BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025762
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 221 bits (563), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 137/203 (67%), Gaps = 10/203 (4%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RCTFSALFSFLLFFMFFSLLDQI 219
R L S F F L D+I
Sbjct: 185 R-IIEPLTSRCSKFRFKPLSDKI 206
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 221 bits (562), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 121/153 (79%), Gaps = 2/153 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
DSMT DAQ+ALRRTMETYS VTRF ICNY++R
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/185 (60%), Positives = 133/185 (71%), Gaps = 7/185 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SR L S F F L D+
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR-IIEPLTSRCSKFRFKPLSDK 205
Query: 219 ISFDK 223
I ++
Sbjct: 206 IQQER 210
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/185 (57%), Positives = 135/185 (72%), Gaps = 19/185 (10%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG---------- 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFF 210
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++R L S F
Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRI-IDPLASRCSKF 211
Query: 211 MFFSL 215
F SL
Sbjct: 212 RFKSL 216
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/167 (59%), Positives = 128/167 (76%), Gaps = 10/167 (5%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+K+E E K+ S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG
Sbjct: 9 KKTEQEAKK--------SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGS 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + G
Sbjct: 61 PGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDG 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
YPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTR 165
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 207 bits (528), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 114/152 (75%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
SMT DAQ ALRRT+ET SK TRF +CNYISR
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISR 158
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 173 bits (439), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 109/162 (67%), Gaps = 7/162 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVL---K 118
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSR 160
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 15/172 (8%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
KM S+ PWVEKYRP ++ ++ E++V+ LT +E PH+LFYGPPGTGKTTT
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPP 155
LA A Q++ P S VLELNASD+RGI+VVR I FA A + G P
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTV---P 136
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY+ SRCT
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCT 188
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 22/202 (10%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L+ W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H
Sbjct: 3 LEEEILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVH 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
L+G Y+ LELNASD+RGI+V+R K+K FA G P+K+++LDEA
Sbjct: 63 DLYGDN-YRQYFLELNASDERGIDVIRNKVKEFARTVAGGN--------VPFKVVLLDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF--------LLFFM 211
D+MT DAQ ALRRTME Y++ TRF CNY+S+ + +ALF F +
Sbjct: 114 DNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLA 173
Query: 212 FFSLLDQISFDKEYIRIIYAST 233
+ + +++ +D++ + IY T
Sbjct: 174 YIAKNEKVEYDQKALETIYDIT 195
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 103/158 (65%), Gaps = 17/158 (10%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + D+ Q+ VV L ++ N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGINV+R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFA--------RSRTPPEIPFKIVLLDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNY--------ISRCTF 200
AQ ALRR ME YS VTRF I NY SRC F
Sbjct: 120 AQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAF 157
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK+++D+ + ++ + N+ + H LFYGPPGTGKT+ LA+ ++F
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIF 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E +++RV+E NASDDRGIN VR KI A V + G P YKIIILDEADSM
Sbjct: 66 -KEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRCT 199
T++AQ+ALR +E YS TRF FICNYI++ T
Sbjct: 125 TDEAQDALRVIIEQYSTATRFCFICNYITKIT 156
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 105/149 (70%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ D+ +QEE+ + L + +E N PH+LF GPPGTGKTT ALA+AH+L+G +
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG-D 62
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI+V+R K+K FA A +G P+KI+ LDEAD++T
Sbjct: 63 AWRENFLELNASDERGIDVIRHKVKEFARAKPIGD---------VPFKIVFLDEADALTR 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME YS+ TRF CNY S+
Sbjct: 114 DAQQALRRIMEKYSQSTRFILSCNYFSKI 142
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 105/160 (65%), Gaps = 15/160 (9%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK + D+ E++ + +T ++ PH+LFYGPPGTGKT+T AIA +L+
Sbjct: 23 SLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y VLELNASDDRGI+VVR +IKTFA+ PYK+IILDEADSM
Sbjct: 83 GDN-YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTT------VPYKLIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
T AQ ALRR +E Y+K TRF +CNY+ SRCT
