Query 025762
Match_columns 248
No_of_seqs 203 out of 2125
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:03:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 99.9 5.3E-26 1.8E-30 187.0 16.3 183 48-244 12-194 (340)
2 1iqp_A RFCS; clamp loader, ext 99.9 9.5E-26 3.2E-30 184.3 13.2 186 46-245 10-195 (327)
3 1sxj_D Activator 1 41 kDa subu 99.9 8.3E-26 2.8E-30 186.6 12.6 195 46-245 22-218 (353)
4 2chg_A Replication factor C sm 99.9 2.7E-24 9.3E-29 166.0 18.5 184 47-244 3-186 (226)
5 3u61_B DNA polymerase accessor 99.9 1E-24 3.4E-29 178.2 16.9 183 46-245 11-199 (324)
6 2chq_A Replication factor C sm 99.9 1.2E-25 4.3E-30 183.0 11.3 184 48-245 4-187 (319)
7 1sxj_E Activator 1 40 kDa subu 99.9 1.4E-24 4.8E-29 179.4 16.4 189 50-244 3-219 (354)
8 1sxj_B Activator 1 37 kDa subu 99.9 1E-24 3.5E-29 177.8 14.6 185 47-244 7-191 (323)
9 1jr3_A DNA polymerase III subu 99.9 3E-23 1E-27 172.5 15.8 182 48-244 3-203 (373)
10 3pvs_A Replication-associated 99.9 3.9E-23 1.3E-27 174.8 14.7 162 49-234 14-180 (447)
11 1njg_A DNA polymerase III subu 99.9 4.6E-22 1.6E-26 155.4 17.2 182 47-243 9-209 (250)
12 3pfi_A Holliday junction ATP-d 99.9 3.8E-22 1.3E-26 163.8 16.4 171 47-244 15-209 (338)
13 1sxj_A Activator 1 95 kDa subu 99.9 5.2E-22 1.8E-26 171.5 14.9 187 46-245 24-235 (516)
14 2gno_A DNA polymerase III, gam 99.9 2E-21 7E-26 156.5 15.2 150 65-232 1-152 (305)
15 1a5t_A Delta prime, HOLB; zinc 99.9 7.7E-21 2.6E-25 155.7 17.0 154 64-232 5-180 (334)
16 1hqc_A RUVB; extended AAA-ATPa 99.9 5.3E-21 1.8E-25 156.1 13.2 167 52-244 3-193 (324)
17 3vfd_A Spastin; ATPase, microt 99.8 5.3E-20 1.8E-24 153.8 15.6 173 49-242 103-305 (389)
18 3eie_A Vacuolar protein sortin 99.8 5.6E-20 1.9E-24 149.9 14.2 171 50-241 7-206 (322)
19 3uk6_A RUVB-like 2; hexameric 99.8 8.2E-20 2.8E-24 151.6 14.7 183 48-245 30-285 (368)
20 4b4t_J 26S protease regulatory 99.8 4.5E-19 1.5E-23 146.1 18.3 159 55-238 142-338 (405)
21 3syl_A Protein CBBX; photosynt 99.8 4.2E-20 1.4E-24 149.8 10.9 165 62-244 32-229 (309)
22 3b9p_A CG5977-PA, isoform A; A 99.8 7.2E-19 2.5E-23 141.7 17.2 168 50-242 10-212 (297)
23 3d8b_A Fidgetin-like protein 1 99.8 5.4E-19 1.8E-23 146.0 14.8 170 52-242 75-274 (357)
24 2qp9_X Vacuolar protein sortin 99.8 4.1E-19 1.4E-23 146.5 13.9 165 51-240 41-238 (355)
25 3h4m_A Proteasome-activating n 99.8 1.1E-18 3.9E-23 139.7 16.2 162 56-238 12-207 (285)
26 1xwi_A SKD1 protein; VPS4B, AA 99.8 2E-18 7E-23 140.5 15.9 162 55-240 6-200 (322)
27 1in4_A RUVB, holliday junction 99.8 2.6E-18 8.8E-23 140.7 16.0 172 46-244 10-205 (334)
