Query 025762
Match_columns 248
No_of_seqs 203 out of 2125
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0989 Replication factor C, 100.0 1.2E-35 2.5E-40 229.4 13.6 193 48-246 23-215 (346)
2 KOG0991 Replication factor C, 100.0 3.6E-31 7.8E-36 197.3 11.9 187 46-245 12-198 (333)
3 PLN03025 replication factor C 100.0 1.1E-30 2.5E-35 213.3 15.7 185 49-246 1-185 (319)
4 PRK14956 DNA polymerase III su 100.0 6.6E-30 1.4E-34 213.4 16.4 186 46-246 3-207 (484)
5 PRK07003 DNA polymerase III su 100.0 1.8E-29 3.8E-34 218.4 16.9 183 48-245 3-204 (830)
6 PRK12323 DNA polymerase III su 100.0 2E-29 4.4E-34 215.4 15.4 183 48-245 3-209 (700)
7 PRK14958 DNA polymerase III su 100.0 1E-28 2.3E-33 211.1 16.0 185 47-246 2-205 (509)
8 PRK14949 DNA polymerase III su 100.0 2.7E-28 5.8E-33 214.7 16.7 183 48-245 3-204 (944)
9 PRK07994 DNA polymerase III su 100.0 3.8E-28 8.2E-33 210.5 17.1 182 48-244 3-203 (647)
10 PRK14960 DNA polymerase III su 100.0 5E-28 1.1E-32 207.4 15.8 184 48-246 2-204 (702)
11 PRK14964 DNA polymerase III su 100.0 8E-28 1.7E-32 203.0 16.1 182 50-246 2-202 (491)
12 PRK14952 DNA polymerase III su 100.0 1.7E-27 3.6E-32 205.4 17.4 182 50-246 2-204 (584)
13 PRK14957 DNA polymerase III su 100.0 1.6E-27 3.5E-32 203.8 16.5 184 48-246 3-205 (546)
14 PRK14951 DNA polymerase III su 100.0 9.7E-28 2.1E-32 207.6 15.2 184 48-246 3-210 (618)
15 PRK07764 DNA polymerase III su 100.0 2.2E-27 4.8E-32 211.8 15.8 182 50-246 4-206 (824)
16 PRK08451 DNA polymerase III su 100.0 6.3E-27 1.4E-31 199.2 17.4 183 49-246 2-203 (535)
17 PRK14961 DNA polymerase III su 99.9 5.4E-27 1.2E-31 194.5 16.2 183 48-245 3-204 (363)
18 PRK06645 DNA polymerase III su 99.9 6.7E-27 1.5E-31 198.9 16.7 186 46-246 6-214 (507)
19 PRK08691 DNA polymerase III su 99.9 5.4E-27 1.2E-31 202.7 16.2 184 48-246 3-205 (709)
20 COG2812 DnaX DNA polymerase II 99.9 5.4E-28 1.2E-32 203.3 9.5 184 48-246 3-205 (515)
21 PRK05896 DNA polymerase III su 99.9 1.5E-26 3.2E-31 198.1 16.2 183 48-245 3-204 (605)
22 PRK14969 DNA polymerase III su 99.9 1.4E-26 3E-31 199.3 16.1 183 48-245 3-204 (527)
23 PRK14962 DNA polymerase III su 99.9 1.7E-26 3.8E-31 195.6 15.8 182 50-246 3-203 (472)
24 PRK14965 DNA polymerase III su 99.9 1.6E-26 3.4E-31 201.1 15.7 184 48-246 3-205 (576)
25 PRK07133 DNA polymerase III su 99.9 2.2E-26 4.8E-31 200.6 16.4 185 46-245 3-203 (725)
26 PRK14959 DNA polymerase III su 99.9 2.7E-26 5.8E-31 197.5 16.3 184 47-245 2-204 (624)
27 PRK09111 DNA polymerase III su 99.9 2.4E-26 5.3E-31 199.2 16.0 185 46-245 9-217 (598)
28 COG2256 MGS1 ATPase related to 99.9 3.4E-26 7.5E-31 183.3 15.3 163 49-235 12-179 (436)
29 PRK05563 DNA polymerase III su 99.9 4.1E-26 8.8E-31 197.7 17.0 183 48-245 3-204 (559)
30 PF05496 RuvB_N: Holliday junc 99.9 1.4E-26 3.1E-31 174.1 11.9 169 48-243 11-203 (233)
31 PRK14963 DNA polymerase III su 99.9 6.5E-26 1.4E-30 193.6 16.2 181 51-246 4-202 (504)
32 PRK14953 DNA polymerase III su 99.9 3.8E-25 8.2E-30 188.3 16.5 184 48-246 3-205 (486)
33 PRK14955 DNA polymerase III su 99.9 2.5E-25 5.5E-30 186.5 14.9 184 48-246 3-213 (397)
34 PRK14971 DNA polymerase III su 99.9 3.8E-25 8.2E-30 193.0 16.2 185 47-246 3-207 (614)
35 PRK14954 DNA polymerase III su 99.9 4.7E-25 1E-29 191.5 16.6 184 48-246 3-213 (620)
36 PRK06305 DNA polymerase III su 99.9 5.5E-25 1.2E-29 186.3 16.2 183 48-245 4-206 (451)
37 PRK06647 DNA polymerase III su 99.9 5.5E-25 1.2E-29 190.0 16.4 184 48-246 3-205 (563)
38 PRK14948 DNA polymerase III su 99.9 7.1E-25 1.5E-29 191.3 17.0 183 47-244 2-205 (620)
39 PRK00440 rfc replication facto 99.9 1.6E-24 3.5E-29 177.8 17.8 186 47-246 3-188 (319)
40 TIGR02397 dnaX_nterm DNA polym 99.9 1.5E-24 3.2E-29 180.5 15.9 182 49-245 2-202 (355)
41 PRK12402 replication factor C 99.9 4.4E-24 9.6E-29 176.5 15.8 186 50-246 4-211 (337)
42 PRK04195 replication factor C 99.9 2.2E-24 4.8E-29 185.3 14.4 177 49-246 2-187 (482)
43 PHA02544 44 clamp loader, smal 99.9 8.3E-24 1.8E-28 173.3 16.7 185 44-245 4-193 (316)
44 PRK14970 DNA polymerase III su 99.9 1.2E-23 2.5E-28 175.6 16.8 185 47-246 3-194 (367)
45 PRK14950 DNA polymerase III su 99.9 1.3E-23 2.8E-28 183.8 16.3 183 48-245 3-205 (585)
46 KOG2035 Replication factor C, 99.9 1.4E-23 2.9E-28 160.5 13.8 183 50-242 2-209 (351)
47 KOG0990 Replication factor C, 99.9 4E-24 8.7E-29 166.6 8.1 188 46-242 26-213 (360)
48 COG2255 RuvB Holliday junction 99.9 2.5E-22 5.4E-27 154.4 12.4 166 51-243 16-205 (332)
49 PRK07940 DNA polymerase III su 99.9 6.3E-22 1.4E-26 164.4 15.8 156 59-229 3-186 (394)
50 PF13177 DNA_pol3_delta2: DNA 99.9 1.4E-21 2.9E-26 144.1 15.9 141 65-216 1-162 (162)
51 PRK13342 recombination factor 99.9 3.1E-22 6.7E-27 169.0 13.6 161 50-234 1-166 (413)
52 PRK00080 ruvB Holliday junctio 99.9 7.9E-22 1.7E-26 162.0 14.7 171 49-246 13-207 (328)
53 TIGR02902 spore_lonB ATP-depen 99.9 8.5E-22 1.8E-26 170.3 14.3 193 48-245 52-289 (531)
54 PRK09112 DNA polymerase III su 99.9 8.4E-21 1.8E-25 155.7 17.5 164 55-233 17-214 (351)
55 PRK07471 DNA polymerase III su 99.9 7.2E-21 1.6E-25 156.9 16.3 162 55-231 13-212 (365)
56 PRK13341 recombination factor 99.9 1.4E-21 3E-26 173.0 12.6 177 47-246 14-202 (725)
57 PRK07399 DNA polymerase III su 99.9 8.8E-21 1.9E-25 153.6 16.1 162 59-236 2-199 (314)
58 KOG2028 ATPase related to the 99.9 3.1E-21 6.7E-26 153.1 12.6 170 44-233 121-295 (554)
59 TIGR00635 ruvB Holliday juncti 99.9 6.6E-21 1.4E-25 155.4 13.9 161 58-245 1-185 (305)
60 PRK05564 DNA polymerase III su 99.9 2.5E-20 5.3E-25 152.2 16.2 157 59-230 2-163 (313)
61 COG1223 Predicted ATPase (AAA+ 99.9 1.4E-20 3.1E-25 143.0 12.8 167 54-241 114-306 (368)
62 KOG1969 DNA replication checkp 99.8 2.5E-20 5.3E-25 159.2 14.2 181 49-245 259-494 (877)
63 PRK08058 DNA polymerase III su 99.8 3.4E-20 7.3E-25 151.8 14.4 155 60-229 4-179 (329)
64 COG0470 HolB ATPase involved i 99.8 4.1E-20 8.8E-25 152.1 14.2 152 62-220 2-173 (325)
65 PRK06871 DNA polymerase III su 99.8 1.8E-19 3.9E-24 145.7 16.3 151 66-231 7-178 (325)
66 TIGR02881 spore_V_K stage V sp 99.8 9.1E-20 2E-24 145.1 12.4 169 59-245 4-204 (261)
67 PRK08769 DNA polymerase III su 99.8 3.2E-19 6.8E-24 144.0 15.5 149 66-229 9-182 (319)
68 PRK07993 DNA polymerase III su 99.8 3.5E-19 7.5E-24 145.4 15.3 149 66-229 7-177 (334)
69 PRK05707 DNA polymerase III su 99.8 5.1E-19 1.1E-23 144.0 15.6 136 80-230 19-176 (328)
70 PRK04132 replication factor C 99.8 1.6E-19 3.5E-24 160.8 13.3 146 85-244 567-714 (846)
71 PRK06090 DNA polymerase III su 99.8 8.6E-19 1.9E-23 141.4 15.8 149 66-229 8-177 (319)
72 PRK08084 DNA replication initi 99.8 4.6E-19 1E-23 138.7 11.9 163 59-247 20-195 (235)
73 CHL00181 cbbX CbbX; Provisiona 99.8 8E-19 1.7E-23 140.7 13.3 165 61-243 23-220 (287)
74 TIGR00678 holB DNA polymerase 99.8 1.9E-18 4E-23 131.1 14.6 145 72-231 3-167 (188)
75 COG0466 Lon ATP-dependent Lon 99.8 7.7E-20 1.7E-24 156.3 7.5 196 26-233 280-509 (782)
76 COG1222 RPT1 ATP-dependent 26S 99.8 1.6E-18 3.5E-23 137.5 14.2 156 58-238 148-341 (406)
77 PRK06964 DNA polymerase III su 99.8 2.5E-18 5.4E-23 140.0 15.6 148 67-230 7-202 (342)
78 TIGR02903 spore_lon_C ATP-depe 99.8 2.9E-18 6.2E-23 150.6 16.0 191 48-243 141-377 (615)
79 PRK06526 transposase; Provisio 99.8 5.8E-20 1.3E-24 144.5 4.8 203 1-218 17-237 (254)
80 PRK05917 DNA polymerase III su 99.8 1.8E-17 3.9E-22 131.3 16.9 143 67-220 3-159 (290)
81 PRK06893 DNA replication initi 99.8 2.2E-18 4.8E-23 134.4 10.7 165 57-247 12-189 (229)
82 PRK08727 hypothetical protein; 99.8 5.7E-18 1.2E-22 132.4 12.0 162 59-246 17-189 (233)
83 TIGR02880 cbbX_cfxQ probable R 99.8 1.1E-17 2.4E-22 134.2 12.6 163 62-242 23-218 (284)
84 PRK08181 transposase; Validate 99.7 6.5E-19 1.4E-23 139.2 4.2 179 2-195 25-209 (269)
85 TIGR02639 ClpA ATP-dependent C 99.7 2.8E-17 6E-22 147.8 12.8 183 46-245 167-375 (731)
86 TIGR00763 lon ATP-dependent pr 99.7 1.9E-18 4.1E-23 156.0 5.4 160 62-232 321-505 (775)
87 PRK08699 DNA polymerase III su 99.7 1.7E-16 3.7E-21 129.2 15.8 148 66-229 6-182 (325)
88 KOG2004 Mitochondrial ATP-depe 99.7 6.2E-18 1.3E-22 144.4 7.5 192 29-232 371-596 (906)
89 PRK03992 proteasome-activating 99.7 1.5E-16 3.2E-21 133.2 15.0 160 58-238 128-321 (389)
90 PRK10787 DNA-binding ATP-depen 99.7 3.5E-17 7.5E-22 146.9 11.4 191 29-232 282-506 (784)
91 KOG0733 Nuclear AAA ATPase (VC 99.7 8.4E-17 1.8E-21 135.5 12.8 156 59-239 188-381 (802)
92 PRK07276 DNA polymerase III su 99.7 3E-16 6.4E-21 124.8 15.0 142 65-220 6-167 (290)
93 PRK08903 DnaA regulatory inact 99.7 8.6E-17 1.9E-21 125.7 11.8 160 57-246 14-184 (227)
94 TIGR00602 rad24 checkpoint pro 99.7 4.2E-16 9.1E-21 135.9 16.0 184 46-238 69-293 (637)
95 KOG0730 AAA+-type ATPase [Post 99.7 6.5E-17 1.4E-21 137.3 10.6 163 53-240 426-623 (693)
96 TIGR03345 VI_ClpV1 type VI sec 99.7 1.3E-16 2.7E-21 144.7 13.1 184 46-245 172-380 (852)
97 TIGR01241 FtsH_fam ATP-depende 99.7 2.8E-16 6E-21 135.8 14.2 157 56-237 50-243 (495)
98 TIGR02640 gas_vesic_GvpN gas v 99.7 6.7E-16 1.5E-20 122.8 15.3 152 67-231 8-197 (262)
99 COG0542 clpA ATP-binding subun 99.7 9.2E-17 2E-21 140.9 10.9 156 61-220 491-697 (786)
100 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.6E-16 3.5E-21 124.1 11.2 162 59-246 13-186 (226)
101 CHL00195 ycf46 Ycf46; Provisio 99.7 4.6E-16 1E-20 132.5 14.6 154 58-236 225-409 (489)
102 PRK11034 clpA ATP-dependent Cl 99.7 6.2E-17 1.3E-21 144.3 9.1 151 62-222 459-660 (758)
103 PTZ00454 26S protease regulato 99.7 8.2E-16 1.8E-20 128.3 15.0 158 56-238 140-335 (398)
104 PF00004 AAA: ATPase family as 99.7 6.8E-16 1.5E-20 110.2 11.4 112 85-212 1-130 (132)
105 KOG0733 Nuclear AAA ATPase (VC 99.7 8.4E-16 1.8E-20 129.5 13.4 156 58-238 508-698 (802)
106 PRK13407 bchI magnesium chelat 99.7 8.5E-16 1.8E-20 125.0 13.1 170 56-230 3-214 (334)
107 TIGR03689 pup_AAA proteasome A 99.7 8.8E-16 1.9E-20 130.8 13.5 166 53-233 174-379 (512)
108 TIGR02639 ClpA ATP-dependent C 99.7 1.4E-16 3E-21 143.3 9.0 162 61-233 454-663 (731)
109 PTZ00361 26 proteosome regulat 99.7 6.2E-16 1.3E-20 129.9 12.3 162 52-238 174-373 (438)
110 PRK09183 transposase/IS protei 99.7 2E-17 4.3E-22 130.9 3.2 180 2-195 22-206 (259)
111 PF01078 Mg_chelatase: Magnesi 99.7 7.7E-17 1.7E-21 120.9 5.6 121 59-183 1-134 (206)
112 PRK06620 hypothetical protein; 99.7 1.6E-15 3.5E-20 116.7 12.4 150 59-247 14-175 (214)
113 TIGR01242 26Sp45 26S proteasom 99.7 2.6E-15 5.7E-20 125.1 14.4 160 57-237 118-311 (364)
114 PRK05642 DNA replication initi 99.7 1.1E-15 2.3E-20 119.6 11.1 163 59-247 17-194 (234)
115 CHL00095 clpC Clp protease ATP 99.7 1.3E-15 2.9E-20 138.6 13.2 162 61-233 509-733 (821)
116 PRK07132 DNA polymerase III su 99.7 7.1E-15 1.5E-19 118.0 15.7 149 68-230 3-160 (299)
117 TIGR03345 VI_ClpV1 type VI sec 99.6 4.7E-16 1E-20 141.0 9.2 163 61-227 566-779 (852)
118 cd00009 AAA The AAA+ (ATPases 99.6 6.2E-15 1.3E-19 107.0 13.3 140 65-213 2-150 (151)
119 PRK09087 hypothetical protein; 99.6 1.5E-15 3.2E-20 117.9 10.5 152 59-247 19-181 (226)
120 COG1224 TIP49 DNA helicase TIP 99.6 7.7E-15 1.7E-19 116.6 14.0 85 156-246 292-388 (450)
121 PF00308 Bac_DnaA: Bacterial d 99.6 1.9E-15 4.1E-20 116.9 10.4 169 58-246 5-193 (219)
122 PF06068 TIP49: TIP49 C-termin 99.6 2.8E-15 6E-20 120.7 11.5 85 156-246 279-375 (398)
123 CHL00176 ftsH cell division pr 99.6 4.5E-15 9.7E-20 130.3 13.8 154 58-236 180-370 (638)
124 KOG0734 AAA+-type ATPase conta 99.6 4.6E-15 1E-19 123.4 13.0 155 58-237 301-489 (752)
125 PRK10865 protein disaggregatio 99.6 1.6E-15 3.5E-20 138.0 11.0 181 46-242 163-368 (857)
126 TIGR02928 orc1/cdc6 family rep 99.6 1.8E-14 3.8E-19 120.5 16.1 178 48-233 5-213 (365)
127 TIGR01243 CDC48 AAA family ATP 99.6 6.6E-15 1.4E-19 132.9 14.5 156 57-237 449-640 (733)
128 PRK05818 DNA polymerase III su 99.6 8.1E-15 1.7E-19 113.9 12.8 124 82-215 7-147 (261)
129 COG0714 MoxR-like ATPases [Gen 99.6 1.7E-14 3.6E-19 118.7 14.8 149 62-219 25-193 (329)
130 PLN00020 ribulose bisphosphate 99.6 9.5E-15 2.1E-19 117.9 12.9 136 82-238 148-317 (413)
131 TIGR03346 chaperone_ClpB ATP-d 99.6 4E-15 8.6E-20 135.8 11.2 154 61-221 565-769 (852)
132 TIGR03346 chaperone_ClpB ATP-d 99.6 8.2E-15 1.8E-19 133.8 13.1 185 46-242 158-363 (852)
133 KOG0727 26S proteasome regulat 99.6 8.4E-15 1.8E-19 111.5 10.4 156 59-239 153-346 (408)
134 CHL00081 chlI Mg-protoporyphyr 99.6 2.4E-14 5.2E-19 116.8 13.8 169 57-231 13-231 (350)
135 PRK11034 clpA ATP-dependent Cl 99.6 9.2E-15 2E-19 130.5 12.3 184 48-244 173-378 (758)
136 PF07728 AAA_5: AAA domain (dy 99.6 1.3E-15 2.8E-20 109.9 5.7 114 84-207 1-139 (139)
137 KOG0728 26S proteasome regulat 99.6 2.8E-14 6E-19 108.6 13.0 153 59-236 145-335 (404)
138 PRK10865 protein disaggregatio 99.6 2.1E-14 4.5E-19 130.8 14.5 162 60-232 567-779 (857)
139 TIGR02030 BchI-ChlI magnesium 99.6 2.5E-14 5.4E-19 116.7 13.5 162 59-230 2-217 (337)
140 KOG0738 AAA+-type ATPase [Post 99.6 1.3E-14 2.8E-19 116.5 11.5 143 58-220 209-387 (491)
141 PRK13531 regulatory ATPase Rav 99.6 2.3E-14 4.9E-19 120.4 13.3 157 61-230 20-192 (498)
142 PRK05342 clpX ATP-dependent pr 99.6 8.5E-15 1.9E-19 122.5 10.5 108 62-181 72-213 (412)
143 PTZ00112 origin recognition co 99.6 1.4E-14 3E-19 127.8 11.9 169 61-234 755-951 (1164)
144 KOG1970 Checkpoint RAD17-RFC c 99.6 8.8E-14 1.9E-18 116.3 15.1 186 46-241 67-289 (634)
145 PF03215 Rad17: Rad17 cell cyc 99.6 9.7E-14 2.1E-18 119.1 15.8 179 46-235 4-229 (519)
146 KOG0736 Peroxisome assembly fa 99.6 1.7E-14 3.6E-19 124.6 10.8 146 54-220 665-848 (953)
147 PHA02244 ATPase-like protein 99.6 7.1E-14 1.5E-18 113.6 13.8 135 71-220 110-266 (383)
148 PRK12422 chromosomal replicati 99.6 1E-14 2.2E-19 123.6 9.2 148 83-247 142-299 (445)
149 TIGR01650 PD_CobS cobaltochela 99.6 4.1E-14 9E-19 113.7 12.0 163 56-231 40-232 (327)
150 PRK00411 cdc6 cell division co 99.6 1.2E-13 2.6E-18 116.7 15.2 180 45-233 17-221 (394)
151 KOG0743 AAA+-type ATPase [Post 99.6 3.8E-14 8.3E-19 116.3 11.5 151 57-234 197-385 (457)
152 PRK14086 dnaA chromosomal repl 99.6 3.2E-14 7E-19 122.8 11.4 172 58-247 285-474 (617)
153 PF01695 IstB_IS21: IstB-like 99.6 1.7E-15 3.7E-20 113.2 3.0 118 66-195 31-150 (178)
154 TIGR00382 clpX endopeptidase C 99.6 5.2E-14 1.1E-18 117.3 12.1 109 61-181 77-221 (413)
155 PRK14087 dnaA chromosomal repl 99.6 3.6E-14 7.9E-19 120.6 11.4 175 57-246 111-304 (450)
156 CHL00095 clpC Clp protease ATP 99.6 3.2E-14 6.9E-19 129.6 11.7 180 50-242 168-368 (821)
157 PF00158 Sigma54_activat: Sigm 99.6 2.5E-14 5.4E-19 105.8 9.1 146 63-212 1-167 (168)
158 PF05673 DUF815: Protein of un 99.6 1.4E-13 3.1E-18 105.5 13.3 165 55-242 21-217 (249)
159 TIGR00362 DnaA chromosomal rep 99.5 3.8E-14 8.3E-19 119.9 10.9 173 59-246 108-295 (405)
160 COG0464 SpoVK ATPases of the A 99.5 2E-13 4.4E-18 118.4 15.5 160 57-237 238-428 (494)
161 KOG0731 AAA+-type ATPase conta 99.5 6.2E-14 1.3E-18 122.6 11.8 156 58-238 308-501 (774)
162 TIGR01243 CDC48 AAA family ATP 99.5 1.5E-13 3.2E-18 124.3 14.6 155 57-236 174-363 (733)
163 KOG0652 26S proteasome regulat 99.5 1.5E-13 3.3E-18 105.2 12.3 157 57-238 167-361 (424)
164 PRK00149 dnaA chromosomal repl 99.5 4.9E-14 1.1E-18 120.6 10.8 173 59-246 120-307 (450)
165 PF07726 AAA_3: ATPase family 99.5 1.1E-14 2.3E-19 100.5 5.3 111 84-208 1-130 (131)
166 KOG0737 AAA+-type ATPase [Post 99.5 1.1E-13 2.4E-18 110.7 10.4 162 58-238 89-280 (386)
167 KOG0726 26S proteasome regulat 99.5 6.2E-14 1.3E-18 108.9 8.3 145 55-220 179-361 (440)
168 KOG0742 AAA+-type ATPase [Post 99.5 3.7E-13 8E-18 109.1 13.1 160 59-235 353-535 (630)
169 PRK14088 dnaA chromosomal repl 99.5 1.2E-13 2.5E-18 117.5 10.7 175 58-246 102-290 (440)
170 TIGR00368 Mg chelatase-related 99.5 1.2E-13 2.6E-18 118.3 10.5 157 58-219 189-395 (499)
171 PRK10733 hflB ATP-dependent me 99.5 3.3E-13 7.1E-18 119.7 13.2 156 57-237 148-340 (644)
172 KOG0744 AAA+-type ATPase [Post 99.5 1.9E-13 4.1E-18 107.5 10.1 164 59-232 140-344 (423)
173 TIGR02442 Cob-chelat-sub cobal 99.5 6.5E-13 1.4E-17 117.8 14.7 153 59-217 2-202 (633)
174 KOG0739 AAA+-type ATPase [Post 99.5 4.6E-13 9.9E-18 104.4 11.1 142 58-216 130-300 (439)
175 COG1221 PspF Transcriptional r 99.5 2.9E-13 6.4E-18 111.4 10.6 179 58-239 75-275 (403)
176 PF07724 AAA_2: AAA domain (Cd 99.5 1.2E-13 2.6E-18 102.5 7.6 101 83-195 4-130 (171)
177 TIGR02974 phageshock_pspF psp 99.5 1.3E-12 2.8E-17 107.0 14.0 168 64-236 2-195 (329)
178 TIGR01817 nifA Nif-specific re 99.5 1.9E-12 4.2E-17 113.2 15.7 172 56-232 191-388 (534)
179 KOG0735 AAA+-type ATPase [Post 99.5 1.8E-12 4E-17 111.4 14.8 152 58-234 664-850 (952)
180 smart00350 MCM minichromosome 99.5 7.7E-13 1.7E-17 114.6 12.6 157 60-232 202-400 (509)
181 KOG1942 DNA helicase, TBP-inte 99.5 1.7E-12 3.7E-17 101.0 13.0 84 156-245 297-393 (456)
182 PRK06581 DNA polymerase III su 99.5 2.6E-12 5.7E-17 98.0 13.7 138 72-220 4-153 (263)
183 COG0606 Predicted ATPase with 99.5 4.7E-14 1E-18 116.7 4.5 122 58-183 176-311 (490)
184 PRK15424 propionate catabolism 99.5 2.1E-12 4.5E-17 111.5 14.5 170 58-233 216-417 (538)
185 CHL00206 ycf2 Ycf2; Provisiona 99.4 7.4E-13 1.6E-17 124.5 12.1 78 156-238 1733-1823(2281)
186 COG1484 DnaC DNA replication p 99.4 7.5E-14 1.6E-18 110.1 4.6 150 32-195 56-209 (254)
187 COG1474 CDC6 Cdc6-related prot 99.4 1.3E-12 2.8E-17 108.0 12.0 172 52-233 11-204 (366)
188 PRK11331 5-methylcytosine-spec 99.4 1.4E-12 3E-17 108.9 11.6 148 60-215 174-358 (459)
189 PRK11608 pspF phage shock prot 99.4 4.3E-12 9.3E-17 104.1 14.4 173 59-236 4-202 (326)
190 COG2204 AtoC Response regulato 99.4 3.7E-12 7.9E-17 106.8 13.9 173 59-236 139-337 (464)
191 COG0593 DnaA ATPase involved i 99.4 2.4E-12 5.1E-17 106.4 12.0 170 59-247 85-272 (408)
192 COG3829 RocR Transcriptional r 99.4 4E-12 8.7E-17 106.8 13.1 171 56-233 240-435 (560)
193 PRK12377 putative replication 99.4 7.7E-13 1.7E-17 103.6 8.4 152 53-216 66-236 (248)
194 TIGR02329 propionate_PrpR prop 99.4 5.2E-12 1.1E-16 109.1 14.2 180 58-242 209-415 (526)
195 COG1239 ChlI Mg-chelatase subu 99.4 8.5E-12 1.8E-16 102.1 14.5 159 58-217 14-220 (423)
196 COG0465 HflB ATP-dependent Zn 99.4 2.6E-12 5.7E-17 110.4 12.0 156 58-238 147-339 (596)
197 PTZ00111 DNA replication licen 99.4 3.1E-12 6.7E-17 114.4 12.5 148 61-218 450-647 (915)
198 PRK05022 anaerobic nitric oxid 99.4 1.1E-11 2.3E-16 107.7 14.3 157 59-220 185-367 (509)
199 PRK11388 DNA-binding transcrip 99.4 1.3E-11 2.7E-16 110.4 14.7 166 58-233 322-511 (638)
200 KOG0729 26S proteasome regulat 99.4 6.6E-12 1.4E-16 96.6 10.9 139 59-218 175-351 (435)
201 COG3604 FhlA Transcriptional r 99.4 1E-11 2.3E-16 103.2 12.6 154 59-217 221-398 (550)
202 PRK15429 formate hydrogenlyase 99.4 1.1E-11 2.5E-16 111.4 13.9 174 58-236 373-572 (686)
203 KOG0651 26S proteasome regulat 99.4 6.4E-12 1.4E-16 98.5 10.6 126 59-205 130-290 (388)
204 PRK07952 DNA replication prote 99.4 8.2E-12 1.8E-16 97.6 10.8 154 52-216 63-235 (244)
205 PRK09862 putative ATP-dependen 99.4 4.3E-12 9.2E-17 108.4 9.7 154 58-216 188-389 (506)
206 KOG0740 AAA+-type ATPase [Post 99.4 5.7E-12 1.2E-16 104.2 10.0 160 55-235 147-336 (428)
207 PRK10820 DNA-binding transcrip 99.3 3E-11 6.5E-16 105.0 14.9 176 57-237 200-401 (520)
208 COG2607 Predicted ATPase (AAA+ 99.3 2.2E-11 4.7E-16 92.3 12.1 168 55-245 54-252 (287)
209 TIGR00390 hslU ATP-dependent p 99.3 5.2E-12 1.1E-16 104.4 8.6 70 154-228 246-342 (441)
210 PRK08116 hypothetical protein; 99.3 1.7E-11 3.6E-16 97.7 10.6 125 83-217 115-251 (268)
211 TIGR02031 BchD-ChlD magnesium 99.3 2.3E-11 4.9E-16 106.9 12.4 139 71-217 5-162 (589)
212 smart00763 AAA_PrkA PrkA AAA d 99.3 2.7E-11 5.8E-16 98.7 11.5 83 148-235 229-330 (361)
213 COG0542 clpA ATP-binding subun 99.3 2.4E-11 5.2E-16 107.3 12.0 183 49-244 158-362 (786)
214 COG1219 ClpX ATP-dependent pro 99.3 2.4E-12 5.2E-17 101.2 4.2 108 61-181 61-202 (408)
215 KOG2680 DNA helicase TIP49, TB 99.3 2.3E-11 5E-16 95.1 9.3 85 156-246 289-385 (454)
216 PRK08939 primosomal protein Dn 99.3 1.2E-11 2.7E-16 100.0 7.9 130 55-196 121-262 (306)
217 PRK06835 DNA replication prote 99.3 2.9E-11 6.2E-16 98.7 10.0 121 82-213 183-315 (329)
218 PRK05201 hslU ATP-dependent pr 99.3 4.5E-11 9.7E-16 98.9 11.1 69 155-228 249-344 (443)
219 PRK06921 hypothetical protein; 99.3 7E-11 1.5E-15 94.0 11.2 102 81-195 116-225 (266)
220 TIGR00764 lon_rel lon-related 99.3 8E-11 1.7E-15 103.7 12.5 50 58-109 15-64 (608)
221 PF13173 AAA_14: AAA domain 99.3 5.5E-11 1.2E-15 84.4 9.3 121 82-220 2-127 (128)
222 TIGR03015 pepcterm_ATPase puta 99.2 7.1E-10 1.5E-14 88.9 16.3 178 49-236 11-209 (269)
223 KOG2170 ATPase of the AAA+ sup 99.2 1.4E-10 3.1E-15 90.7 11.6 168 62-242 83-310 (344)
224 KOG1968 Replication factor C, 99.2 2.3E-11 5E-16 109.5 8.0 184 49-244 308-514 (871)
225 PRK13765 ATP-dependent proteas 99.2 1.9E-10 4.1E-15 101.2 13.4 53 55-109 25-77 (637)
226 TIGR02915 PEP_resp_reg putativ 99.2 4E-10 8.7E-15 96.8 14.7 154 59-217 137-314 (445)
227 PF14532 Sigma54_activ_2: Sigm 99.2 4.5E-11 9.7E-16 86.0 7.0 124 65-214 2-137 (138)
228 KOG1051 Chaperone HSP104 and r 99.2 2.1E-10 4.5E-15 102.8 11.8 127 61-193 562-709 (898)
229 smart00382 AAA ATPases associa 99.2 7.2E-10 1.6E-14 79.5 12.6 99 82-194 2-125 (148)
230 PRK10923 glnG nitrogen regulat 99.2 8.1E-10 1.8E-14 95.5 14.5 154 59-217 136-313 (469)
231 PF01637 Arch_ATPase: Archaeal 99.2 2.6E-10 5.7E-15 89.2 10.0 165 63-235 1-207 (234)
232 KOG0478 DNA replication licens 99.1 1.4E-10 3E-15 99.6 8.2 143 62-217 430-615 (804)
233 KOG0730 AAA+-type ATPase [Post 99.1 3.2E-10 6.8E-15 97.3 10.1 134 81-238 217-370 (693)
234 PRK11361 acetoacetate metaboli 99.1 1.6E-09 3.4E-14 93.5 14.4 152 61-217 143-318 (457)
235 KOG0735 AAA+-type ATPase [Post 99.1 4.9E-10 1.1E-14 96.8 10.1 141 81-236 430-590 (952)
236 KOG1514 Origin recognition com 99.1 6.3E-10 1.4E-14 96.0 10.3 169 63-231 398-592 (767)
237 COG1241 MCM2 Predicted ATPase 99.1 1.8E-10 3.9E-15 100.9 6.9 141 60-213 285-466 (682)
238 PF12774 AAA_6: Hydrolytic ATP 99.1 5.8E-09 1.3E-13 81.0 14.0 129 68-220 20-172 (231)
239 KOG2227 Pre-initiation complex 99.1 7.4E-10 1.6E-14 91.6 9.0 170 61-236 150-342 (529)
240 KOG0732 AAA+-type ATPase conta 99.1 1.6E-09 3.6E-14 98.0 11.3 151 59-229 263-448 (1080)
241 TIGR02688 conserved hypothetic 99.0 5.1E-09 1.1E-13 86.8 13.1 106 66-194 192-312 (449)
242 PF00931 NB-ARC: NB-ARC domain 99.0 1.1E-09 2.3E-14 88.7 9.0 161 67-236 2-174 (287)
243 PF12775 AAA_7: P-loop contain 99.0 1.8E-09 4E-14 86.1 9.9 148 82-236 33-201 (272)
244 COG3283 TyrR Transcriptional r 99.0 5.8E-09 1.3E-13 83.8 12.5 173 58-238 201-397 (511)
245 PF05621 TniB: Bacterial TniB 99.0 5.8E-09 1.2E-13 82.9 12.5 161 59-220 35-218 (302)
246 PRK15115 response regulator Gl 99.0 8.5E-09 1.8E-13 88.6 14.6 151 62-217 135-309 (444)
247 KOG0745 Putative ATP-dependent 99.0 3.6E-10 7.8E-15 92.5 5.6 88 82-181 226-331 (564)
248 PF13401 AAA_22: AAA domain; P 99.0 9.5E-11 2.1E-15 83.5 2.0 111 82-194 4-125 (131)
249 PF05729 NACHT: NACHT domain 99.0 2E-09 4.3E-14 79.7 9.1 146 84-233 2-164 (166)
250 KOG0741 AAA+-type ATPase [Post 99.0 5.2E-10 1.1E-14 93.7 6.4 130 84-220 258-406 (744)
251 COG1618 Predicted nucleotide k 99.0 1.8E-08 4E-13 72.0 12.7 26 84-109 7-32 (179)
252 PHA00729 NTP-binding motif con 99.0 3.2E-09 7E-14 81.4 9.5 35 72-106 7-41 (226)
253 PRK08485 DNA polymerase III su 99.0 4.1E-09 8.9E-14 78.4 9.5 103 121-242 33-148 (206)
254 TIGR01818 ntrC nitrogen regula 99.0 1.6E-08 3.4E-13 87.4 13.8 168 62-234 135-328 (463)
255 PRK13406 bchD magnesium chelat 99.0 6.4E-09 1.4E-13 91.0 11.2 147 66-220 8-174 (584)
256 COG1220 HslU ATP-dependent pro 98.9 4.7E-09 1E-13 83.6 8.3 49 62-110 16-78 (444)
257 PF03266 NTPase_1: NTPase; In 98.9 2.8E-09 6E-14 78.9 5.9 62 155-220 95-163 (168)
258 KOG0477 DNA replication licens 98.9 2.5E-09 5.4E-14 91.2 6.0 140 62-213 450-629 (854)
259 PF00493 MCM: MCM2/3/5 family 98.9 6.1E-11 1.3E-15 97.4 -3.7 137 62-210 25-201 (331)
260 COG4650 RtcR Sigma54-dependent 98.9 7.8E-09 1.7E-13 81.2 7.8 100 83-182 209-309 (531)
261 PF13191 AAA_16: AAA ATPase do 98.9 6.7E-09 1.5E-13 78.3 6.6 46 63-108 2-50 (185)
262 PRK10365 transcriptional regul 98.8 1.1E-07 2.5E-12 81.6 14.6 150 63-217 141-314 (441)
263 PRK10536 hypothetical protein; 98.8 6.5E-08 1.4E-12 75.5 11.5 47 58-106 52-98 (262)
264 KOG0480 DNA replication licens 98.8 8E-09 1.7E-13 88.4 6.6 160 59-234 343-544 (764)
265 KOG0736 Peroxisome assembly fa 98.8 4.2E-08 9.2E-13 85.8 10.2 134 83-238 432-582 (953)
266 PF13604 AAA_30: AAA domain; P 98.8 3E-08 6.4E-13 75.6 7.9 119 69-194 6-130 (196)
267 COG3267 ExeA Type II secretory 98.8 1.7E-07 3.7E-12 72.2 11.6 181 46-235 16-216 (269)
268 PF00910 RNA_helicase: RNA hel 98.8 1.9E-08 4.2E-13 68.9 5.6 74 85-182 1-80 (107)
269 KOG0482 DNA replication licens 98.7 2.4E-08 5.1E-13 83.5 6.7 144 50-209 331-518 (721)
270 cd00561 CobA_CobO_BtuR ATP:cor 98.7 5.5E-08 1.2E-12 70.8 7.5 120 84-208 4-147 (159)
271 COG3284 AcoR Transcriptional a 98.7 1.1E-07 2.3E-12 81.9 9.9 144 84-236 338-503 (606)
272 KOG0741 AAA+-type ATPase [Post 98.7 2.1E-07 4.6E-12 78.5 10.7 96 83-195 539-650 (744)
273 COG5271 MDN1 AAA ATPase contai 98.7 7E-08 1.5E-12 90.6 8.2 156 62-232 866-1047(4600)
274 KOG0481 DNA replication licens 98.7 9E-08 2E-12 80.3 8.1 148 62-220 332-518 (729)
275 COG5271 MDN1 AAA ATPase contai 98.6 1.5E-07 3.2E-12 88.5 8.9 143 71-229 1534-1700(4600)
276 PHA02774 E1; Provisional 98.6 2.6E-07 5.6E-12 79.6 9.6 141 70-238 421-587 (613)
277 PLN03210 Resistant to P. syrin 98.6 1.2E-06 2.6E-11 83.6 14.5 166 57-233 180-365 (1153)
278 PRK10875 recD exonuclease V su 98.6 5.1E-07 1.1E-11 79.7 11.0 109 83-194 168-301 (615)
279 PHA02624 large T antigen; Prov 98.6 7.1E-07 1.5E-11 77.3 11.2 105 82-214 431-561 (647)
280 PF03969 AFG1_ATPase: AFG1-lik 98.6 1.9E-07 4.2E-12 77.3 7.3 125 81-215 61-201 (362)
281 KOG0479 DNA replication licens 98.6 3.6E-07 7.8E-12 77.8 8.8 131 62-209 302-477 (818)
282 PF04665 Pox_A32: Poxvirus A32 98.5 3.9E-06 8.5E-11 65.3 12.3 132 84-220 15-162 (241)
283 PF02562 PhoH: PhoH-like prote 98.5 5.2E-07 1.1E-11 68.5 7.3 36 156-194 120-155 (205)
284 TIGR01447 recD exodeoxyribonuc 98.5 1.8E-06 3.8E-11 76.1 11.3 107 83-193 161-294 (586)
285 PRK05986 cob(I)alamin adenolsy 98.5 7E-07 1.5E-11 66.8 7.4 122 82-208 22-167 (191)
286 PF12780 AAA_8: P-loop contain 98.5 1.2E-05 2.6E-10 64.0 14.9 151 64-234 11-212 (268)
287 PRK12723 flagellar biosynthesi 98.5 3.4E-06 7.3E-11 70.5 12.1 151 82-238 174-341 (388)
288 PRK14722 flhF flagellar biosyn 98.5 1.9E-06 4.1E-11 71.5 10.3 27 81-107 136-162 (374)
289 KOG2228 Origin recognition com 98.5 3.3E-06 7.2E-11 67.7 11.2 160 67-232 34-219 (408)
290 PF06309 Torsin: Torsin; Inte 98.5 1.6E-06 3.5E-11 60.1 8.3 54 61-114 25-85 (127)
291 PF04851 ResIII: Type III rest 98.4 2.1E-06 4.6E-11 64.4 9.8 43 64-106 6-49 (184)
292 PF00448 SRP54: SRP54-type pro 98.4 8.7E-07 1.9E-11 67.4 7.1 149 84-238 3-169 (196)
293 PRK05703 flhF flagellar biosyn 98.4 3.3E-06 7.1E-11 71.7 11.2 151 82-238 221-386 (424)
294 TIGR01448 recD_rel helicase, p 98.4 4.2E-06 9.1E-11 75.8 12.3 120 66-193 325-451 (720)
295 PRK04296 thymidine kinase; Pro 98.4 4.7E-06 1E-10 63.2 10.8 93 84-193 4-114 (190)
296 PRK13695 putative NTPase; Prov 98.4 4.8E-06 1E-10 62.2 10.7 62 155-220 96-164 (174)
297 COG1419 FlhF Flagellar GTP-bin 98.4 1E-05 2.2E-10 66.9 13.2 148 82-238 203-367 (407)
298 cd00046 DEXDc DEAD-like helica 98.4 1.6E-06 3.4E-11 61.8 7.6 25 84-108 2-26 (144)
299 TIGR00708 cobA cob(I)alamin ad 98.4 1.2E-05 2.6E-10 59.3 12.0 117 84-208 7-149 (173)
300 PRK15455 PrkA family serine pr 98.4 4.5E-07 9.8E-12 78.2 5.1 93 14-106 16-127 (644)
301 PRK04841 transcriptional regul 98.4 1.8E-05 3.9E-10 74.1 16.1 162 56-229 9-196 (903)
302 cd01120 RecA-like_NTPases RecA 98.4 5E-06 1.1E-10 61.1 10.0 23 85-107 2-24 (165)
303 PF05970 PIF1: PIF1-like helic 98.4 1.5E-06 3.3E-11 72.6 7.6 112 66-180 6-127 (364)
304 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.3 4.1E-06 9E-11 60.5 8.8 97 81-195 25-127 (144)
305 TIGR02768 TraA_Ti Ti-type conj 98.3 3.9E-06 8.5E-11 76.2 10.6 118 66-193 354-475 (744)
306 PF09848 DUF2075: Uncharacteri 98.3 3.1E-06 6.7E-11 70.5 9.0 23 84-106 3-25 (352)
307 PRK12727 flagellar biosynthesi 98.3 8.4E-06 1.8E-10 70.1 11.3 152 81-238 349-513 (559)
308 COG4088 Predicted nucleotide k 98.3 8.7E-07 1.9E-11 66.2 4.7 25 84-108 3-27 (261)
309 PRK14974 cell division protein 98.3 8.2E-06 1.8E-10 67.0 10.7 149 82-238 140-308 (336)
310 KOG2543 Origin recognition com 98.3 2.2E-05 4.8E-10 64.1 12.7 151 62-229 7-190 (438)
311 PRK11889 flhF flagellar biosyn 98.3 1.1E-05 2.3E-10 67.0 10.9 150 82-238 241-406 (436)
312 PRK04132 replication factor C 98.3 7.8E-07 1.7E-11 80.7 4.4 51 48-98 6-56 (846)
313 cd03216 ABC_Carb_Monos_I This 98.3 8.6E-06 1.9E-10 60.2 9.1 101 80-195 24-142 (163)
314 COG1373 Predicted ATPase (AAA+ 98.3 3.6E-05 7.9E-10 65.0 13.8 129 70-220 26-159 (398)
315 KOG4658 Apoptotic ATPase [Sign 98.3 6.2E-06 1.4E-10 75.9 9.7 153 64-220 161-322 (889)
316 KOG3347 Predicted nucleotide k 98.2 5.1E-07 1.1E-11 63.8 2.1 26 81-106 6-31 (176)
317 cd03247 ABCC_cytochrome_bd The 98.2 3.3E-05 7.1E-10 58.0 11.4 42 155-196 116-158 (178)
318 cd03222 ABC_RNaseL_inhibitor T 98.2 1.6E-05 3.4E-10 59.5 9.4 103 80-194 23-131 (177)
319 PF13207 AAA_17: AAA domain; P 98.2 1.9E-06 4.1E-11 60.3 4.2 22 85-106 2-23 (121)
320 PRK13889 conjugal transfer rel 98.2 1.6E-05 3.5E-10 73.6 10.8 117 67-193 349-469 (988)
321 cd03228 ABCC_MRP_Like The MRP 98.2 4.3E-05 9.3E-10 56.9 11.3 42 155-196 114-156 (171)
322 PF05272 VirE: Virulence-assoc 98.2 3.3E-06 7.2E-11 64.2 5.1 101 84-214 54-169 (198)
323 PRK13900 type IV secretion sys 98.2 4.4E-05 9.5E-10 62.8 11.9 36 69-106 149-184 (332)
324 COG3854 SpoIIIAA ncharacterize 98.2 4.1E-05 8.8E-10 58.5 10.6 49 73-121 128-178 (308)
325 PRK14532 adenylate kinase; Pro 98.1 6.8E-05 1.5E-09 56.8 11.8 23 84-106 2-24 (188)
326 PRK12724 flagellar biosynthesi 98.1 1.5E-05 3.2E-10 66.9 8.7 147 83-238 224-388 (432)
327 cd03246 ABCC_Protease_Secretio 98.1 6.9E-05 1.5E-09 55.9 11.6 41 155-195 114-156 (173)
328 COG2884 FtsE Predicted ATPase 98.1 1.1E-05 2.4E-10 59.7 6.9 56 155-211 155-211 (223)
329 cd03230 ABC_DR_subfamily_A Thi 98.1 3E-05 6.4E-10 57.9 9.5 41 155-195 113-155 (173)
330 PRK00771 signal recognition pa 98.1 3.3E-05 7.2E-10 65.7 10.7 27 82-108 95-121 (437)
331 TIGR01359 UMP_CMP_kin_fam UMP- 98.1 2.2E-05 4.9E-10 59.1 8.6 22 85-106 2-23 (183)
332 TIGR02858 spore_III_AA stage I 98.1 4.3E-05 9.2E-10 61.0 10.3 29 79-107 108-136 (270)
333 cd00267 ABC_ATPase ABC (ATP-bi 98.1 5.3E-05 1.2E-09 55.6 10.2 100 81-195 24-140 (157)
334 PRK14528 adenylate kinase; Pro 98.1 5.9E-05 1.3E-09 57.0 10.6 24 83-106 2-25 (186)
335 COG1485 Predicted ATPase [Gene 98.1 7.9E-06 1.7E-10 66.1 6.1 127 81-215 64-204 (367)
336 PTZ00202 tuzin; Provisional 98.1 3.8E-05 8.3E-10 64.5 10.2 51 56-106 257-310 (550)
337 TIGR02782 TrbB_P P-type conjug 98.1 0.0001 2.2E-09 59.9 12.3 38 67-106 119-156 (299)
338 PF07693 KAP_NTPase: KAP famil 98.1 0.00041 8.8E-09 57.2 16.2 66 155-220 172-255 (325)
339 PF13671 AAA_33: AAA domain; P 98.1 1.7E-05 3.6E-10 57.2 7.0 22 85-106 2-23 (143)
340 TIGR01618 phage_P_loop phage n 98.1 8.1E-06 1.7E-10 62.9 5.5 23 82-104 12-34 (220)
341 PRK05800 cobU adenosylcobinami 98.1 4.1E-05 8.9E-10 56.9 9.1 23 84-106 3-25 (170)
342 smart00487 DEXDc DEAD-like hel 98.1 3.4E-05 7.4E-10 58.2 9.0 41 155-195 129-171 (201)
343 PRK12726 flagellar biosynthesi 98.1 4.3E-05 9.2E-10 63.3 9.9 151 81-238 205-371 (407)
344 PRK08118 topology modulation p 98.0 5.4E-06 1.2E-10 61.5 4.1 25 83-107 2-26 (167)
345 PRK13826 Dtr system oriT relax 98.0 4.8E-05 1E-09 71.1 11.0 104 82-193 397-504 (1102)
346 cd03214 ABC_Iron-Siderophores_ 98.0 3.6E-05 7.9E-10 57.8 8.6 112 81-196 24-159 (180)
347 PRK06067 flagellar accessory p 98.0 1.6E-05 3.5E-10 62.4 6.8 26 81-106 24-49 (234)
348 cd03229 ABC_Class3 This class 98.0 5.2E-05 1.1E-09 56.9 9.3 40 155-194 118-160 (178)
349 cd03223 ABCD_peroxisomal_ALDP 98.0 0.00014 2.9E-09 54.0 11.2 113 81-195 26-148 (166)
350 PF13245 AAA_19: Part of AAA d 98.0 9.8E-06 2.1E-10 51.6 4.4 24 83-106 11-34 (76)
351 PRK09376 rho transcription ter 98.0 5E-06 1.1E-10 68.8 3.6 30 79-108 166-195 (416)
352 PF00270 DEAD: DEAD/DEAH box h 98.0 4.2E-05 9.2E-10 56.6 7.9 24 82-105 14-37 (169)
353 COG0563 Adk Adenylate kinase a 98.0 0.00028 6E-09 52.8 12.1 23 84-106 2-24 (178)
354 cd01124 KaiC KaiC is a circadi 98.0 4.3E-05 9.2E-10 57.7 8.0 23 85-107 2-24 (187)
355 cd01129 PulE-GspE PulE/GspE Th 98.0 0.00024 5.2E-09 56.7 12.5 47 59-106 58-104 (264)
356 TIGR00767 rho transcription te 98.0 1E-05 2.2E-10 67.3 4.8 31 78-108 164-194 (415)
357 cd01131 PilT Pilus retraction 98.0 9.4E-05 2E-09 56.5 9.8 24 84-107 3-26 (198)
358 cd03238 ABC_UvrA The excision 98.0 0.00011 2.4E-09 54.9 9.8 40 156-195 108-149 (176)
359 PF00437 T2SE: Type II/IV secr 98.0 6.4E-05 1.4E-09 60.3 9.2 49 59-107 102-152 (270)
360 KOG1808 AAA ATPase containing 98.0 8.7E-06 1.9E-10 78.5 4.7 147 64-220 420-591 (1856)
361 PF10443 RNA12: RNA12 protein; 98.0 8.2E-05 1.8E-09 62.2 9.8 73 156-234 149-231 (431)
362 PRK14531 adenylate kinase; Pro 98.0 0.00018 3.9E-09 54.2 11.0 24 83-106 3-26 (183)
363 cd01130 VirB11-like_ATPase Typ 97.9 0.00022 4.8E-09 53.9 11.4 38 67-106 12-49 (186)
364 PF01443 Viral_helicase1: Vira 97.9 1.7E-05 3.7E-10 62.1 5.5 22 85-106 1-22 (234)
365 cd03213 ABCG_EPDR ABCG transpo 97.9 0.00014 3.1E-09 55.3 10.4 116 80-195 33-171 (194)
366 TIGR03499 FlhF flagellar biosy 97.9 2.9E-05 6.2E-10 62.6 6.7 39 82-120 194-233 (282)
367 COG1124 DppF ABC-type dipeptid 97.9 2.3E-05 5.1E-10 60.3 5.8 53 154-208 158-213 (252)
368 TIGR03574 selen_PSTK L-seryl-t 97.9 7.7E-05 1.7E-09 59.1 8.9 23 85-107 2-24 (249)
369 PRK13894 conjugal transfer ATP 97.9 0.00025 5.4E-09 58.1 11.9 38 67-106 135-172 (319)
370 PF08433 KTI12: Chromatin asso 97.9 0.00018 3.8E-09 57.5 10.8 94 84-192 3-106 (270)
371 COG2804 PulE Type II secretory 97.9 0.00032 7E-09 59.7 12.8 51 59-110 236-286 (500)
372 PRK13808 adenylate kinase; Pro 97.9 0.00025 5.5E-09 58.0 11.7 23 84-106 2-24 (333)
373 cd03215 ABC_Carb_Monos_II This 97.9 1.9E-05 4.2E-10 59.4 5.0 40 155-194 122-163 (182)
374 cd02021 GntK Gluconate kinase 97.9 0.00011 2.5E-09 53.3 8.9 22 85-106 2-23 (150)
375 cd03115 SRP The signal recogni 97.9 7.5E-05 1.6E-09 55.7 8.0 25 84-108 2-26 (173)
376 PF13086 AAA_11: AAA domain; P 97.9 1.6E-05 3.4E-10 62.1 4.5 38 67-106 4-41 (236)
377 KOG0066 eIF2-interacting prote 97.9 0.00016 3.5E-09 60.4 10.3 169 44-220 571-782 (807)
378 TIGR00643 recG ATP-dependent D 97.9 0.0001 2.2E-09 66.2 10.1 38 65-102 239-276 (630)
379 TIGR00150 HI0065_YjeE ATPase, 97.9 4.2E-05 9E-10 54.1 6.0 28 81-108 21-48 (133)
380 PRK14527 adenylate kinase; Pro 97.9 0.00011 2.5E-09 55.7 8.9 27 81-107 5-31 (191)
381 TIGR01420 pilT_fam pilus retra 97.9 0.00022 4.9E-09 59.2 11.3 26 82-107 122-147 (343)
382 PRK13851 type IV secretion sys 97.9 0.00016 3.6E-09 59.7 10.3 34 71-106 153-186 (344)
383 PRK00131 aroK shikimate kinase 97.9 2.1E-05 4.5E-10 58.6 4.7 26 81-106 3-28 (175)
384 PRK02496 adk adenylate kinase; 97.9 8.6E-05 1.9E-09 56.0 7.9 23 84-106 3-25 (184)
385 PF00406 ADK: Adenylate kinase 97.9 0.00044 9.5E-09 50.3 11.4 20 87-106 1-20 (151)
386 COG1126 GlnQ ABC-type polar am 97.9 0.00017 3.6E-09 54.7 9.0 40 154-193 153-193 (240)
387 COG4178 ABC-type uncharacteriz 97.9 0.00018 4E-09 62.9 10.6 40 154-193 532-572 (604)
388 PRK14712 conjugal transfer nic 97.9 0.00021 4.5E-09 69.2 11.8 123 67-193 838-966 (1623)
389 PF05707 Zot: Zonular occluden 97.8 5.5E-05 1.2E-09 57.5 6.7 53 155-208 79-138 (193)
390 PRK07261 topology modulation p 97.8 2.3E-05 4.9E-10 58.4 4.4 23 84-106 2-24 (171)
391 PF13238 AAA_18: AAA domain; P 97.8 1.5E-05 3.3E-10 56.1 3.4 22 85-106 1-22 (129)
392 PLN02674 adenylate kinase 97.8 0.00026 5.7E-09 55.5 10.5 25 82-106 31-55 (244)
393 PRK06995 flhF flagellar biosyn 97.8 0.00023 5.1E-09 61.1 11.0 148 82-238 256-420 (484)
394 PRK06547 hypothetical protein; 97.8 3.9E-05 8.5E-10 57.1 5.6 34 73-106 6-39 (172)
395 KOG0922 DEAH-box RNA helicase 97.8 0.00012 2.6E-09 63.7 9.2 38 67-106 53-90 (674)
396 cd01428 ADK Adenylate kinase ( 97.8 0.00028 6E-09 53.6 10.5 23 84-106 1-23 (194)
397 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 4.2E-05 9E-10 59.9 5.9 42 154-195 156-199 (254)
398 PRK14721 flhF flagellar biosyn 97.8 0.00018 3.8E-09 60.9 10.0 25 82-106 191-215 (420)
399 PHA02530 pseT polynucleotide k 97.8 0.00055 1.2E-08 55.8 12.8 23 84-106 4-26 (300)
400 TIGR02788 VirB11 P-type DNA tr 97.8 0.00046 1E-08 56.4 12.3 26 81-106 143-168 (308)
401 TIGR00064 ftsY signal recognit 97.8 0.00017 3.6E-09 57.8 9.4 26 82-107 72-97 (272)
402 PRK03839 putative kinase; Prov 97.8 2.2E-05 4.7E-10 59.0 4.2 23 84-106 2-24 (180)
403 PF14516 AAA_35: AAA-like doma 97.8 0.0005 1.1E-08 56.8 12.5 46 63-109 13-58 (331)
404 PRK00625 shikimate kinase; Pro 97.8 2.4E-05 5.1E-10 58.3 4.2 23 84-106 2-24 (173)
405 PRK13709 conjugal transfer nic 97.8 0.00026 5.5E-09 69.3 12.0 120 66-193 969-1098(1747)
406 COG1643 HrpA HrpA-like helicas 97.8 0.0002 4.4E-09 65.3 10.7 38 67-106 52-89 (845)
407 PRK13947 shikimate kinase; Pro 97.8 2.5E-05 5.4E-10 58.1 4.2 24 84-107 3-26 (171)
408 PRK14529 adenylate kinase; Pro 97.8 0.00028 6E-09 54.7 10.1 26 84-109 2-27 (223)
409 PRK08533 flagellar accessory p 97.8 0.00023 5E-09 55.6 9.8 26 81-106 23-48 (230)
410 cd02019 NK Nucleoside/nucleoti 97.8 2.6E-05 5.7E-10 48.7 3.5 22 85-106 2-23 (69)
411 cd01128 rho_factor Transcripti 97.8 0.00025 5.3E-09 56.0 9.6 31 78-108 12-42 (249)
412 PRK12608 transcription termina 97.8 3E-05 6.6E-10 64.0 4.7 31 78-108 129-159 (380)
413 cd03283 ABC_MutS-like MutS-lik 97.8 0.00041 8.9E-09 53.0 10.6 24 83-106 26-49 (199)
414 cd03281 ABC_MSH5_euk MutS5 hom 97.8 0.00042 9.1E-09 53.5 10.7 23 83-105 30-52 (213)
415 KOG1051 Chaperone HSP104 and r 97.8 0.00085 1.8E-08 61.4 13.8 158 60-233 185-364 (898)
416 PRK10416 signal recognition pa 97.8 0.00044 9.6E-09 56.6 11.2 26 82-107 114-139 (318)
417 PRK10867 signal recognition pa 97.8 0.00023 5.1E-09 60.5 9.7 27 83-109 101-127 (433)
418 PRK06731 flhF flagellar biosyn 97.8 0.0004 8.6E-09 55.4 10.4 151 81-238 74-240 (270)
419 KOG0924 mRNA splicing factor A 97.8 0.00029 6.3E-09 61.7 10.1 41 153-193 466-508 (1042)
420 COG1936 Predicted nucleotide k 97.7 3E-05 6.4E-10 56.5 3.5 22 84-106 2-23 (180)
421 PRK06217 hypothetical protein; 97.7 4E-05 8.6E-10 57.8 4.3 25 84-108 3-27 (183)
422 PF13479 AAA_24: AAA domain 97.7 2.5E-05 5.4E-10 60.4 3.2 23 83-105 4-26 (213)
423 cd00464 SK Shikimate kinase (S 97.7 4.1E-05 8.8E-10 55.9 4.1 23 84-106 1-23 (154)
424 cd03269 ABC_putative_ATPase Th 97.7 0.00012 2.7E-09 56.4 6.9 40 155-194 146-187 (210)
425 cd03233 ABC_PDR_domain1 The pl 97.7 0.00038 8.3E-09 53.3 9.6 28 80-107 31-58 (202)
426 PRK14530 adenylate kinase; Pro 97.7 4.6E-05 1E-09 59.0 4.5 25 82-106 3-27 (215)
427 cd03243 ABC_MutS_homologs The 97.7 0.00082 1.8E-08 51.5 11.4 23 83-105 30-52 (202)
428 COG1119 ModF ABC-type molybden 97.7 0.00041 8.8E-09 53.6 9.4 45 155-199 189-237 (257)
429 cd03264 ABC_drug_resistance_li 97.7 0.00025 5.4E-09 54.7 8.6 42 154-195 147-189 (211)
430 COG1125 OpuBA ABC-type proline 97.7 0.00018 4E-09 55.9 7.6 27 81-107 26-52 (309)
431 COG2874 FlaH Predicted ATPases 97.7 0.0008 1.7E-08 51.0 10.7 44 65-110 13-56 (235)
432 PRK00279 adk adenylate kinase; 97.7 0.00026 5.6E-09 54.8 8.6 23 84-106 2-24 (215)
433 cd03237 ABC_RNaseL_inhibitor_d 97.7 0.00021 4.6E-09 56.5 8.2 85 154-244 132-225 (246)
434 PRK06696 uridine kinase; Valid 97.7 7.2E-05 1.6E-09 58.3 5.4 41 67-107 4-47 (223)
435 TIGR02538 type_IV_pilB type IV 97.7 0.0009 1.9E-08 59.3 12.8 47 60-107 295-341 (564)
436 PRK15177 Vi polysaccharide exp 97.7 0.0008 1.7E-08 52.0 11.1 26 81-106 12-37 (213)
437 COG1120 FepC ABC-type cobalami 97.7 0.00014 3E-09 57.2 6.8 27 81-107 27-53 (258)
438 PRK13949 shikimate kinase; Pro 97.7 4.7E-05 1E-09 56.6 4.0 24 83-106 2-25 (169)
439 PRK14723 flhF flagellar biosyn 97.7 0.00041 8.8E-09 62.6 10.5 148 82-238 185-352 (767)
440 PRK10917 ATP-dependent DNA hel 97.7 0.0004 8.7E-09 62.9 10.5 43 64-106 264-306 (681)
441 TIGR01425 SRP54_euk signal rec 97.7 0.00024 5.3E-09 60.1 8.5 26 83-108 101-126 (429)
442 cd00227 CPT Chloramphenicol (C 97.7 4.8E-05 1E-09 56.9 3.9 26 82-107 2-27 (175)
443 cd00544 CobU Adenosylcobinamid 97.7 0.00031 6.7E-09 52.1 8.1 22 85-106 2-23 (169)
444 cd03227 ABC_Class2 ABC-type Cl 97.7 0.00089 1.9E-08 49.4 10.6 25 83-107 22-46 (162)
445 PRK13546 teichoic acids export 97.7 0.0003 6.5E-09 56.2 8.6 26 81-106 49-74 (264)
446 PRK13833 conjugal transfer pro 97.7 9.5E-05 2.1E-09 60.4 5.7 38 67-106 131-168 (323)
447 TIGR00959 ffh signal recogniti 97.7 0.00038 8.1E-09 59.2 9.5 25 83-107 100-124 (428)
448 COG0703 AroK Shikimate kinase 97.7 5E-05 1.1E-09 55.8 3.7 24 83-106 3-26 (172)
449 COG1875 NYN ribonuclease and A 97.7 0.00043 9.3E-09 56.5 9.3 37 155-194 351-387 (436)
450 TIGR02524 dot_icm_DotB Dot/Icm 97.7 0.0007 1.5E-08 56.4 10.9 26 82-107 134-159 (358)
451 TIGR03878 thermo_KaiC_2 KaiC d 97.7 0.00047 1E-08 55.0 9.6 26 81-106 35-60 (259)
452 KOG0923 mRNA splicing factor A 97.7 0.00045 9.6E-09 60.4 9.8 33 72-106 272-304 (902)
453 COG4608 AppF ABC-type oligopep 97.7 0.00043 9.3E-09 54.4 9.0 109 80-192 37-167 (268)
454 TIGR02760 TraI_TIGR conjugativ 97.7 0.00077 1.7E-08 67.4 12.8 122 65-193 430-565 (1960)
455 cd03217 ABC_FeS_Assembly ABC-t 97.7 0.00012 2.6E-09 56.0 5.9 42 155-196 122-165 (200)
456 COG1061 SSL2 DNA or RNA helica 97.7 0.00051 1.1E-08 59.0 10.3 41 65-107 40-80 (442)
457 TIGR01351 adk adenylate kinase 97.7 0.00031 6.7E-09 54.2 8.2 22 85-106 2-23 (210)
458 TIGR02533 type_II_gspE general 97.6 0.0012 2.5E-08 57.4 12.4 48 59-107 220-267 (486)
459 TIGR01360 aden_kin_iso1 adenyl 97.6 5.8E-05 1.2E-09 57.0 4.0 25 82-106 3-27 (188)
460 PRK10463 hydrogenase nickel in 97.6 0.00086 1.9E-08 53.8 10.6 41 67-107 89-129 (290)
461 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.0019 4.2E-08 49.6 12.4 42 155-196 143-185 (207)
462 COG2909 MalT ATP-dependent tra 97.6 0.00048 1E-08 61.9 9.9 136 57-198 15-173 (894)
463 TIGR01967 DEAH_box_HrpA ATP-de 97.6 0.00079 1.7E-08 64.2 11.9 38 67-106 69-106 (1283)
464 PF08298 AAA_PrkA: PrkA AAA do 97.6 0.00012 2.6E-09 59.8 5.6 45 62-106 62-112 (358)
465 cd03239 ABC_SMC_head The struc 97.6 0.00088 1.9E-08 50.2 10.0 40 156-195 117-158 (178)
466 TIGR01313 therm_gnt_kin carboh 97.6 4.2E-05 9E-10 56.5 2.8 22 85-106 1-22 (163)
467 PRK10436 hypothetical protein; 97.6 0.0014 3E-08 56.4 12.3 48 59-107 196-243 (462)
468 PF00519 PPV_E1_C: Papillomavi 97.6 0.00014 3.1E-09 59.8 5.9 119 71-217 250-385 (432)
469 TIGR02525 plasmid_TraJ plasmid 97.6 0.00098 2.1E-08 55.7 10.9 25 83-107 150-174 (372)
470 COG1117 PstB ABC-type phosphat 97.6 0.00095 2.1E-08 50.7 9.5 47 58-106 11-57 (253)
471 PRK06762 hypothetical protein; 97.6 6.4E-05 1.4E-09 55.6 3.5 23 84-106 4-26 (166)
472 PRK13536 nodulation factor exp 97.6 0.00039 8.4E-09 57.7 8.3 39 155-193 190-230 (340)
473 PF08303 tRNA_lig_kinase: tRNA 97.6 0.0041 8.8E-08 45.3 12.4 85 86-192 3-97 (168)
474 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.0013 2.7E-08 50.4 10.6 20 84-103 30-49 (200)
475 TIGR02868 CydC thiol reductant 97.6 0.00038 8.3E-09 61.4 8.8 27 80-106 359-385 (529)
476 PRK09825 idnK D-gluconate kina 97.6 0.00055 1.2E-08 51.2 8.4 25 82-106 3-27 (176)
477 TIGR02237 recomb_radB DNA repa 97.6 0.0011 2.4E-08 51.0 10.3 39 82-123 12-50 (209)
478 TIGR01663 PNK-3'Pase polynucle 97.6 0.00047 1E-08 60.1 9.0 89 81-193 368-456 (526)
479 KOG2383 Predicted ATPase [Gene 97.6 0.00093 2E-08 55.2 10.1 25 82-106 114-138 (467)
480 COG1127 Ttg2A ABC-type transpo 97.6 0.00065 1.4E-08 52.4 8.7 27 80-106 32-58 (263)
481 PRK13543 cytochrome c biogenes 97.6 0.00049 1.1E-08 53.2 8.3 27 80-106 35-61 (214)
482 PRK08233 hypothetical protein; 97.6 6.3E-05 1.4E-09 56.5 3.3 24 84-107 5-28 (182)
483 PRK11131 ATP-dependent RNA hel 97.6 0.00095 2E-08 63.6 11.5 37 68-106 77-113 (1294)
484 PRK05057 aroK shikimate kinase 97.6 0.00012 2.5E-09 54.6 4.6 25 82-106 4-28 (172)
485 TIGR03740 galliderm_ABC gallid 97.6 0.00023 5E-09 55.4 6.4 42 155-196 142-185 (223)
486 COG1703 ArgK Putative periplas 97.6 0.00034 7.3E-09 55.6 7.2 49 79-128 48-96 (323)
487 TIGR01188 drrA daunorubicin re 97.6 0.00038 8.3E-09 56.8 7.9 39 155-193 142-182 (302)
488 cd03251 ABCC_MsbA MsbA is an e 97.6 0.0017 3.8E-08 50.8 11.4 42 155-196 156-198 (234)
489 cd01878 HflX HflX subfamily. 97.6 0.0096 2.1E-07 45.5 15.3 24 82-105 41-64 (204)
490 PRK13537 nodulation ABC transp 97.6 0.00042 9.2E-09 56.6 8.1 40 154-193 155-196 (306)
491 COG4525 TauB ABC-type taurine 97.6 0.0004 8.8E-09 51.9 7.1 26 81-106 30-55 (259)
492 PRK13948 shikimate kinase; Pro 97.5 0.00012 2.7E-09 54.9 4.5 26 81-106 9-34 (182)
493 PRK05541 adenylylsulfate kinas 97.5 9.9E-05 2.2E-09 55.2 4.0 27 81-107 6-32 (176)
494 TIGR03522 GldA_ABC_ATP gliding 97.5 0.00051 1.1E-08 56.0 8.5 39 155-193 151-190 (301)
495 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 0.00044 9.5E-09 53.9 7.8 41 155-195 160-202 (224)
496 smart00534 MUTSac ATPase domai 97.5 0.002 4.3E-08 48.7 11.1 21 85-105 2-22 (185)
497 TIGR02322 phosphon_PhnN phosph 97.5 8.7E-05 1.9E-09 55.7 3.7 24 84-107 3-26 (179)
498 PF13337 Lon_2: Putative ATP-d 97.5 0.00041 8.9E-09 58.5 7.9 115 81-217 207-354 (457)
499 cd02020 CMPK Cytidine monophos 97.5 0.0001 2.2E-09 53.2 3.9 22 85-106 2-23 (147)
500 TIGR01613 primase_Cterm phage/ 97.5 0.00051 1.1E-08 56.1 8.3 129 65-214 53-203 (304)
No 1
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-35 Score=229.40 Aligned_cols=193 Identities=53% Similarity=0.784 Sum_probs=178.4
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248)
...|.++|+|+.|+++.||+.++..|.+.+.....+|++|+||||||||+.|.++++++.|+......+.+.+.++.++.
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc
Confidence 34599999999999999999999999999988889999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhh
Q 025762 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFL 207 (248)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~ 207 (248)
..++..++.++....... ......+..+.|+||||+|.|+.+.|++|.+.||.+...++||++||...+++ +.+.|||
T Consensus 103 svvr~Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii-~pi~SRC 180 (346)
T KOG0989|consen 103 SVVREKIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII-RPLVSRC 180 (346)
T ss_pred cchhhhhcCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC-hHHHhhH
Confidence 999988888887766554 44556677789999999999999999999999999999999999999999999 9999999
Q ss_pred heeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 208 LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
..|.|.++..+++ ..+|+.||.+|+++.++..+.+
T Consensus 181 ~KfrFk~L~d~~i----v~rL~~Ia~~E~v~~d~~al~~ 215 (346)
T KOG0989|consen 181 QKFRFKKLKDEDI----VDRLEKIASKEGVDIDDDALKL 215 (346)
T ss_pred HHhcCCCcchHHH----HHHHHHHHHHhCCCCCHHHHHH
Confidence 9999999999999 9999999999999999887654
No 2
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.97 E-value=3.6e-31 Score=197.27 Aligned_cols=187 Identities=44% Similarity=0.619 Sum_probs=170.8
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
....||.++|+|..+.+++|+++.+.++.-....++.+|++|.||||+||||-+..+|+.+.+..+ ...+.+++.++.+
T Consensus 12 ~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-ke~vLELNASdeR 90 (333)
T KOG0991|consen 12 KYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-KEAVLELNASDER 90 (333)
T ss_pred cccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-hhHhhhccCcccc
Confidence 445689999999999999999999999999999999999999999999999999999999966554 5578899999999
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHh
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFS 205 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~ 205 (248)
+.+.++..++.++...+.-+ .++.+++|+||+|.|....|.+|.+.||-+...++|.++||...++. +++.|
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp-------~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIi-EPIQS 162 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLP-------PGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKII-EPIQS 162 (333)
T ss_pred ccHHHHHHHHHHHHhhccCC-------CCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhh-hhHHh
Confidence 99999999999887654422 23457999999999999999999999999999999999999999999 99999
Q ss_pred hhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 206 FLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 206 r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
||.+++|..+++.++ ..++..++..|++.+.++.|.
T Consensus 163 RCAiLRysklsd~qi----L~Rl~~v~k~Ekv~yt~dgLe 198 (333)
T KOG0991|consen 163 RCAILRYSKLSDQQI----LKRLLEVAKAEKVNYTDDGLE 198 (333)
T ss_pred hhHhhhhcccCHHHH----HHHHHHHHHHhCCCCCcchHH
Confidence 999999999999999 999999999999999888765
No 3
>PLN03025 replication factor C subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=213.31 Aligned_cols=185 Identities=48% Similarity=0.665 Sum_probs=159.8
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (248)
.||.++|+|..+++++|+++++..|..++..++.+|++|+||||||||++|+++++.+.+... ...+.+++.++..+.+
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-KEAVLELNASDDRGID 79 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccceeeecccccccHH
Confidence 389999999999999999999999999999888899999999999999999999999866543 3467788888877777
Q ss_pred HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhh
Q 025762 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLL 208 (248)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~ 208 (248)
.+++.+..+....... ...++++++|||+|.++...+++|++.++.++..+++|++||....+. +++++||.
T Consensus 80 ~vr~~i~~~~~~~~~~-------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~-~~L~SRc~ 151 (319)
T PLN03025 80 VVRNKIKMFAQKKVTL-------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKII-EPIQSRCA 151 (319)
T ss_pred HHHHHHHHHHhccccC-------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccc-hhHHHhhh
Confidence 7777766544322111 113468999999999999999999999999888889999999999999 99999999
Q ss_pred eeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 209 FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 209 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
.+.|.+++.+++ ..++..++.++|+..+++.+.+
T Consensus 152 ~i~f~~l~~~~l----~~~L~~i~~~egi~i~~~~l~~ 185 (319)
T PLN03025 152 IVRFSRLSDQEI----LGRLMKVVEAEKVPYVPEGLEA 185 (319)
T ss_pred cccCCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999 9999999999999988887665
No 4
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=6.6e-30 Score=213.38 Aligned_cols=186 Identities=26% Similarity=0.355 Sum_probs=157.7
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc-------------
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------- 111 (248)
....+|.++|||+.|++++||+.++..|..++..++.+| ++|+||+|||||++|+.+++.+.|...