Sbjct: 136 TNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCT 175
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 108/153 (70%), Gaps = 11/153 (7%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + WVEKYRP+ + ++ QEE+V+ L ++ N PH+LF GPPGTGKTT ALA+AH L
Sbjct: 2 SEELWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEAD 165
+G E ++ LELNASD+RGI+V+R++IK +A + +G P+K++ILDEAD
Sbjct: 62 YG-ESWRDNTLELNASDERGIDVIRSRIKDYARTLPIGD---------VPFKLVILDEAD 111
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198
+MT DAQ ALRRTME +S+ TRF I NY S+
Sbjct: 112 NMTGDAQQALRRTMELFSRNTRFILIANYASKI 144
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 167 bits (423), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 106/153 (69%), Gaps = 9/153 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
D++T DAQ ALRRTME YSK RF CNY+SR
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 105/161 (65%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YTEYFLELNASDERGIDVIRNKVKEFARTVIPGD--------IPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRF 161
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 106/161 (65%), Gaps = 14/161 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +Q+E+V L ++ N PH+LF GPPGTGKTT ALA+ L+G
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA + P+K+I+LDEAD+MT D
Sbjct: 67 -YRQYFLELNASDERGIDVIRNKVKEFARTVASNN--------VPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC-----TFSALFSF 206
AQ ALRRTME Y++ TRF CNY+S+ + +ALF F
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRF 158
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 107/168 (63%), Gaps = 9/168 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI+VVRTKIK FA A G +KII LDEAD++T D
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMGG--------AEFKIIFLDEADALTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ+ALRRTME +S RF CNY SR + S F F L D+
Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRI-IEPIQSRCAVFRFRRLSDE 169
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 100/147 (68%), Gaps = 8/147 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMGG--------APFKIIFLDEADALTSD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S RF CNY S+
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSK 153
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 109/162 (67%), Gaps = 17/162 (10%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP ++DV ++++ L + + PHMLFYGPPGTGKT+T LA A +
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP Y+++++ELNASDDRGI+ VR +IK FA+ R + +K+IILDEAD
Sbjct: 80 IYGPN-YRNQLMELNASDDRGIDAVREQIKNFAST-------RQIF-ASTFKMIILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRCT 199
+MT AQNALRR +E Y+K RF ICNYI SRCT
Sbjct: 131 AMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCT 172
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 100/148 (67%), Gaps = 9/148 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRC 198
AQ ALRR ME Y+ TRF I NY S+
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKI 151
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 101/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRI 144
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 100/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRI 144
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSK 142
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSK 142
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 160 bits (404), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 100/147 (68%), Gaps = 8/147 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA Q+E + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIGG--------APFKIIFLDEADALTAD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISR 197
AQ+ALRRTME +S RF CNY S+
Sbjct: 127 AQSALRRTMERFSSNCRFILSCNYSSK 153
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 100/147 (68%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NYIS
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYIS 142
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 99/149 (66%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRI 144
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 100/149 (67%), Gaps = 11/149 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRC 198
DAQ ALRR ME Y++ TRF + NY+SR
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRI 144
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSK 142
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 118/190 (62%), Gaps = 24/190 (12%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++S PWVEKYRP + +VA E V+ + +E PH+LF+GPPGTGKTTT +A+A Q
Sbjct: 14 ENSLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQ 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G Y++ +LELNASD+RGI+VVR +IKTFA+ SG +K++ILDE
Sbjct: 74 IYGKN-YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------FKLVILDE 122
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNY--------ISRCT---FSALFSFLLFFMF 212
AD+MT AQNALRR +E YS TRF + NY +SRCT FS L +
Sbjct: 123 ADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRL 182
Query: 213 FSLLDQISFD 222
+++Q S D
Sbjct: 183 AHVIEQESVD 192
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 99/147 (67%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NY+S
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVS 142
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSK 142
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 98/147 (66%), Gaps = 11/147 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYIS 196