28 4b4t_I 26S protease regulatory 99.8 2.6E-18 8.9E-23 142.1 16.0 159 55-238 176-372 (437)
29 4b4t_M 26S protease regulatory 99.8 1.2E-18 4.1E-23 145.6 14.1 159 55-238 175-371 (434)
30 4b4t_H 26S protease regulatory 99.8 4.3E-18 1.5E-22 142.1 17.1 156 58-238 206-399 (467)
31 4b4t_L 26S protease subunit RP 99.8 4.8E-18 1.6E-22 142.1 17.1 156 57-237 177-370 (437)
32 2qz4_A Paraplegin; AAA+, SPG7, 99.8 6.1E-18 2.1E-22 133.8 16.5 162 58-240 3-198 (262)
33 2c9o_A RUVB-like 1; hexameric 99.8 5.7E-18 2E-22 144.2 16.9 82 157-244 297-391 (456)
34 3cf0_A Transitional endoplasmi 99.8 4.2E-18 1.4E-22 137.5 15.1 160 54-238 8-205 (301)
35 2r44_A Uncharacterized protein 99.8 5E-19 1.7E-23 144.9 9.8 168 49-235 15-201 (331)
36 3bos_A Putative DNA replicatio 99.8 2.1E-18 7.3E-23 134.5 12.4 172 48-245 14-200 (242)
37 4fcw_A Chaperone protein CLPB; 99.8 3.1E-18 1.1E-22 138.9 13.7 163 61-234 17-231 (311)
38 1jbk_A CLPB protein; beta barr 99.8 1E-18 3.5E-23 131.5 10.1 161 48-220 9-190 (195)
39 2zan_A Vacuolar protein sortin 99.8 3.1E-18 1.1E-22 145.2 14.2 165 52-240 125-322 (444)
40 4b4t_K 26S protease regulatory 99.8 1.1E-17 3.8E-22 139.6 16.7 157 57-238 168-363 (428)
41 2p65_A Hypothetical protein PF 99.8 1.8E-18 6E-23 129.6 9.4 159 46-216 7-187 (187)
42 3pxg_A Negative regulator of g 99.8 1.5E-18 5E-23 148.1 9.6 173 46-243 165-353 (468)
43 1lv7_A FTSH; alpha/beta domain 99.8 1.7E-17 5.9E-22 130.9 14.2 162 51-237 2-200 (257)
44 1ofh_A ATP-dependent HSL prote 99.8 8E-18 2.7E-22 136.2 12.5 148 61-229 15-212 (310)
45 2bjv_A PSP operon transcriptio 99.7 7.5E-18 2.6E-22 133.6 11.4 175 59-237 4-203 (265)
46 3m6a_A ATP-dependent protease 99.7 4.1E-18 1.4E-22 147.7 9.3 162 60-232 80-266 (543)
47 1fnn_A CDC6P, cell division co 99.7 1.7E-16 5.6E-21 132.4 17.6 179 46-234 5-208 (389)
48 2v1u_A Cell division control p 99.7 4.9E-17 1.7E-21 135.4 13.8 181 46-234 7-216 (387)
49 3hu3_A Transitional endoplasmi 99.7 8.2E-17 2.8E-21 137.5 14.1 163 55-238 198-391 (489)
50 1g8p_A Magnesium-chelatase 38 99.7 9.7E-18 3.3E-22 138.1 8.1 161 55-220 18-223 (350)
51 3n70_A Transport activator; si 99.7 5.6E-17 1.9E-21 116.9 11.1 132 62-215 2-144 (145)
52 1l8q_A Chromosomal replication 99.7 6.7E-17 2.3E-21 131.8 11.8 171 58-246 8-193 (324)
53 2ce7_A Cell division protein F 99.7 3.6E-16 1.2E-20 132.5 16.2 157 57-238 12-205 (476)
54 3pxi_A Negative regulator of g 99.7 8.4E-17 2.9E-21 145.1 13.1 152 61-233 491-676 (758)
55 1r6b_X CLPA protein; AAA+, N-t 99.7 9.6E-17 3.3E-21 144.8 13.3 152 61-233 458-667 (758)