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 456789999999999999999999999999999988666 899999999999999999999977531
Q ss_pred -----cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCce
Q 025762 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (248)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~ 186 (248)
...+++++++....+.+.+++.......... .+++.|+||||+|.++.+.+++|++.+|+.+.+.
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~----------~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~v 152 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM----------GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHI 152 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhh----------cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCce
Confidence 1235667777665566666665554432221 1246799999999999999999999999999999
Q ss_pred EEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 187 RFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 187 ~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
.||++|+....++ ++++|||..+.|.+++.+++ ..++++++..+|+..++.++.+
T Consensus 153 iFILaTte~~kI~-~TI~SRCq~~~f~~ls~~~i----~~~L~~i~~~Egi~~e~eAL~~ 207 (484)
T PRK14956 153 VFILATTEFHKIP-ETILSRCQDFIFKKVPLSVL----QDYSEKLCKIENVQYDQEGLFW 207 (484)
T ss_pred EEEeecCChhhcc-HHHHhhhheeeecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999 99999999999999999999 9999999999999888877653
No 5
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=1.8e-29 Score=218.41 Aligned_cols=183 Identities=23% Similarity=0.271 Sum_probs=157.1
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
++.|.++|||+.|++++||+.+++.|.+++..++.+| +||+||+|||||++++.+++.+.|...
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 5678999999999999999999999999999888777 599999999999999999999977531
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...++++++..+..+.+.++.++........ ..+++|+||||+|.|+...++.|++.||+.+.++.|
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~----------~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPV----------DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccc----------cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 1225777877776777777776654432211 134689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
|++||+...++ ++|+|||..|.|.+++.+++ ..+|++++.+|+++.+++.+.
T Consensus 153 ILaTtd~~KIp-~TIrSRCq~f~Fk~Ls~eeI----v~~L~~Il~~EgI~id~eAL~ 204 (830)
T PRK07003 153 ILATTDPQKIP-VTVLSRCLQFNLKQMPAGHI----VSHLERILGEERIAFEPQALR 204 (830)
T ss_pred EEEECChhhcc-chhhhheEEEecCCcCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999 99999999999999999999 999999999999988877654
No 6
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=2e-29 Score=215.44 Aligned_cols=183 Identities=23% Similarity=0.271 Sum_probs=158.0
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCC----------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE---------------- 110 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~---------------- 110 (248)
++.|.++|+|+.|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.+.|..
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 5679999999999999999999999999999998877 59999999999999999999998731
Q ss_pred -------ccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC
Q 025762 111 -------LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (248)
Q Consensus 111 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~ 183 (248)
+...++++++.....+.+.+++++........ .++++|+||||+|.|+...+|.|++.||+.+
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~----------~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPT----------AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchh----------cCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 11236777877766777777777665443221 2346899999999999999999999999999
Q ss_pred CceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 184 KVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
.++.||++||....++ ++++|||..+.|.+++.+++ ..+|.+++.+++++.+++.+.
T Consensus 153 ~~v~FILaTtep~kLl-pTIrSRCq~f~f~~ls~eei----~~~L~~Il~~Egi~~d~eAL~ 209 (700)
T PRK12323 153 EHVKFILATTDPQKIP-VTVLSRCLQFNLKQMPPGHI----VSHLDAILGEEGIAHEVNALR 209 (700)
T ss_pred CCceEEEEeCChHhhh-hHHHHHHHhcccCCCChHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999 99999999999999999999 999999999999988776543
No 7
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=1e-28 Score=211.14 Aligned_cols=185 Identities=22% Similarity=0.253 Sum_probs=159.8
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc--------------
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~-------------- 111 (248)
.+..|.++|||+.|++++||+.+++.|.+++..++.+| +||+||+|||||++|+.+++.+.|...
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 35689999999999999999999999999999988777 699999999999999999999977532
Q ss_pred ----cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceE
Q 025762 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (248)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ 187 (248)
...++++++.....+.+.+++.+........ .++++|+||||+|.|+...+++|++.||+.++.+.
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~----------~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT----------KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccc----------cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 2235788887777777777776665443221 23578999999999999999999999999999999
Q ss_pred EEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 188 FFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 188 ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
||++|+++..++ ++++|||..+.|.+++.+++ ..++..++.++|++.++..+.+
T Consensus 152 fIlattd~~kl~-~tI~SRc~~~~f~~l~~~~i----~~~l~~il~~egi~~~~~al~~ 205 (509)
T PRK14958 152 FILATTDHHKLP-VTVLSRCLQFHLAQLPPLQI----AAHCQHLLKEENVEFENAALDL 205 (509)
T ss_pred EEEEECChHhch-HHHHHHhhhhhcCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999 99999999999999999999 9999999999999988776543
No 8
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=2.7e-28 Score=214.72 Aligned_cols=183 Identities=23% Similarity=0.252 Sum_probs=154.7
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~i-ll~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
+.+|.++|||..|++++||+.+++.|.+++..++.+|. ||+||+|||||++|+.+++.+.|...
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 56899999999999999999999999999999888885 89999999999999999999987522
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
....+++++..+..+.+.++.+...+..... .++++|+||||+|+|+...++.|++.||+++..++|
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~----------~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS----------RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhh----------cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 1223456666544556667766655433221 134689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
|++|+....++ ++++|||..+.|.+++.+++ ..+|.+++..+++..++..+.
T Consensus 153 ILaTTe~~kLl-~TIlSRCq~f~fkpLs~eEI----~~~L~~il~~EgI~~edeAL~ 204 (944)
T PRK14949 153 LLATTDPQKLP-VTVLSRCLQFNLKSLTQDEI----GTQLNHILTQEQLPFEAEALT 204 (944)
T ss_pred EEECCCchhch-HHHHHhheEEeCCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999 99999999999999999999 999999999999888766554
No 9
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=3.8e-28 Score=210.51 Aligned_cols=182 Identities=22% Similarity=0.258 Sum_probs=155.7
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
+.++.++|||..|++++||+.+++.|.+.+..++.+| +||+||+|+|||++|+.+++.+.|...
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 5688999999999999999999999999999988877 589999999999999999999987532
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...++++++.......+.+++++......... ++++|+||||+|+|+...+++|++.||+.+++++|
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~----------g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~F 152 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPAR----------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhc----------CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEE
Confidence 12255667766555666677766654433221 34689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
|++|++...++ ++++|||..+.|.+++.+++ ..+|.+++..+++..++..+
T Consensus 153 IL~Tt~~~kLl-~TI~SRC~~~~f~~Ls~~ei----~~~L~~il~~e~i~~e~~aL 203 (647)
T PRK07994 153 LLATTDPQKLP-VTILSRCLQFHLKALDVEQI----RQQLEHILQAEQIPFEPRAL 203 (647)
T ss_pred EEecCCccccc-hHHHhhheEeeCCCCCHHHH----HHHHHHHHHHcCCCCCHHHH
Confidence 99999999999 99999999999999999999 99999999999988877655
No 10
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=5e-28 Score=207.42 Aligned_cols=184 Identities=22% Similarity=0.253 Sum_probs=157.0
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCC----------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE---------------- 110 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~---------------- 110 (248)
+.++..+|||+.|++++||+.+++.|.+++..++.+| ++|+||+|+|||++|+++|+.+.|..
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 3578899999999999999999999999999887665 69999999999999999999997642
Q ss_pred --ccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 111 --LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
+...++++++..+..+.+.++..+........ .++++|+||||+|+|+...++.|++.+++.+..+.|
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~----------~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT----------QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhh----------cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 22336777887766677777776655433222 134689999999999999999999999999989999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|++|+....++ +++++||..+.|.+++.+++ ..++..++.++++..++.++.+
T Consensus 152 ILaTtd~~kIp-~TIlSRCq~feFkpLs~eEI----~k~L~~Il~kEgI~id~eAL~~ 204 (702)
T PRK14960 152 LFATTDPQKLP-ITVISRCLQFTLRPLAVDEI----TKHLGAILEKEQIAADQDAIWQ 204 (702)
T ss_pred EEEECChHhhh-HHHHHhhheeeccCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999 99999999999999999999 9999999999999988877643
No 11
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=8e-28 Score=202.96 Aligned_cols=182 Identities=23% Similarity=0.330 Sum_probs=158.7
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHhcCCCc-----------------
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~-~ill~Gp~G~GKT~la~~la~~~~~~~~----------------- 111 (248)
.|..+|||+.|++++||+.+++.|.+++..++.+ +++|+||+|+|||++|+.+|+.+.|...
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 3678999999999999999999999999888766 5999999999999999999998866432
Q ss_pred -cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 025762 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (248)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~ 190 (248)
...+++++++.+..+.+.++..+......... ++++|+||||+|.++...+++|++.+|+.++.+.+|+
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~----------~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPIS----------SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhcccc----------CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 34577889988777888888776654432221 3578999999999999999999999999999999999
Q ss_pred EeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 191 ICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 191 ~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+|+....+. +++.+||..+.|.+++.+++ ..++..++.++|+..+++++.+
T Consensus 152 atte~~Kl~-~tI~SRc~~~~f~~l~~~el----~~~L~~ia~~Egi~i~~eAL~l 202 (491)
T PRK14964 152 ATTEVKKIP-VTIISRCQRFDLQKIPTDKL----VEHLVDIAKKENIEHDEESLKL 202 (491)
T ss_pred EeCChHHHH-HHHHHhheeeecccccHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999 99999999999999999999 9999999999999988877654
No 12
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1.7e-27 Score=205.43 Aligned_cols=182 Identities=25% Similarity=0.269 Sum_probs=155.4
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc-----------------
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~----------------- 111 (248)
.|.++|||+.|++++||+.+++.|.+++..++.+| ++|+||+|||||++|+.+++.+.|...
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 36689999999999999999999999999998888 689999999999999999999987431
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...++++++.....+.+.++++.......... ++++|+||||+|.++...+++|++.||+.+..+.|
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~----------~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ----------SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhc----------CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 12456777776666677777665544332221 34689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|++|+....+. ++++|||..+.|.+++.+++ ..++..++.++|+..++..+.+
T Consensus 152 IL~tte~~kll-~TI~SRc~~~~F~~l~~~~i----~~~L~~i~~~egi~i~~~al~~ 204 (584)
T PRK14952 152 IFATTEPEKVL-PTIRSRTHHYPFRLLPPRTM----RALIARICEQEGVVVDDAVYPL 204 (584)
T ss_pred EEEeCChHhhH-HHHHHhceEEEeeCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999 99999999999999999999 9999999999999888776544
No 13
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1.6e-27 Score=203.76 Aligned_cols=184 Identities=22% Similarity=0.295 Sum_probs=154.5
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
+.+|.++|||..|++++||+.+++.|..++..++.+| ++|+||+|+|||++|+.+++.+.|...
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 5789999999999999999999999999999988777 789999999999999999999976322
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...++++++.....+.+.++..+........ .+++.|+||||+|+++...++.|++.+|+.++.+.|
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~----------~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS----------QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHHhhhh----------cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 1225566665454555666666555433222 134689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|++|++...++ ++++|||..+.|.+++.+++ ..++..++.++++..++.++.+
T Consensus 153 IL~Ttd~~kil-~tI~SRc~~~~f~~Ls~~eI----~~~L~~il~~egi~~e~~Al~~ 205 (546)
T PRK14957 153 ILATTDYHKIP-VTILSRCIQLHLKHISQADI----KDQLKIILAKENINSDEQSLEY 205 (546)
T ss_pred EEEECChhhhh-hhHHHheeeEEeCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999 99999999999999999999 9999999999999888876543
No 14
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=9.7e-28 Score=207.56 Aligned_cols=184 Identities=24% Similarity=0.308 Sum_probs=157.4
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
+..|.++|||+.|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.+.|...
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 5679999999999999999999999999999998877 599999999999999999999987421
Q ss_pred --------cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC
Q 025762 112 --------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (248)
Q Consensus 112 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~ 183 (248)
...++++++.....+.+.+++.+........ .++++|+||||+|.|+...++.|++.+|+.+
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~----------~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP 152 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPV----------QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP 152 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcc----------cCCceEEEEEChhhCCHHHHHHHHHhcccCC
Confidence 2236677777666677777776654332211 2346899999999999999999999999999
Q ss_pred CceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 184 KVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
..+.||++|+++..++ ++++|||..+.|.+++.+++ ..++..++.++|+..++..+.+
T Consensus 153 ~~~~fIL~Ttd~~kil-~TIlSRc~~~~f~~Ls~eei----~~~L~~i~~~egi~ie~~AL~~ 210 (618)
T PRK14951 153 EYLKFVLATTDPQKVP-VTVLSRCLQFNLRPMAPETV----LEHLTQVLAAENVPAEPQALRL 210 (618)
T ss_pred CCeEEEEEECCchhhh-HHHHHhceeeecCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999 99999999999999999999 9999999999999988876654
No 15
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=2.2e-27 Score=211.76 Aligned_cols=182 Identities=24% Similarity=0.267 Sum_probs=154.4
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc-----------------
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~----------------- 111 (248)
.|.++|||..|++++||+.+++.|.+++..++..| +||+||+|||||++|+.|++.+.|...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 46799999999999999999999999999988877 799999999999999999999987532
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...++++++.....+.+.++++......... ..+++|+||||+|+|+...+|.|+++||+.+..+.|
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~----------~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPA----------ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchh----------cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 1235677777666667777765544332111 235789999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
||+|+....+. ++|+|||.++.|.+++.+++ ..+|..++.++++..++..+.+
T Consensus 154 Il~tt~~~kLl-~TIrSRc~~v~F~~l~~~~l----~~~L~~il~~EGv~id~eal~l 206 (824)
T PRK07764 154 IFATTEPDKVI-GTIRSRTHHYPFRLVPPEVM----RGYLERICAQEGVPVEPGVLPL 206 (824)
T ss_pred EEEeCChhhhh-HHHHhheeEEEeeCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99999888898 99999999999999999999 9999999999999887776543
No 16
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=6.3e-27 Score=199.21 Aligned_cols=183 Identities=25% Similarity=0.326 Sum_probs=155.6
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHhcCCCc----------------
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~i-ll~Gp~G~GKT~la~~la~~~~~~~~---------------- 111 (248)
..|.++|||..|++++||+.+++.|..++..++.+|. +|+||+|+|||++|+++++.+.|...
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 4688999999999999999999999999999987775 89999999999999999999976543
Q ss_pred --cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 025762 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (248)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii 189 (248)
.+..+++++.....+.+.+++.+......+. .++++|+||||+|.++.+.+++|++.+|+.+..+.||
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~----------~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPS----------MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcc----------cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 2345677776655667777776654322111 1346899999999999999999999999999999999
Q ss_pred EEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 190 FICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 190 ~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
++|+++..++ ++++|||..+.|.+++.+++ ..++..++.++|+..++.++.+
T Consensus 152 L~ttd~~kL~-~tI~SRc~~~~F~~Ls~~ei----~~~L~~Il~~EGi~i~~~Al~~ 203 (535)
T PRK08451 152 LATTDPLKLP-ATILSRTQHFRFKQIPQNSI----ISHLKTILEKEGVSYEPEALEI 203 (535)
T ss_pred EEECChhhCc-hHHHhhceeEEcCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999 99999999999999999999 9999999999999887776543
No 17
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=5.4e-27 Score=194.48 Aligned_cols=183 Identities=20% Similarity=0.299 Sum_probs=149.1
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc--------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (248)
..++.++|+|+.|++++||+.+++.+.+++..++.+| ++|+||+|+|||++|+++++.+.|....
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 5689999999999999999999999999999887777 5899999999999999999999764321
Q ss_pred ----ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
..++.++++........++.......... ..++++|+||||+|.++...++.|++.+++.+....+
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p----------~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSP----------SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCc----------ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 12445555544344444554444322111 1234579999999999999999999999999989999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
|++|+....+. +++.+||..+.|.|++.+++ ..++..++..+++..+++.+.
T Consensus 153 Il~t~~~~~l~-~tI~SRc~~~~~~~l~~~el----~~~L~~~~~~~g~~i~~~al~ 204 (363)
T PRK14961 153 ILATTDVEKIP-KTILSRCLQFKLKIISEEKI----FNFLKYILIKESIDTDEYALK 204 (363)
T ss_pred EEEcCChHhhh-HHHHhhceEEeCCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 99999888898 99999999999999999999 999999999999887776654
No 18
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=6.7e-27 Score=198.87 Aligned_cols=186 Identities=24% Similarity=0.297 Sum_probs=158.2
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHhcCCCc-------------
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~------------- 111 (248)
..+.+|..+|+|+.|++++||+.+++.|..++..++. ++++|+||+|||||++|+.+++.+.|...
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 5578999999999999999999999999998877764 57999999999999999999999977431
Q ss_pred ---------cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc
Q 025762 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (248)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~ 182 (248)
...++.+++.....+.+.++..+........ .++++|+||||+|.++...++.|++.+++.
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~----------~~~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPL----------QGKHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccc----------cCCcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 2336777777666677777776655433221 235689999999999999999999999999
Q ss_pred CCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 183 SKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 183 ~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+..+.||++|+....++ +++.+||..+.|.+++.+++ ..++..++.++++..+++++.+
T Consensus 156 p~~~vfI~aTte~~kI~-~tI~SRc~~~ef~~ls~~el----~~~L~~i~~~egi~ie~eAL~~ 214 (507)
T PRK06645 156 PPHIIFIFATTEVQKIP-ATIISRCQRYDLRRLSFEEI----FKLLEYITKQENLKTDIEALRI 214 (507)
T ss_pred CCCEEEEEEeCChHHhh-HHHHhcceEEEccCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999889998 99999999999999999999 9999999999999888776653
No 19
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=5.4e-27 Score=202.71 Aligned_cols=184 Identities=25% Similarity=0.327 Sum_probs=156.0
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc--------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (248)
+..|..+|||+.|++++||+.+++.|..++..++.+| +||+||+|+|||++|+.+++.+.|....
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 5678999999999999999999999999999887665 7999999999999999999998775321
Q ss_pred ----ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
..++++++.....+.+.+++.+......... ++++|+||||+|.++...++.|++.|++.++.+.|
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~----------gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTA----------GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhh----------CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 2245667766666777777766543322211 24689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|++|++...++ .+++|||..|.|.+++.+++ ..+|..++.++|+..++..+.+
T Consensus 153 ILaTtd~~kL~-~TIrSRC~~f~f~~Ls~eeI----~~~L~~Il~kEgi~id~eAL~~ 205 (709)
T PRK08691 153 ILATTDPHKVP-VTVLSRCLQFVLRNMTAQQV----ADHLAHVLDSEKIAYEPPALQL 205 (709)
T ss_pred EEEeCCccccc-hHHHHHHhhhhcCCCCHHHH----HHHHHHHHHHcCCCcCHHHHHH
Confidence 99999999999 99999999999999999999 9999999999999988776643
No 20
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.4e-28 Score=203.34 Aligned_cols=184 Identities=28% Similarity=0.333 Sum_probs=162.2
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCC----------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE---------------- 110 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~---------------- 110 (248)
+..+..+|||+.|++++||+.+++.|..++..++..| .+|+||-|||||++|+.+|+.+.|..
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 4567889999999999999999999999999887655 89999999999999999999998774
Q ss_pred --ccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 111 --LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
+...++++++.....+.+.++.+.......+. .++++|.+|||+|.++....|+|++.+|+.+.+..|
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~----------~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~F 152 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPS----------EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKF 152 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCc----------cccceEEEEecHHhhhHHHHHHHhcccccCccCeEE
Confidence 22346777777777777878777766544333 345789999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|++|+.+.+++ .+++|||+.+.|..++.+++ ...|..++.+|++..++.++.+
T Consensus 153 IlATTe~~Kip-~TIlSRcq~f~fkri~~~~I----~~~L~~i~~~E~I~~e~~aL~~ 205 (515)
T COG2812 153 ILATTEPQKIP-NTILSRCQRFDFKRLDLEEI----AKHLAAILDKEGINIEEDALSL 205 (515)
T ss_pred EEecCCcCcCc-hhhhhccccccccCCCHHHH----HHHHHHHHHhcCCccCHHHHHH
Confidence 99999999999 99999999999999999999 9999999999999999988764
No 21
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.95 E-value=1.5e-26 Score=198.11 Aligned_cols=183 Identities=23% Similarity=0.325 Sum_probs=153.7
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc--------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (248)
..+|.++|||..|++++||+.+++.|.+++..++.+| ++|+||+|+|||++|+.+|+.+.|....
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4589999999999999999999999999998876665 8999999999999999999999764321
Q ss_pred ----ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
..+++++++....+.+.++.........+.. ++++|+||||+|.++...++.|++.|++.++.+.+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~----------~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvf 152 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTT----------FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVF 152 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhh----------CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEE
Confidence 2356666665555666666666554432221 24689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
|++|+.+..+. +++++||..+.|.+++.+++ ..++..++.++++..++..+.
T Consensus 153 IL~Tt~~~KLl-~TI~SRcq~ieF~~Ls~~eL----~~~L~~il~kegi~Is~eal~ 204 (605)
T PRK05896 153 IFATTEFQKIP-LTIISRCQRYNFKKLNNSEL----QELLKSIAKKEKIKIEDNAID 204 (605)
T ss_pred EEECCChHhhh-HHHHhhhhhcccCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999 99999999999999999999 999999999999887776554
No 22
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1.4e-26 Score=199.33 Aligned_cols=183 Identities=24% Similarity=0.297 Sum_probs=153.7
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
+..+.++|+|..|++++||+.+++.|.+++..++.+| ++|+||+|+|||++|+.+++.+.|...
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 5678999999999999999999999999999988777 589999999999999999999977432
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...++++++.......+.++..+........ .++++|+||||+|.++...++.|++.+++.++.+.+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~----------~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT----------RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc----------cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 1224566666555566666666554332211 235689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
|++|+++..++ ++++|||..+.|.+++.+++ ..++..++.++|+..++..+.
T Consensus 153 IL~t~d~~kil-~tI~SRc~~~~f~~l~~~~i----~~~L~~il~~egi~~~~~al~ 204 (527)
T PRK14969 153 ILATTDPQKIP-VTVLSRCLQFNLKQMPPPLI----VSHLQHILEQENIPFDATALQ 204 (527)
T ss_pred EEEeCChhhCc-hhHHHHHHHHhcCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999 89999999999999999999 999999999999988776553
No 23
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=1.7e-26 Score=195.65 Aligned_cols=182 Identities=27% Similarity=0.389 Sum_probs=150.9
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc-----------------
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~----------------- 111 (248)
.|.++|||+.|++++||+.+.+.|..++..++.++ ++|+||||||||++|+++++.+.|...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 57899999999999999999999999998888766 899999999999999999999876421
Q ss_pred -cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 025762 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (248)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~ 190 (248)
....++++++....+.+.++........... .+++.|+||||+|.+....++.|+..+++.++...+|+
T Consensus 83 g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~----------~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRKIRDAVGYRPM----------EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHHHHHHHhhChh----------cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1225677777665666666654433222111 13467999999999999999999999999888888888
Q ss_pred EeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 191 ICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 191 ~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+|+.+..+. +++.+||..+.|.+++.+++ ..+++.++..+++..+++.+.+
T Consensus 153 attn~~kl~-~~L~SR~~vv~f~~l~~~el----~~~L~~i~~~egi~i~~eal~~ 203 (472)
T PRK14962 153 ATTNLEKVP-PTIISRCQVIEFRNISDELI----IKRLQEVAEAEGIEIDREALSF 203 (472)
T ss_pred EeCChHhhh-HHHhcCcEEEEECCccHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 888888898 99999999999999999999 9999999999999888876654
No 24
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=1.6e-26 Score=201.13 Aligned_cols=184 Identities=27% Similarity=0.357 Sum_probs=156.4
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc--------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (248)
+..+.++|||+.|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.+.|....
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 4568899999999999999999999999999988776 5899999999999999999999775421
Q ss_pred ----ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
..++++++.....+.+.++++......... .++++|+||||+|.++...++.|++.||+.+..+.|
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~----------~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~f 152 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPS----------RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccc----------cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEE
Confidence 335677776666666667666554432211 235789999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|++|+.+..++ ++++|||..+.|.+++.+++ ..++..++.++|+..++..+.+
T Consensus 153 Il~t~~~~kl~-~tI~SRc~~~~f~~l~~~~i----~~~L~~i~~~egi~i~~~al~~ 205 (576)
T PRK14965 153 IFATTEPHKVP-ITILSRCQRFDFRRIPLQKI----VDRLRYIADQEGISISDAALAL 205 (576)
T ss_pred EEEeCChhhhh-HHHHHhhhhhhcCCCCHHHH----HHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999 99999999999999999999 9999999999999888776643
No 25
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=2.2e-26 Score=200.61 Aligned_cols=185 Identities=25% Similarity=0.386 Sum_probs=154.1
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc-------------
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------- 111 (248)
....+|..+|||..|++++||+.+++.|..++..++..| +||+||+|+|||++|+.+|+.+.|...
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 456789999999999999999999999999999887666 589999999999999999999977532
Q ss_pred --cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 025762 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (248)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii 189 (248)
....++++++....+.+.++.+.......+.. ++++|+||||+|.|+...+++|++.||+.+..+.+|
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~----------g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQ----------SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhc----------CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 12234555554444556666666554433222 346899999999999999999999999999999999
Q ss_pred EEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 190 FICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 190 ~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
++|+.+..++ +++++||..+.|.+++.+++ ..++..++.++|+..++.++.
T Consensus 153 LaTte~~KLl-~TI~SRcq~ieF~~L~~eeI----~~~L~~il~kegI~id~eAl~ 203 (725)
T PRK07133 153 LATTEVHKIP-LTILSRVQRFNFRRISEDEI----VSRLEFILEKENISYEKNALK 203 (725)
T ss_pred EEcCChhhhh-HHHHhhceeEEccCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999 99999999999999999999 999999999999887776543
No 26
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=2.7e-26 Score=197.47 Aligned_cols=184 Identities=24% Similarity=0.304 Sum_probs=152.9
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCC-CCeEEEEcCCCCcHHHHHHHHHHHhcCCC---------------
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~-~~~ill~Gp~G~GKT~la~~la~~~~~~~--------------- 110 (248)
...+|.++|||+.|++++||+.+++.|.+++..++ .+++||+||+|+|||++|+.+++.+.|..
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 35689999999999999999999999999998876 56788999999999999999999998742
Q ss_pred ---ccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceE
Q 025762 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (248)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ 187 (248)
+...++++++.....+.+.++.+...+..... ..++.|+||||+|.++...++.|++.+|+......
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~----------~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPM----------EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhh----------cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 12335667766555566666654443332221 12457999999999999999999999999888889
Q ss_pred EEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 188 FFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 188 ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
+|++|+....+. +++++||..+.|.+++.+++ ..+|..++.++++..++..+.
T Consensus 152 fILaTt~~~kll-~TI~SRcq~i~F~pLs~~eL----~~~L~~il~~egi~id~eal~ 204 (624)
T PRK14959 152 FVLATTEPHKFP-VTIVSRCQHFTFTRLSEAGL----EAHLTKVLGREGVDYDPAAVR 204 (624)
T ss_pred EEEecCChhhhh-HHHHhhhhccccCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 999999989998 99999999999999999999 999999999999887776554
No 27
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=2.4e-26 Score=199.24 Aligned_cols=185 Identities=27% Similarity=0.346 Sum_probs=157.8
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc-------------
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------- 111 (248)
..++.|..+|+|+.|++++||+.+++.|.+++..++.+| ++|+||+|+|||++|+.+++.+.|...
T Consensus 9 ~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 9 TPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred ccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 456789999999999999999999999999999887665 999999999999999999999977531
Q ss_pred ----------cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 025762 112 ----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (248)
Q Consensus 112 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~ 181 (248)
.+.++++++.....+.+.+++++........ .++++|+||||+|.++...++.|++.||+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~----------~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV----------SARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchh----------cCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 1235666766666677777776655443322 23468999999999999999999999999
Q ss_pred cCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 182 YSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 182 ~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
.++.+.||++|+....++ ++++|||..+.|.+++.+++ ..++..++.++++..+++.+.
T Consensus 159 Pp~~~~fIl~tte~~kll-~tI~SRcq~~~f~~l~~~el----~~~L~~i~~kegi~i~~eAl~ 217 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVP-VTVLSRCQRFDLRRIEADVL----AAHLSRIAAKEGVEVEDEALA 217 (598)
T ss_pred CCCCeEEEEEeCChhhhh-HHHHhheeEEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 999999999999888898 99999999999999999999 999999999999998877654
No 28
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.94 E-value=3.4e-26 Score=183.33 Aligned_cols=163 Identities=26% Similarity=0.296 Sum_probs=133.3
Q ss_pred cchhhccCCCccccccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
.|+..++||+.+++++||+..+ +.|.+++.++..++++|+|||||||||+|+.++... +..+..++....
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------~~~f~~~sAv~~- 84 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------NAAFEALSAVTS- 84 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh------CCceEEeccccc-
Confidence 4899999999999999999988 688899999999999999999999999999999998 556777766543
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe--CCCcccChHHH
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRCTFSAL 203 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~--n~~~~~~~~~l 203 (248)
+...++..+......... +++-||||||+|++++.+|+.|+..+|++. ..+|-+| |+.+.+. ++|
T Consensus 85 gvkdlr~i~e~a~~~~~~----------gr~tiLflDEIHRfnK~QQD~lLp~vE~G~--iilIGATTENPsF~ln-~AL 151 (436)
T COG2256 85 GVKDLREIIEEARKNRLL----------GRRTILFLDEIHRFNKAQQDALLPHVENGT--IILIGATTENPSFELN-PAL 151 (436)
T ss_pred cHHHHHHHHHHHHHHHhc----------CCceEEEEehhhhcChhhhhhhhhhhcCCe--EEEEeccCCCCCeeec-HHH
Confidence 455566666654333222 234699999999999999999999999864 2233333 7889999 999
Q ss_pred HhhhheeeeccCCccccchHHHHHHHHHHhhc
Q 025762 204 FSFLLFFMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 204 ~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
+|||.++.|.|++.+++ ...+++.+..+
T Consensus 152 lSR~~vf~lk~L~~~di----~~~l~ra~~~~ 179 (436)
T COG2256 152 LSRARVFELKPLSSEDI----KKLLKRALLDE 179 (436)
T ss_pred hhhhheeeeecCCHHHH----HHHHHHHHhhh
Confidence 99999999999999999 88888844433
No 29
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=4.1e-26 Score=197.72 Aligned_cols=183 Identities=25% Similarity=0.319 Sum_probs=155.5
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCC----------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE---------------- 110 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~---------------- 110 (248)
...|..+|||+.|++++||+.+++.|.+++..++.+| +||+||+|||||++|+.+++.+.|..
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 4568899999999999999999999999999887667 78899999999999999999997754
Q ss_pred --ccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 111 --LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
+...+++++++....+.+.++........... .+++.|+||||+|.|+...+++|++.+++.+..+.+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~----------~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~if 152 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPS----------EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIF 152 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcc----------cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEE
Confidence 22346777777666666666666554332211 235789999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
|++|+.+..++ ++++|||..+.|.+++.+++ ..++..++.++|+..++..+.
T Consensus 153 Ilatt~~~ki~-~tI~SRc~~~~f~~~~~~ei----~~~L~~i~~~egi~i~~~al~ 204 (559)
T PRK05563 153 ILATTEPHKIP-ATILSRCQRFDFKRISVEDI----VERLKYILDKEGIEYEDEALR 204 (559)
T ss_pred EEEeCChhhCc-HHHHhHheEEecCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999 99999999999999999999 999999999999988876654
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.94 E-value=1.4e-26 Score=174.09 Aligned_cols=169 Identities=21% Similarity=0.203 Sum_probs=117.2
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
..++.+.+||+.+++++||++++..+.-++.. ....|++|+||||+||||||+.+|+++ +..+...+.+
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~------~~~~~~~sg~ 84 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL------GVNFKITSGP 84 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC------T--EEEEECC
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc------CCCeEeccch
Confidence 45778899999999999999999877655442 345689999999999999999999999 4556556655
Q ss_pred CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC------------------C
Q 025762 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------K 184 (248)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------------------~ 184 (248)
.......+...+..+ .+++||||||+|++++.+++.|+..||++. +
T Consensus 85 ~i~k~~dl~~il~~l----------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 85 AIEKAGDLAAILTNL----------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp C--SCHHHHHHHHT------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred hhhhHHHHHHHHHhc----------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 443334444443332 124799999999999999999999999864 1
Q ss_pred ceEEEEEeCCCcccChHHHHhhhhe-eeeccCCccccchHHHHHHHHHHhhcCccccCce
Q 025762 185 VTRFFFICNYISRCTFSALFSFLLF-FMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLS 243 (248)
Q Consensus 185 ~~~ii~~~n~~~~~~~~~l~~r~~~-i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (248)
+..+|-+|+....+. .+|++||.+ ..+..|+.+|+ ..++++-+...+++.++..
T Consensus 149 ~FTligATTr~g~ls-~pLrdRFgi~~~l~~Y~~~el----~~Iv~r~a~~l~i~i~~~~ 203 (233)
T PF05496_consen 149 PFTLIGATTRAGLLS-SPLRDRFGIVLRLEFYSEEEL----AKIVKRSARILNIEIDEDA 203 (233)
T ss_dssp --EEEEEESSGCCTS-HCCCTTSSEEEE----THHHH----HHHHHHCCHCTT-EE-HHH
T ss_pred CceEeeeeccccccc-hhHHhhcceecchhcCCHHHH----HHHHHHHHHHhCCCcCHHH
Confidence 233677778888888 999999997 57999999999 9999999998888877654
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=6.5e-26 Score=193.62 Aligned_cols=181 Identities=27% Similarity=0.276 Sum_probs=152.0
Q ss_pred hhhccCCCccccccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHhcCCC-----------------cc
Q 025762 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPE-----------------LY 112 (248)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~i-ll~Gp~G~GKT~la~~la~~~~~~~-----------------~~ 112 (248)
+.++|||..|++++||+.++..|..++..++.+|. +|+||||||||++|+++++.+.|.+ ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 45899999999999999999999999999887775 9999999999999999999997643 22
Q ss_pred ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe
Q 025762 113 KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (248)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~ 192 (248)
..++.+++..+..+...+++.......... .+++.|+||||+|.++...++.|++.+++.+..+.+|+++
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~----------~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t 153 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPL----------RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILAT 153 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccc----------cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 345777777666666666665433332111 1346799999999999999999999999998888899999
Q ss_pred CCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 193 NYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 193 n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+....+. +++.+||..+.|.+++.+++ ..++..++.++|++.++.++.+
T Consensus 154 ~~~~kl~-~~I~SRc~~~~f~~ls~~el----~~~L~~i~~~egi~i~~~Al~~ 202 (504)
T PRK14963 154 TEPEKMP-PTILSRTQHFRFRRLTEEEI----AGKLRRLLEAEGREAEPEALQL 202 (504)
T ss_pred CChhhCC-hHHhcceEEEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 9888998 99999999999999999999 9999999999999888776654
No 32
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=3.8e-25 Score=188.35 Aligned_cols=184 Identities=29% Similarity=0.371 Sum_probs=151.7
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
..+|..+|+|..|++++||+.++..|.+++..++..| ++|+||+|+|||++|+.+++.+.|...
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 5699999999999999999999999999999987777 578999999999999999999876321
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...++++++.....+.+.++.........+. .+++.|+||||+|.++...++.|++.+++.+..+.+
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~----------~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI----------KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc----------cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1124556665555555555554433322111 134689999999999999999999999999989999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|++|+....++ +++.+||..+.|.+++.+++ ..++..++..+|+..+++++.+
T Consensus 153 Il~tt~~~kl~-~tI~SRc~~i~f~~ls~~el----~~~L~~i~k~egi~id~~al~~ 205 (486)
T PRK14953 153 ILCTTEYDKIP-PTILSRCQRFIFSKPTKEQI----KEYLKRICNEEKIEYEEKALDL 205 (486)
T ss_pred EEEECCHHHHH-HHHHHhceEEEcCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99998888888 99999999999999999999 9999999999999887776543
No 33
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=2.5e-25 Score=186.52 Aligned_cols=184 Identities=22% Similarity=0.268 Sum_probs=150.8
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc--------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (248)
...+.++|||..|++++||+.+++.|.+++..++.+| ++|+||+|+|||++|+++++.+.|....
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 3457889999999999999999999999999988777 9999999999999999999999874311
Q ss_pred ------------ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 025762 113 ------------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (248)
Q Consensus 113 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~ 180 (248)
+.++.+++.....+.+.+++....+...... +++.|+||||+|.++...++.|++.++
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~----------~~~kvvIIdea~~l~~~~~~~LLk~LE 152 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQK----------GRYRVYIIDEVHMLSIAAFNAFLKTLE 152 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhc----------CCeEEEEEeChhhCCHHHHHHHHHHHh
Confidence 1234555554444556666655444322221 346799999999999999999999999
Q ss_pred hcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 181 TYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 181 ~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+.++.+.+|++++....+. +++.+||..+.|.+++.+++ ..++..++..+++..+++.+.+
T Consensus 153 ep~~~t~~Il~t~~~~kl~-~tl~sR~~~v~f~~l~~~ei----~~~l~~~~~~~g~~i~~~al~~ 213 (397)
T PRK14955 153 EPPPHAIFIFATTELHKIP-ATIASRCQRFNFKRIPLEEI----QQQLQGICEAEGISVDADALQL 213 (397)
T ss_pred cCCCCeEEEEEeCChHHhH-HHHHHHHHHhhcCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 9988999999998888888 99999999999999999999 9999999999998887766543
No 34
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=3.8e-25 Score=193.04 Aligned_cols=185 Identities=24% Similarity=0.296 Sum_probs=156.0
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCC---------------
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~--------------- 110 (248)
....|.++|||..|++++||+.+++.|..++..++.+| +||+||+|+|||++|+.+++.+.|..
T Consensus 3 ~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 3 NYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred hhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 35678999999999999999999999999999988777 79999999999999999999987642
Q ss_pred ----ccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCce
Q 025762 111 ----LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (248)
Q Consensus 111 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~ 186 (248)
..+.++.++++.+..+.+.++..+......... ++++|+||||+|.++...++.|++.||+.+..+
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~----------~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQI----------GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCccc----------CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 123456677776555566666666544332222 346899999999999999999999999999999
Q ss_pred EEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 187 RFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 187 ~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
.+|++|+....+. ++|++||.++.|.+++.+++ ..++..++.++|+..++..+.+
T Consensus 153 ifIL~tt~~~kIl-~tI~SRc~iv~f~~ls~~ei----~~~L~~ia~~egi~i~~~al~~ 207 (614)
T PRK14971 153 IFILATTEKHKIL-PTILSRCQIFDFNRIQVADI----VNHLQYVASKEGITAEPEALNV 207 (614)
T ss_pred EEEEEeCCchhch-HHHHhhhheeecCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999889999 99999999999999999999 9999999999999888765543
No 35
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=4.7e-25 Score=191.50 Aligned_cols=184 Identities=21% Similarity=0.264 Sum_probs=152.7
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
...+.++|||..|++++||+.+++.|.+++..++.+| +||+||+|||||++|+.+++.+.|...
T Consensus 3 ~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred cHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 4457889999999999999999999999999887766 899999999999999999999988431
Q ss_pred -----------cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 025762 112 -----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (248)
Q Consensus 112 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~ 180 (248)
.+.++.++++....+.+.++.....+...... ++++|+||||+|.++...++.|++.++
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~----------~~~KVvIIdEad~Lt~~a~naLLK~LE 152 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQK----------GRYRVYIIDEVHMLSTAAFNAFLKTLE 152 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhc----------CCCEEEEEeChhhcCHHHHHHHHHHHh
Confidence 12245555554445566676665555432222 246899999999999999999999999
Q ss_pred hcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 181 TYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 181 ~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+.++.+.+|++++....+. +++.+||..+.|.+++.+++ ..++..++.++|+..+++.+.+
T Consensus 153 ePp~~tv~IL~t~~~~kLl-~TI~SRc~~vef~~l~~~ei----~~~L~~i~~~egi~I~~eal~~ 213 (620)
T PRK14954 153 EPPPHAIFIFATTELHKIP-ATIASRCQRFNFKRIPLDEI----QSQLQMICRAEGIQIDADALQL 213 (620)
T ss_pred CCCCCeEEEEEeCChhhhh-HHHHhhceEEecCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999998888998 99999999999999999999 9999999999998887766543
No 36
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=5.5e-25 Score=186.31 Aligned_cols=183 Identities=28% Similarity=0.344 Sum_probs=150.8
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
...+.++|+|..|++++||+.++..|..++..++.++ ++|+||+|+|||++|+.+++.+.|...
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 5678999999999999999999999999998887655 899999999999999999999977521
Q ss_pred ----cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceE
Q 025762 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (248)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ 187 (248)
....++++++....+.+.++.....+..... .+++.|+||||+|.++.+.++.|++.+++.++.+.
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~----------~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPS----------KSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhh----------cCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 1234566665554555566554443322111 13468999999999999999999999999988888
Q ss_pred EEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 188 FFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 188 ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
+|++|+....+. +++++||..+.|.+++.+++ ..++..++.++|++.++..+.
T Consensus 154 ~Il~t~~~~kl~-~tI~sRc~~v~f~~l~~~el----~~~L~~~~~~eg~~i~~~al~ 206 (451)
T PRK06305 154 FFLATTEIHKIP-GTILSRCQKMHLKRIPEETI----IDKLALIAKQEGIETSREALL 206 (451)
T ss_pred EEEEeCChHhcc-hHHHHhceEEeCCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 999999889999 99999999999999999999 999999999999888776554
No 37
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=5.5e-25 Score=190.04 Aligned_cols=184 Identities=22% Similarity=0.282 Sum_probs=151.7
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
+..+..+|||..|++++||+.++..|..++..++.+| ++|+||+|+|||++|+++++.+.|...
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 3467889999999999999999999999999887776 889999999999999999999977521
Q ss_pred ---cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...+++++++....+.+.++........... .++++|+||||+|.++...++.|++.+++.+..+.+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~----------~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vf 152 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPA----------SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVF 152 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchh----------cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEE
Confidence 1234555655444445555554433322211 234689999999999999999999999999999999
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|++|+....+. +++++||..+.|.+++.+++ ..++..++..+++..++.++.+
T Consensus 153 I~~tte~~kL~-~tI~SRc~~~~f~~l~~~el----~~~L~~i~~~egi~id~eAl~l 205 (563)
T PRK06647 153 IFATTEVHKLP-ATIKSRCQHFNFRLLSLEKI----YNMLKKVCLEDQIKYEDEALKW 205 (563)
T ss_pred EEecCChHHhH-HHHHHhceEEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99999888898 99999999999999999999 9999999999999988877654
No 38
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=7.1e-25 Score=191.31 Aligned_cols=183 Identities=25% Similarity=0.334 Sum_probs=152.7
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCC-CCeEEEEcCCCCcHHHHHHHHHHHhcCCCc--------------
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~-------------- 111 (248)
...||.++|+|..|++++|++.++..|..++..++ .+++||+||+|+|||++|+++++.+.|...
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 35689999999999999999999999999998875 467999999999999999999999977431
Q ss_pred ------cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCc
Q 025762 112 ------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185 (248)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~ 185 (248)
.+.++++++.......+.+++.+........ .++++|+||||+|.|+.+.++.|++.+|+.+..
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~----------~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV----------QARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh----------cCCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 1224556666555566677776654432221 134679999999999999999999999999999
Q ss_pred eEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 186 TRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
+.+|++|++...+. +++++||..+.|.+++.+++ ..++..++.++++..++..+
T Consensus 152 tvfIL~t~~~~~ll-pTIrSRc~~~~f~~l~~~ei----~~~L~~ia~kegi~is~~al 205 (620)
T PRK14948 152 VVFVLATTDPQRVL-PTIISRCQRFDFRRIPLEAM----VQHLSEIAEKESIEIEPEAL 205 (620)
T ss_pred eEEEEEeCChhhhh-HHHHhheeEEEecCCCHHHH----HHHHHHHHHHhCCCCCHHHH
Confidence 99999999888898 99999999999999999999 99999999999988776654
No 39
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.93 E-value=1.6e-24 Score=177.78 Aligned_cols=186 Identities=47% Similarity=0.714 Sum_probs=152.5
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
...+|.++|+|..|++++|++.++..+..++..+..++++|+||||+|||++++++++.+.+... ...+++++.++...
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~~~~ 81 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASDERG 81 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEeccccccc
Confidence 35689999999999999999999999999998888889999999999999999999999855442 44566666665554
Q ss_pred hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhh
Q 025762 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r 206 (248)
...+...+..+...... ....+++++|||+|.++...++.|+..++..+..+.+|+++|....+. +++.+|
T Consensus 82 ~~~~~~~i~~~~~~~~~--------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~-~~l~sr 152 (319)
T PRK00440 82 IDVIRNKIKEFARTAPV--------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKII-DPIQSR 152 (319)
T ss_pred hHHHHHHHHHHHhcCCC--------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccc-hhHHHH
Confidence 44444444443322111 112357999999999999999999999999888889999999888888 999999
Q ss_pred hheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 207 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+..+.|.+++.+++ ..++..++.++++..++..+.+
T Consensus 153 ~~~~~~~~l~~~ei----~~~l~~~~~~~~~~i~~~al~~ 188 (319)
T PRK00440 153 CAVFRFSPLKKEAV----AERLRYIAENEGIEITDDALEA 188 (319)
T ss_pred hheeeeCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999 9999999999999887776654
No 40
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.92 E-value=1.5e-24 Score=180.53 Aligned_cols=182 Identities=26% Similarity=0.329 Sum_probs=148.1
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc---------------
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------- 112 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~--------------- 112 (248)
+||.++|+|..|++++|++..++.|..++..++.++ ++|+||||+|||++|+.+++.+.|....
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999999999999998887665 7899999999999999999998765321
Q ss_pred ---ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 025762 113 ---KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (248)
Q Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii 189 (248)
...++++++.+......++........... .+++.|++|||+|.++...++.|++.+++.+..+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~----------~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPS----------SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcc----------cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 234566666544444445555444322111 1345799999999999999999999999988888889
Q ss_pred EEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 190 FICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 190 ~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
+++++...+. +++.+||..+.|.+++.+++ ..++..++.++|++.++..+.
T Consensus 152 l~~~~~~~l~-~~l~sr~~~~~~~~~~~~~l----~~~l~~~~~~~g~~i~~~a~~ 202 (355)
T TIGR02397 152 LATTEPHKIP-ATILSRCQRFDFKRIPLEDI----VERLKKILDKEGIKIEDEALE 202 (355)
T ss_pred EEeCCHHHHH-HHHHhheeEEEcCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 9999888888 99999999999999999999 999999999999887766543
No 41
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.92 E-value=4.4e-24 Score=176.49 Aligned_cols=186 Identities=31% Similarity=0.429 Sum_probs=142.0
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch--
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI-- 127 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~-- 127 (248)
+|.++|+|..|++++|++.+++.|.+++..+..++++|+||||||||++|+++++.+.+.. ....+..+++.+....
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~ 82 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGK 82 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcch
Confidence 7999999999999999999999999999888878999999999999999999999986543 1223455555432100
Q ss_pred HH--------------------HHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceE
Q 025762 128 NV--------------------VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (248)
Q Consensus 128 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ 187 (248)
.. ....+........... -.....+++||||++.++...++.|...++..+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~ 157 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYR-----PLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCR 157 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcC-----CCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCe
Confidence 00 0001111100000000 0012356999999999999999999999998888888
Q ss_pred EEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 188 FFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 188 ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+|++++.+..+. +++.+||..+.|.|++.+++ ..++..++.++++..++..+.+
T Consensus 158 ~Il~~~~~~~~~-~~L~sr~~~v~~~~~~~~~~----~~~l~~~~~~~~~~~~~~al~~ 211 (337)
T PRK12402 158 FIIATRQPSKLI-PPIRSRCLPLFFRAPTDDEL----VDVLESIAEAEGVDYDDDGLEL 211 (337)
T ss_pred EEEEeCChhhCc-hhhcCCceEEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 999998777888 99999999999999999999 9999999999999877766543
No 42
>PRK04195 replication factor C large subunit; Provisional
Probab=99.92 E-value=2.2e-24 Score=185.26 Aligned_cols=177 Identities=28% Similarity=0.327 Sum_probs=143.4
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcCC----CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~----~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
.+|.++|+|..+++++|++.++..+..|+.... .++++|+||||||||++|+++++.+ +..++++++++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------~~~~ielnasd~ 75 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------GWEVIELNASDQ 75 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEccccc
Confidence 479999999999999999999999999886532 5689999999999999999999998 567888888887
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH----HHHHHHHHHHhhcCCceEEEEEeCCCcccCh
Q 025762 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYSKVTRFFFICNYISRCTF 200 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~----~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~ 200 (248)
.....+.............. ..++.||||||+|.+.. ..++.|+++++.. ...+|++||....+.
T Consensus 76 r~~~~i~~~i~~~~~~~sl~--------~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~- 144 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLF--------GARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPS- 144 (482)
T ss_pred ccHHHHHHHHHHhhccCccc--------CCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccc-
Confidence 76665555544432211100 02467999999999975 5678899998853 345889999888887
Q ss_pred H-HHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 201 S-ALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 201 ~-~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
. .++++|..+.|.+++.+++ ..++..++..+++..++..+.+
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i----~~~L~~i~~~egi~i~~eaL~~ 187 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSI----VPVLKRICRKEGIECDDEALKE 187 (482)
T ss_pred hhhHhccceEEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 5 8999999999999999999 9999999999999988776543
No 43
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.92 E-value=8.3e-24 Score=173.29 Aligned_cols=185 Identities=29% Similarity=0.330 Sum_probs=142.4
Q ss_pred cccCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEE-EcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF-YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill-~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
++....+|.++|+|+.+++++|++.....+..++..+..+++++ +||||+|||++|+++++.+ ...+..+++.
T Consensus 4 ~~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~------~~~~~~i~~~ 77 (316)
T PHA02544 4 VNPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV------GAEVLFVNGS 77 (316)
T ss_pred cCCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CccceEeccC
Confidence 34667899999999999999999999999999998887777666 8999999999999999987 3456667776
Q ss_pred CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhcCCceEEEEEeCCCcccChH
Q 025762 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201 (248)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l-~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~ 201 (248)
+.. ...++..+..+...... .+.++++||||+|.+ ..+.++.|..+++..+..+.+|++||....+. +
T Consensus 78 ~~~-~~~i~~~l~~~~~~~~~---------~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~-~ 146 (316)
T PHA02544 78 DCR-IDFVRNRLTRFASTVSL---------TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGII-E 146 (316)
T ss_pred ccc-HHHHHHHHHHHHHhhcc---------cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhch-H
Confidence 632 33333333332221110 123579999999999 67788889889999888889999999998998 9
Q ss_pred HHHhhhheeeeccCCccccchHH---HHHHHHHHhhcCccccCceee
Q 025762 202 ALFSFLLFFMFFSLLDQISFDKE---YIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 202 ~l~~r~~~i~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~l~ 245 (248)
++++||..+.|+.|+.++..+++ ...+..++.+++++.+++.+.
T Consensus 147 ~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~ 193 (316)
T PHA02544 147 PLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLA 193 (316)
T ss_pred HHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999888773222 234455677788887765543
No 44
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=1.2e-23 Score=175.58 Aligned_cols=185 Identities=23% Similarity=0.306 Sum_probs=149.0
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHhcCCCc------cccceEEe
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPEL------YKSRVLEL 119 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~-~ill~Gp~G~GKT~la~~la~~~~~~~~------~~~~~~~~ 119 (248)
...+|.++|+|..|++++|++.+++.+.+.+..+..+ +++|+||||+|||++|+++++.+.+... ....++++
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 4568999999999999999999999999999887654 6999999999999999999999866432 12344555
Q ss_pred ccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccC
Q 025762 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCT 199 (248)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~ 199 (248)
+.........++.........+. .+++++++|||+|.++...++.|++.+++.+..+.+|++++....+.
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p~----------~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPPQ----------TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhccc----------cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 54444444555555443321111 12457999999999999999999999999888888899998888998
Q ss_pred hHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 200 FSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 200 ~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+++.+||..+.|.+++.+++ ..++..++.++|++.+++.+.+
T Consensus 153 -~~l~sr~~~v~~~~~~~~~l----~~~l~~~~~~~g~~i~~~al~~ 194 (367)
T PRK14970 153 -PTILSRCQIFDFKRITIKDI----KEHLAGIAVKEGIKFEDDALHI 194 (367)
T ss_pred -HHHHhcceeEecCCccHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999 9999999999999887776544
No 45
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=1.3e-23 Score=183.81 Aligned_cols=183 Identities=23% Similarity=0.277 Sum_probs=149.4
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc---------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (248)
.+.|.++|+|..|++++||+.+++.|..++..++..| +||+||+|+|||++|+.+++.+.|...
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 4457899999999999999999999999998877655 699999999999999999999876431
Q ss_pred ----cccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceE
Q 025762 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (248)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ 187 (248)
.+.++++++.......+.+++.......... .++++|+||||+|.|+.+.++.|++.+++.+..+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~----------~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv 152 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPA----------LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAI 152 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcc----------cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeE
Confidence 1124556666555555666655443322111 23468999999999999999999999999988899
Q ss_pred EEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 188 FFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 188 ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
||++++....+. +++.+||..+.|.+++.+++ ..++..++.++|+..+++.+.
T Consensus 153 ~Il~t~~~~kll-~tI~SR~~~i~f~~l~~~el----~~~L~~~a~~egl~i~~eal~ 205 (585)
T PRK14950 153 FILATTEVHKVP-ATILSRCQRFDFHRHSVADM----AAHLRKIAAAEGINLEPGALE 205 (585)
T ss_pred EEEEeCChhhhh-HHHHhccceeeCCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 999999888888 99999999999999999999 999999999999887776543
No 46
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.91 E-value=1.4e-23 Score=160.51 Aligned_cols=183 Identities=32% Similarity=0.489 Sum_probs=152.9
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc------------------
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL------------------ 111 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~------------------ 111 (248)
.|.++|+|++++.+.++++....+......+..+|++++||+|+||.|.+.++.+++.+.+.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 59999999999999999999999988888777899999999999999999999999976542
Q ss_pred -----cccceEEeccCCCcchH--HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCC
Q 025762 112 -----YKSRVLELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184 (248)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~ 184 (248)
.+...++++++|....+ .+++.++.++....- ....+..++|++|.|+|.+..++|.+|.+.||.+..
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qi-----e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-----ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcch-----hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 13356777777764433 355555554433221 111223578999999999999999999999999999
Q ss_pred ceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 185 VTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 185 ~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
.+++|++||..+++. ++++|||..++.+.|+++|+ ..++..++.+|++.....
T Consensus 157 ~~RlIl~cns~SriI-epIrSRCl~iRvpaps~eeI----~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 157 NCRLILVCNSTSRII-EPIRSRCLFIRVPAPSDEEI----TSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred CceEEEEecCcccch-hHHhhheeEEeCCCCCHHHH----HHHHHHHHHHhcccCcHH
Confidence 999999999999999 99999999999999999999 999999999999986643
No 47
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.90 E-value=4e-24 Score=166.56 Aligned_cols=188 Identities=42% Similarity=0.533 Sum_probs=165.7
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
....||.++|+|..+.+++++++.+..+.+.....+.+|+|++||||+|||+...+.++.+.+...+...+.+++.++.+
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 56689999999999999999999999999998888888999999999999999999999998876666678889999999
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHh
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFS 205 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~ 205 (248)
+.+.++..+..+........+.. .+.+.++|+||+|.+..+.|++|.+.++.+..+.+|.+++|.+..+. +++.+
T Consensus 106 gid~vr~qi~~fast~~~~~fst----~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~-pa~qs 180 (360)
T KOG0990|consen 106 GIDPVRQQIHLFASTQQPTTYST----HAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIH-PAQQS 180 (360)
T ss_pred CCcchHHHHHHHHhhccceeccc----cCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcC-chhhc
Confidence 99988888887665433211111 23467999999999999999999999999999999999999999999 99999
Q ss_pred hhheeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 206 FLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 206 r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
||..+.|.|++.... ..++.+++..+..+..+.
T Consensus 181 Rctrfrf~pl~~~~~----~~r~shi~e~e~~~~~~~ 213 (360)
T KOG0990|consen 181 RCTRFRFAPLTMAQQ----TERQSHIRESEQKETNPE 213 (360)
T ss_pred ccccCCCCCCChhhh----hhHHHHHHhcchhhcCHH
Confidence 999999999999999 999999999998876654
No 48
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.5e-22 Score=154.36 Aligned_cols=166 Identities=18% Similarity=0.160 Sum_probs=130.3
Q ss_pred hhhccCCCccccccccHHHHHHHHHHHHcC-----CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~-----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
.-...||+.|++++||+.+++.|.-.+... ..-|++|+||||.||||||..+|+++ +..+.....+...
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em------gvn~k~tsGp~le 89 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL------GVNLKITSGPALE 89 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh------cCCeEeccccccc
Confidence 344678999999999999999887666543 34479999999999999999999999 4444444444433
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC------------------CceE
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTR 187 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------------------~~~~ 187 (248)
....+-..+..+ .+++||||||||++++.+-+.|+.+||++. ++..
T Consensus 90 K~gDlaaiLt~L----------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 KPGDLAAILTNL----------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ChhhHHHHHhcC----------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 333343444332 236899999999999999999999999875 2223
Q ss_pred EEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCce
Q 025762 188 FFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLS 243 (248)
Q Consensus 188 ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (248)
+|-+|+....+. .+|++||. +.++..|+.+|+ ..++.+-+...+++.+++.
T Consensus 154 LIGATTr~G~lt-~PLrdRFGi~~rlefY~~~eL----~~Iv~r~a~~l~i~i~~~~ 205 (332)
T COG2255 154 LIGATTRAGMLT-NPLRDRFGIIQRLEFYTVEEL----EEIVKRSAKILGIEIDEEA 205 (332)
T ss_pred Eeeecccccccc-chhHHhcCCeeeeecCCHHHH----HHHHHHHHHHhCCCCChHH
Confidence 566778888898 99999998 588999999999 9999999999888877653
No 49
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=6.3e-22 Score=164.37 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=123.9
Q ss_pred ccccccccHHHHHHHHHHHHcCC----------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCc-----------------
Q 025762 59 QVKDVAHQEEVVRVLTNTLETAN----------CPHMLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~----------~~~ill~Gp~G~GKT~la~~la~~~~~~~~----------------- 111 (248)
.|++++||+.+++.|.+++..++ .+.++|+||+|+|||++|+.+++.+.|...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 57889999999999999998864 445999999999999999999999877531
Q ss_pred cccceEEeccC-CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 025762 112 YKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (248)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~ 190 (248)
...++..+.+. .....+.++........... .+++.|+||||+|.|+...++.|++.||+.+..+.+|+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~----------~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPS----------TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcc----------cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 12233334332 22445556655544433221 23467999999999999999999999999999999999
Q ss_pred EeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHH
Q 025762 191 ICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 191 ~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
+|+.+..++ ++++|||..+.|.+|+.+++ ..++.
T Consensus 153 ~a~~~~~ll-pTIrSRc~~i~f~~~~~~~i----~~~L~ 186 (394)
T PRK07940 153 CAPSPEDVL-PTIRSRCRHVALRTPSVEAV----AEVLV 186 (394)
T ss_pred EECChHHCh-HHHHhhCeEEECCCCCHHHH----HHHHH
Confidence 999999999 99999999999999999999 66664
No 50
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.89 E-value=1.4e-21 Score=144.12 Aligned_cols=141 Identities=34% Similarity=0.488 Sum_probs=108.7
Q ss_pred ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc-----------------ccceEEeccCCC--
Q 025762 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-----------------KSRVLELNASDD-- 124 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-----------------~~~~~~~~~~~~-- 124 (248)
||+.+++.|...+..++.+| ++|+||+|+||+++|.++++.+.|.... ..++..+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78999999999999998777 7999999999999999999999876543 446677766554
Q ss_pred -cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHH
Q 025762 125 -RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSAL 203 (248)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l 203 (248)
...+.++.....+...... ..++|+||||+|.|+.+.+++|++.||+++..+.+|++|+....+. +++
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~----------~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il-~TI 149 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSE----------GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL-PTI 149 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TT----------SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS--HHH
T ss_pred hhhHHHHHHHHHHHHHHHhc----------CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh-HHH
Confidence 5566666555554332222 3468999999999999999999999999999999999999999999 999
Q ss_pred HhhhheeeeccCC
Q 025762 204 FSFLLFFMFFSLL 216 (248)
Q Consensus 204 ~~r~~~i~~~~~~ 216 (248)
+|||..+.|.+++
T Consensus 150 ~SRc~~i~~~~ls 162 (162)
T PF13177_consen 150 RSRCQVIRFRPLS 162 (162)
T ss_dssp HTTSEEEEE----
T ss_pred HhhceEEecCCCC
Confidence 9999999999874
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.88 E-value=3.1e-22 Score=168.99 Aligned_cols=161 Identities=26% Similarity=0.305 Sum_probs=125.4
Q ss_pred chhhccCCCccccccccHHHHHH---HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRV---LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~---l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
||.+++||..+++++|++..+.. |..++.....++++|+||||||||++|+++++.. ...+..+++... +
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~------~~~~~~l~a~~~-~ 73 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT------DAPFEALSAVTS-G 73 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecccc-c
Confidence 78999999999999999999766 8999988888899999999999999999999987 445666666543 3
Q ss_pred hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe--CCCcccChHHHH
Q 025762 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRCTFSALF 204 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~--n~~~~~~~~~l~ 204 (248)
...++..+........ ..++.+|||||+|.++...++.|+..++.. ...+|.++ |....+. ++++
T Consensus 74 ~~~ir~ii~~~~~~~~----------~g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n~~~~l~-~aL~ 140 (413)
T PRK13342 74 VKDLREVIEEARQRRS----------AGRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTENPSFEVN-PALL 140 (413)
T ss_pred HHHHHHHHHHHHHhhh----------cCCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCChhhhcc-HHHh
Confidence 3334444433322111 123579999999999999999999999873 33344443 4456788 9999
Q ss_pred hhhheeeeccCCccccchHHHHHHHHHHhh
Q 025762 205 SFLLFFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 205 ~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
+||..+.|.+++.+++ ..++.+.+..
T Consensus 141 SR~~~~~~~~ls~e~i----~~lL~~~l~~ 166 (413)
T PRK13342 141 SRAQVFELKPLSEEDI----EQLLKRALED 166 (413)
T ss_pred ccceeeEeCCCCHHHH----HHHHHHHHHH
Confidence 9999999999999999 7777777655
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.88 E-value=7.9e-22 Score=162.00 Aligned_cols=171 Identities=18% Similarity=0.124 Sum_probs=129.9
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
..|-.+++|..|++++|++..++.+..++.. ....+++|+||||||||++|+++++.+. ..+.......
T Consensus 13 ~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~------~~~~~~~~~~ 86 (328)
T PRK00080 13 DEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG------VNIRITSGPA 86 (328)
T ss_pred chhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC------CCeEEEeccc
Confidence 3456789999999999999999888777653 2345899999999999999999999983 2333333332
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC------------------Cc
Q 025762 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KV 185 (248)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------------------~~ 185 (248)
......+...... ....++|+|||+|.++....+.|+..++++. ..
T Consensus 87 ~~~~~~l~~~l~~----------------l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 87 LEKPGDLAAILTN----------------LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ccChHHHHHHHHh----------------cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 2222222222211 1124699999999999888888988888653 23
Q ss_pred eEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 186 TRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
..+|.+||....+. +++++||. .+.|.+++.+++ ..++++.+...++..+++.+.+
T Consensus 151 ~~li~at~~~~~l~-~~L~sRf~~~~~l~~~~~~e~----~~il~~~~~~~~~~~~~~~~~~ 207 (328)
T PRK00080 151 FTLIGATTRAGLLT-SPLRDRFGIVQRLEFYTVEEL----EKIVKRSARILGVEIDEEGALE 207 (328)
T ss_pred ceEEeecCCcccCC-HHHHHhcCeeeecCCCCHHHH----HHHHHHHHHHcCCCcCHHHHHH
Confidence 45788888888888 99999985 689999999999 9999999999999888776543
No 53
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.88 E-value=8.5e-22 Score=170.28 Aligned_cols=193 Identities=22% Similarity=0.200 Sum_probs=142.1
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC----CccccceEEeccCC
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASD 123 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~----~~~~~~~~~~~~~~ 123 (248)
..||.+++||..|++++|++..++.+...+......+++|+||||||||++|+++.+.+... ......++++++..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 45999999999999999999999999988877778899999999999999999998865321 11135678888753
Q ss_pred Ccc-hHHHH-HHHHHhHhh-------hhc---CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC--------
Q 025762 124 DRG-INVVR-TKIKTFAAV-------AVG---SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------- 183 (248)
Q Consensus 124 ~~~-~~~~~-~~~~~~~~~-------~~~---~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------- 183 (248)
... ...+. ..+...... ... .....+....+++++|+|||++.+++..++.|+++++++.
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccc
Confidence 211 11111 111100000 000 0112344556778999999999999999999999998642
Q ss_pred --------------------CceEEEEEe-CCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 184 --------------------KVTRFFFIC-NYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 184 --------------------~~~~ii~~~-n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
...++|++| +.+..++ +++++||..+.|.+++.+++ ..+++..+.+.++..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~-paLrsR~~~I~f~pL~~eei----~~Il~~~a~k~~i~is~~ 286 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIP-PALRSRCVEIFFRPLLDEEI----KEIAKNAAEKIGINLEKH 286 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCC-hHHhhhhheeeCCCCCHHHH----HHHHHHHHHHcCCCcCHH
Confidence 123555555 5678899 99999999999999999999 999999999999887766
Q ss_pred eee
Q 025762 243 SLT 245 (248)
Q Consensus 243 ~l~ 245 (248)
.+.
T Consensus 287 al~ 289 (531)
T TIGR02902 287 ALE 289 (531)
T ss_pred HHH
Confidence 554
No 54
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=8.4e-21 Score=155.69 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=127.2
Q ss_pred cCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc---------------------
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------------- 112 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~--------------------- 112 (248)
..|..+..++|++.+...|..++..++.+| ++|+||+|+|||++|..+++.+.|....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 578899999999999999999999998777 9999999999999999999999773100
Q ss_pred ---ccceEEeccC---------CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 025762 113 ---KSRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (248)
Q Consensus 113 ---~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~ 180 (248)
+.++..+..+ .....+.++.....+.... ..+.+.|+||||+|.|+...+++|++.+|
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~----------~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS----------GDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc----------ccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 0012222111 1122333443333222211 12346799999999999999999999999
Q ss_pred hcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHh
Q 025762 181 TYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 181 ~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
+.+..+.+|++|+.+..+. ++++|||..+.|.|++.+++ ..++...+.
T Consensus 167 Epp~~~~fiLit~~~~~ll-ptIrSRc~~i~l~pl~~~~~----~~~L~~~~~ 214 (351)
T PRK09112 167 EPPARALFILISHSSGRLL-PTIRSRCQPISLKPLDDDEL----KKALSHLGS 214 (351)
T ss_pred cCCCCceEEEEECChhhcc-HHHHhhccEEEecCCCHHHH----HHHHHHhhc
Confidence 9988899999999999999 99999999999999999999 888876543
No 55
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=7.2e-21 Score=156.87 Aligned_cols=162 Identities=22% Similarity=0.264 Sum_probs=127.3
Q ss_pred cCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc---------------------
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------------- 112 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~--------------------- 112 (248)
.+|..+.+++||+.+++.|.+++..++.+| ++|+||+|+||+++|.++++.+.|....
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 578899999999999999999999998777 9999999999999999999999775421
Q ss_pred -------ccceEEeccC---------CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHH
Q 025762 113 -------KSRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (248)
Q Consensus 113 -------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~ 176 (248)
..++..+.+. .....+.++.....+..... ...+.|+||||+|.++...++.|+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~----------~~~~kVviIDead~m~~~aanaLL 162 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAA----------EGGWRVVIVDTADEMNANAANALL 162 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcc----------cCCCEEEEEechHhcCHHHHHHHH
Confidence 1123333221 11233444444433322211 234579999999999999999999
Q ss_pred HHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHH
Q 025762 177 RTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYA 231 (248)
Q Consensus 177 ~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~ 231 (248)
+.+++.+..+.+|++|+.+..+. ++++|||..+.|.+++.+++ ...+...
T Consensus 163 K~LEepp~~~~~IL~t~~~~~ll-pti~SRc~~i~l~~l~~~~i----~~~L~~~ 212 (365)
T PRK07471 163 KVLEEPPARSLFLLVSHAPARLL-PTIRSRCRKLRLRPLAPEDV----IDALAAA 212 (365)
T ss_pred HHHhcCCCCeEEEEEECCchhch-HHhhccceEEECCCCCHHHH----HHHHHHh
Confidence 99999988899999999998998 99999999999999999999 7776553
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.87 E-value=1.4e-21 Score=172.95 Aligned_cols=177 Identities=23% Similarity=0.277 Sum_probs=129.7
Q ss_pred CccchhhccCCCccccccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
...||.++++|..+++++|++..+ ..+.+.+..++.++++|+||||||||++|+++++.. ...+..+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~------~~~f~~lna~~ 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT------RAHFSSLNAVL 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh------cCcceeehhhh
Confidence 345999999999999999999988 467788888888899999999999999999999987 33445555543
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe--CCCcccChH
Q 025762 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRCTFS 201 (248)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~--n~~~~~~~~ 201 (248)
. +...++..+......... ..++.+|||||+|.++...++.|+..++.. ...+|.++ |+...+. +
T Consensus 88 ~-~i~dir~~i~~a~~~l~~---------~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~-~ 154 (725)
T PRK13341 88 A-GVKDLRAEVDRAKERLER---------HGKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVN-K 154 (725)
T ss_pred h-hhHHHHHHHHHHHHHhhh---------cCCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhh-h
Confidence 2 222233333322111110 113469999999999999999999988863 23333333 4446688 9
Q ss_pred HHHhhhheeeeccCCccccchHHHHHHHHHHh-------hcCccccCceeee
Q 025762 202 ALFSFLLFFMFFSLLDQISFDKEYIRIIYAST-------LKFLEGFGLSLTY 246 (248)
Q Consensus 202 ~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~l~~ 246 (248)
++.|||..+.|+|++.+++ ..++++++. .+++..+++.+.+
T Consensus 155 aL~SR~~v~~l~pLs~edi----~~IL~~~l~~~~~~~g~~~v~I~deaL~~ 202 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDL----HQLLKRALQDKERGYGDRKVDLEPEAEKH 202 (725)
T ss_pred HhhccccceecCCCCHHHH----HHHHHHHHHHHHhhcCCcccCCCHHHHHH
Confidence 9999999999999999999 888888776 4566666665543
No 57
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=8.8e-21 Score=153.58 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=124.9
Q ss_pred ccccccccHHHHHHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHhcCCC------------ccccceEEeccCC--
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPE------------LYKSRVLELNASD-- 123 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~------------~~~~~~~~~~~~~-- 123 (248)
.|++++||+.+++.|.+.+..++. +.++|+||+|+||+++|.++++.+.|.. ....++..+.+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 478899999999999999988874 6699999999999999999999997764 1122333333210
Q ss_pred ---------------------CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc
Q 025762 124 ---------------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (248)
Q Consensus 124 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~ 182 (248)
....+.+++....+..... .+.++|+|||++|.|+...+|+|++.+|++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~----------~~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPL----------EAPRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcc----------cCCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 1112233333322222111 234789999999999999999999999998
Q ss_pred CCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcC
Q 025762 183 SKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 183 ~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (248)
+ .+.||++|+.+..+. ++++|||..+.|.+++.+++ ..+|......++
T Consensus 152 p-~~~fILi~~~~~~Ll-~TI~SRcq~i~f~~l~~~~~----~~~L~~~~~~~~ 199 (314)
T PRK07399 152 G-NGTLILIAPSPESLL-PTIVSRCQIIPFYRLSDEQL----EQVLKRLGDEEI 199 (314)
T ss_pred C-CCeEEEEECChHhCc-HHHHhhceEEecCCCCHHHH----HHHHHHhhcccc
Confidence 8 778999999999999 99999999999999999999 888877655443
No 58
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.86 E-value=3.1e-21 Score=153.12 Aligned_cols=170 Identities=25% Similarity=0.310 Sum_probs=131.8
Q ss_pred cccCccchhhccCCCccccccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEec
Q 025762 44 VLQSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (248)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (248)
++....|+.++++|+.+++++||+..+ .-|...+.+++.++++|+||||||||+||+.++....... ..++++.
T Consensus 121 ~~~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelS 197 (554)
T KOG2028|consen 121 QMLQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELS 197 (554)
T ss_pred HHhccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEe
Confidence 335567999999999999999999887 4667778889999999999999999999999999875442 4677776
Q ss_pred cCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe--CCCccc
Q 025762 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRC 198 (248)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~--n~~~~~ 198 (248)
.... ....++..+......... ..++.||||||+|+++..+|+.++..+|.+. ..+|-+| |+.+.+
T Consensus 198 At~a-~t~dvR~ife~aq~~~~l---------~krkTilFiDEiHRFNksQQD~fLP~VE~G~--I~lIGATTENPSFql 265 (554)
T KOG2028|consen 198 ATNA-KTNDVRDIFEQAQNEKSL---------TKRKTILFIDEIHRFNKSQQDTFLPHVENGD--ITLIGATTENPSFQL 265 (554)
T ss_pred cccc-chHHHHHHHHHHHHHHhh---------hcceeEEEeHHhhhhhhhhhhcccceeccCc--eEEEecccCCCccch
Confidence 6553 344556655554333222 1245799999999999999999998888754 2233333 788999
Q ss_pred ChHHHHhhhheeeeccCCccccchHHHHHHHHHHh
Q 025762 199 TFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 199 ~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
. .+|+|||.+|.+++++.+.+ ..+|.+...
T Consensus 266 n-~aLlSRC~VfvLekL~~n~v----~~iL~raia 295 (554)
T KOG2028|consen 266 N-AALLSRCRVFVLEKLPVNAV----VTILMRAIA 295 (554)
T ss_pred h-HHHHhccceeEeccCCHHHH----HHHHHHHHH
Confidence 9 99999999999999999999 777776433
No 59
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.86 E-value=6.6e-21 Score=155.41 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=120.9
Q ss_pred CccccccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHH
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (248)
+.|++++|+++.++.|..++.. ....+++|+||||||||++|+++++.+. ..+.............+..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~------~~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG------VNLKITSGPALEKPGDLAA 74 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeccchhcCchhHHH
Confidence 3688999999999999888763 3456799999999999999999999983 2333333222222222222
Q ss_pred HHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC------------------CceEEEEEeCC
Q 025762 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRFFFICNY 194 (248)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------------------~~~~ii~~~n~ 194 (248)
.+... ...++|+|||++.++...++.|+.+++++. ....+|.+||.
T Consensus 75 ~l~~~----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 75 ILTNL----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHHhc----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 22111 123699999999999999999999887554 22457777888
Q ss_pred CcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 195 ISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 195 ~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
...+. +++++||. .+.|.+++.+++ .++++..+...++..+++.+.