DAQ ALRR ME Y++ TRF + NYIS
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYIS 142
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 157 bits (396), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 101/150 (67%), Gaps = 11/150 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V +E+++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+K LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -NTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISR 197
T DAQNALRRTME YS + RF CNY S+
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSK 142
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220
LDEADSMT AQ ALRRTME YS TRF F CN S L S + L D+
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ-SNKIIEPLQSRCAILRYSKLSDEDV 171
Query: 221 FDKEYIRIIYASTLKF 236
K ++II +K+
Sbjct: 172 L-KRLLQIIKLEDVKY 186
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc4 PE=1 SV=1
Length = 342
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 92/144 (63%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L + N PH++ G PG GKTT+ L +AH L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 82 A-YKEGVLELNASDERGIDVVRNRIKAFA-------QKKVILPPGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YS TRF CN
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACN 157
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSK 159
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQNALRR +E Y+K TRF + NY + T AL S F F L Q + ++ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSRCTRFR-FQPLPQEAIERRIANVL 182
Query: 230 YASTLKF 236
LK
Sbjct: 183 VHEKLKL 189
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR 197
DAQNALRR +E +++ TRF ICNY+S+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSK 160
>sp|Q05B83|RFC2_BOVIN Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1
Length = 352
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACN 170
>sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2
SV=1
Length = 349
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1
Length = 359
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 96/144 (66%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 102 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 153
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 154 GAQQALRRTMEIYSKTTRFALACN 177
>sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1
Length = 349
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACN 167
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 103/154 (66%), Gaps = 11/154 (7%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRP++++DV +++ R L + +++ N PH+LF GPPG GKT A+A+A
Sbjct: 1 MAEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDE 163
+L+G E + S +ELNASD+RGI+VVR IK FA A +G + +KII LDE
Sbjct: 61 ELYG-ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK---------FKIIFLDE 110
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
AD++T DAQ+ALRRTME Y+ RF CNY S+
Sbjct: 111 ADALTSDAQSALRRTMERYAATCRFIISCNYSSK 144
>sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3
Length = 354
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K +LELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 97 AL-KDAMLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 148
Query: 170 DAQNALRRTMETYSKVTRFFFICN 193
AQ ALRRTME YSK TRF CN
Sbjct: 149 GAQQALRRTMEIYSKTTRFALACN 172
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 114/200 (57%), Gaps = 14/200 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRI 228
DAQ+ALRRTME +S RF CNY S+ + S F F L D E IR
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQI-IDPIQSRCAVFRFSPLADDAV--AEEIRT 180
Query: 229 IYASTLKFLEGFGL-SLTYS 247
I A L GL +L Y+
Sbjct: 181 IAAEEDIELTEDGLDALVYA 200
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 11/168 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT ++++IA +L+G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEAD++T+D
Sbjct: 72 -WQDNFLELNASDERGIDVVRDRIKDFA---------RSSFGGHNYRVIFLDEADALTDD 121
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ+ALRRTME +S TRF CNY S+ + S F F L D
Sbjct: 122 AQSALRRTMEQFSNNTRFILSCNYSSKI-IDPIQSRCAVFRFAQLGDD 168
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 11/168 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT ++++IA +L+G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEAD++T+D
Sbjct: 72 -WQDNFLELNASDERGIDVVRDRIKDFA---------RSSFGGHNYRVIFLDEADALTDD 121
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218
AQ+ALRRTME +S TRF CNY S+ + S F F L D
Sbjct: 122 AQSALRRTMEQFSNNTRFILSCNYSSKI-IDPIQSRCAVFRFAQLGDD 168
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 107/179 (59%), Gaps = 13/179 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ E + L + + PH+LF GP G GKTT A AIA +++G +
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK+FA + GGY ++II LDEAD++T D
Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASF------GGY---DHRIIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229
AQ+ALRRTME +S TRF CNY S+ + S F F L D E IRII
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSQI-IDPIQSRCAVFRFSPLGDAAV--DEQIRII 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,617,642
Number of Sequences: 539616
Number of extensions: 3567192
Number of successful extensions: 19201
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 449
Number of HSP's that attempted gapping in prelim test: 17334
Number of HSP's gapped (non-prelim): 1901
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)