56 2z4s_A Chromosomal replication 99.7 1E-16 3.4E-21 135.7 11.7 174 59-246 103-290 (440)
57 1ojl_A Transcriptional regulat 99.7 2.4E-16 8.2E-21 127.2 13.3 169 62-236 3-198 (304)
58 1qvr_A CLPB protein; coiled co 99.7 4.9E-17 1.7E-21 148.2 9.8 185 47-243 156-360 (854)
59 3te6_A Regulatory protein SIR3 99.7 1.2E-16 4.2E-21 128.6 11.0 165 63-234 22-213 (318)
60 3pxi_A Negative regulator of g 99.7 5.8E-17 2E-21 146.1 9.6 164 46-234 165-340 (758)
61 1um8_A ATP-dependent CLP prote 99.7 1.5E-16 5E-21 132.4 11.1 151 62-229 22-283 (376)
62 2r62_A Cell division protease 99.7 9.4E-18 3.2E-22 133.2 2.6 158 55-237 5-201 (268)
63 1r6b_X CLPA protein; AAA+, N-t 99.7 1.6E-16 5.5E-21 143.3 10.1 180 46-242 171-376 (758)
64 3co5_A Putative two-component 99.7 1.9E-16 6.5E-21 113.8 7.8 128 62-215 5-142 (143)
65 1qvr_A CLPB protein; coiled co 99.7 1.7E-16 5.7E-21 144.7 9.3 166 60-233 557-771 (854)
66 2qby_B CDC6 homolog 3, cell di 99.7 3.1E-16 1E-20 130.6 9.9 181 45-234 7-212 (384)
67 3cf2_A TER ATPase, transitiona 99.7 3.9E-16 1.3E-20 139.2 10.9 160 57-237 200-390 (806)
68 3t15_A Ribulose bisphosphate c 99.6 2.9E-15 9.8E-20 120.3 14.3 135 82-238 36-204 (293)
69 3hws_A ATP-dependent CLP prote 99.6 3.7E-16 1.3E-20 129.4 7.4 107 62-180 16-155 (363)
70 1d2n_A N-ethylmaleimide-sensit 99.6 1.2E-15 4.1E-20 121.3 8.7 123 81-220 63-204 (272)
71 2qby_A CDC6 homolog 1, cell di 99.6 2E-15 7E-20 125.5 10.3 171 46-233 8-211 (386)
72 3cf2_A TER ATPase, transitiona 99.6 8.3E-16 2.8E-20 137.2 6.2 156 57-237 473-666 (806)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 7.9E-15 2.7E-19 125.2 11.8 149 61-220 22-188 (500)
74 2dhr_A FTSH; AAA+ protein, hex 99.6 2.2E-14 7.4E-19 122.4 13.7 158 56-234 26-216 (499)
75 1ixz_A ATP-dependent metallopr 99.6 2.7E-14 9.2E-19 112.4 13.1 161 54-235 9-202 (254)
76 3k1j_A LON protease, ATP-depen 99.6 1.4E-15 4.9E-20 133.6 6.2 56 51-108 31-86 (604)
77 2x8a_A Nuclear valosin-contain 99.6 1.3E-13 4.5E-18 109.5 16.7 157 57-234 6-193 (274)
78 1iy2_A ATP-dependent metallopr 99.5 1.2E-13 4.1E-18 110.1 13.8 159 56-235 35-226 (278)
79 1jr3_D DNA polymerase III, del 99.5 1.8E-14 6.2E-19 118.3 9.1 151 76-246 12-169 (343)
80 3f9v_A Minichromosome maintena 99.5 1E-15 3.5E-20 133.9 1.4 161 60-234 294-492 (595)
81 3ec2_A DNA replication protein 99.5 2.5E-14 8.6E-19 106.6 8.2 135 53-198 2-146 (180)
82 1g41_A Heat shock protein HSLU 99.5 3.7E-13 1.3E-17 112.8 13.7 69 155-228 250-345 (444)
83 1ypw_A Transitional endoplasmi 99.5 1.3E-15 4.5E-20 137.5 -1.3 156 57-237 473-666 (806)
