDERGIGIVRTKIKEYARTAAPND--------VGFKIIFLDEADALTPD 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS+ RF CNY S+
Sbjct: 116 AQAALRRTMEMYSRTCRFILSCNYSSK 142
>gi|294867359|ref|XP_002765080.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239864960|gb|EEQ97797.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 344
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 94/146 (64%), Gaps = 9/146 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E ++ L E + P++L GPPG GKTT+ + +A L G
Sbjct: 16 PWVEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLGE 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP--PYKIIILDEADSM 167
+L K+ VLELNASDDRGI+VVR +IKTFA Q++ P KI+ILDEADSM
Sbjct: 76 DLVKTAVLELNASDDRGIDVVRNRIKTFA-------QQKISLPAGGCQQKIVILDEADSM 128
Query: 168 TEDAQNALRRTMETYSKVTRFFFICN 193
TE AQ A+RRTME +S TRF CN
Sbjct: 129 TEAAQQAMRRTMEIHSATTRFALACN 154
>gi|443732297|gb|ELU17070.1| hypothetical protein CAPTEDRAFT_192756 [Capitella teleta]
Length = 340
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 97/152 (63%), Gaps = 8/152 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP + + VEK+RP ++DV EE + L E N P+++ GPPGTGKTT+ L
Sbjct: 11 APSVTPAMTMVEKFRPILLRDVVGNEETISRLQVFAEQGNVPNLIIAGPPGTGKTTSILC 70
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
++ L G YK VLELNAS+DRGI+VVR KIK FA Q++ P +K+IIL
Sbjct: 71 LSRALLGAS-YKDAVLELNASNDRGIDVVRNKIKMFA-------QKKVSLPAGRHKVIIL 122
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
DEADSMT+ AQ ALRRTME YSK TRF CN
Sbjct: 123 DEADSMTDGAQQALRRTMEIYSKTTRFALACN 154
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 99/155 (63%), Gaps = 12/155 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ D+ ++++ L N E PH+LF+GPPGTGKT+T +A++ L+G
Sbjct: 8 PWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGS 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-------VGSGQRRGGYPCPPYKIIILD 162
+ S V+ELNASD+RGI VR +IKTFA + VGS P K+IILD
Sbjct: 68 HRH-SYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGS----DSGPRTNLKLIILD 122
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
EAD MT AQN+LRR ME YS RF ICN+++R
Sbjct: 123 EADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNR 157
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 98/151 (64%), Gaps = 5/151 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + ++ +E+ L + PH+LFYGPPGTGKT+T LA A L+
Sbjct: 14 NMPWVEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADS 166
+ S VLELNASDDRGI +VR +I FA + + + + P K+IILDEAD+
Sbjct: 74 TSKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP----KLIILDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISR 197
MT+DAQ+ALRR +E ++ RF ICNY+S+
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSK 160
>gi|241725881|ref|XP_002412213.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
gi|215505426|gb|EEC14920.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
Length = 336
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ EE + L N P+++ GPPG GKTTT L ++ L GP
Sbjct: 20 PWVEKYRPAKFNEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLSRILLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q++ P +K+IILDEADSMTE
Sbjct: 80 S-FRDAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVIILDEADSMTE 131
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 132 GAQQALRRTMEIYSKTTRFALACN 155
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 96/161 (59%), Gaps = 12/161 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW EKYRP + + ++++ + + E PH+LF+GPPGTGKT+T LAI+ L+G
Sbjct: 7 PWTEKYRPPDLDSIISHKDIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYG- 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSGQRRGGYPCPPYKIIILDEADS 166
VLELNASDDRGINVVR KIKTFA V S K+IILDEAD
Sbjct: 66 NYANVYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQ 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
MT +Q ALRR ME Y+K RF ICNY+ SRCT