T Consensus 139 ~~~l~-~~l~sR~~~~~~l~~l~~~e~----~~il~~~~~~~~~~~~~~al~ 185 (305)
T TIGR00635 139 AGMLT-SPLRDRFGIILRLEFYTVEEL----AEIVSRSAGLLNVEIEPEAAL 185 (305)
T ss_pred ccccC-HHHHhhcceEEEeCCCCHHHH----HHHHHHHHHHhCCCcCHHHHH
Confidence 88888 99999996 589999999999 999999999888888777654
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=2.5e-20 Score=152.21 Aligned_cols=157 Identities=21% Similarity=0.298 Sum_probs=125.6
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc--cccceEEeccC--CCcchHHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNAS--DDRGINVVRTK 133 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~ 133 (248)
.|++++||+.+++.|..++..++.+| ++|+||+|+|||++|+++++.+.|... ...++..+.+. .....+.+++.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 47889999999999999999887776 589999999999999999999877532 22344445442 22445556665
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeec
Q 025762 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFF 213 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~ 213 (248)
...+...+. .++++|+||||+|.++...+++|++.+|+.+..+.+|++|+.+..+. ++++|||..+.|.
T Consensus 82 ~~~~~~~p~----------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll-~TI~SRc~~~~~~ 150 (313)
T PRK05564 82 IEEVNKKPY----------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQIL-DTIKSRCQIYKLN 150 (313)
T ss_pred HHHHhcCcc----------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc-HHHHhhceeeeCC
Confidence 544332221 13468999999999999999999999999999999999999889999 9999999999999
Q ss_pred cCCccccchHHHHHHHH
Q 025762 214 SLLDQISFDKEYIRIIY 230 (248)
Q Consensus 214 ~~~~~~~~~~~~~~l~~ 230 (248)
+++.+++ ...+..
T Consensus 151 ~~~~~~~----~~~l~~ 163 (313)
T PRK05564 151 RLSKEEI----EKFISY 163 (313)
T ss_pred CcCHHHH----HHHHHH
Confidence 9999999 555543
No 61
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=143.01 Aligned_cols=167 Identities=26% Similarity=0.220 Sum_probs=122.3
Q ss_pred ccCCCccccccccHHHHHH---HHHHHHc------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 54 KYRPKQVKDVAHQEEVVRV---LTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~---l~~~l~~------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
......+++++||+++++. |...+.. +.+.|++|+||||||||++|++++.++ ..+++.+.....
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~l 187 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATEL 187 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc------CCceEEechHHH
Confidence 3444578999999998864 3444433 467799999999999999999999999 667777777665
Q ss_pred cchHH--HHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC------------HHHHHHHHHHHhhcC--CceEE
Q 025762 125 RGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETYS--KVTRF 188 (248)
Q Consensus 125 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~------------~~~~~~L~~~l~~~~--~~~~i 188 (248)
.+... ....+..+...... ...+|+||||+|.+. .+..|+|+.-|+... ...++
T Consensus 188 iGehVGdgar~Ihely~rA~~----------~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 188 IGEHVGDGARRIHELYERARK----------AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHhhhHHHHHHHHHHHHHh----------cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 44322 11122222111111 113699999999874 346788888887655 34567
Q ss_pred EEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccC
Q 025762 189 FFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFG 241 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (248)
|.+||.+..++ ++++|||. .|.|.-|+.+|. ..++++.+.+-.++.+-
T Consensus 258 IaaTN~p~~LD-~aiRsRFEeEIEF~LP~~eEr----~~ile~y~k~~Plpv~~ 306 (368)
T COG1223 258 IAATNRPELLD-PAIRSRFEEEIEFKLPNDEER----LEILEYYAKKFPLPVDA 306 (368)
T ss_pred EeecCChhhcC-HHHHhhhhheeeeeCCChHHH----HHHHHHHHHhCCCcccc
Confidence 88899999999 99999998 699999999999 99999998887776543
No 62
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.85 E-value=2.5e-20 Score=159.17 Aligned_cols=181 Identities=25% Similarity=0.326 Sum_probs=146.1
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcC----------------------------------CCCeEEEEcCCCCc
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA----------------------------------NCPHMLFYGPPGTG 94 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~----------------------------------~~~~ill~Gp~G~G 94 (248)
..|.++|+|+.|.++.|++..-+.+..|+..+ ....++|+||||.|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 38999999999999999999999998888642 11139999999999
Q ss_pred HHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHH
Q 025762 95 KTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNA 174 (248)
Q Consensus 95 KT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~ 174 (248)
|||||+.+|+++ +..+++++++|.+....+++.+........... .-.+..+||+||||..+....+.
T Consensus 339 KTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~------adsrP~CLViDEIDGa~~~~Vdv 406 (877)
T KOG1969|consen 339 KTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHSVLD------ADSRPVCLVIDEIDGAPRAAVDV 406 (877)
T ss_pred hhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhccccc------cCCCcceEEEecccCCcHHHHHH
Confidence 999999999999 889999999999998888887766543322210 01234589999999999999999
Q ss_pred HHHHHhhc------CCc---------------eEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHh
Q 025762 175 LRRTMETY------SKV---------------TRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 175 L~~~l~~~------~~~---------------~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
|+.+++.- ++. ..||++||+.+..-.+.|+.-+.++.|.|++++-+ .++|+.||.
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~L----v~RL~~IC~ 482 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRL----VERLNEICH 482 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHH----HHHHHHHHh
Confidence 99988621 111 13999999876655467777788999999999999 999999999
Q ss_pred hcCccccCceee
Q 025762 234 LKFLEGFGLSLT 245 (248)
Q Consensus 234 ~~~~~~~~~~l~ 245 (248)
.|++..+..+|+
T Consensus 483 rE~mr~d~~aL~ 494 (877)
T KOG1969|consen 483 RENMRADSKALN 494 (877)
T ss_pred hhcCCCCHHHHH
Confidence 999998887664
No 63
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=3.4e-20 Score=151.83 Aligned_cols=155 Identities=26% Similarity=0.291 Sum_probs=123.1
Q ss_pred cccccc-cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc------------------ccceEEe
Q 025762 60 VKDVAH-QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLEL 119 (248)
Q Consensus 60 ~~~~~g-~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------------~~~~~~~ 119 (248)
|+.++| |+.+++.|...+..++.+| ++|+||+|+||+++|+.+++.+.|.... ..++..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 667787 9999999999999888777 5999999999999999999999776411 1233333
Q ss_pred ccCC-CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCccc
Q 025762 120 NASD-DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198 (248)
Q Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~ 198 (248)
.... ....+.+++....+..... .+.++|+||||+|.++...+++|++.+|++++.+.+|++|+.+..+
T Consensus 84 ~~~~~~i~id~ir~l~~~~~~~~~----------~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 84 APDGQSIKKDQIRYLKEEFSKSGV----------ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred ccccccCCHHHHHHHHHHHhhCCc----------ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 3322 2344555555554433221 1346799999999999999999999999999999999999999999
Q ss_pred ChHHHHhhhheeeeccCCccccchHHHHHHH
Q 025762 199 TFSALFSFLLFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 199 ~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
. ++++|||..+.|.+++.+++ ..++.
T Consensus 154 l-~TIrSRc~~i~~~~~~~~~~----~~~L~ 179 (329)
T PRK08058 154 L-PTILSRCQVVEFRPLPPESL----IQRLQ 179 (329)
T ss_pred c-HHHHhhceeeeCCCCCHHHH----HHHHH
Confidence 9 99999999999999999999 66664
No 64
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.84 E-value=4.1e-20 Score=152.09 Aligned_cols=152 Identities=37% Similarity=0.487 Sum_probs=122.5
Q ss_pred cccccHHHHHHHHHHHH-cCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc------------------cccceEEecc
Q 025762 62 DVAHQEEVVRVLTNTLE-TANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNA 121 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------------~~~~~~~~~~ 121 (248)
++++++.....+..+.. .++.+| ++|+||||+|||++|.++++.+.|... ...+++++++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 45778888888887777 556778 999999999999999999999976553 3468999999
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChH
Q 025762 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201 (248)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~ 201 (248)
++....+...+.+..+.......+. ..++.|++|||+|.|+.+.+++|++.+|+++..+.||++||.+..+. +
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il-~ 154 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKIL-P 154 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhcc-c
Confidence 9887754444444444443322211 24468999999999999999999999999999999999999999999 9
Q ss_pred HHHhhhheeeeccCCcccc
Q 025762 202 ALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 202 ~l~~r~~~i~~~~~~~~~~ 220 (248)
+++|||..+.|.|++....
T Consensus 155 tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 155 TIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred hhhhcceeeecCCchHHHH
Confidence 9999999999998555444
No 65
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=1.8e-19 Score=145.67 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc------------------cccceEEeccC--CC
Q 025762 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS--DD 124 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------------~~~~~~~~~~~--~~ 124 (248)
+...++.|.+.+..++.+| ++|+||+|+||+++|.++|+.+.|... .+.++..+.+. ..
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 3556778888888877655 779999999999999999999987531 12345555442 23
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHH
Q 025762 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALF 204 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~ 204 (248)
.+.+.+++....+...... ++++|+|||++|.|+...+|+|++.+|+.++.+.||++|+.+..++ ++++
T Consensus 87 I~id~iR~l~~~~~~~~~~----------g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~ll-pTI~ 155 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQ----------GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALL-PTIY 155 (325)
T ss_pred CCHHHHHHHHHHHhhcccc----------CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCc-hHHH
Confidence 5666777665554443332 2468999999999999999999999999999999999999999999 9999
Q ss_pred hhhheeeeccCCccccchHHHHHHHHH
Q 025762 205 SFLLFFMFFSLLDQISFDKEYIRIIYA 231 (248)
Q Consensus 205 ~r~~~i~~~~~~~~~~~~~~~~~l~~~ 231 (248)
|||..+.|.+++.+++ .+.|...
T Consensus 156 SRC~~~~~~~~~~~~~----~~~L~~~ 178 (325)
T PRK06871 156 SRCQTWLIHPPEEQQA----LDWLQAQ 178 (325)
T ss_pred hhceEEeCCCCCHHHH----HHHHHHH
Confidence 9999999999999999 6666553
No 66
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=9.1e-20 Score=145.15 Aligned_cols=169 Identities=18% Similarity=0.130 Sum_probs=114.5
Q ss_pred ccccccccHHHHHHHHHHHHc---------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc-cccceEEeccC
Q 025762 59 QVKDVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNAS 122 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~---------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~-~~~~~~~~~~~ 122 (248)
.+++++|.+.+++.+...... ....|++|+||||||||++|+++++.+...+. ....++.+++.
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 456788988888766533211 13457999999999999999999998743222 22345555554
Q ss_pred CCcchHH--HHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhhcCCceEEEEEe
Q 025762 123 DDRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFIC 192 (248)
Q Consensus 123 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------~~~~~~L~~~l~~~~~~~~ii~~~ 192 (248)
+..+... .......... .+..+||||||+|.+. .+.++.|++.|+.......+|+++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~-------------~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIK-------------KALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HhhhhhccchHHHHHHHHH-------------hccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 4322110 0011111111 1123699999999875 457788999999887776667766
Q ss_pred CCC-----cccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 193 NYI-----SRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 193 n~~-----~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
... ..++ +++.+||. .+.|++++.+++ ..+++..+...++..++..+.
T Consensus 151 ~~~~~~~~~~~~-p~L~sRf~~~i~f~~~~~~el----~~Il~~~~~~~~~~l~~~a~~ 204 (261)
T TIGR02881 151 YSDEMDYFLSLN-PGLRSRFPISIDFPDYTVEEL----MEIAERMVKEREYKLTEEAKW 204 (261)
T ss_pred CcchhHHHHhcC-hHHHhccceEEEECCCCHHHH----HHHHHHHHHHcCCccCHHHHH
Confidence 432 2366 89999995 699999999999 999999998888777666543
No 67
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=3.2e-19 Score=144.04 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=116.7
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc---------------ccceEEe--ccCC----
Q 025762 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY---------------KSRVLEL--NASD---- 123 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~---------------~~~~~~~--~~~~---- 123 (248)
+...++.+...+..++.+| ++|+||+|+||+++|.++++.+.|.... +.++..+ .+.+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 5667888999998888777 9999999999999999999999775411 1234434 2221
Q ss_pred ---CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccCh
Q 025762 124 ---DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTF 200 (248)
Q Consensus 124 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~ 200 (248)
....+.+++....+...... +.++|+|||++|.|+....|+|++.+|+.++++.||++|+.+..+.
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~----------g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL- 157 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQY----------GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP- 157 (319)
T ss_pred ccccccHHHHHHHHHHHhhCccc----------CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc-
Confidence 12344455544443322221 2368999999999999999999999999999999999999999999
Q ss_pred HHHHhhhheeeeccCCccccchHHHHHHH
Q 025762 201 SALFSFLLFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 201 ~~l~~r~~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
++++|||..+.|.+++.+++ ...|.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~----~~~L~ 182 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEA----LAWLL 182 (319)
T ss_pred hHHHhhheEeeCCCcCHHHH----HHHHH
Confidence 99999999999999999999 66665
No 68
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=3.5e-19 Score=145.39 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=121.4
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCC------------------ccccceEEeccCC---
Q 025762 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE------------------LYKSRVLELNASD--- 123 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~------------------~~~~~~~~~~~~~--- 123 (248)
+...++.+.+.+..++.+| ++|+||+|+||+++|.++|+.+.|.. +.+.++..+.+..
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 4566788888888887666 78999999999999999999998742 1233555554432
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHH
Q 025762 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSAL 203 (248)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l 203 (248)
....+.+++....+...... +.++|+|||++|.|+....|+|++.+|+.++++.||++|+.+..++ +++
T Consensus 87 ~I~idqiR~l~~~~~~~~~~----------g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL-pTI 155 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARL----------GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLL-ATL 155 (334)
T ss_pred cCCHHHHHHHHHHHhhcccc----------CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh-HHH
Confidence 35677777776665544332 3468999999999999999999999999999999999999999999 999
Q ss_pred HhhhheeeeccCCccccchHHHHHHH
Q 025762 204 FSFLLFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 204 ~~r~~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
+|||+.+.|.+++.+++ ...|.
T Consensus 156 rSRCq~~~~~~~~~~~~----~~~L~ 177 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYA----LTWLS 177 (334)
T ss_pred HhccccccCCCCCHHHH----HHHHH
Confidence 99999999999999998 66554
No 69
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=5.1e-19 Score=144.04 Aligned_cols=136 Identities=22% Similarity=0.219 Sum_probs=109.3
Q ss_pred CCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc------------------cccceEEeccC---CCcchHHHHHHHHHh
Q 025762 80 ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS---DDRGINVVRTKIKTF 137 (248)
Q Consensus 80 ~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~ 137 (248)
++.+| ++|+||+|+|||++|.++|+.+.|... .+.++..+.+. .....+.+++....+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 54444 899999999999999999999987531 12345555443 235667777766655
Q ss_pred HhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCc
Q 025762 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLD 217 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~ 217 (248)
...... +.++|+||||+|.|+...+|+|++.+|+.++++.||++|+.+..++ ++++|||..+.|.+++.
T Consensus 99 ~~~~~~----------~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll-~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 99 VQTAQL----------GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLL-PTIKSRCQQQACPLPSN 167 (328)
T ss_pred hhcccc----------CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCc-HHHHhhceeeeCCCcCH
Confidence 543332 2367999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cccchHHHHHHHH
Q 025762 218 QISFDKEYIRIIY 230 (248)
Q Consensus 218 ~~~~~~~~~~l~~ 230 (248)
+++ ...|..
T Consensus 168 ~~~----~~~L~~ 176 (328)
T PRK05707 168 EES----LQWLQQ 176 (328)
T ss_pred HHH----HHHHHH
Confidence 999 666654
No 70
>PRK04132 replication factor C small subunit; Provisional
Probab=99.82 E-value=1.6e-19 Score=160.78 Aligned_cols=146 Identities=44% Similarity=0.581 Sum_probs=126.5
Q ss_pred EEEEc--CCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEe
Q 025762 85 MLFYG--PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (248)
Q Consensus 85 ill~G--p~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilD 162 (248)
-++.| |.+.||||+|.++|+++.+. .+...++++++++..+.+.+++.+..+....... ..++.|+|||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~--------~~~~KVvIID 637 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVKEFARTKPIG--------GASFKIIFLD 637 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC--------CCCCEEEEEE
Confidence 46678 99999999999999998654 3466899999999888898988887765432211 1235799999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 163 Ei~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
|+|.|+.+.+++|++.||+++..+.||++||++..+. ++++|||..+.|.+++.+++ ..+|..+|.+++++.+++
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi-~tIrSRC~~i~F~~ls~~~i----~~~L~~I~~~Egi~i~~e 712 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII-EPIQSRCAIFRFRPLRDEDI----AKRLRYIAENEGLELTEE 712 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCc-hHHhhhceEEeCCCCCHHHH----HHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999999999999999 99999999999999999999 999999999999887666
Q ss_pred ee
Q 025762 243 SL 244 (248)
Q Consensus 243 ~l 244 (248)
.+
T Consensus 713 ~L 714 (846)
T PRK04132 713 GL 714 (846)
T ss_pred HH
Confidence 54
No 71
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.81 E-value=8.6e-19 Score=141.38 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=118.6
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc-----------------cccceEEeccC---CC
Q 025762 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-----------------YKSRVLELNAS---DD 124 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~-----------------~~~~~~~~~~~---~~ 124 (248)
+...++.+.+.+..++.+| ++|+||.|+||+++|.++++.+.|... .+.++..+.+. ..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 3556778888888887665 899999999999999999999977542 23355555543 23
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHH
Q 025762 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALF 204 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~ 204 (248)
...+.++........... .+.++|+|||++|.|+....|+|++.+|+.++++.||++|+.+..+. ++++
T Consensus 88 I~vdqiR~l~~~~~~~~~----------~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL-pTI~ 156 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQ----------LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL-PTIV 156 (319)
T ss_pred CCHHHHHHHHHHHhhCcc----------cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh-HHHH
Confidence 455666665444332222 23468999999999999999999999999999999999999999999 9999
Q ss_pred hhhheeeeccCCccccchHHHHHHH
Q 025762 205 SFLLFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 205 ~r~~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
|||..+.|.+++.+++ .+.+.
T Consensus 157 SRCq~~~~~~~~~~~~----~~~L~ 177 (319)
T PRK06090 157 SRCQQWVVTPPSTAQA----MQWLK 177 (319)
T ss_pred hcceeEeCCCCCHHHH----HHHHH
Confidence 9999999999999999 66664
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.80 E-value=4.6e-19 Score=138.68 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=113.6
Q ss_pred cccccc--ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~--g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
.|++++ ++..+...+.++......++++|+||+|||||||++++++.+... +....++..+.... ...+....
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~----~~~~~~~~ 94 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW----FVPEVLEG 94 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh----hhHHHHHH
Confidence 455555 466777888888777777799999999999999999999987432 22222332221110 01111111
Q ss_pred hHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCC--ceEEEEEeCCC-cc---cChHHHHhhh-
Q 025762 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK--VTRFFFICNYI-SR---CTFSALFSFL- 207 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~--~~~ii~~~n~~-~~---~~~~~l~~r~- 207 (248)
+. ..++|+|||++.+. +..+..|+.+++...+ ...+|++|+.+ .. +. +.|+||+
T Consensus 95 ~~----------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~-~~L~SRl~ 157 (235)
T PRK08084 95 ME----------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL-PDLASRLD 157 (235)
T ss_pred hh----------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc-HHHHHHHh
Confidence 10 12599999999985 4556677777776543 33577777643 33 46 9999999
Q ss_pred --heeeeccCCccccchHHHHHHHHHHhhcCccccCceeeee
Q 025762 208 --LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247 (248)
Q Consensus 208 --~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 247 (248)
.++.+.+|+.++. ..++++.+...++..+++.+.|.
T Consensus 158 ~g~~~~l~~~~~~~~----~~~l~~~a~~~~~~l~~~v~~~L 195 (235)
T PRK08084 158 WGQIYKLQPLSDEEK----LQALQLRARLRGFELPEDVGRFL 195 (235)
T ss_pred CCceeeecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHHH
Confidence 6899999999999 99999988888999888877663
No 73
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=8e-19 Score=140.70 Aligned_cols=165 Identities=20% Similarity=0.143 Sum_probs=112.6
Q ss_pred ccccccHHHHHHHHHHHH--------c-------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCcc-ccceEEeccCCC
Q 025762 61 KDVAHQEEVVRVLTNTLE--------T-------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~--------~-------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~-~~~~~~~~~~~~ 124 (248)
.+++|.+.+++++.+.+. . ..+.|++|+||||||||++|+++++.+...+.. ...+++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 368898888876654431 1 134579999999999999999999987433332 223555554332
Q ss_pred cchHHHH--HHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 125 RGINVVR--TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 125 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l---------~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.+..... ........ .+.++||||||++.+ +.+.++.|+..|++.....++|++++
T Consensus 103 ~~~~~g~~~~~~~~~l~-------------~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~ 169 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLK-------------KAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGY 169 (287)
T ss_pred HHHHhccchHHHHHHHH-------------HccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1110000 00001000 112469999999986 46788999999998877777777775
Q ss_pred CC-----cccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCce
Q 025762 194 YI-----SRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLS 243 (248)
Q Consensus 194 ~~-----~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (248)
.. .... |++.+||. .+.|++++.+++ ..++...+.+.+...++..
T Consensus 170 ~~~~~~~~~~n-p~L~sR~~~~i~F~~~t~~el----~~I~~~~l~~~~~~l~~~~ 220 (287)
T CHL00181 170 KDRMDKFYESN-PGLSSRIANHVDFPDYTPEEL----LQIAKIMLEEQQYQLTPEA 220 (287)
T ss_pred cHHHHHHHhcC-HHHHHhCCceEEcCCcCHHHH----HHHHHHHHHHhcCCCChhH
Confidence 32 2345 89999988 799999999999 9999999998887766543
No 74
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.80 E-value=1.9e-18 Score=131.14 Aligned_cols=145 Identities=24% Similarity=0.314 Sum_probs=108.1
Q ss_pred HHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHhcCCCc------------------cccceEEeccCC-CcchHHHH
Q 025762 72 VLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNASD-DRGINVVR 131 (248)
Q Consensus 72 ~l~~~l~~~~~~-~ill~Gp~G~GKT~la~~la~~~~~~~~------------------~~~~~~~~~~~~-~~~~~~~~ 131 (248)
.|.+.+..++.+ .++|+||+|+|||++|+.+++.+.+... ...++..+.... ..+.+.++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 566667777654 4999999999999999999999976410 011222232221 23344455
Q ss_pred HHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheee
Q 025762 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFM 211 (248)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~ 211 (248)
..+........ .+.+.|+||||+|.++...++.|++.+++.+..+.+|++++....+. +++.+||..+.
T Consensus 83 ~i~~~~~~~~~----------~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~-~~i~sr~~~~~ 151 (188)
T TIGR00678 83 ELVEFLSRTPQ----------ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL-PTIRSRCQVLP 151 (188)
T ss_pred HHHHHHccCcc----------cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh-HHHHhhcEEee
Confidence 44444332211 13467999999999999999999999999888889999999888898 99999999999
Q ss_pred eccCCccccchHHHHHHHHH
Q 025762 212 FFSLLDQISFDKEYIRIIYA 231 (248)
Q Consensus 212 ~~~~~~~~~~~~~~~~l~~~ 231 (248)
|.|++.+++ ..++...
T Consensus 152 ~~~~~~~~~----~~~l~~~ 167 (188)
T TIGR00678 152 FPPLSEEAL----LQWLIRQ 167 (188)
T ss_pred CCCCCHHHH----HHHHHHc
Confidence 999999999 7777654
No 75
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.7e-20 Score=156.33 Aligned_cols=196 Identities=20% Similarity=0.251 Sum_probs=143.6
Q ss_pred ccCCCCCchHHHHhhhcccccCccchhhccCCC-cc--------ccccccHHHHHHHHHHHHcC------CCCeEEEEcC
Q 025762 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPK-QV--------KDVAHQEEVVRVLTNTLETA------NCPHMLFYGP 90 (248)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~g~~~~~~~l~~~l~~~------~~~~ill~Gp 90 (248)
...++.+.+.++.+.+-+|+.. .||.+.-... ++ .+-.|-+.+++++.+.+... .++.+||+||
T Consensus 280 ~~m~~~SaE~~ViRnYlDwll~-lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGP 358 (782)
T COG0466 280 ETMSPMSAEATVIRNYLDWLLD-LPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGP 358 (782)
T ss_pred hcCCCCCchHHHHHHHHHHHHh-CCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECC
Confidence 4456777888888888777654 4787654432 11 24568899999998887543 5678999999
Q ss_pred CCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH
Q 025762 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170 (248)
Q Consensus 91 ~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~ 170 (248)
||+|||+|++.+|+.+ +..++.+..+..+....++..-.++....++.-............|++|||+|+|+.+
T Consensus 359 PGVGKTSLgkSIA~al------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss 432 (782)
T COG0466 359 PGVGKTSLGKSIAKAL------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSS 432 (782)
T ss_pred CCCCchhHHHHHHHHh------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCC
Confidence 9999999999999999 7788888888777777666554444333222111111111223469999999999643
Q ss_pred ----HHHHHHHHHhhcC---------------CceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHH
Q 025762 171 ----AQNALRRTMETYS---------------KVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYA 231 (248)
Q Consensus 171 ----~~~~L~~~l~~~~---------------~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~ 231 (248)
-.++|+++++.-+ ....||+|+|....++ .+|++|+.+|++..|+.+|- ..+.+++
T Consensus 433 ~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP-~PLlDRMEiI~lsgYt~~EK----l~IAk~~ 507 (782)
T COG0466 433 FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIP-APLLDRMEVIRLSGYTEDEK----LEIAKRH 507 (782)
T ss_pred CCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCC-hHHhcceeeeeecCCChHHH----HHHHHHh
Confidence 4578888886422 3456888899999999 99999999999999999999 8887777
Q ss_pred Hh
Q 025762 232 ST 233 (248)
Q Consensus 232 ~~ 233 (248)
+-
T Consensus 508 Li 509 (782)
T COG0466 508 LI 509 (782)
T ss_pred cc
Confidence 43
No 76
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.6e-18 Score=137.53 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=116.3
Q ss_pred CccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
-+++++-|-+++++.|.+.+.-. .+..|||+||||||||.||+|+|++. +..++.+.++..
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSEl 221 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSEL 221 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHHH
Confidence 46788889999999998887542 45579999999999999999999998 556666766654
Q ss_pred c------chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhh---c--
Q 025762 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMET---Y-- 182 (248)
Q Consensus 125 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l-----------~~~~~~~L~~~l~~---~-- 182 (248)
. +...+++.+.-... ....++||||+|.+ +.++|..+++++.. +
T Consensus 222 VqKYiGEGaRlVRelF~lAre--------------kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 222 VQKYIGEGARLVRELFELARE--------------KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHHHhccchHHHHHHHHHHhh--------------cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 2 22233333332111 12369999999987 35577777776653 2
Q ss_pred CCceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 183 SKVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 183 ~~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
..+.++|++||.++-++ |+|++ |+. .|.|+.|+.+.. ..+++-+..+-++.
T Consensus 288 ~~nvKVI~ATNR~D~LD-PALLRPGR~DRkIEfplPd~~gR----~~Il~IHtrkM~l~ 341 (406)
T COG1222 288 RGNVKVIMATNRPDILD-PALLRPGRFDRKIEFPLPDEEGR----AEILKIHTRKMNLA 341 (406)
T ss_pred CCCeEEEEecCCccccC-hhhcCCCcccceeecCCCCHHHH----HHHHHHHhhhccCc
Confidence 35678999999999999 99988 777 599999999988 88888777766654
No 77
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.80 E-value=2.5e-18 Score=140.00 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc-------------------cccceEEeccC-----
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-------------------YKSRVLELNAS----- 122 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~-------------------~~~~~~~~~~~----- 122 (248)
...++.|... ...-.+.++|+||+|+||+++|..+++.+.|... .+.++..+.+.
T Consensus 7 ~~~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~ 85 (342)
T PRK06964 7 TDDWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAE 85 (342)
T ss_pred HHHHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 3445566553 3333445899999999999999999999988541 11233333222
Q ss_pred ------------------------CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 025762 123 ------------------------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRT 178 (248)
Q Consensus 123 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~ 178 (248)
.....+.++.+...+..... .+.++|+|||++|+|+....|+|++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~----------~~~~kV~iI~~ae~m~~~AaNaLLKt 155 (342)
T PRK06964 86 APGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTH----------RGGARVVVLYPAEALNVAAANALLKT 155 (342)
T ss_pred ccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCc----------cCCceEEEEechhhcCHHHHHHHHHH
Confidence 12334445554443332211 23468999999999999999999999
Q ss_pred HhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHH
Q 025762 179 METYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIY 230 (248)
Q Consensus 179 l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~ 230 (248)
+|+.++++.||++|+.+..++ ++++|||..+.|.+++.+++ .+.|..
T Consensus 156 LEEPp~~t~fiL~t~~~~~LL-pTI~SRcq~i~~~~~~~~~~----~~~L~~ 202 (342)
T PRK06964 156 LEEPPPGTVFLLVSARIDRLL-PTILSRCRQFPMTVPAPEAA----AAWLAA 202 (342)
T ss_pred hcCCCcCcEEEEEECChhhCc-HHHHhcCEEEEecCCCHHHH----HHHHHH
Confidence 999999999999999999999 99999999999999999999 666654
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.79 E-value=2.9e-18 Score=150.60 Aligned_cols=191 Identities=18% Similarity=0.168 Sum_probs=132.5
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccceEEeccCC
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASD 123 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~~~ 123 (248)
..+..+.++|..|++++|++..++.+...+......+++|+||||||||++|+.+++....... ....++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 3467778999999999999999999988887777788999999999999999999887632211 134567777654
Q ss_pred Ccc-hHHHHH-HHH--------HhH---hhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------
Q 025762 124 DRG-INVVRT-KIK--------TFA---AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------- 183 (248)
Q Consensus 124 ~~~-~~~~~~-~~~--------~~~---~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------- 183 (248)
... ...+.. .+. ... ..........+.......++|||||++.++...++.|++++++..
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~ 300 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSY 300 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecce
Confidence 321 111100 000 000 000001112333344556899999999999999999999998642
Q ss_pred -------------------CceEEEEE---eCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccC
Q 025762 184 -------------------KVTRFFFI---CNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFG 241 (248)
Q Consensus 184 -------------------~~~~ii~~---~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (248)
....++++ ++.+..+. +++++||..+.|.|++.+++ ..+++..+.+.++..++
T Consensus 301 ~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~-~aLrSR~~~i~~~pls~edi----~~Il~~~a~~~~v~ls~ 375 (615)
T TIGR02903 301 YDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEIN-PALRSRCAEVFFEPLTPEDI----ALIVLNAAEKINVHLAA 375 (615)
T ss_pred eccCCcccchhhhhhcccCccceEEEEEeccccccccC-HHHHhceeEEEeCCCCHHHH----HHHHHHHHHHcCCCCCH
Confidence 11223333 34566788 99999999999999999999 88888888877765554
Q ss_pred ce
Q 025762 242 LS 243 (248)
Q Consensus 242 ~~ 243 (248)
..
T Consensus 376 ea 377 (615)
T TIGR02903 376 GV 377 (615)
T ss_pred HH
Confidence 43
No 79
>PRK06526 transposase; Provisional
Probab=99.79 E-value=5.8e-20 Score=144.49 Aligned_cols=203 Identities=12% Similarity=0.131 Sum_probs=131.9
Q ss_pred CcccccccccccCCCCCCccccccc--ccCCCCCchHHHHhhhcccccCccchhhccCCCccccccc-cHHHHHHHHHHH
Q 025762 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLTNTL 77 (248)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~l 77 (248)
|+.+|++++..+....+++.+++.. ..|...++.+.+.+++. .+.+|+.+.+...+|+...+ ....+..+..+-
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~lk---~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~ 93 (254)
T PRK06526 17 LAGAVERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIR---AARFPARKSLEEFDFDHQRSLKRDTIAHLGTLD 93 (254)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCChhhccCccCCCcchHHHHHHhcCc
Confidence 3567788888888999999999877 66777888899999888 77788876666666766554 345556665555
Q ss_pred HcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCce
Q 025762 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (248)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (248)
+.....|++|+||||||||++|.+++..+...+ +...+ .... ..+..+.................+.+
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g-~~v~f--~t~~---------~l~~~l~~~~~~~~~~~~l~~l~~~d 161 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAG-HRVLF--ATAA---------QWVARLAAAHHAGRLQAELVKLGRYP 161 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCC-Cchhh--hhHH---------HHHHHHHHHHhcCcHHHHHHHhccCC
Confidence 556677999999999999999999999984332 22211 1111 11111111000000000001123457
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHhhcCCceEEEEEeCCCccc-----C----hHHHHhh----hheeeeccCCcc
Q 025762 158 IIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYISRC-----T----FSALFSF----LLFFMFFSLLDQ 218 (248)
Q Consensus 158 vlilDEi~~l~--~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~-----~----~~~l~~r----~~~i~~~~~~~~ 218 (248)
+|||||++..+ ....+.|+.+++.+++...+|++||.+..- . -.++.+| +.++.|...+-.
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 99999999875 667788999998877777799999854221 1 1244555 446777765443
No 80
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=1.8e-17 Score=131.27 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCC----------ccccceEEeccCC---CcchHHHHH
Q 025762 67 EEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE----------LYKSRVLELNASD---DRGINVVRT 132 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~ 132 (248)
...++.|.+.+..++.+| ++|+||.|+||+.+|.++++.+.|.. +.+.++..+.+.. ....+.++.
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 356788888998887666 77999999999999999999998853 2244555554432 245666776
Q ss_pred HHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeee
Q 025762 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMF 212 (248)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~ 212 (248)
....+...... +.++|+|||++|.|+.+.+|+|++.+|++++.+.+|++|+.+..++ ++++|||..+.|
T Consensus 83 l~~~~~~~p~e----------~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll-~TI~SRcq~~~~ 151 (290)
T PRK05917 83 IKKQIWIHPYE----------SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLP-PTIRSRSLSIHI 151 (290)
T ss_pred HHHHHhhCccC----------CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCc-HHHHhcceEEEc
Confidence 66655543332 3468999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCcccc
Q 025762 213 FSLLDQIS 220 (248)
Q Consensus 213 ~~~~~~~~ 220 (248)
.+++...+
T Consensus 152 ~~~~~~~i 159 (290)
T PRK05917 152 PMEEKTLV 159 (290)
T ss_pred cchhccCC
Confidence 98865433
No 81
>PRK06893 DNA replication initiation factor; Validated
Probab=99.77 E-value=2.2e-18 Score=134.39 Aligned_cols=165 Identities=12% Similarity=0.145 Sum_probs=108.3
Q ss_pred CCccccccccHHHH--HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHH
Q 025762 57 PKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (248)
Q Consensus 57 ~~~~~~~~g~~~~~--~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (248)
+..|+++++++... ..+.+.......+.++|+||||||||||++++++++...+ ....++.....+... ....
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~y~~~~~~~~~~----~~~~ 86 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ-RTAIYIPLSKSQYFS----PAVL 86 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCeEEeeHHHhhhhh----HHHH
Confidence 45788888654332 3333333334445689999999999999999999984332 222333322111111 1111
Q ss_pred HHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCc--eEEEEEeCCC-cc---cChHHHHhh
Q 025762 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKV--TRFFFICNYI-SR---CTFSALFSF 206 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~--~~ii~~~n~~-~~---~~~~~l~~r 206 (248)
.. ..+.++|+|||++.+. ......|+.+++..... ..+|+++|.. .. .. +.+.+|
T Consensus 87 ~~----------------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~-~~L~sR 149 (229)
T PRK06893 87 EN----------------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKL-PDLASR 149 (229)
T ss_pred hh----------------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccc-hhHHHH
Confidence 11 1124699999999874 34455788888766543 2345666642 22 34 799999
Q ss_pred hh---eeeeccCCccccchHHHHHHHHHHhhcCccccCceeeee
Q 025762 207 LL---FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247 (248)
Q Consensus 207 ~~---~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 247 (248)
+. .+.+.+|+.++. ..++++.+...++..+++.+.|.
T Consensus 150 l~~g~~~~l~~pd~e~~----~~iL~~~a~~~~l~l~~~v~~~L 189 (229)
T PRK06893 150 LTWGEIYQLNDLTDEQK----IIVLQRNAYQRGIELSDEVANFL 189 (229)
T ss_pred HhcCCeeeCCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHHH
Confidence 86 799999999999 99999999999999888877663
No 82
>PRK08727 hypothetical protein; Validated
Probab=99.77 E-value=5.7e-18 Score=132.36 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=108.8
Q ss_pred ccccccc-cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHh
Q 025762 59 QVKDVAH-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (248)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (248)
.|+.+++ .......+...........++|+||+||||||+++++++.+...+ . .+..+...+.. ..+...+..+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~-~--~~~y~~~~~~~--~~~~~~~~~l 91 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG-R--SSAYLPLQAAA--GRLRDALEAL 91 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-C--cEEEEeHHHhh--hhHHHHHHHH
Confidence 5666654 444444444443333334599999999999999999999984332 2 22223222211 1111111111
Q ss_pred HhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEEeCCC-c---ccChHHHHhh---h
Q 025762 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYI-S---RCTFSALFSF---L 207 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~-~~~ii~~~n~~-~---~~~~~~l~~r---~ 207 (248)
.+.++|+|||++.+. ...+..++.+++.... ...+|+++|.+ . .+. +.+.|| +
T Consensus 92 ----------------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~-~dL~SRl~~~ 154 (233)
T PRK08727 92 ----------------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVL-PDLRSRLAQC 154 (233)
T ss_pred ----------------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhh-HHHHHHHhcC
Confidence 123699999999985 4556778888877654 34588888743 2 245 899999 5
Q ss_pred heeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 208 LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
..+.|++|+.+++ ..+++..+..+++..+++.+.|
T Consensus 155 ~~~~l~~~~~e~~----~~iL~~~a~~~~l~l~~e~~~~ 189 (233)
T PRK08727 155 IRIGLPVLDDVAR----AAVLRERAQRRGLALDEAAIDW 189 (233)
T ss_pred ceEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 6899999999999 9999999999999888887765
No 83
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.76 E-value=1.1e-17 Score=134.20 Aligned_cols=163 Identities=18% Similarity=0.124 Sum_probs=109.3
Q ss_pred cccccHHHHHHHHHHHH---c-------C-----CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCcc-ccceEEeccCCCc
Q 025762 62 DVAHQEEVVRVLTNTLE---T-------A-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDDR 125 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---~-------~-----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~-~~~~~~~~~~~~~ 125 (248)
+++|.+++++.+.+... . + .+.+++|+||||||||++|+++++.+...+.. ...++.+++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 57888888776654321 1 1 23479999999999999999999988543332 1245555543321
Q ss_pred chHHHH--HHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 126 GINVVR--TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 126 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l---------~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
...... ....... ..+..++|||||++.+ +.+.++.|++.|+......++|++++.
T Consensus 103 ~~~~g~~~~~~~~~~-------------~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~ 169 (284)
T TIGR02880 103 GQYIGHTAPKTKEIL-------------KRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYK 169 (284)
T ss_pred HhhcccchHHHHHHH-------------HHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 100000 0000000 1122479999999977 356788999999988777777777753
Q ss_pred C-----cccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 195 I-----SRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 195 ~-----~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
. ..+. +++.+||. .+.|++++.+++ ..++.+.+.+.+...++.
T Consensus 170 ~~~~~~~~~n-p~L~sR~~~~i~fp~l~~edl----~~I~~~~l~~~~~~l~~~ 218 (284)
T TIGR02880 170 DRMDSFFESN-PGFSSRVAHHVDFPDYSEAEL----LVIAGLMLKEQQYRFSAE 218 (284)
T ss_pred HHHHHHHhhC-HHHHhhCCcEEEeCCcCHHHH----HHHHHHHHHHhccccCHH
Confidence 2 2346 89999986 699999999999 888888888877655444
No 84
>PRK08181 transposase; Validated
Probab=99.75 E-value=6.5e-19 Score=139.22 Aligned_cols=179 Identities=16% Similarity=0.221 Sum_probs=112.9
Q ss_pred cccccccccccCCCCCCccccccc--ccCCCCCchHHHHhhhcccccCccchhhccCCCccccccc-cHHHHHHHHHHH-
Q 025762 2 RANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLTNTL- 77 (248)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~l- 77 (248)
+.+|++++..+....+++.+++.. ..|...+..+.+.+++. .+..|....+...++....+ .+.....+..+-
T Consensus 25 ~~~~~~~~~~a~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk---~A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~~ 101 (269)
T PRK08181 25 KTLWPQFAEQADKEGWPAARFLAAIAEHELAERARRRIERHLA---EAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGDS 101 (269)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHhhCCccCCCCCCHHHHHHHHHHHH
Confidence 456777777888888888888877 56667778888888887 56666554444445554443 345555554441
Q ss_pred HcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCce
Q 025762 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (248)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (248)
+.....|++|+||||||||||+.++++.+...+ + .+..+...+. ...+.. ...............+.+
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~--~v~f~~~~~L------~~~l~~---a~~~~~~~~~l~~l~~~d 169 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-W--RVLFTRTTDL------VQKLQV---ARRELQLESAIAKLDKFD 169 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-C--ceeeeeHHHH------HHHHHH---HHhCCcHHHHHHHHhcCC
Confidence 334566999999999999999999999984332 2 2222222211 111100 000000000000112357
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 158 IIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 158 vlilDEi~~l~--~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
+|||||++..+ ...+..|+++++.+++...+|++||.+
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 99999998875 445678999999888777899999853
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=2.8e-17 Score=147.82 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=128.4
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~ 121 (248)
....++.+..++..++.++|++..+..+...+......|++|+||||||||++++++++.+..... ....++.++.
T Consensus 167 ~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 167 KYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred HHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 345688888999999999999999999999888888889999999999999999999999843322 2445666654
Q ss_pred CCCcc----hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhcCCceEE
Q 025762 122 SDDRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 122 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~---------~~~~~~L~~~l~~~~~~~~i 188 (248)
..... .......+......... ....||||||+|.+. .+..+.|...++.+ ...+
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~----------~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~ 314 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEK----------EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRC 314 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhc----------cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEE
Confidence 33221 11222333333222111 113699999999873 34567777777653 4567
Q ss_pred EEEeCC-----CcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHh----hcCccccCceee
Q 025762 189 FFICNY-----ISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAST----LKFLEGFGLSLT 245 (248)
Q Consensus 189 i~~~n~-----~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~ 245 (248)
|.+||. ....+ +++.+||..+.+.+|+.++. ..+++.+.. ..++..+++++.
T Consensus 315 IgaTt~~e~~~~~~~d-~al~rRf~~i~v~~p~~~~~----~~il~~~~~~~e~~~~v~i~~~al~ 375 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKD-RALSRRFQKIDVGEPSIEET----VKILKGLKEKYEEFHHVKYSDEALE 375 (731)
T ss_pred EEecCHHHHHHHhhhh-HHHHHhCceEEeCCCCHHHH----HHHHHHHHHHHHhccCcccCHHHHH
Confidence 777774 24567 99999999999999999999 666664443 345556665543
No 86
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=1.9e-18 Score=156.04 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=103.1
Q ss_pred cccccHHHHHHHHHHHHcC------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 62 DVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
++.|++.+++.+..++... .+++++|+||||||||++|++++..+ ...++.+..........+.....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l------~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL------NRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh------cCCeEEEeCCCcccHHHHcCCCC
Confidence 5779999999888766422 45679999999999999999999998 34455554433222111110000
Q ss_pred HhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhcC---------------CceEEEEEeCCCc
Q 025762 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETYS---------------KVTRFFFICNYIS 196 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~----~~~~L~~~l~~~~---------------~~~~ii~~~n~~~ 196 (248)
.+.....+..............|++|||+|.+... ..++|+++++... .+..||+|+|...
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~ 474 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID 474 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch
Confidence 00000000000000000112359999999999653 3477888886410 3456889999999
Q ss_pred ccChHHHHhhhheeeeccCCccccchHHHHHHHHHH
Q 025762 197 RCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 197 ~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
.++ +++++||.++.|.+|+.++. ..+++..+
T Consensus 475 ~i~-~~L~~R~~vi~~~~~~~~e~----~~I~~~~l 505 (775)
T TIGR00763 475 TIP-RPLLDRMEVIELSGYTEEEK----LEIAKKYL 505 (775)
T ss_pred hCC-HHHhCCeeEEecCCCCHHHH----HHHHHHHH
Confidence 999 99999999999999999999 66665543
No 87
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=1.7e-16 Score=129.16 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc-------------------cccceEEeccCC---
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-------------------YKSRVLELNASD--- 123 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~-------------------~~~~~~~~~~~~--- 123 (248)
+...++.+... ...-.+.++|+||+|+|||++|..+++.+.|... .+.++..+.+..
T Consensus 6 ~~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~ 84 (325)
T PRK08699 6 HQEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP 84 (325)
T ss_pred cHHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc
Confidence 34455666544 2223334999999999999999999999977432 123566665531
Q ss_pred -------CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 124 -------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 124 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
....+.++............ +.++|+++|+++.++...++.|++.+++.+..+.+|++|..+.
T Consensus 85 ~~g~~~~~I~id~iR~l~~~~~~~p~~----------~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~ 154 (325)
T PRK08699 85 ENGRKLLQIKIDAVREIIDNVYLTSVR----------GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAAD 154 (325)
T ss_pred cccccCCCcCHHHHHHHHHHHhhCccc----------CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChH
Confidence 13556666655444332222 3367999999999999999999999999887788999999999
Q ss_pred ccChHHHHhhhheeeeccCCccccchHHHHHHH
Q 025762 197 RCTFSALFSFLLFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 197 ~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
.++ +++.|||..+.|.+++.+++ ...|.
T Consensus 155 ~ll-~ti~SRc~~~~~~~~~~~~~----~~~L~ 182 (325)
T PRK08699 155 KVL-PTIKSRCRKMVLPAPSHEEA----LAYLR 182 (325)
T ss_pred hCh-HHHHHHhhhhcCCCCCHHHH----HHHHH
Confidence 999 99999999999999999999 66664
No 88
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.2e-18 Score=144.42 Aligned_cols=192 Identities=19% Similarity=0.244 Sum_probs=131.1
Q ss_pred CCCCchHHHHhhhcccccCccchhhccCCC---------ccccccccHHHHHHHHHHHHcC------CCCeEEEEcCCCC
Q 025762 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPK---------QVKDVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGT 93 (248)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~~~~~~~l~~~l~~~------~~~~ill~Gp~G~ 93 (248)
.++..+-.+.+++-+|+. ..||....... --++-.|-+++++++.+.+..+ +++.+||+||||+
T Consensus 371 e~~~sEfnvtrNYLdwlt-~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGV 449 (906)
T KOG2004|consen 371 EPSSSEFNVTRNYLDWLT-SLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGV 449 (906)
T ss_pred CccccchhHHHHHHHHHH-hCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCC
Confidence 445556666666655543 34775532210 1235568899999999888654 4567999999999
Q ss_pred cHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH----
Q 025762 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE---- 169 (248)
Q Consensus 94 GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~---- 169 (248)
|||++++.+|+.+ +..++.+..+.......++..-.++...+.+.-..........+.+++|||+|++..
T Consensus 450 GKTSI~kSIA~AL------nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qG 523 (906)
T KOG2004|consen 450 GKTSIAKSIARAL------NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQG 523 (906)
T ss_pred CcccHHHHHHHHh------CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCC
Confidence 9999999999999 667777777665555554444333332222211111111123356999999999953
Q ss_pred HHHHHHHHHHhhcC---------------CceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHH
Q 025762 170 DAQNALRRTMETYS---------------KVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 170 ~~~~~L~~~l~~~~---------------~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
+-..+|+++++.-+ ....||+|+|....++ ++|++|+.+|++..|..+|. ..+...++
T Consensus 524 DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP-~pLlDRMEvIelsGYv~eEK----v~IA~~yL 596 (906)
T KOG2004|consen 524 DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIP-PPLLDRMEVIELSGYVAEEK----VKIAERYL 596 (906)
T ss_pred ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCC-hhhhhhhheeeccCccHHHH----HHHHHHhh
Confidence 34577888886432 3445888899999999 99999999999999999999 77776663
No 89
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.72 E-value=1.5e-16 Score=133.22 Aligned_cols=160 Identities=20% Similarity=0.215 Sum_probs=108.4
Q ss_pred CccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
..++++.|.+.+++.+...+.. ..+.+++|+||||||||++|+++++.+ ...++.+.+++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l 201 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSEL 201 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHH
Confidence 4678899999999888876632 234579999999999999999999998 345566655543
Q ss_pred cchH--HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhhc-----CCce
Q 025762 125 RGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETY-----SKVT 186 (248)
Q Consensus 125 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l-----------~~~~~~~L~~~l~~~-----~~~~ 186 (248)
.... .....+..+...... ....+|||||+|.+ +.+.+..+..++... ....
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~----------~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 271 (389)
T PRK03992 202 VQKFIGEGARLVRELFELARE----------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNV 271 (389)
T ss_pred hHhhccchHHHHHHHHHHHHh----------cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCE
Confidence 2110 001111111111100 12369999999987 244555566655432 2356
Q ss_pred EEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 187 RFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 187 ~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
.+|++||.+..++ +++++ ||. .+.|++|+.++. ..+++.++....+.
T Consensus 272 ~VI~aTn~~~~ld-~allRpgRfd~~I~v~~P~~~~R----~~Il~~~~~~~~~~ 321 (389)
T PRK03992 272 KIIAATNRIDILD-PAILRPGRFDRIIEVPLPDEEGR----LEILKIHTRKMNLA 321 (389)
T ss_pred EEEEecCChhhCC-HHHcCCccCceEEEECCCCHHHH----HHHHHHHhccCCCC
Confidence 7899999999998 99986 776 699999999999 88888776655543
No 90
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.72 E-value=3.5e-17 Score=146.86 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=122.8
Q ss_pred CCCCchHHHHhhhcccccCccchhhccCCC-c-------c-ccccccHHHHHHHHHHHHc------CCCCeEEEEcCCCC
Q 025762 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPK-Q-------V-KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGT 93 (248)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~-~~~~g~~~~~~~l~~~l~~------~~~~~ill~Gp~G~ 93 (248)
.+...+..+.+.+-+|+.. .||....... + + .+..|.+.+++++.+++.. ..++.++|+||||+
T Consensus 282 ~~~~~e~~~~~~yl~~~~~-~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~ 360 (784)
T PRK10787 282 SPMSAEATVVRGYIDWMVQ-VPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV 360 (784)
T ss_pred CCCCchHHHHHHHHHHHHh-CCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCC
Confidence 4445556666666555544 6886654321 1 2 2578999999999887763 35667999999999
Q ss_pred cHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHH--
Q 025762 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA-- 171 (248)
Q Consensus 94 GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~-- 171 (248)
|||++++.++..+ +.++..++.+.......+......+.....+..............|++|||+|+++.+.
T Consensus 361 GKTtl~~~ia~~l------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g 434 (784)
T PRK10787 361 GKTSLGQSIAKAT------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRG 434 (784)
T ss_pred CHHHHHHHHHHHh------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCC
Confidence 9999999999988 44555555544333322222111111000000000000001123599999999998765
Q ss_pred --HHHHHHHHhhcC---------------CceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHH
Q 025762 172 --QNALRRTMETYS---------------KVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 172 --~~~L~~~l~~~~---------------~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
.++|+++++... .+..+|+|+|.. .++ ++|++||.++.|.+++.++. ..+.++.+
T Consensus 435 ~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~-~aLl~R~~ii~~~~~t~eek----~~Ia~~~L 506 (784)
T PRK10787 435 DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIP-APLLDRMEVIRLSGYTEDEK----LNIAKRHL 506 (784)
T ss_pred CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCC-HHHhcceeeeecCCCCHHHH----HHHHHHhh
Confidence 589999997521 345567777765 688 99999999999999999999 66666555
No 91
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.4e-17 Score=135.45 Aligned_cols=156 Identities=20% Similarity=0.154 Sum_probs=116.9
Q ss_pred ccccccccHHHHHHHHHHHHcC------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc-
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR- 125 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~- 125 (248)
.|+++-|.+.....|...+..- ..+.+||+||||||||.||+++|.++ ..+++.+......
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApeivS 261 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEIVS 261 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhhhc
Confidence 4888889988888877666431 23459999999999999999999999 6777777775542
Q ss_pred -----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhcC------
Q 025762 126 -----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS------ 183 (248)
Q Consensus 126 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~-----------~~~~~L~~~l~~~~------ 183 (248)
+...+++++.+.. .. ..+|+||||||.+.+ .....|+..|++..
T Consensus 262 GvSGESEkkiRelF~~A~----~~----------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAK----SN----------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ccCcccHHHHHHHHHHHh----cc----------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 2333444444322 21 136999999999853 24566888887654
Q ss_pred CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCccc
Q 025762 184 KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEG 239 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (248)
..+.+|-+||.++.++ ++|++ ||. .|.+.-|+.... ..+|+.+|....+..
T Consensus 328 ~~VlVIgATnRPDslD-paLRRaGRFdrEI~l~vP~e~aR----~~IL~~~~~~lrl~g 381 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLD-PALRRAGRFDREICLGVPSETAR----EEILRIICRGLRLSG 381 (802)
T ss_pred CCeEEEecCCCCcccC-HHHhccccccceeeecCCchHHH----HHHHHHHHhhCCCCC
Confidence 3345788889999999 99998 677 599999999999 999999988776654
No 92
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=3e-16 Score=124.84 Aligned_cols=142 Identities=22% Similarity=0.266 Sum_probs=113.2
Q ss_pred ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCc------------------cccceEEeccCC-C
Q 025762 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNASD-D 124 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------------~~~~~~~~~~~~-~ 124 (248)
.|+.+++.+.+++..++.+| ++|+|| +||+++|..+++.+.|... .+.++..+.+.. .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 57888899999998887665 799996 6899999999999977542 123455555432 2
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHH
Q 025762 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALF 204 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~ 204 (248)
...+.+++....+...... ++++|+|||++|+|+....|+|++.+|+.+.++.+|++|+.+..+. ++++
T Consensus 84 I~idqIR~l~~~~~~~p~~----------~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lL-pTI~ 152 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYE----------GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVL-PTIK 152 (290)
T ss_pred CCHHHHHHHHHHHhhCccc----------CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCc-hHHH
Confidence 4566777766665543332 3468999999999999999999999999999999999999999999 9999
Q ss_pred hhhheeeeccCCcccc
Q 025762 205 SFLLFFMFFSLLDQIS 220 (248)
Q Consensus 205 ~r~~~i~~~~~~~~~~ 220 (248)
|||..+.|.+ +.+++
T Consensus 153 SRcq~i~f~~-~~~~~ 167 (290)
T PRK07276 153 SRTQIFHFPK-NEAYL 167 (290)
T ss_pred HcceeeeCCC-cHHHH
Confidence 9999999976 55555
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.72 E-value=8.6e-17 Score=125.67 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=112.0
Q ss_pred CCcccccc--ccHHHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH
Q 025762 57 PKQVKDVA--HQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 57 ~~~~~~~~--g~~~~~~~l~~~l~~-~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
+.+|++++ +++.+...+..+... ....+++|+||+|||||++|+++++.+... +..+..+++..... .
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~~~~~i~~~~~~~------~ 84 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG---GRNARYLDAASPLL------A 84 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEehHHhHH------H
Confidence 34677766 345666777766552 345579999999999999999999987432 22444444443211 0
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCce--EEEEEeCCC---cccChHHHHhhh-
Q 025762 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT--RFFFICNYI---SRCTFSALFSFL- 207 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~--~ii~~~n~~---~~~~~~~l~~r~- 207 (248)
.. .....++++|||++.++...+..|+.+++...... .++++++.. ..+. +.+.+|+
T Consensus 85 ~~----------------~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~-~~L~sr~~ 147 (227)
T PRK08903 85 FD----------------FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR-EDLRTRLG 147 (227)
T ss_pred Hh----------------hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC-HHHHHHHh
Confidence 00 01124699999999999888999999997654332 355555532 2355 7888886
Q ss_pred --heeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 208 --LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 208 --~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
..+.++|++.++. ..++..++..+++..+++.+.|
T Consensus 148 ~~~~i~l~pl~~~~~----~~~l~~~~~~~~v~l~~~al~~ 184 (227)
T PRK08903 148 WGLVYELKPLSDADK----IAALKAAAAERGLQLADEVPDY 184 (227)
T ss_pred cCeEEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 5799999999988 8899999999999888776654
No 94
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=4.2e-16 Score=135.91 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=110.2
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCC-----CeEEEEcCCCCcHHHHHHHHHHHhcCCCcc-ccceEEe
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-----PHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLEL 119 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-----~~ill~Gp~G~GKT~la~~la~~~~~~~~~-~~~~~~~ 119 (248)
....||.++|+|..+++++|++..++.+..++..... ..++|+||||+|||++++.++..+...... ..++...
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 4457999999999999999999999999998876432 239999999999999999999987321100 0000000
Q ss_pred ccCC---------------CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh-hc-
Q 025762 120 NASD---------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-TY- 182 (248)
Q Consensus 120 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~-~~- 182 (248)
.... ......+...+.... ......+.....++.||+|||++.+.......+..++. ..
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~----~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~ 224 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRAT----NKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV 224 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHH----hhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh
Confidence 0000 011111222222111 00000011112356799999997764322223333333 11
Q ss_pred -CCceEEEEEeCCC-----------cc----cChHHHHh--hhheeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 183 -SKVTRFFFICNYI-----------SR----CTFSALFS--FLLFFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 183 -~~~~~ii~~~n~~-----------~~----~~~~~l~~--r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
.....+|++++.. .. +. +++++ |+.+|.|+|+...++ ...|.+++.+++..
T Consensus 225 e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~-~eLls~~rv~~I~FnPia~t~l----~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 225 SIGRCPLVFIITESLEGDNNQRRLLFPAETIMN-KEILEEPRVSNISFNPIAPTIM----KKFLNRIVTIEAKK 293 (637)
T ss_pred cCCCceEEEEecCCccccccccccccchhcccC-HhHhcccceeEEEeCCCCHHHH----HHHHHHHHHhhhhc
Confidence 2334466665521 11 33 67887 566799999999999 99999999887653
No 95
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.5e-17 Score=137.33 Aligned_cols=163 Identities=20% Similarity=0.176 Sum_probs=120.2
Q ss_pred hccCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEe
Q 025762 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (248)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (248)
-....-+|+++-|.+++++.|.+.+.. ..+..|||+||||||||++|+++|.+. ...++.+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsv 499 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSV 499 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeec
Confidence 344556899999999999999877643 234569999999999999999999998 4455555
Q ss_pred ccCCC------cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhc
Q 025762 120 NASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY 182 (248)
Q Consensus 120 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~ 182 (248)
.++.. .+...++..+...... ...|+|+||+|.+. ..+.+.|+.-|+..
T Consensus 500 kgpEL~sk~vGeSEr~ir~iF~kAR~~--------------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~ 565 (693)
T KOG0730|consen 500 KGPELFSKYVGESERAIREVFRKARQV--------------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL 565 (693)
T ss_pred cCHHHHHHhcCchHHHHHHHHHHHhhc--------------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc
Confidence 55433 3344455554443221 12699999999873 44677888888765
Q ss_pred CC--ceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcccc
Q 025762 183 SK--VTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGF 240 (248)
Q Consensus 183 ~~--~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (248)
.. +..+|.+||.++.++ +++++ |++ ++.+++|+.+.. +++++..+++..+..+
T Consensus 566 e~~k~V~ViAATNRpd~ID-~ALlRPGRlD~iiyVplPD~~aR----~~Ilk~~~kkmp~~~~ 623 (693)
T KOG0730|consen 566 EALKNVLVIAATNRPDMID-PALLRPGRLDRIIYVPLPDLEAR----LEILKQCAKKMPFSED 623 (693)
T ss_pred cccCcEEEEeccCChhhcC-HHHcCCcccceeEeecCccHHHH----HHHHHHHHhcCCCCcc
Confidence 53 455777889999999 99999 887 688888888888 8888877777665543
No 96
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.71 E-value=1.3e-16 Score=144.72 Aligned_cols=184 Identities=16% Similarity=0.149 Sum_probs=126.4
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC----ccccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (248)
....++.+..++..++.++|++..++++...+......|++|+||||||||++|+.+++.+.... ..+..++.++.
T Consensus 172 ~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 172 QYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred HHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 44567888899999999999999999999988888888999999999999999999999873221 22334555544
Q ss_pred CCCc----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhcCCceEEE
Q 025762 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFF 189 (248)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------~~~~~L~~~l~~~~~~~~ii 189 (248)
+... ....+...+.......... ....||||||+|.+.. +..+.|...++.+ ...+|
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~---------~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~I 320 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKAS---------PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTI 320 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhc---------CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEE
Confidence 4321 2222223333332222110 1236999999999842 2334577777654 45577
Q ss_pred EEeCC-----CcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHh----hcCccccCceee
Q 025762 190 FICNY-----ISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAST----LKFLEGFGLSLT 245 (248)
Q Consensus 190 ~~~n~-----~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~ 245 (248)
.+|+. ....+ ++|.+||..|.+++|+.++. ..+|+.+.. ..++.+.+.++.
T Consensus 321 gaTT~~e~~~~~~~d-~AL~rRf~~i~v~eps~~~~----~~iL~~~~~~~e~~~~v~i~d~al~ 380 (852)
T TIGR03345 321 AATTWAEYKKYFEKD-PALTRRFQVVKVEEPDEETA----IRMLRGLAPVLEKHHGVLILDEAVV 380 (852)
T ss_pred EecCHHHHhhhhhcc-HHHHHhCeEEEeCCCCHHHH----HHHHHHHHHhhhhcCCCeeCHHHHH
Confidence 77764 34577 99999999999999999999 666544433 345666665543
No 97
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.70 E-value=2.8e-16 Score=135.85 Aligned_cols=157 Identities=22% Similarity=0.150 Sum_probs=108.0
Q ss_pred CCCccccccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLE------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~------------~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
....|+++.|.+.++..+.+.+. .....+++|+||||||||++|++++..+ ..+++.+++++
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~ 123 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSD 123 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccHHH
Confidence 34589999999888877665543 1234479999999999999999999997 44555555543
Q ss_pred Ccc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhcC
Q 025762 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS 183 (248)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------------~~~~~L~~~l~~~~ 183 (248)
... ...++..+..... ...+||+|||+|.+.. ...+.|+..|+...
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~--------------~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKK--------------NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHh--------------cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 211 1122222222111 1135999999988742 23455666666543
Q ss_pred --CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 184 --KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 184 --~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
....+|.+||.+..++ +++++ |+. .+.+..|+.++. .++++..+...++
T Consensus 190 ~~~~v~vI~aTn~~~~ld-~al~r~gRfd~~i~i~~Pd~~~R----~~il~~~l~~~~~ 243 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLD-PALLRPGRFDRQVVVDLPDIKGR----EEILKVHAKNKKL 243 (495)
T ss_pred CCCCeEEEEecCChhhcC-HHHhcCCcceEEEEcCCCCHHHH----HHHHHHHHhcCCC
Confidence 3456788899999999 99987 676 699999999999 8888777766544
No 98
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.70 E-value=6.7e-16 Score=122.81 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHH-HH--------HHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV-RT--------KIKTF 137 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~ 137 (248)
+...+.+..++..+. +++|.||||||||++|+++++.+ +.+++.+++........+ .. ....+
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHH
Confidence 445566666666554 89999999999999999999976 445565655432221111 00 00000
Q ss_pred Hh----hh--hcCCCCCCCC--CCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC----------------CceEEEEEeC
Q 025762 138 AA----VA--VGSGQRRGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFICN 193 (248)
Q Consensus 138 ~~----~~--~~~~~~~~~~--~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~----------------~~~~ii~~~n 193 (248)
.. .. .......+.. ....+++|+|||+++++++.++.|+.+++++. +..++|+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 00 00 0000001111 12245699999999999999999999998642 2456899999
Q ss_pred CC-----cccChHHHHhhhheeeeccCCccccchHHHHHHHHH
Q 025762 194 YI-----SRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYA 231 (248)
Q Consensus 194 ~~-----~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~ 231 (248)
+. ..++ +++.+||..+.+..|+.++. .+++...
T Consensus 160 ~~~~~g~~~l~-~aL~~R~~~i~i~~P~~~~e----~~Il~~~ 197 (262)
T TIGR02640 160 PVEYAGVHETQ-DALLDRLITIFMDYPDIDTE----TAILRAK 197 (262)
T ss_pred Cccccceeccc-HHHHhhcEEEECCCCCHHHH----HHHHHHh
Confidence 64 3567 99999999999999998888 6666654
No 99
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.2e-17 Score=140.90 Aligned_cols=156 Identities=24% Similarity=0.347 Sum_probs=116.2
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
..++||++++..+.+++...+ ..+.+|.||+|||||-||+++|..+++. ...++.++++.......+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~---e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD---EQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC---CccceeechHHHHHHHHHH
Confidence 467899999999988886431 2259999999999999999999999654 3478888888876666665
Q ss_pred HHHHHhHhhh-hc-CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC---
Q 025762 132 TKIKTFAAVA-VG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI--- 195 (248)
Q Consensus 132 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~--- 195 (248)
.++..-.... +. .+.....+...++.|+++||+++..+++.+.|+++|+++. .++.||+|||-.
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~ 647 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEE 647 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHH
Confidence 5554321110 00 1112223455678999999999999999999999999764 456689998721
Q ss_pred -------------------------cccChHHHHhhhh-eeeeccCCcccc
Q 025762 196 -------------------------SRCTFSALFSFLL-FFMFFSLLDQIS 220 (248)
Q Consensus 196 -------------------------~~~~~~~l~~r~~-~i~~~~~~~~~~ 220 (248)
..+. |++++|+. +|.|.+++.+.+
T Consensus 648 i~~~~~~~~~~~~~~~~~~v~~~l~~~F~-PEFLNRid~II~F~~L~~~~l 697 (786)
T COG0542 648 ILRDADGDDFADKEALKEAVMEELKKHFR-PEFLNRIDEIIPFNPLSKEVL 697 (786)
T ss_pred HHhhccccccchhhhHHHHHHHHHHhhCC-HHHHhhcccEEeccCCCHHHH
Confidence 0133 78888988 899999999988
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.70 E-value=1.6e-16 Score=124.10 Aligned_cols=162 Identities=13% Similarity=0.118 Sum_probs=111.9
Q ss_pred cccccc--ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~--g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
.|++++ +++..++.+.+++......+++|+||+|||||++|+++++.+...+ ..++.+++...... .......
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~~--~~~~~~~ 87 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQA--DPEVLEG 87 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHHh--HHHHHhh
Confidence 455554 4677888999887777777899999999999999999999874321 23444554433211 0111111
Q ss_pred hHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhcC-CceEEEEEeCCCc-c---cChHHHHhhhh-
Q 025762 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYS-KVTRFFFICNYIS-R---CTFSALFSFLL- 208 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~--~~~L~~~l~~~~-~~~~ii~~~n~~~-~---~~~~~l~~r~~- 208 (248)
+ ...++|+|||++.++... ++.|+.+++... ....+|++++... . .. +.+.+|+.
T Consensus 88 ~----------------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~-~~L~~r~~~ 150 (226)
T TIGR03420 88 L----------------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL-PDLRTRLAW 150 (226)
T ss_pred c----------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc-HHHHHHHhc
Confidence 0 113599999999997643 788888887643 2346788877432 2 22 67888874
Q ss_pred --eeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 209 --FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 209 --~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
.+.+++++.++. ..++...+.+.++..+++.+.+
T Consensus 151 ~~~i~l~~l~~~e~----~~~l~~~~~~~~~~~~~~~l~~ 186 (226)
T TIGR03420 151 GLVFQLPPLSDEEK----IAALQSRAARRGLQLPDEVADY 186 (226)
T ss_pred CeeEecCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 799999999999 8888888888888877766543
No 101
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.70 E-value=4.6e-16 Score=132.55 Aligned_cols=154 Identities=16% Similarity=0.090 Sum_probs=107.5
Q ss_pred CccccccccHHHHHHHHHHHHc----------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc--
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET----------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-- 125 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~----------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-- 125 (248)
..|+++.|.+.+++.+...... ..+.+++|+||||||||.+|+++|.++ +.+++.++++...
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLFGG 298 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhccc
Confidence 4688889988887766542211 234579999999999999999999998 4566666654321
Q ss_pred ----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhhcCCceEEE
Q 025762 126 ----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYSKVTRFF 189 (248)
Q Consensus 126 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~------------~~~~~L~~~l~~~~~~~~ii 189 (248)
+...++..+..... ....||+|||+|.+.. ...+.++..|++......+|
T Consensus 299 ~vGese~~l~~~f~~A~~--------------~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 299 IVGESESRMRQMIRIAEA--------------LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ccChHHHHHHHHHHHHHh--------------cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 12223333222111 1136999999997632 23455677777666666788
Q ss_pred EEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcC
Q 025762 190 FICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 190 ~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (248)
.+||.+..++ +++.+ ||. .+.+..|+.++. .++++..+.+.+
T Consensus 365 aTTN~~~~Ld-~allR~GRFD~~i~v~lP~~~eR----~~Il~~~l~~~~ 409 (489)
T CHL00195 365 ATANNIDLLP-LEILRKGRFDEIFFLDLPSLEER----EKIFKIHLQKFR 409 (489)
T ss_pred EecCChhhCC-HHHhCCCcCCeEEEeCCcCHHHH----HHHHHHHHhhcC
Confidence 8999999999 99986 887 688999999999 777777766644
No 102
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=6.2e-17 Score=144.27 Aligned_cols=151 Identities=21% Similarity=0.259 Sum_probs=105.2
Q ss_pred cccccHHHHHHHHHHHHcC--------C-CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHH
Q 025762 62 DVAHQEEVVRVLTNTLETA--------N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~--------~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (248)
.++||+.+++.+..++... + ..+++|+||||||||.+|+++|..+ ...++.++++.......+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l------~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh------CCCcEEeechhhcccccHHH
Confidence 5789999999998888632 1 2369999999999999999999998 34666677665433222222
Q ss_pred HHHHhHhhhhcCCCCCC-----CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-
Q 025762 133 KIKTFAAVAVGSGQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI- 195 (248)
Q Consensus 133 ~~~~~~~~~~~~~~~~~-----~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~- 195 (248)
.+..- ....+...+ .....+++|+++||++++++++++.|+++|+++. .++.+|+|||..
T Consensus 533 LiG~~---~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~ 609 (758)
T PRK11034 533 LIGAP---PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred HcCCC---CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCH
Confidence 22110 000000000 0122356899999999999999999999998653 345588888832
Q ss_pred ------------------------cccChHHHHhhhh-eeeeccCCccccch
Q 025762 196 ------------------------SRCTFSALFSFLL-FFMFFSLLDQISFD 222 (248)
Q Consensus 196 ------------------------~~~~~~~l~~r~~-~i~~~~~~~~~~~~ 222 (248)
..+. |++++|+. ++.|.|++.+++.+
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~-pefl~Rid~ii~f~~L~~~~l~~ 660 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFT-PEFRNRLDNIIWFDHLSTDVIHQ 660 (758)
T ss_pred HHHhhcccCcccchhhHHHHHHHHHhcC-HHHHccCCEEEEcCCCCHHHHHH
Confidence 1245 88899997 79999999999933
No 103
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.69 E-value=8.2e-16 Score=128.30 Aligned_cols=158 Identities=22% Similarity=0.235 Sum_probs=106.1
Q ss_pred CCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
....|+++.|.+.+++.+...+.. ..+.+++|+||||||||++|+++++.+ ...++.+.++
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s 213 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGS 213 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehH
Confidence 345789999999999888776532 135579999999999999999999997 3344444443
Q ss_pred CCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHH---Hhhc
Q 025762 123 DDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRT---METY 182 (248)
Q Consensus 123 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~---l~~~ 182 (248)
.... ...++..+... . .....||+|||+|.+. ...+..+..+ ++..
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~A----~----------~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRLA----R----------ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred HHHHHhcchhHHHHHHHHHHH----H----------hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 2211 11122211111 0 1123699999999762 2233344444 4432
Q ss_pred --CCceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 183 --SKVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 183 --~~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
..+..+|++||.+..++ +++++ |+. .|.|+.|+.++. ..+++.++.+.++.
T Consensus 280 ~~~~~v~VI~aTN~~d~LD-pAllR~GRfd~~I~~~~P~~~~R----~~Il~~~~~~~~l~ 335 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLD-PALLRPGRLDRKIEFPLPDRRQK----RLIFQTITSKMNLS 335 (398)
T ss_pred CCCCCEEEEEecCCchhCC-HHHcCCCcccEEEEeCCcCHHHH----HHHHHHHHhcCCCC
Confidence 23566899999999999 99886 776 599999999999 78887777665543
No 104
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.68 E-value=6.8e-16 Score=110.25 Aligned_cols=112 Identities=29% Similarity=0.307 Sum_probs=80.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc--chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEe
Q 025762 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilD 162 (248)
|+|+||||||||++|+.+++.+ ..+++.+++.... ........+..+........ ...||+||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA---------KPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS---------TSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccccccccccccccccccccccccc---------cceeeeec
Confidence 6899999999999999999998 5677888877654 11122222222222211110 13799999
Q ss_pred CCCCCCHHH-----------HHHHHHHHhhcCC---ceEEEEEeCCCcccChHHHH-hhhhe-eee
Q 025762 163 EADSMTEDA-----------QNALRRTMETYSK---VTRFFFICNYISRCTFSALF-SFLLF-FMF 212 (248)
Q Consensus 163 Ei~~l~~~~-----------~~~L~~~l~~~~~---~~~ii~~~n~~~~~~~~~l~-~r~~~-i~~ 212 (248)
|+|.+.... .+.|+..++.... +..+|++||....++ +++. +||.. +.+
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~-~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID-PALLRSRFDRRIEF 130 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC-HHHHSTTSEEEEEE
T ss_pred cchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCC-HhHHhCCCcEEEEc
Confidence 999997665 7888989987765 367899999999999 9999 88874 544
No 105
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=8.4e-16 Score=129.51 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=114.0
Q ss_pred CccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
-.|+++-+.+++..+|..++... .+..+|++||||||||.||+++|++. ...++.+.++..
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPEL 581 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPEL 581 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHH
Confidence 46888888888888887666432 34469999999999999999999998 556777777665
Q ss_pred cchH------HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcCCc--
Q 025762 125 RGIN------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSKV-- 185 (248)
Q Consensus 125 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~~~-- 185 (248)
.+.. .++..++.. ... ..+|||+||+|.|- ..+.|.|+.-|+.....
T Consensus 582 lNkYVGESErAVR~vFqRA---R~s-----------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRA---RAS-----------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred HHHHhhhHHHHHHHHHHHh---hcC-----------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc
Confidence 4333 233333322 111 13799999999883 45788888888876533
Q ss_pred eEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 186 TRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
.-+|.+||.++-++ +++++ |+. .+....|+.++. .++|+.+.+..+.+
T Consensus 648 V~viaATNRPDiID-pAiLRPGRlDk~LyV~lPn~~eR----~~ILK~~tkn~k~p 698 (802)
T KOG0733|consen 648 VYVIAATNRPDIID-PAILRPGRLDKLLYVGLPNAEER----VAILKTITKNTKPP 698 (802)
T ss_pred eEEEeecCCCcccc-hhhcCCCccCceeeecCCCHHHH----HHHHHHHhccCCCC
Confidence 33677789999999 99988 777 577888888999 89998888754433
No 106
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.68 E-value=8.5e-16 Score=124.99 Aligned_cols=170 Identities=14% Similarity=0.051 Sum_probs=104.1
Q ss_pred CCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCcc-cc--ceEEecc-CCC---cchH
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KS--RVLELNA-SDD---RGIN 128 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~-~~--~~~~~~~-~~~---~~~~ 128 (248)
.|+.|.+++|++.+++.+.-++-..+..|++|.|+||||||++|++++..+-+.... .. .+..+.. .+. ....