84 1ypw_A Transitional endoplasmi 99.5 1.3E-13 4.4E-18 124.6 11.5 158 55-237 198-390 (806)
85 2kjq_A DNAA-related protein; s 99.4 1.1E-12 3.8E-17 94.5 6.9 101 81-208 35-140 (149)
86 1ny5_A Transcriptional regulat 99.3 1.5E-11 5E-16 102.4 13.3 156 60-220 136-317 (387)
87 2w58_A DNAI, primosome compone 99.3 3.3E-12 1.1E-16 96.8 8.2 133 51-195 15-159 (202)
88 2qgz_A Helicase loader, putati 99.3 1.1E-12 3.9E-17 105.8 5.5 131 53-195 116-258 (308)
89 3dzd_A Transcriptional regulat 99.3 1.9E-11 6.6E-16 101.0 12.2 153 62-220 130-308 (368)
90 1w5s_A Origin recognition comp 99.3 1.7E-11 5.7E-16 102.8 10.4 181 46-233 10-229 (412)
91 3f8t_A Predicted ATPase involv 99.3 4.8E-12 1.6E-16 105.7 5.7 133 63-209 215-373 (506)
92 1tue_A Replication protein E1; 99.2 3E-11 1E-15 90.2 8.7 121 68-217 43-181 (212)
93 4akg_A Glutathione S-transfera 99.2 4.7E-11 1.6E-15 118.1 11.9 140 83-232 1268-1431(2695)
94 2qen_A Walker-type ATPase; unk 99.2 1.9E-10 6.6E-15 94.1 13.3 165 59-239 10-223 (350)
95 3upu_A ATP-dependent DNA helic 99.2 4.5E-11 1.5E-15 101.8 9.3 141 47-194 10-164 (459)
96 1u0j_A DNA replication protein 99.2 4E-11 1.4E-15 93.6 7.9 134 71-240 91-258 (267)
97 2fna_A Conserved hypothetical 99.2 3.3E-10 1.1E-14 92.9 12.1 165 59-238 11-228 (357)
98 4akg_A Glutathione S-transfera 99.1 4.4E-09 1.5E-13 104.3 17.1 130 67-220 632-785 (2695)
99 3vkg_A Dynein heavy chain, cyt 99.0 1.4E-09 4.6E-14 108.6 11.2 140 82-231 1304-1468(3245)
100 1ye8_A Protein THEP1, hypothet 98.9 8.3E-09 2.8E-13 76.4 11.0 62 156-220 100-168 (178)
101 2r2a_A Uncharacterized protein 98.8 9.9E-09 3.4E-13 77.2 7.6 58 156-214 88-152 (199)
102 1g5t_A COB(I)alamin adenosyltr 98.8 1.2E-08 4.2E-13 75.8 7.5 120 82-209 28-173 (196)
103 3vkg_A Dynein heavy chain, cyt 98.8 2.3E-07 8E-12 93.0 16.9 134 67-228 591-749 (3245)
104 2orw_A Thymidine kinase; TMTK, 98.7 4.7E-09 1.6E-13 78.2 3.7 119 83-208 4-131 (184)
105 3e1s_A Exodeoxyribonuclease V, 98.7 1.2E-07 4.1E-12 82.6 10.8 119 66-195 191-316 (574)
106 1z6t_A APAF-1, apoptotic prote 98.6 1.8E-07 6.1E-12 82.1 11.1 49 57-105 120-170 (591)
107 2a5y_B CED-4; apoptosis; HET: 98.6 5.1E-07 1.8E-11 78.5 12.9 152 64-231 131-305 (549)
108 2vhj_A Ntpase P4, P4; non- hyd 98.6 3E-07 1E-11 73.6 9.3 23 83-105 124-146 (331)
109 1vt4_I APAF-1 related killer D 98.5 7.8E-07 2.7E-11 81.4 12.5 42 64-105 131-173 (1221)
110 1w36_D RECD, exodeoxyribonucle 98.5 6.3E-07 2.2E-11 78.8 10.8 109 82-194 164-298 (608)
111 2r8r_A Sensor protein; KDPD, P 98.5 7.7E-07 2.6E-11 67.7 9.6 135 83-229 7-174 (228)