Sbjct: 126 MTNASQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCT 166
>gi|358340400|dbj|GAA48300.1| replication factor C subunit 2, partial [Clonorchis sinensis]
Length = 965
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 94/148 (63%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + LT N P+++ GPPG GKTT+ L +AH L G
Sbjct: 112 PWVEKYRPVVLTDIVGNEATILRLTAFSREGNVPNIIIAGPPGCGKTTSILCLAHALIGS 171
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNAS+DRGI+VVR KIK FA Q++ P KIIILDEADSMTE
Sbjct: 172 S-YKEAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGRQKIIILDEADSMTE 223
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS+ TRF CN S+
Sbjct: 224 GAQQALRRTMEIYSRTTRFALACNDSSK 251
>gi|449673561|ref|XP_002160048.2| PREDICTED: replication factor C subunit 2-like [Hydra
magnipapillata]
Length = 178
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ +EE ++ L E N P+++ GPPG GKTT+ L +A QL
Sbjct: 35 PWVEKYRPLKLTDITGKEETIKRLQVFSEQGNVPNIIIAGPPGIGKTTSILCLARQLLST 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK V+ELNAS++RGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 95 S-YKDAVMELNASNERGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEADSMTS 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMELYSKTTRFALACN 170
>gi|427781667|gb|JAA56285.1| Putative replication factor c activator 1 2 [Rhipicephalus
pulchellus]
Length = 337
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 99/161 (61%), Gaps = 14/161 (8%)
Query: 33 SEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPG 92
+ED K+K PWVEKYRP + ++ EE + L N P+++ GPPG
Sbjct: 9 AEDSQKKK------DCIPWVEKYRPVKFTEIVGNEETIARLEVFSREGNVPNVILSGPPG 62
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
GKTTT L +A L GP ++ VLELNAS+DRGI+VVR KIK FA Q++ P
Sbjct: 63 VGKTTTILCLARILLGPA-FREAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLP 114
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
+KIIILDEADSMTE AQ ALRRTME YSK TRF CN
Sbjct: 115 PGKHKIIILDEADSMTEGAQQALRRTMEIYSKTTRFALACN 155
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 99/147 (67%), Gaps = 9/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRPK + +V Q+E+V L + ++ PH+LF GP GTGKTT A+A+A +LFG E
Sbjct: 5 WVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ ELNASD+RGI +VRTKIK +A A + +KII LDEAD++T D
Sbjct: 64 NWRASFHELNASDERGIGIVRTKIKEYARTAAPND--------VGFKIIFLDEADALTPD 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ ALRRTME YS+ RF CNY S+
Sbjct: 116 AQAALRRTMEMYSRTCRFILSCNYSSK 142
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 100/147 (68%), Gaps = 9/147 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QE++VR L + +++ N PH+LF GPPG GKT A+A+A +FG +
Sbjct: 7 WTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFG-D 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ +ELNASD+RGI VVR IK FA + G+ R +K+I LDEAD++T D
Sbjct: 66 AWQNNFIELNASDERGIEVVRNNIKNFARTS-PLGEAR-------FKVIFLDEADALTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME Y+ RF CNY S+
Sbjct: 118 AQSALRRTMERYTATCRFIISCNYSSK 144
>gi|262401171|gb|ACY66488.1| replication factor C 2 (40kD) isoform 2 [Scylla paramamosain]
Length = 332
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 101/170 (59%), Gaps = 9/170 (5%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
S + P K E K K +P S PW+EKYRP D+ EE V L + N P
Sbjct: 6 SEMEVDPPK-ESRNKDKASPSETSHAPWIEKYRPTTFPDIVGNEETVARLEVFAKQGNVP 64
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
+++ GP G GKTTT L +A L GP ++ V+ELNAS+DRGI+VVR KIK FA
Sbjct: 65 NIIIAGPLGVGKTTTILCLARALLGPS-FREAVMELNASNDRGIDVVRNKIKMFA----- 118
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
Q++ P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN
Sbjct: 119 --QQKVTLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACN 166
>gi|313217116|emb|CBY38291.1| unnamed protein product [Oikopleura dioica]