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 467899999999999988765544445689999999999999999999998321100 00 0000000 000 0000
Q ss_pred H---------------HHHHHHH--hHhh--hhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC------
Q 025762 129 V---------------VRTKIKT--FAAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------ 183 (248)
Q Consensus 129 ~---------------~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------ 183 (248)
. ...++.. +... ........|....++.++|++||++++++..++.|++.|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~ 162 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVERE 162 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEEC
Confidence 0 0000000 0000 0111234555556677899999999999999999999998753
Q ss_pred -------CceEEEEEeCCC-cccChHHHHhhhh-eeeeccCCc-cccchHHHHHHHH
Q 025762 184 -------KVTRFFFICNYI-SRCTFSALFSFLL-FFMFFSLLD-QISFDKEYIRIIY 230 (248)
Q Consensus 184 -------~~~~ii~~~n~~-~~~~~~~l~~r~~-~i~~~~~~~-~~~~~~~~~~l~~ 230 (248)
....++.++|+. ..+. +++.+||. .+.+.++.. ++. .+++..
T Consensus 163 G~~~~~p~rfiviAt~NP~e~~l~-~aLldRF~~~v~v~~~~~~~e~----~~il~~ 214 (334)
T PRK13407 163 GLSIRHPARFVLVGSGNPEEGELR-PQLLDRFGLSVEVRSPRDVETR----VEVIRR 214 (334)
T ss_pred CeEEecCCCEEEEecCCcccCCCC-HHHHhhcceEEEcCCCCcHHHH----HHHHHH
Confidence 122344444643 3577 99999987 577776666 555 455544
No 107
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.67 E-value=8.8e-16 Score=130.76 Aligned_cols=166 Identities=19% Similarity=0.122 Sum_probs=108.9
Q ss_pred hccCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccc
Q 025762 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSR 115 (248)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~ 115 (248)
+......|+++.|.+..++.+...+.. ..+.+++|+||||||||++|+++++.+..... ....
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 445566899999999998888776532 13457999999999999999999999843211 1122
Q ss_pred eEEeccCCCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH------------HHHHHHHH
Q 025762 116 VLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRR 177 (248)
Q Consensus 116 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~------------~~~~~L~~ 177 (248)
++.+..++... ...++..+....... . .....|+||||+|.+.. ...+.|+.
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a-~---------~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKA-S---------DGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHh-h---------cCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 33333322211 111222222111100 0 11246999999998731 13456777
Q ss_pred HHhhcC--CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHh
Q 025762 178 TMETYS--KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 178 ~l~~~~--~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
.|+... ....+|.+||.+..++ +++++ ||. .|.|++|+.++. .++++.++.
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LD-pALlRpGRfD~~I~~~~Pd~e~r----~~Il~~~l~ 379 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMID-PAILRPGRLDVKIRIERPDAEAA----ADIFSKYLT 379 (512)
T ss_pred HhcccccCCceEEEeccCChhhCC-HhhcCccccceEEEeCCCCHHHH----HHHHHHHhh
Confidence 776544 4556888899999999 99997 887 599999999999 777777654
No 108
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.67 E-value=1.4e-16 Score=143.34 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=108.0
Q ss_pred ccccccHHHHHHHHHHHHcC--------CC-CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETA--------NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~--------~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
..++||+.+++.+...+... ++ .+++|+||||||||++|+++++.+ ...++.++++.........
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcccHH
Confidence 46789999999988887642 11 258999999999999999999998 3355666665543222222
Q ss_pred HHHHHhHhh-hhc-CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCCc--
Q 025762 132 TKIKTFAAV-AVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-- 196 (248)
Q Consensus 132 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~~-- 196 (248)
..+...... ... .+.....+...+++|++|||+++++++.++.|+++++++. .++.+|+|||...
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~ 607 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASE 607 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhh
Confidence 222110000 000 0000001112356899999999999999999999998752 3456888887421
Q ss_pred -----------------------ccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHh
Q 025762 197 -----------------------RCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 197 -----------------------~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
.+. |++++|+. ++.|.|++.+++ ..++...+.
T Consensus 608 ~~~~~~~f~~~~~~~~~~~~~~~~f~-pef~~Rid~Vi~F~pLs~e~l----~~Iv~~~L~ 663 (731)
T TIGR02639 608 MSKPPIGFGSENVESKSDKAIKKLFS-PEFRNRLDAIIHFNPLSEEVL----EKIVQKFVD 663 (731)
T ss_pred hhhccCCcchhhhHHHHHHHHHhhcC-hHHHhcCCeEEEcCCCCHHHH----HHHHHHHHH
Confidence 145 78889987 799999999999 555555544
No 109
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.67 E-value=6.2e-16 Score=129.90 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=109.5
Q ss_pred hhccCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEE
Q 025762 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (248)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (248)
.++..+..|.++.|.+.+++.+..++.. ..+.+++|+||||||||++|+++++.+ ...++.
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el------~~~fi~ 247 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET------SATFLR 247 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCCEEE
Confidence 3445557889999999999888877642 134579999999999999999999998 334555
Q ss_pred eccCCCcch------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHH--
Q 025762 119 LNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM-- 179 (248)
Q Consensus 119 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l-- 179 (248)
+..++.... ..++..+... .. ....+++|||+|.+. .+.+..++.++
T Consensus 248 V~~seL~~k~~Ge~~~~vr~lF~~A----~~----------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~ 313 (438)
T PTZ00361 248 VVGSELIQKYLGDGPKLVRELFRVA----EE----------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ 313 (438)
T ss_pred EecchhhhhhcchHHHHHHHHHHHH----Hh----------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH
Confidence 555443211 1122221111 00 123599999998762 22344444444
Q ss_pred -hhc--CCceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 180 -ETY--SKVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 180 -~~~--~~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
+.. .....+|++||....++ +++.+ |+. .|.|++|+.++. ..+++..+.+..+.
T Consensus 314 Ldg~~~~~~V~VI~ATNr~d~LD-paLlRpGRfd~~I~~~~Pd~~~R----~~Il~~~~~k~~l~ 373 (438)
T PTZ00361 314 LDGFDSRGDVKVIMATNRIESLD-PALIRPGRIDRKIEFPNPDEKTK----RRIFEIHTSKMTLA 373 (438)
T ss_pred HhhhcccCCeEEEEecCChHHhh-HHhccCCeeEEEEEeCCCCHHHH----HHHHHHHHhcCCCC
Confidence 322 24567899999999998 98875 776 699999999999 88888777666543
No 110
>PRK09183 transposase/IS protein; Provisional
Probab=99.67 E-value=2e-17 Score=130.93 Aligned_cols=180 Identities=11% Similarity=0.110 Sum_probs=117.3
Q ss_pred cccccccccccCCCCCCccccccc--ccCCCCCchHHHHhhhcccccCccchhhccCCCcccccccc-HHHHHHHHHHHH
Q 025762 2 RANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTLE 78 (248)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~l~~~l~ 78 (248)
+..|++++..+....+++.+++.. ..|...++.+.+.+++. .+.+|+.......+|....+. +..+..|..+-+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~~k---~a~~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~~ 98 (259)
T PRK09183 22 ISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTR---MAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSF 98 (259)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCcHhhcccccCCCCCHHHHHHHhcCCc
Confidence 456667777788888888888876 66667778888888887 777888777766777766554 456677766555
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceE
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 158 (248)
...+.+++|+||||||||||+.+++..+... ++ .+..+...+. .............. .... ......++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-G~--~v~~~~~~~l-----~~~l~~a~~~~~~~--~~~~-~~~~~~dl 167 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA-GI--KVRFTTAADL-----LLQLSTAQRQGRYK--TTLQ-RGVMAPRL 167 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CC--eEEEEeHHHH-----HHHHHHHHHCCcHH--HHHH-HHhcCCCE
Confidence 5667799999999999999999999887432 22 2222222211 00000000000000 0000 00122469
Q ss_pred EEEeCCCCC--CHHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 159 IILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 159 lilDEi~~l--~~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
+||||++.. +....+.|+++++.+++...+|+|||.+
T Consensus 168 LiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 168 LIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred EEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 999999975 4566678999999888777799999853
No 111
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.67 E-value=7.7e-17 Score=120.87 Aligned_cols=121 Identities=27% Similarity=0.372 Sum_probs=74.9
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-------------c
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-------------R 125 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-------------~ 125 (248)
+|++++||+.+++++.-+...+ +|++|+||||||||++|+++...+- ........++..-.. .
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP--~l~~~e~le~~~i~s~~~~~~~~~~~~~~ 76 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLP--PLTEEEALEVSKIYSVAGLGPDEGLIRQR 76 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS----CCEECCESS--S-TT---S---EEEE--
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCC--CCchHHHhhhccccccccCCCCCceecCC
Confidence 4789999999999998776654 5999999999999999999998761 111111111111000 0
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~ 183 (248)
......................++....++++|||+||+..+++...+.|.+.++++.
T Consensus 77 Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~ 134 (206)
T PF01078_consen 77 PFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGE 134 (206)
T ss_dssp -EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSB
T ss_pred CcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCe
Confidence 0000000011111111223446788889999999999999999999999999999864
No 112
>PRK06620 hypothetical protein; Validated
Probab=99.66 E-value=1.6e-15 Score=116.71 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=96.2
Q ss_pred cccccc-cc--HHHHHHHHHHHHcCC--C--CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHH
Q 025762 59 QVKDVA-HQ--EEVVRVLTNTLETAN--C--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (248)
Q Consensus 59 ~~~~~~-g~--~~~~~~l~~~l~~~~--~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
.|++++ |. ..+...+.++...+. . +.++|+||||+|||||++++++... ..+ +.... .. .
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~------~~~--~~~~~-~~----~ 80 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN------AYI--IKDIF-FN----E 80 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC------CEE--cchhh-hc----h
Confidence 455444 43 456666666654321 2 4699999999999999999888751 111 11000 00 0
Q ss_pred HHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCc-eEEEEEeC-CCcccChHHHHhhhh-
Q 025762 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV-TRFFFICN-YISRCTFSALFSFLL- 208 (248)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~-~~ii~~~n-~~~~~~~~~l~~r~~- 208 (248)
... ...++|+|||+|.+... .|+.+++...+. ..++++++ .+..+..++++||+.
T Consensus 81 ----~~~---------------~~~d~lliDdi~~~~~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~ 138 (214)
T PRK06620 81 ----EIL---------------EKYNAFIIEDIENWQEP---ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKS 138 (214)
T ss_pred ----hHH---------------hcCCEEEEeccccchHH---HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhC
Confidence 000 12369999999977432 444444433222 23555553 333332389999988
Q ss_pred --eeeeccCCccccchHHHHHHHHHHhhcCccccCceeeee
Q 025762 209 --FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247 (248)
Q Consensus 209 --~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 247 (248)
++.+++|+.+++ ..++++.+...++..+++.+.|.
T Consensus 139 gl~~~l~~pd~~~~----~~~l~k~~~~~~l~l~~ev~~~L 175 (214)
T PRK06620 139 VLSILLNSPDDELI----KILIFKHFSISSVTISRQIIDFL 175 (214)
T ss_pred CceEeeCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHHH
Confidence 899999999999 99999999988998888877664
No 113
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.66 E-value=2.6e-15 Score=125.13 Aligned_cols=160 Identities=20% Similarity=0.193 Sum_probs=104.7
Q ss_pred CCccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
...++++.|.+.+++.+..++... .+.+++|+||||||||++|+++++.+. ..++.+...+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~~~ 191 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSE 191 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecchHH
Confidence 346789999999999888776421 245699999999999999999999983 3344443332
Q ss_pred Ccch--HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh---c--CCc
Q 025762 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET---Y--SKV 185 (248)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~---~--~~~ 185 (248)
.... ......+........ .....||+|||+|.+. ...+..+..++.. . ..+
T Consensus 192 l~~~~~g~~~~~i~~~f~~a~----------~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELAK----------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHHH----------hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 2110 000011111111000 0123599999999872 3344555555533 2 246
Q ss_pred eEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 186 TRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
..+|++||.+..++ +++.+ |+. .+.|++|+.++. ..+++..+....+
T Consensus 262 v~vI~ttn~~~~ld-~al~r~grfd~~i~v~~P~~~~r----~~Il~~~~~~~~l 311 (364)
T TIGR01242 262 VKVIAATNRPDILD-PALLRPGRFDRIIEVPLPDFEGR----LEILKIHTRKMKL 311 (364)
T ss_pred EEEEEecCChhhCC-hhhcCcccCceEEEeCCcCHHHH----HHHHHHHHhcCCC
Confidence 67899999999998 88875 665 699999999999 8887776655443
No 114
>PRK05642 DNA replication initiation factor; Validated
Probab=99.66 E-value=1.1e-15 Score=119.56 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=106.1
Q ss_pred cccccc-ccH-HHHHHHHHHHHc---CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH
Q 025762 59 QVKDVA-HQE-EVVRVLTNTLET---ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 59 ~~~~~~-g~~-~~~~~l~~~l~~---~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
.|++++ |.. .+...+.++... ....+++|+||+|+|||||++++++.+...+ ..++.++..+.... ....
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~~~~~--~~~~ 91 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDR--GPEL 91 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHHHHhh--hHHH
Confidence 566665 433 333344433322 1235799999999999999999999874322 23444444332111 0111
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEEeCC-Cc---ccChHHHHhh
Q 025762 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNY-IS---RCTFSALFSF 206 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~-~~~ii~~~n~-~~---~~~~~~l~~r 206 (248)
...+ ...++|+|||++.+. +..+..|+.+++.... +..++++++. +. ... +.+.||
T Consensus 92 ~~~~----------------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~-~~L~SR 154 (234)
T PRK05642 92 LDNL----------------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKL-PDLKSR 154 (234)
T ss_pred HHhh----------------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccC-ccHHHH
Confidence 1111 113699999999874 4556779999987665 3457777763 22 234 899999
Q ss_pred h---heeeeccCCccccchHHHHHHHHHHhhcCccccCceeeee
Q 025762 207 L---LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247 (248)
Q Consensus 207 ~---~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 247 (248)
+ ..+.+.+++.++. ..+++..+...++..+++.+.|.
T Consensus 155 l~~gl~~~l~~~~~e~~----~~il~~ka~~~~~~l~~ev~~~L 194 (234)
T PRK05642 155 LTLALVFQMRGLSDEDK----LRALQLRASRRGLHLTDEVGHFI 194 (234)
T ss_pred HhcCeeeecCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHHH
Confidence 8 6799999999999 88988778888888888777663
No 115
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.65 E-value=1.3e-15 Score=138.55 Aligned_cols=162 Identities=23% Similarity=0.301 Sum_probs=109.6
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
..++||+.+++.+..++...+ ..+++|+||+|||||++|+++|+.+.+.. ..++.++++.......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---DAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---cceEEEEchhccccccHH
Confidence 467899999999988875321 12489999999999999999999986543 356666665543322222
Q ss_pred HHHHHhHhhhhcCCCCC-----CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC
Q 025762 132 TKIKTFAAVAVGSGQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI 195 (248)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~ 195 (248)
..+..- ....+... ......++.|+++||+++++++.++.|+++++++. .++.||+|||..
T Consensus 586 ~l~g~~---~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 586 KLIGSP---PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred HhcCCC---CcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence 221110 00000000 01123456899999999999999999999999753 566789998732
Q ss_pred cc-------------------------------------cChHHHHhhh-heeeeccCCccccchHHHHHHHHHHh
Q 025762 196 SR-------------------------------------CTFSALFSFL-LFFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 196 ~~-------------------------------------~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
.. +. |++++|+ .++.|.|++.+++ ..++...+.
T Consensus 663 ~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~-peflnRid~ii~F~pL~~~~l----~~Iv~~~l~ 733 (821)
T CHL00095 663 SKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFR-PEFLNRLDEIIVFRQLTKNDV----WEIAEIMLK 733 (821)
T ss_pred hHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcC-HHHhccCCeEEEeCCCCHHHH----HHHHHHHHH
Confidence 11 23 5788898 5899999999999 555554443
No 116
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.65 E-value=7.1e-15 Score=117.95 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCC-------ccccceEEecc-CCCcchHHHHHHHHHhH
Q 025762 68 EVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE-------LYKSRVLELNA-SDDRGINVVRTKIKTFA 138 (248)
Q Consensus 68 ~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (248)
.+++.+.+.+..++..| .+|+|+.|+||+.++..+++.+.|.. .++..+..++. ......+.++.....+.
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 45678888888877666 55999999999999999999997742 12223444442 22244555666555543
Q ss_pred hhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCcc
Q 025762 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQ 218 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~ 218 (248)
..... .++++|+|||+++.++...+++|++.+|+.++.+.+|++|+.+..+. ++++|||..+.|.+++.+
T Consensus 83 ~~~~~---------~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll-~TI~SRc~~~~f~~l~~~ 152 (299)
T PRK07132 83 FSSFV---------QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVL-PTIVSRCQVFNVKEPDQQ 152 (299)
T ss_pred cCCcc---------cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhCh-HHHHhCeEEEECCCCCHH
Confidence 32211 13568999999999999999999999999999999999998889999 999999999999999999
Q ss_pred ccchHHHHHHHH
Q 025762 219 ISFDKEYIRIIY 230 (248)
Q Consensus 219 ~~~~~~~~~l~~ 230 (248)
++ ...|..
T Consensus 153 ~l----~~~l~~ 160 (299)
T PRK07132 153 KI----LAKLLS 160 (299)
T ss_pred HH----HHHHHH
Confidence 99 666543
No 117
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=4.7e-16 Score=141.04 Aligned_cols=163 Identities=21% Similarity=0.322 Sum_probs=108.1
Q ss_pred ccccccHHHHHHHHHHHHcC--------CC-CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETA--------NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~--------~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
..++||+.+++.+.+++... ++ ..++|+||||||||.+|+++++.+... ...++.++++.........
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~---~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG---EQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC---CcceEEEeHHHhhhhhhhc
Confidence 46789999999988887532 11 148999999999999999999998533 2255566655432222221
Q ss_pred HHHHHhHhh-hhc-CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC---
Q 025762 132 TKIKTFAAV-AVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI--- 195 (248)
Q Consensus 132 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~--- 195 (248)
.++...... ... .+.....+...+++||+|||+++++++.++.|+++++++. .++.||+|||..
T Consensus 643 ~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~ 722 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDL 722 (852)
T ss_pred cccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHH
Confidence 111110000 000 0000011123457899999999999999999999999876 667789998831
Q ss_pred --------------------------cccChHHHHhhhheeeeccCCccccchHHHHH
Q 025762 196 --------------------------SRCTFSALFSFLLFFMFFSLLDQISFDKEYIR 227 (248)
Q Consensus 196 --------------------------~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~ 227 (248)
..+. |++++|+.++.|.|++.+++.+.+...
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-PEflnRi~iI~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 723 IMALCADPETAPDPEALLEALRPELLKVFK-PAFLGRMTVIPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred HHHhccCcccCcchHHHHHHHHHHHHHhcc-HHHhcceeEEEeCCCCHHHHHHHHHHH
Confidence 0144 788899999999999999993333333
No 118
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.64 E-value=6.2e-15 Score=106.98 Aligned_cols=140 Identities=36% Similarity=0.379 Sum_probs=93.4
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcC
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (248)
|++.....+...+......+++|+||||+|||++++.+++.+... ...++.+++................ ..
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~-----~~ 73 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHF-----LV 73 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhh-----hH
Confidence 667788888888877667789999999999999999999998422 2345555554433222222111100 00
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC------CceEEEEEeCCCc--ccChHHHHhhh-heeeec
Q 025762 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------KVTRFFFICNYIS--RCTFSALFSFL-LFFMFF 213 (248)
Q Consensus 145 ~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------~~~~ii~~~n~~~--~~~~~~l~~r~-~~i~~~ 213 (248)
..........+..++++||++.++......+...++... ....+|+++|... .+. +.+.+|+ ..+.++
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~-~~~~~r~~~~i~~~ 150 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD-RALYDRLDIRIVIP 150 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC-hhHHhhhccEeecC
Confidence 000000112235799999999998888888888888764 4667888888766 677 8999998 456654
No 119
>PRK09087 hypothetical protein; Validated
Probab=99.64 E-value=1.5e-15 Score=117.88 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=103.3
Q ss_pred ccccccc---cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 59 QVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 59 ~~~~~~g---~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
.|++++. +..+...+.++. ....+.++|+||+|+|||||+++++... ...+ ++..+. .. ....
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~------~~~~--i~~~~~-~~----~~~~ 84 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS------DALL--IHPNEI-GS----DAAN 84 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc------CCEE--ecHHHc-ch----HHHH
Confidence 5666663 344555555443 3334459999999999999999998875 1111 222111 00 0111
Q ss_pred HhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCC-c--c-cChHHHHhhh---
Q 025762 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-VTRFFFICNYI-S--R-CTFSALFSFL--- 207 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~-~--~-~~~~~l~~r~--- 207 (248)
... .++|+|||++.+.. .+..|+.+++...+ ...+|++++.. . . .. +.++||+
T Consensus 85 ~~~-----------------~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~-~dL~SRl~~g 145 (226)
T PRK09087 85 AAA-----------------EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKL-PDLKSRLKAA 145 (226)
T ss_pred hhh-----------------cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhcccc-ccHHHHHhCC
Confidence 100 14899999998853 45678888876665 34577777632 2 2 35 8899998
Q ss_pred heeeeccCCccccchHHHHHHHHHHhhcCccccCceeeee
Q 025762 208 LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247 (248)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 247 (248)
..+.+.+|+.+++ ..++++.+...++..+++.+.|.
T Consensus 146 l~~~l~~pd~e~~----~~iL~~~~~~~~~~l~~ev~~~L 181 (226)
T PRK09087 146 TVVEIGEPDDALL----SQVIFKLFADRQLYVDPHVVYYL 181 (226)
T ss_pred ceeecCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHHH
Confidence 6899999999999 99999999999999988887764
No 120
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.64 E-value=7.7e-15 Score=116.63 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=76.1
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC------------CCcccChHHHHhhhheeeeccCCccccchH
Q 025762 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRCTFSALFSFLLFFMFFSLLDQISFDK 223 (248)
Q Consensus 156 ~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n------------~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~ 223 (248)
.+||||||+|.|+-+...+|.+.||..-. ..+|++|| .++.++ ..|++|..++.-.|++.+++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a-PIii~AtNRG~~kiRGTd~~sPhGIP-~DlLDRllII~t~py~~~Ei--- 366 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELA-PIIILATNRGMTKIRGTDIESPHGIP-LDLLDRLLIISTRPYSREEI--- 366 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccC-cEEEEEcCCceeeecccCCcCCCCCC-HhhhhheeEEecCCCCHHHH---
Confidence 38999999999999999999999997543 34788887 367888 99999999999999999999
Q ss_pred HHHHHHHHHhhcCccccCceeee
Q 025762 224 EYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
..+++..++.+++..+++++.|
T Consensus 367 -reIi~iRa~ee~i~l~~~Ale~ 388 (450)
T COG1224 367 -REIIRIRAKEEDIELSDDALEY 388 (450)
T ss_pred -HHHHHHhhhhhccccCHHHHHH
Confidence 9999999999999999988865
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.64 E-value=1.9e-15 Score=116.87 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=101.9
Q ss_pred Ccccccc-cc--HHHHHHHHHHHHcCC--CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHH
Q 025762 58 KQVKDVA-HQ--EEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (248)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~~~--~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (248)
..|+.++ |. +.+............ ...++|+||+|+|||||++++++.+... .....++.++..+.... +..
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~~~~v~y~~~~~f~~~--~~~ 81 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-HPGKRVVYLSAEEFIRE--FAD 81 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS-EEEEEHHHHHHH--HHH
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc-cccccceeecHHHHHHH--HHH
Confidence 4666664 53 344444444333332 2359999999999999999999987321 11234444444332110 111
Q ss_pred HH-----HHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhcCC-ceEEEEEeCC-C---cccCh
Q 025762 133 KI-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALRRTMETYSK-VTRFFFICNY-I---SRCTF 200 (248)
Q Consensus 133 ~~-----~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~--~~~~L~~~l~~~~~-~~~ii~~~n~-~---~~~~~ 200 (248)
.. ..+.. .. ...++|+|||++.+... .++.|+.+++.... ...+|++++. + ..+.
T Consensus 82 ~~~~~~~~~~~~-~~-----------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~- 148 (219)
T PF00308_consen 82 ALRDGEIEEFKD-RL-----------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL- 148 (219)
T ss_dssp HHHTTSHHHHHH-HH-----------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS--
T ss_pred HHHcccchhhhh-hh-----------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC-
Confidence 10 00100 01 12479999999999754 47888888887643 3457888853 2 2355
Q ss_pred HHHHhhhh---eeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 201 SALFSFLL---FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 201 ~~l~~r~~---~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+.+.||+. .+.+.+|+.++. ..+++..+...+++.+++.+.|
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r----~~il~~~a~~~~~~l~~~v~~~ 193 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDR----RRILQKKAKERGIELPEEVIEY 193 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHH----HHHHHHHHHHTT--S-HHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHH----HHHHHHHHHHhCCCCcHHHHHH
Confidence 88999976 699999999999 9999999999999988877665
No 122
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.64 E-value=2.8e-15 Score=120.65 Aligned_cols=85 Identities=13% Similarity=0.045 Sum_probs=64.9
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCC------------CcccChHHHHhhhheeeeccCCccccchH
Q 025762 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY------------ISRCTFSALFSFLLFFMFFSLLDQISFDK 223 (248)
Q Consensus 156 ~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~------------~~~~~~~~l~~r~~~i~~~~~~~~~~~~~ 223 (248)
.+||||||+|.|+-+....|.+++|..-. ..+|++||. ++.+| ..+++|+.++...|++.+|+
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~s-PiiIlATNRg~~~irGt~~~sphGiP-~DlLDRllII~t~py~~~ei--- 353 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELS-PIIILATNRGITKIRGTDIISPHGIP-LDLLDRLLIIRTKPYSEEEI--- 353 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT---HHHHTTEEEEEE----HHHH---
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCC-cEEEEecCceeeeccCccCcCCCCCC-cchHhhcEEEECCCCCHHHH---
Confidence 47999999999999999999999987543 447888883 56788 89999999999999999999
Q ss_pred HHHHHHHHHhhcCccccCceeee
Q 025762 224 EYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
.+++.-.|..|+++.+++++.+
T Consensus 354 -~~Il~iR~~~E~v~i~~~al~~ 375 (398)
T PF06068_consen 354 -KQILKIRAKEEDVEISEDALDL 375 (398)
T ss_dssp -HHHHHHHHHHCT--B-HHHHHH
T ss_pred -HHHHHhhhhhhcCcCCHHHHHH
Confidence 9999999999999999887754
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=99.64 E-value=4.5e-15 Score=130.34 Aligned_cols=154 Identities=21% Similarity=0.184 Sum_probs=103.7
Q ss_pred CccccccccHHHHHHHHHHHH---c---------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 58 KQVKDVAHQEEVVRVLTNTLE---T---------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
..|+++.|.+++++.+...+. . ....+++|+||||||||++|+++|..+ ..+++.+++++..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is~s~f~ 253 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSISGSEFV 253 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeeeccHHHHH
Confidence 468889998888877665542 1 124479999999999999999999988 4556666655432
Q ss_pred ch------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HH---HHHHHHHHHhhcC--
Q 025762 126 GI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------ED---AQNALRRTMETYS-- 183 (248)
Q Consensus 126 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~---~~~~L~~~l~~~~-- 183 (248)
.. ..++..+... . ....+||+|||+|.+. .. ..+.|+..++...
T Consensus 254 ~~~~g~~~~~vr~lF~~A----~----------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKA----K----------ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHhhhhhHHHHHHHHHHH----h----------cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 11 1111111111 1 1123699999999873 22 2344444454433
Q ss_pred CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcC
Q 025762 184 KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (248)
....+|.+||.+..++ +++++ |+. .+.|..|+.++. ..+++.++....
T Consensus 320 ~~ViVIaaTN~~~~LD-~ALlRpGRFd~~I~v~lPd~~~R----~~IL~~~l~~~~ 370 (638)
T CHL00176 320 KGVIVIAATNRVDILD-AALLRPGRFDRQITVSLPDREGR----LDILKVHARNKK 370 (638)
T ss_pred CCeeEEEecCchHhhh-hhhhccccCceEEEECCCCHHHH----HHHHHHHHhhcc
Confidence 3456888889988888 99987 565 699999999999 888887776644
No 124
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.6e-15 Score=123.38 Aligned_cols=155 Identities=21% Similarity=0.142 Sum_probs=109.0
Q ss_pred CccccccccHHHHHHHHHHH---HcC---------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-
Q 025762 58 KQVKDVAHQEEVVRVLTNTL---ETA---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l---~~~---------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~- 124 (248)
-.|+++.|-++++.+|.+.+ ... -+..|+|+||||||||.||+++|.++ +++++....+..
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA------~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA------GVPFFYASGSEFD 374 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc------CCCeEeccccchh
Confidence 35889999888887666554 321 23469999999999999999999999 666666666543
Q ss_pred -----cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcCCc--e
Q 025762 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSKV--T 186 (248)
Q Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~~~--~ 186 (248)
.+...+++++..... . ..+||||||+|.+. ....|.|+--|+.+..+ .
T Consensus 375 Em~VGvGArRVRdLF~aAk~---~-----------APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKA---R-----------APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred hhhhcccHHHHHHHHHHHHh---c-----------CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 233344444443221 1 13699999999873 33566777777777654 3
Q ss_pred EEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 187 RFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 187 ~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
.+|-+||.+..++ ++|.+ ||+ ++..+.|+-.-. .++|+.++.+-.+
T Consensus 441 IvigATNfpe~LD-~AL~RPGRFD~~v~Vp~PDv~GR----~eIL~~yl~ki~~ 489 (752)
T KOG0734|consen 441 IVIGATNFPEALD-KALTRPGRFDRHVTVPLPDVRGR----TEILKLYLSKIPL 489 (752)
T ss_pred EEEeccCChhhhh-HHhcCCCccceeEecCCCCcccH----HHHHHHHHhcCCc
Confidence 4566679999999 99987 787 588888888888 7777777665443
No 125
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.63 E-value=1.6e-15 Score=137.97 Aligned_cols=181 Identities=16% Similarity=0.111 Sum_probs=123.0
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC----ccccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (248)
....++.+..++..++.++|++..++++...+......|++|+||||||||++|+++++.+.... ..+..++.++.
T Consensus 163 ~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 163 KYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred HHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 44567888899999999999999999999999888888999999999999999999999984321 12345555544
Q ss_pred CCCc----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhcCCceEEE
Q 025762 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFF 189 (248)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------~~~~~L~~~l~~~~~~~~ii 189 (248)
.... ........+.......... ....||||||+|.+.. +..+.|...++.+ ...+|
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~---------~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~I 311 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQ---------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCV 311 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHc---------CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEE
Confidence 4321 1112222222222211110 1235999999999852 3567777777553 45577
Q ss_pred EEeCCCc-----ccChHHHHhhhheeeeccCCccccchHHHHHHHHHH----hhcCccccCc
Q 025762 190 FICNYIS-----RCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAS----TLKFLEGFGL 242 (248)
Q Consensus 190 ~~~n~~~-----~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~ 242 (248)
.+|+... ..+ +++.+||..+.+..|+.++. ..+++.+. ...++...+.
T Consensus 312 gaTt~~e~r~~~~~d-~al~rRf~~i~v~eP~~~~~----~~iL~~l~~~~e~~~~v~~~d~ 368 (857)
T PRK10865 312 GATTLDEYRQYIEKD-AALERRFQKVFVAEPSVEDT----IAILRGLKERYELHHHVQITDP 368 (857)
T ss_pred EcCCCHHHHHHhhhc-HHHHhhCCEEEeCCCCHHHH----HHHHHHHhhhhccCCCCCcCHH
Confidence 7777543 467 99999999999999999999 55554443 3334444443
No 126
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.63 E-value=1.8e-14 Score=120.53 Aligned_cols=178 Identities=18% Similarity=0.170 Sum_probs=110.2
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHc----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC---ccccceEEec
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELN 120 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~---~~~~~~~~~~ 120 (248)
...+...|.|. .++|++..++.|..++.. ..+.+++|+||||||||++++++++.+.... .....++.++
T Consensus 5 ~~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 5 RDLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred hhhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 34556667665 468999999888877753 4556899999999999999999998873211 1124667777
Q ss_pred cCCCcch-HHHHHHHHHhHh--hhhc-CCCC---------CCCCCCCCceEEEEeCCCCCCH---HHHHHHHHH--Hhhc
Q 025762 121 ASDDRGI-NVVRTKIKTFAA--VAVG-SGQR---------RGGYPCPPYKIIILDEADSMTE---DAQNALRRT--METY 182 (248)
Q Consensus 121 ~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~---------~~~~~~~~~~vlilDEi~~l~~---~~~~~L~~~--l~~~ 182 (248)
+...... ..+......+.. .... .+.. .......+..||+|||+|.+.. +....|+++ ....
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~ 161 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL 161 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC
Confidence 7665432 233333333321 0000 0000 0000123356899999999942 233334433 1122
Q ss_pred C-CceEEEEEeCCCc---ccChHHHHhhhh--eeeeccCCccccchHHHHHHHHHHh
Q 025762 183 S-KVTRFFFICNYIS---RCTFSALFSFLL--FFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 183 ~-~~~~ii~~~n~~~---~~~~~~l~~r~~--~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
+ .+..+|+++|.+. .+. +.+.+|+. .+.|+|++.+++ .+++...+.
T Consensus 162 ~~~~v~lI~i~n~~~~~~~l~-~~~~s~~~~~~i~f~p~~~~e~----~~il~~r~~ 213 (365)
T TIGR02928 162 DNAKVGVIGISNDLKFRENLD-PRVKSSLCEEEIIFPPYDAEEL----RDILENRAE 213 (365)
T ss_pred CCCeEEEEEEECCcchHhhcC-HHHhccCCcceeeeCCCCHHHH----HHHHHHHHH
Confidence 2 3456888888754 466 78888874 699999999999 777776654
No 127
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.63 E-value=6.6e-15 Score=132.89 Aligned_cols=156 Identities=20% Similarity=0.200 Sum_probs=109.2
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
...|+++.|.+.+++.|.+.+.. ....+++|+||||||||++|++++.++ ...++.+.+++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~ 522 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPE 522 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHH
Confidence 34788899999998888776642 134469999999999999999999998 44566666654
Q ss_pred Ccc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC------------HHHHHHHHHHHhhc--C
Q 025762 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETY--S 183 (248)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~------------~~~~~~L~~~l~~~--~ 183 (248)
... ...++..+..... ....||||||+|.+. ....+.|+..|+.. .
T Consensus 523 l~~~~vGese~~i~~~f~~A~~--------------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQ--------------AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHh--------------cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 321 1222322222111 123699999998772 23456677777643 3
Q ss_pred CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 184 KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
....+|.+||.+..++ +++++ ||. .+.+++|+.++. .++++....+..+
T Consensus 589 ~~v~vI~aTn~~~~ld-~allRpgRfd~~i~v~~Pd~~~R----~~i~~~~~~~~~~ 640 (733)
T TIGR01243 589 SNVVVIAATNRPDILD-PALLRPGRFDRLILVPPPDEEAR----KEIFKIHTRSMPL 640 (733)
T ss_pred CCEEEEEeCCChhhCC-HhhcCCCccceEEEeCCcCHHHH----HHHHHHHhcCCCC
Confidence 4566888899999999 99986 887 688999998888 7777766554443
No 128
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.63 E-value=8.1e-15 Score=113.85 Aligned_cols=124 Identities=12% Similarity=0.071 Sum_probs=96.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----------------cccceEEeccCC-CcchHHHHHHHHHhHhhhhcC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPEL----------------YKSRVLELNASD-DRGINVVRTKIKTFAAVAVGS 144 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 144 (248)
.+.++|+||+|+||..+|.++++.+.|... ...++..+.+.. ....+.+++....+......
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e- 85 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE- 85 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh-
Confidence 345999999999999999999999977642 122344433322 24556666665554432211
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccC
Q 025762 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSL 215 (248)
Q Consensus 145 ~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~ 215 (248)
.+.++|+|||++++|.....|+|++.+|+.+.++.+|++|+.+..++ ++++|||+.+.|.++
T Consensus 86 --------~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lL-pTI~SRCq~~~~~~~ 147 (261)
T PRK05818 86 --------SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNIL-NTILSRCVQYVVLSK 147 (261)
T ss_pred --------cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCc-hHhhhheeeeecCCh
Confidence 12468999999999999999999999999999999999999999999 999999999999887
No 129
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.62 E-value=1.7e-14 Score=118.71 Aligned_cols=149 Identities=22% Similarity=0.153 Sum_probs=99.8
Q ss_pred cccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHH-HHHHhHhh
Q 025762 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-KIKTFAAV 140 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 140 (248)
.++|+++++..+..++..++ +++|.||||||||.+|+.+|..+ +.++..+.+........+.. ........
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhhhhc
Confidence 36789999888887877777 89999999999999999999999 45666677654422221111 10000000
Q ss_pred -hhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC------------CceEEEEEeC-----CCcccChHH
Q 025762 141 -AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------KVTRFFFICN-----YISRCTFSA 202 (248)
Q Consensus 141 -~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------------~~~~ii~~~n-----~~~~~~~~~ 202 (248)
........+....+-..++++|||++.++..++.|+.+|+++. ....++.|+| ....++ ++
T Consensus 97 ~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~-eA 175 (329)
T COG0714 97 EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLP-EA 175 (329)
T ss_pred cCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCC-HH
Confidence 0111112222222222699999999999999999999998732 2223455557 456678 99
Q ss_pred HHhhh-heeeeccCCccc
Q 025762 203 LFSFL-LFFMFFSLLDQI 219 (248)
Q Consensus 203 l~~r~-~~i~~~~~~~~~ 219 (248)
+++|| ..+.+..|..++
T Consensus 176 ~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 176 LLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred HHhhEEEEEecCCCCchH
Confidence 99999 578888884443
No 130
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.62 E-value=9.5e-15 Score=117.93 Aligned_cols=136 Identities=10% Similarity=0.058 Sum_probs=95.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc------chHHHHHHHHHhHhhhhcCCCCCCCCCCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
+..++|+||||||||.+|++++.++ +..++.++.++.. +...++..+......... ...
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~---------~~a 212 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKK---------KGK 212 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhc---------cCC
Confidence 3459999999999999999999999 4556666665432 334455554443322101 112
Q ss_pred ceEEEEeCCCCCCH-----------HH-HHHHHHHHhh--------------cCCceEEEEEeCCCcccChHHHHh--hh
Q 025762 156 YKIIILDEADSMTE-----------DA-QNALRRTMET--------------YSKVTRFFFICNYISRCTFSALFS--FL 207 (248)
Q Consensus 156 ~~vlilDEi~~l~~-----------~~-~~~L~~~l~~--------------~~~~~~ii~~~n~~~~~~~~~l~~--r~ 207 (248)
.+||||||+|.+.. .. ...|+++++. ......||.+||++..++ ++|++ |+
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LD-pALlRpGRf 291 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLY-APLIRDGRM 291 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCC-HhHcCCCCC
Confidence 47999999997632 12 2467777653 134456899999999999 99999 88
Q ss_pred heeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 208 LFFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
..+ +..|+.++. ..+++.+++..++.
T Consensus 292 Dk~-i~lPd~e~R----~eIL~~~~r~~~l~ 317 (413)
T PLN00020 292 EKF-YWAPTREDR----IGVVHGIFRDDGVS 317 (413)
T ss_pred Cce-eCCCCHHHH----HHHHHHHhccCCCC
Confidence 864 457888999 89998888887765
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=4e-15 Score=135.83 Aligned_cols=154 Identities=22% Similarity=0.314 Sum_probs=105.2
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
..++||+.+++.+...+.... ...++|+||+|||||++|++++..+.+.. ..++.++++.........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~---~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE---DAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhhcccchHH
Confidence 467899999999988886531 23599999999999999999999985542 356667766543322222
Q ss_pred HHHHHhHhhhhcCCCC-----CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC
Q 025762 132 TKIKTFAAVAVGSGQR-----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI 195 (248)
Q Consensus 132 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~ 195 (248)
..+.... ...++. .......++.||++||+++++++.++.|+++++++. .++.||+|||..
T Consensus 642 ~l~g~~~---g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g 718 (852)
T TIGR03346 642 RLIGAPP---GYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred HhcCCCC---CccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcc
Confidence 2211000 000000 000122345799999999999999999999998763 455689998852
Q ss_pred cc-------------------------cChHHHHhhhh-eeeeccCCccccc
Q 025762 196 SR-------------------------CTFSALFSFLL-FFMFFSLLDQISF 221 (248)
Q Consensus 196 ~~-------------------------~~~~~l~~r~~-~i~~~~~~~~~~~ 221 (248)
.. +. |++++|+. ++.|.|++.+++.
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~-pel~~Rid~IivF~PL~~e~l~ 769 (852)
T TIGR03346 719 SQFIQELAGGDDYEEMREAVMEVLRAHFR-PEFLNRIDEIVVFHPLGREQIA 769 (852)
T ss_pred hHhHhhhcccccHHHHHHHHHHHHHhhcC-HHHhcCcCeEEecCCcCHHHHH
Confidence 11 33 67778885 7999999999993
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=8.2e-15 Score=133.80 Aligned_cols=185 Identities=15% Similarity=0.086 Sum_probs=122.0
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC----ccccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (248)
....++.+..++..++.++|++..++++...+......|++|+||||||||++++++++.+.... .....++.++.
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 44457888889999999999999999999999888888999999999999999999999873321 12334555543
Q ss_pred CCCc----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhhcCCceEEE
Q 025762 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFF 189 (248)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------~~~~~~L~~~l~~~~~~~~ii 189 (248)
.... ........+..+...... .....||||||+|.+. .+..+.|...++. +...+|
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~---------~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~I 306 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTK---------SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCI 306 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHh---------cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEE
Confidence 3221 111222222222221111 0123699999999884 2345666665543 345677
Q ss_pred EEeCCC-----cccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 190 FICNYI-----SRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 190 ~~~n~~-----~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
.+|+.. ...+ +++.+||..+.+..|+.++....+..+..++....++...+.
T Consensus 307 gaTt~~e~r~~~~~d-~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~ 363 (852)
T TIGR03346 307 GATTLDEYRKYIEKD-AALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDP 363 (852)
T ss_pred EeCcHHHHHHHhhcC-HHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHH
Confidence 777753 3467 999999999999999999994444433334444444544443
No 133
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.4e-15 Score=111.54 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=106.4
Q ss_pred ccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 59 QVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
+..++-|-+-.++.+.+++.- ..++.++++||||||||.|++++|+.. ...++.+.++...
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t------~a~firvvgsefv 226 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGSEFV 226 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc------chheeeeccHHHH
Confidence 456667777777777666542 245579999999999999999999987 3445555554431
Q ss_pred ------chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHH---hhcC--
Q 025762 126 ------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTM---ETYS-- 183 (248)
Q Consensus 126 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l-----------~~~~~~~L~~~l---~~~~-- 183 (248)
+...+++.+...... ...++||||+|.+ +.+++..|++++ +.+.
T Consensus 227 qkylgegprmvrdvfrlaken--------------apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKEN--------------APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred HHHhccCcHHHHHHHHHHhcc--------------CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 222333333321111 1259999999976 244555555555 4433
Q ss_pred CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCccc
Q 025762 184 KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEG 239 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (248)
.+..+|++||..+.++ |+|++ |.. .|+|+-++..+. +-++..++.+-++..
T Consensus 293 ~nvkvimatnradtld-pallrpgrldrkiefplpdrrqk----rlvf~titskm~ls~ 346 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLD-PALLRPGRLDRKIEFPLPDRRQK----RLVFSTITSKMNLSD 346 (408)
T ss_pred cceEEEEecCcccccC-HhhcCCccccccccCCCCchhhh----hhhHHhhhhcccCCc
Confidence 4567999999999999 99987 555 599998888888 778887877766553
No 134
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.60 E-value=2.4e-14 Score=116.81 Aligned_cols=169 Identities=17% Similarity=0.105 Sum_probs=107.5
Q ss_pred CCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccc-cceEEeccCCCc-chH------
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-SRVLELNASDDR-GIN------ 128 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~-~~~~~~~~~~~~-~~~------ 128 (248)
...|.+++||++++..|...+......+++|.|++|||||++|++++..+.+..... .++. ..+.... ...
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~~~~~~ 91 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDEVREAI 91 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchhhhhhh
Confidence 358999999999999999888888888999999999999999999998874322110 0110 0000000 000
Q ss_pred ----------------------HHHHHHHHh--Hhh--hhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc
Q 025762 129 ----------------------VVRTKIKTF--AAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (248)
Q Consensus 129 ----------------------~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~ 182 (248)
....++..+ ... ........+....+++++|++||++++++..++.|++.|++.
T Consensus 92 ~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~ 171 (350)
T CHL00081 92 QNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG 171 (350)
T ss_pred cccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 000011100 000 001111345556777899999999999999999999999864
Q ss_pred CC-----------ceEEEEE--eCCC-cccChHHHHhhhh-eeeeccCCc-cccchHHHHHHHHH
Q 025762 183 SK-----------VTRFFFI--CNYI-SRCTFSALFSFLL-FFMFFSLLD-QISFDKEYIRIIYA 231 (248)
Q Consensus 183 ~~-----------~~~ii~~--~n~~-~~~~~~~l~~r~~-~i~~~~~~~-~~~~~~~~~~l~~~ 231 (248)
.. ..+++++ .|+. ..+. +++.+|+. .+.+..++. ++. .+++++.
T Consensus 172 ~~~ier~G~s~~~p~rfiviaT~np~eg~l~-~~LldRf~l~i~l~~~~~~~~e----~~il~~~ 231 (350)
T CHL00081 172 WNTVEREGISIRHPARFVLVGSGNPEEGELR-PQLLDRFGMHAEIRTVKDPELR----VKIVEQR 231 (350)
T ss_pred CeEEeeCCeeeecCCCEEEEeccCcccCCCC-HHHHHHhCceeecCCCCChHHH----HHHHHhh
Confidence 21 1233333 3443 3577 99999988 588888874 555 4555543
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=9.2e-15 Score=130.54 Aligned_cols=184 Identities=13% Similarity=0.048 Sum_probs=118.0
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC----ccccceEEeccCC
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~~~ 123 (248)
...+.+.-+...++.++|.+..++.+.+.+......|++|+||||||||++|+++++.+.... .....++.++...
T Consensus 173 ~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ 252 (758)
T PRK11034 173 TTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_pred HHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH
Confidence 334555555567788999999999999988888788999999999999999999998763221 1122333333222
Q ss_pred Cc----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhcCCceEEEE
Q 025762 124 DR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFF 190 (248)
Q Consensus 124 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~---------~~~~~~L~~~l~~~~~~~~ii~ 190 (248)
.. ........+..+...... ....+|||||+|.+- .+..+.|..+++. +...+|.
T Consensus 253 llaG~~~~Ge~e~rl~~l~~~l~~----------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIg 320 (758)
T PRK11034 253 LLAGTKYRGDFEKRFKALLKQLEQ----------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIG 320 (758)
T ss_pred HhcccchhhhHHHHHHHHHHHHHh----------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEe
Confidence 11 111122222222111111 123599999999771 2334456656654 3455777
Q ss_pred EeCCC-----cccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 191 ICNYI-----SRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 191 ~~n~~-----~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
+||.. ...+ +++.+||..+.+.+|+.++..+++..+...+....++.+.+.++
T Consensus 321 ATt~~E~~~~~~~D-~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al 378 (758)
T PRK11034 321 STTYQEFSNIFEKD-RALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAV 378 (758)
T ss_pred cCChHHHHHHhhcc-HHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHH
Confidence 77753 3467 99999999999999999999444444444555566666665554
No 136
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.60 E-value=1.3e-15 Score=109.90 Aligned_cols=114 Identities=25% Similarity=0.283 Sum_probs=76.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCC--CCceEEEE
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--PPYKIIIL 161 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vlil 161 (248)
+|+|+||||||||++|+.+++.+ ...+..+.+........+. ..............+.... .+..+++|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~---g~~~~~~~~~~~~~~~l~~a~~~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLI---GSYDPSNGQFEFKDGPLVRAMRKGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHH---CEEET-TTTTCEEE-CCCTTHHEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccce---eeeeecccccccccccccccccceeEEEE
Confidence 58999999999999999999999 5566667776654443322 2211111111111222221 25689999
Q ss_pred eCCCCCCHHHHHHHHHHHhhcC-------------C------ceEEEEEeCCCc----ccChHHHHhhh
Q 025762 162 DEADSMTEDAQNALRRTMETYS-------------K------VTRFFFICNYIS----RCTFSALFSFL 207 (248)
Q Consensus 162 DEi~~l~~~~~~~L~~~l~~~~-------------~------~~~ii~~~n~~~----~~~~~~l~~r~ 207 (248)
||+++.+++.++.|+.+++... . ..++|+++|+.. .++ +++.+||
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~-~al~~Rf 139 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELS-PALLDRF 139 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTC-HHHHTT-
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCC-HHHHhhC
Confidence 9999999999999999997643 1 267899999877 788 9999986
No 137
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.8e-14 Score=108.63 Aligned_cols=153 Identities=23% Similarity=0.295 Sum_probs=102.7
Q ss_pred ccccccccHHHHHHHHHHHH-------------cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 59 QVKDVAHQEEVVRVLTNTLE-------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~-------------~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
..+-+-|-+.+++.+.+.+. ...+..++++||||+|||.+|+++++.. .+.++.+..+...
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsgselv 218 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSELV 218 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEechHHHH
Confidence 33334456777776665543 2356679999999999999999999998 4466666665431
Q ss_pred ------chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh---c--C
Q 025762 126 ------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET---Y--S 183 (248)
Q Consensus 126 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~---~--~ 183 (248)
+...+++++-...... ..++|+||+|.+. .+.+...+++++. + .
T Consensus 219 qk~igegsrmvrelfvmareha--------------psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHA--------------PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcC--------------CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 1122222222111111 2599999999883 4566666655553 3 2
Q ss_pred CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcC
Q 025762 184 KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (248)
.+..+|++||..+-++ +++++ |.. .|+|+||+.+.. .++|+-...+-+
T Consensus 285 knikvimatnridild-~allrpgridrkiefp~p~e~ar----~~ilkihsrkmn 335 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILD-PALLRPGRIDRKIEFPPPNEEAR----LDILKIHSRKMN 335 (404)
T ss_pred cceEEEEecccccccc-HhhcCCCcccccccCCCCCHHHH----HHHHHHhhhhhc
Confidence 5667999999999998 99987 555 599999999988 777766555444
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=2.1e-14 Score=130.80 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=106.7
Q ss_pred cccccccHHHHHHHHHHHHcC-------C-C-CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHH
Q 025762 60 VKDVAHQEEVVRVLTNTLETA-------N-C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~-------~-~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (248)
...++||+.+++.+...+... . + ..++|+||+|||||++|++++..+.+.. ..++.++++........
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~---~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD---DAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC---CcEEEEEhHHhhhhhhH
Confidence 456889999998888887542 1 1 2589999999999999999999885432 24566666544222111
Q ss_pred HHHHHHhHhhhhcCCCC-----CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCC
Q 025762 131 RTKIKTFAAVAVGSGQR-----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~ 194 (248)
...+... ....+.. .......+++||+|||++++++..++.|+++++++. .++.||+|||.
T Consensus 644 ~~LiG~~---pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 644 SRLVGAP---PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHHhCCC---CcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 1111100 0000000 001112345799999999999999999999998752 33458888885
Q ss_pred Cc-------------------------ccChHHHHhhh-heeeeccCCccccchHHHHHHHHHH
Q 025762 195 IS-------------------------RCTFSALFSFL-LFFMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 195 ~~-------------------------~~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
.. .+. |++++|+ .++.|.|++.+++ ..++...+
T Consensus 721 g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-PELlnRld~iivF~PL~~edl----~~Iv~~~L 779 (857)
T PRK10865 721 GSDLIQERFGELDYAHMKELVLGVVSHNFR-PEFINRIDEVVVFHPLGEQHI----ASIAQIQL 779 (857)
T ss_pred chHHHHHhccccchHHHHHHHHHHHccccc-HHHHHhCCeeEecCCCCHHHH----HHHHHHHH
Confidence 21 234 7899999 5899999999999 44444443
No 139
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.60 E-value=2.5e-14 Score=116.73 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=101.6
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc-------CCCccc--cce------E---E--
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-------GPELYK--SRV------L---E-- 118 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~-------~~~~~~--~~~------~---~-- 118 (248)
.|..++||+.++..|.-.+-.....+++|.|++|+|||+++++++..+. ++.... .+. . .
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 5778999999999987777776677899999999999999999998872 111100 000 0 0
Q ss_pred ------------eccC------CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 025762 119 ------------LNAS------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (248)
Q Consensus 119 ------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~ 180 (248)
.+.+ +..+...+...+ .........+....+++++|++||++.+++..++.|+++|+
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l-----~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~ 156 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERAL-----TEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAA 156 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHh-----hcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHH
Confidence 0000 000000000000 00111223455556778999999999999999999999998
Q ss_pred hcC-------------CceEEEEEeCCC-cccChHHHHhhhh-eeeeccCCc-cccchHHHHHHHH
Q 025762 181 TYS-------------KVTRFFFICNYI-SRCTFSALFSFLL-FFMFFSLLD-QISFDKEYIRIIY 230 (248)
Q Consensus 181 ~~~-------------~~~~ii~~~n~~-~~~~~~~l~~r~~-~i~~~~~~~-~~~~~~~~~~l~~ 230 (248)
+.. ....++.+.|.. ..+. +++.+|+. .+.+.++.. ++. .+++++
T Consensus 157 ~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~-~~LldRf~l~i~l~~p~~~eer----~eIL~~ 217 (337)
T TIGR02030 157 SGWNVVEREGISIRHPARFVLVGSGNPEEGELR-PQLLDRFGLHAEIRTVRDVELR----VEIVER 217 (337)
T ss_pred hCCeEEEECCEEEEcCCCEEEEeccccccCCCC-HHHHhhcceEEECCCCCCHHHH----HHHHHh
Confidence 652 112233334543 3577 99999998 477777765 444 455544
No 140
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-14 Score=116.51 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=97.5
Q ss_pred CccccccccHHHHHHHHHHHHc---------CC---CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET---------AN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~---------~~---~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
-.|+++.|..++++-|.+++-. +. =..|+++||||||||.||+++|.+. +..++.+..+...
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstlt 282 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLT 282 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhh
Confidence 4788999999999988888632 11 1259999999999999999999998 4566666665543
Q ss_pred chH-----HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC------------CHHHHHHHHHHHhhcC---Cc
Q 025762 126 GIN-----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM------------TEDAQNALRRTMETYS---KV 185 (248)
Q Consensus 126 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l------------~~~~~~~L~~~l~~~~---~~ 185 (248)
+.. .+-.++-.++.... ..+|||||||.+ +..+-+.|+-.|+.-. ..
T Consensus 283 SKwRGeSEKlvRlLFemARfyA-------------PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~ 349 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYA-------------PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLEN 349 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhC-------------CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccc
Confidence 321 12222222222211 148999999988 2446678888887543 12
Q ss_pred ---eEEEEEeCCCcccChHHHHhhhh-eeeeccCCcccc
Q 025762 186 ---TRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQIS 220 (248)
Q Consensus 186 ---~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~ 220 (248)
+.++.+||.+..++ +++++|+. .|.++-|+.+..
T Consensus 350 ~k~VmVLAATN~PWdiD-EAlrRRlEKRIyIPLP~~~~R 387 (491)
T KOG0738|consen 350 SKVVMVLAATNFPWDID-EALRRRLEKRIYIPLPDAEAR 387 (491)
T ss_pred ceeEEEEeccCCCcchH-HHHHHHHhhheeeeCCCHHHH
Confidence 23455578999999 99999998 466655555554
No 141
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.59 E-value=2.3e-14 Score=120.37 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=94.5
Q ss_pred ccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEe-ccCCCcchHHHHHHHHHhHh
Q 025762 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL-NASDDRGINVVRTKIKTFAA 139 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 139 (248)
..++|++++++.+..++..+. |++|.||||||||++|++++..+............+ .+.+..+...+......
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~--- 94 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE--- 94 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhc---
Confidence 357899999999998887776 999999999999999999999873221111111111 11111111101110000
Q ss_pred hhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC----C-----ceE-EEEEeCCCc---ccChHHHHhh
Q 025762 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----K-----VTR-FFFICNYIS---RCTFSALFSF 206 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~----~-----~~~-ii~~~n~~~---~~~~~~l~~r 206 (248)
........+... ...++|+||++++++..++.|+.+|+++. + +.+ ++++||+.. ... +++.+|
T Consensus 95 -g~f~r~~~G~L~--~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~l-eAL~DR 170 (498)
T PRK13531 95 -GRYQRLTSGYLP--EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSL-EALYDR 170 (498)
T ss_pred -CchhhhcCCccc--cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCch-HHhHhh
Confidence 000001111111 22499999999999999999999997655 1 122 455555322 233 589999
Q ss_pred hh-eeeeccCCc-cccchHHHHHHHH
Q 025762 207 LL-FFMFFSLLD-QISFDKEYIRIIY 230 (248)
Q Consensus 207 ~~-~i~~~~~~~-~~~~~~~~~~l~~ 230 (248)
+. .+.+++++. ++. .++|..
T Consensus 171 Fliri~vp~l~~~~~e----~~lL~~ 192 (498)
T PRK13531 171 MLIRLWLDKVQDKANF----RSMLTS 192 (498)
T ss_pred EEEEEECCCCCchHHH----HHHHHc
Confidence 86 478888864 454 455543
No 142
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.59 E-value=8.5e-15 Score=122.55 Aligned_cols=108 Identities=24% Similarity=0.273 Sum_probs=70.3
Q ss_pred cccccHHHHHHHHHHHHcC----------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 62 DVAHQEEVVRVLTNTLETA----------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~----------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
.++||+.+++.+..++..+ ...+++|+||||||||++|++++..+ ..+++.+++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------~~pf~~id~~~l~ 145 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------DVPFAIADATTLT 145 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh------CCCceecchhhcc
Confidence 4789999999887665321 23579999999999999999999988 4455555554322
Q ss_pred ch----HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh
Q 025762 126 GI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMET 181 (248)
Q Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------------~~~~~L~~~l~~ 181 (248)
.. ......+....... ......+.+++++|||+|.++. .+|+.|+++|+.
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~------~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAA------DYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred cCCcccchHHHHHHHHHHhc------cccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 11 11122222111100 0111123467999999999975 389999999984
No 143
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.59 E-value=1.4e-14 Score=127.80 Aligned_cols=169 Identities=20% Similarity=0.134 Sum_probs=107.5
Q ss_pred ccccccHHHHHHHHHHHHc----CCCCe-EEEEcCCCCcHHHHHHHHHHHhcC----CCccccceEEeccCCCcchHHH-
Q 025762 61 KDVAHQEEVVRVLTNTLET----ANCPH-MLFYGPPGTGKTTTALAIAHQLFG----PELYKSRVLELNASDDRGINVV- 130 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~----~~~~~-ill~Gp~G~GKT~la~~la~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 130 (248)
+.++|++..++.|..++.. ..+.+ ++|+|+||||||++++.+.+++.. .......++.++|........+
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4567898888877766643 23334 579999999999999999988732 1222356788888765443332
Q ss_pred HHHHHHhHhhhhcCCC---------CC-CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC---CceEEEEEeCC---
Q 025762 131 RTKIKTFAAVAVGSGQ---------RR-GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNY--- 194 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~---~~~~ii~~~n~--- 194 (248)
..+...+.......+. .. .........||||||+|.+....+..|+.+++... ....+|.++|.
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 2222222111000000 00 00011223589999999998767778888877533 23446777775
Q ss_pred CcccChHHHHhhhh--eeeeccCCccccchHHHHHHHHHHhh
Q 025762 195 ISRCTFSALFSFLL--FFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 195 ~~~~~~~~l~~r~~--~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
+..+. +.+.+|+. .+.|.||+.+++ .++|...+..
T Consensus 915 perLd-PRLRSRLg~eeIvF~PYTaEQL----~dILk~RAe~ 951 (1164)
T PTZ00112 915 PERLI-PRCRSRLAFGRLVFSPYKGDEI----EKIIKERLEN 951 (1164)
T ss_pred chhhh-hhhhhccccccccCCCCCHHHH----HHHHHHHHHh
Confidence 45566 88888876 499999999999 7777766654
No 144
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.58 E-value=8.8e-14 Score=116.27 Aligned_cols=186 Identities=18% Similarity=0.258 Sum_probs=119.1
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHH-----cC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEE
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-----TA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~-----~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (248)
+...+|.++|+|...+++..++..+.++..|+. .. +.+-++|+||+||||||+++.+++++ +..+.+
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel------g~~~~E 140 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL------GYQLIE 140 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh------Cceeee
Confidence 445799999999999999999999999999987 22 33459999999999999999999998 333333
Q ss_pred ec-------cCCCcc--------hHHHHHHHHHhHhhh--hcCCCCCCCCCCCCceEEEEeCCCCCCHH-HHHHHHH---
Q 025762 119 LN-------ASDDRG--------INVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTED-AQNALRR--- 177 (248)
Q Consensus 119 ~~-------~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vlilDEi~~l~~~-~~~~L~~--- 177 (248)
.. +..... ...-......+.... .+.-+..+....+...+|+|||+...... ....+.+
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR 220 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH
Confidence 32 111110 001111122222222 23333445555666789999998876433 2233333
Q ss_pred HHhhcCCceEEEEEeCC-------CcccChHHH--HhhhheeeeccCCccccchHHHHHHHHHHhhcCccccC
Q 025762 178 TMETYSKVTRFFFICNY-------ISRCTFSAL--FSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFG 241 (248)
Q Consensus 178 ~l~~~~~~~~ii~~~n~-------~~~~~~~~l--~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (248)
.+-.......|+++|+. ..+..+..+ ..|...|.|+|..+.-+ .+.|+++|.+++-+..+
T Consensus 221 ~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~M----KK~L~ric~~e~~~~s~ 289 (634)
T KOG1970|consen 221 LYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIM----KKFLKRICRIEANKKSG 289 (634)
T ss_pred HHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHH----HHHHHHHHHHhcccccC
Confidence 33333333446666632 122211222 33566899999999999 99999999999887664
No 145
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.57 E-value=9.7e-14 Score=119.14 Aligned_cols=179 Identities=20% Similarity=0.296 Sum_probs=111.1
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcC-----CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEec
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~-----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (248)
....+|.++|+|...+++..++..++.+..|+... ..+.++|+||+|||||++++.+++++ +..+.+..
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el------g~~v~Ew~ 77 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL------GFEVQEWI 77 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh------CCeeEEec
Confidence 45679999999999999999999999999998753 23358999999999999999999998 33333332
Q ss_pred cCCC-----------cc----hHHHHHHHHHhHhhhhc-CCC----CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 025762 121 ASDD-----------RG----INVVRTKIKTFAAVAVG-SGQ----RRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (248)
Q Consensus 121 ~~~~-----------~~----~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~ 180 (248)
.+.. .+ ..........+...... ... ..+.....+..||+|+|+..+.......|..++.
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~ 157 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALR 157 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHH
Confidence 2111 00 00001111112111011 011 1122223467899999998874333344444444
Q ss_pred ----hcCCceEEEEEe--C------CCc--------ccChHHHHhh--hheeeeccCCccccchHHHHHHHHHHhhc
Q 025762 181 ----TYSKVTRFFFIC--N------YIS--------RCTFSALFSF--LLFFMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 181 ----~~~~~~~ii~~~--n------~~~--------~~~~~~l~~r--~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
.......|+++| . ... -++ +.+... +..|.|+|....-+ ...|.+++..|
T Consensus 158 ~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~-~~il~~~~i~~I~FNpIa~T~m----kKaL~rI~~~E 229 (519)
T PF03215_consen 158 QYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFP-KEILNHPGITRIKFNPIAPTFM----KKALKRILKKE 229 (519)
T ss_pred HHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccC-HHHHhCCCceEEEecCCCHHHH----HHHHHHHHHHH
Confidence 333313334344 1 111 234 666654 55799999999999 99999999988
No 146
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-14 Score=124.62 Aligned_cols=146 Identities=24% Similarity=0.223 Sum_probs=102.0
Q ss_pred ccCCCccccccccHHHHHHHHHHHHcC------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 54 KYRPKQVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
+...-.|+++-|-++++..|...+.-. ....|+|+||||||||.+|+|+|.++ ...++.+.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlSVKG 738 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLSVKG 738 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEeecC
Confidence 344458999999999999988776431 23469999999999999999999998 445555555
Q ss_pred CCC------cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH-------------HHHHHHHHHHhhc
Q 025762 122 SDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------------DAQNALRRTMETY 182 (248)
Q Consensus 122 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~-------------~~~~~L~~~l~~~ 182 (248)
++. .+...+++.+.... .+..+|||+||+|.+.+ .+...|+.-|+..
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR--------------~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgl 804 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERAR--------------SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGL 804 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhh--------------ccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcc
Confidence 443 33444555544422 23347999999999842 3556666666655
Q ss_pred CC----ceEEEEEeCCCcccChHHHHh--hhhe-eeeccCCcccc
Q 025762 183 SK----VTRFFFICNYISRCTFSALFS--FLLF-FMFFSLLDQIS 220 (248)
Q Consensus 183 ~~----~~~ii~~~n~~~~~~~~~l~~--r~~~-i~~~~~~~~~~ 220 (248)
+. ..-+|-+||.++-++ ++|++ ||+. +.+.+.+.++-
T Consensus 805 s~~~s~~VFViGATNRPDLLD-pALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 805 SDSSSQDVFVIGATNRPDLLD-PALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred cCCCCCceEEEecCCCccccC-hhhcCCCccceeEEecCCccHHH
Confidence 43 334677789999999 99988 8986 45555555444
No 147
>PHA02244 ATPase-like protein
Probab=99.57 E-value=7.1e-14 Score=113.58 Aligned_cols=135 Identities=14% Similarity=0.047 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCC
Q 025762 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (248)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (248)
..+.+++..+. +++|+||||||||++|+++++.+ ..+++.++... . .. .... .......+...+..
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In~l~--d--~~-~L~G-~i~~~g~~~dgpLl 175 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMNAIM--D--EF-ELKG-FIDANGKFHETPFY 175 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecCh--H--HH-hhcc-cccccccccchHHH
Confidence 34555554444 89999999999999999999997 44455554210 0 00 0000 00000000000000
Q ss_pred CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEEeCCC-----------cccChHHHHhhhh
Q 025762 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI-----------SRCTFSALFSFLL 208 (248)
Q Consensus 151 ~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~-----------~~~~~ii~~~n~~-----------~~~~~~~l~~r~~ 208 (248)
....+.++|+|||++.++++++..|..+++.+ ++..++|+++|.. ..+. +++++||.
T Consensus 176 ~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~-~AllDRFv 254 (383)
T PHA02244 176 EAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKID-GATLDRFA 254 (383)
T ss_pred HHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccC-HHHHhhcE
Confidence 01234579999999999999999999999742 3667899999962 4567 99999999
Q ss_pred eeeeccCCcccc
Q 025762 209 FFMFFSLLDQIS 220 (248)
Q Consensus 209 ~i~~~~~~~~~~ 220 (248)
.+.|..+++.|.
T Consensus 255 ~I~~dyp~~~E~ 266 (383)
T PHA02244 255 PIEFDYDEKIEH 266 (383)
T ss_pred EeeCCCCcHHHH
Confidence 999988875433
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=1e-14 Score=123.55 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEe
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilD 162 (248)
..++|+||+|+|||||++++++.+...+ ..++.+...+... .+...+..-...... ......++|+||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~~~f~~--~~~~~l~~~~~~~f~-------~~~~~~dvLiID 209 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRSELFTE--HLVSAIRSGEMQRFR-------QFYRNVDALFIE 209 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeHHHHHH--HHHHHHhcchHHHHH-------HHcccCCEEEEc
Confidence 4599999999999999999999984432 2344444332111 111111000000000 001134799999
Q ss_pred CCCCCC--HHHHHHHHHHHhhcC-CceEEEEEeCCC----cccChHHHHhhh---heeeeccCCccccchHHHHHHHHHH
Q 025762 163 EADSMT--EDAQNALRRTMETYS-KVTRFFFICNYI----SRCTFSALFSFL---LFFMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 163 Ei~~l~--~~~~~~L~~~l~~~~-~~~~ii~~~n~~----~~~~~~~l~~r~---~~i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
|++.+. ...++.|+.+++... ....+|++|+.. ..+. +++.+|+ ..+.+.+|+.++. ..+++..+
T Consensus 210 Diq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~-~rL~SR~~~Gl~~~l~~pd~e~r----~~iL~~k~ 284 (445)
T PRK12422 210 DIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAME-ERLISRFEWGIAIPLHPLTKEGL----RSFLERKA 284 (445)
T ss_pred chhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhH-HHHHhhhcCCeEEecCCCCHHHH----HHHHHHHH
Confidence 999985 346777888876543 234578888753 3455 8999998 4799999999999 99999999
Q ss_pred hhcCccccCceeeee
Q 025762 233 TLKFLEGFGLSLTYS 247 (248)
Q Consensus 233 ~~~~~~~~~~~l~~~ 247 (248)
...++..+++.+.|.
T Consensus 285 ~~~~~~l~~evl~~l 299 (445)
T PRK12422 285 EALSIRIEETALDFL 299 (445)
T ss_pred HHcCCCCCHHHHHHH
Confidence 999998888877653
No 149
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.57 E-value=4.1e-14 Score=113.70 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=104.9
Q ss_pred CCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH-H
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-I 134 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 134 (248)
.|..-..++-+.+..+.+..++...+ +++|.||||||||++++.++..+ +.+++.+++........+-.. .
T Consensus 40 ~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l------~~~~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 40 VPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARL------NWPCVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHH------CCCeEEEEecCCCChhhcCCCce
Confidence 34333455667777777877776544 89999999999999999999999 455555655443222111000 0
Q ss_pred HHhHhhhhcCCCCCCCCC--CCCceEEEEeCCCCCCHHHHHHHHHHHhhc--------------CCceEEEEEeCCC---
Q 025762 135 KTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYI--- 195 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~vlilDEi~~l~~~~~~~L~~~l~~~--------------~~~~~ii~~~n~~--- 195 (248)
..............+... .....+|++||++..++++++.|..++|.. ++..++|.|+|+.
T Consensus 112 ~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G 191 (327)
T TIGR01650 112 IVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG 191 (327)
T ss_pred eeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC
Confidence 000000000001112111 123467999999999999999999999842 1345678888863
Q ss_pred ---------cccChHHHHhhhhe-eeeccCCccccchHHHHHHHHH
Q 025762 196 ---------SRCTFSALFSFLLF-FMFFSLLDQISFDKEYIRIIYA 231 (248)
Q Consensus 196 ---------~~~~~~~l~~r~~~-i~~~~~~~~~~~~~~~~~l~~~ 231 (248)
..++ +++++||.+ +.+..++.++- .+++...
T Consensus 192 d~~G~y~Gt~~l~-~A~lDRF~i~~~~~Yp~~e~E----~~Il~~~ 232 (327)
T TIGR01650 192 DTTGLYHGTQQIN-QAQMDRWSIVTTLNYLEHDNE----AAIVLAK 232 (327)
T ss_pred CCCcceeeeecCC-HHHHhheeeEeeCCCCCHHHH----HHHHHhh
Confidence 2467 999999974 68999998887 6776554
No 150
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.56 E-value=1.2e-13 Score=116.65 Aligned_cols=180 Identities=21% Similarity=0.210 Sum_probs=111.4
Q ss_pred ccCccchhhccCCCccccccccHHHHHHHHHHHHc----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEec
Q 025762 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (248)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (248)
+....++...+.| +.++|++..++.|...+.. ..+.+++|+||||+|||++++.+++.+.... ....++.++
T Consensus 17 ~~~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in 92 (394)
T PRK00411 17 FKDEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYIN 92 (394)
T ss_pred eCChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEE
Confidence 3445555555555 3467888888887777633 3556899999999999999999999874332 234567777
Q ss_pred cCCCcchH-HHHHHHHHhHhhhh-cCCCC---------CCCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHhhcCC-
Q 025762 121 ASDDRGIN-VVRTKIKTFAAVAV-GSGQR---------RGGYPCPPYKIIILDEADSMT----EDAQNALRRTMETYSK- 184 (248)
Q Consensus 121 ~~~~~~~~-~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~vlilDEi~~l~----~~~~~~L~~~l~~~~~- 184 (248)
+....... .+......+..... ..+.. .......+..||+|||+|.+. .+....|++.++....
T Consensus 93 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~ 172 (394)
T PRK00411 93 CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGA 172 (394)
T ss_pred CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCC
Confidence 76543322 22222222211000 00000 000012234689999999985 3455666666655443
Q ss_pred ceEEEEEeCCC---cccChHHHHhhhh--eeeeccCCccccchHHHHHHHHHHh
Q 025762 185 VTRFFFICNYI---SRCTFSALFSFLL--FFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 185 ~~~ii~~~n~~---~~~~~~~l~~r~~--~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
+..+|+++|.. ..+. +.+.+|+. .+.|+|++.+++ .++++..+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~-~~~~s~~~~~~i~f~py~~~e~----~~il~~r~~ 221 (394)
T PRK00411 173 RIGVIGISSDLTFLYILD-PRVKSVFRPEEIYFPPYTADEI----FDILKDRVE 221 (394)
T ss_pred eEEEEEEECCcchhhhcC-HHHHhcCCcceeecCCCCHHHH----HHHHHHHHH
Confidence 45688888864 3355 77777764 689999999999 666666654
No 151
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.8e-14 Score=116.30 Aligned_cols=151 Identities=16% Similarity=0.189 Sum_probs=108.8
Q ss_pred CCccccccccHHHHHHH----HHHHHcC---------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVL----TNTLETA---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l----~~~l~~~---------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
|..|+.++=+.+.++.| ...+... -.+..||+||||||||+++.|+|..+ ..+++.++.+.
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L------~ydIydLeLt~ 270 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL------NYDIYDLELTE 270 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc------CCceEEeeecc
Confidence 35677777665555544 4443321 13369999999999999999999999 77888888877
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-------H-----------HHHHHHHHHHhhcCCc
Q 025762 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-------E-----------DAQNALRRTMETYSKV 185 (248)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-------~-----------~~~~~L~~~l~~~~~~ 185 (248)
......++.++... ..+.||+|.|||..- . -....|++.++.....