112 3sfz_A APAF-1, apoptotic pepti 98.4 2.4E-06 8.2E-11 80.9 12.4 49 57-105 120-170 (1249)
113 2i3b_A HCR-ntpase, human cance 98.3 4.7E-07 1.6E-11 67.5 4.6 70 153-225 103-181 (189)
114 3cmu_A Protein RECA, recombina 98.3 1.4E-06 4.9E-11 84.5 8.6 30 80-109 1425-1454(2050)
115 2b8t_A Thymidine kinase; deoxy 98.3 3.4E-06 1.2E-10 64.4 9.0 96 82-193 12-124 (223)
116 2fz4_A DNA repair protein RAD2 98.3 4.3E-06 1.5E-10 64.6 9.0 37 67-106 96-132 (237)
117 2j9r_A Thymidine kinase; TK1, 98.2 2.8E-06 9.5E-11 64.1 6.6 118 84-208 30-156 (214)
118 3llm_A ATP-dependent RNA helic 98.1 2.8E-05 9.5E-10 59.9 10.8 22 83-104 77-98 (235)
119 3dl0_A Adenylate kinase; phosp 98.0 0.00015 5.3E-09 54.8 13.3 23 84-106 2-24 (216)
120 1xx6_A Thymidine kinase; NESG, 98.0 1.2E-06 4E-11 65.4 1.3 105 83-193 9-116 (191)
121 3kl4_A SRP54, signal recogniti 98.0 3.6E-05 1.2E-09 64.5 10.4 26 83-108 98-123 (433)
122 3zvl_A Bifunctional polynucleo 98.0 7.1E-05 2.4E-09 62.7 12.2 100 82-206 258-357 (416)
123 3fb4_A Adenylate kinase; psych 98.0 5.6E-05 1.9E-09 57.3 10.3 23 84-106 2-24 (216)
124 1t6n_A Probable ATP-dependent 98.0 0.00014 4.9E-09 55.1 12.6 45 153-197 156-203 (220)
125 3cmu_A Protein RECA, recombina 98.0 1.5E-05 5.2E-10 77.6 8.3 99 81-195 1080-1217(2050)
126 3dm5_A SRP54, signal recogniti 98.0 6.2E-05 2.1E-09 63.1 10.6 28 82-109 100-127 (443)
127 1ly1_A Polynucleotide kinase; 97.9 7.6E-05 2.6E-09 54.7 9.7 22 84-105 4-25 (181)
128 3a4m_A L-seryl-tRNA(SEC) kinas 97.9 9.3E-05 3.2E-09 57.9 10.6 25 82-106 4-28 (260)
129 3trf_A Shikimate kinase, SK; a 97.9 9.6E-06 3.3E-10 59.9 4.4 25 82-106 5-29 (185)
130 1qde_A EIF4A, translation init 97.9 6.4E-05 2.2E-09 57.2 8.8 43 154-196 154-198 (224)
131 3sr0_A Adenylate kinase; phosp 97.9 6.2E-05 2.1E-09 56.8 8.5 23 84-106 2-24 (206)
132 1qhx_A CPT, protein (chloramph 97.9 1.4E-05 4.9E-10 58.6 4.9 24 83-106 4-27 (178)
133 2px0_A Flagellar biosynthesis 97.9 0.00026 8.7E-09 56.5 12.4 27 81-107 104-130 (296)
134 2orv_A Thymidine kinase; TP4A 97.9 2.5E-05 8.5E-10 59.5 6.1 104 83-193 20-124 (234)
135 3b6e_A Interferon-induced heli 97.9 1.9E-05 6.6E-10 59.6 5.4 24 83-106 49-72 (216)
136 1vec_A ATP-dependent RNA helic 97.9 8.8E-05 3E-09 55.6 9.1 21 83-103 41-61 (206)
137 3h1t_A Type I site-specific re 97.8 6.7E-05 2.3E-09 65.7 9.4 42 65-107 182-223 (590)
138 3vaa_A Shikimate kinase, SK; s 97.8 1.6E-05 5.4E-10 59.7 4.5 26 81-106 24-49 (199)
139 3jvv_A Twitching mobility prot 97.8 0.00014 4.8E-09 59.5 10.2 25 82-106 123-147 (356)
140 3pey_A ATP-dependent RNA helic 97.8 0.00012 4E-09 60.4 10.0 28 79-106 41-68 (395)