gi|313225063|emb|CBY20856.1| unnamed protein product [Oikopleura dioica]
Length = 326
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+A +E V L + N P+++ GPPG GKTT+ L +A + G
Sbjct: 10 PWVEKYRPTFMSDIAGNQETVERLAVFAKEGNLPNIIIAGPPGCGKTTSILCLARTMLG- 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E + VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 69 EHFNEAVLELNASNDRGIDVVRNKIKMFA-------QKKCTLPAGKHKIIILDEADSMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 122 GAQQALRRTMEIYSKTTRFALACN 145
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 103/148 (69%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRGVIEKFTENTRFCLICNYLSK 160
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 107/170 (62%), Gaps = 11/170 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ ++D+A E +V L + + + HMLF GP G GKTT A AIA +L+G
Sbjct: 13 EVWIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGI+VVR ++K+FA + GGY Y+II LDEAD++T
Sbjct: 73 -EDWEENFLELNASDERGIDVVRDRVKSFARTSF------GGY---DYRIIFLDEADALT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
DAQ+ALRRTME +S RF CNY S+ + S F F L D+
Sbjct: 123 ADAQSALRRTMEQFSNNVRFILSCNYSSQI-IDPIQSRCAVFRFSPLADE 171
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 106/170 (62%), Gaps = 11/170 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + ++ + HMLF GP GTGKTT+A AIA +L+G
Sbjct: 11 EVWIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYG 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK+FA R + Y+II LDEAD++T
Sbjct: 71 DD-WQEHFLELNASDERGIDVVRDRIKSFA---------RTSFGGVDYRIIFLDEADALT 120
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
DAQ+ALRRTME +S RF CNY S+ + S F F L D+
Sbjct: 121 SDAQSALRRTMEQFSNNVRFIMSCNYSSQI-IDPIQSRCAVFRFSPLGDE 169
>gi|353241984|emb|CCA73760.1| probable RFC2-DNA replication factor C, 41 KD subunit
[Piriformospora indica DSM 11827]
Length = 358
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 100/165 (60%), Gaps = 27/165 (16%)
Query: 37 VKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKT 96
VK + P LQ PWVEKYRPK + +V+ Q+ V VL C H+ + P
Sbjct: 12 VKATIDPKLQ---PWVEKYRPKTMDEVSSQDHAVSVLKKHYSRQTC-HICYSMDP----- 62
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGG-YP 152
L++ RVLELNASD+RGI +VR KIK FA AV S G YP
Sbjct: 63 --------------LFRHRVLELNASDERGIAIVREKIKDFARQTPKAVTSAASDGKVYP 108
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
CPPYK+IILDEADSMT+DAQ ALRR METY+K+TRF ICNY++R
Sbjct: 109 CPPYKLIILDEADSMTQDAQGALRRIMETYAKITRFCLICNYVTR 153
>gi|345311289|ref|XP_001516769.2| PREDICTED: replication factor C subunit 2-like [Ornithorhynchus
anatinus]
Length = 329
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 101/155 (65%), Gaps = 10/155 (6%)
Query: 41 MAPVLQSSQP--WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
MA +L ++ WVEKYRP ++ ++ E+ V L + N P+++ GPPGTGKTT+
Sbjct: 1 MADLLAVARAVTWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTS 60
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
L +A L GP L K VLELNAS+DRGI+VVR KIK FA Q++ P +KI
Sbjct: 61 ILCLARALLGPAL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPRGRHKI 112
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
I+LDEADSMT+ AQ ALRRTME YSK TRF CN
Sbjct: 113 IVLDEADSMTDGAQQALRRTMEIYSKTTRFALACN 147
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,751,782,061
Number of Sequences: 23463169
Number of extensions: 148243741
Number of successful extensions: 714050
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4064
Number of HSP's successfully gapped in prelim test: 16605
Number of HSP's that attempted gapping in prelim test: 691916
Number of HSP's gapped (non-prelim): 26139
length of query: 248
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 109
effective length of database: 9,097,814,876
effective search space: 991661821484
effective search space used: 991661821484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)