T Consensus 271 v~~n~dLr~LL~~t----------------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs 334 (457)
T KOG0743|consen 271 VKLDSDLRHLLLAT----------------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS 334 (457)
T ss_pred ccCcHHHHHHHHhC----------------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc
Confidence 76666666665542 235699999999761 0 1356799999876543
Q ss_pred ----eEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhh
Q 025762 186 ----TRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 186 ----~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
..+|+|||...+++ |||++ |++ ++.+...+.+.. .....+++..
T Consensus 335 cg~ERIivFTTNh~EkLD-PALlRpGRmDmhI~mgyCtf~~f----K~La~nYL~~ 385 (457)
T KOG0743|consen 335 CGDERIIVFTTNHKEKLD-PALLRPGRMDMHIYMGYCTFEAF----KTLASNYLGI 385 (457)
T ss_pred CCCceEEEEecCChhhcC-HhhcCCCcceeEEEcCCCCHHHH----HHHHHHhcCC
Confidence 35899999999999 99999 666 588888877777 5555555443
No 152
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=3.2e-14 Score=122.84 Aligned_cols=172 Identities=14% Similarity=0.103 Sum_probs=110.9
Q ss_pred Ccccccc-ccHH--HHHHHHHHHHcC-C-CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH--HH
Q 025762 58 KQVKDVA-HQEE--VVRVLTNTLETA-N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN--VV 130 (248)
Q Consensus 58 ~~~~~~~-g~~~--~~~~l~~~l~~~-~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 130 (248)
..|++++ |... +...+....... . ...++|+|++|+|||||++++++.+... .....+..+...+..... .+
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yitaeef~~el~~al 363 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSSEEFTNEFINSI 363 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHH
Confidence 4677766 4322 222333333321 1 2249999999999999999999998321 112344444443321110 00
Q ss_pred HH-HHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCc-eEEEEEeCCC----cccChHH
Q 025762 131 RT-KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKV-TRFFFICNYI----SRCTFSA 202 (248)
Q Consensus 131 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~-~~ii~~~n~~----~~~~~~~ 202 (248)
.. ....+.. . ....++|+|||++.+. ...++.|+.+++..+.. ..+|++||.. ..+. +.
T Consensus 364 ~~~~~~~f~~-~-----------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~-~r 430 (617)
T PRK14086 364 RDGKGDSFRR-R-----------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLE-DR 430 (617)
T ss_pred HhccHHHHHH-H-----------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhcc-HH
Confidence 00 0000100 0 1124799999999984 34567888899877653 4578888754 2456 89
Q ss_pred HHhhhh---eeeeccCCccccchHHHHHHHHHHhhcCccccCceeeee
Q 025762 203 LFSFLL---FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247 (248)
Q Consensus 203 l~~r~~---~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 247 (248)
|.||+. .+.+.+|+.+.. .++|+..+...++..+++.+.|.
T Consensus 431 L~SRf~~GLvv~I~~PD~EtR----~aIL~kka~~r~l~l~~eVi~yL 474 (617)
T PRK14086 431 LRNRFEWGLITDVQPPELETR----IAILRKKAVQEQLNAPPEVLEFI 474 (617)
T ss_pred HHhhhhcCceEEcCCCCHHHH----HHHHHHHHHhcCCCCCHHHHHHH
Confidence 999986 689999999999 99999999999999988877763
No 153
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.56 E-value=1.7e-15 Score=113.23 Aligned_cols=118 Identities=23% Similarity=0.267 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCC
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (248)
++..+..+...-+...+.+++|+||||||||+||.++++.+...+ + .+..+...+ ++..+........
T Consensus 31 ~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~--~v~f~~~~~---------L~~~l~~~~~~~~ 98 (178)
T PF01695_consen 31 DKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRKG-Y--SVLFITASD---------LLDELKQSRSDGS 98 (178)
T ss_dssp ---HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHH---------HHHHHHCCHCCTT
T ss_pred HHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-c--ceeEeecCc---------eeccccccccccc
Confidence 345555665555556777999999999999999999999985432 2 222222221 1111110000000
Q ss_pred CCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 146 QRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 146 ~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
.........+.++|||||++..+ ....+.|+++++.++.+..+|+|||..
T Consensus 99 ~~~~~~~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 99 YEELLKRLKRVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp HCHHHHHHHTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred hhhhcCccccccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 00000001234799999988764 556777999999888777899999953
No 154
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.55 E-value=5.2e-14 Score=117.28 Aligned_cols=109 Identities=25% Similarity=0.273 Sum_probs=68.7
Q ss_pred ccccccHHHHHHHHHHHHc----------C--------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 61 KDVAHQEEVVRVLTNTLET----------A--------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~----------~--------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
..++||+.+++.+..++.. . ...+++|+||||||||++|++++..+ ..++..+++.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l------~~pf~~~da~ 150 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL------NVPFAIADAT 150 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc------CCCeEEechh
Confidence 3568999999988776631 1 12479999999999999999999887 3344444433
Q ss_pred CCcc----hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh
Q 025762 123 DDRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMET 181 (248)
Q Consensus 123 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------------~~~~~L~~~l~~ 181 (248)
.... .......+....... ......+..++++|||+|++++ .+++.|+++|+.
T Consensus 151 ~L~~~gyvG~d~e~~L~~~~~~~------~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG 221 (413)
T TIGR00382 151 TLTEAGYVGEDVENILLKLLQAA------DYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEG 221 (413)
T ss_pred hccccccccccHHHHHHHHHHhC------cccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhc
Confidence 2211 001112222111110 0111123456999999999976 689999999963
No 155
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=3.6e-14 Score=120.63 Aligned_cols=175 Identities=10% Similarity=0.135 Sum_probs=107.7
Q ss_pred CCcccccc-ccHH--HHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH--H
Q 025762 57 PKQVKDVA-HQEE--VVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN--V 129 (248)
Q Consensus 57 ~~~~~~~~-g~~~--~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~ 129 (248)
+..|+.++ |... +......+.... ....++|+|++|+|||||++++++.+.... ....++.+.+.+....- .
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHH
Confidence 35777666 4422 333333333322 123599999999999999999999773211 12344444443321110 0
Q ss_pred HHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCce-EEEEEeCCCc----ccChHH
Q 025762 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKVT-RFFFICNYIS----RCTFSA 202 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~~-~ii~~~n~~~----~~~~~~ 202 (248)
+......+..... .....++|+|||++.+. ...++.|+.+++...... .+|++++.+. .+. +.
T Consensus 190 l~~~~~~~~~~~~---------~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~-~r 259 (450)
T PRK14087 190 LQKTHKEIEQFKN---------EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFD-NR 259 (450)
T ss_pred HHHhhhHHHHHHH---------HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhcc-HH
Confidence 1000000000000 01124699999999986 567888988888766443 4788877532 345 88
Q ss_pred HHhhhh---eeeeccCCccccchHHHHHHHHHHhhcCc--cccCceeee
Q 025762 203 LFSFLL---FFMFFSLLDQISFDKEYIRIIYASTLKFL--EGFGLSLTY 246 (248)
Q Consensus 203 l~~r~~---~i~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~ 246 (248)
|.+|+. .+.+.+|+.++. .+++++.+...|+ ..+++.+.|
T Consensus 260 L~SR~~~Gl~~~L~~pd~e~r----~~iL~~~~~~~gl~~~l~~evl~~ 304 (450)
T PRK14087 260 LITRFNMGLSIAIQKLDNKTA----TAIIKKEIKNQNIKQEVTEEAINF 304 (450)
T ss_pred HHHHHhCCceeccCCcCHHHH----HHHHHHHHHhcCCCCCCCHHHHHH
Confidence 999986 699999999999 9999999988775 455555443
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.55 E-value=3.2e-14 Score=129.60 Aligned_cols=180 Identities=14% Similarity=0.054 Sum_probs=118.9
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC----CccccceEEeccCCCc
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDDR 125 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~----~~~~~~~~~~~~~~~~ 125 (248)
.+.+.-+...++.++|++..++.+.+.+......|++|+||||||||++|+++|..+... ......++.++.....
T Consensus 168 ~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 168 NLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred HHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 444555556788899999999999999988888899999999999999999999997422 1234566777654321
Q ss_pred ----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhcCCceEEEEEeC
Q 025762 126 ----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 126 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
........+..+....... ...||||||+|.+.. +..+.|...+..+ ...+|.+|+
T Consensus 248 ag~~~~ge~e~rl~~i~~~~~~~----------~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt 315 (821)
T CHL00095 248 AGTKYRGEFEERLKRIFDEIQEN----------NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATT 315 (821)
T ss_pred ccCCCccHHHHHHHHHHHHHHhc----------CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCC
Confidence 1222333333333221111 135999999987632 3456666666643 355777777
Q ss_pred CC-----cccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 194 YI-----SRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 194 ~~-----~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
.. .... +++.+||..+.+.+++.++..+.+......+....++...++
T Consensus 316 ~~ey~~~ie~D-~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~de 368 (821)
T CHL00095 316 LDEYRKHIEKD-PALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDK 368 (821)
T ss_pred HHHHHHHHhcC-HHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 43 3466 899999999999999999983333333333334444444443
No 157
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.55 E-value=2.5e-14 Score=105.79 Aligned_cols=146 Identities=17% Similarity=0.161 Sum_probs=90.3
Q ss_pred ccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhh
Q 025762 63 VAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (248)
Q Consensus 63 ~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (248)
++|....++.+.+.+.. ....+|+|+|++||||+.+|+++.... .....+++.++|...........++......
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAALPEELLESELFGHEKGA 77 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS-HHHHHHHHHEBCSSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhhhcchhhhhhhcccccc
Confidence 35666666666555533 334589999999999999999998843 2235689999999764332222222211000
Q ss_pred hhc-CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------cccChH
Q 025762 141 AVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRCTFS 201 (248)
Q Consensus 141 ~~~-~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~~~~~ 201 (248)
..+ .....+....+..+.|+|||++.|++..|..|+++++... -++++|++|+.. ..+. +
T Consensus 78 ~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr-~ 156 (168)
T PF00158_consen 78 FTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFR-E 156 (168)
T ss_dssp STTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS--H
T ss_pred ccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCCh-H
Confidence 000 0112234446678999999999999999999999998642 356789998743 4455 7
Q ss_pred HHHhhhheeee
Q 025762 202 ALFSFLLFFMF 212 (248)
Q Consensus 202 ~l~~r~~~i~~ 212 (248)
.|..|...+.+
T Consensus 157 dLy~rL~~~~i 167 (168)
T PF00158_consen 157 DLYYRLNVFTI 167 (168)
T ss_dssp HHHHHHTTEEE
T ss_pred HHHHHhceEec
Confidence 77777765543
No 158
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.55 E-value=1.4e-13 Score=105.53 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=117.2
Q ss_pred cCCCccccccccHHHHHHHHH----HHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHH
Q 025762 55 YRPKQVKDVAHQEEVVRVLTN----TLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~----~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (248)
..+-.+++++|-+.+++.|.+ .+......|+|++|+.|||||++++++.......+ ..++++...+......+
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~~L~~l~~l 97 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKEDLGDLPEL 97 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHHHhccHHHH
Confidence 344578889998877766644 44455667899999999999999999999985554 47888888777666555
Q ss_pred HHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHh----hcCCceEEEEEeCCCcccC------
Q 025762 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTME----TYSKVTRFFFICNYISRCT------ 199 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-~~~~~~L~~~l~----~~~~~~~ii~~~n~~~~~~------ 199 (248)
...+... ..+-|||+||+.-=. ...-..|..+|+ ..+.+..+..|||..+-++
T Consensus 98 ~~~l~~~----------------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~ 161 (249)
T PF05673_consen 98 LDLLRDR----------------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDR 161 (249)
T ss_pred HHHHhcC----------------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhc
Confidence 5544421 124589999965332 334455666665 4566776777777422221
Q ss_pred ----------------hHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 200 ----------------FSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 200 ----------------~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
.-+|.+||. .+.|.++++++. .++++..+.+.|++.+.+
T Consensus 162 ~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~Y----L~IV~~~~~~~g~~~~~e 217 (249)
T PF05673_consen 162 EDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEY----LAIVRHYAERYGLELDEE 217 (249)
T ss_pred cCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHH----HHHHHHHHHHcCCCCCHH
Confidence 113556777 699999999999 999999999999998753
No 159
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.55 E-value=3.8e-14 Score=119.88 Aligned_cols=173 Identities=10% Similarity=0.085 Sum_probs=107.0
Q ss_pred cccccc-ccHH--HHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH
Q 025762 59 QVKDVA-HQEE--VVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 59 ~~~~~~-g~~~--~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
.|+.++ |... +...+..+.... ....++|+||+|+|||||++++++.+... .....++.+++.+... ..
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~~~~~~-----~~ 181 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSSEKFTN-----DF 181 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEHHHHHH-----HH
Confidence 566644 5433 233333333332 12358999999999999999999998432 1123445554433211 11
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEEeCCC----cccChHHHHhh
Q 025762 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI----SRCTFSALFSF 206 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--~~~~~L~~~l~~~~~-~~~ii~~~n~~----~~~~~~~l~~r 206 (248)
...+...... .. .. .....++|+|||++.+.. ..+..|+.+++.... ...+|+++|.. ..+. +.+.+|
T Consensus 182 ~~~~~~~~~~-~~-~~--~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~-~~l~SR 256 (405)
T TIGR00362 182 VNALRNNKME-EF-KE--KYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLE-ERLRSR 256 (405)
T ss_pred HHHHHcCCHH-HH-HH--HHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhh-hhhhhh
Confidence 1110000000 00 00 001236999999998853 456778888876543 34477777643 2355 789999
Q ss_pred hh---eeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 207 LL---FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 207 ~~---~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+. .+.|.+|+.++. ..+++..+...++..+++.+.|
T Consensus 257 l~~g~~v~i~~pd~~~r----~~il~~~~~~~~~~l~~e~l~~ 295 (405)
T TIGR00362 257 FEWGLVVDIEPPDLETR----LAILQKKAEEEGLELPDEVLEF 295 (405)
T ss_pred ccCCeEEEeCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 85 699999999999 9999999999999888877665
No 160
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2e-13 Score=118.40 Aligned_cols=160 Identities=22% Similarity=0.177 Sum_probs=110.8
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
.-.|.++.|.+.+...+...+.. .....+||+||||||||++|+++|.+. ...++.+..++
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~ 311 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSE 311 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHH
Confidence 35677877877777666555421 233469999999999999999999987 55777777765
Q ss_pred CcchH--HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhc--CCceEE
Q 025762 124 DRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--SKVTRF 188 (248)
Q Consensus 124 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~--~~~~~i 188 (248)
..+.. .....+......... ....|+|+||+|.+- ....+.|+..++.. .....+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~----------~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARK----------LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred HhccccchHHHHHHHHHHHHHc----------CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 43322 222222222211111 123699999999872 25677788888633 344557
Q ss_pred EEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 189 FFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
|.+||.+..++ +++++ |+. .+.+++|+.++. .++++..+.....
T Consensus 382 i~aTN~p~~ld-~a~lR~gRfd~~i~v~~pd~~~r----~~i~~~~~~~~~~ 428 (494)
T COG0464 382 IAATNRPDDLD-PALLRPGRFDRLIYVPLPDLEER----LEIFKIHLRDKKP 428 (494)
T ss_pred EecCCCccccC-HhhcccCccceEeecCCCCHHHH----HHHHHHHhcccCC
Confidence 88889999999 99999 988 699999999999 8888777764443
No 161
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.2e-14 Score=122.57 Aligned_cols=156 Identities=23% Similarity=0.152 Sum_probs=112.2
Q ss_pred CccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
-.|.++.|.+++++.|.+.+.- .-++.+||+||||||||.||+|+|.++ ..+++.+..++..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSGSEFv 381 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSGSEFV 381 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeechHHHH
Confidence 4688999999999887766632 124469999999999999999999999 7778877776642
Q ss_pred c------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhhcC-
Q 025762 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE---------------DAQNALRRTMETYS- 183 (248)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~---------------~~~~~L~~~l~~~~- 183 (248)
. ...++++...... ...+++++||+|.+.. ...|.|+--|+...
T Consensus 382 E~~~g~~asrvr~lf~~ar~--------------~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARK--------------NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred HHhcccchHHHHHHHHHhhc--------------cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 1 2223333332211 1126999999997731 23455665666543
Q ss_pred -CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 184 -KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 184 -~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
....++.+||.++-++ +++++ |++ .+.+..|+.... .++++.++....+.
T Consensus 448 ~~~vi~~a~tnr~d~ld-~allrpGRfdr~i~i~~p~~~~r----~~i~~~h~~~~~~~ 501 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILD-PALLRPGRFDRQIQIDLPDVKGR----ASILKVHLRKKKLD 501 (774)
T ss_pred CCcEEEEeccCCccccC-HHhcCCCccccceeccCCchhhh----HHHHHHHhhccCCC
Confidence 3345677789999998 99988 777 599999999999 88888888777765
No 162
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.54 E-value=1.5e-13 Score=124.25 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=106.9
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
...|+++.|.+.+++.+.+.+.. ..+.+++|+||||||||++++++++.+ ...++.+++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~ 247 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPE 247 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHH
Confidence 35788999999999888777632 234579999999999999999999998 34556665543
Q ss_pred Ccc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcCCc-
Q 025762 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSKV- 185 (248)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~~~- 185 (248)
... ...++..+.... . ....+|+|||+|.+. ...++.|+.+++.....
T Consensus 248 i~~~~~g~~~~~l~~lf~~a~----~----------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 248 IMSKYYGESEERLREIFKEAE----E----------NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred HhcccccHHHHHHHHHHHHHH----h----------cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 211 111222222211 1 113599999998873 34667788888765443
Q ss_pred -eEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcC
Q 025762 186 -TRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 186 -~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (248)
..+|.+||.+..++ +++++ |+. .+.+..|+.++. ..+++.......
T Consensus 314 ~vivI~atn~~~~ld-~al~r~gRfd~~i~i~~P~~~~R----~~Il~~~~~~~~ 363 (733)
T TIGR01243 314 RVIVIGATNRPDALD-PALRRPGRFDREIVIRVPDKRAR----KEILKVHTRNMP 363 (733)
T ss_pred CEEEEeecCChhhcC-HHHhCchhccEEEEeCCcCHHHH----HHHHHHHhcCCC
Confidence 34566789888898 99887 665 688999998888 777775554433
No 163
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.5e-13 Score=105.21 Aligned_cols=157 Identities=23% Similarity=0.266 Sum_probs=102.3
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
....+++-|-+.+++.|.+++-- ..+..++++||||||||.+|+++|.+.... +..+..+.
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT------FLKLAgPQ 240 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT------FLKLAGPQ 240 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch------HHHhcchH
Confidence 34677888888888888777632 234469999999999999999999987322 22222222
Q ss_pred C------cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHH---hhcC
Q 025762 124 D------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM---ETYS 183 (248)
Q Consensus 124 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l---~~~~ 183 (248)
. .+...+++.+.. +. .....++||||+|.+. .+++..+++++ +.+.
T Consensus 241 LVQMfIGdGAkLVRDAFaL-AK-------------EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFAL-AK-------------EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred HHhhhhcchHHHHHHHHHH-hh-------------ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 1 111222222111 11 1123699999999773 34555555555 4444
Q ss_pred --CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 184 --KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 184 --~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
....+|.+||..+-++ |+|++ |.. .|.|+-|+.+.. ..+++-...+-++.
T Consensus 307 s~~~vKviAATNRvDiLD-PALlRSGRLDRKIEfP~Pne~aR----arIlQIHsRKMnv~ 361 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILD-PALLRSGRLDRKIEFPHPNEEAR----ARILQIHSRKMNVS 361 (424)
T ss_pred CccceEEEeecccccccC-HHHhhcccccccccCCCCChHHH----HHHHHHhhhhcCCC
Confidence 3456889999999998 98877 454 599999998888 77777666665543
No 164
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.54 E-value=4.9e-14 Score=120.62 Aligned_cols=173 Identities=9% Similarity=0.064 Sum_probs=108.5
Q ss_pred cccccc-cc--HHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH
Q 025762 59 QVKDVA-HQ--EEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 59 ~~~~~~-g~--~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
.|++++ |. ..+......+.... ....++|+||+|+|||||++++++.+.... ....++.+++.+.... +...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~~~~--~~~~ 196 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKFTND--FVNA 196 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHH--HHHH
Confidence 566654 43 33444444444332 224599999999999999999999984321 1234445544432111 1111
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhcCCc-eEEEEEeCCCc-c---cChHHHHhh
Q 025762 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKV-TRFFFICNYIS-R---CTFSALFSF 206 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--~~~~~L~~~l~~~~~~-~~ii~~~n~~~-~---~~~~~l~~r 206 (248)
+......... ......++|+|||++.+.. ..+..|+.+++..... ..+|+++|.+. . +. +.+.||
T Consensus 197 ~~~~~~~~~~-------~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~-~~l~SR 268 (450)
T PRK00149 197 LRNNTMEEFK-------EKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLE-ERLRSR 268 (450)
T ss_pred HHcCcHHHHH-------HHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHHHhH
Confidence 1000000000 0001246999999998853 3567788887765543 34777776532 2 55 889999
Q ss_pred hh---eeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 207 LL---FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 207 ~~---~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+. .+.|.+|+.++. ..+++..+...++..+++.+.|
T Consensus 269 l~~gl~v~i~~pd~~~r----~~il~~~~~~~~~~l~~e~l~~ 307 (450)
T PRK00149 269 FEWGLTVDIEPPDLETR----IAILKKKAEEEGIDLPDEVLEF 307 (450)
T ss_pred hcCCeeEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 84 799999999999 9999999999898888877765
No 165
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.53 E-value=1.1e-14 Score=100.55 Aligned_cols=111 Identities=23% Similarity=0.173 Sum_probs=60.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC-CCcchHHHHHHHHHhHhhh--hcCCCCCCCCCCCCceEEE
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vli 160 (248)
|++|.|+||+|||++|+++|+.+ +..+..+... +.... ++........ .......+... ..+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~------~~~f~RIq~tpdllPs----Di~G~~v~~~~~~~f~~~~GPif---~~ill 67 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL------GLSFKRIQFTPDLLPS----DILGFPVYDQETGEFEFRPGPIF---TNILL 67 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT------T--EEEEE--TT--HH----HHHEEEEEETTTTEEEEEE-TT----SSEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc------CCceeEEEecCCCCcc----cceeeeeeccCCCeeEeecChhh---hceee
Confidence 68999999999999999999998 3344444443 22211 1111100000 00001122222 25999
Q ss_pred EeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-----cccChHHHHhhhh
Q 025762 161 LDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-----SRCTFSALFSFLL 208 (248)
Q Consensus 161 lDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-----~~~~~~~l~~r~~ 208 (248)
+||+++.++..|++|+++|++++ ....+|.+.|+. +.++ +++.+||.
T Consensus 68 ~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lp-ea~~DRF~ 130 (131)
T PF07726_consen 68 ADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLP-EAQLDRFM 130 (131)
T ss_dssp EETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S-------HHHHTTSS
T ss_pred ecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCC-HHHhcccc
Confidence 99999999999999999999875 223344455653 4677 89999874
No 166
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-13 Score=110.71 Aligned_cols=162 Identities=21% Similarity=0.159 Sum_probs=106.2
Q ss_pred CccccccccHHHHHHHHHHHHcC--------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETA--------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~--------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
-+|.++-|-+.+++.+.+.+.-. .+.+|+++||||||||.+|+++++++ ...++.+..+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~ 162 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSN 162 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccc
Confidence 36888889999998887776321 34469999999999999999999999 44555566655
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-------HHHHHH----HHHHHhhc----CCceEE
Q 025762 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-------EDAQNA----LRRTMETY----SKVTRF 188 (248)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-------~~~~~~----L~~~l~~~----~~~~~i 188 (248)
........ ...+......-.. .-...+++|||+|.+- .+.... ++..=+.. .....+
T Consensus 163 lt~KWfgE--~eKlv~AvFslAs------Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV 234 (386)
T KOG0737|consen 163 LTSKWFGE--AQKLVKAVFSLAS------KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLV 234 (386)
T ss_pred cchhhHHH--HHHHHHHHHhhhh------hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEE
Confidence 54422111 1111111111000 0123599999999773 122111 21111111 123335
Q ss_pred EEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 189 FFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
+-+||.++.++ +++.+|+. .+.+.-|+.++. .++|+-+++.+.++
T Consensus 235 lgATNRP~DlD-eAiiRR~p~rf~V~lP~~~qR----~kILkviLk~e~~e 280 (386)
T KOG0737|consen 235 LGATNRPFDLD-EAIIRRLPRRFHVGLPDAEQR----RKILKVILKKEKLE 280 (386)
T ss_pred EeCCCCCccHH-HHHHHhCcceeeeCCCchhhH----HHHHHHHhcccccC
Confidence 56679999999 99999976 689999999999 99999999999886
No 167
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.2e-14 Score=108.87 Aligned_cols=145 Identities=21% Similarity=0.274 Sum_probs=99.3
Q ss_pred cCCCccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
.....+.++-|-+.+++.|.+.+.-. .+..|+++|+||||||.||+++|++... .++.+..
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA------TFlRvvG 252 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA------TFLRVVG 252 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch------hhhhhhh
Confidence 33456788888999999999887542 3446999999999999999999998733 3333333
Q ss_pred CCC------cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhc--
Q 025762 122 SDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-- 182 (248)
Q Consensus 122 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~-- 182 (248)
++. .+...+++++....... ..++||||||.+. .+.+..++++++..
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~a--------------pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldG 318 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHA--------------PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 318 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcC--------------CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccC
Confidence 322 22333444444332222 2499999999873 34555566666532
Q ss_pred ---CCceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCcccc
Q 025762 183 ---SKVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQIS 220 (248)
Q Consensus 183 ---~~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~ 220 (248)
.+...+|++||....++ |+|.+ |.. .|.|+-|+....
T Consensus 319 FdsrgDvKvimATnrie~LD-PaLiRPGrIDrKIef~~pDe~Tk 361 (440)
T KOG0726|consen 319 FDSRGDVKVIMATNRIETLD-PALIRPGRIDRKIEFPLPDEKTK 361 (440)
T ss_pred ccccCCeEEEEecccccccC-HhhcCCCccccccccCCCchhhh
Confidence 24567999999999999 99987 555 488887776555
No 168
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.7e-13 Score=109.07 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=105.6
Q ss_pred ccccccccHHHHHHHHHHHHc--------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH--
Q 025762 59 QVKDVAHQEEVVRVLTNTLET--------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN-- 128 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-- 128 (248)
.+++++-++...++|...... .-..||+|+||||||||..|+.+++.. +.++..+..+|.....
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S------GlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS------GLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc------CCceehhcCCCccccchH
Confidence 477888888777777665432 234579999999999999999999986 4455556666653221
Q ss_pred HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHH---hhcCCceEEEEEeCCCc
Q 025762 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTM---ETYSKVTRFFFICNYIS 196 (248)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l---------~~~~~~~L~~~l---~~~~~~~~ii~~~n~~~ 196 (248)
.+..+-..+. |.. ...++=+|||||+|-+ +..+..+|.-++ .+.....+++++||.+.
T Consensus 427 aVTkiH~lFD-----Wak-----kS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 427 AVTKIHKLFD-----WAK-----KSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHHHHHHHHH-----HHh-----hcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 1211111111 110 1112347899999854 555555554444 33445566889999999
Q ss_pred ccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhc
Q 025762 197 RCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 197 ~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
.++ -++-+|+. ++.|+-|-.+|.++.+..++..++..-
T Consensus 497 dlD-sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~ 535 (630)
T KOG0742|consen 497 DLD-SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKP 535 (630)
T ss_pred chh-HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCc
Confidence 999 99999988 799999999999555555555554433
No 169
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=117.45 Aligned_cols=175 Identities=11% Similarity=0.080 Sum_probs=106.2
Q ss_pred Ccccccc-ccHH--HHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH
Q 025762 58 KQVKDVA-HQEE--VVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 58 ~~~~~~~-g~~~--~~~~l~~~l~~~-~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
..|+.++ |... +.....+..... ...+++|+||+|+|||||++++++.+.... ....+..+++.+.. ...
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f~-----~~~ 175 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFL-----NDL 175 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHH-----HHH
Confidence 3677666 5432 223333333322 234699999999999999999999873221 12344444443321 111
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCc-eEEEEEeCC-Cc---ccChHHHHhh
Q 025762 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKV-TRFFFICNY-IS---RCTFSALFSF 206 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~-~~ii~~~n~-~~---~~~~~~l~~r 206 (248)
...+...... .. .. ......++|+|||++.+. ...+..|+.+++..... ..+|++++. +. .+. +.+.||
T Consensus 176 ~~~~~~~~~~-~f-~~-~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~-~rL~SR 251 (440)
T PRK14088 176 VDSMKEGKLN-EF-RE-KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ-DRLVSR 251 (440)
T ss_pred HHHHhcccHH-HH-HH-HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH-HHHhhH
Confidence 1111000000 00 00 000124699999999874 33566777777765543 346777753 22 344 788999
Q ss_pred hh---eeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 207 LL---FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 207 ~~---~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
+. .+.+.+|+.+.. .++++..+..+++..+++.+.|
T Consensus 252 ~~~gl~v~i~~pd~e~r----~~IL~~~~~~~~~~l~~ev~~~ 290 (440)
T PRK14088 252 FQMGLVAKLEPPDEETR----KKIARKMLEIEHGELPEEVLNF 290 (440)
T ss_pred HhcCceEeeCCCCHHHH----HHHHHHHHHhcCCCCCHHHHHH
Confidence 87 789999999999 9999999999998888777655
No 170
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.50 E-value=1.2e-13 Score=118.28 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=102.2
Q ss_pred CccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-------------
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD------------- 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~------------- 124 (248)
.+|.++.|+..+++.+...+. .+.+++|.||||+|||++++.++..+.... ....++......
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~--~~~~le~~~i~s~~g~~~~~~~~~~ 264 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLT--NEEAIETARIWSLVGKLIDRKQIKQ 264 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCC--CcEEEeccccccchhhhcccccccc
Confidence 378999999999888876654 445999999999999999999998762211 111121111100
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEE
Q 025762 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFI 191 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~ 191 (248)
........................+....+++++|||||++.+++..++.|++.|+... ...++|.+
T Consensus 265 ~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 265 RPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 00000000000000011112245566778888999999999999999999999998753 34568888
Q ss_pred eCCC-----------------------cccChHHHHhhhh-eeeeccCCccc
Q 025762 192 CNYI-----------------------SRCTFSALFSFLL-FFMFFSLLDQI 219 (248)
Q Consensus 192 ~n~~-----------------------~~~~~~~l~~r~~-~i~~~~~~~~~ 219 (248)
+|+- .++. .+|++|+. .+.+.+++.++
T Consensus 345 ~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is-~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 345 MNPCPCGHYGGKNTHCRCSPQQISRYWNKLS-GPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cCCcccCcCCCCcccccCCHHHHHHHhhhcc-HhHHhhCCEEEEEcCCCHHH
Confidence 8752 1477 88999998 47777765543
No 171
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.50 E-value=3.3e-13 Score=119.73 Aligned_cols=156 Identities=22% Similarity=0.150 Sum_probs=106.3
Q ss_pred CCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
...|.++.|.+..+..+...+.. ....+++|+||||||||+++++++..+ ..+++.+++++.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~------~~~f~~is~~~~ 221 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDF 221 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCEEEEehHHh
Confidence 34677888888777666554421 124469999999999999999999998 445566655442
Q ss_pred c------chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhcCC
Q 025762 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYSK 184 (248)
Q Consensus 125 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------------~~~~~L~~~l~~~~~ 184 (248)
. ....++..+..... ....|+||||+|.+.. ...+.|+..|+....
T Consensus 222 ~~~~~g~~~~~~~~~f~~a~~--------------~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 222 VEMFVGVGASRVRDMFEQAKK--------------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred HHhhhcccHHHHHHHHHHHHh--------------cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 1 11222222222111 1236999999998732 245566666765543
Q ss_pred --ceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 185 --VTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 185 --~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
...+|.+||.+..++ +++.+ ||. .+.+..|+.++. ..+++.++....+
T Consensus 288 ~~~vivIaaTN~p~~lD-~Al~RpgRfdr~i~v~~Pd~~~R----~~Il~~~~~~~~l 340 (644)
T PRK10733 288 NEGIIVIAATNRPDVLD-PALLRPGRFDRQVVVGLPDVRGR----EQILKVHMRRVPL 340 (644)
T ss_pred CCCeeEEEecCChhhcC-HHHhCCcccceEEEcCCCCHHHH----HHHHHHHhhcCCC
Confidence 345777899999999 99986 786 689999999999 8888877766554
No 172
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.9e-13 Score=107.53 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=103.9
Q ss_pred ccccccccHHHHHHHHHHHHc-----CC---------CCeEEEEcCCCCcHHHHHHHHHHHhc---CCCccccceEEecc
Q 025762 59 QVKDVAHQEEVVRVLTNTLET-----AN---------CPHMLFYGPPGTGKTTTALAIAHQLF---GPELYKSRVLELNA 121 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-----~~---------~~~ill~Gp~G~GKT~la~~la~~~~---~~~~~~~~~~~~~~ 121 (248)
-|+.++.....++++...... .. .+-++++||||||||+|.+++|+.+. ...++...++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 355666566666666554432 11 11389999999999999999999984 22344556777777
Q ss_pred CCCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC---------------HHHHHHHHHHHh
Q 025762 122 SDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------------EDAQNALRRTME 180 (248)
Q Consensus 122 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~---------------~~~~~~L~~~l~ 180 (248)
-..-+ ...+...++.........+ ..-+++|||+..+. -.+.|+|+..++
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~---------~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRG---------NLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCC---------cEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 54322 1223333333333222211 12367899998772 236788999998
Q ss_pred hcC--CceEEEEEeCCCcccChHHHHhhhhe-eeeccCCccccchHHHHHHHHHH
Q 025762 181 TYS--KVTRFFFICNYISRCTFSALFSFLLF-FMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 181 ~~~--~~~~ii~~~n~~~~~~~~~l~~r~~~-i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
... ++..+..|+|-...++ .++.+|.++ +.+.||+.+-+.+++...+...+
T Consensus 291 rlK~~~NvliL~TSNl~~siD-~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 291 RLKRYPNVLILATSNLTDSID-VAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred HhccCCCEEEEeccchHHHHH-HHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 655 4444555668888999 999999984 77788888877555555554443
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.49 E-value=6.5e-13 Score=117.75 Aligned_cols=153 Identities=14% Similarity=0.038 Sum_probs=100.4
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc-----------CCCcc---------------
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-----------GPELY--------------- 112 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~-----------~~~~~--------------- 112 (248)
.|..++||+.++..+..+.......+|+|.|++|||||++|++++..+- |....
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 4678999999999988777776666899999999999999999999871 11100
Q ss_pred ---ccceEEeccCCCcchHHHHHHHHHh--Hhh--hhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC--
Q 025762 113 ---KSRVLELNASDDRGINVVRTKIKTF--AAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-- 183 (248)
Q Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-- 183 (248)
..+++.+.+.. .. ..++... ... ........+....++.++|+|||++.+++..++.|+.+|+...
T Consensus 82 ~~~~~pfv~~p~~~--t~---~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~ 156 (633)
T TIGR02442 82 EQRPVPFVNLPLGA--TE---DRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNR 156 (633)
T ss_pred ccCCCCeeeCCCCC--cH---HHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEE
Confidence 11222222211 00 0111110 000 0111123455556778999999999999999999999998653
Q ss_pred -----------CceEEEEEeCCC-cccChHHHHhhhh-eeeeccCCc
Q 025762 184 -----------KVTRFFFICNYI-SRCTFSALFSFLL-FFMFFSLLD 217 (248)
Q Consensus 184 -----------~~~~ii~~~n~~-~~~~~~~l~~r~~-~i~~~~~~~ 217 (248)
....+|.++|+. ..+. ++|++|+. .+.+.++..
T Consensus 157 v~r~g~~~~~~~~~~lIat~np~eg~l~-~~L~dR~~l~i~v~~~~~ 202 (633)
T TIGR02442 157 VEREGLSVSHPARFVLIGTMNPEEGDLR-PQLLDRFGLCVDVAAPRD 202 (633)
T ss_pred EEECCceeeecCCeEEEEecCCCCCCCC-HHHHhhcceEEEccCCCc
Confidence 234566666753 4577 99999997 366665543
No 174
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.6e-13 Score=104.38 Aligned_cols=142 Identities=23% Similarity=0.194 Sum_probs=94.1
Q ss_pred CccccccccHHHHHHHHHHHHc---------CC---CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET---------AN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~---------~~---~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
-.|+++.|.+.++++|.+++-- +. -..++|+||||||||+||+++|.++ +..++.+..++..
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLv 203 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV 203 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHH
Confidence 4788999999999999887632 22 1259999999999999999999998 5567777777764
Q ss_pred chHH--HHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcC---CceEEE
Q 025762 126 GINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS---KVTRFF 189 (248)
Q Consensus 126 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~---~~~~ii 189 (248)
+.-. -..+..++....-. .+..+|||||+|.+. ...-..|+-.|+.-. ....++
T Consensus 204 SKWmGESEkLVknLFemARe----------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARE----------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred HHHhccHHHHHHHHHHHHHh----------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 4321 22222322221111 123699999999872 223344555554322 233456
Q ss_pred EEeCCCcccChHHHHhhhh-eeeeccCC
Q 025762 190 FICNYISRCTFSALFSFLL-FFMFFSLL 216 (248)
Q Consensus 190 ~~~n~~~~~~~~~l~~r~~-~i~~~~~~ 216 (248)
-+||-+..++ .++++||. .|.++-|.
T Consensus 274 gATNiPw~LD-sAIRRRFekRIYIPLPe 300 (439)
T KOG0739|consen 274 GATNIPWVLD-SAIRRRFEKRIYIPLPE 300 (439)
T ss_pred ecCCCchhHH-HHHHHHhhcceeccCCc
Confidence 6678888888 99999998 45554443
No 175
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.48 E-value=2.9e-13 Score=111.37 Aligned_cols=179 Identities=15% Similarity=0.077 Sum_probs=119.3
Q ss_pred CccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
..+.+++|.....+++.+.+.. ..+.+|+|+|++||||+.+|+.+.... ......+++.++|......-...+++.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s--~r~~~~PFI~~NCa~~~en~~~~eLFG 152 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALS--ARRAEAPFIAFNCAAYSENLQEAELFG 152 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhh--hcccCCCEEEEEHHHhCcCHHHHHHhc
Confidence 4677889987777666655544 355689999999999999999999433 222577899999988755444444333
Q ss_pred HhHhhhhc-CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEEeCC--CcccChH
Q 025762 136 TFAAVAVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNY--ISRCTFS 201 (248)
Q Consensus 136 ~~~~~~~~-~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~-----------~~~~~ii~~~n~--~~~~~~~ 201 (248)
-......+ .....+.+..++.+.||+||++.+|+..|..|+.+++++ +..+++|++|+. ...+. .
T Consensus 153 ~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~-~ 231 (403)
T COG1221 153 HEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL-A 231 (403)
T ss_pred cccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHH-h
Confidence 22111111 223456677888999999999999999999999999984 345668888863 34444 5
Q ss_pred --HHHhhhh--eeeeccCCcc--ccchHHHHHHHHHHhhcCccc
Q 025762 202 --ALFSFLL--FFMFFSLLDQ--ISFDKEYIRIIYASTLKFLEG 239 (248)
Q Consensus 202 --~l~~r~~--~i~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 239 (248)
.+.+|+. .|+++|+.+. |+...+.-.+...+.+.+.+.
T Consensus 232 g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~ 275 (403)
T COG1221 232 GADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPL 275 (403)
T ss_pred hcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCC
Confidence 6777544 5777777664 332222333344455555443
No 176
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.48 E-value=1.2e-13 Score=102.51 Aligned_cols=101 Identities=24% Similarity=0.304 Sum_probs=69.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc----hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceE
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 158 (248)
.+++|.||+|||||.+|++++..+.. ....+++.++++.... ...+.......... +.....+|
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~--~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~----------v~~~~~gV 71 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV--GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGY----------VGAEEGGV 71 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCH----------HHHHHHTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc--CCccchHHHhhhcccccchHHhhhhhhhhcccce----------eeccchhh
Confidence 37999999999999999999999941 1134777788877655 22222222211000 00111349
Q ss_pred EEEeCCCCCCH-----------HHHHHHHHHHhhcC-----------CceEEEEEeCCC
Q 025762 159 IILDEADSMTE-----------DAQNALRRTMETYS-----------KVTRFFFICNYI 195 (248)
Q Consensus 159 lilDEi~~l~~-----------~~~~~L~~~l~~~~-----------~~~~ii~~~n~~ 195 (248)
+++||+|++.+ .+++.|+++++... .++.||+|+|-.
T Consensus 72 VllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 72 VLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp EEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 99999999999 99999999998653 445688888854
No 177
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.47 E-value=1.3e-12 Score=107.04 Aligned_cols=168 Identities=16% Similarity=0.099 Sum_probs=106.7
Q ss_pred cccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhh
Q 025762 64 AHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (248)
+|+...++.+.+.+.. ....+|+|+|++||||+++|+++...... ...+++.++|..... ..+...+.......
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r---~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR---WQGPLVKLNCAALSE-NLLDSELFGHEAGA 77 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc---cCCCeEEEeCCCCCh-HHHHHHHhcccccc
Confidence 5666656555444433 23447999999999999999999876522 245888899986532 22222111111000
Q ss_pred h--cCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------cccChH
Q 025762 142 V--GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRCTFS 201 (248)
Q Consensus 142 ~--~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~~~~~ 201 (248)
. ......+....+..+.|||||++.++...|..|+.+++... ..+++|++|+.. ..+. +
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr-~ 156 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFR-A 156 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchH-H
Confidence 0 01113344556778999999999999999999999998753 345788888742 3455 7
Q ss_pred HHHhhhh--eeeeccCCc--cccchHHHHHHHHHHhhcC
Q 025762 202 ALFSFLL--FFMFFSLLD--QISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 202 ~l~~r~~--~i~~~~~~~--~~~~~~~~~~l~~~~~~~~ 236 (248)
.|..|+. .|.++|+.+ +++...+...+...+.+.+
T Consensus 157 dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~ 195 (329)
T TIGR02974 157 DLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELG 195 (329)
T ss_pred HHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhC
Confidence 8888875 577888874 5663333333444444444
No 178
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.47 E-value=1.9e-12 Score=113.20 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=112.6
Q ss_pred CCCccccccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
+...++.++|+...++.+.+.+... ...+|+|+|++||||+++|+++.+.... ...+++.++|..... ..+...
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r---~~~pfv~i~c~~~~~-~~~~~~ 266 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR---AKRPFVKVNCAALSE-TLLESE 266 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeecCCCCH-HHHHHH
Confidence 3356789999988888777666433 4457999999999999999999987532 245788899987633 222221
Q ss_pred HHHhHhhhh-c-CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-----
Q 025762 134 IKTFAAVAV-G-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI----- 195 (248)
Q Consensus 134 ~~~~~~~~~-~-~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~----- 195 (248)
+........ + .....+....++.++|+|||++.++...|..|+++++... ...++|++|+..
T Consensus 267 lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~ 346 (534)
T TIGR01817 267 LFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAV 346 (534)
T ss_pred HcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHH
Confidence 111000000 0 0112333455678999999999999999999999998643 135788888642
Q ss_pred --cccChHHHHhhhh--eeeeccCC--ccccchHHHHHHHHHH
Q 025762 196 --SRCTFSALFSFLL--FFMFFSLL--DQISFDKEYIRIIYAS 232 (248)
Q Consensus 196 --~~~~~~~l~~r~~--~i~~~~~~--~~~~~~~~~~~l~~~~ 232 (248)
..+. +.|..|+. .+.++|+. .+++...+...+...+
T Consensus 347 ~~~~f~-~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~ 388 (534)
T TIGR01817 347 AKGEFR-ADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFN 388 (534)
T ss_pred HcCCCC-HHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHH
Confidence 3455 78888876 46777777 3667333333333333
No 179
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.8e-12 Score=111.39 Aligned_cols=152 Identities=21% Similarity=0.169 Sum_probs=104.4
Q ss_pred CccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
-.|+++.|-.++++.+.+.+... ...+++++||||||||.||.+++... ...++.+.++..
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~~~fisvKGPEl 737 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------NLRFISVKGPEL 737 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCHHH
Confidence 36788888888888777766432 23469999999999999999999987 566777776654
Q ss_pred cc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcCC--c
Q 025762 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSK--V 185 (248)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~~--~ 185 (248)
.+ ...++.++.... .++.++||+||+|.+. ..+.|.|+.-|+.-.+ .
T Consensus 738 L~KyIGaSEq~vR~lF~rA~--------------~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQ--------------SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred HHHHhcccHHHHHHHHHHhh--------------ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 22 222333333321 2345799999999883 4578889888875443 3
Q ss_pred eEEEEEeCCCcccChHHHHh--hhhe-eeeccCCccccchHHHHHHHHHHhh
Q 025762 186 TRFFFICNYISRCTFSALFS--FLLF-FMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~--r~~~-i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
.-++.+|..++.++ |+|++ |++. +..+.|++.+. .++++.+...
T Consensus 804 V~i~aaTsRpdliD-pALLRpGRlD~~v~C~~P~~~eR----l~il~~ls~s 850 (952)
T KOG0735|consen 804 VYILAATSRPDLID-PALLRPGRLDKLVYCPLPDEPER----LEILQVLSNS 850 (952)
T ss_pred EEEEEecCCccccC-HhhcCCCccceeeeCCCCCcHHH----HHHHHHHhhc
Confidence 33455556778888 99987 6775 55555666677 6776655443
No 180
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.46 E-value=7.7e-13 Score=114.58 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=100.7
Q ss_pred cccccccHHHHHHHHHHHHcCCC------------CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch
Q 025762 60 VKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248)
...+.|++.++..+.-.+..+.. .|++|+|+||||||.+|+++++..... .+.........+.
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l 276 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGL 276 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCc
Confidence 34677999988888777766421 279999999999999999999986211 1111000110000
Q ss_pred --HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEEe
Q 025762 128 --NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFIC 192 (248)
Q Consensus 128 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~ 192 (248)
...++. .........+....++.++++|||++.+++..+..|+++|+... ..+++|.++
T Consensus 277 ~~~~~~~~------~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~ 350 (509)
T smart00350 277 TAAVTRDP------ETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAA 350 (509)
T ss_pred cccceEcc------CcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEe
Confidence 000000 00111123455556778999999999999999999999998643 345688888
Q ss_pred CCCc-------------ccChHHHHhhhhe--eeeccCCccccchHHHHHHHHHH
Q 025762 193 NYIS-------------RCTFSALFSFLLF--FMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 193 n~~~-------------~~~~~~l~~r~~~--i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
|+.. .++ +++++||.. +...+++.+.- ..++.++.
T Consensus 351 NP~~g~y~~~~~~~~n~~l~-~~lLsRFdLi~~~~d~~~~~~d----~~i~~~i~ 400 (509)
T smart00350 351 NPIGGRYDPKLTPEENIDLP-APILSRFDLLFVVLDEVDEERD----RELAKHVV 400 (509)
T ss_pred CCCCcccCCCcChhhccCCC-hHHhCceeeEEEecCCCChHHH----HHHHHHHH
Confidence 8642 577 999999964 44455555555 45555544
No 181
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.46 E-value=1.7e-12 Score=101.02 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=74.3
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC-------------CCcccChHHHHhhhheeeeccCCccccch
Q 025762 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN-------------YISRCTFSALFSFLLFFMFFSLLDQISFD 222 (248)
Q Consensus 156 ~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n-------------~~~~~~~~~l~~r~~~i~~~~~~~~~~~~ 222 (248)
.+||||||+|.++-+....|.+.++..-.+ .+||++| .++.++ +.+++|..++.-.+++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~iaP-ivifAsNrG~~~irGt~d~~sPhGip-~dllDRl~Iirt~~y~~~e~-- 372 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIAP-IVIFASNRGMCTIRGTEDILSPHGIP-PDLLDRLLIIRTLPYDEEEI-- 372 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCCc-eEEEecCCcceeecCCcCCCCCCCCC-HHHhhheeEEeeccCCHHHH--
Confidence 389999999999999999999999885544 4788887 367788 99999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccCceee
Q 025762 223 KEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
+.+++..++.|+++.++.+|.
T Consensus 373 --r~Ii~~Ra~~E~l~~~e~a~~ 393 (456)
T KOG1942|consen 373 --RQIIKIRAQVEGLQVEEEALD 393 (456)
T ss_pred --HHHHHHHHhhhcceecHHHHH
Confidence 999999999999998887764
No 182
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=2.6e-12 Score=97.98 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=107.4
Q ss_pred HHHHHHHcCCCC-eEEEEcCCC-CcHHHHHHHHHHHhcCCC---ccccceEEeccC-------CCcchHHHHHHHHHhHh
Q 025762 72 VLTNTLETANCP-HMLFYGPPG-TGKTTTALAIAHQLFGPE---LYKSRVLELNAS-------DDRGINVVRTKIKTFAA 139 (248)
Q Consensus 72 ~l~~~l~~~~~~-~ill~Gp~G-~GKT~la~~la~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 139 (248)
.+.+.+...+.. ..+|.|..+ +||..++..++..+.|.+ ....++..+.+. .....+.+++....+..
T Consensus 4 ~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~ 83 (263)
T PRK06581 4 RLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSK 83 (263)
T ss_pred HHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhh
Confidence 455555555433 489999998 999999999999986643 223455555443 23566677776665544
Q ss_pred hhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccc
Q 025762 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQI 219 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~ 219 (248)
.... ++++|++||+++.|.....++|++.+|+++..+.++++|+.+..++ ++++|||..+.|..++...
T Consensus 84 ~p~~----------g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LL-pTIrSRCq~i~~~~p~~~~ 152 (263)
T PRK06581 84 TSAI----------SGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASII-STIRSRCFKINVRSSILHA 152 (263)
T ss_pred Cccc----------CCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCc-hhHhhceEEEeCCCCCHHH
Confidence 3332 3468999999999999999999999999999999999999999999 9999999999999888855
Q ss_pred c
Q 025762 220 S 220 (248)
Q Consensus 220 ~ 220 (248)
.
T Consensus 153 ~ 153 (263)
T PRK06581 153 Y 153 (263)
T ss_pred H
Confidence 5
No 183
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.7e-14 Score=116.72 Aligned_cols=122 Identities=30% Similarity=0.386 Sum_probs=81.6
Q ss_pred CccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc-----CC---------
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-----SD--------- 123 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~-----~~--------- 123 (248)
.+|.+++||+.+++.+.-+.. .++|++++||||||||.+|+.+...+ +.......+++.. ++
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lL--Ppls~~E~lE~s~I~s~~g~~~~~~~~~~ 251 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLL--PPLSIPEALEVSAIHSLAGDLHEGCPLKI 251 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccC--CCCChHHHHHHHHHhhhcccccccCccce
Confidence 389999999999999985554 45599999999999999999988776 1111111111110 00
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC
Q 025762 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (248)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~ 183 (248)
.+....-............+..+..+..+.++++||||||+..+.....+.|...||+..
T Consensus 252 ~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~ 311 (490)
T COG0606 252 HRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGK 311 (490)
T ss_pred eCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCc
Confidence 000000001111112222334567888899999999999999999999999999998764
No 184
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.45 E-value=2.1e-12 Score=111.49 Aligned_cols=170 Identities=19% Similarity=0.168 Sum_probs=111.6
Q ss_pred CccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcC-----CCccccceEEeccCCCcchHHH
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFG-----PELYKSRVLELNASDDRGINVV 130 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 130 (248)
..|++++|+...++.+.+.+.. ....+|+|+|++||||+.+|+++.+.+.. +.....+++.++|..... ..+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhH
Confidence 3678899999888877777643 34557999999999999999999987210 122356899999987643 222
Q ss_pred HHHHHHhHhhhhcC---CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-
Q 025762 131 RTKIKTFAAVAVGS---GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI- 195 (248)
Q Consensus 131 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~- 195 (248)
...+.......... ....+....++.+.|||||++.|+...|..|++++++.. -..++|++|+..
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 22221111111111 112344556778999999999999999999999998753 234788888743
Q ss_pred ------cccChHHHHhhhhe--eeeccCCc--cccchHHHHHHHHHHh
Q 025762 196 ------SRCTFSALFSFLLF--FMFFSLLD--QISFDKEYIRIIYAST 233 (248)
Q Consensus 196 ------~~~~~~~l~~r~~~--i~~~~~~~--~~~~~~~~~~l~~~~~ 233 (248)
..+. +.+..|+.. +.++|+.+ +++ ...+...+.
T Consensus 375 ~~~v~~g~Fr-~dL~yrL~~~~I~lPPLReR~eDI----~~L~~~fl~ 417 (538)
T PRK15424 375 EEDVRQGRFR-RDLFYRLSILRLQLPPLRERVADI----LPLAESFLK 417 (538)
T ss_pred HHHHhcccch-HHHHHHhcCCeecCCChhhchhHH----HHHHHHHHH
Confidence 2244 567777664 66666655 345 444444443
No 185
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.45 E-value=7.4e-13 Score=124.52 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=55.2
Q ss_pred ceEEEEeCCCCCCHH-----HHHHHHHHHhhc-----CCceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccch
Q 025762 156 YKIIILDEADSMTED-----AQNALRRTMETY-----SKVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFD 222 (248)
Q Consensus 156 ~~vlilDEi~~l~~~-----~~~~L~~~l~~~-----~~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~ 222 (248)
.+||+|||||.+... ..+.|+..|+.. .....||.+||.++.++ |||++ |+. .|.+..|+..+.
T Consensus 1733 PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LD-PALLRPGRFDR~I~Ir~Pd~p~R-- 1809 (2281)
T CHL00206 1733 PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVD-PALIAPNKLNTCIKIRRLLIPQQ-- 1809 (2281)
T ss_pred CeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCC-HhHcCCCCCCeEEEeCCCCchhH--
Confidence 479999999999643 356777777643 23455788889999999 99998 887 588888887766
Q ss_pred HHHHHHHHHHhhcCcc
Q 025762 223 KEYIRIIYASTLKFLE 238 (248)
Q Consensus 223 ~~~~~l~~~~~~~~~~ 238 (248)
.+++..+....++.
T Consensus 1810 --~kiL~ILl~tkg~~ 1823 (2281)
T CHL00206 1810 --RKHFFTLSYTRGFH 1823 (2281)
T ss_pred --HHHHHHHHhhcCCC
Confidence 55554333333443
No 186
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.44 E-value=7.5e-14 Score=110.06 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=83.8
Q ss_pred CchHHHHhhhcccccCccchhhccCCCcccccc-ccHHHHHHHHHHH-HcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~l~~~l-~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
++.+....++. .+..|......-.+++... ++..+...+.... +-.++.+++|+||||||||+||.++++.+. .
T Consensus 56 ~~~r~~~~~~~---~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~ 131 (254)
T COG1484 56 REARKIERRLR---SASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K 131 (254)
T ss_pred HHHHHHHHHHH---HhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H
Confidence 33444444444 4555555443333443322 2344444444333 333667999999999999999999999995 3
Q ss_pred CccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCceE
Q 025762 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTR 187 (248)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~~~ 187 (248)
.+. .+..+..++. +.++...... ............+.+||||||++..+ ....+.+++++..+.....
T Consensus 132 ~g~--sv~f~~~~el-----~~~Lk~~~~~---~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~ 201 (254)
T COG1484 132 AGI--SVLFITAPDL-----LSKLKAAFDE---GRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRS 201 (254)
T ss_pred cCC--eEEEEEHHHH-----HHHHHHHHhc---CchHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhcc
Confidence 332 3333333321 1111111110 00000000012345799999999864 4567889998888876666
Q ss_pred EEEEeCCC
Q 025762 188 FFFICNYI 195 (248)
Q Consensus 188 ii~~~n~~ 195 (248)
.++|+|.+
T Consensus 202 ~~~tsN~~ 209 (254)
T COG1484 202 LIITSNLS 209 (254)
T ss_pred ceeecCCC
Confidence 69999854
No 187
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-12 Score=108.00 Aligned_cols=172 Identities=21% Similarity=0.242 Sum_probs=106.1
Q ss_pred hhccCCCccccccccHHHHHHHHHH----HHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch
Q 025762 52 VEKYRPKQVKDVAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (248)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~----l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248)
...|-|.. +.+++..+..+... +..+.+.|++++|+||||||++++.+.+++..... ...++.++|......
T Consensus 11 ~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~~~~yINc~~~~t~ 86 (366)
T COG1474 11 LEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NVEVVYINCLELRTP 86 (366)
T ss_pred CCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cCceEEEeeeeCCCH
Confidence 33444444 56777777655544 45667778999999999999999999999943322 223777888766443
Q ss_pred H-HHHHHHHHhHhhhhcCCCC---------CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC---CceEEEEEeCC
Q 025762 128 N-VVRTKIKTFAAVAVGSGQR---------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNY 194 (248)
Q Consensus 128 ~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~---~~~~ii~~~n~ 194 (248)
. .+......+... ...+.. .........-|++|||+|.+.....+.|+.++.... ....+|.++|.
T Consensus 87 ~~i~~~i~~~~~~~-p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 87 YQVLSKILNKLGKV-PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHHcCCC-CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEecc
Confidence 3 333333332211 111100 000113345689999999997664455555554433 33457777776
Q ss_pred C---cccChHHHHhhhh--eeeeccCCccccchHHHHHHHHHHh
Q 025762 195 I---SRCTFSALFSFLL--FFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 195 ~---~~~~~~~l~~r~~--~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
. ..++ +.+.+++. .+.|+|++.+|+ ..++...+.
T Consensus 166 ~~~~~~ld-~rv~s~l~~~~I~F~pY~a~el----~~Il~~R~~ 204 (366)
T COG1474 166 DKFLDYLD-PRVKSSLGPSEIVFPPYTAEEL----YDILRERVE 204 (366)
T ss_pred HHHHHHhh-hhhhhccCcceeeeCCCCHHHH----HHHHHHHHH
Confidence 4 3455 77888765 488999999999 555554433
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.44 E-value=1.4e-12 Score=108.88 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=89.4
Q ss_pred cccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc-cccceEEeccCCCcchHHHHHHHHHhH
Q 025762 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDRGINVVRTKIKTFA 138 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (248)
++++.+.+...+.+...+.... +++|+||||||||++|+.++..+..... .....+.+...- ...+.+....
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsy-----SYeDFI~G~r 246 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSY-----SYEDFIQGYR 246 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccc-----cHHHHhcccC
Confidence 5566777888888888887655 9999999999999999999999854321 111222222111 0111111000
Q ss_pred hhhhcCCCCCCC---------CCCCCceEEEEeCCCCCCHH-HHHHHHHHHhhcC----------------------Cce
Q 025762 139 AVAVGSGQRRGG---------YPCPPYKIIILDEADSMTED-AQNALRRTMETYS----------------------KVT 186 (248)
Q Consensus 139 ~~~~~~~~~~~~---------~~~~~~~vlilDEi~~l~~~-~~~~L~~~l~~~~----------------------~~~ 186 (248)
....+.....+. ....+..+|||||+++.+.+ ....++.+++... .+.
T Consensus 247 P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl 326 (459)
T PRK11331 247 PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENV 326 (459)
T ss_pred CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCe
Confidence 000000000000 00123469999999999855 4677788787421 233
Q ss_pred EEEEEeCCCc----ccChHHHHhhhheeeeccC
Q 025762 187 RFFFICNYIS----RCTFSALFSFLLFFMFFSL 215 (248)
Q Consensus 187 ~ii~~~n~~~----~~~~~~l~~r~~~i~~~~~ 215 (248)
.||.|.|..+ .++ .++++||..+.+.|-
T Consensus 327 ~IIgTMNt~Drs~~~lD-~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 327 YIIGLMNTADRSLAVVD-YALRRRFSFIDIEPG 358 (459)
T ss_pred EEEEecCccccchhhcc-HHHHhhhheEEecCC
Confidence 4677777544 466 999999999888873
No 189
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.43 E-value=4.3e-12 Score=104.07 Aligned_cols=173 Identities=15% Similarity=0.076 Sum_probs=110.3
Q ss_pred ccccccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
.++.++|....++.+.+.+... ...+|+|+|++||||+++|+++.... .....+++.++|..... ..+...+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s---~r~~~pfv~v~c~~~~~-~~~~~~lfg 79 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS---SRWQGPFISLNCAALNE-NLLDSELFG 79 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC---CccCCCeEEEeCCCCCH-HHHHHHHcc
Confidence 3456789887777776665432 34579999999999999999998653 22245788899987532 222222111
Q ss_pred hHhhhhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------c
Q 025762 137 FAAVAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (248)
Q Consensus 137 ~~~~~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~ 196 (248)
....... .....+....+..+.|+|||++.++...|..|+.+++... ..+++|++++.. .
T Consensus 80 ~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred ccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence 1100000 0112344456678899999999999999999999998643 135788888642 4
Q ss_pred ccChHHHHhhhh--eeeeccCCc--cccchHHHHHHHHHHhhcC
Q 025762 197 RCTFSALFSFLL--FFMFFSLLD--QISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 197 ~~~~~~l~~r~~--~i~~~~~~~--~~~~~~~~~~l~~~~~~~~ 236 (248)
.+. +.|..|+. .|.++|+.+ +++...+..++...+.+.+
T Consensus 160 ~f~-~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~ 202 (326)
T PRK11608 160 KFR-ADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELG 202 (326)
T ss_pred Cch-HHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhC
Confidence 455 78888875 477777766 4553323333334444433
No 190
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.43 E-value=3.7e-12 Score=106.81 Aligned_cols=173 Identities=17% Similarity=0.084 Sum_probs=119.2
Q ss_pred ccccccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
....++|+...++.+.+.+..- ..-+|+|+|++||||..+|+++...- .....+++.++|......-.-.+++..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S---~R~~~PFVavNcaAip~~l~ESELFGh 215 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS---PRAKGPFIAVNCAAIPENLLESELFGH 215 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC---cccCCCceeeecccCCHHHHHHHhhcc
Confidence 5668899999888887777543 33469999999999999999999875 223458999999886443322223332
Q ss_pred hHhhh-hc-CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCC-------Cc
Q 025762 137 FAAVA-VG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY-------IS 196 (248)
Q Consensus 137 ~~~~~-~~-~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~-------~~ 196 (248)
.... .+ .....|.+..++++.||||||..||.+.|..|+++++++. -..+||.+||. ..
T Consensus 216 -ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G 294 (464)
T COG2204 216 -EKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAG 294 (464)
T ss_pred -cccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcC
Confidence 2211 11 2224567778899999999999999999999999998754 24568888874 35
Q ss_pred ccChHHHHhhhheeee--ccCCc--cccchHHHHHHHHHHhhcC
Q 025762 197 RCTFSALFSFLLFFMF--FSLLD--QISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 197 ~~~~~~l~~r~~~i~~--~~~~~--~~~~~~~~~~l~~~~~~~~ 236 (248)
.+- +.|..|..++.+ +|+.+ +++.......++..+...+
T Consensus 295 ~FR-eDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~ 337 (464)
T COG2204 295 RFR-EDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELG 337 (464)
T ss_pred CcH-HHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcC
Confidence 566 788889876554 44444 4443333444444555554
No 191
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.42 E-value=2.4e-12 Score=106.39 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=110.7
Q ss_pred cccccc-cc--HHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHH--HH
Q 025762 59 QVKDVA-HQ--EEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV--VR 131 (248)
Q Consensus 59 ~~~~~~-g~--~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 131 (248)
.|+.++ |. ..+......+.... ....++|+||+|+|||||++++++.+...+ ....++.+...+...... ++
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-~~a~v~y~~se~f~~~~v~a~~ 163 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-PNARVVYLTSEDFTNDFVKALR 163 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-CCceEEeccHHHHHHHHHHHHH
Confidence 566665 33 22223333333332 244599999999999999999999984332 233444444443321111 11
Q ss_pred H-HHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhcCCce-EEEEEeCCC----cccChHHH
Q 025762 132 T-KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVT-RFFFICNYI----SRCTFSAL 203 (248)
Q Consensus 132 ~-~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--~~~~~L~~~l~~~~~~~-~ii~~~n~~----~~~~~~~l 203 (248)
+ ....+... - ..++++|||++.+.. ..++.++.+++...... .+|+++..+ ..+. +.|
T Consensus 164 ~~~~~~Fk~~------------y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~-~rL 229 (408)
T COG0593 164 DNEMEKFKEK------------Y-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE-DRL 229 (408)
T ss_pred hhhHHHHHHh------------h-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc-HHH
Confidence 1 01111110 1 247999999999853 56888888888776555 466776432 3345 899
Q ss_pred Hhhhh---eeeeccCCccccchHHHHHHHHHHhhcCccccCceeeee
Q 025762 204 FSFLL---FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTYS 247 (248)
Q Consensus 204 ~~r~~---~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 247 (248)
.||+. .+.+.||+.+.. .++|...+...++...++.+.|.
T Consensus 230 ~SR~~~Gl~~~I~~Pd~e~r----~aiL~kka~~~~~~i~~ev~~~l 272 (408)
T COG0593 230 RSRLEWGLVVEIEPPDDETR----LAILRKKAEDRGIEIPDEVLEFL 272 (408)
T ss_pred HHHHhceeEEeeCCCCHHHH----HHHHHHHHHhcCCCCCHHHHHHH
Confidence 99976 699999999999 99999999999999988877653
No 192
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.42 E-value=4e-12 Score=106.83 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=117.0
Q ss_pred CCCccccccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
....|++++|....+..+.+..... ...+|+|.|.+||||..+|+++.+.- .....+++.++|... +...+...
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S---~R~~~PFIaiNCaAi-Pe~LlESE 315 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLS---PRANGPFIAINCAAI-PETLLESE 315 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcC---cccCCCeEEEecccC-CHHHHHHH
Confidence 3458999999988776666555433 33469999999999999999998864 444668999999875 33344443
Q ss_pred HHHhHhhhhcCCC---CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCC-----
Q 025762 134 IKTFAAVAVGSGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY----- 194 (248)
Q Consensus 134 ~~~~~~~~~~~~~---~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~----- 194 (248)
+-.+....+.... ..|.+..++.+-||||||+.||...|..|+++++++. -..++|.+||.
T Consensus 316 LFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~ 395 (560)
T COG3829 316 LFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM 395 (560)
T ss_pred HhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHH
Confidence 3333332222211 4566778899999999999999999999999998764 34568999984
Q ss_pred --CcccChHHHHhhhhe--eeeccCCccccchHHHHHHHHHHh
Q 025762 195 --ISRCTFSALFSFLLF--FMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 195 --~~~~~~~~l~~r~~~--i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
...+- +.|.-|..+ +.++|+-+ ..+.|-....+.+.
T Consensus 396 i~~G~FR-eDLYYRLNV~~i~iPPLRe--R~eDI~~L~~~Fl~ 435 (560)
T COG3829 396 IAEGTFR-EDLYYRLNVIPITIPPLRE--RKEDIPLLAEYFLD 435 (560)
T ss_pred HhcCcch-hhheeeeceeeecCCCccc--CcchHHHHHHHHHH
Confidence 24454 667777665 55555544 22222444444444
No 193
>PRK12377 putative replication protein; Provisional
Probab=99.42 E-value=7.7e-13 Score=103.57 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=85.1
Q ss_pred hccCCCccccccc----cHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 53 EKYRPKQVKDVAH----QEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 53 ~~~~~~~~~~~~g----~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
..+....|+.+.. +..+.......... ....+++|+|||||||||||.++++.+...+ . .+..+...+.
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g-~--~v~~i~~~~l-- 140 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKG-R--SVIVVTVPDV-- 140 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcC-C--CeEEEEHHHH--
Confidence 3444456776642 33333333333221 2345899999999999999999999995332 2 2232322221
Q ss_pred hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhcCCc-eEEEEEeCCCc-----cc
Q 025762 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS--MTEDAQNALRRTMETYSKV-TRFFFICNYIS-----RC 198 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~--l~~~~~~~L~~~l~~~~~~-~~ii~~~n~~~-----~~ 198 (248)
...+...... ............+.+||||||++. .+...+..|+.+++.++.. ..+|+|||... .+
T Consensus 141 ----~~~l~~~~~~--~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~ 214 (248)
T PRK12377 141 ----MSRLHESYDN--GQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL 214 (248)
T ss_pred ----HHHHHHHHhc--cchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHh
Confidence 1111100000 000000000112357999999954 5677888999999998864 56899999542 23
Q ss_pred ChHHHHhhhh-----eeeeccCC
Q 025762 199 TFSALFSFLL-----FFMFFSLL 216 (248)
Q Consensus 199 ~~~~l~~r~~-----~i~~~~~~ 216 (248)
. +.+.||.. .+.|...+
T Consensus 215 ~-~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 215 G-ERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred h-HHHHHHHhhCCCeEEEeCCcC
Confidence 3 56666642 36666544
No 194
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.41 E-value=5.2e-12 Score=109.09 Aligned_cols=180 Identities=17% Similarity=0.128 Sum_probs=115.2
Q ss_pred CccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
..|++++|+...++.+.+.+.. ....+|+|+|++||||+.+|+++.+... ....+++.++|..... ..+...+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~---r~~~pfv~inC~~l~e-~lleseLF 284 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSG---RRDFPFVAINCGAIAE-SLLEAELF 284 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcC---cCCCCEEEeccccCCh-hHHHHHhc
Confidence 4678899999888877776643 3445799999999999999999987642 2356889999987642 22222111
Q ss_pred HhHhhhhcC---CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC------
Q 025762 136 TFAAVAVGS---GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------ 195 (248)
Q Consensus 136 ~~~~~~~~~---~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~------ 195 (248)
......... ....+....++.+.|||||++.|+...|..|++++++.. ...++|++|+..
T Consensus 285 G~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~ 364 (526)
T TIGR02329 285 GYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQ 364 (526)
T ss_pred CCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhh
Confidence 111110000 112334455678999999999999999999999998753 123688888643
Q ss_pred -cccChHHHHhhhh--eeeeccCCc--cccchHHHHHHHHHHhhcCccccCc
Q 025762 196 -SRCTFSALFSFLL--FFMFFSLLD--QISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 196 -~~~~~~~l~~r~~--~i~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
..+. +.|..|+. .+.++|+.+ +++...+...+...+...++..++.
T Consensus 365 ~g~fr-~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ 415 (526)
T TIGR02329 365 QGRFR-RDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA 415 (526)
T ss_pred hcchh-HHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 2344 56777765 577777766 4553333344444444444444443
No 195
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.41 E-value=8.5e-12 Score=102.09 Aligned_cols=159 Identities=16% Similarity=0.020 Sum_probs=103.7
Q ss_pred CccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcC-------CCcccc----------------
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-------PELYKS---------------- 114 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~-------~~~~~~---------------- 114 (248)
..|..++|++.....|....-.....+++|.|+.|+|||+++++++..+-. ....+.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccc
Confidence 467778999999998887766666778999999999999999999999821 100000
Q ss_pred ---------ceEEeccCCCcchH-HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-
Q 025762 115 ---------RVLELNASDDRGIN-VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS- 183 (248)
Q Consensus 115 ---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~- 183 (248)
++-.++.+.....+ .+-.+--..+.......+.++....++++||++||++.++...++.|+++++.+.
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 00011111111111 1111100111111223345677788899999999999999999999999999852
Q ss_pred ------------CceEEEEEeCCC-cccChHHHHhhhh-eeeeccCCc
Q 025762 184 ------------KVTRFFFICNYI-SRCTFSALFSFLL-FFMFFSLLD 217 (248)
Q Consensus 184 ------------~~~~ii~~~n~~-~~~~~~~l~~r~~-~i~~~~~~~ 217 (248)
-...+|.|.|+. ..+. +.|++||. .+...++..
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLr-pqLlDRfg~~v~~~~~~~ 220 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELR-PQLLDRFGLEVDTHYPLD 220 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccc-hhhHhhhcceeeccCCCC
Confidence 222355566764 5677 99999987 577766665
No 196
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.6e-12 Score=110.44 Aligned_cols=156 Identities=24% Similarity=0.177 Sum_probs=109.1
Q ss_pred CccccccccHHHHHHHHHHH---HcC---------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-
Q 025762 58 KQVKDVAHQEEVVRVLTNTL---ETA---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l---~~~---------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~- 124 (248)
-.|.++.|.+++++.+.+.+ ... -+..++++||||||||.||++++.++ ..++..+..++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA------~VPFf~iSGS~FV 220 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDFV 220 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc------CCCceeccchhhh
Confidence 46889999988887776655 321 24469999999999999999999999 556666666553
Q ss_pred -----cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhhcCC-
Q 025762 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYSK- 184 (248)
Q Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~~~~- 184 (248)
.+...++++..+..... .+++||||+|... ..+.+.|+--|+.+..
T Consensus 221 emfVGvGAsRVRdLF~qAkk~a--------------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNA--------------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccC--------------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 23344555544432211 2599999999874 2367778888887774
Q ss_pred -ceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 185 -VTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 185 -~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
...++..||.++-++ ++|++ |+. .+....|+-... .++++-++....+.
T Consensus 287 ~gviviaaTNRpdVlD-~ALlRpgRFDRqI~V~~PDi~gR----e~IlkvH~~~~~l~ 339 (596)
T COG0465 287 EGVIVIAATNRPDVLD-PALLRPGRFDRQILVELPDIKGR----EQILKVHAKNKPLA 339 (596)
T ss_pred CceEEEecCCCcccch-HhhcCCCCcceeeecCCcchhhH----HHHHHHHhhcCCCC
Confidence 334556678888888 99887 666 577887877777 77777666555544
No 197
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.41 E-value=3.1e-12 Score=114.44 Aligned_cols=148 Identities=17% Similarity=0.133 Sum_probs=96.0
Q ss_pred ccccccHHHHHHHHHHHHcCCC---------------------CeEEEEcCCCCcHHHHHHHHHHHhcCCCc-cccceEE
Q 025762 61 KDVAHQEEVVRVLTNTLETANC---------------------PHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLE 118 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~---------------------~~ill~Gp~G~GKT~la~~la~~~~~~~~-~~~~~~~ 118 (248)
..+.|++.+++.+.-.+..+.. .||||+|+||||||.+|+++++......+ .+.....
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4677999999988877765521 17999999999999999999986521110 0011111
Q ss_pred eccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------Cc
Q 025762 119 LNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KV 185 (248)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~ 185 (248)
+.+... ..........+....|....+..++++|||++.+++..+..|+++|+... ..
T Consensus 530 vgLTa~---------~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar 600 (915)
T PTZ00111 530 VGLTAS---------IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAE 600 (915)
T ss_pred ccccch---------hhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCC
Confidence 111110 00000001112334555667778999999999999999999999998753 45
Q ss_pred eEEEEEeCCC-------------cccChHHHHhhhhe--eeeccCCcc
Q 025762 186 TRFFFICNYI-------------SRCTFSALFSFLLF--FMFFSLLDQ 218 (248)
Q Consensus 186 ~~ii~~~n~~-------------~~~~~~~l~~r~~~--i~~~~~~~~ 218 (248)
+++|.++|+. -.++ ++|+|||.. +.+..++.+
T Consensus 601 ~rVIAAaNP~~gryd~~~s~~eni~Lp-~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 601 TAILASCNPINSRYNKNKAVIENINIS-PSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred eEEEEEcCCcccccCcccCcccccCCC-hHHhhhhcEEEEecCCCChH
Confidence 6788888863 2366 999999974 334444433
No 198
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.38 E-value=1.1e-11 Score=107.73 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=105.5
Q ss_pred ccccccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
.+..++|+...++.+.+.+... ...+|+|+|++||||+++|+++.+.... ...+++.++|..... ..+...+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~~~-~~~e~~lfG 260 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAALPE-SLAESELFG 260 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccCCh-HHHHHHhcC
Confidence 5667899988887776666543 4457999999999999999999997522 245788899887642 222211111
Q ss_pred hHhhhhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------c
Q 025762 137 FAAVAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (248)
Q Consensus 137 ~~~~~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~ 196 (248)
....... .....+....++.+.|||||++.++...|..|++++++.. ...++|++|+.. .