141 2iut_A DNA translocase FTSK; n 97.8 0.00078 2.7E-08 58.2 15.1 65 155-220 343-415 (574)
142 1zuh_A Shikimate kinase; alpha 97.8 2E-05 6.8E-10 57.3 4.2 26 81-106 6-31 (168)
143 3iij_A Coilin-interacting nucl 97.8 2.1E-05 7.2E-10 57.9 4.4 25 82-106 11-35 (180)
144 3kb2_A SPBC2 prophage-derived 97.8 2.1E-05 7.3E-10 57.2 4.3 23 84-106 3-25 (173)
145 1w4r_A Thymidine kinase; type 97.8 2.1E-05 7.2E-10 58.3 4.1 25 82-106 20-45 (195)
146 3tlx_A Adenylate kinase 2; str 97.8 0.00064 2.2E-08 52.5 12.8 26 81-106 28-53 (243)
147 1kag_A SKI, shikimate kinase I 97.7 2.1E-05 7.3E-10 57.4 3.8 24 83-106 5-28 (173)
148 1y63_A LMAJ004144AAA protein; 97.7 2.6E-05 9.1E-10 57.6 4.3 25 81-105 9-33 (184)
149 3bor_A Human initiation factor 97.7 0.0001 3.4E-09 56.8 7.7 23 83-105 68-90 (237)
150 1svm_A Large T antigen; AAA+ f 97.7 3.2E-05 1.1E-09 63.7 5.1 27 80-106 167-193 (377)
151 1hv8_A Putative ATP-dependent 97.7 0.00015 5.2E-09 59.1 9.2 24 83-106 45-68 (367)
152 2gxq_A Heat resistant RNA depe 97.7 0.0002 6.7E-09 53.7 9.2 21 83-103 39-59 (207)
153 1via_A Shikimate kinase; struc 97.7 2.7E-05 9.1E-10 57.1 4.0 23 84-106 6-28 (175)
154 2iyv_A Shikimate kinase, SK; t 97.7 3.1E-05 1.1E-09 57.1 4.2 24 83-106 3-26 (184)
155 2zr9_A Protein RECA, recombina 97.7 0.00011 3.6E-09 60.1 7.6 27 81-107 60-86 (349)
156 3hr8_A Protein RECA; alpha and 97.7 0.00021 7.1E-09 58.4 9.3 27 81-107 60-86 (356)
157 1u94_A RECA protein, recombina 97.7 8.9E-05 3E-09 60.7 7.0 27 81-107 62-88 (356)
158 1rif_A DAR protein, DNA helica 97.7 0.00029 1E-08 55.6 9.8 37 67-106 116-152 (282)
159 3sop_A Neuronal-specific septi 97.7 0.002 6.7E-08 50.6 14.4 23 84-106 4-26 (270)
160 3ber_A Probable ATP-dependent 97.7 0.00016 5.4E-09 56.2 8.0 19 83-101 81-99 (249)
161 4eun_A Thermoresistant glucoki 97.6 3.9E-05 1.3E-09 57.5 4.2 28 79-106 26-53 (200)
162 3uie_A Adenylyl-sulfate kinase 97.6 4.7E-05 1.6E-09 57.1 4.6 30 78-107 21-50 (200)
163 3e2i_A Thymidine kinase; Zn-bi 97.6 5E-05 1.7E-09 57.1 4.6 105 82-192 28-135 (219)
164 2ze6_A Isopentenyl transferase 97.6 4.1E-05 1.4E-09 59.7 4.4 23 84-106 3-25 (253)
165 2ga8_A Hypothetical 39.9 kDa p 97.6 5E-05 1.7E-09 61.7 4.9 35 72-106 14-48 (359)
166 1kht_A Adenylate kinase; phosp 97.6 4E-05 1.4E-09 56.8 4.0 25 83-107 4-28 (192)
167 2xau_A PRE-mRNA-splicing facto 97.6 0.00021 7E-09 64.6 9.2 33 71-105 100-132 (773)
168 1xp8_A RECA protein, recombina 97.6 0.00039 1.3E-08 57.1 10.0 27 81-107 73-99 (366)
169 3nh6_A ATP-binding cassette SU 97.6 0.00018 6.2E-09 57.5 7.8 27 80-106 78-104 (306)