T Consensus 261 ~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 340 (509)
T PRK05022 261 HVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG 340 (509)
T ss_pred ccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence 0000000 0112334456678899999999999999999999998643 245789998743 3
Q ss_pred ccChHHHHhhhhe--eeeccCCc--ccc
Q 025762 197 RCTFSALFSFLLF--FMFFSLLD--QIS 220 (248)
Q Consensus 197 ~~~~~~l~~r~~~--i~~~~~~~--~~~ 220 (248)
.+. +.|..|+.. |.++|+.+ +++
T Consensus 341 ~f~-~dL~~rl~~~~i~lPpLreR~eDI 367 (509)
T PRK05022 341 RFR-ADLYHRLSVFPLSVPPLRERGDDV 367 (509)
T ss_pred Ccc-HHHHhcccccEeeCCCchhchhhH
Confidence 455 777777654 66777666 355
No 199
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.38 E-value=1.3e-11 Score=110.39 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=108.6
Q ss_pred CccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
..|++++|....++.+.+.+.. ....+|+|+|++||||+++|+++.+.... ...+++.++|...........++.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r---~~~pfv~vnc~~~~~~~~~~elfg 398 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER---AAGPYIAVNCQLYPDEALAEEFLG 398 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc---cCCCeEEEECCCCChHHHHHHhcC
Confidence 4688899988877766655543 23446999999999999999999887521 245888899887643222222222
Q ss_pred HhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------cc
Q 025762 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SR 197 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~ 197 (248)
... .....-..+....++.+.|||||++.++...|..|++++++.. -..++|++|+.. ..
T Consensus 399 ~~~--~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~ 476 (638)
T PRK11388 399 SDR--TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNR 476 (638)
T ss_pred CCC--cCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCC
Confidence 110 0011112334445678999999999999999999999998653 135688888742 34
Q ss_pred cChHHHHhhhhe--eeeccCCc--cccchHHHHHHHHHHh
Q 025762 198 CTFSALFSFLLF--FMFFSLLD--QISFDKEYIRIIYAST 233 (248)
Q Consensus 198 ~~~~~l~~r~~~--i~~~~~~~--~~~~~~~~~~l~~~~~ 233 (248)
+. +.|..|+.. +.++|+.+ +++ ...+..++.
T Consensus 477 f~-~dL~~~l~~~~i~lPpLreR~~Di----~~L~~~~l~ 511 (638)
T PRK11388 477 FS-RQLYYALHAFEITIPPLRMRREDI----PALVNNKLR 511 (638)
T ss_pred Ch-HHHhhhhceeEEeCCChhhhhhHH----HHHHHHHHH
Confidence 45 667777664 66666665 355 444444433
No 200
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.6e-12 Score=96.65 Aligned_cols=139 Identities=24% Similarity=0.261 Sum_probs=90.6
Q ss_pred ccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
..+++-|-+++++.|.+.+... .+..++++||||||||.+|+++|+.. +.-++.+-.+...
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------dacfirvigselv 248 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------DACFIRVIGSELV 248 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------CceEEeehhHHHH
Confidence 4567777788888887776542 34469999999999999999999986 3344444444321
Q ss_pred ch------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhhc-----C
Q 025762 126 GI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETY-----S 183 (248)
Q Consensus 126 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l-----------~~~~~~~L~~~l~~~-----~ 183 (248)
.. ..+++++.. + ..++.+++|+||+|.+ +.+++..+++++... .
T Consensus 249 qkyvgegarmvrelf~m-a-------------rtkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr 314 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEM-A-------------RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 314 (435)
T ss_pred HHHhhhhHHHHHHHHHH-h-------------cccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC
Confidence 11 112222111 1 1233479999999977 245666666666532 2
Q ss_pred CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCcc
Q 025762 184 KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQ 218 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~ 218 (248)
++..++++||.+..++ ++|.+ |.. .++|.-|+-+
T Consensus 315 gnikvlmatnrpdtld-pallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 315 GNIKVLMATNRPDTLD-PALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred CCeEEEeecCCCCCcC-HhhcCCcccccceeccCCccc
Confidence 5567899999999999 98876 443 3555555443
No 201
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.37 E-value=1e-11 Score=103.17 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=111.1
Q ss_pred ccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
.+.+++|+..++..+...+.. ....+|+|.|.+||||..+|+++.+.- .....+++.++|..... ..+..-+-.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S---~R~~kPfV~~NCAAlPe-sLlESELFG 296 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS---PRRDKPFVKLNCAALPE-SLLESELFG 296 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC---cccCCCceeeeccccch-HHHHHHHhc
Confidence 566899999888877776643 334479999999999999999998864 33466899999987633 333333332
Q ss_pred hHhhhhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCC-------Cc
Q 025762 137 FAAVAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY-------IS 196 (248)
Q Consensus 137 ~~~~~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~-------~~ 196 (248)
..+..+. ...+.|.+..++++-||+|||+.+|...|..|++++.++. -.+++|.+||. ..
T Consensus 297 HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G 376 (550)
T COG3604 297 HEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDG 376 (550)
T ss_pred ccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcC
Confidence 2222222 2346788888999999999999999999999999998754 34568999984 34
Q ss_pred ccChHHHHhhhhe--eeeccCCc
Q 025762 197 RCTFSALFSFLLF--FMFFSLLD 217 (248)
Q Consensus 197 ~~~~~~l~~r~~~--i~~~~~~~ 217 (248)
++- ..|..|..+ +.++|+-+
T Consensus 377 ~FR-aDLYyRLsV~Pl~lPPLRE 398 (550)
T COG3604 377 EFR-ADLYYRLSVFPLELPPLRE 398 (550)
T ss_pred cch-hhhhhcccccccCCCCccc
Confidence 455 667778765 55555544
No 202
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.37 E-value=1.1e-11 Score=111.36 Aligned_cols=174 Identities=18% Similarity=0.143 Sum_probs=107.7
Q ss_pred CccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
..|.+++|+...++.+.+.+.. ....+|+|+|++|||||++|+++...... ...+++.++|..... ..+...+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r---~~~~~v~i~c~~~~~-~~~~~~lf 448 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR---NNRRMVKMNCAAMPA-GLLESDLF 448 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC---CCCCeEEEecccCCh-hHhhhhhc
Confidence 3577899998888777655542 34447999999999999999999887622 245788888876532 21211111
Q ss_pred HhHhhhhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------
Q 025762 136 TFAAVAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------- 195 (248)
Q Consensus 136 ~~~~~~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~------- 195 (248)
........ .....+....+..++|+|||++.++.+.+..|+.++++.. ...++|++|+..
T Consensus 449 g~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~ 528 (686)
T PRK15429 449 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 528 (686)
T ss_pred CcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHc
Confidence 10000000 0011222334556899999999999999999999998643 345788888743
Q ss_pred cccChHHHHhhhhe--eeeccCCc--cccchHHHHHHHHHHhhcC
Q 025762 196 SRCTFSALFSFLLF--FMFFSLLD--QISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 196 ~~~~~~~l~~r~~~--i~~~~~~~--~~~~~~~~~~l~~~~~~~~ 236 (248)
..+. +.+..|+.. |.++|+.+ +++...+...+..++.+.+
T Consensus 529 ~~f~-~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~ 572 (686)
T PRK15429 529 REFR-SDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMG 572 (686)
T ss_pred Cccc-HHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcC
Confidence 2344 557777654 66666665 4452223333344444333
No 203
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.4e-12 Score=98.49 Aligned_cols=126 Identities=24% Similarity=0.312 Sum_probs=85.9
Q ss_pred ccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
+|+.+-|.-.++..+.+.+.-+ -+..++|+||||+|||.+|++++..+ +..++.+..+...
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m------g~nfl~v~ss~lv 203 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM------GVNFLKVVSSALV 203 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc------CCceEEeeHhhhh
Confidence 6777777777777777665432 23359999999999999999999999 4445545444332
Q ss_pred ------chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhhcC-----
Q 025762 126 ------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETYS----- 183 (248)
Q Consensus 126 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l-----------~~~~~~~L~~~l~~~~----- 183 (248)
+...+++....... . ..+++++||+|.. +...+..|+++++.-.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~----~----------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l 269 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYARE----V----------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL 269 (388)
T ss_pred hhhcccHHHHHHHHHHHHhh----h----------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc
Confidence 22223333322211 1 1269999999976 2456777777776433
Q ss_pred CceEEEEEeCCCcccChHHHHh
Q 025762 184 KVTRFFFICNYISRCTFSALFS 205 (248)
Q Consensus 184 ~~~~ii~~~n~~~~~~~~~l~~ 205 (248)
..+.+|+++|+++.+. ++|++
T Consensus 270 ~rVk~ImatNrpdtLd-paLlR 290 (388)
T KOG0651|consen 270 HRVKTIMATNRPDTLD-PALLR 290 (388)
T ss_pred ccccEEEecCCccccc-hhhcC
Confidence 4566999999999999 88877
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.36 E-value=8.2e-12 Score=97.58 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=86.3
Q ss_pred hhccCCCccccccc----cHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 52 VEKYRPKQVKDVAH----QEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 52 ~~~~~~~~~~~~~g----~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
.+.+....|+.+.. +..++..+..+.... ...+++|+|+||||||+|+.+++..+...+ ..+..+...+.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l- 138 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADI- 138 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHH-
Confidence 34455667776652 233444444444332 234799999999999999999999984432 23333332221
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEEeCCCc-----c
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYIS-----R 197 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--~~~~~L~~~l~~~~~-~~~ii~~~n~~~-----~ 197 (248)
+......+.. ...............++|||||++.... -....|+.+++.++. ...+|++||... .
T Consensus 139 ----~~~l~~~~~~--~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 139 ----MSAMKDTFSN--SETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred ----HHHHHHHHhh--ccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 1111001000 0000000000012457999999988743 345678899998775 556899999542 2
Q ss_pred cChHHHHhhhh-----eeeeccCC
Q 025762 198 CTFSALFSFLL-----FFMFFSLL 216 (248)
Q Consensus 198 ~~~~~l~~r~~-----~i~~~~~~ 216 (248)
+. +.+.+|+. .+.|...+
T Consensus 213 ~g-~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 213 LG-ERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred hC-hHHHHHHHHCCceEEEeeCCc
Confidence 44 56667652 46676543
No 205
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.35 E-value=4.3e-12 Score=108.44 Aligned_cols=154 Identities=24% Similarity=0.229 Sum_probs=99.7
Q ss_pred CccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc------C-------CC
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA------S-------DD 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~------~-------~~ 124 (248)
.++.++.|++.+++.+.-.. ..+++++|+||||+|||++++.+...+.... ....++... . ..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--~~G~~llliG~~GsGKTtLak~L~gllpp~~--g~e~le~~~i~s~~g~~~~~~~~~~ 263 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--AGGHNLLLIGPPGTGKTMLASRINGLLPDLS--NEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred cCeEEEECcHHHHhhhheec--cCCcEEEEECCCCCcHHHHHHHHhccCCCCC--CcEEEecchhhhhhccccccCCcCC
Confidence 37778889988888775333 3556999999999999999999998762111 111111111 0 00
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEE
Q 025762 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFI 191 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~ 191 (248)
+.....+...........+.....+....+++++|||||++.+++..++.|++.|++.. ....+|.+
T Consensus 264 rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 264 RPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred CCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 01110111111111111222345667778889999999999999999999999997654 33567888
Q ss_pred eCCCc---------------------ccChHHHHhhhhe-eeeccCC
Q 025762 192 CNYIS---------------------RCTFSALFSFLLF-FMFFSLL 216 (248)
Q Consensus 192 ~n~~~---------------------~~~~~~l~~r~~~-i~~~~~~ 216 (248)
+|+.. .+. .++++||.. +.+.+++
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls-~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLS-GPFLDRFDLSLEIPLPP 389 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCC-HhHHhhccEEEEeCCCC
Confidence 87532 466 799999984 7787774
No 206
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.7e-12 Score=104.18 Aligned_cols=160 Identities=19% Similarity=0.134 Sum_probs=100.3
Q ss_pred cCCCccccccccHHHHHHHHHHHHcC------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
.++-.|+++.|.+.+.+.+...+-.. -...+++.||||+|||.|++++|.+. ...+..+.++
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~------~atff~iSas 220 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES------GATFFNISAS 220 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh------cceEeeccHH
Confidence 34457888899888887776554321 23359999999999999999999998 4455556665
Q ss_pred CCcchHHH--HHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHH-HHHHHHHh---hcCCc
Q 025762 123 DDRGINVV--RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQ-NALRRTME---TYSKV 185 (248)
Q Consensus 123 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~-~~L~~~l~---~~~~~ 185 (248)
...+.... ...+..+.... .+....|+||||+|.+- +... +.|++..- .....
T Consensus 221 sLtsK~~Ge~eK~vralf~vA----------r~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~dr 290 (428)
T KOG0740|consen 221 SLTSKYVGESEKLVRALFKVA----------RSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDR 290 (428)
T ss_pred HhhhhccChHHHHHHHHHHHH----------HhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCe
Confidence 54333211 11111111111 12234699999999872 2222 33333332 12234
Q ss_pred eEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhc
Q 025762 186 TRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
..+|.+||.++.++ ++++.|+. .+.++.|+.+.. ..+++.++.+.
T Consensus 291 vlvigaTN~P~e~D-ea~~Rrf~kr~yiplPd~etr----~~~~~~ll~~~ 336 (428)
T KOG0740|consen 291 VLVIGATNRPWELD-EAARRRFVKRLYIPLPDYETR----SLLWKQLLKEQ 336 (428)
T ss_pred EEEEecCCCchHHH-HHHHHHhhceeeecCCCHHHH----HHHHHHHHHhC
Confidence 55777789999999 99999988 466666666666 55555555554
No 207
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.35 E-value=3e-11 Score=105.05 Aligned_cols=176 Identities=17% Similarity=0.120 Sum_probs=109.6
Q ss_pred CCccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHH
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (248)
...|++++|....++.+...+.. .....|+|+|++||||+++|+++.... .....+++.++|..... ..+...+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s---~r~~~pfv~inca~~~~-~~~e~el 275 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS---PRGKKPFLALNCASIPD-DVVESEL 275 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC---CCCCCCeEEeccccCCH-HHHHHHh
Confidence 35788999988877666555532 234479999999999999999976653 12245788889887542 2222111
Q ss_pred HHhHhhhh-cC-CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC------
Q 025762 135 KTFAAVAV-GS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------ 195 (248)
Q Consensus 135 ~~~~~~~~-~~-~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~------ 195 (248)
........ .. ....+....++.+.|+|||++.+++..|..|++++++.. ...++|++|+..
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~ 355 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 355 (520)
T ss_pred cCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 11000000 00 011233445667899999999999999999999998742 234688887642
Q ss_pred -cccChHHHHhhhh--eeeeccCCcc--ccchHHHHHHHHHHhhcCc
Q 025762 196 -SRCTFSALFSFLL--FFMFFSLLDQ--ISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 196 -~~~~~~~l~~r~~--~i~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 237 (248)
..+. +.|..|+. .+.++|+.+. ++...+...+...+.+.+.
T Consensus 356 ~g~f~-~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~ 401 (520)
T PRK10820 356 KGEFR-EDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGV 401 (520)
T ss_pred cCCcc-HHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCC
Confidence 3355 67888865 4777777663 4522223334444555543
No 208
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.35 E-value=2.2e-11 Score=92.32 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=117.9
Q ss_pred cCCCccccccccHHHHHHHHH----HHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHH
Q 025762 55 YRPKQVKDVAHQEEVVRVLTN----TLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~----~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (248)
+.+-++.+++|-+.+.+.|.+ .+......|++++|..|||||++++++..++...+. ..++++..+......+
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl---rLVEV~k~dl~~Lp~l 130 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL---RLVEVDKEDLATLPDL 130 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC---eEEEEcHHHHhhHHHH
Confidence 444577889998777766643 344445668999999999999999999999866654 5888888877665555
Q ss_pred HHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHh----hcCCceEEEEEeCCCcccC------
Q 025762 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTME----TYSKVTRFFFICNYISRCT------ 199 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-~~~~~~L~~~l~----~~~~~~~ii~~~n~~~~~~------ 199 (248)
.+.++.. ..+-|||.||+..=. ......|..+++ .++.++.|-.|+|....++
T Consensus 131 ~~~Lr~~----------------~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn 194 (287)
T COG2607 131 VELLRAR----------------PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDN 194 (287)
T ss_pred HHHHhcC----------------CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhC
Confidence 5544432 224589999965433 344556666665 4455665666666433322
Q ss_pred ---------------hHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 200 ---------------FSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 200 ---------------~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
--.+.+||. .+.|.|+++++. ..++...+.+.++..+++.+.
T Consensus 195 ~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~Y----L~~V~~~a~~~~l~~~~e~l~ 252 (287)
T COG2607 195 EGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEY----LKIVDHYAKHFGLDISDEELH 252 (287)
T ss_pred CCcccccChhHHHHHhhchhhhcceeecccCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 012344776 599999999999 999999999999998776543
No 209
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.33 E-value=5.2e-12 Score=104.36 Aligned_cols=70 Identities=19% Similarity=0.068 Sum_probs=51.5
Q ss_pred CCceEEEEeCCCCCC------------HHHHHHHHHHHhhcC----------CceEEEEEeC----CCcccChHHHHhhh
Q 025762 154 PPYKIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFICN----YISRCTFSALFSFL 207 (248)
Q Consensus 154 ~~~~vlilDEi~~l~------------~~~~~~L~~~l~~~~----------~~~~ii~~~n----~~~~~~~~~l~~r~ 207 (248)
...+++||||+|++. ..+|..|+.++|... .+..||+++. .+..+. |++.-|+
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlI-PEl~GR~ 324 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLI-PELQGRF 324 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhcc-HHHhCcc
Confidence 457899999999984 237899999998632 2222444442 345567 9999999
Q ss_pred h-eeeeccCCccccchHHHHHH
Q 025762 208 L-FFMFFSLLDQISFDKEYIRI 228 (248)
Q Consensus 208 ~-~i~~~~~~~~~~~~~~~~~l 228 (248)
. ++.+.+++.+++ ..+|
T Consensus 325 Pi~v~L~~L~~edL----~rIL 342 (441)
T TIGR00390 325 PIRVELQALTTDDF----ERIL 342 (441)
T ss_pred ceEEECCCCCHHHH----HHHh
Confidence 8 599999999999 6555
No 210
>PRK08116 hypothetical protein; Validated
Probab=99.32 E-value=1.7e-11 Score=97.68 Aligned_cols=125 Identities=17% Similarity=0.102 Sum_probs=73.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEe
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilD 162 (248)
..++|+|++||||||||.++++.+...+ ..++.++..+. +......+... ...............++||||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~l-----l~~i~~~~~~~-~~~~~~~~~~~l~~~dlLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQL-----LNRIKSTYKSS-GKEDENEIIRSLVNADLLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHH-----HHHHHHHHhcc-ccccHHHHHHHhcCCCEEEEe
Confidence 3599999999999999999999985432 23333333221 11111110000 000000000001234799999
Q ss_pred CCC--CCCHHHHHHHHHHHhhcCCc-eEEEEEeCCCcc-----cChHHHHhh----hheeeeccCCc
Q 025762 163 EAD--SMTEDAQNALRRTMETYSKV-TRFFFICNYISR-----CTFSALFSF----LLFFMFFSLLD 217 (248)
Q Consensus 163 Ei~--~l~~~~~~~L~~~l~~~~~~-~~ii~~~n~~~~-----~~~~~l~~r----~~~i~~~~~~~ 217 (248)
|++ ..+...++.|+.+++.++.. ..+|+|||.... +. ..+.+| +..+.|..++.
T Consensus 186 Dlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~-~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 186 DLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYG-KRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh-HHHHHHHHHcCEEEEeeCcCh
Confidence 994 55677888899999987543 458999986432 34 678888 34577776554
No 211
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.32 E-value=2.3e-11 Score=106.91 Aligned_cols=139 Identities=16% Similarity=0.085 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHh--hhhcCCCCC
Q 025762 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGSGQRR 148 (248)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 148 (248)
.+|.-+.-.....+|+|.|+||||||++|++++..+... .+++.+.... ....+-..+ .+.. .........
T Consensus 5 ~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~--t~d~L~G~i-dl~~~~~~g~~~~~~ 77 (589)
T TIGR02031 5 LALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGV--TEDRLIGGI-DVEESLAGGQRVTQP 77 (589)
T ss_pred HHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCccc--chhhcccch-hhhhhhhcCcccCCC
Confidence 333333333446689999999999999999999986321 1344443210 000000000 0000 001112335
Q ss_pred CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEEeCCCc---ccChHHHHhhhhe-ee
Q 025762 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RCTFSALFSFLLF-FM 211 (248)
Q Consensus 149 ~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~n~~~---~~~~~~l~~r~~~-i~ 211 (248)
+....++.++|+|||++++++..++.|+++|++.. ....+|.++|... .+. +++.+|+.. +.
T Consensus 78 G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~-~~LldRf~l~v~ 156 (589)
T TIGR02031 78 GLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLP-DHLLDRLALHVS 156 (589)
T ss_pred CCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCC-HHHHHhccCeee
Confidence 55566778999999999999999999999998764 2356777777653 687 999999885 44
Q ss_pred eccCCc
Q 025762 212 FFSLLD 217 (248)
Q Consensus 212 ~~~~~~ 217 (248)
+..++.
T Consensus 157 ~~~~~~ 162 (589)
T TIGR02031 157 LEDVAS 162 (589)
T ss_pred cCCCCC
Confidence 544433
No 212
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.31 E-value=2.7e-11 Score=98.69 Aligned_cols=83 Identities=10% Similarity=-0.120 Sum_probs=60.7
Q ss_pred CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCC-----------ceEEEEEeCCC-------cccChHHHHhhhhe
Q 025762 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-----------VTRFFFICNYI-------SRCTFSALFSFLLF 209 (248)
Q Consensus 148 ~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~-----------~~~ii~~~n~~-------~~~~~~~l~~r~~~ 209 (248)
.|....++++++-++|+.+.+.+.++.|+.+++++.- ...||+++|.. .... +++++||..
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~-eaf~dR~~~ 307 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKN-EALLDRIIK 307 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccc-hhhhhceEE
Confidence 3555677889999999999999999999999986541 12356777754 3566 999999998
Q ss_pred eeeccCCc-cccchHHHHHHHHHHhhc
Q 025762 210 FMFFSLLD-QISFDKEYIRIIYASTLK 235 (248)
Q Consensus 210 i~~~~~~~-~~~~~~~~~~l~~~~~~~ 235 (248)
+.++.+.. ++- .++.++.+...
T Consensus 308 i~vpY~l~~~~E----~~Iy~k~~~~s 330 (361)
T smart00763 308 VKVPYCLRVSEE----AQIYEKLLRNS 330 (361)
T ss_pred EeCCCcCCHHHH----HHHHHHHhccC
Confidence 88876666 333 45555555544
No 213
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.4e-11 Score=107.31 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=126.1
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC----ccccceEEeccCCC
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD 124 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~~~~ 124 (248)
...+..-+.-.++.++|++..++++.+.+......|-+++|+||+|||.++..+|....... ..+..++.++.+..
T Consensus 158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 158 RDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred hhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 34455555567888999999999999999988888999999999999999999999984332 23445555555432
Q ss_pred c----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhcCCceEEEEE
Q 025762 125 R----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFI 191 (248)
Q Consensus 125 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~---------~~~~~~L~~~l~~~~~~~~ii~~ 191 (248)
. ......+.++.+....... +.-+|||||+|.+- -+..|.|...+..+. .++|-+
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~----------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe--L~~IGA 305 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKS----------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE--LRCIGA 305 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcC----------CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC--eEEEEe
Confidence 1 1222333334333322221 13599999999771 346677777776654 445666
Q ss_pred eC-----CCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 192 CN-----YISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 192 ~n-----~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
|+ ....-+ ++|.+||+.+....|+.++...+++.+-.++....++.+.+.++
T Consensus 306 TT~~EYRk~iEKD-~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al 362 (786)
T COG0542 306 TTLDEYRKYIEKD-AALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEAL 362 (786)
T ss_pred ccHHHHHHHhhhc-hHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHH
Confidence 64 234456 99999999999999999999555555556666666766665544
No 214
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.4e-12 Score=101.21 Aligned_cols=108 Identities=27% Similarity=0.295 Sum_probs=72.4
Q ss_pred ccccccHHHHHHHHHHHHcC---------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-
Q 025762 61 KDVAHQEEVVRVLTNTLETA---------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~---------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~- 124 (248)
+.++||+.+++.|.-++.++ ...|+++.||+|+|||.||+.+|+.+ +.++...++...
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L------nVPFaiADATtLT 134 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL------NVPFAIADATTLT 134 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh------CCCeeeccccchh
Confidence 35679998887665444332 24479999999999999999999999 555555555433
Q ss_pred ----cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh
Q 025762 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMET 181 (248)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~ 181 (248)
.+. .+.+.+..+..... -.+..+.+++++|||+|++. ..+|.+|++++|.
T Consensus 135 EAGYVGE-DVENillkLlqaad------ydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 135 EAGYVGE-DVENILLKLLQAAD------YDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred hccccch-hHHHHHHHHHHHcc------cCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 222 23333333322111 12234567899999999983 4589999999985
No 215
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.28 E-value=2.3e-11 Score=95.08 Aligned_cols=85 Identities=12% Similarity=0.025 Sum_probs=74.1
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC------------CCcccChHHHHhhhheeeeccCCccccchH
Q 025762 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRCTFSALFSFLLFFMFFSLLDQISFDK 223 (248)
Q Consensus 156 ~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n------------~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~ 223 (248)
.+||||||+|.++-+...+|.+.++..-.+ .++++|| .++.++ -.+++|..++.-.|++.+++
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP-~D~lDR~lII~t~py~~~d~--- 363 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIP-IDLLDRMLIISTQPYTEEDI--- 363 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCc-HHHhhhhheeecccCcHHHH---
Confidence 489999999999999999999999886544 3566665 367788 89999999999999999999
Q ss_pred HHHHHHHHHhhcCccccCceeee
Q 025762 224 EYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
..+|+..|.+|.++.++.++.+
T Consensus 364 -~~IL~iRc~EEdv~m~~~A~d~ 385 (454)
T KOG2680|consen 364 -KKILRIRCQEEDVEMNPDALDL 385 (454)
T ss_pred -HHHHHhhhhhhccccCHHHHHH
Confidence 9999999999999999887654
No 216
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.28 E-value=1.2e-11 Score=100.04 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=70.1
Q ss_pred cCCCcccccccc----HHHHHHHHHHHHcC----CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 55 YRPKQVKDVAHQ----EEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 55 ~~~~~~~~~~g~----~~~~~~l~~~l~~~----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
+....|+++... ..+......++... ...+++|+||+|||||+|+.++++.+... +....++. .++.
T Consensus 121 ~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~--~~~l-- 195 (306)
T PRK08939 121 LLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLH--FPEF-- 195 (306)
T ss_pred HhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEE--HHHH--
Confidence 334556655432 23333334444421 34689999999999999999999999532 22232222 2211
Q ss_pred hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--HHHHHHH-HHHHhhc-CCceEEEEEeCCCc
Q 025762 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNAL-RRTMETY-SKVTRFFFICNYIS 196 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--~~~~~~L-~~~l~~~-~~~~~ii~~~n~~~ 196 (248)
+......... ...........+.+||||||++.-+ +-....+ ..+++.+ .....+|+|||...
T Consensus 196 ---~~~lk~~~~~----~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~ 262 (306)
T PRK08939 196 ---IRELKNSISD----GSVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDF 262 (306)
T ss_pred ---HHHHHHHHhc----CcHHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCH
Confidence 1111111000 0000000012235799999988654 4444344 4456766 46677999999653
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.28 E-value=2.9e-11 Score=98.66 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEE
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlil 161 (248)
..+++|+||+|||||||+.++++.+...+ ..++.+...+.. ..+... ....... ...........++|||
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l~--~~l~~~---~~~~~~~--~~~~~~~l~~~DLLII 252 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADELI--EILREI---RFNNDKE--LEEVYDLLINCDLLII 252 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHHH--HHHHHH---Hhccchh--HHHHHHHhccCCEEEE
Confidence 46899999999999999999999985432 233333333221 111110 0000000 0000001123479999
Q ss_pred eCCCCC--CHHHHHHHHHHHhhcCC-ceEEEEEeCCCcc-----cChHHHHhhhh----eeeec
Q 025762 162 DEADSM--TEDAQNALRRTMETYSK-VTRFFFICNYISR-----CTFSALFSFLL----FFMFF 213 (248)
Q Consensus 162 DEi~~l--~~~~~~~L~~~l~~~~~-~~~ii~~~n~~~~-----~~~~~l~~r~~----~i~~~ 213 (248)
||++.. .....+.|+.+++.+.. ...+|++||.... +. +.+.||+. .+.|.
T Consensus 253 DDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~-eri~SRL~~~~~~i~~~ 315 (329)
T PRK06835 253 DDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS-ERISSRLLGNFTLLKFY 315 (329)
T ss_pred eccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh-HHHHHHHHcCCEEEEec
Confidence 999665 56677889999998864 3568999985322 34 67788854 35554
No 218
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.28 E-value=4.5e-11 Score=98.93 Aligned_cols=69 Identities=17% Similarity=0.077 Sum_probs=50.8
Q ss_pred CceEEEEeCCCCCC------------HHHHHHHHHHHhhcC----------CceEEEEEeC----CCcccChHHHHhhhh
Q 025762 155 PYKIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFICN----YISRCTFSALFSFLL 208 (248)
Q Consensus 155 ~~~vlilDEi~~l~------------~~~~~~L~~~l~~~~----------~~~~ii~~~n----~~~~~~~~~l~~r~~ 208 (248)
..+++||||+|++. ..+|..|+.++|... .+..||+++. .+..+. |++..|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlI-PEl~GR~P 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLI-PELQGRFP 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhcc-HHHhCccc
Confidence 57899999999984 337889999998632 2222444432 345567 99999998
Q ss_pred -eeeeccCCccccchHHHHHH
Q 025762 209 -FFMFFSLLDQISFDKEYIRI 228 (248)
Q Consensus 209 -~i~~~~~~~~~~~~~~~~~l 228 (248)
++.+.+++.+++ ..+|
T Consensus 328 i~v~L~~L~~~dL----~~IL 344 (443)
T PRK05201 328 IRVELDALTEEDF----VRIL 344 (443)
T ss_pred eEEECCCCCHHHH----HHHh
Confidence 589999999999 5555
No 219
>PRK06921 hypothetical protein; Provisional
Probab=99.26 E-value=7e-11 Score=93.98 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEE
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 160 (248)
...+++|+|+||+|||||+.++++.+....+. .++.+...+. ...+............ .....+|||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~--~v~y~~~~~l--~~~l~~~~~~~~~~~~---------~~~~~dlLi 182 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV--PVLYFPFVEG--FGDLKDDFDLLEAKLN---------RMKKVEVLF 182 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc--eEEEEEHHHH--HHHHHHHHHHHHHHHH---------HhcCCCEEE
Confidence 45689999999999999999999998543122 2233332221 1111111111100000 012347999
Q ss_pred EeCCCC-------CCHHHHHHHHHHHhhcCC-ceEEEEEeCCC
Q 025762 161 LDEADS-------MTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (248)
Q Consensus 161 lDEi~~-------l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~ 195 (248)
|||++. .+.-....|+.+++.+.. ...+|++||..
T Consensus 183 IDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 183 IDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred EeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999943 445566789999998774 35588999853
No 220
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.26 E-value=8e-11 Score=103.69 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=43.7
Q ss_pred CccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
..+++++|++++...+..++.... +++|+||||||||++++++++.+.+.
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch
Confidence 356788999999999998887765 99999999999999999999998543
No 221
>PF13173 AAA_14: AAA domain
Probab=99.25 E-value=5.5e-11 Score=84.37 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=78.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHH-HHHHhHhhhhcCCCCCCCCCCCCceEEE
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-KIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vli 160 (248)
.+.++|+||.|||||++++.+++.+. ....++.++..+......... ....+... .. .+..++|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~i~ 66 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLLEYFLEL-IK----------PGKKYIF 66 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhHHHHHHh-hc----------cCCcEEE
Confidence 35799999999999999999999884 124566666665433221110 11111111 10 0246899
Q ss_pred EeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcc----cChHHHHhhhheeeeccCCcccc
Q 025762 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR----CTFSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 161 lDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~----~~~~~l~~r~~~i~~~~~~~~~~ 220 (248)
|||+++++ +....+..+.+.. ....+++++..... .. ..+..|...+.+.|++-.|.
T Consensus 67 iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~-~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 67 IDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIA-ESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred Eehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhccc-ccCCCeEEEEEECCCCHHHh
Confidence 99999997 4666666666655 55667887764333 33 55667888899999987764
No 222
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=7.1e-10 Score=88.89 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=94.4
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (248)
.|+.....+..|-.-.++..+...+...+.. ....++|+||+|+|||++++.++..+..... ....+.........
T Consensus 11 ~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~---~~~~~~~~~~~~~~ 86 (269)
T TIGR03015 11 KPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQ-REGFILITGEVGAGKTTLIRNLLKRLDQERV---VAAKLVNTRVDAED 86 (269)
T ss_pred CCCCCCCCHHHhCCCHHHHHHHHHHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe---EEeeeeCCCCCHHH
Confidence 4555444333332223444555555544432 3346999999999999999999998743211 11111111111111
Q ss_pred HHHHHHHHhHhhhhcCCCC-----------CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC---CceEEEEEeCC
Q 025762 129 VVRTKIKTFAAVAVGSGQR-----------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNY 194 (248)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~---~~~~ii~~~n~ 194 (248)
.+......+... ...... .......+..+++|||++.++....+.|..+.+... ....+++++..
T Consensus 87 ~l~~i~~~lG~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~ 165 (269)
T TIGR03015 87 LLRMVAADFGLE-TEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP 165 (269)
T ss_pred HHHHHHHHcCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH
Confidence 111111111000 000000 000012345699999999999888777765544321 22235666543
Q ss_pred C------cccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcC
Q 025762 195 I------SRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 195 ~------~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (248)
. .... ..+.+|+. .+.+.+++.+++ .+++...+...+
T Consensus 166 ~~~~~l~~~~~-~~l~~r~~~~~~l~~l~~~e~----~~~l~~~l~~~g 209 (269)
T TIGR03015 166 EFRETLQSPQL-QQLRQRIIASCHLGPLDREET----REYIEHRLERAG 209 (269)
T ss_pred HHHHHHcCchh-HHHHhheeeeeeCCCCCHHHH----HHHHHHHHHHcC
Confidence 2 1112 45677744 689999999999 777777766554
No 223
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.24 E-value=1.4e-10 Score=90.68 Aligned_cols=168 Identities=22% Similarity=0.224 Sum_probs=107.7
Q ss_pred cccccHHHHHHHHHHHHcC----C---CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccce----EEeccCCCcchHHH
Q 025762 62 DVAHQEEVVRVLTNTLETA----N---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV----LELNASDDRGINVV 130 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~----~---~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 130 (248)
.+.||.-+++.+...++.. . +--+-|+|+|||||+++++.+|+.+...+..+..+ -..+.+.......+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 4568877777776666542 2 22388999999999999999999986555433322 22333444444445
Q ss_pred HHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------CceEEEEEeCCCcccC----
Q 025762 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------KVTRFFFICNYISRCT---- 199 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------~~~~ii~~~n~~~~~~---- 199 (248)
+..++........ ..++.++|+||+|+|++...+.|...++.++ ....+|+.+|......
T Consensus 163 k~eL~~~v~~~v~---------~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~a 233 (344)
T KOG2170|consen 163 KEELKNRVRGTVQ---------ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIA 233 (344)
T ss_pred HHHHHHHHHHHHH---------hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHH
Confidence 5444443332222 2345799999999999999999999998654 4556899987432111
Q ss_pred --------------h----HHH-----------------Hh--hh-heeeeccCCccccchHHHHHHHHHHhhcCccccC
Q 025762 200 --------------F----SAL-----------------FS--FL-LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFG 241 (248)
Q Consensus 200 --------------~----~~l-----------------~~--r~-~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (248)
+ +++ .+ +. ..|-|-|++.... ...++..+..+|+-.+.
T Consensus 234 L~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV----~~C~r~el~~rg~~~d~ 309 (344)
T KOG2170|consen 234 LENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHV----RSCIRAELRKRGLAPDQ 309 (344)
T ss_pred HHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHH----HHHHHHHHHhcccccch
Confidence 0 000 01 11 1377888888888 88888777777755544
Q ss_pred c
Q 025762 242 L 242 (248)
Q Consensus 242 ~ 242 (248)
+
T Consensus 310 ~ 310 (344)
T KOG2170|consen 310 D 310 (344)
T ss_pred H
Confidence 3
No 224
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.23 E-value=2.3e-11 Score=109.45 Aligned_cols=184 Identities=23% Similarity=0.259 Sum_probs=137.5
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcC--------------C-CC-eEEEEcCCCCcHHHHHHHHHHHhcCCCcc
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA--------------N-CP-HMLFYGPPGTGKTTTALAIAHQLFGPELY 112 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~--------------~-~~-~ill~Gp~G~GKT~la~~la~~~~~~~~~ 112 (248)
..|..+|+|....++.|.......+..|+... . .. .++++||||+|||+.+..++.++
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~------ 381 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL------ 381 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc------
Confidence 57999999999999999888877888877654 0 11 26999999999999999999999
Q ss_pred ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC--CC--CCCCCCceEEEEeCCCCCCHH---HHHHHHHHHhhcCCc
Q 025762 113 KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RG--GYPCPPYKIIILDEADSMTED---AQNALRRTMETYSKV 185 (248)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~vlilDEi~~l~~~---~~~~L~~~l~~~~~~ 185 (248)
+..+++.+.++.++...+...+..+.....-.... .+ ........||++||+|-+..+ .+..|-.+... ..
T Consensus 382 g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~k--s~ 459 (871)
T KOG1968|consen 382 GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKK--SS 459 (871)
T ss_pred ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHh--cc
Confidence 77999999999888777777666543332221111 00 011123349999999999773 44555555552 23
Q ss_pred eEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 186 TRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
..+|++||+......+++.+.|..++|..|+.+.+ ..++..+|..+++..++..+
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i----~~ri~si~~se~~ki~~~~l 514 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELI----RSRIMSICKSEGIKISDDVL 514 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHH----HhhhhhhhcccceecCcHHH
Confidence 34899999876666467777788999999999999 99999999999999887654
No 225
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.23 E-value=1.9e-10 Score=101.19 Aligned_cols=53 Identities=30% Similarity=0.452 Sum_probs=46.1
Q ss_pred cCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
.++..+++++|+++++..|..++..+. +++|+||||+|||++++++++.+.+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 446789999999999999998887764 89999999999999999999987443
No 226
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.22 E-value=4e-10 Score=96.80 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=100.2
Q ss_pred ccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
.+..++|....++.+...+.. ....+++|+|++||||+++|+++...... ...+++.++|..... ..+...+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~v~v~c~~~~~-~~~~~~lfg 212 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR---KDKRFVAINCAAIPE-NLLESELFG 212 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc---CCCCeEEEECCCCCh-HHHHHHhcC
Confidence 344577777766666555542 34457999999999999999999887522 244678888887532 222222111
Q ss_pred hHhhhhcC--CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------c
Q 025762 137 FAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (248)
Q Consensus 137 ~~~~~~~~--~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~ 196 (248)
........ ....+....++++.|+|||++.++...|..|+++++... ...++|++|+.. .
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 292 (445)
T TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292 (445)
T ss_pred CCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcC
Confidence 11100000 112334455678999999999999999999999998653 145788888753 3
Q ss_pred ccChHHHHhhhhe--eeeccCCc
Q 025762 197 RCTFSALFSFLLF--FMFFSLLD 217 (248)
Q Consensus 197 ~~~~~~l~~r~~~--i~~~~~~~ 217 (248)
.+. +.|..|+.. +.++|+.+
T Consensus 293 ~~~-~~L~~~l~~~~i~lPpLr~ 314 (445)
T TIGR02915 293 TFR-EDLFYRIAEISITIPPLRS 314 (445)
T ss_pred Ccc-HHHHHHhccceecCCCchh
Confidence 455 678888764 66666655
No 227
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.21 E-value=4.5e-11 Score=85.99 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhh
Q 025762 65 HQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (248)
Q Consensus 65 g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (248)
|....++.+.+.+.. ....+|+|+|++||||+++|+++.+.... ....++.+++.... .+.+..
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~~-----~~~l~~------ 67 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASLP-----AELLEQ------ 67 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCTC-----HHHHHH------
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhCc-----HHHHHH------
Confidence 454555555544433 33447999999999999999999987522 12233333443322 111111
Q ss_pred cCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc-CCceEEEEEeCCC-------cccChHHHHhhhhe--eee
Q 025762 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-------SRCTFSALFSFLLF--FMF 212 (248)
Q Consensus 143 ~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~-~~~~~ii~~~n~~-------~~~~~~~l~~r~~~--i~~ 212 (248)
...+.|+|+|++.++.+.+..|...++.. ..+.++|+++... ..+. +.|..++.. +.+
T Consensus 68 -----------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~-~~L~~~l~~~~i~l 135 (138)
T PF14532_consen 68 -----------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFS-PDLYYRLSQLEIHL 135 (138)
T ss_dssp -----------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHH-HHHHHHCSTCEEEE
T ss_pred -----------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchh-HHHHHHhCCCEEeC
Confidence 12369999999999999999999999864 4667888888642 2344 677777653 444
Q ss_pred cc
Q 025762 213 FS 214 (248)
Q Consensus 213 ~~ 214 (248)
+|
T Consensus 136 Pp 137 (138)
T PF14532_consen 136 PP 137 (138)
T ss_dssp --
T ss_pred CC
Confidence 44
No 228
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.1e-10 Score=102.82 Aligned_cols=127 Identities=25% Similarity=0.401 Sum_probs=86.3
Q ss_pred ccccccHHHHHHHHHHHHcCC--------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETAN--------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (248)
+.++||++++..+..++...+ .-.++|.||+|+|||-+|+++|..+++. ...++.++++.... +..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs---e~~~IriDmse~~e---vsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS---EENFIRLDMSEFQE---VSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC---ccceEEechhhhhh---hhh
Confidence 467899999999998886532 2249999999999999999999999554 34667777765322 111
Q ss_pred HHHHhHhh-hh-cCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeC
Q 025762 133 KIKTFAAV-AV-GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICN 193 (248)
Q Consensus 133 ~~~~~~~~-~~-~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n 193 (248)
.+..-... .. ..++....+...++.|+++|||++..++.++.|+++++++. .++.||+|+|
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn 709 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSN 709 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecc
Confidence 10000000 00 00001112334567899999999999999999999999865 5566888876
No 229
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.19 E-value=7.2e-10 Score=79.51 Aligned_cols=99 Identities=27% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH-----------------HHHHHHHHhHhhhhcC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN-----------------VVRTKIKTFAAVAVGS 144 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 144 (248)
+.+++|+||||||||++++.++..+.... ..++.+++....... ...............
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL- 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc-
Confidence 45899999999999999999999985442 134444443321110 011111111100000
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHH--------HHhhcCCceEEEEEeCC
Q 025762 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRR--------TMETYSKVTRFFFICNY 194 (248)
Q Consensus 145 ~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~--------~l~~~~~~~~ii~~~n~ 194 (248)
...++++||++.+.......... ..........+|+++|.
T Consensus 78 ----------~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 ----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ----------CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 13699999999997665554433 23334455668888885
No 230
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.17 E-value=8.1e-10 Score=95.54 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=99.8
Q ss_pred ccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
.+.+++|....+..+.+.+.. .....++|+|++|||||++|+++.+... ....+++.++|..... ..+...+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~---~~~~~~i~i~c~~~~~-~~~~~~lfg 211 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSP---RAKAPFIALNMAAIPK-DLIESELFG 211 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCC---CCCCCeEeeeCCCCCH-HHHHHHhcC
Confidence 345678877766666555432 2345799999999999999999988652 2245788888887632 222221111
Q ss_pred hHhhhh-c-CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------c
Q 025762 137 FAAVAV-G-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (248)
Q Consensus 137 ~~~~~~-~-~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~ 196 (248)
...... + .....+....+..+.|+|||++.++...+..|+++++... ..+++|++|+.. .
T Consensus 212 ~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 000000 0 0112333445667899999999999999999999998653 234788888742 3
Q ss_pred ccChHHHHhhhh--eeeeccCCc
Q 025762 197 RCTFSALFSFLL--FFMFFSLLD 217 (248)
Q Consensus 197 ~~~~~~l~~r~~--~i~~~~~~~ 217 (248)
.+. +.|..|+. .+.++|+.+
T Consensus 292 ~~~-~~L~~~l~~~~i~~PpLre 313 (469)
T PRK10923 292 KFR-EDLFHRLNVIRVHLPPLRE 313 (469)
T ss_pred Cch-HHHHHHhcceeecCCCccc
Confidence 455 78888876 466666655
No 231
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.16 E-value=2.6e-10 Score=89.18 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=88.5
Q ss_pred ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHH--------
Q 025762 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------- 134 (248)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (248)
++|++..++.|.+++..+....++|+||.|+|||++++.+...+..... ..+.+...............
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 4688999999999998887789999999999999999999999833222 11112222221211111110
Q ss_pred -HH-hHhhhhcCCC-----CCCCC-------------CCCCceEEEEeCCCCCC------HHHHHHHHHHHhh--cCCce
Q 025762 135 -KT-FAAVAVGSGQ-----RRGGY-------------PCPPYKIIILDEADSMT------EDAQNALRRTMET--YSKVT 186 (248)
Q Consensus 135 -~~-~~~~~~~~~~-----~~~~~-------------~~~~~~vlilDEi~~l~------~~~~~~L~~~l~~--~~~~~ 186 (248)
.. +......... ..... .....-+++|||++.+. ......|...++. ...+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 00 1100000000 00000 01123799999999987 5666777777776 23445
Q ss_pred EEEEEeCCCcc------cChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhc
Q 025762 187 RFFFICNYISR------CTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 187 ~ii~~~n~~~~------~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
.+|+++..... -. .++..|+..+.+.|++.++. .+.+.......
T Consensus 158 ~~v~~~S~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~e~----~~~~~~~~~~~ 207 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDK-SPLFGRFSHIELKPLSKEEA----REFLKELFKEL 207 (234)
T ss_dssp EEEEEESSHHHHHHTT-TT-STTTT---EEEE----HHHH----HHHHHHHHHCC
T ss_pred eEEEECCchHHHHHhhccc-CccccccceEEEeeCCHHHH----HHHHHHHHHHh
Confidence 55666543211 12 34667888899999999999 77777765444
No 232
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.15 E-value=1.4e-10 Score=99.60 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=91.5
Q ss_pred cccccHHHHHHHHHHHHcCCC------------CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHH
Q 025762 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (248)
.+.|.+++++.|.-.+..+.. -||||+|.||||||.+.+.+++.+. .+.+ ..+ ...+..
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p-Rg~y------TSG-kGsSav- 500 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP-RGVY------TSG-KGSSAV- 500 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC-ccee------ecC-Cccchh-
Confidence 667889999988877766521 2699999999999999999999872 2111 111 000000
Q ss_pred HHHHHHHhHhhhhcCC---CCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEEeC
Q 025762 130 VRTKIKTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~n 193 (248)
-++.......... ...+....+..++++|||+|+|+...++.|+++||... ..++|+.++|
T Consensus 501 ---GLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaAN 577 (804)
T KOG0478|consen 501 ---GLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAAN 577 (804)
T ss_pred ---cceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeec
Confidence 0000000000111 12233445667899999999999999999999998643 4556777777
Q ss_pred CCc-------------ccChHHHHhhhhee--eeccCCc
Q 025762 194 YIS-------------RCTFSALFSFLLFF--MFFSLLD 217 (248)
Q Consensus 194 ~~~-------------~~~~~~l~~r~~~i--~~~~~~~ 217 (248)
+.. .++ ++|+|||..+ -+.++++
T Consensus 578 P~~skynp~k~i~eNI~Lp-ptLLSRFDLIylllD~~DE 615 (804)
T KOG0478|consen 578 PIRSKYNPNKSIIENINLP-PTLLSRFDLIFLLLDKPDE 615 (804)
T ss_pred cccccCCCCCchhhccCCC-hhhhhhhcEEEEEecCcch
Confidence 421 266 9999999954 4454444
No 233
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.2e-10 Score=97.25 Aligned_cols=134 Identities=18% Similarity=0.093 Sum_probs=98.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
.+.+++++||||+|||.++++++++. ...+..++++.... ...++..+..... ..
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~------~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k---~~---------- 277 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEY------GAFLFLINGPELISKFPGETESNLRKAFAEALK---FQ---------- 277 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHh------CceeEecccHHHHHhcccchHHHHHHHHHHHhc---cC----------
Confidence 34569999999999999999999998 45566666654322 2223333332221 11
Q ss_pred CceEEEEeCCCCCCH----------HHHHHHHHHHhhcC--CceEEEEEeCCCcccChHHHHh-hhh-eeeeccCCcccc
Q 025762 155 PYKIIILDEADSMTE----------DAQNALRRTMETYS--KVTRFFFICNYISRCTFSALFS-FLL-FFMFFSLLDQIS 220 (248)
Q Consensus 155 ~~~vlilDEi~~l~~----------~~~~~L~~~l~~~~--~~~~ii~~~n~~~~~~~~~l~~-r~~-~i~~~~~~~~~~ 220 (248)
...+++|||+|.+-+ +....|+.+|+.-. ....++.++|.+..+. +++++ |+. .+.+.-|+.++.
T Consensus 278 ~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld-~alRRgRfd~ev~IgiP~~~~R 356 (693)
T KOG0730|consen 278 VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD-PALRRGRFDREVEIGIPGSDGR 356 (693)
T ss_pred CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC-hhhhcCCCcceeeecCCCchhH
Confidence 035999999998853 45677888888766 4555677789999999 99996 887 599999999999
Q ss_pred chHHHHHHHHHHhhcCcc
Q 025762 221 FDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 221 ~~~~~~~l~~~~~~~~~~ 238 (248)
.++++.++...+..
T Consensus 357 ----ldIl~~l~k~~~~~ 370 (693)
T KOG0730|consen 357 ----LDILRVLTKKMNLL 370 (693)
T ss_pred ----HHHHHHHHHhcCCc
Confidence 89999888887766
No 234
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.13 E-value=1.6e-09 Score=93.50 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=95.5
Q ss_pred ccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhH
Q 025762 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (248)
..++|....+..+...+.. ....++++.|++||||+++|+++...... ...+++.++|...... .+...+....
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~~~-~~~~~lfg~~ 218 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALPES-LLESELFGHE 218 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCCHH-HHHHHhcCCC
Confidence 3466766555555444322 23447999999999999999999886522 2447888888775322 1211111100
Q ss_pred hhhh--cCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------ccc
Q 025762 139 AVAV--GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRC 198 (248)
Q Consensus 139 ~~~~--~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~~ 198 (248)
.... ......+....+..++|+|||++.++...+..|+.+++... ...++|++|+.. ..+
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 0000 00112334445667899999999999999999999998643 235788888743 345
Q ss_pred ChHHHHhhhhe--eeeccCCc
Q 025762 199 TFSALFSFLLF--FMFFSLLD 217 (248)
Q Consensus 199 ~~~~l~~r~~~--i~~~~~~~ 217 (248)
. +.+..|+.. +.++|+.+
T Consensus 299 ~-~~l~~~l~~~~i~~ppLre 318 (457)
T PRK11361 299 R-EDLFYRLNVIHLILPPLRD 318 (457)
T ss_pred h-HHHHHHhccceecCCChhh
Confidence 5 677777664 55556653
No 235
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.9e-10 Score=96.81 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEE
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 160 (248)
+..+++|.||+|+|||.|+++++..+.........++.+...+......++..+........... ..|++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~----------PSiIv 499 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYA----------PSIIV 499 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhC----------CcEEE
Confidence 44589999999999999999999999644444344444444444445555555555444333322 25999
Q ss_pred EeCCCCCCH--------------HHHHHHHHHHhhcC---CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCcccc
Q 025762 161 LDEADSMTE--------------DAQNALRRTMETYS---KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQIS 220 (248)
Q Consensus 161 lDEi~~l~~--------------~~~~~L~~~l~~~~---~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~ 220 (248)
|||+|.+-. ....+|.+++..+. ....+|.+++....+. +.|.+ +|+ ++.+++|...+.
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~-~~L~s~~~Fq~~~~L~ap~~~~R 578 (952)
T KOG0735|consen 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN-PLLVSPLLFQIVIALPAPAVTRR 578 (952)
T ss_pred EcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC-hhhcCccceEEEEecCCcchhHH
Confidence 999998731 12233434444333 2334677778777777 77766 355 589999999999
Q ss_pred chHHHHHHHHHHhhcC
Q 025762 221 FDKEYIRIIYASTLKF 236 (248)
Q Consensus 221 ~~~~~~~l~~~~~~~~ 236 (248)
-++|..++.+..
T Consensus 579 ----~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 579 ----KEILTTIFSKNL 590 (952)
T ss_pred ----HHHHHHHHHhhh
Confidence 888888877765
No 236
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.10 E-value=6.3e-10 Score=96.05 Aligned_cols=169 Identities=20% Similarity=0.151 Sum_probs=108.8
Q ss_pred ccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHhc----CCCccccceEEeccCCCcchHHHHHH
Q 025762 63 VAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLF----GPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 63 ~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
+.+++.....|...+.. +.+..++|+|-||||||.++..+...+. ........++++++........+...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 34566666666555543 2344699999999999999999999774 22344567888988877665555444
Q ss_pred HHHhH-hhhhcCCC--------CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCC---ceEEEEEeCCC---ccc
Q 025762 134 IKTFA-AVAVGSGQ--------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK---VTRFFFICNYI---SRC 198 (248)
Q Consensus 134 ~~~~~-~~~~~~~~--------~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~---~~~ii~~~n~~---~~~ 198 (248)
+.... .....+.. ...........|++|||.|.|-...|..|++++++... ...+|.++|.. .++
T Consensus 478 I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred HHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHH
Confidence 43321 11111100 01122334457999999999988889999999998652 23356666643 333
Q ss_pred ChHHHHhhhh--eeeeccCCccccchHHHHHHHHH
Q 025762 199 TFSALFSFLL--FFMFFSLLDQISFDKEYIRIIYA 231 (248)
Q Consensus 199 ~~~~l~~r~~--~i~~~~~~~~~~~~~~~~~l~~~ 231 (248)
.+..+-||.. .+.|+|++.+++..++..+|+..
T Consensus 558 l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 558 LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred hccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 3245556644 69999999999966666655544
No 237
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.10 E-value=1.8e-10 Score=100.90 Aligned_cols=141 Identities=19% Similarity=0.191 Sum_probs=93.2
Q ss_pred cccccccHHHHHHHHHHHHcCCC------------CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEE-eccCCCcc
Q 025762 60 VKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE-LNASDDRG 126 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~-~~~~~~~~ 126 (248)
...+.|++.++++|.-.+.++-. -|+||.|.||||||.+.+.+++.+ ...++. ..++...+
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a------Pr~vytsgkgss~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA------PRGVYTSGKGSSAAG 358 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC------CceEEEccccccccC
Confidence 44678999999999888876521 269999999999999999999987 111111 11111111
Q ss_pred hHHHHHHHHHhHhhhh--cCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEE
Q 025762 127 INVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFI 191 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~ 191 (248)
.. ........ .+....|....+.++|++|||+|+|+.....+|+++||... ..+.++.+
T Consensus 359 LT------Aav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAA 432 (682)
T COG1241 359 LT------AAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAA 432 (682)
T ss_pred ce------eEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhh
Confidence 00 00000001 12234555667788999999999999999999999999754 23335556
Q ss_pred eCCCc-------------ccChHHHHhhhheeeec
Q 025762 192 CNYIS-------------RCTFSALFSFLLFFMFF 213 (248)
Q Consensus 192 ~n~~~-------------~~~~~~l~~r~~~i~~~ 213 (248)
+|+.. .++ ++|+|||+.+.+-
T Consensus 433 aNP~~Gryd~~~~~~enI~l~-~~lLSRFDLifvl 466 (682)
T COG1241 433 ANPKFGRYDPKKTVAENINLP-APLLSRFDLIFVL 466 (682)
T ss_pred hCCCCCcCCCCCCHHHhcCCC-hhHHhhCCeeEEe
Confidence 66543 256 8899999965443
No 238
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.08 E-value=5.8e-09 Score=81.04 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC
Q 025762 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147 (248)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (248)
.....+..++.... .-.+.||+|||||.+++.+++.+ +..++.+++.+......+...+..+...
T Consensus 20 r~~~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~~~l~ril~G~~~~------- 84 (231)
T PF12774_consen 20 RCFLTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDYQSLSRILKGLAQS------- 84 (231)
T ss_dssp HHHHHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-HHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccHHHHHHHHHHHhhc-------
Confidence 33445555554433 57789999999999999999999 7789999999998888888877766553
Q ss_pred CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------cC-------------CceEEEEEeCC----CcccChHHH
Q 025762 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-------YS-------------KVTRFFFICNY----ISRCTFSAL 203 (248)
Q Consensus 148 ~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~-------~~-------------~~~~ii~~~n~----~~~~~~~~l 203 (248)
+..+++||+++++.+....+.+.+.. .. +...+.+|.|+ ...++ +.+
T Consensus 85 --------GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP-~nL 155 (231)
T PF12774_consen 85 --------GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELP-ENL 155 (231)
T ss_dssp --------T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S--HHH
T ss_pred --------CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCC-HhH
Confidence 24799999999998877776554432 11 23446666664 35677 888
Q ss_pred HhhhheeeeccCCcccc
Q 025762 204 FSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 204 ~~r~~~i~~~~~~~~~~ 220 (248)
+.-+..+.+..|+...+
T Consensus 156 k~lFRpvam~~PD~~~I 172 (231)
T PF12774_consen 156 KALFRPVAMMVPDLSLI 172 (231)
T ss_dssp CTTEEEEE--S--HHHH
T ss_pred HHHhheeEEeCCCHHHH
Confidence 88888898888887666
No 239
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=7.4e-10 Score=91.60 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=108.8
Q ss_pred ccccccHHHHHHHHHHHHcC----CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-cchHHHHHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-RGINVVRTKIK 135 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 135 (248)
..++|.+.....+..++..+ ...++++.|-||+|||.+...+...+.+.. .....+.+++... .....+.....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHHHHHH
Confidence 45678888887777776543 555799999999999999998888874332 2334566777653 33344444444
Q ss_pred HhHhhhhcCCCC--------CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-CceEE--EEEeCCC---cccChH
Q 025762 136 TFAAVAVGSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-KVTRF--FFICNYI---SRCTFS 201 (248)
Q Consensus 136 ~~~~~~~~~~~~--------~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-~~~~i--i~~~n~~---~~~~~~ 201 (248)
.+.....+.+.. .........-|+|+||+|.+....+..|+.+++... ...++ |.++|.. +++. +
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L-p 307 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL-P 307 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh-h
Confidence 442222221110 000011234589999999998888888888887654 23334 4444643 4444 6
Q ss_pred HHHhhhh----eeeeccCCccccchHHHHHHHHHHhhcC
Q 025762 202 ALFSFLL----FFMFFSLLDQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 202 ~l~~r~~----~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (248)
.|..|+. .+.|+||+.+++ ..+++..+..+.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI----~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQI----VEILQQRLSEES 342 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHH----HHHHHHHHhccc
Confidence 6666543 599999999999 777776665554
No 240
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.6e-09 Score=97.99 Aligned_cols=151 Identities=21% Similarity=0.116 Sum_probs=96.4
Q ss_pred ccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
.|+++-|.+.++..|.+.+... ....++++||||||||..|++++..+... .....+..-...+..
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~-~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRG-NRKISFFMRKGADCL 341 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccc-ccccchhhhcCchhh
Confidence 5778888888888887776431 34459999999999999999999987322 212222222222221
Q ss_pred c------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcCCce--
Q 025762 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSKVT-- 186 (248)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~~~~-- 186 (248)
+ ...++.+...... ....++++||||.+. ......|+.+|+.....+
T Consensus 342 skwvgEaERqlrllFeeA~k--------------~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqV 407 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQK--------------TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQV 407 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhc--------------cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCce
Confidence 1 1122222222111 123599999999663 235567888888766444
Q ss_pred EEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHH
Q 025762 187 RFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 187 ~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~ 229 (248)
++|-+||.+..+. ++++. ||. .+.|.-++.+.. ..++.
T Consensus 408 vvigATnRpda~d-paLRRPgrfdref~f~lp~~~ar----~~Il~ 448 (1080)
T KOG0732|consen 408 VVIGATNRPDAID-PALRRPGRFDREFYFPLPDVDAR----AKILD 448 (1080)
T ss_pred EEEcccCCccccc-hhhcCCcccceeEeeeCCchHHH----HHHHH
Confidence 4566679999999 99976 566 477777777666 55554
No 241
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=99.05 E-value=5.1e-09 Score=86.79 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=64.3
Q ss_pred cHHHHHHHHHH-HHcCCCCeEEEEcCCCCcHHHHHHHHHHH-hcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhc
Q 025762 66 QEEVVRVLTNT-LETANCPHMLFYGPPGTGKTTTALAIAHQ-LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143 (248)
Q Consensus 66 ~~~~~~~l~~~-l~~~~~~~ill~Gp~G~GKT~la~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (248)
.+..+..|.++ -+..+..|+++.||+||||||++.+++.. +...+ ...+ ...++..+......
T Consensus 192 ~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG------------~f~T---~a~Lf~~L~~~~lg 256 (449)
T TIGR02688 192 ARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG------------GTIT---VAKLFYNISTRQIG 256 (449)
T ss_pred hHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC------------CcCc---HHHHHHHHHHHHHh
Confidence 34555556555 34456669999999999999999999988 32121 1111 11122222211111
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHhhcC---------CceEEEEEeCC
Q 025762 144 SGQRRGGYPCPPYKIIILDEADSMT----EDAQNALRRTMETYS---------KVTRFFFICNY 194 (248)
Q Consensus 144 ~~~~~~~~~~~~~~vlilDEi~~l~----~~~~~~L~~~l~~~~---------~~~~ii~~~n~ 194 (248)
.....++|+|||+..++ .+..+.|...|+.+. ..+++|+.+|-
T Consensus 257 --------~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi 312 (449)
T TIGR02688 257 --------LVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNV 312 (449)
T ss_pred --------hhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEccc
Confidence 12346899999999975 335566777776543 34568888874
No 242
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.04 E-value=1.1e-09 Score=88.66 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc-chHHHHHHHHHhHhhhhc
Q 025762 67 EEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GINVVRTKIKTFAAVAVG 143 (248)
Q Consensus 67 ~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 143 (248)
+..+++|...+.. .....+.|+|++|+|||+||..+++.......++. ++.++..... ...........+......
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5567788888877 45567999999999999999999988321222222 2333333222 222233333332222111
Q ss_pred C-CCC--------CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeecc
Q 025762 144 S-GQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFS 214 (248)
Q Consensus 144 ~-~~~--------~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~ 214 (248)
. ... .......++.+||+||++... ..+.+...+.....++++|+||....-. .........+.+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~--~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVA--GSLGGTDKVIELEP 156 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGG--TTHHSCEEEEECSS
T ss_pred cccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccc--cccccccccccccc
Confidence 0 000 000012346899999988653 4444555555555567888888764322 22222255799999
Q ss_pred CCccccchHHHHHHHHHHhhcC
Q 025762 215 LLDQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~ 236 (248)
++.++. ...+...+....
T Consensus 157 L~~~ea----~~L~~~~~~~~~ 174 (287)
T PF00931_consen 157 LSEEEA----LELFKKRAGRKE 174 (287)
T ss_dssp --HHHH----HHHHHHHHTSHS
T ss_pred cccccc----cccccccccccc
Confidence 999999 777777755443
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=1.8e-09 Score=86.12 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEE
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlil 161 (248)
+.+++|+||+|||||.+++.+.+.+... ......+..+.......++..+....... .+... +...+++-|++|
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~~~q~~ie~~l~k~--~~~~~-gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSNQLQKIIESKLEKR--RGRVY-GPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHHHHHHCCCTTECEC--TTEEE-EEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHHHHHHHHhhcEEcC--CCCCC-CCCCCcEEEEEe
Confidence 4489999999999999999988765221 11233444444433333333222111000 00000 012345569999
Q ss_pred eCCCCCCHH------HHHHHHHHHhhcC------------CceEEEEEeCCCc---ccChHHHHhhhheeeeccCCcccc
Q 025762 162 DEADSMTED------AQNALRRTMETYS------------KVTRFFFICNYIS---RCTFSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 162 DEi~~l~~~------~~~~L~~~l~~~~------------~~~~ii~~~n~~~---~~~~~~l~~r~~~i~~~~~~~~~~ 220 (248)
||++.-.++ ..+.|.++++... ....+|.++++.. .+. +.+.+.+.++.+.+|+.+.+
T Consensus 107 DDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is-~R~~r~f~i~~~~~p~~~sl 185 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPIS-PRFLRHFNILNIPYPSDESL 185 (272)
T ss_dssp ETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHH-HHHHTTEEEEE----TCCHH
T ss_pred cccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCC-hHHhhheEEEEecCCChHHH
Confidence 998876432 4566666665421 2344666666532 355 77888888999999999999
Q ss_pred chHHHHHHHHHHhhcC
Q 025762 221 FDKEYIRIIYASTLKF 236 (248)
Q Consensus 221 ~~~~~~~l~~~~~~~~ 236 (248)
..++..++.......+
T Consensus 186 ~~If~~il~~~l~~~~ 201 (272)
T PF12775_consen 186 NTIFSSILQSHLKNGG 201 (272)
T ss_dssp HHHHHHHHHHHTCHTT
T ss_pred HHHHHHHHhhhcccCC
Confidence 5555555554444333
No 244
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.04 E-value=5.8e-09 Score=83.76 Aligned_cols=173 Identities=15% Similarity=0.066 Sum_probs=112.7
Q ss_pred CccccccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
..|+.+++....++.+......- --..++|+|.+||||-.+|+++.... .....+++.++|........-.+.+.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S---~R~~~pFlalNCA~lPe~~aEsElFG 277 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLAS---PRHSKPFLALNCASLPEDAAESELFG 277 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcC---cccCCCeeEeecCCCchhHhHHHHhc
Confidence 46777888776666554433221 11259999999999999999987653 33366888899987644333222222
Q ss_pred HhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCC-------Ccc
Q 025762 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY-------ISR 197 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~-------~~~ 197 (248)
. ..+..-..+....++++-+++|||..|++..|..|++++.++. -..++|++|.. ...
T Consensus 278 ~----apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~ 353 (511)
T COG3283 278 H----APGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGK 353 (511)
T ss_pred C----CCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCc
Confidence 1 1122224556677888999999999999999999999998754 34568888852 344
Q ss_pred cChHHHHhhhheeeeccCCccccchH----HHHHHHHHHhhcCcc
Q 025762 198 CTFSALFSFLLFFMFFSLLDQISFDK----EYIRIIYASTLKFLE 238 (248)
Q Consensus 198 ~~~~~l~~r~~~i~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 238 (248)
+- +.+..|..++.++-|+-.|..+. ..-.++.++.+-++.
T Consensus 354 fR-eDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p 397 (511)
T COG3283 354 FR-EDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVP 397 (511)
T ss_pred hH-HHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCC
Confidence 55 77888877755555544333222 233445556666654
No 245
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.04 E-value=5.8e-09 Score=82.86 Aligned_cols=161 Identities=13% Similarity=0.077 Sum_probs=91.8
Q ss_pred ccccccccHHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHHhcCC---CccccceEEeccCCCcchHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRGINVVRT 132 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 132 (248)
.|-.+..-..+.+.|...+... +.++++|+|++|.|||++++.+.+..... .....+++.+......+...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 3433333455556666666543 67789999999999999999999876211 11233566666655444443333
Q ss_pred HHHHhHhhhhcCCCCCCC--------CCCCCceEEEEeCCCCC---CHHHHHHHHHHHhhcCC--ceEEEEEeCC----C
Q 025762 133 KIKTFAAVAVGSGQRRGG--------YPCPPYKIIILDEADSM---TEDAQNALRRTMETYSK--VTRFFFICNY----I 195 (248)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--------~~~~~~~vlilDEi~~l---~~~~~~~L~~~l~~~~~--~~~ii~~~n~----~ 195 (248)
.+................ ...-+-++|||||+|.+ +...+..+++++..... ...+|+++.. .
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA 194 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH
Confidence 333222222211111000 01123469999999986 33344444444443332 2336666642 2
Q ss_pred cccChHHHHhhhheeeeccCCcccc
Q 025762 196 SRCTFSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 196 ~~~~~~~l~~r~~~i~~~~~~~~~~ 220 (248)
-.-+ +.+.+||..+.+++-..++-
T Consensus 195 l~~D-~QLa~RF~~~~Lp~W~~d~e 218 (302)
T PF05621_consen 195 LRTD-PQLASRFEPFELPRWELDEE 218 (302)
T ss_pred hccC-HHHHhccCCccCCCCCCCcH
Confidence 3344 88999999988887777654
No 246
>PRK15115 response regulator GlrR; Provisional
Probab=99.03 E-value=8.5e-09 Score=88.62 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=92.5
Q ss_pred cccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHh
Q 025762 62 DVAHQEEVVRVLTNTLE--TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~--~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (248)
.++|....+..+..... .....+++|+|++|||||++|+++.+.... ...+++.++|..... ..+...+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r---~~~~f~~i~c~~~~~-~~~~~~lfg~~~ 210 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR---ASKPFIAINCGALPE-QLLESELFGHAR 210 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC---CCCCeEEEeCCCCCH-HHHHHHhcCCCc
Confidence 34565554444433322 223457999999999999999999987522 245788888887532 222221111000
Q ss_pred hhhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------cccC
Q 025762 140 VAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRCT 199 (248)
Q Consensus 140 ~~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~~~ 199 (248)
.... .....+....+..+.|||||++.++...|..|+.+++... ...++|++|+.. ..+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 211 GAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred CCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 0000 0112233445567899999999999999999999998653 145788888642 2344
Q ss_pred hHHHHhhhh--eeeeccCCc
Q 025762 200 FSALFSFLL--FFMFFSLLD 217 (248)
Q Consensus 200 ~~~l~~r~~--~i~~~~~~~ 217 (248)
+.+..|+. .+.++|+.+
T Consensus 291 -~~l~~~l~~~~i~lPpLr~ 309 (444)
T PRK15115 291 -EDLYYRLNVVSLKIPALAE 309 (444)
T ss_pred -HHHHHhhceeeecCCChHh
Confidence 56666665 355666655
No 247
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.6e-10 Score=92.53 Aligned_cols=88 Identities=27% Similarity=0.305 Sum_probs=61.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc----hHHHHHHHHHhHhhhhcCCCCCCCCCCCCce
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (248)
..|||+.||+|+|||.||+.||+.+ ++++...+|....- ...+...+..+..... ..+..++.+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~------~nVekAQqG 293 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAE------YNVEKAQQG 293 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchhhcccccccHHHHHHHHHHHcc------CCHHHHhcC
Confidence 3479999999999999999999999 77777777754321 1223333333322211 112334568
Q ss_pred EEEEeCCCCCC--------------HHHHHHHHHHHhh
Q 025762 158 IIILDEADSMT--------------EDAQNALRRTMET 181 (248)
Q Consensus 158 vlilDEi~~l~--------------~~~~~~L~~~l~~ 181 (248)
+++|||+|++. ..+|.+|++++|.
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcc
Confidence 99999999984 4589999999974
No 248
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.03 E-value=9.5e-11 Score=83.45 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCcc--ccceEEeccCCCcchHH-HHHHHHHhHhhhhcCCCC-------CCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELY--KSRVLELNASDDRGINV-VRTKIKTFAAVAVGSGQR-------RGGY 151 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~ 151 (248)
...++++||+|+|||+++..+++.+...... ...++.+++........ .......+.......... ....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3479999999999999999999987311000 23444454443332222 222222221111110000 0000
Q ss_pred CCCCceEEEEeCCCCC-CHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 152 PCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 152 ~~~~~~vlilDEi~~l-~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
......+|+|||+|.+ +....+.|..+++ .....+|+++++
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 0111259999999999 9888888888777 556678888875
No 249
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=2e-09 Score=79.67 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=78.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccc---cceEEeccCCCcchH---HHHHHHHHhHhhhhcCCCC--CCCCCCCC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYK---SRVLELNASDDRGIN---VVRTKIKTFAAVAVGSGQR--RGGYPCPP 155 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (248)
-++|+|++|+|||++++.++..+....... ...+.+...+..... .+.+.+............. ........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999999885443222 112222222221111 1222222111110000000 00111234
Q ss_pred ceEEEEeCCCCCCHHH--------HHHHHHHHhh-cCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHH
Q 025762 156 YKIIILDEADSMTEDA--------QNALRRTMET-YSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYI 226 (248)
Q Consensus 156 ~~vlilDEi~~l~~~~--------~~~L~~~l~~-~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~ 226 (248)
.-+++||.+|.+.... ...|..++.. .....++++++.+...............+.+.+++.+++ ..
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~ 157 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI----KQ 157 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH----HH
Confidence 5689999999886532 2345556655 355677888886433211022222235689999999999 77
Q ss_pred HHHHHHh
Q 025762 227 RIIYAST 233 (248)
Q Consensus 227 ~l~~~~~ 233 (248)
.++....
T Consensus 158 ~~~~~f~ 164 (166)
T PF05729_consen 158 YLRKYFS 164 (166)
T ss_pred HHHHHhh
Confidence 7766543
No 250
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.2e-10 Score=93.73 Aligned_cols=130 Identities=25% Similarity=0.217 Sum_probs=81.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEE-eccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEe
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE-LNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilD 162 (248)
.++|+||||||||.+|+.++..+.........--+ ++..-+.+...+++++......--..+ . ...-+++|+|
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g----~--~SgLHIIIFD 331 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLG----A--NSGLHIIIFD 331 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhC----c--cCCceEEEeh
Confidence 59999999999999999999998543322111000 111223344556666655443322211 1 1123699999
Q ss_pred CCCCC-------------CHHHHHHHHHHHhhcC--CceEEEEEeCCCcccChHHHHh--hhhe-eeeccCCcccc
Q 025762 163 EADSM-------------TEDAQNALRRTMETYS--KVTRFFFICNYISRCTFSALFS--FLLF-FMFFSLLDQIS 220 (248)
Q Consensus 163 Ei~~l-------------~~~~~~~L~~~l~~~~--~~~~ii~~~n~~~~~~~~~l~~--r~~~-i~~~~~~~~~~ 220 (248)
|+|.+ ...+.+.|+.-|+.-. .+..+|--||..+.++ ++|++ |+.+ +++.-|++.-.
T Consensus 332 EiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlID-EALLRPGRlEVqmEIsLPDE~gR 406 (744)
T KOG0741|consen 332 EIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLID-EALLRPGRLEVQMEISLPDEKGR 406 (744)
T ss_pred hhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHH-HHhcCCCceEEEEEEeCCCccCc
Confidence 99976 3557888888887544 3444666679989898 99987 5653 55655555433
No 251
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.00 E-value=1.8e-08 Score=72.01 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
.+.++|+||+||||++..++..+...
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 69999999999999999999988544
No 252
>PHA00729 NTP-binding motif containing protein
Probab=99.00 E-value=3.2e-09 Score=81.36 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=28.9
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 72 ~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+...+......+++|+|+|||||||+|.++++.+
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445555566689999999999999999999987
No 253
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=4.1e-09 Score=78.43 Aligned_cols=103 Identities=17% Similarity=0.032 Sum_probs=81.6
Q ss_pred cCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccCh
Q 025762 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTF 200 (248)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~ 200 (248)
..+....+.++............ +.++|++++.+....+|+|++.+|+.+.++.|+++|+.+..++
T Consensus 33 ~~~~i~Vd~iReii~~~~~~~~~-------------~k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~ll- 98 (206)
T PRK08485 33 IKEEFKIEDAKEVIAEAYIAESE-------------EKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLL- 98 (206)
T ss_pred CCCCCCHHHHHHHHHHHhhCCCC-------------cEEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc-
Confidence 34456667777776665443211 2356889999999999999999999999999999999999999
Q ss_pred HHHHhhhhe-------------eeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 201 SALFSFLLF-------------FMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 201 ~~l~~r~~~-------------i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
++++|||.. +.|.+++.+++ .+.++. ..++++...+.
T Consensus 99 pTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i----~~~L~~-~~ke~~~~~~e 148 (206)
T PRK08485 99 PTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDI----YEFLKE-LEKENKLSKEE 148 (206)
T ss_pred hHHHhhheeccccccccccccccccCCCCHHHH----HHHHHH-HHHcccccHHH
Confidence 999999985 77899999999 888887 56666655444
No 254
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.97 E-value=1.6e-08 Score=87.43 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=104.3
Q ss_pred cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHh
Q 025762 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (248)
.++|.......+...+.. .....+++.|.+||||+++|+++...... ...+++.++|..... ..+...+.....
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~---~~~~~~~~~c~~~~~-~~~~~~lfg~~~ 210 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR---ANGPFIALNMAAIPK-DLIESELFGHEK 210 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC---CCCCeEEEeCCCCCH-HHHHHHhcCCCC
Confidence 466766666555544432 23446999999999999999999886521 245788888877632 222222111000
Q ss_pred hhhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------cccC
Q 025762 140 VAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRCT 199 (248)
Q Consensus 140 ~~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~~~ 199 (248)
.... .....+....+..+.|+|||++.++...+..|++++++.. ..+++|++|+.. ..+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 211 GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred CCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 0000 0111233445567899999999999999999999998643 145688888743 2444
Q ss_pred hHHHHhhhh--eeeeccCC--ccccchHHHHHHHHHHhh
Q 025762 200 FSALFSFLL--FFMFFSLL--DQISFDKEYIRIIYASTL 234 (248)
Q Consensus 200 ~~~l~~r~~--~i~~~~~~--~~~~~~~~~~~l~~~~~~ 234 (248)
+.|..|+. .+.++|+. .+++...+..++...+..
T Consensus 291 -~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~ 328 (463)
T TIGR01818 291 -EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARE 328 (463)
T ss_pred -HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHH
Confidence 68888865 57778877 456733333444444443
No 255
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.97 E-value=6.4e-09 Score=90.96 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhh-hhc
Q 025762 66 QEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVG 143 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~-~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 143 (248)
++.++..|.-+.-.. ....|+|.|+.|+|||+++++++..+-. ..+++.+..+ .+...+-.-+ .+... ..+
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~--~t~~~L~Gg~-Dl~~~l~~g 80 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPG--IADDRLLGGL-DLAATLRAG 80 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCC--CcHHHccCCc-hHHhHhhcC
Confidence 455555554333334 4557999999999999999999998722 1122222221 1111111000 00111 111
Q ss_pred C-CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCc-----------eEEEEEeCC-----CcccChHHHHhh
Q 025762 144 S-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV-----------TRFFFICNY-----ISRCTFSALFSF 206 (248)
Q Consensus 144 ~-~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~-----------~~ii~~~n~-----~~~~~~~~l~~r 206 (248)
. ...++....++++||||||+..+++.+++.|++.|+++.-. ..|++++.. ...++ +++++|
T Consensus 81 ~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~-~~lLDR 159 (584)
T PRK13406 81 RPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAP-AALADR 159 (584)
T ss_pred CcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCC-HHhHhh
Confidence 1 25678888889999999999999999999999999986411 224444422 24478 999999
Q ss_pred hh-eeeeccCCcccc
Q 025762 207 LL-FFMFFSLLDQIS 220 (248)
Q Consensus 207 ~~-~i~~~~~~~~~~ 220 (248)
|. .+.+.+++..+.
T Consensus 160 f~l~v~v~~~~~~~~ 174 (584)
T PRK13406 160 LAFHLDLDGLALRDA 174 (584)
T ss_pred eEEEEEcCCCChHHh
Confidence 98 588887775543
No 256
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.7e-09 Score=83.63 Aligned_cols=49 Identities=27% Similarity=0.357 Sum_probs=39.9
Q ss_pred cccccHHHHHHHHHHHHcC--------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 025762 62 DVAHQEEVVRVLTNTLETA--------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~--------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~ 110 (248)
.++||+++++.+.-++++. -+.|+|+.||+|+|||-+|+.+|+.+..++
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPF 78 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPF 78 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4789999998887666532 356899999999999999999999984443
No 257
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.91 E-value=2.8e-09 Score=78.91 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=37.8
Q ss_pred CceEEEEeCCCCC---CHHHHHHHHHHHhhcCCceEEEEEeCC--CcccChHHHHhh--hheeeeccCCcccc
Q 025762 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNY--ISRCTFSALFSF--LLFFMFFSLLDQIS 220 (248)
Q Consensus 155 ~~~vlilDEi~~l---~~~~~~~L~~~l~~~~~~~~ii~~~n~--~~~~~~~~l~~r--~~~i~~~~~~~~~~ 220 (248)
..++++|||++.| .+...+++..+++. ...+|.+-.. ...+. +.+.+| +.++.+.+-+.+.+
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s---~~~vi~vv~~~~~~~~l-~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS---NKPVIGVVHKRSDNPFL-EEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT---TSEEEEE--SS--SCCH-HHHHTTTTSEEEE--TTTCCCH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC---CCcEEEEEecCCCcHHH-HHHHhCCCcEEEEeChhHHhhH
Confidence 4579999999887 56778888888883 2224444432 34455 888888 66788888888877
No 258
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.90 E-value=2.5e-09 Score=91.20 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=93.0
Q ss_pred cccccHHHHHHHHHHHHcCCCC------------eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHH
Q 025762 62 DVAHQEEVVRVLTNTLETANCP------------HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~------------~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (248)
.+.|+..++.++.-++..+..+ |+||+|.||||||-..+.+++.. ...++ ..+.......
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s------~RAV~-tTGqGASavG- 521 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS------PRAVF-TTGQGASAVG- 521 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC------cceeE-eccCCccccc-
Confidence 5679999999998888775222 59999999999999999999876 22222 1111111100
Q ss_pred HHHHHHHhHhh--hhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEEeCC
Q 025762 130 VRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNY 194 (248)
Q Consensus 130 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~n~ 194 (248)
+....... ...|....|....+.++|++|||+|+|.......+.+.||... ..+.+|.++|+
T Consensus 522 ---LTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 522 ---LTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred ---eeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 00000000 1112333455667888999999999999999999999998654 44557888875
Q ss_pred C-------------cccChHHHHhhhheeeec
Q 025762 195 I-------------SRCTFSALFSFLLFFMFF 213 (248)
Q Consensus 195 ~-------------~~~~~~~l~~r~~~i~~~ 213 (248)
. -.+. ++++|||.+++.-
T Consensus 599 igGRY~~s~tFaqNV~lt-ePIlSRFDiLcVv 629 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLT-EPILSRFDILCVV 629 (854)
T ss_pred CCCccCCccchhhccccc-cchhhhcceeeee
Confidence 2 1344 8899999976643
No 259
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.89 E-value=6.1e-11 Score=97.37 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=75.1
Q ss_pred cccccHHHHHHHHHHHHcCC------------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHH
Q 025762 62 DVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~------------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (248)
.+.|.+.++..+.-.+.++. .-|+||+|.||+|||.|.+.+++.. ... +...........
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~------pr~-v~~~g~~~s~~g- 96 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA------PRS-VYTSGKGSSAAG- 96 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-------SSE-EEEECCGSTCCC-
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC------Cce-EEECCCCcccCC-
Confidence 56788888887765554431 2279999999999999999886654 111 111111100000
Q ss_pred HHHHHHHhHh--hhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEEeCC
Q 025762 130 VRTKIKTFAA--VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNY 194 (248)
Q Consensus 130 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~n~ 194 (248)
+...... ....+....|....++++|++|||+|.+..+....|+++||... ..+.++.++|+
T Consensus 97 ---Lta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 97 ---LTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp ---CCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ---ccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 0000000 00111112233344567899999999999999999999999753 34457888885
Q ss_pred Cc-------------ccChHHHHhhhhee
Q 025762 195 IS-------------RCTFSALFSFLLFF 210 (248)
Q Consensus 195 ~~-------------~~~~~~l~~r~~~i 210 (248)
.. .++ ++|++||+.+
T Consensus 174 ~~g~~~~~~~~~~ni~l~-~~LLSRFDLi 201 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLP-PPLLSRFDLI 201 (331)
T ss_dssp TT--S-TTS-CGCCT-S--CCCHCC-SEE
T ss_pred hhhhcchhhhhHHhcccc-hhhHhhcCEE
Confidence 43 355 7999999954
No 260
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.88 E-value=7.8e-09 Score=81.16 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=77.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCC-CCCCCCCCCCceEEEE
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIIL 161 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlil 161 (248)
..+++.||+|.|||+||+.+...-......+..+++++|...++...+..+.........+.. .+.+....+..++|++
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 359999999999999999987665444455778999999988887777666655433322222 2445566778899999
Q ss_pred eCCCCCCHHHHHHHHHHHhhc
Q 025762 162 DEADSMTEDAQNALRRTMETY 182 (248)
Q Consensus 162 DEi~~l~~~~~~~L~~~l~~~ 182 (248)
||++.+..+-+..|++.+++.
T Consensus 289 deigelgadeqamllkaieek 309 (531)
T COG4650 289 DEIGELGADEQAMLLKAIEEK 309 (531)
T ss_pred HhhhhcCccHHHHHHHHHHhh
Confidence 999999999999999999864
No 261
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.85 E-value=6.7e-09 Score=78.33 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=32.6
Q ss_pred ccccHHHHHHHHHHHH---cCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 63 VAHQEEVVRVLTNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 63 ~~g~~~~~~~l~~~l~---~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
++|+++.++.+...+. ...+++++|+|++|+|||++++++...+..
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999883 234567999999999999999999888743
No 262
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.84 E-value=1.1e-07 Score=81.57 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=92.5
Q ss_pred ccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhh
Q 025762 63 VAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (248)
Q Consensus 63 ~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (248)
++|.......+...+.. .....++++|.+|+||+++|+++...... ...+++.++|..... ..+...+......
T Consensus 141 lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~---~~~~~i~~~c~~~~~-~~~~~~lfg~~~~ 216 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR---SEKPLVTLNCAALNE-SLLESELFGHEKG 216 (441)
T ss_pred eEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC---CCCCeeeeeCCCCCH-HHHHHHhcCCCCC
Confidence 45555544444333322 23457999999999999999999886522 245788888886532 2222222111110
Q ss_pred hhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------cccCh
Q 025762 141 AVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRCTF 200 (248)
Q Consensus 141 ~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~~~~ 200 (248)
... .....+....+..+.|+|||++.+++..+..|+..++... ...++|++|+.. ..+.
T Consensus 217 ~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~- 295 (441)
T PRK10365 217 AFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFR- 295 (441)
T ss_pred CcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCch-
Confidence 000 0112333455678899999999999999999999998753 134677777642 3344
Q ss_pred HHHHhhhhe--eeeccCCc
Q 025762 201 SALFSFLLF--FMFFSLLD 217 (248)
Q Consensus 201 ~~l~~r~~~--i~~~~~~~ 217 (248)
+.|..|+.. +.++|+.+
T Consensus 296 ~~l~~~l~~~~i~~ppLre 314 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQ 314 (441)
T ss_pred HHHHHHhccceecCCChhh
Confidence 667777664 45555554
No 263
>PRK10536 hypothetical protein; Provisional
Probab=98.83 E-value=6.5e-08 Score=75.50 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=36.8
Q ss_pred CccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++..+.+.......+..++... ..++++||+|||||++|.+++...
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 44555666666666777777654 489999999999999999999965
No 264
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.83 E-value=8e-09 Score=88.39 Aligned_cols=160 Identities=16% Similarity=0.113 Sum_probs=96.7
Q ss_pred ccccccccHHHHHHHHHHHHcC------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
-+..+.|++.++..|.-.+..+ +-.||+|+|.||+|||-+.++.+..+ +..++.. +. ..+
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs------PR~vYts-Gk-aSS 414 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS------PRSVYTS-GK-ASS 414 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC------CcceEec-Cc-ccc
Confidence 4567789999998888777654 12269999999999999999998876 1111111 10 000
Q ss_pred hHHHHHHHHHhHhhh--hcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEE
Q 025762 127 INVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFI 191 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~ 191 (248)
...+ ........ ..-....|....+..+|..|||+|+|+...+.+|++.||... .+++|+.+
T Consensus 415 aAGL---TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAA 491 (764)
T KOG0480|consen 415 AAGL---TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAA 491 (764)
T ss_pred cccc---eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhh
Confidence 0000 00000000 000112444556778999999999999989999999999754 23335555
Q ss_pred eCCCc-------------ccChHHHHhhhhe--eeeccCCccccchHHHHHHHHHHhh
Q 025762 192 CNYIS-------------RCTFSALFSFLLF--FMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 192 ~n~~~-------------~~~~~~l~~r~~~--i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
+|+.. .+. .++.|||+. +-+..+++..= ..+..+|...
T Consensus 492 ANPv~GhYdR~ktl~eNi~ms-ApimSRFDL~FiLlD~~nE~~D----~~ia~hIld~ 544 (764)
T KOG0480|consen 492 ANPVGGHYDRKKTLRENINMS-APIMSRFDLFFILLDDCNEVVD----YAIARHILDL 544 (764)
T ss_pred cCCcCCccccccchhhhcCCC-chhhhhhcEEEEEecCCchHHH----HHHHHHHHHH
Confidence 66431 244 889999985 33444444333 3444444443
No 265
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.2e-08 Score=85.84 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=87.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH--HH-HHHHHHhHhhhhcCCCCCCCCCCCCceEE
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN--VV-RTKIKTFAAVAVGSGQRRGGYPCPPYKII 159 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 159 (248)
..++++|+||||||++++++|+.+ +..+++++|....... .. .+....+...... ...||
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~-----------~pavi 494 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAESASHTETKLQAIFSRARRC-----------SPAVL 494 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhcccchhHHHHHHHHHHHhhc-----------CceEE
Confidence 359999999999999999999999 6677777775432111 11 1111111111111 22466
Q ss_pred EEeCCCCC--------CHHHHHHHHHHHh--hc---CCceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHH
Q 025762 160 ILDEADSM--------TEDAQNALRRTME--TY---SKVTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEY 225 (248)
Q Consensus 160 ilDEi~~l--------~~~~~~~L~~~l~--~~---~~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~ 225 (248)
++-++|-+ +...+..+...+. .. ..+..+|.+++....++ +.+++.+. .|.+..+++++. .
T Consensus 495 fl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp-~~i~~~f~~ei~~~~lse~qR----l 569 (953)
T KOG0736|consen 495 FLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLP-ADIQSLFLHEIEVPALSEEQR----L 569 (953)
T ss_pred EEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCC-HHHHHhhhhhccCCCCCHHHH----H
Confidence 66665554 3334444444444 11 23455777788889999 99999866 699999999999 8
Q ss_pred HHHHHHHhhcCcc
Q 025762 226 IRIIYASTLKFLE 238 (248)
Q Consensus 226 ~~l~~~~~~~~~~ 238 (248)
.+|+-+.....+.
T Consensus 570 ~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 570 EILQWYLNHLPLN 582 (953)
T ss_pred HHHHHHHhccccc
Confidence 8888777665543
No 266
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.78 E-value=3e-08 Score=75.57 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH----HhHhhhhcC
Q 025762 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK----TFAAVAVGS 144 (248)
Q Consensus 69 ~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 144 (248)
+...+...+.+. .+..+++||||||||+++..+...+...+ ..++.+.+.. .....+.+... ++.......
T Consensus 6 Q~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~ 80 (196)
T PF13604_consen 6 QREAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRI 80 (196)
T ss_dssp HHHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEE
T ss_pred HHHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcC
Confidence 334444444433 34688899999999999999988874332 2444443332 22222333211 011100000
Q ss_pred CC--CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 145 GQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 145 ~~--~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
.. ........+.+++||||+..++......|+..+.. ...++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred CcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 00 01111134567999999999999988888887766 34678999864
No 267
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.77 E-value=1.7e-07 Score=72.25 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=102.0
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
....|+.....+..+...--+++.+..+..++..++ ..+.++|+.|+|||.+.+++...+..... -.+.++.....
T Consensus 16 ~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d~~---~~v~i~~~~~s 91 (269)
T COG3267 16 FSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNEDQV---AVVVIDKPTLS 91 (269)
T ss_pred hccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCCce---EEEEecCcchh
Confidence 344455555544443333445667777766665554 26899999999999999977766632211 11223332222
Q ss_pred chHHHHHHHHHhHhhhhcCCC----------CCCCCCCCCc-eEEEEeCCCCCCHHHHHHHHHHHh---hcCCceEEEEE
Q 025762 126 GINVVRTKIKTFAAVAVGSGQ----------RRGGYPCPPY-KIIILDEADSMTEDAQNALRRTME---TYSKVTRFFFI 191 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~vlilDEi~~l~~~~~~~L~~~l~---~~~~~~~ii~~ 191 (248)
...........+.. ...+.. ........++ .++++||++.+..+..+.|..+.+ ++....+++++
T Consensus 92 ~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~ 170 (269)
T COG3267 92 DATLLEAIVADLES-QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLI 170 (269)
T ss_pred HHHHHHHHHHHhcc-CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeec
Confidence 22222222222211 000000 0000112233 689999999999888888766554 44445567888
Q ss_pred eCCCcc-----cChHHHHhhhhe-eeeccCCccccchHHHHHHHHHHhhc
Q 025762 192 CNYISR-----CTFSALFSFLLF-FMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 192 ~n~~~~-----~~~~~l~~r~~~-i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
+.+.-. ..+..+..|+.+ |.++|++.++. ..+++..+...
T Consensus 171 Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t----~~yl~~~Le~a 216 (269)
T COG3267 171 GQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET----GLYLRHRLEGA 216 (269)
T ss_pred CCcccchhhchHHHHhhhheEEEEEecCCcChHHH----HHHHHHHHhcc
Confidence 753211 113566678887 99999999999 55555554443
No 268
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.75 E-value=1.9e-08 Score=68.89 Aligned_cols=74 Identities=26% Similarity=0.399 Sum_probs=44.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCcc--ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEe
Q 025762 85 MLFYGPPGTGKTTTALAIAHQLFGPELY--KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilD 162 (248)
|.|+||||+|||++|..|+..+...... ...++...+.+. .. ..+ ....++++|
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~-~w-------~gY----------------~~q~vvi~D 56 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDK-FW-------DGY----------------QGQPVVIID 56 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccc-hh-------hcc----------------CCCcEEEEe
Confidence 5799999999999999999988422111 112222111110 00 000 013599999
Q ss_pred CCCCCCHH----HHHHHHHHHhhc
Q 025762 163 EADSMTED----AQNALRRTMETY 182 (248)
Q Consensus 163 Ei~~l~~~----~~~~L~~~l~~~ 182 (248)
|+...... ....+++++...
T Consensus 57 D~~~~~~~~~~~~~~~l~~l~s~~ 80 (107)
T PF00910_consen 57 DFGQDNDGYNYSDESELIRLISSN 80 (107)
T ss_pred ecCccccccchHHHHHHHHHHhcC
Confidence 99888644 566677777654
No 269
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.74 E-value=2.4e-08 Score=83.54 Aligned_cols=144 Identities=22% Similarity=0.233 Sum_probs=90.7
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHcC------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceE
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (248)
++.+++...-..++.|++++++.|.-.+-.+ +.-||++.|.||+.||-|.+.+.+.+- ...+
T Consensus 331 d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap------RgvY 404 (721)
T KOG0482|consen 331 DFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP------RGVY 404 (721)
T ss_pred cHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc------ccce
Confidence 3344443333447889999999998777543 112699999999999999999999872 1111
Q ss_pred E-eccCCCcch--HHHHHHHHHhHhhhhcCCC---CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC--------
Q 025762 118 E-LNASDDRGI--NVVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------- 183 (248)
Q Consensus 118 ~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------- 183 (248)
. -.++.+.+. ...++ ...+. .-+....+..+|++|||+|+|......++.++||...
T Consensus 405 TTGrGSSGVGLTAAVmkD---------pvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI 475 (721)
T KOG0482|consen 405 TTGRGSSGVGLTAAVMKD---------PVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGI 475 (721)
T ss_pred ecCCCCCccccchhhhcC---------CCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhcc
Confidence 1 111111111 11111 11111 1233456778999999999999999999999998754
Q ss_pred -----CceEEEEEeCCC-------------cccChHHHHhhhhe
Q 025762 184 -----KVTRFFFICNYI-------------SRCTFSALFSFLLF 209 (248)
Q Consensus 184 -----~~~~ii~~~n~~-------------~~~~~~~l~~r~~~ 209 (248)
..+.|+.++|+. -.++ .+|+|||..
T Consensus 476 ~TtLNAR~sILaAANPayGRYnprrs~e~NI~LP-aALLSRFDl 518 (721)
T KOG0482|consen 476 NTTLNARTSILAAANPAYGRYNPRRSPEQNINLP-AALLSRFDL 518 (721)
T ss_pred ccchhhhHHhhhhcCccccccCcccChhHhcCCc-HHHHHhhhh
Confidence 222344445532 1266 899999984
No 270
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.73 E-value=5.5e-08 Score=70.80 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=68.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC-CcchHHHHHHH--------------------HHhHhhhh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINVVRTKI--------------------KTFAAVAV 142 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------------~~~~~~~~ 142 (248)
-+.+++++|.|||++|.+++..+...+. ...++.+-.+. ..+....-..+ ........
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGY-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 4778888899999999999999854433 33333332221 11111110000 00000000
Q ss_pred cCCCCCCCCCCCCceEEEEeCCCCC-C--HHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhh
Q 025762 143 GSGQRRGGYPCPPYKIIILDEADSM-T--EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLL 208 (248)
Q Consensus 143 ~~~~~~~~~~~~~~~vlilDEi~~l-~--~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~ 208 (248)
.+...........++++||||+... + .-..+.++++++.+++...+|+|+.... +.|..+.+
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p----~~l~e~AD 147 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP----KELIEAAD 147 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC----HHHHHhCc
Confidence 0000111112346799999998765 2 2245678889999999999999997643 66666655
No 271
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.71 E-value=1.1e-07 Score=81.93 Aligned_cols=144 Identities=17% Similarity=0.098 Sum_probs=95.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcC--CCCCCCCCCCCceEEEE
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIIL 161 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vlil 161 (248)
.++++|.|||||-.+++++..... ...+++.++|......-.-.+.+........+. .-+.+.+.++..+.+|+
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~----~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSE----AAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhccc----ccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHH
Confidence 699999999999999999988753 355788888877543332233322221111111 11355667788899999
Q ss_pred eCCCCCCHHHHHHHHHHHhhcC----------CceEEEEEeCC-------CcccChHHHHhhhh--eeeeccCCcc-ccc
Q 025762 162 DEADSMTEDAQNALRRTMETYS----------KVTRFFFICNY-------ISRCTFSALFSFLL--FFMFFSLLDQ-ISF 221 (248)
Q Consensus 162 DEi~~l~~~~~~~L~~~l~~~~----------~~~~ii~~~n~-------~~~~~~~~l~~r~~--~i~~~~~~~~-~~~ 221 (248)
|||+.||...|..|+++++++. -..++|.+|+. ...+- +.|..|.. .|.++|+.+. +-
T Consensus 414 deIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fr-edLyyrL~~~~i~lP~lr~R~d~- 491 (606)
T COG3284 414 DEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFR-EDLYYRLNAFVITLPPLRERSDR- 491 (606)
T ss_pred HHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCch-HHHHHHhcCeeeccCchhccccc-
Confidence 9999999999999999998764 12346666653 24455 67777866 5777777663 44
Q ss_pred hHHHHHHHHHHhhcC
Q 025762 222 DKEYIRIIYASTLKF 236 (248)
Q Consensus 222 ~~~~~~l~~~~~~~~ 236 (248)
...|.++..+++
T Consensus 492 ---~~~l~~~~~~~~ 503 (606)
T COG3284 492 ---IPLLDRILKREN 503 (606)
T ss_pred ---HHHHHHHHHHcc
Confidence 445555554444
No 272
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.1e-07 Score=78.49 Aligned_cols=96 Identities=25% Similarity=0.339 Sum_probs=56.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-cchHH---HHHHHHHhHhhhhcCCCCCCCCCCCCceE
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-RGINV---VRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 158 (248)
.+++|.||||+|||+||..+|..- ..+++.+-.++. .+... +....+.+. ..+.+ +-.+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~sEsaKc~~i~k~F~-DAYkS----------~lsi 601 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGLSESAKCAHIKKIFE-DAYKS----------PLSI 601 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCccHHHHHHHHHHHHH-HhhcC----------cceE
Confidence 369999999999999999999986 556665544332 22221 111111111 11111 2359
Q ss_pred EEEeCCCCC----------CHHHHHHHHHHHhhcCCc--eEEEEEeCCC
Q 025762 159 IILDEADSM----------TEDAQNALRRTMETYSKV--TRFFFICNYI 195 (248)
Q Consensus 159 lilDEi~~l----------~~~~~~~L~~~l~~~~~~--~~ii~~~n~~ 195 (248)
+++||+.++ +.-...+|+-++...++. ..+|++|+..
T Consensus 602 ivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~ 650 (744)
T KOG0741|consen 602 IVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR 650 (744)
T ss_pred EEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH
Confidence 999998766 233455566666665554 3366666543
No 273
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.68 E-value=7e-08 Score=90.58 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=101.5
Q ss_pred cccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHh
Q 025762 62 DVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (248)
.++..+.+.+.+.+.++.. ..-.++|.||+.+|||+++..+|+.. +..++.++.-... .+++.+.++..
T Consensus 866 hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEHT---dlqeYiGTyvT 936 (4600)
T COG5271 866 HYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARET------GHKFVRINNHEHT---DLQEYIGTYVT 936 (4600)
T ss_pred eeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHh------CccEEEecCcccc---hHHHHhhceee
Confidence 3444455555455555443 33359999999999999999999998 4566666654432 23333444333
Q ss_pred hhhcCC-CCCCCC--CCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC--------------CceEEEEEe-CCC------
Q 025762 140 VAVGSG-QRRGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETYS--------------KVTRFFFIC-NYI------ 195 (248)
Q Consensus 140 ~~~~~~-~~~~~~--~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~--------------~~~~ii~~~-n~~------ 195 (248)
...+.- ...|.. ...++..+|+||+...+.++.++|.+++++-. +.. .+++| |++
T Consensus 937 dd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F-~lFATQNppg~YgGR 1015 (4600)
T COG5271 937 DDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNF-RLFATQNPPGGYGGR 1015 (4600)
T ss_pred cCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCe-eEEeecCCCccccch
Confidence 222211 111111 12245689999999999999999999997632 233 34444 543
Q ss_pred cccChHHHHhhhheeeeccCCccccchHHHHHHHHHH
Q 025762 196 SRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 196 ~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
..+. +++++||..+.|...+++|+ ..+|...|
T Consensus 1016 K~LS-rAFRNRFlE~hFddipedEl----e~ILh~rc 1047 (4600)
T COG5271 1016 KGLS-RAFRNRFLEMHFDDIPEDEL----EEILHGRC 1047 (4600)
T ss_pred HHHH-HHHHhhhHhhhcccCcHHHH----HHHHhccC
Confidence 2255 89999999999999999999 77766544
No 274
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.67 E-value=9e-08 Score=80.26 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=93.4
Q ss_pred cccccHHHHHHHHHHHHcCCCC------------eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHH
Q 025762 62 DVAHQEEVVRVLTNTLETANCP------------HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~------------~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (248)
.+.|++++++++.-.++.+... |||+.|.|||.||-+.+.+-+.. ++-....+.+.+...
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs--------PIaVYTSGKGSSAAG 403 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS--------PIAVYTSGKGSSAAG 403 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC--------ceEEEecCCCccccc
Confidence 5679999999999888876322 69999999999999999887765 222222222221111
Q ss_pred HHHHHHHhHhhhhcCC-C-CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEEeCC
Q 025762 130 VRTKIKTFAAVAVGSG-Q-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNY 194 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~n~ 194 (248)
+. ........... + .-+....+.++|++|||+|+|..+..-++.+.||... ..++++.++|+
T Consensus 404 LT---ASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 404 LT---ASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred ce---eeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 10 00000000000 1 1233456778999999999999999999999998653 23345555564
Q ss_pred Cc-----------ccC-hHHHHhhhheeeeccCCcccc
Q 025762 195 IS-----------RCT-FSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 195 ~~-----------~~~-~~~l~~r~~~i~~~~~~~~~~ 220 (248)
.+ .++ +++++|||..|.+-.-..++.
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~ 518 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEE 518 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcch
Confidence 21 122 589999999766655555443
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.63 E-value=1.5e-07 Score=88.51 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhh-c---CCC
Q 025762 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-G---SGQ 146 (248)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~ 146 (248)
.++.+++..++ .+++.|.||+|||+++.++|+.. +..++.++.++....- ++...-..... + +..
T Consensus 1534 ~rVlRAmqv~k--pilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTdL~---DLfGsd~Pve~~Gef~w~d 1602 (4600)
T COG5271 1534 RRVLRAMQVGK--PILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTDLC---DLFGSDLPVEEGGEFRWMD 1602 (4600)
T ss_pred HHHHHHHhcCC--ceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccchHH---HHhCCCCCcccCceeEecc
Confidence 45556665555 79999999999999999999998 6677888877654322 11111100000 0 000
Q ss_pred CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC--------------CceEEEEEeCC------CcccChHHHHhh
Q 025762 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS--------------KVTRFFFICNY------ISRCTFSALFSF 206 (248)
Q Consensus 147 ~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~--------------~~~~ii~~~n~------~~~~~~~~l~~r 206 (248)
.+-.....+++.+++||+...+..+.+.|...++.+. ++.++..+-|+ ...++ ..+.+|
T Consensus 1603 apfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLP-kSF~nR 1681 (4600)
T COG5271 1603 APFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLP-KSFLNR 1681 (4600)
T ss_pred cHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCC-HHHhhh
Confidence 0001123346799999999999999999988887553 33344444343 34577 999999
Q ss_pred hheeeeccCCccccchHHHHHHH
Q 025762 207 LLFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 207 ~~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
|.++.+..++.+++ ..++.
T Consensus 1682 FsvV~~d~lt~dDi----~~Ia~ 1700 (4600)
T COG5271 1682 FSVVKMDGLTTDDI----THIAN 1700 (4600)
T ss_pred hheEEecccccchH----HHHHH
Confidence 99999999999998 55543
No 276
>PHA02774 E1; Provisional
Probab=98.62 E-value=2.6e-07 Score=79.56 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCC-CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCC
Q 025762 70 VRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (248)
Q Consensus 70 ~~~l~~~l~~~~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (248)
...|..++.... ..+++|+||||||||+++.+|++.+.+ ..+..++.... .. ++.
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G-----~vi~fvN~~s~---Fw----Lqp------------ 476 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG-----KVISFVNSKSH---FW----LQP------------ 476 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEEECccc---cc----cch------------
Confidence 345555554432 346999999999999999999999831 12222332110 00 111
Q ss_pred CCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhcC-------------CceEEEEEeCCCcccC--hHHHHhhhheeee
Q 025762 149 GGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYS-------------KVTRFFFICNYISRCT--FSALFSFLLFFMF 212 (248)
Q Consensus 149 ~~~~~~~~~vlilDEi~~l-~~~~~~~L~~~l~~~~-------------~~~~ii~~~n~~~~~~--~~~l~~r~~~i~~ 212 (248)
....+++++||+..- ..-....|.++++..+ ....+|+|||....-. ...|.||+..+.|
T Consensus 477 ----l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F 552 (613)
T PHA02774 477 ----LADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEF 552 (613)
T ss_pred ----hccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEEC
Confidence 112469999999332 1223345777776652 2234899998432222 2567789888887
Q ss_pred ccCCccc--------c-chHHHHHHHHHHhhcCcc
Q 025762 213 FSLLDQI--------S-FDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 213 ~~~~~~~--------~-~~~~~~~l~~~~~~~~~~ 238 (248)
+.+-+-+ + -..+...+++.-.+..+.
T Consensus 553 ~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 553 PNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred CCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 7554411 0 122255666655555554
No 277
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.60 E-value=1.2e-06 Score=83.63 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=88.1
Q ss_pred CCccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEE---eccCC--C-----
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE---LNASD--D----- 124 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~---~~~~~--~----- 124 (248)
+..+++++|.+..++.+..++.. .....+.|+|++|+||||+|++++..+..... ..-++. +.... .
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~-g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ-SSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC-eEEEeeccccccchhhcccccc
Confidence 35678899999999988887743 34456999999999999999999888743221 111110 00000 0
Q ss_pred cchHHHHHHHHHhHhhhhcC-CCC------CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcc
Q 025762 125 RGINVVRTKIKTFAAVAVGS-GQR------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~ 197 (248)
............+....... ... .......++-+|||||++.. .+++.|....+.....++||+||.+...
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 00000000001111000000 000 00011234568999999753 5566666555544556778888875322
Q ss_pred cChHHHHhhh-heeeeccCCccccchHHHHHHHHHHh
Q 025762 198 CTFSALFSFL-LFFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 198 ~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
+. . ..+ .++.+..++.++. ...+...+.
T Consensus 337 l~-~---~~~~~~~~v~~l~~~ea----~~LF~~~Af 365 (1153)
T PLN03210 337 LR-A---HGIDHIYEVCLPSNELA----LEMFCRSAF 365 (1153)
T ss_pred HH-h---cCCCeEEEecCCCHHHH----HHHHHHHhc
Confidence 21 0 111 2566777777766 555555443
No 278
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.59 E-value=5.1e-07 Score=79.70 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=61.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH---------------------hHhhh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT---------------------FAAVA 141 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 141 (248)
.-.+|+|+|||||||++..+...+..........+.+..+.......+.+.+.. +....
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 359999999999999999988776321110111222333333333333322221 00000
Q ss_pred hcCC----CCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 142 VGSG----QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 142 ~~~~----~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
.... .........+.+++||||+..++......|++.+ +..+++|+++..
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 0000 0010111223579999999999988888777765 456889999863
No 279
>PHA02624 large T antigen; Provisional
Probab=98.58 E-value=7.1e-07 Score=77.27 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEE
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlil 161 (248)
...++|+||||||||+++.+|++.+. ...+.++.+.......+.-.+. ..+.++
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~------G~vlsVNsPt~ks~FwL~pl~D--------------------~~~~l~ 484 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCG------GKSLNVNCPPDKLNFELGCAID--------------------QFMVVF 484 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC------CeEEEeeCCcchhHHHhhhhhh--------------------ceEEEe
Confidence 34699999999999999999999983 2344455444333222222221 258999
Q ss_pred eCCCCCCH-------H----HHHHHHHHHhhc--------CCc------eEEEEEeCCCcccChHHHHhhhh-eeeecc
Q 025762 162 DEADSMTE-------D----AQNALRRTMETY--------SKV------TRFFFICNYISRCTFSALFSFLL-FFMFFS 214 (248)
Q Consensus 162 DEi~~l~~-------~----~~~~L~~~l~~~--------~~~------~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~ 214 (248)
||+..-.- . -..-|.+.++.. +.+ ...|+|+| ...++ .++.-||. ++.|.+
T Consensus 485 dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP-~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 485 EDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIP-QTVKARFAKVLDFKP 561 (647)
T ss_pred eeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-Ccccc-hhHHHHHHHhccccc
Confidence 99843211 0 113345555443 111 12677777 46777 88888876 566543
No 280
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.57 E-value=1.9e-07 Score=77.35 Aligned_cols=125 Identities=11% Similarity=0.007 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC--CCCCCCCCceE
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKI 158 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v 158 (248)
.+++++|+|++|+|||+|+-.+...+.........+. ....+.-..+.......... ..........|
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh----------~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~l 130 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH----------EFMLDVHSRLHQLRGQDDPLPQVADELAKESRL 130 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc----------HHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCE
Confidence 4668999999999999999999998833211111111 01111111111100000000 00000122359
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhhcC-CceEEEEEeCCCcc------cC-------hHHHHhhhheeeeccC
Q 025762 159 IILDEADSMTEDAQNALRRTMETYS-KVTRFFFICNYISR------CT-------FSALFSFLLFFMFFSL 215 (248)
Q Consensus 159 lilDEi~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~~~~------~~-------~~~l~~r~~~i~~~~~ 215 (248)
|++||++--+....-.|-.+++..- ....+|+|||.+.. +. .+.|..+|.++.+...
T Consensus 131 LcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 131 LCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred EEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 9999987765444433444444333 34567778884321 11 1455567777776654
No 281
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.56 E-value=3.6e-07 Score=77.85 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=88.4
Q ss_pred cccccHHHHHHHHHHHHcC------CCC------eEEEEcCCCCcHHHHHHHHHHHhcC------CCccccceEE-eccC
Q 025762 62 DVAHQEEVVRVLTNTLETA------NCP------HMLFYGPPGTGKTTTALAIAHQLFG------PELYKSRVLE-LNAS 122 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~------~~~------~ill~Gp~G~GKT~la~~la~~~~~------~~~~~~~~~~-~~~~ 122 (248)
.+.|++.++++|.-.+..+ ++. |++++|.|.|.||-|.+.+.+.+.. .+-.+.-..- +...
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD 381 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD 381 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeec
Confidence 5679999999998777654 121 5999999999999999999887610 0100000000 0000
Q ss_pred CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEE
Q 025762 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFF 189 (248)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii 189 (248)
...+.. ....+....+.++|++|||+|+|+.-..-++.++||... ..|+++
T Consensus 382 ~eTGER----------------RLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 382 QETGER----------------RLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred cccchh----------------hhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 001111 112344556778999999999999999999999998753 556788
Q ss_pred EEeCCCc-------------ccChHHHHhhhhe
Q 025762 190 FICNYIS-------------RCTFSALFSFLLF 209 (248)
Q Consensus 190 ~~~n~~~-------------~~~~~~l~~r~~~ 209 (248)
.++|+.. .++ +.|+|||..
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLp-DSLLSRFDL 477 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLP-DSLLSRFDL 477 (818)
T ss_pred eecCccccccCCCCChhhccCCc-HHHHhhhcE
Confidence 8888532 266 899999985
No 282
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.49 E-value=3.9e-06 Score=65.25 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=68.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc---------------hHHHHHHHHHhHhhhhcCCCCC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---------------INVVRTKIKTFAAVAVGSGQRR 148 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 148 (248)
++++.|++|+|||+++..+...+.... ..++.+....... ...+...+..............
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f---~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF---DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC---CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999999988763221 1112221111110 0011111111000000000000
Q ss_pred CCCCCCCceEEEEeCCCCCCHHHHHHHHHHH-hhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCcccc
Q 025762 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTM-ETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 149 ~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l-~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~ 220 (248)
.........++|+||+..-.. ..+.+..++ ..++-+..+|+++.....++ +.++.-+..+.+-+.+..++
T Consensus 92 ~~~k~~~~~LiIlDD~~~~~~-k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp-~~iR~n~~y~i~~~~s~~dl 162 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDKKL-KSKILRQFFNNGRHYNISIIFLSQSYFHLP-PNIRSNIDYFIIFNNSKRDL 162 (241)
T ss_pred cccCCCCCeEEEEeCCCCchh-hhHHHHHHHhcccccceEEEEEeeecccCC-HHHhhcceEEEEecCcHHHH
Confidence 001123357999999865211 122344444 45556677999999999998 88877776544334555555
No 283
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.49 E-value=5.2e-07 Score=68.55 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 156 ~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
..++|+||++.+++..... ++.+...++++|++++.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKM---ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEEEEE--
T ss_pred ceEEEEecccCCCHHHHHH---HHcccCCCcEEEEecCc
Confidence 4799999999998775544 45566677889999864
No 284
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.48 E-value=1.8e-06 Score=76.15 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=59.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCcc--ccceEEeccCCCcchHHHHHHHHHhH---------------------h
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELY--KSRVLELNASDDRGINVVRTKIKTFA---------------------A 139 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 139 (248)
...+|+|+|||||||++..+...+...... ...+. +..+.......+.+.+.... .
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~-l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHr 239 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIA-LAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHR 239 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEE-EECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhh
Confidence 469999999999999999888776321110 11222 22322222222222221100 0
Q ss_pred hh---hcC-CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 140 VA---VGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 140 ~~---~~~-~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.. ... ..........+.++|||||+..++......|++.+ +...++|+++.
T Consensus 240 lLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD 294 (586)
T TIGR01447 240 LLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGD 294 (586)
T ss_pred hhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECC
Confidence 00 000 00000111234689999999999988877777665 45678999986
No 285
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=98.47 E-value=7e-07 Score=66.77 Aligned_cols=122 Identities=13% Similarity=0.096 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC-CcchHHHHHHHHHhHhhhhc-----------------
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAVG----------------- 143 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------- 143 (248)
..+++++|++|.||||+|.+++..+.+.+. ...++.+-.+. ..+....-.....+......
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 347999999999999999999998854443 23333332222 11111111100000000000
Q ss_pred ---CCCCCCCCCCCCceEEEEeCCCCCC---HHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhh
Q 025762 144 ---SGQRRGGYPCPPYKIIILDEADSMT---EDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLL 208 (248)
Q Consensus 144 ---~~~~~~~~~~~~~~vlilDEi~~l~---~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~ 208 (248)
+...........++++||||+..+- --..+.+.++++.+++..-+|+|+.... ++|..+.+
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p----~~Lie~AD 167 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP----RELIEAAD 167 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC----HHHHHhCc
Confidence 0000111124567999999976541 1134567888889998888999997543 55555544
No 286
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.47 E-value=1.2e-05 Score=64.01 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=88.6
Q ss_pred cccHHHHHHHHHH---HHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhh
Q 025762 64 AHQEEVVRVLTNT---LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (248)
Q Consensus 64 ~g~~~~~~~l~~~---l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (248)
+--+++++.+.+. +... +.|+++.|.+|+||+++++..+... +..++++.....-+....++.++.....
T Consensus 11 Vlf~~ai~hi~ri~RvL~~~-~Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i~~~~~y~~~~f~~dLk~~~~~ 83 (268)
T PF12780_consen 11 VLFDEAIEHIARISRVLSQP-RGHALLVGVGGSGRQSLARLAAFIC------GYEVFQIEITKGYSIKDFKEDLKKALQK 83 (268)
T ss_dssp ---HHHHHHHHHHHHHHCST-TEEEEEECTTTSCHHHHHHHHHHHT------TEEEE-TTTSTTTHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHcCC-CCCeEEecCCCccHHHHHHHHHHHh------ccceEEEEeeCCcCHHHHHHHHHHHHHH
Confidence 4445555544444 4333 3589999999999999999888877 5677777766655555555555554333
Q ss_pred hhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH-----------------------------------------
Q 025762 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM----------------------------------------- 179 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l----------------------------------------- 179 (248)
.... .+..+++++|-+-......+.+..++
T Consensus 84 ag~~---------~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F 154 (268)
T PF12780_consen 84 AGIK---------GKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFF 154 (268)
T ss_dssp HHCS----------S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHH
T ss_pred Hhcc---------CCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHH
Confidence 2221 12357888886655433222222222
Q ss_pred -hhcCCceEEEEEeCCCcccC------hHHHHhhhheeeeccCCccccchHHHHHHHHHHhh
Q 025762 180 -ETYSKVTRFFFICNYISRCT------FSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 180 -~~~~~~~~ii~~~n~~~~~~------~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
+.-..+..||++-++..... +|+|.++|.+.-|.+-+.+.+ ..+....+..
T Consensus 155 ~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL----~~Va~~~l~~ 212 (268)
T PF12780_consen 155 IERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEAL----LSVANKFLSD 212 (268)
T ss_dssp HHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHH----HHHHHHHCCH
T ss_pred HHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHH----HHHHHHHHHh
Confidence 11224556777766543322 578888888888888888888 6666655444
No 287
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=3.4e-06 Score=70.52 Aligned_cols=151 Identities=12% Similarity=0.121 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCC---CccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC-----CCCCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-----RGGYPC 153 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 153 (248)
+..++|+||+|+||||++..+|..+... ......++..++........+......+. ........ ......
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg-vpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG-IPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC-cceEeeCcHHHHHHHHHHh
Confidence 4469999999999999999999877422 22333444444433222222222111110 01000000 000112
Q ss_pred CCceEEEEeCCCCCCHH--HHHHHHHHHhhcCC--ceEEEEEeCCCcccChHHHHhhh-----heeeeccCCccccchHH
Q 025762 154 PPYKIIILDEADSMTED--AQNALRRTMETYSK--VTRFFFICNYISRCTFSALFSFL-----LFFMFFSLLDQISFDKE 224 (248)
Q Consensus 154 ~~~~vlilDEi~~l~~~--~~~~L~~~l~~~~~--~~~ii~~~n~~~~~~~~~l~~r~-----~~i~~~~~~~~~~~~~~ 224 (248)
.++++++||.+++.+.+ ....+..+++.... ...+|+.++....-. ..+.+++ .-+-|..++...-
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~~~~~I~TKlDet~~---- 327 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFSYKTVIFTKLDETTC---- 327 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCCCCEEEEEeccCCCc----
Confidence 45789999999998744 34566677765432 344555555443333 4454544 2366777777776
Q ss_pred HHHHHHHHhhcCcc
Q 025762 225 YIRIIYASTLKFLE 238 (248)
Q Consensus 225 ~~~l~~~~~~~~~~ 238 (248)
...+-.++...+++
T Consensus 328 ~G~~l~~~~~~~~P 341 (388)
T PRK12723 328 VGNLISLIYEMRKE 341 (388)
T ss_pred chHHHHHHHHHCCC
Confidence 66666666665554
No 288
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=1.9e-06 Score=71.49 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+||+|+||||++..++..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355799999999999999999998863
No 289
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.45 E-value=3.3e-06 Score=67.71 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCC
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
...-+-+.+....+...++++.||.|+|||.+........ .+.+...-.+.+++.-....-.+.....++.........
T Consensus 34 ~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k 112 (408)
T KOG2228|consen 34 KHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVK 112 (408)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhhe
Confidence 3333445555566778889999999999999987655552 222223344555554433222333333333332221111
Q ss_pred -----C----------CCCCCCCCc-eEEEEeCCCCCCH-HHHHHHHHHHh---hcCCceEEEEEeCC---CcccChHHH
Q 025762 147 -----R----------RGGYPCPPY-KIIILDEADSMTE-DAQNALRRTME---TYSKVTRFFFICNY---ISRCTFSAL 203 (248)
Q Consensus 147 -----~----------~~~~~~~~~-~vlilDEi~~l~~-~~~~~L~~~l~---~~~~~~~ii~~~n~---~~~~~~~~l 203 (248)
. ..+....+. -++|+||+|..-+ .-|..|+++++ ....+..+|.+|.. ...+- ..+
T Consensus 113 ~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LE-KRV 191 (408)
T KOG2228|consen 113 SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLE-KRV 191 (408)
T ss_pred eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHH-HHH
Confidence 0 111222233 4566778998743 34445555555 33344445555543 33444 677
Q ss_pred Hhhhhe---eeeccCCccccchHHHHHHHHHH
Q 025762 204 FSFLLF---FMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 204 ~~r~~~---i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
.|||.+ +.+++.+-++. ..+++..+
T Consensus 192 KSRFshr~I~m~~~~~l~~y----v~l~r~ll 219 (408)
T KOG2228|consen 192 KSRFSHRVIFMLPSLPLGDY----VDLYRKLL 219 (408)
T ss_pred HhhcccceeeccCCCChHHH----HHHHHHHh
Confidence 788762 34444444566 55555443
No 290
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.45 E-value=1.6e-06 Score=60.06 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=38.3
Q ss_pred ccccccHHHHHHHHHHHHc----CC---CCeEEEEcCCCCcHHHHHHHHHHHhcCCCcccc
Q 025762 61 KDVAHQEEVVRVLTNTLET----AN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS 114 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~----~~---~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~ 114 (248)
..+.||.-+.+.+..++.. .. +--+-|+|+||||||++++.+|+.+...+..+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~ 85 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSP 85 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCC
Confidence 3567888777666665543 21 112679999999999999999999865554333
No 291
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.45 E-value=2.1e-06 Score=64.42 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 64 AHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~~-~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|.+++..+...+... ...+++|.+|+|+|||.++..++..+
T Consensus 6 ~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l 49 (184)
T PF04851_consen 6 PYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL 49 (184)
T ss_dssp HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc
Confidence 35778888888888776 56699999999999999999877776
No 292
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.42 E-value=8.7e-07 Score=67.37 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCC----------CCCC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG----------GYPC 153 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 153 (248)
.++|+||+|+||||++-.+|..+... ....-++..+.........++.....+............ ....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 58999999999999999999988544 434444444444433333333322222111000000000 0011
Q ss_pred CCceEEEEeCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEEeCCCcccChHHHHhhh-----heeeeccCCccccchHHH
Q 025762 154 PPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYISRCTFSALFSFL-----LFFMFFSLLDQISFDKEY 225 (248)
Q Consensus 154 ~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~-~~~ii~~~n~~~~~~~~~l~~r~-----~~i~~~~~~~~~~~~~~~ 225 (248)
.++++++||-.++.+ .+....|.++++.... ...+++.++....-. ..+..+. .-+-|..+++..- .
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~~lIlTKlDet~~----~ 156 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGIDGLILTKLDETAR----L 156 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTCEEEEESTTSSST----T
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCceEEEEeecCCCC----c
Confidence 235799999998876 3455666666665543 344555555444333 3333332 2366888888777 5
Q ss_pred HHHHHHHhhcCcc
Q 025762 226 IRIIYASTLKFLE 238 (248)
Q Consensus 226 ~~l~~~~~~~~~~ 238 (248)
.-+-.++...+++
T Consensus 157 G~~l~~~~~~~~P 169 (196)
T PF00448_consen 157 GALLSLAYESGLP 169 (196)
T ss_dssp HHHHHHHHHHTSE
T ss_pred ccceeHHHHhCCC
Confidence 6666666666655
No 293
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.42 E-value=3.3e-06 Score=71.74 Aligned_cols=151 Identities=16% Similarity=0.104 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc-CCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCC-----CCCCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-----GYPCPP 155 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 155 (248)
+..++|+||+|+||||++..++..+. ..+.....++..+.........+......+ ........... ......
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~-~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM-GIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh-CCceEccCCHHhHHHHHHHhCC
Confidence 44799999999999999999998874 233333333333332111111111111000 00000000000 001235
Q ss_pred ceEEEEeCCCCCC--HHHHHHHHHHHh-hcC-CceEEEEEeCCCcccChHHHHhhhh-----eeeeccCCccccchHHHH
Q 025762 156 YKIIILDEADSMT--EDAQNALRRTME-TYS-KVTRFFFICNYISRCTFSALFSFLL-----FFMFFSLLDQISFDKEYI 226 (248)
Q Consensus 156 ~~vlilDEi~~l~--~~~~~~L~~~l~-~~~-~~~~ii~~~n~~~~~~~~~l~~r~~-----~i~~~~~~~~~~~~~~~~ 226 (248)
+++++||..++.+ ......|..+++ ... ....+|+.++....-. ..+..++. .+-|..++.... ..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l-~~~~~~f~~~~~~~vI~TKlDet~~----~G 374 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDL-KDIYKHFSRLPLDGLIFTKLDETSS----LG 374 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHH-HHHHHHhCCCCCCEEEEeccccccc----cc
Confidence 7899999988764 445666777776 222 2334566665444333 45544433 356777777666 44
Q ss_pred HHHHHHhhcCcc
Q 025762 227 RIIYASTLKFLE 238 (248)
Q Consensus 227 ~l~~~~~~~~~~ 238 (248)
-+..++...+++
T Consensus 375 ~i~~~~~~~~lP 386 (424)
T PRK05703 375 SILSLLIESGLP 386 (424)
T ss_pred HHHHHHHHHCCC
Confidence 555555555554
No 294
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.41 E-value=4.2e-06 Score=75.76 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH-------HhH
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK-------TFA 138 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 138 (248)
.+.+...+..+. ..+.++|+|+||||||++++++...+...+. ...+..+.++ ......+.+... .+.
T Consensus 325 ~~~Q~~Ai~~~~---~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApT-g~AA~~L~e~~g~~a~Tih~lL 399 (720)
T TIGR01448 325 SEEQKQALDTAI---QHKVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPT-GRAAKRLGEVTGLTASTIHRLL 399 (720)
T ss_pred CHHHHHHHHHHH---hCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCc-hHHHHHHHHhcCCccccHHHHh
Confidence 344444444443 2237999999999999999999887743221 1223323222 222122221110 000
Q ss_pred hhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
..................++|||||+..++......|+..+ +...++|+++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD 451 (720)
T TIGR01448 400 GYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGD 451 (720)
T ss_pred hccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECc
Confidence 00000000000011234689999999999988887777654 45677899885
No 295
>PRK04296 thymidine kinase; Provisional
Probab=98.41 E-value=4.7e-06 Score=63.21 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=51.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC-CCcc-hH----------------HHHHHHHHhHhhhhcCC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRG-IN----------------VVRTKIKTFAAVAVGSG 145 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~~-~~----------------~~~~~~~~~~~~~~~~~ 145 (248)
-.+++||+|+|||+++..++..+...+. .++.+.+. +... .. ...+....+..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~---~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~------ 74 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGM---KVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE------ 74 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCC---eEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh------
Confidence 5789999999999999999988743321 22222221 1000 00 00011111000
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 146 ~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
...+.++++|||++.++.+....|.+.+... ...+|+++-
T Consensus 75 ------~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~--g~~vi~tgl 114 (190)
T PRK04296 75 ------EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDL--GIPVICYGL 114 (190)
T ss_pred ------hCCCCCEEEEEccccCCHHHHHHHHHHHHHc--CCeEEEEec
Confidence 1234579999999999877655566665433 344666653
No 296
>PRK13695 putative NTPase; Provisional
Probab=98.41 E-value=4.8e-06 Score=62.24 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=39.9
Q ss_pred CceEEEEeCCCCC---CHHHHHHHHHHHhhcCCceEEEEEeCCCc--ccChHHHHhhh--heeeeccCCcccc
Q 025762 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNYIS--RCTFSALFSFL--LFFMFFSLLDQIS 220 (248)
Q Consensus 155 ~~~vlilDEi~~l---~~~~~~~L~~~l~~~~~~~~ii~~~n~~~--~~~~~~l~~r~--~~i~~~~~~~~~~ 220 (248)
+.+++++||++.+ .....+.+..+++. ...+|++++... ... +.+..+. .++.+.+-+.+++
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~-~~i~~~~~~~i~~~~~~~r~~~ 164 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFV-QEIKSRPGGRVYELTPENRDSL 164 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHH-HHHhccCCcEEEEEcchhhhhH
Confidence 4579999997655 34455666666632 245778887532 334 5566653 3688888888877
No 297
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.40 E-value=1e-05 Score=66.94 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=85.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc-CCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCC---CC-----CCCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG---QR-----RGGYP 152 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~ 152 (248)
+..+.|+||+|+||||....||.... ...-....++..+.........+ ..++......- .. .....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL----k~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL----KTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH----HHHHHHhCCceEEecCHHHHHHHHHH
Confidence 55799999999999999888888874 23333445555555443332222 22222111100 00 00011
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEEeCCCcccChHHHHhhhhe-----eeeccCCccccchHH
Q 025762 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYISRCTFSALFSFLLF-----FMFFSLLDQISFDKE 224 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~-~~~ii~~~n~~~~~~~~~l~~r~~~-----i~~~~~~~~~~~~~~ 224 (248)
...++++++|=+++-. ......|..+++..+. ...+++.++...... .++..++.. +=|..+++...
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl-kei~~~f~~~~i~~~I~TKlDET~s---- 353 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL-KEIIKQFSLFPIDGLIFTKLDETTS---- 353 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH-HHHHHHhccCCcceeEEEcccccCc----
Confidence 3346899999998864 4456667777765533 344677777666655 777776543 45666677666
Q ss_pred HHHHHHHHhhcCcc
Q 025762 225 YIRIIYASTLKFLE 238 (248)
Q Consensus 225 ~~~l~~~~~~~~~~ 238 (248)
..-+-.+..+.+++
T Consensus 354 ~G~~~s~~~e~~~P 367 (407)
T COG1419 354 LGNLFSLMYETRLP 367 (407)
T ss_pred hhHHHHHHHHhCCC
Confidence 55555555555544
No 298
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.39 E-value=1.6e-06 Score=61.79 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
++++.||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 6899999999999999999888743
No 299
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=98.38 E-value=1.2e-05 Score=59.31 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=65.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC-CcchH-HHHHHHHHhHh------------------hhhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGIN-VVRTKIKTFAA------------------VAVG 143 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~------------------~~~~ 143 (248)
-+.+++++|.||||+|..++..+...+. ...++.+-.+. ..+.. .+....-.+.. ....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 85 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAA 85 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHH
Confidence 5788888999999999999999855443 22222222221 11111 11110000000 0000
Q ss_pred CCCCCCCCCCCCceEEEEeCCC------CCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhh
Q 025762 144 SGQRRGGYPCPPYKIIILDEAD------SMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLL 208 (248)
Q Consensus 144 ~~~~~~~~~~~~~~vlilDEi~------~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~ 208 (248)
+...........++++||||+. .++. +.+.++++.+++..-+|+|+... + +.|....+
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~---p-~~l~e~AD 149 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGC---P-QDLLELAD 149 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCC---C-HHHHHhCc
Confidence 0000111123467999999976 4443 35778889999998999999754 3 66666655
No 300
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.38 E-value=4.5e-07 Score=78.16 Aligned_cols=93 Identities=12% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCCCCcccccccccCCCCCchHHHHhhhcccccCc-----------cchhh--ccCCCccccccccHHHHHHHHHHHHc-
Q 025762 14 NKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSS-----------QPWVE--KYRPKQVKDVAHQEEVVRVLTNTLET- 79 (248)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~~g~~~~~~~l~~~l~~- 79 (248)
...|++.+.++.-.+.|.......++-+..+.... ..+.. ..+...|+++.|.+++++++...+..
T Consensus 16 ~~~~sl~eyL~~vk~~p~~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ieriv~~l~~A 95 (644)
T PRK15455 16 EEEFSLQEYLELCKQDPSAYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQIVSYFRHA 95 (644)
T ss_pred cccccHHHHHHHHhcChHHHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccCcHHHHHHHHHHHHHH
Confidence 34555556665555555554444444433322111 01111 12335677899999999998887732
Q ss_pred -----CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 -----ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 -----~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...+.++|.||||+|||+||+.+++.+
T Consensus 96 a~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 96 AQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred HHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 245679999999999999999999987
No 301
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=1.8e-05 Score=74.09 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=89.0
Q ss_pred CCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
.|..-..++-.+...+.|... ...+-++|+||+|.|||+++....+... ...-+.++..+......+..+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~~-----~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGKN-----NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhCC-----CeEEEecCcccCCHHHHHHHHHH
Confidence 444555667777666666432 3445699999999999999999886541 11222333344333333333333
Q ss_pred HhHhhhhcCCC-------C---C----------CC-CCCCCceEEEEeCCCCCCHHH-HHHHHHHHhhcCCceEEEEEeC
Q 025762 136 TFAAVAVGSGQ-------R---R----------GG-YPCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 136 ~~~~~~~~~~~-------~---~----------~~-~~~~~~~vlilDEi~~l~~~~-~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.+......... . . .. ......-+|||||+|.++... ...|..++...+....+|+++.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 33211111000 0 0 00 011344689999999997444 4566677777777777888876
Q ss_pred CCcccChHHHHhhhheeeec----cCCccccchHHHHHHH
Q 025762 194 YISRCTFSALFSFLLFFMFF----SLLDQISFDKEYIRII 229 (248)
Q Consensus 194 ~~~~~~~~~l~~r~~~i~~~----~~~~~~~~~~~~~~l~ 229 (248)
....+....+.-+-..+.+. +++.+|. ...+.
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~----~~ll~ 196 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEA----QQFFD 196 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHH----HHHHH
Confidence 53333313333222234444 7788888 55554
No 302
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.37 E-value=5e-06 Score=61.06 Aligned_cols=23 Identities=48% Similarity=0.845 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 025762 85 MLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (248)
++|+||||+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 303
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=98.35 E-value=1.5e-06 Score=72.60 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC----c-chHHHHHHHHHhHhh
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD----R-GINVVRTKIKTFAAV 140 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~ 140 (248)
|+.+.+.+.+.+....+.+++++|+.|||||++.+++...+...+ ..+..+.+... . +..+++..+.--...
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~---~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~ 82 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRG---KKVLVTAPTGIAAFNIPGGRTIHSFFGIPINN 82 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcccc---ceEEEecchHHHHHhccCCcchHHhcCccccc
Confidence 455666666667667778999999999999999999999873321 12222222111 1 112222222110000
Q ss_pred hhcCC-----CCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 025762 141 AVGSG-----QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (248)
Q Consensus 141 ~~~~~-----~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~ 180 (248)
..... ...........++|||||+..++......+-..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 83 NEKSQCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred cccccccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhh
Confidence 00000 00111122345799999999999888877766554
No 304
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.35 E-value=4.1e-06 Score=60.55 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccc-----cceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-----SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
.+..+.|.||+|+||||+++.++.......+.- ..+..+. . .+....+.. .+...... +
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~-~--lS~G~~~rv--~laral~~-----------~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE-Q--LSGGEKMRL--ALAKLLLE-----------N 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc-c--CCHHHHHHH--HHHHHHhc-----------C
Confidence 455799999999999999999998763222100 0011110 0 111111111 11111111 2
Q ss_pred ceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 156 YKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 156 ~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
..++++|| ...++......+.+.+.... ..+++++...
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~ 127 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDR 127 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCH
Confidence 36999999 56788888888888887752 3466666653
No 305
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.35 E-value=3.9e-06 Score=76.21 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH----HhHhhh
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK----TFAAVA 141 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 141 (248)
.+++...+...+... ...+|+|+||||||++++++...+...+ ..+..+.++. .....+.+... ++....
T Consensus 354 s~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g---~~V~~~ApTg-~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 354 SEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAG---YRVIGAALSG-KAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCC---CeEEEEeCcH-HHHHHHHhccCCceeeHHHHH
Confidence 344555554444332 3689999999999999999988774332 2333333322 11111111100 000000
Q ss_pred hcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.. ...+.....+.++|||||+..++......|+..... ..+++|+++.
T Consensus 428 ~~--~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD 475 (744)
T TIGR02768 428 YA--WANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGD 475 (744)
T ss_pred hh--hccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 00 011112234568999999999999888888776543 3466888874
No 306
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.33 E-value=3.1e-06 Score=70.52 Aligned_cols=23 Identities=48% Similarity=0.676 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 307
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=8.4e-06 Score=70.08 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCC-ccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC-----CCCCCCC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-----RGGYPCP 154 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 154 (248)
.+..+.|+||+|+||||++..|+..+.... .....++..+.........+......+. ........ .......
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLg-v~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG-IAVHEADSAESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccC-ceeEecCcHHHHHHHHHHhc
Confidence 455799999999999999999998763221 1222233332222111111111100000 00000000 0000123
Q ss_pred CceEEEEeCCCCCCHH--HHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhh-----eeeeccCCccccchHHHHH
Q 025762 155 PYKIIILDEADSMTED--AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLL-----FFMFFSLLDQISFDKEYIR 227 (248)
Q Consensus 155 ~~~vlilDEi~~l~~~--~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~-----~i~~~~~~~~~~~~~~~~~ 227 (248)
+++++|||..+....+ ....|..+.........+|+.++....-. ..+..++. .+-|..++.... ..-
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl-~eii~~f~~~~~~gvILTKlDEt~~----lG~ 502 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDL-DEVVRRFAHAKPQGVVLTKLDETGR----FGS 502 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHH-HHHHHHHHhhCCeEEEEecCcCccc----hhH
Confidence 5789999999987543 23334333333333444566565432222 33333332 366777777665 454
Q ss_pred HHHHHhhcCcc
Q 025762 228 IIYASTLKFLE 238 (248)
Q Consensus 228 l~~~~~~~~~~ 238 (248)
+..+....+++
T Consensus 503 aLsv~~~~~LP 513 (559)
T PRK12727 503 ALSVVVDHQMP 513 (559)
T ss_pred HHHHHHHhCCC
Confidence 44555555444
No 308
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.32 E-value=8.7e-07 Score=66.20 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
-++++|+||+|||++|+.+++.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4899999999999999999999843
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=98.31 E-value=8.2e-06 Score=66.97 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=72.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc--hHHHHHHHHHhHhhhhcCCCCCC----------
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVVRTKIKTFAAVAVGSGQRRG---------- 149 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------- 149 (248)
+..++|+|++|+||||++..++..+...+ ..+..+.+...+. ...+......+............
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 34599999999999999999998874332 1233233322211 11122111111000000000000
Q ss_pred CCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCceE-EEEEeCCCcccChHHHH---hh--hheeeeccCCccccc
Q 025762 150 GYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTR-FFFICNYISRCTFSALF---SF--LLFFMFFSLLDQISF 221 (248)
Q Consensus 150 ~~~~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~~~-ii~~~n~~~~~~~~~l~---~r--~~~i~~~~~~~~~~~ 221 (248)
......+++++||.+++++ ...++.|..+.+...+... +|+.+....... .... .. +.-+-|..++....
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~-~~a~~f~~~~~~~giIlTKlD~~~~- 294 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV-EQAREFNEAVGIDGVILTKVDADAK- 294 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH-HHHHHHHhcCCCCEEEEeeecCCCC-
Confidence 0012346799999999984 5566777666654433333 333332222111 1111 11 22366777777665
Q ss_pred hHHHHHHHHHHhhcCcc
Q 025762 222 DKEYIRIIYASTLKFLE 238 (248)
Q Consensus 222 ~~~~~~l~~~~~~~~~~ 238 (248)
...+-.++...+++
T Consensus 295 ---~G~~ls~~~~~~~P 308 (336)
T PRK14974 295 ---GGAALSIAYVIGKP 308 (336)
T ss_pred ---ccHHHHHHHHHCcC
Confidence 44444444444443
No 310
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.30 E-value=2.2e-05 Score=64.08 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=84.2
Q ss_pred cccccHHHHHHHHHHHHcCC---CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHH-HHH-----
Q 025762 62 DVAHQEEVVRVLTNTLETAN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV-VRT----- 132 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~---~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 132 (248)
.+.+++.++..+...+.... +.+++|+|.+|||||.+++.+-+.. ..+.+.+++.+.-.... +..
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhccHHHHHHHHHHHh
Confidence 45688899999988876543 3357999999999999999999987 22333343332211111 111
Q ss_pred ---------------HHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC---CHHHHHHHHHHHhhcCCceE-EEEEeC
Q 025762 133 ---------------KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---TEDAQNALRRTMETYSKVTR-FFFICN 193 (248)
Q Consensus 133 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l---~~~~~~~L~~~l~~~~~~~~-ii~~~n 193 (248)
.+..+......+... -..+..-+|++|.+|.+ +....+.|+++-+-...... |+++..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~---t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAA---TNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHh---hccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 111111111111100 01133457999999887 34455666665554444433 444432
Q ss_pred CCcccChHHHHhh-----hheeeeccCCccccchHHHHHHH
Q 025762 194 YISRCTFSALFSF-----LLFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 194 ~~~~~~~~~l~~r-----~~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
... .....+ ...+.|+.|+.+++ ..++.
T Consensus 158 ~~e----~~y~~n~g~~~i~~l~fP~Ys~~e~----~~Il~ 190 (438)
T KOG2543|consen 158 SCE----KQYLINTGTLEIVVLHFPQYSVEET----QVILS 190 (438)
T ss_pred ccH----HHhhcccCCCCceEEecCCCCHHHH----HHHHh
Confidence 211 111111 23588999999999 66654
No 311
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=1.1e-05 Score=67.04 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=79.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC-------CCCCC-C
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-------RGGYP-C 153 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~ 153 (248)
+..++|+||+|+||||++..||..+... .....++..+.........+........ ........ ..... .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~RiaAvEQLk~yae~lg-ipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHhhhcC-CcEEecCCHHHHHHHHHHHHhc
Confidence 3569999999999999999999988432 2222333333222112222222111100 00000000 00000 1
Q ss_pred CCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCceE-EEEEeCCCcccChHHHHhhhh-----eeeeccCCccccchHHH
Q 025762 154 PPYKIIILDEADSMT--EDAQNALRRTMETYSKVTR-FFFICNYISRCTFSALFSFLL-----FFMFFSLLDQISFDKEY 225 (248)
Q Consensus 154 ~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~~~-ii~~~n~~~~~~~~~l~~r~~-----~i~~~~~~~~~~~~~~~ 225 (248)
.++++++||-.++.+ ......|..+++...+... +++.++....-. ..+..++. -+-|..++.... .
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~-~~i~~~F~~~~idglI~TKLDET~k----~ 393 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM-IEIITNFKDIHIDGIVFTKFDETAS----S 393 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH-HHHHHHhcCCCCCEEEEEcccCCCC----c
Confidence 136899999998876 4567778877765444333 333333222222 33444332 366777888777 6
Q ss_pred HHHHHHHhhcCcc
Q 025762 226 IRIIYASTLKFLE 238 (248)
Q Consensus 226 ~~l~~~~~~~~~~ 238 (248)
..+-.++...+++
T Consensus 394 G~iLni~~~~~lP 406 (436)
T PRK11889 394 GELLKIPAVSSAP 406 (436)
T ss_pred cHHHHHHHHHCcC
Confidence 6666666666655
No 312
>PRK04132 replication factor C small subunit; Provisional
Probab=98.27 E-value=7.8e-07 Score=80.67 Aligned_cols=51 Identities=49% Similarity=0.999 Sum_probs=47.6
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHH
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~l 98 (248)
..||.++|+|..|++++||+..++.|..++..+..+|++|.||||+||+..
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 458999999999999999999999999999999999999999999999643
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.27 E-value=8.6e-06 Score=60.21 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch---HHHH-------------HHHHHhHhhhhc
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI---NVVR-------------TKIKTFAAVAVG 143 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~~~~ 143 (248)
..+..+.|.||+|+|||||.+.++.......+ -+.++..+.... .... ...-.++...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral-- 97 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARAL-- 97 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHH--
Confidence 35568999999999999999999987632221 111221111000 0000 0000111111
Q ss_pred CCCCCCCCCCCCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCC
Q 025762 144 SGQRRGGYPCPPYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (248)
Q Consensus 144 ~~~~~~~~~~~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~ 195 (248)
..+..++++|| ...++......+.+.+.+... ...+|++|.+.
T Consensus 98 ---------~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 98 ---------ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred ---------hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 12346999999 567888888888888876643 34466666543
No 314
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.26 E-value=3.6e-05 Score=65.02 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc-chHHHHHHHHHhHhhhhcCCCCC
Q 025762 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GINVVRTKIKTFAAVAVGSGQRR 148 (248)
Q Consensus 70 ~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 148 (248)
..++.+.+..... .++|.||-+|||||+++.+.+..... .+.++..+.. ......+....+......
T Consensus 26 ~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~------~iy~~~~d~~~~~~~l~d~~~~~~~~~~~----- 93 (398)
T COG1373 26 LPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE------IIYINFDDLRLDRIELLDLLRAYIELKER----- 93 (398)
T ss_pred hHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc------eEEEEecchhcchhhHHHHHHHHHHhhcc-----
Confidence 3444444433333 79999999999999998888887322 3333333332 222222333322221111
Q ss_pred CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCC----cccChHHHHhhhheeeeccCCcccc
Q 025762 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI----SRCTFSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 149 ~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~----~~~~~~~l~~r~~~i~~~~~~~~~~ 220 (248)
+...+++||++.++. -...+..+.+.... .+++++... .... +.+..|...+.+.|++-.|.
T Consensus 94 ------~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~-~~L~GR~~~~~l~PlSF~Ef 159 (398)
T COG1373 94 ------EKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEIS-ESLAGRGKDLELYPLSFREF 159 (398)
T ss_pred ------CCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchh-hhcCCCceeEEECCCCHHHH
Confidence 246899999999863 44455555555443 456665433 3333 56666877899999999888
No 315
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.25 E-value=6.2e-06 Score=75.90 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=90.4
Q ss_pred cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc-CCCccccceEEeccCCCcchHHHHHHHHHhHhhhh
Q 025762 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (248)
+|++..++.+...+.......+-++|..|+||||||+.+-+... -....+..++..-..+.............+.....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999888878899999999999999999998874 33333444444444444444433333333322222
Q ss_pred cCCCC--------CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeecc
Q 025762 143 GSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFS 214 (248)
Q Consensus 143 ~~~~~--------~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~ 214 (248)
.+... .......++-+|++||+..=- .+..+....-.....+.+++||....--. .+. .....+....
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~-~~m-~~~~~~~v~~ 316 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCG-RAM-GVDYPIEVEC 316 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhh-ccc-cCCccccccc
Confidence 21110 001123456799999987632 24444444444445578999986422111 101 1123455555
Q ss_pred CCcccc
Q 025762 215 LLDQIS 220 (248)
Q Consensus 215 ~~~~~~ 220 (248)
++.++.
T Consensus 317 L~~~ea 322 (889)
T KOG4658|consen 317 LTPEEA 322 (889)
T ss_pred cCcccc
Confidence 556665
No 316
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.25 E-value=5.1e-07 Score=63.78 Aligned_cols=26 Identities=42% Similarity=0.678 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+|||++|-|||||||++..+|...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 46799999999999999999999876
No 317
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.21 E-value=3.3e-05 Score=57.97 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=31.5
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
+.+++++|| ...++......+.+.+........+|++|.+..