170 3cmw_A Protein RECA, recombina 97.6 0.00014 4.7E-09 70.2 8.1 25 82-106 1082-1106(1706)
171 1s2m_A Putative ATP-dependent 97.6 0.00067 2.3E-08 56.1 11.5 24 83-106 59-82 (400)
172 1q0u_A Bstdead; DEAD protein, 97.6 0.00024 8.1E-09 53.9 8.0 23 83-105 42-64 (219)
173 2qor_A Guanylate kinase; phosp 97.6 4.7E-05 1.6E-09 57.2 4.0 26 81-106 11-36 (204)
174 2v3c_C SRP54, signal recogniti 97.6 0.00015 5E-09 60.9 7.3 25 83-107 100-124 (432)
175 1aky_A Adenylate kinase; ATP:A 97.6 5.1E-05 1.7E-09 57.8 4.2 26 81-106 3-28 (220)
176 3c8u_A Fructokinase; YP_612366 97.6 6.4E-05 2.2E-09 56.7 4.6 39 69-107 7-47 (208)
177 3lw7_A Adenylate kinase relate 97.6 4.6E-05 1.6E-09 55.5 3.7 22 84-106 3-24 (179)
178 2c95_A Adenylate kinase 1; tra 97.6 5.6E-05 1.9E-09 56.2 4.2 26 81-106 8-33 (196)
179 1nks_A Adenylate kinase; therm 97.6 4E-05 1.4E-09 56.8 3.3 24 84-107 3-26 (194)
180 3vkw_A Replicase large subunit 97.6 6.2E-05 2.1E-09 63.0 4.7 98 84-194 163-269 (446)
181 2rhm_A Putative kinase; P-loop 97.6 4.2E-05 1.4E-09 56.7 3.4 25 82-106 5-29 (193)
182 4b3f_X DNA-binding protein smu 97.6 8.7E-05 3E-09 65.7 6.0 41 65-107 190-230 (646)
183 3t61_A Gluconokinase; PSI-biol 97.6 6.1E-05 2.1E-09 56.5 4.3 25 82-106 18-42 (202)
184 3fho_A ATP-dependent RNA helic 97.6 0.00024 8.3E-09 61.0 8.5 24 82-105 158-181 (508)
185 3fht_A ATP-dependent RNA helic 97.6 0.0004 1.4E-08 57.6 9.6 25 79-103 61-85 (412)
186 1e6c_A Shikimate kinase; phosp 97.6 5.7E-05 1.9E-09 55.0 3.9 24 83-106 3-26 (173)
187 2cdn_A Adenylate kinase; phosp 97.6 7.5E-05 2.6E-09 55.9 4.6 25 82-106 20-44 (201)
188 1kgd_A CASK, peripheral plasma 97.6 6E-05 2E-09 55.5 4.0 25 82-106 5-29 (180)
189 1ltq_A Polynucleotide kinase; 97.5 0.00079 2.7E-08 53.6 10.8 23 84-106 4-26 (301)
190 3cm0_A Adenylate kinase; ATP-b 97.5 4.5E-05 1.5E-09 56.3 3.1 24 83-106 5-28 (186)
191 1zp6_A Hypothetical protein AT 97.5 4.7E-05 1.6E-09 56.5 3.1 26 81-106 8-33 (191)
192 1knq_A Gluconate kinase; ALFA/ 97.5 5.9E-05 2E-09 55.1 3.6 25 82-106 8-32 (175)
193 3umf_A Adenylate kinase; rossm 97.5 4.8E-05 1.6E-09 57.8 3.1 24 83-106 30-53 (217)
194 1zak_A Adenylate kinase; ATP:A 97.5 6.6E-05 2.3E-09 57.2 3.9 26 81-106 4-29 (222)
195 1gvn_B Zeta; postsegregational 97.5 3.9E-05 1.3E-09 61.0 2.7 25 82-106 33-57 (287)
196 2eyq_A TRCF, transcription-rep 97.5 0.00095 3.2E-08 62.9 12.3 44 63-106 605-648 (1151)
197 2pt5_A Shikimate kinase, SK; a 97.5 7.7E-05 2.6E-09 54.0 4.0 23 84-106 2-24 (168)
198 3cmw_A Protein RECA, recombina 97.5 0.00029 1E-08 68.0 8.9 27 81-107 33-59 (1706)