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 158 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLT 158 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 457999999 567888888888888877655555677776543
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.21 E-value=1.6e-05 Score=59.49 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCcccc---ceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCc
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS---RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
..+..+.|.||+|+|||||++.++.......+... ..+....... ....-....-.++.... .+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~-~LSgGq~qrv~laral~-----------~~p 90 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYI-DLSGGELQRVAIAAALL-----------RNA 90 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccC-CCCHHHHHHHHHHHHHh-----------cCC
Confidence 45568999999999999999999987632222100 0011111111 01111111111111111 123
Q ss_pred eEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCC
Q 025762 157 KIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNY 194 (248)
Q Consensus 157 ~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~ 194 (248)
+++++|| ...++......+.+.+..... ...+|+++.+
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 6999999 557788888888888766432 2446666654
No 319
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.20 E-value=1.9e-06 Score=60.29 Aligned_cols=22 Identities=45% Similarity=0.881 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
|+|.|+||+||||+|+.++..+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 320
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.18 E-value=1.6e-05 Score=73.63 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH----HHHhHhhhh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK----IKTFAAVAV 142 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 142 (248)
+++...+...+.... .++++|++||||||++.++...+...+ ..++.+.++.. ....+.+. ..++.....
T Consensus 349 ~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~G---~~V~~~ApTGk-AA~~L~e~tGi~a~TI~sll~ 422 (988)
T PRK13889 349 GEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAAG---YEVRGAALSGI-AAENLEGGSGIASRTIASLEH 422 (988)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEecCcHH-HHHHHhhccCcchhhHHHHHh
Confidence 444444444443332 578999999999999988776653222 23333333211 11111110 000000000
Q ss_pred cCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 143 ~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.+ ..+.......+||||||+..++......|++.... ..+++|+++.
T Consensus 423 ~~--~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD 469 (988)
T PRK13889 423 GW--GQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGD 469 (988)
T ss_pred hh--cccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECC
Confidence 00 01122234567999999999999988888776654 3467888885
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=4.3e-05 Score=56.93 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=31.6
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
+.+++++|| ...++......+.+++........++++|.+..
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 156 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 347999999 667888888888888887655555677776543
No 322
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=98.16 E-value=3.3e-06 Score=64.16 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=67.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDE 163 (248)
.++|.|+.|+|||+..+.|+....... + ......+........ -++.+||
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~~~~d~--------~--~~~~~kd~~~~l~~~--------------------~iveldE 103 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPEYFSDS--------I--NDFDDKDFLEQLQGK--------------------WIVELDE 103 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHHhccCc--------c--ccCCCcHHHHHHHHh--------------------HheeHHH
Confidence 389999999999999999976632111 1 111112222222221 3788999
Q ss_pred CCCCCHHHHHHHHHHHhhc---------------CCceEEEEEeCCCcccChHHHHhhhheeeecc
Q 025762 164 ADSMTEDAQNALRRTMETY---------------SKVTRFFFICNYISRCTFSALFSFLLFFMFFS 214 (248)
Q Consensus 164 i~~l~~~~~~~L~~~l~~~---------------~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~ 214 (248)
++.+.....+.|..++... +..+++|.+||...-+.+++=-+|+..+.+..
T Consensus 104 l~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 104 LDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred HhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 9999988888888888432 24556888899877666355556777777776
No 323
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=98.16 E-value=4.4e-05 Score=62.85 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 69 ~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
....|..++.... +++++|++|+||||+++++...+
T Consensus 149 ~~~~L~~~v~~~~--nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 149 IKEFLEHAVISKK--NIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHHcCC--cEEEECCCCCCHHHHHHHHHhhC
Confidence 3344444454444 89999999999999999999887
No 324
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.15 E-value=4.1e-05 Score=58.52 Aligned_cols=49 Identities=29% Similarity=0.342 Sum_probs=33.9
Q ss_pred HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC--CccccceEEecc
Q 025762 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP--ELYKSRVLELNA 121 (248)
Q Consensus 73 l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~--~~~~~~~~~~~~ 121 (248)
+...+....-.|.++.|||||||||+.+-+++.+... ++....+..++.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDe 178 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDE 178 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEec
Confidence 4445555555689999999999999999999988322 233444444444
No 325
>PRK14532 adenylate kinase; Provisional
Probab=98.14 E-value=6.8e-05 Score=56.75 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.||||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 326
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=1.5e-05 Score=66.87 Aligned_cols=147 Identities=13% Similarity=0.086 Sum_probs=74.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC-------CCCCCCCC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-------RGGYPCPP 155 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 155 (248)
..++|+||+|+||||++..++.......+....++..+. .+... . ..+..+.......... ........
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt--~R~aA-~-eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~ 299 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN--YRIAA-I-EQLKRYADTMGMPFYPVKDIKKFKETLARDG 299 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc--hhhhH-H-HHHHHHHHhcCCCeeehHHHHHHHHHHHhCC
Confidence 348899999999999999999765222222222232222 11111 0 1111111110000000 00001235
Q ss_pred ceEEEEeCCCCCC--HHHHHHHHHHHhhc----CCceEEEEEeCCCcccChHHHHhhhh-----eeeeccCCccccchHH
Q 025762 156 YKIIILDEADSMT--EDAQNALRRTMETY----SKVTRFFFICNYISRCTFSALFSFLL-----FFMFFSLLDQISFDKE 224 (248)
Q Consensus 156 ~~vlilDEi~~l~--~~~~~~L~~~l~~~----~~~~~ii~~~n~~~~~~~~~l~~r~~-----~i~~~~~~~~~~~~~~ 224 (248)
+++++||=.++.+ ....+.|..+++.. +....+|+.++....-. ..+..++. .+-|..++...-
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~~~glIlTKLDEt~~---- 374 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLNYRRILLTKLDEADF---- 374 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCCCCEEEEEcccCCCC----
Confidence 6899999887764 55666777666542 22344555555443333 34444332 366777777666
Q ss_pred HHHHHHHHhhcCcc
Q 025762 225 YIRIIYASTLKFLE 238 (248)
Q Consensus 225 ~~~l~~~~~~~~~~ 238 (248)
...+-.++...+++
T Consensus 375 ~G~il~i~~~~~lP 388 (432)
T PRK12724 375 LGSFLELADTYSKS 388 (432)
T ss_pred ccHHHHHHHHHCCC
Confidence 55555555555554
No 327
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.13 E-value=6.9e-05 Score=55.93 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=29.8
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~ 195 (248)
+.+++++|| ...++......+.+++..... ...+|++|.+.
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 457999999 567888888888888876543 34566666653
No 328
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.13 E-value=1.1e-05 Score=59.70 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=41.5
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheee
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFM 211 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~ 211 (248)
+..+|+-|| -++++++....+++++++.......|+.++....+. .....|+..++
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv-~~~~~rvl~l~ 211 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV-NRMRHRVLALE 211 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH-HhccCcEEEEe
Confidence 357999999 789999999999999999887666566655555555 56666655444
No 329
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=3e-05 Score=57.93 Aligned_cols=41 Identities=12% Similarity=0.320 Sum_probs=29.9
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCc-eEEEEEeCCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKV-TRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~-~~ii~~~n~~ 195 (248)
+..++++|| ...++......+.+++...... ..+|++|.+.
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 347999999 5677888888888888876433 4466666543
No 330
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.12 E-value=3.3e-05 Score=65.67 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
+..++|+|++|+||||++..+|..+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 446999999999999999999998853
No 331
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.10 E-value=2.2e-05 Score=59.07 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++||||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999987
No 332
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.09 E-value=4.3e-05 Score=60.99 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=25.2
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+...|++|.||+|+||||+.+.++..+.
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 34446999999999999999999999884
No 333
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=5.3e-05 Score=55.57 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc---------------hHHHHHHHHHhHhhhhcCC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---------------INVVRTKIKTFAAVAVGSG 145 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 145 (248)
.+..+.|.|++|+|||++++.++..+....+ -+.++..+... ........-.+......
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G----~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~-- 97 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSG----EILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLL-- 97 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhc--
Confidence 4557999999999999999999987632211 11122111000 00000111111111111
Q ss_pred CCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhcCCc-eEEEEEeCCC
Q 025762 146 QRRGGYPCPPYKIIILDEA-DSMTEDAQNALRRTMETYSKV-TRFFFICNYI 195 (248)
Q Consensus 146 ~~~~~~~~~~~~vlilDEi-~~l~~~~~~~L~~~l~~~~~~-~~ii~~~n~~ 195 (248)
+..++++||. ..++......+.+.+...... ..+++++...
T Consensus 98 ---------~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 98 ---------NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred ---------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 2369999995 467888888888888765433 4566666653
No 334
>PRK14528 adenylate kinase; Provisional
Probab=98.09 E-value=5.9e-05 Score=57.01 Aligned_cols=24 Identities=42% Similarity=0.855 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.||||+||||+++.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999887
No 335
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.09 E-value=7.9e-06 Score=66.09 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEE
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 160 (248)
-++.++++|+.|+|||+|.-.+.+.+.........+. .....+.+.+..+.... ...........++..||+
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh-------~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~~~~vLC 135 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFH-------RFMARVHQRLHTLQGQT-DPLPPIADELAAETRVLC 135 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCCccccccccHH-------HHHHHHHHHHHHHcCCC-CccHHHHHHHHhcCCEEE
Confidence 3457999999999999999999999833221111000 00111222222221000 000000001123457999
Q ss_pred EeCCCCCCHHHHHHHHHHHhhcC-CceEEEEEeCCCcc-----------cC--hHHHHhhhheeeeccC
Q 025762 161 LDEADSMTEDAQNALRRTMETYS-KVTRFFFICNYISR-----------CT--FSALFSFLLFFMFFSL 215 (248)
Q Consensus 161 lDEi~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~~~~-----------~~--~~~l~~r~~~i~~~~~ 215 (248)
+||+.--+....-.|-.+++..- ..+.+|.|||.... .. .+.|.++|.++.+..+
T Consensus 136 fDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 136 FDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred eeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 99977665443333444444332 34557777773211 11 1345567776666555
No 336
>PTZ00202 tuzin; Provisional
Probab=98.09 E-value=3.8e-05 Score=64.48 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=41.8
Q ss_pred CCCccccccccHHHHHHHHHHHHcCC---CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLETAN---CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~~---~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
-|....+++|++.....|...+.... ..-+.|+|++|+|||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34567788999999999988886432 2358999999999999999999887
No 337
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=98.08 E-value=0.0001 Score=59.93 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.....|..++... .+++++|++|+||||+++++...+
T Consensus 119 ~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 119 AAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHh
Confidence 34455666666544 489999999999999999999886
No 338
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.07 E-value=0.00041 Score=57.18 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=43.8
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhcC--CceEEEEEeCCC----------c----ccChHHHHhhhh--eeeeccCC
Q 025762 155 PYKIIILDEADSMTEDAQNALRRTMETYS--KVTRFFFICNYI----------S----RCTFSALFSFLL--FFMFFSLL 216 (248)
Q Consensus 155 ~~~vlilDEi~~l~~~~~~~L~~~l~~~~--~~~~ii~~~n~~----------~----~~~~~~l~~r~~--~i~~~~~~ 216 (248)
++-|++|||+|+++++....+++.+...- ++..+|++.+.. . .......+.++. .+.+++++
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~ 251 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPS 251 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCC
Confidence 45688999999999988777777776543 456677777521 0 011144555543 48888888
Q ss_pred cccc
Q 025762 217 DQIS 220 (248)
Q Consensus 217 ~~~~ 220 (248)
..++
T Consensus 252 ~~~~ 255 (325)
T PF07693_consen 252 PSDL 255 (325)
T ss_pred HHHH
Confidence 8888
No 339
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.07 E-value=1.7e-05 Score=57.17 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
+++.||||+||||+|+.++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999999887
No 340
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.06 E-value=8.1e-06 Score=62.89 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~ 104 (248)
...++|+|+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 34699999999999999999874
No 341
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.06 E-value=4.1e-05 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++|+||+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999999886
No 342
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.06 E-value=3.4e-05 Score=58.21 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=25.1
Q ss_pred CceEEEEeCCCCCCH-HHHHHHHHHHhhcCCceE-EEEEeCCC
Q 025762 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTR-FFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDEi~~l~~-~~~~~L~~~l~~~~~~~~-ii~~~n~~ 195 (248)
+.+++|+||+|.+.. .....+..++........ ++++++..
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~ 171 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPP 171 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCc
Confidence 456999999999986 444555555554433444 44444544
No 343
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=4.3e-05 Score=63.27 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCC-------C-C
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG-------Y-P 152 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~ 152 (248)
.+..++|+||+|+||||++..++..+... .....++..++........+......... .......... . .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~gAveQLk~yae~lgv-pv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRSGAVEQFQGYADKLDV-ELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCccHHHHHHHHhhcCCC-CEEecCCHHHHHHHHHHHHh
Confidence 34468999999999999999999887332 22333333333322222223222221110 0000000000 0 0
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCceE-EEEEeCCCcccChHHHHhhh-----heeeeccCCccccchHH
Q 025762 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTR-FFFICNYISRCTFSALFSFL-----LFFMFFSLLDQISFDKE 224 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~~~-ii~~~n~~~~~~~~~l~~r~-----~~i~~~~~~~~~~~~~~ 224 (248)
...+++++||=+++.+ ......|..+.+....... +++.++....-. ..+..++ .-+-|..++....
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~-~~i~~~f~~l~i~glI~TKLDET~~---- 357 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADV-MTILPKLAEIPIDGFIITKMDETTR---- 357 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHH-HHHHHhcCcCCCCEEEEEcccCCCC----
Confidence 1246899999998864 5556666666655443332 233222111111 2233222 2366777777766
Q ss_pred HHHHHHHHhhcCcc
Q 025762 225 YIRIIYASTLKFLE 238 (248)
Q Consensus 225 ~~~l~~~~~~~~~~ 238 (248)
..-+-.++...+++
T Consensus 358 ~G~~Lsv~~~tglP 371 (407)
T PRK12726 358 IGDLYTVMQETNLP 371 (407)
T ss_pred ccHHHHHHHHHCCC
Confidence 66666666665555
No 344
>PRK08118 topology modulation protein; Reviewed
Probab=98.04 E-value=5.4e-06 Score=61.50 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..|+|+||||+||||+|+.++..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999983
No 345
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=98.04 E-value=4.8e-05 Score=71.10 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=61.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH----HhHhhhhcCCCCCCCCCCCCce
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK----TFAAVAVGSGQRRGGYPCPPYK 157 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 157 (248)
....+++|++||||||+++.+...+...+ ..++-+.++. .....+.+... ++....... ..+........
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G---~~V~g~ApTg-kAA~~L~e~~Gi~a~TIas~ll~~--~~~~~~l~~~~ 470 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAG---YRVVGGALAG-KAAEGLEKEAGIQSRTLSSWELRW--NQGRDQLDNKT 470 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEcCcH-HHHHHHHHhhCCCeeeHHHHHhhh--ccCccCCCCCc
Confidence 34689999999999999999988763332 2334333322 11111211100 000000000 01122334567
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 158 vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
||||||+..++...+..|++.... ...++|+++.
T Consensus 471 vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD 504 (1102)
T PRK13826 471 VFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGD 504 (1102)
T ss_pred EEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 999999999999999988888764 3467888885
No 346
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.04 E-value=3.6e-05 Score=57.83 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc--chHHHHHH-------HHHhHhhh-hcCCC---C
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVRTK-------IKTFAAVA-VGSGQ---R 147 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~-~~~~~---~ 147 (248)
.+..+.|.||+|+||||+++.++.......+ -+.++..+.. ........ ...+.... ..... .
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G----~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSG----EILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4557999999999999999999987632222 1122221110 00011110 00000000 00000 0
Q ss_pred CC--------CCCCCCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCCCc
Q 025762 148 RG--------GYPCPPYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (248)
Q Consensus 148 ~~--------~~~~~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~~~ 196 (248)
.+ .....+..++++|| ...++......+.+++..... ...+|+++.+..
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 00 00123458999999 567888888888888877643 345677766533
No 347
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.03 E-value=1.6e-05 Score=62.41 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++++|+||+|||+++..++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34569999999999999999998775
No 348
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=5.2e-05 Score=56.86 Aligned_cols=40 Identities=10% Similarity=0.265 Sum_probs=29.4
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCc--eEEEEEeCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKV--TRFFFICNY 194 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~--~~ii~~~n~ 194 (248)
+..++++|| ...++...+..+.+++...... ..++++|.+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 357999999 6678888888888888765543 446666654
No 349
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.02 E-value=0.00014 Score=53.96 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccc-----cceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC----CCCC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-----SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RGGY 151 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 151 (248)
.+..+.|.||+|+|||||++.++.......+.. ..+..+..........+.+.+........+.+.. ....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999998763222100 0111111111001111222111000000000000 0000
Q ss_pred CCCCceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 152 PCPPYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 152 ~~~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
...+.+++++|| ...++......+.+++.+. ...+|++|.+.
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~ 148 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRP 148 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCCh
Confidence 123457999999 5578888888888888876 24466676653
No 350
>PF13245 AAA_19: Part of AAA domain
Probab=98.02 E-value=9.8e-06 Score=51.58 Aligned_cols=24 Identities=54% Similarity=0.797 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+++.||||||||+++...+..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 356779999999996665555555
No 351
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.01 E-value=5e-06 Score=68.83 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.3
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
.+.++..+|+||+|+|||+|++.+++....
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 457778999999999999999999998743
No 352
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.97 E-value=4.2e-05 Score=56.58 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+.++++.||+|+|||..+...+-.
T Consensus 14 ~~~~li~aptGsGKT~~~~~~~l~ 37 (169)
T PF00270_consen 14 GKNVLISAPTGSGKTLAYILPALN 37 (169)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCccHHHHHHHHHh
Confidence 358999999999999999855543
No 353
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.97 E-value=0.00028 Score=52.82 Aligned_cols=23 Identities=48% Similarity=0.881 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+++|.||||+||||+|+.|+..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999997
No 354
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.97 E-value=4.3e-05 Score=57.68 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 025762 85 MLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+++.||||+|||+++..++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988763
No 355
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.97 E-value=0.00024 Score=56.69 Aligned_cols=47 Identities=28% Similarity=0.476 Sum_probs=34.8
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+++++--.+...+.|..++.... ..++|+||+|+||||+++++...+
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhh
Confidence 45554445566666766665443 379999999999999999998876
No 356
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.97 E-value=1e-05 Score=67.27 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.5
Q ss_pred HcCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
..+.++.++|+||+|+|||++++.+++....
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 3456778999999999999999999998743
No 357
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.97 E-value=9.4e-05 Score=56.48 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
-++|+||+|+||||++.+++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999988873
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.96 E-value=0.00011 Score=54.92 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=29.1
Q ss_pred ceEEEEeC-CCCCCHHHHHHHHHHHhhcC-CceEEEEEeCCC
Q 025762 156 YKIIILDE-ADSMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (248)
Q Consensus 156 ~~vlilDE-i~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~~ 195 (248)
.+++++|| ...++......+.+.+.+.. ....+|++|.+.
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 57999999 56788888888888887653 234466776653
No 359
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.96 E-value=6.4e-05 Score=60.32 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=33.0
Q ss_pred ccccccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.++++.-.....+.+.+.+... ...+++|+|++|+||||++.++...+.
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 4444443333334444444433 334899999999999999999998873
No 360
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.96 E-value=8.7e-06 Score=78.46 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=88.0
Q ss_pred cccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhh
Q 025762 64 AHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (248)
+-.+.+.+.+....+. .+...++|.||+|+|||.++..+++.. +..+++++.-... .+++.++++....
T Consensus 420 i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~------g~~~vrinnheht---d~qeyig~y~~~~ 490 (1856)
T KOG1808|consen 420 IITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEHT---DLQEYIGTYVADD 490 (1856)
T ss_pred eccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHh------ccCceehhccccc---hHHHHHHhhhcCC
Confidence 3344444444333322 233479999999999999999999998 4455555443332 2334444332222
Q ss_pred hcCCCCC-CCC--CCCCceEEEEeCCCCCCHHHHHHHHHHHhh-cC----CceE--------EEEEe-CCC------ccc
Q 025762 142 VGSGQRR-GGY--PCPPYKIIILDEADSMTEDAQNALRRTMET-YS----KVTR--------FFFIC-NYI------SRC 198 (248)
Q Consensus 142 ~~~~~~~-~~~--~~~~~~vlilDEi~~l~~~~~~~L~~~l~~-~~----~~~~--------ii~~~-n~~------~~~ 198 (248)
.+..... +.. ..-+++.+|+||++..+.+..++|.+++++ +. +..+ .++.+ |.+ ..+
T Consensus 491 ~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~l 570 (1856)
T KOG1808|consen 491 NGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKIL 570 (1856)
T ss_pred CCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhh
Confidence 2211111 110 122457899999999999999999999987 21 1111 22333 332 223
Q ss_pred ChHHHHhhhheeeeccCCcccc
Q 025762 199 TFSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 199 ~~~~l~~r~~~i~~~~~~~~~~ 220 (248)
. +++++|+..++|....++++
T Consensus 571 s-Ra~~~rf~e~~f~~~~e~e~ 591 (1856)
T KOG1808|consen 571 S-RALRNRFIELHFDDIGEEEL 591 (1856)
T ss_pred h-hcccccchhhhhhhcCchhh
Confidence 4 77788888888887777776
No 361
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.96 E-value=8.2e-05 Score=62.18 Aligned_cols=73 Identities=7% Similarity=0.130 Sum_probs=45.8
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhc------CCceEEEEEeCCC---cccChHHHHhh-hheeeeccCCccccchHHH
Q 025762 156 YKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYI---SRCTFSALFSF-LLFFMFFSLLDQISFDKEY 225 (248)
Q Consensus 156 ~~vlilDEi~~l~~~~~~~L~~~l~~~------~~~~~ii~~~n~~---~~~~~~~l~~r-~~~i~~~~~~~~~~~~~~~ 225 (248)
+.|+|||.+..-... .+.+++.+.+. .....+||+|++. ..+. .+|.++ |..|.+...+++.. .
T Consensus 149 ~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~Ls-kaLPn~vf~tI~L~Das~~~A----k 222 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLS-KALPNRVFKTISLSDASPESA----K 222 (431)
T ss_pred CCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHH-HhCCCCceeEEeecCCCHHHH----H
Confidence 579999997665433 44555544432 2345588888653 3344 667676 44688988888888 5
Q ss_pred HHHHHHHhh
Q 025762 226 IRIIYASTL 234 (248)
Q Consensus 226 ~~l~~~~~~ 234 (248)
.++...+..
T Consensus 223 ~yV~~~L~~ 231 (431)
T PF10443_consen 223 QYVLSQLDE 231 (431)
T ss_pred HHHHHHhcc
Confidence 555554443
No 362
>PRK14531 adenylate kinase; Provisional
Probab=97.95 E-value=0.00018 Score=54.20 Aligned_cols=24 Identities=42% Similarity=0.769 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++++||||+||||+++.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999997
No 363
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.95 E-value=0.00022 Score=53.87 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++....|..++..+ .+++|.||+|+||||+++++...+
T Consensus 12 ~~~~~~l~~~v~~g--~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 12 PLQAAYLWLAVEAR--KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 44555666555554 489999999999999999999876
No 364
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.94 E-value=1.7e-05 Score=62.09 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999983
No 365
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.94 E-value=0.00014 Score=55.27 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh--cCCCcc-------------ccceEEeccC-CCcchHHHHHHHHHhHhh-hh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL--FGPELY-------------KSRVLELNAS-DDRGINVVRTKIKTFAAV-AV 142 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~--~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~ 142 (248)
..+..+.|.||+|+|||+|.+.++... ....+. ...+..+... .......+.+.+...... ..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~L 112 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccC
Confidence 355689999999999999999999876 322110 0001111111 000111111111100000 01
Q ss_pred cCCCC----CCCCCCCCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCC
Q 025762 143 GSGQR----RGGYPCPPYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (248)
Q Consensus 143 ~~~~~----~~~~~~~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~ 195 (248)
+.+.. .......+..++++|| ...++......+.+++..... ...+|+++.+.
T Consensus 113 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 11100 0001123457999999 667888888888888887643 34466666554
No 366
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.93 E-value=2.9e-05 Score=62.62 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCC-CccccceEEec
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELN 120 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~-~~~~~~~~~~~ 120 (248)
+..++|+||+|+||||++..++..+... +.....++..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3469999999999999999999887433 22333444433
No 367
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.93 E-value=2.3e-05 Score=60.26 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=34.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhcCCc--eEEEEEeCCCcccChHHHHhhhh
Q 025762 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSKV--TRFFFICNYISRCTFSALFSFLL 208 (248)
Q Consensus 154 ~~~~vlilDEi-~~l~~~~~~~L~~~l~~~~~~--~~ii~~~n~~~~~~~~~l~~r~~ 208 (248)
.+..+||+||. -.++...|..+++++.+..+. ..++++|-+...+ .-+-+|+.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v--~~~cdRi~ 213 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV--EHMCDRIA 213 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHH--HHHhhhee
Confidence 34579999994 556778888888888755433 3577887653332 34444543
No 368
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.92 E-value=7.7e-05 Score=59.11 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 025762 85 MLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (248)
|+|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999873
No 369
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.92 E-value=0.00025 Score=58.09 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.....|..++... .+++++|++|+||||++++++...
T Consensus 135 ~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 135 AAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhh
Confidence 33445555555544 489999999999999999999875
No 370
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.92 E-value=0.00018 Score=57.53 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=50.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEec-------cC---CCcchHHHHHHHHHhHhhhhcCCCCCCCCCC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN-------AS---DDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (248)
-|+|+|-||+|||++|+.|...+...+ ..+..++ .. +.......+..+.........
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~---~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls---------- 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKG---KEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS---------- 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT-----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT----------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC---CEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc----------
Confidence 489999999999999999999874321 1222221 11 112233333333333333222
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe
Q 025762 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (248)
Q Consensus 154 ~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~ 192 (248)
+..++|+|+..++ ......|+.+.....-...+|.+.
T Consensus 70 -~~~iVI~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~~ 106 (270)
T PF08433_consen 70 -KDTIVILDDNNYI-KGMRYELYCLARAYGTTFCVIYCD 106 (270)
T ss_dssp -T-SEEEE-S---S-HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred -cCeEEEEeCCchH-HHHHHHHHHHHHHcCCCEEEEEEC
Confidence 1369999999987 567888888887766555555554
No 371
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00032 Score=59.71 Aligned_cols=51 Identities=29% Similarity=0.384 Sum_probs=37.9
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~ 110 (248)
+++.+...+.....+.+++....+ -++++||+|+||||+..++...+....
T Consensus 236 ~l~~Lg~~~~~~~~~~~~~~~p~G-liLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 236 DLEKLGMSPFQLARLLRLLNRPQG-LILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred CHHHhCCCHHHHHHHHHHHhCCCe-EEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 445555556666677776665542 589999999999999999999985443
No 372
>PRK13808 adenylate kinase; Provisional
Probab=97.91 E-value=0.00025 Score=57.99 Aligned_cols=23 Identities=39% Similarity=0.803 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+|+|+||||+|||+++..|+..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 373
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.90 E-value=1.9e-05 Score=59.42 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=29.0
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNY 194 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~ 194 (248)
+..++++|| ...++......+.+++..... ...+|+++.+
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999 667888888888888876532 3446666654
No 374
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.90 E-value=0.00011 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
++|+|+||+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999986
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.90 E-value=7.5e-05 Score=55.70 Aligned_cols=25 Identities=44% Similarity=0.473 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
.++++|+||+|||+++..++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988743
No 376
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.89 E-value=1.6e-05 Score=62.08 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+.+++..++.... -.++.||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344455544443332 38999999999999888887777
No 377
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00016 Score=60.44 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=87.7
Q ss_pred cccCccchhhccCCCccc------cccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCcc--ccc
Q 025762 44 VLQSSQPWVEKYRPKQVK------DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY--KSR 115 (248)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~--~~~ 115 (248)
++...+|-..+..|--+. .+.|++.....+--.+.... .|.|+||.|+||||+...+...+.-..+. ...
T Consensus 571 ~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdS--RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh 648 (807)
T KOG0066|consen 571 SVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDS--RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH 648 (807)
T ss_pred EEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccc--eeEEECCCCccHHHHHHHHhcCCCCCcchhhccc
Confidence 444455555555443221 34567766665543333333 69999999999999999998777322111 011
Q ss_pred eEEeccC----------CCcchH-----------HHHHHHHHhHhhhhcCCCC----C---------CCCCCCCceEEEE
Q 025762 116 VLELNAS----------DDRGIN-----------VVRTKIKTFAAVAVGSGQR----R---------GGYPCPPYKIIIL 161 (248)
Q Consensus 116 ~~~~~~~----------~~~~~~-----------~~~~~~~~~~~~~~~~~~~----~---------~~~~~~~~~vlil 161 (248)
-..+..- ...... ..+..+..+.......... . ....+...+|||+
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlIL 728 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLIL 728 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEe
Confidence 1111110 001111 1112222221111111110 0 0112445689999
Q ss_pred eC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCcccc
Q 025762 162 DE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 162 DE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~ 220 (248)
|| -..++-+...+|-..++++.+. +|+++-+...+. ..-|..+.+..-+.+++
T Consensus 729 DEPTNNLDIESIDALaEAIney~Gg--Vi~VsHDeRLi~----eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 729 DEPTNNLDIESIDALAEAINEYNGG--VIMVSHDERLIV----ETDCNLWVVENQGIDEI 782 (807)
T ss_pred cCCCCCcchhhHHHHHHHHHhccCc--EEEEecccceee----ecCceEEEEccCChhhc
Confidence 99 6778889999999999998755 555555433222 22366555555554444
No 378
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.89 E-value=0.0001 Score=66.23 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHH
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~l 102 (248)
.|..++..+..-+......+.++.||+|+|||.++-..
T Consensus 239 ~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~ 276 (630)
T TIGR00643 239 AQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALA 276 (630)
T ss_pred HHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHH
Confidence 46666666666555555568999999999999987543
No 379
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.88 E-value=4.2e-05 Score=54.09 Aligned_cols=28 Identities=29% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
.+..++|.|+.|+|||++++.+++.+..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3447999999999999999999999843
No 380
>PRK14527 adenylate kinase; Provisional
Probab=97.88 E-value=0.00011 Score=55.71 Aligned_cols=27 Identities=41% Similarity=0.666 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++++||||+||||+++.++....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998873
No 381
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.88 E-value=0.00022 Score=59.18 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
...++|+||+|+||||+++++...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45799999999999999999998763
No 382
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.88 E-value=0.00016 Score=59.65 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..++.... |++++||+|+||||+++++...+
T Consensus 153 ~~l~~~v~~~~--nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 153 AFLHACVVGRL--TMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHcCC--eEEEECCCCccHHHHHHHHHccc
Confidence 34444444444 89999999999999999999886
No 383
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.87 E-value=2.1e-05 Score=58.63 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.+++|+|+||+|||++++.++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999998
No 384
>PRK02496 adk adenylate kinase; Provisional
Probab=97.86 E-value=8.6e-05 Score=55.97 Aligned_cols=23 Identities=48% Similarity=0.992 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|+||||+|||++++.++..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 385
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.86 E-value=0.00044 Score=50.34 Aligned_cols=20 Identities=45% Similarity=0.818 Sum_probs=19.1
Q ss_pred EEcCCCCcHHHHHHHHHHHh
Q 025762 87 FYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 87 l~Gp~G~GKT~la~~la~~~ 106 (248)
|.||||+|||++++.++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999997
No 386
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00017 Score=54.75 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=29.4
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 154 PPYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 154 ~~~~vlilDEi~~-l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.+..++++||-.. ++|+.....+.+|.+.......+++.+
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVT 193 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVT 193 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3468999999764 689999999999987766555444443
No 387
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.85 E-value=0.00018 Score=62.86 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 154 ~~~~vlilDEi~-~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.+.+++||||+- .++++....+++.+.+.-+...+|-++-
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 356899999964 5788899999999988655655666654
No 388
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.85 E-value=0.00021 Score=69.16 Aligned_cols=123 Identities=21% Similarity=0.217 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC-CccccceEEeccCCCcchHHHHHH---HHHhHhhhh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTK---IKTFAAVAV 142 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 142 (248)
+.+...+...+.+.. ..++|.|.+||||||+++.+...+..- ......++-+.+.. .....+.+. ..++.....
T Consensus 838 ~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTg-kAa~~L~e~Gi~A~TIasfL~ 915 (1623)
T PRK14712 838 SGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTH-RAVGEMRSAGVDAQTLASFLH 915 (1623)
T ss_pred HHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechH-HHHHHHHHhCchHhhHHHHhc
Confidence 444445554554432 379999999999999988876654210 00011233332221 111111110 000000000
Q ss_pred cCC--CCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 143 GSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 143 ~~~--~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
... .........+..|+||||+..++...+..|+..++. ..+++|+++.
T Consensus 916 ~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD 966 (1623)
T PRK14712 916 DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGD 966 (1623)
T ss_pred cccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcc
Confidence 000 001111123457999999999999999999888864 3467899985
No 389
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.85 E-value=5.5e-05 Score=57.54 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=32.3
Q ss_pred CceEEEEeCCCCCC-HHH------HHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhh
Q 025762 155 PYKIIILDEADSMT-EDA------QNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLL 208 (248)
Q Consensus 155 ~~~vlilDEi~~l~-~~~------~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~ 208 (248)
...++||||++..- ... ...+..+..-++...-++++|..+..++ +.++..+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id-~~ir~lve 138 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQID-KFIRDLVE 138 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB--HHHHCCEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHh-HHHHHHHh
Confidence 45799999998762 111 2334333345556677999999999998 88887655
No 390
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=2.3e-05 Score=58.42 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|+|+||+||||+|+.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 391
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.85 E-value=1.5e-05 Score=56.13 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
|+|.|+|||||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999995
No 392
>PLN02674 adenylate kinase
Probab=97.84 E-value=0.00026 Score=55.50 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+++|.||||+||||.++.+++.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999987
No 393
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.84 E-value=0.00023 Score=61.14 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=70.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCC-ccccceEEeccCCCcchHHHHHHHHHhHhhhhcCC---CC-----CCCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG---QR-----RGGYP 152 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~ 152 (248)
+..++|+||+|+||||++..|+..+.... .....++..+...... .+.+..+........ .. .....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA----~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGG----HEQLRIYGKILGVPVHAVKDAADLRLALSE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhH----HHHHHHHHHHhCCCeeccCCchhHHHHHHh
Confidence 34699999999999999999998763222 2222233333322111 122222221111000 00 00112
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHhhc--CCceEEEEEeCCCcccChHHHHhhh-----heeeeccCCccccchHH
Q 025762 153 CPPYKIIILDEADSMTEDA-QNALRRTMETY--SKVTRFFFICNYISRCTFSALFSFL-----LFFMFFSLLDQISFDKE 224 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~~~~-~~~L~~~l~~~--~~~~~ii~~~n~~~~~~~~~l~~r~-----~~i~~~~~~~~~~~~~~ 224 (248)
..++++++||..++...+. .......+... +....+++.++....-. ..+..++ ..+-|..++....
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l-~~i~~~f~~~~~~g~IlTKlDet~~---- 406 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTL-NEVVQAYRGPGLAGCILTKLDEAAS---- 406 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHH-HHHHHHhccCCCCEEEEeCCCCccc----
Confidence 3456799999998775432 22233333332 12233444444322222 2222222 1355667776666
Q ss_pred HHHHHHHHhhcCcc
Q 025762 225 YIRIIYASTLKFLE 238 (248)
Q Consensus 225 ~~~l~~~~~~~~~~ 238 (248)
...+..++...+++
T Consensus 407 ~G~~l~i~~~~~lP 420 (484)
T PRK06995 407 LGGALDVVIRYKLP 420 (484)
T ss_pred chHHHHHHHHHCCC
Confidence 55555555555554
No 394
>PRK06547 hypothetical protein; Provisional
Probab=97.84 E-value=3.9e-05 Score=57.08 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=27.1
Q ss_pred HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 73 l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+...+.......|+|.|++|+|||++++.++..+
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455555568899999999999999999986
No 395
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.84 E-value=0.00012 Score=63.73 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|...+.... .+++.|++|+||||=+-.+..+.
T Consensus 53 ~~~r~~il~~ve~nq--vlIviGeTGsGKSTQipQyL~ea 90 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQ--VLIVIGETGSGKSTQIPQYLAEA 90 (674)
T ss_pred HHHHHHHHHHHHHCC--EEEEEcCCCCCccccHhHHHHhc
Confidence 345567777776666 89999999999999776655554
No 396
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.84 E-value=0.00028 Score=53.58 Aligned_cols=23 Identities=43% Similarity=0.819 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+|+|+||||+|||++++.|+..+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999987
No 397
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.84 E-value=4.2e-05 Score=59.85 Aligned_cols=42 Identities=10% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceE-EEEEeCCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYSKVTR-FFFICNYI 195 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~-ii~~~n~~ 195 (248)
.+.++|++|| ...++...+..+++++.+.....+ +++++-+.
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3568999999 777888888899998887665444 44444333
No 398
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00018 Score=60.86 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..+.|+||+|+||||++..++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4469999999999999999998764
No 399
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.84 E-value=0.00055 Score=55.78 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|+||+||||+|+.+++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 58899999999999999999987
No 400
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.84 E-value=0.00046 Score=56.44 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.+++|+||+|+||||+++++...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 34599999999999999999999876
No 401
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.83 E-value=0.00017 Score=57.83 Aligned_cols=26 Identities=42% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..++|+||+|+||||++..+|..+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34588999999999999999998874
No 402
>PRK03839 putative kinase; Provisional
Probab=97.83 E-value=2.2e-05 Score=59.04 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 403
>PF14516 AAA_35: AAA-like domain
Probab=97.83 E-value=0.0005 Score=56.83 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=35.1
Q ss_pred ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
++.+..+-+.+.+.+... +..+.|.||..+|||++...+.+.+...
T Consensus 13 Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~ 58 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ 58 (331)
T ss_pred ccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC
Confidence 455665666666666552 3489999999999999999999888544
No 404
>PRK00625 shikimate kinase; Provisional
Probab=97.83 E-value=2.4e-05 Score=58.29 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+|+|+|.||+|||++++.+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999998
No 405
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.82 E-value=0.00026 Score=69.32 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC-ccccceEEeccCCC---------cchHHHHHHHH
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDD---------RGINVVRTKIK 135 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~ 135 (248)
.+.+...+...+.+. ...++|+|.+||||||+++.+...+.... .....++-+.+... ....++...+.
T Consensus 969 t~~Q~~Av~~il~s~-dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi~A~TI~s~L~ 1047 (1747)
T PRK13709 969 TSGQRAATRMILEST-DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLH 1047 (1747)
T ss_pred CHHHHHHHHHHHhCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCcchhhHHHHhc
Confidence 344445555545433 24799999999999999999988762110 00112333333221 11111111111
Q ss_pred HhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
... .....+.......+|+||||+..++......|++.+... .+++|+++.
T Consensus 1048 ~~~-----~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~--garvVLVGD 1098 (1747)
T PRK13709 1048 DTQ-----LQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAG--GGRAVSSGD 1098 (1747)
T ss_pred ccc-----cccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhcC--CCEEEEecc
Confidence 100 000011111234579999999999999999999888642 467899985
No 406
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.0002 Score=65.26 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.....+|..++.... .++|.||||+||||-+-.+..+.
T Consensus 52 ~~~~~~i~~ai~~~~--vvii~getGsGKTTqlP~~lle~ 89 (845)
T COG1643 52 TAVRDEILKAIEQNQ--VVIIVGETGSGKTTQLPQFLLEE 89 (845)
T ss_pred HHHHHHHHHHHHhCC--EEEEeCCCCCChHHHHHHHHHhh
Confidence 445567777776665 79999999999999988777766
No 407
>PRK13947 shikimate kinase; Provisional
Probab=97.82 E-value=2.5e-05 Score=58.14 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+|+|+|+||+|||++++.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999999983
No 408
>PRK14529 adenylate kinase; Provisional
Probab=97.82 E-value=0.00028 Score=54.67 Aligned_cols=26 Identities=27% Similarity=0.522 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
+++|.||||+||||+++.++..+...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~ 27 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA 27 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 58999999999999999999998433
No 409
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.81 E-value=0.00023 Score=55.63 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+++.|+||+|||+++..++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34479999999999999987766655
No 410
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.80 E-value=2.6e-05 Score=48.70 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+.|++|+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999997
No 411
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.79 E-value=0.00025 Score=56.00 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=26.6
Q ss_pred HcCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
-.+.++.++|+||+|+|||++++.+++.+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3456778999999999999999999998743
No 412
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.79 E-value=3e-05 Score=64.02 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=26.9
Q ss_pred HcCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
-.++++..+|+||+|||||++++.+++.+..
T Consensus 129 PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 129 PIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467889999999999999999999998743
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.79 E-value=0.00041 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++|+||+|+||||+++.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999998654
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.78 E-value=0.00042 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+.++|+||.|+|||++.+.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 46999999999999999999843
No 415
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00085 Score=61.36 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=97.4
Q ss_pred ccccccc-HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccceEEeccC----CCcchHHH
Q 025762 60 VKDVAHQ-EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNAS----DDRGINVV 130 (248)
Q Consensus 60 ~~~~~g~-~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~~----~~~~~~~~ 130 (248)
++.++|. ++.++++.+.+......|-+|+|.||+|||.++..+++....... ....+..++.. .......+
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 4556677 778888888887777789999999999999999999998743222 22333334332 12223334
Q ss_pred HHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhcCCceEEEEEeCC-----Ccc
Q 025762 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNY-----ISR 197 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------~~~~~L~~~l~~~~~~~~ii~~~n~-----~~~ 197 (248)
...+..+...... ...+-||+|||++.+-. +..+ ++..+-.+.+ ..+|-+|+. ...
T Consensus 265 E~rlk~l~k~v~~---------~~~gvILfigelh~lvg~g~~~~~~d~~n-lLkp~L~rg~-l~~IGatT~e~Y~k~ie 333 (898)
T KOG1051|consen 265 EERLKELLKEVES---------GGGGVILFLGELHWLVGSGSNYGAIDAAN-LLKPLLARGG-LWCIGATTLETYRKCIE 333 (898)
T ss_pred HHHHHHHHHHHhc---------CCCcEEEEecceeeeecCCCcchHHHHHH-hhHHHHhcCC-eEEEecccHHHHHHHHh
Confidence 4455544432221 11235899999998831 2233 3333333333 445555531 122
Q ss_pred cChHHHHhhhheeeeccCCccccchHHHHHHHHHHh
Q 025762 198 CTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 198 ~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
-. |++..|++.+.++-|+.++. ..++.....
T Consensus 334 kd-PalErrw~l~~v~~pS~~~~----~~iL~~l~~ 364 (898)
T KOG1051|consen 334 KD-PALERRWQLVLVPIPSVENL----SLILPGLSE 364 (898)
T ss_pred hC-cchhhCcceeEeccCcccch----hhhhhhhhh
Confidence 34 88999999999999999887 555554433
No 416
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.77 E-value=0.00044 Score=56.64 Aligned_cols=26 Identities=38% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..++|+||+|+||||++..+|..+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 44689999999999999999999884
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=97.76 E-value=0.00023 Score=60.47 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
..++++|++|+||||++..+|..+...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 348999999999999999999887433
No 418
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.76 E-value=0.0004 Score=55.42 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC----CC----CCC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RG----GYP 152 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~ 152 (248)
.+..+.|+||+|+|||+++..++..+... .....++..+.........+........ ........ .. ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~~ri~~~~ql~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHHhhhcC-ceEEecCCHHHHHHHHHHHHh
Confidence 34689999999999999999999887322 1122222222221111111211111100 00000000 00 001
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCce-EEEEEeCCCcccChHHHHhhhh-----eeeeccCCccccchHH
Q 025762 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSKVT-RFFFICNYISRCTFSALFSFLL-----FFMFFSLLDQISFDKE 224 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~~-~ii~~~n~~~~~~~~~l~~r~~-----~i~~~~~~~~~~~~~~ 224 (248)
..++++++||-.++.+ ......|..+++...+.. .+++.++....-. ..+..+|. .+-|..++...-
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~-~~~~~~f~~~~~~~~I~TKlDet~~---- 226 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM-IEIITNFKDIHIDGIVFTKFDETAS---- 226 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH-HHHHHHhCCCCCCEEEEEeecCCCC----
Confidence 1246899999999884 566777777776543332 2344333222222 23333332 366777777666
Q ss_pred HHHHHHHHhhcCcc
Q 025762 225 YIRIIYASTLKFLE 238 (248)
Q Consensus 225 ~~~l~~~~~~~~~~ 238 (248)
..-+-.++...+++
T Consensus 227 ~G~~l~~~~~~~~P 240 (270)
T PRK06731 227 SGELLKIPAVSSAP 240 (270)
T ss_pred ccHHHHHHHHHCcC
Confidence 55555555555544
No 419
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.75 E-value=0.00029 Score=61.74 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCCceEEEEeCCCCC--CHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 153 CPPYKIIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 153 ~~~~~vlilDEi~~l--~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
..++.++|+||+|.- +.+..-.|++..-.+....++|+++.
T Consensus 466 L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSA 508 (1042)
T KOG0924|consen 466 LDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSA 508 (1042)
T ss_pred hhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeec
Confidence 456889999999864 45555555555545555677777763
No 420
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.75 E-value=3e-05 Score=56.55 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++|.|||||||++..++ .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 58999999999999999999 55
No 421
>PRK06217 hypothetical protein; Validated
Probab=97.74 E-value=4e-05 Score=57.79 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
.|+|.|+||+||||+++.|+..+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5999999999999999999999843
No 422
>PF13479 AAA_24: AAA domain
Probab=97.73 E-value=2.5e-05 Score=60.37 Aligned_cols=23 Identities=48% Similarity=0.905 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
-.++|+|+||+|||+++..+-+-
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~ 26 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKP 26 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCe
Confidence 46999999999999999988333
No 423
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.73 E-value=4.1e-05 Score=55.85 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+|+++|+||+|||++++.++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 424
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00012 Score=56.38 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=29.3
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNY 194 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~ 194 (248)
+..++++|| ...++......+.+.+..... ...+|++|.+
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 187 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 457999999 567888888888888876543 3446666654
No 425
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00038 Score=53.32 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..+..+.|.||+|+|||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3555899999999999999999998864
No 426
>PRK14530 adenylate kinase; Provisional
Probab=97.72 E-value=4.6e-05 Score=59.01 Aligned_cols=25 Identities=36% Similarity=0.736 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+++++|.||||+||||+++.+++.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999998
No 427
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.72 E-value=0.00082 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
..++|+||.|+|||++.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 47999999999999999999843
No 428
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00041 Score=53.65 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=32.0
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcC---CceEEEEEeCCCcccC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYS---KVTRFFFICNYISRCT 199 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~---~~~~ii~~~n~~~~~~ 199 (248)
+..+||||| +.-++....+.|++.+++.. ....++++|-....++
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcc
Confidence 357999999 77788777777777776543 2344788887666665
No 429
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00025 Score=54.68 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
.+.+++++|| ...++......+.+.+........+|++|.+.
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~ 189 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIV 189 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 3568999999 66788888888999888765555566666543
No 430
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00018 Score=55.89 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+.-++|.||+||||||+.+-+-+...
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccC
Confidence 444699999999999999998887763
No 431
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.72 E-value=0.0008 Score=50.96 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~ 110 (248)
|+++.-++|..-+- -+.-++|.|+.|||||.|.+.++.-+...+
T Consensus 13 gndelDkrLGGGiP--~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g 56 (235)
T COG2874 13 GNDELDKRLGGGIP--VGSLILIEGDNGTGKSVLSQRFAYGFLMNG 56 (235)
T ss_pred CcHHHHhhccCCCc--cCeEEEEECCCCccHHHHHHHHHHHHHhCC
Confidence 55555555532221 223489999999999999999999885443
No 432
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.71 E-value=0.00026 Score=54.82 Aligned_cols=23 Identities=43% Similarity=0.793 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+++||||+||||+++.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 433
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.71 E-value=0.00021 Score=56.48 Aligned_cols=85 Identities=12% Similarity=-0.029 Sum_probs=48.7
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCCCcccChHHHHhhhheeee------ccCCccccchHH
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNYISRCTFSALFSFLLFFMF------FSLLDQISFDKE 224 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~~~~~~~~~l~~r~~~i~~------~~~~~~~~~~~~ 224 (248)
.+.+++++|| ...++......+.+++..... ...+|+++.+...+ ..+.+|+.++.= ..-++.++
T Consensus 132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~--~~~~d~i~~l~~~~~~~~~~~~~~~~---- 205 (246)
T cd03237 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI--DYLADRLIVFEGEPSVNGVANPPQSL---- 205 (246)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEcCCCeeEEEeCCchHH----
Confidence 3458999999 667888888888888876532 34566666543322 233344322210 11122334
Q ss_pred HHHHHHHHhhcCccccCcee
Q 025762 225 YIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~l 244 (248)
..-+...+..+++....+..
T Consensus 206 ~~~~~~~l~~~~~~~~~~~~ 225 (246)
T cd03237 206 RSGMNRFLKNLDITFRRDPE 225 (246)
T ss_pred HHHHHHHHHHCCCEEecCcc
Confidence 56667777777766554433
No 434
>PRK06696 uridine kinase; Validated
Probab=97.70 E-value=7.2e-05 Score=58.25 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHc---CCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 67 EEVVRVLTNTLET---ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 67 ~~~~~~l~~~l~~---~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+.+++.|...+.. .+...|.|.|++|+||||+|+.|+..+.
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556666666643 3444699999999999999999999984
No 435
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.70 E-value=0.0009 Score=59.29 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=33.4
Q ss_pred cccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
++++--.+.....+..++.... ..++++||+|+||||+..++.+.+.
T Consensus 295 l~~lg~~~~~~~~l~~~~~~~~-Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGFEPDQKALFLEAIHKPQ-GMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred HHHcCCCHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHhhC
Confidence 3443334555666666654433 3689999999999999999888773
No 436
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.70 E-value=0.0008 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||+|+|||||++.++...
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45579999999999999999999875
No 437
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.69 E-value=0.00014 Score=57.18 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..+.|.||.|+|||||.++++..+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 455799999999999999999999874
No 438
>PRK13949 shikimate kinase; Provisional
Probab=97.69 E-value=4.7e-05 Score=56.59 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+|+|+|+||+|||++++.+++.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 369999999999999999999998
No 439
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00041 Score=62.65 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCC-CccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCC--------CCCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--------RGGYP 152 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 152 (248)
+..+.|+||+|+||||++..++..+... +.....++..+.........+ ..+.......... .....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL----~~~a~~~gvpv~~~~~~~~l~~al~~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQL----RIYGRILGVPVHAVKDAADLRFALAA 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHH----HHHHHhCCCCccccCCHHHHHHHHHH
Confidence 3468999999999999999999876322 111222222222111111212 2211111100000 00012
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEEeCCCcccChHHHHhhh--------heeeeccCCccccc
Q 025762 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYISRCTFSALFSFL--------LFFMFFSLLDQISF 221 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~-~~~ii~~~n~~~~~~~~~l~~r~--------~~i~~~~~~~~~~~ 221 (248)
...+++++||=+++.+ ......+..+.+...+ ...+|+.++...... ..+..++ .-+-|..++...-
T Consensus 261 ~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l-~~i~~~f~~~~~~~i~glIlTKLDEt~~- 338 (767)
T PRK14723 261 LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL-NEVVHAYRHGAGEDVDGCIITKLDEATH- 338 (767)
T ss_pred hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH-HHHHHHHhhcccCCCCEEEEeccCCCCC-
Confidence 3356899999999875 3344444444433222 222344343322222 3333333 2366788888777
Q ss_pred hHHHHHHHHHHhhcCcc
Q 025762 222 DKEYIRIIYASTLKFLE 238 (248)
Q Consensus 222 ~~~~~~l~~~~~~~~~~ 238 (248)
...+-.+....+++
T Consensus 339 ---~G~iL~i~~~~~lP 352 (767)
T PRK14723 339 ---LGPALDTVIRHRLP 352 (767)
T ss_pred ---ccHHHHHHHHHCCC
Confidence 66666666666555
No 440
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.68 E-value=0.0004 Score=62.94 Aligned_cols=43 Identities=28% Similarity=0.290 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|..++..+..-+......++++.||+|+|||..+...+...
T Consensus 264 ~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~ 306 (681)
T PRK10917 264 GAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA 306 (681)
T ss_pred HHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH
Confidence 3466677777766666666789999999999999876554433
No 441
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.68 E-value=0.00024 Score=60.11 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
..++|+|++|+||||++..+|..+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999998743
No 442
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.68 E-value=4.8e-05 Score=56.91 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..++|+|+||+||||+|+.++..+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34799999999999999999999873
No 443
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.68 E-value=0.00031 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++|++|+|||++|..++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~ 23 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL 23 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999998773
No 444
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.68 E-value=0.00089 Score=49.37 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
...+|+||.|+|||++.++++-.+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999876653
No 445
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.67 E-value=0.0003 Score=56.21 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||+|+|||||++.++..+
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45579999999999999999999876
No 446
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.67 E-value=9.5e-05 Score=60.41 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.....|..++.... |++|+|++|+||||+++++...+
T Consensus 131 ~~~~~~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 131 EAQASVIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 344456666666544 89999999999999999999886
No 447
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.67 E-value=0.00038 Score=59.21 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..++++|++|+||||++..+|..+.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999998863
No 448
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.67 E-value=5e-05 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++|+|++|+||||+.+++|+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 579999999999999999999999
No 449
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.67 E-value=0.00043 Score=56.53 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=28.0
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 155 ~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
+..++||||++.+.+.. +..++.+..+.++||+++|.
T Consensus 351 ~~~FiIIDEaQNLTphe---ikTiltR~G~GsKIVl~gd~ 387 (436)
T COG1875 351 PDSFIIIDEAQNLTPHE---LKTILTRAGEGSKIVLTGDP 387 (436)
T ss_pred ccceEEEehhhccCHHH---HHHHHHhccCCCEEEEcCCH
Confidence 34699999999998765 44555566677889999873
No 450
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.66 E-value=0.0007 Score=56.41 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
...++++||+|+||||+++++.+.+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999998873
No 451
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.66 E-value=0.00047 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++++|+||+|||+++..++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34469999999999999999988765
No 452
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.66 E-value=0.00045 Score=60.37 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 72 ~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|..++.... .++|+|.+|+||||=+=...++.
T Consensus 272 ell~av~e~Q--VLiI~GeTGSGKTTQiPQyL~Ea 304 (902)
T KOG0923|consen 272 ELLKAVKEHQ--VLIIVGETGSGKTTQIPQYLYEA 304 (902)
T ss_pred HHHHHHHhCc--EEEEEcCCCCCccccccHHHHhc
Confidence 4444444444 79999999999999776666654
No 453
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00043 Score=54.43 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc--hHHHHHHHHHh-HhhhhcC---C----CCCC
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVVRTKIKTF-AAVAVGS---G----QRRG 149 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~---~----~~~~ 149 (248)
..+..+-|+|++||||||+++.+.+...-..+ -+.++..+... .....+.+..+ ....... . ...+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G----~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc----eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 45668999999999999999999998742222 12233322211 11111111111 1111000 0 0001
Q ss_pred CC---------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhcCC--ceEEEEEe
Q 025762 150 GY---------PCPPYKIIILDEA-DSMTEDAQNALRRTMETYSK--VTRFFFIC 192 (248)
Q Consensus 150 ~~---------~~~~~~vlilDEi-~~l~~~~~~~L~~~l~~~~~--~~~ii~~~ 192 (248)
+- ...+..+++.||. -.++...+..+++++.+... ...++|++
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIs 167 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFIS 167 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 10 1224579999994 45567777777877765542 33456665
No 454
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.66 E-value=0.00077 Score=67.42 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhH------
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA------ 138 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 138 (248)
-.+.+...+..++.+ ...-.+|+|++|||||++++.+...+...+ ..+.-+.++. .....+.+......
T Consensus 430 Ls~~Q~~Av~~il~s-~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G---~~V~~lAPTg-rAA~~L~e~~g~~A~Ti~~~ 504 (1960)
T TIGR02760 430 LSPSNKDAVSTLFTS-TKRFIIINGFGGTGSTEIAQLLLHLASEQG---YEIQIITAGS-LSAQELRQKIPRLASTFITW 504 (1960)
T ss_pred CCHHHHHHHHHHHhC-CCCeEEEEECCCCCHHHHHHHHHHHHHhcC---CeEEEEeCCH-HHHHHHHHHhcchhhhHHHH
Confidence 345555566555544 334799999999999999999998874432 2344443332 22222222211000
Q ss_pred -hhhhcC-------CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 139 -AVAVGS-------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 139 -~~~~~~-------~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
...... ..........+.++|||||+..++......|++..... ..++|+++.
T Consensus 505 l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~--garvVlvGD 565 (1960)
T TIGR02760 505 VKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQH--NSKLILLND 565 (1960)
T ss_pred HHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhc--CCEEEEEcC
Confidence 000000 00011112245689999999999999888888766543 366888875
No 455
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.65 E-value=0.00012 Score=56.03 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=30.0
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~~ 196 (248)
+..++++|| ...++......+.+++..... ...+|++|....
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 457999999 567888888888888876543 344666766543
No 456
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00051 Score=59.04 Aligned_cols=41 Identities=29% Similarity=0.280 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
-|+++++.+...... ....+++-|+|+|||.++..++..+.
T Consensus 40 yQ~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~~ 80 (442)
T COG1061 40 YQEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAELK 80 (442)
T ss_pred HHHHHHHHHHhhccc--CCceEEEeCCCCCHHHHHHHHHHHhc
Confidence 455555555554444 44688888999999999999999983
No 457
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.65 E-value=0.00031 Score=54.15 Aligned_cols=22 Identities=45% Similarity=0.844 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
|+|+||||+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999987
No 458
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.65 E-value=0.0012 Score=57.39 Aligned_cols=48 Identities=25% Similarity=0.397 Sum_probs=34.0
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.++++--.++..+.+..++.... ..++++||+|+||||++.++...+.
T Consensus 220 ~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 220 DLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444334556666666665443 2589999999999999998887763
No 459
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.64 E-value=5.8e-05 Score=57.01 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.+++.||||+||||+++.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999887
No 460
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.63 E-value=0.00086 Score=53.79 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+.........+...+...+-|.|+||+|||||+..+...+.
T Consensus 89 ~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 89 NRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44445566666666777899999999999999999999873
No 461
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.63 E-value=0.0019 Score=49.57 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=31.7
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
+.+++++|| ...++......+.+++........+|++|.+..
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~ 185 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLR 185 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 458999999 667788888888888887655555677776543
No 462
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.63 E-value=0.00048 Score=61.93 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=77.6
Q ss_pred CCccccccccHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~-~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (248)
|......+-++..... +..+ ..+-++|.-|.|.||||++..++..+ .......-+.++.++......++.++.
T Consensus 15 P~~~~~~v~R~rL~~~----L~~~~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 15 PVRPDNYVVRPRLLDR----LRRANDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCcccccccHHHHHH----HhcCCCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHHHH
Confidence 3334444455544444 4444 44469999999999999999998733 222233333444455444444444443
Q ss_pred HhHhhhhcCCC-------CCCCC--------------CCCCceEEEEeCCCCCCHH-HHHHHHHHHhhcCCceEEEEEeC
Q 025762 136 TFAAVAVGSGQ-------RRGGY--------------PCPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 136 ~~~~~~~~~~~-------~~~~~--------------~~~~~~vlilDEi~~l~~~-~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.+.......+. ..... ...+.-.+||||.|.++.. ....+-.+++..+++..+|++|.
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 33322111110 00000 1112248999999999754 45567777788888888999986
Q ss_pred CCccc
Q 025762 194 YISRC 198 (248)
Q Consensus 194 ~~~~~ 198 (248)
....+
T Consensus 169 ~rP~l 173 (894)
T COG2909 169 SRPQL 173 (894)
T ss_pred cCCCC
Confidence 54443
No 463
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.63 E-value=0.00079 Score=64.19 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
......|...+.... .++++|+||+||||.+=.+..+.
T Consensus 69 ~~~~~~Il~~l~~~~--vvii~g~TGSGKTTqlPq~lle~ 106 (1283)
T TIGR01967 69 SAKREDIAEAIAENQ--VVIIAGETGSGKTTQLPKICLEL 106 (1283)
T ss_pred HHHHHHHHHHHHhCc--eEEEeCCCCCCcHHHHHHHHHHc
Confidence 344466777776554 79999999999999887666654
No 464
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.62 E-value=0.00012 Score=59.84 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=38.8
Q ss_pred cccccHHHHHHHHHHHHcC------CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 62 DVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~------~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++.|.++.+.+|...++.+ +.+.++|.||+|+|||++++.+.+.+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999998887654 34469999999999999999999887
No 465
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.62 E-value=0.00088 Score=50.20 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=27.8
Q ss_pred ceEEEEeCCC-CCCHHHHHHHHHHHhhcCCc-eEEEEEeCCC
Q 025762 156 YKIIILDEAD-SMTEDAQNALRRTMETYSKV-TRFFFICNYI 195 (248)
Q Consensus 156 ~~vlilDEi~-~l~~~~~~~L~~~l~~~~~~-~~ii~~~n~~ 195 (248)
.+++++||.+ .++......+.+.+...... ..+|+++...
T Consensus 117 p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 117 SPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3699999965 57777777777777665333 4577777653
No 466
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.62 E-value=4.2e-05 Score=56.48 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999997
No 467
>PRK10436 hypothetical protein; Provisional
Probab=97.61 E-value=0.0014 Score=56.39 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=32.9
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.++++--.+.....+..++.... ..++++||+|+||||+..++...+.
T Consensus 196 ~L~~LG~~~~~~~~l~~~~~~~~-GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 196 DLETLGMTPAQLAQFRQALQQPQ-GLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CHHHcCcCHHHHHHHHHHHHhcC-CeEEEECCCCCChHHHHHHHHHhhC
Confidence 33443334455556666554433 3799999999999999998888763
No 468
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.60 E-value=0.00014 Score=59.82 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=61.8
Q ss_pred HHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCC
Q 025762 71 RVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (248)
Q Consensus 71 ~~l~~~l~~-~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (248)
..+..++.. ....-++|+|||+||||..+..+.+.+. ..++....+.... -++.
T Consensus 250 ~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~------GkViSf~Ns~ShF------WLqP------------- 304 (432)
T PF00519_consen 250 IALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK------GKVISFVNSKSHF------WLQP------------- 304 (432)
T ss_dssp HHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHT------SEEE-GGGTTSCG------GGGG-------------
T ss_pred HHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhC------CEEEEecCCCCcc------cccc-------------
Confidence 344444443 2344599999999999999999999982 2333221111100 0000
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHH-HHHHHhhcC-------------CceEEEEEeCCCcccC--hHHHHhhhheeeec
Q 025762 150 GYPCPPYKIIILDEADSMTEDAQNA-LRRTMETYS-------------KVTRFFFICNYISRCT--FSALFSFLLFFMFF 213 (248)
Q Consensus 150 ~~~~~~~~vlilDEi~~l~~~~~~~-L~~~l~~~~-------------~~~~ii~~~n~~~~~~--~~~l~~r~~~i~~~ 213 (248)
....++.+|||+..--=+-.+. |.++++..+ ....+++|||..-.-. ..-|.||...+.|+
T Consensus 305 ---L~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~ 381 (432)
T PF00519_consen 305 ---LADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFP 381 (432)
T ss_dssp ---GCT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--
T ss_pred ---hhcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcC
Confidence 1123589999987643222222 445554322 1123788888422211 16778898888887
Q ss_pred cCCc
Q 025762 214 SLLD 217 (248)
Q Consensus 214 ~~~~ 217 (248)
.+-+
T Consensus 382 n~~P 385 (432)
T PF00519_consen 382 NPFP 385 (432)
T ss_dssp S-S-
T ss_pred Cccc
Confidence 5543
No 469
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.60 E-value=0.00098 Score=55.69 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..++++||+|+||||++.++...+.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999988873
No 470
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00095 Score=50.68 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=34.5
Q ss_pred CccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++-+.|.+.+++.+. +........-|.||+||||||+.+.+-+..
T Consensus 11 ~~l~~yYg~~~aL~~i~--l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 11 RDLNLYYGDKHALKDIN--LDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cceeEEECchhhhccCc--eeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 35555677777766665 223344468899999999999999998775
No 471
>PRK06762 hypothetical protein; Provisional
Probab=97.59 E-value=6.4e-05 Score=55.65 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
-++|+|+||+||||+|+.++..+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 472
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.58 E-value=0.00039 Score=57.65 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=29.0
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICN 193 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n 193 (248)
+..++++|| ...+++..+..+.+++.+... ...+|++|-
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH 230 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 458999999 677888888888888877543 334566654
No 473
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.58 E-value=0.0041 Score=45.31 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=49.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch---HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEe
Q 025762 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI---NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (248)
Q Consensus 86 ll~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilD 162 (248)
+=.+.+||||||++.+|.+.+.. .-.+...+..+. ..+...+..+.. ....++|.|
T Consensus 3 vPIAtiGCGKTTva~aL~~LFg~-------wgHvQnDnI~~k~~~~f~~~~l~~L~~--------------~~~~vViaD 61 (168)
T PF08303_consen 3 VPIATIGCGKTTVALALSNLFGE-------WGHVQNDNITGKRKPKFIKAVLELLAK--------------DTHPVVIAD 61 (168)
T ss_pred eeecCCCcCHHHHHHHHHHHcCC-------CCccccCCCCCCCHHHHHHHHHHHHhh--------------CCCCEEEEe
Confidence 44688999999999999999831 111223332221 222222322211 123589999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC-------ceEEEEEe
Q 025762 163 EADSMTEDAQNALRRTMETYSK-------VTRFFFIC 192 (248)
Q Consensus 163 Ei~~l~~~~~~~L~~~l~~~~~-------~~~ii~~~ 192 (248)
=-+... .-...|+..++.... ..++|...
T Consensus 62 RNNh~~-reR~ql~~~~~~~~~~yl~~~~~~r~VaL~ 97 (168)
T PF08303_consen 62 RNNHQK-RERKQLFEDVSQLKPDYLPYDTNVRFVALN 97 (168)
T ss_pred CCCchH-HHHHHHHHHHHHhcccccccCCCeEEEEEE
Confidence 777664 445666766666554 66666665
No 474
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.58 E-value=0.0013 Score=50.37 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIA 103 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la 103 (248)
.++|+||.|+|||++.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999988
No 475
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.58 E-value=0.00038 Score=61.38 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|+||+|+||||+++.+....
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999999876
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.58 E-value=0.00055 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++++|++|+||||+++.++..+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999987
No 477
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.58 E-value=0.0011 Score=51.01 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
+..+.|+||||+|||+++..++...... ...++.++...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 4469999999999999999998876433 23455555543
No 478
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.58 E-value=0.00047 Score=60.06 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEE
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 160 (248)
...-++++|+||+||||+|+.++... ....++...... ....... ....... +.=+|
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~--------g~~~vn~D~lg~---~~~~~~~-a~~~L~~-----------G~sVV 424 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPA--------GYKHVNADTLGS---TQNCLTA-CERALDQ-----------GKRCA 424 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHc--------CCeEECcHHHHH---HHHHHHH-HHHHHhC-----------CCcEE
Confidence 34459999999999999999999875 122333322211 1111111 1111111 12356
Q ss_pred EeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 161 lDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
||.-. +.......+..+.....-...++....
T Consensus 425 IDaTn-~~~~~R~~~i~lAk~~gv~v~~i~~~~ 456 (526)
T TIGR01663 425 IDNTN-PDAASRAKFLQCARAAGIPCRCFLFNA 456 (526)
T ss_pred EECCC-CCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 67655 466677778888777655555554443
No 479
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.57 E-value=0.00093 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++.++|+|..|||||+|.-.+...+
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcC
Confidence 4569999999999999999888776
No 480
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.57 E-value=0.00065 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++..+-|.||+|+|||++.+.+...+
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 455689999999999999999999887
No 481
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.57 E-value=0.00049 Score=53.22 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+|||||++.++...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999999875
No 482
>PRK08233 hypothetical protein; Provisional
Probab=97.57 E-value=6.3e-05 Score=56.48 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
-|.|.|+||+||||+|..++..+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578899999999999999999883
No 483
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.57 E-value=0.00095 Score=63.56 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.....|..++..+. .++++|++||||||.+=.+...+
T Consensus 77 ~~r~~Il~ai~~~~--VviI~GeTGSGKTTqlPq~lle~ 113 (1294)
T PRK11131 77 QKKQDILEAIRDHQ--VVIVAGETGSGKTTQLPKICLEL 113 (1294)
T ss_pred HHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHc
Confidence 34456666665554 79999999999999766555554
No 484
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.56 E-value=0.00012 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+|+|.|++|+|||++++.++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3479999999999999999999987
No 485
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.56 E-value=0.00023 Score=55.41 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=30.7
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~~ 196 (248)
+.+++++|| ...++......+.+++.+... ...+|++|.+..
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 458999999 677888888888888877643 344666666533
No 486
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00034 Score=55.63 Aligned_cols=49 Identities=27% Similarity=0.278 Sum_probs=38.3
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (248)
.++.+.+-|+|+||+||||+..++...+ ...++..-++-++++...+..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGG 96 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGG 96 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCc
Confidence 3455569999999999999999999999 455556778888887654433
No 487
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.56 E-value=0.00038 Score=56.79 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=28.5
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICN 193 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n 193 (248)
+..+|++|| ...+++.....+.+++..... ...+|++|-
T Consensus 142 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH 182 (302)
T TIGR01188 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182 (302)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 458999999 677888888888888876543 334566654
No 488
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=0.0017 Score=50.83 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=32.0
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
+.+++++|| ...++......+.+.+........+|++|.+..
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 198 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLS 198 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 457999999 677888888888888887655555777776543
No 489
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.56 E-value=0.0096 Score=45.51 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
...++|.|++|+|||++...+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 457999999999999999998876
No 490
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.56 E-value=0.00042 Score=56.64 Aligned_cols=40 Identities=10% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICN 193 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n 193 (248)
.+..++++|| ...+++.....+.+++.+... ...++++|.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH 196 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3458999999 667888888888888877543 344666664
No 491
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.0004 Score=51.92 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.+.||+||||||+...+|...
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 44579999999999999999999876
No 492
>PRK13948 shikimate kinase; Provisional
Probab=97.55 E-value=0.00012 Score=54.88 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...+|+|+|.+|+|||++++.+++.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999999998
No 493
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.55 E-value=9.9e-05 Score=55.22 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+|++|+||||+++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455799999999999999999999884
No 494
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.55 E-value=0.00051 Score=56.02 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=29.8
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
+..++++|| ...+++.....+.+.+........+|++|.
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH 190 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTH 190 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 458999999 667888888888888887655555666664
No 495
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.55 E-value=0.00044 Score=53.90 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=29.1
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCc-eEEEEEeCCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKV-TRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~-~~ii~~~n~~ 195 (248)
+.+++++|| ...++......+.+.+...... ..+|++|.+.
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~ 202 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP 202 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 458999999 5678888888888888765332 4466666553
No 496
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.54 E-value=0.002 Score=48.65 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 025762 85 MLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~ 105 (248)
++|+||.|.|||++.+.++..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999843
No 497
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.54 E-value=8.7e-05 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.++|+||+|+||||+++.++..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999873
No 498
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.54 E-value=0.00041 Score=58.52 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEE
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 160 (248)
+.-|++=.||.|||||++=+.+.... +.+.++..+... ++-..... ..|. .+..++++
T Consensus 207 ~N~NliELgPrGTGKS~vy~eiSp~~----------~liSGG~~T~A~----LFyn~~~~------~~Gl--V~~~D~Va 264 (457)
T PF13337_consen 207 RNYNLIELGPRGTGKSYVYKEISPYG----------ILISGGQVTVAK----LFYNMSTG------QIGL--VGRWDVVA 264 (457)
T ss_pred cccceEEEcCCCCCceeehhhcCccc----------EEEECCCcchHH----heeeccCC------ccee--eeeccEEE
Confidence 44589999999999999866554432 222222221111 11111000 1111 12357999
Q ss_pred EeCCCCCC---HHHHHHHHHHHhhcC---------CceEEEEEeCCCcc-------------cC----hHHHHhhhhe--
Q 025762 161 LDEADSMT---EDAQNALRRTMETYS---------KVTRFFFICNYISR-------------CT----FSALFSFLLF-- 209 (248)
Q Consensus 161 lDEi~~l~---~~~~~~L~~~l~~~~---------~~~~ii~~~n~~~~-------------~~----~~~l~~r~~~-- 209 (248)
+||+..+. ++..+.|...|+.+. ..+++|+.+|.... ++ +.|+++|+..
T Consensus 265 fDEv~~i~f~d~d~i~imK~YMesG~fsRG~~~i~a~as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~i 344 (457)
T PF13337_consen 265 FDEVAGIKFKDKDEIQIMKDYMESGSFSRGKEEINADASMVFVGNINQSVENMLKTSHLFEPLPEEMRDSAFLDRIHGYI 344 (457)
T ss_pred EEeccCcccCChHHHHHHHHHHhccceeecccccccceeEEEEcCcCCcchhccccchhhhhcCHHHHHHHHHhHhheec
Confidence 99998874 566677888887643 45669999984322 11 3677777653
Q ss_pred --eeeccCCc
Q 025762 210 --FMFFSLLD 217 (248)
Q Consensus 210 --i~~~~~~~ 217 (248)
+.++...+
T Consensus 345 PGWeiPk~~~ 354 (457)
T PF13337_consen 345 PGWEIPKIRP 354 (457)
T ss_pred cCccccccCH
Confidence 45555554
No 499
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.54 E-value=0.0001 Score=53.19 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 025762 85 MLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (248)
++|.|+||+|||++|+.++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999988
No 500
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.54 E-value=0.00051 Score=56.14 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHHHHcC------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhH
Q 025762 65 HQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (248)
++++....+.+++... ...-++++|+.|+|||+++..+...+. ... .....+. .+.+ +.
T Consensus 53 ~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G-~~~-----~~~~~~~-----~~~~----~~ 117 (304)
T TIGR01613 53 GDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLG-DYA-----TTAVASL-----KMNE----FQ 117 (304)
T ss_pred CCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhC-hhh-----ccCCcch-----hhhh----cc
Confidence 3445565565554321 122389999999999999998877762 111 0000000 0000 00
Q ss_pred hhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc--------------CCceEEEEEeCCCcccC--hHH
Q 025762 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYISRCT--FSA 202 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~--------------~~~~~ii~~~n~~~~~~--~~~ 202 (248)
.. . ........+.+++.||++.-.....+.|..+.... .....+|++||....+. ..+
T Consensus 118 ~~----~--f~~a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a 191 (304)
T TIGR01613 118 EH----R--FGLARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGG 191 (304)
T ss_pred CC----C--chhhhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChh
Confidence 00 0 00001122468999998753322334555555311 13445899999765553 267
Q ss_pred HHhhhheeeecc
Q 025762 203 LFSFLLFFMFFS 214 (248)
Q Consensus 203 l~~r~~~i~~~~ 214 (248)
+.+|+.++.|..
T Consensus 192 ~~RR~~vi~f~~ 203 (304)
T TIGR01613 192 IKRRLRIIPFTK 203 (304)
T ss_pred heeeEEEEeccC
Confidence 888988887753
Done!