199 3rlf_A Maltose/maltodextrin im 97.5 0.00026 9E-09 58.2 7.6 27 80-106 27-53 (381)
200 1v5w_A DMC1, meiotic recombina 97.5 0.00043 1.5E-08 56.4 8.9 42 82-123 122-166 (343)
201 3fmo_B ATP-dependent RNA helic 97.5 0.0005 1.7E-08 54.9 8.9 42 155-196 235-279 (300)
202 3eiq_A Eukaryotic initiation f 97.5 0.00038 1.3E-08 57.8 8.6 40 154-193 182-222 (414)
203 1ak2_A Adenylate kinase isoenz 97.5 8.8E-05 3E-09 57.0 4.3 26 81-106 15-40 (233)
204 2plr_A DTMP kinase, probable t 97.5 7E-05 2.4E-09 56.4 3.6 26 83-108 5-30 (213)
205 2j0s_A ATP-dependent RNA helic 97.5 0.00071 2.4E-08 56.2 10.1 24 83-106 75-98 (410)
206 2yvu_A Probable adenylyl-sulfa 97.5 6.2E-05 2.1E-09 55.6 3.2 27 81-107 12-38 (186)
207 2oxc_A Probable ATP-dependent 97.5 0.00033 1.1E-08 53.6 7.4 24 83-106 62-86 (230)
208 3be4_A Adenylate kinase; malar 97.5 8E-05 2.7E-09 56.6 3.8 25 82-106 5-29 (217)
209 3tau_A Guanylate kinase, GMP k 97.5 9.2E-05 3.1E-09 55.9 4.1 26 81-106 7-32 (208)
210 2bwj_A Adenylate kinase 5; pho 97.5 8.1E-05 2.8E-09 55.5 3.7 24 83-106 13-36 (199)
211 3dkp_A Probable ATP-dependent 97.5 0.00064 2.2E-08 52.4 9.0 45 153-197 173-223 (245)
212 1zd8_A GTP:AMP phosphotransfer 97.5 7.8E-05 2.7E-09 57.0 3.7 25 82-106 7-31 (227)
213 2vli_A Antibiotic resistance p 97.5 5.4E-05 1.8E-09 55.7 2.7 25 82-106 5-29 (183)
214 2wwf_A Thymidilate kinase, put 97.4 9.2E-05 3.2E-09 55.8 3.9 26 82-107 10-35 (212)
215 1tev_A UMP-CMP kinase; ploop, 97.4 8.2E-05 2.8E-09 55.2 3.6 24 83-106 4-27 (196)
216 3tr0_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 55.2 4.0 26 81-106 6-31 (205)
217 3nwj_A ATSK2; P loop, shikimat 97.4 0.00014 4.9E-09 56.5 4.9 39 68-106 33-72 (250)
218 1ex7_A Guanylate kinase; subst 97.4 8.8E-05 3E-09 54.9 3.5 23 84-106 3-25 (186)
219 3tui_C Methionine import ATP-b 97.4 0.00055 1.9E-08 56.0 8.4 41 154-194 180-223 (366)
220 1ukz_A Uridylate kinase; trans 97.4 0.00011 3.6E-09 55.1 4.0 24 83-106 16-39 (203)
221 2pl3_A Probable ATP-dependent 97.4 0.00064 2.2E-08 52.1 8.5 43 154-196 170-214 (236)
222 1nn5_A Similar to deoxythymidy 97.4 0.00011 3.7E-09 55.5 4.0 27 81-107 8-34 (215)
223 3crm_A TRNA delta(2)-isopenten 97.4 0.00012 4.2E-09 58.8 4.4 23 84-106 7-29 (323)
224 2jaq_A Deoxyguanosine kinase; 97.4 9.3E-05 3.2E-09 55.3 3.6 23 84-106 2-24 (205)
225 1rz3_A Hypothetical protein rb 97.4 0.0002 7E-09 53.6 5.4 39 68-106 5-46 (201)
226 1xti_A Probable ATP-dependent 97.4 0.00089 3E-08 55.1 9.7 40 153-192 150-191 (391)
227 2j41_A Guanylate kinase; GMP, 97.4 0.00012 4.1E-09 54.9 4.1 26 81-106 5-30 (207)
228 1cke_A CK, MSSA, protein (cyti 97.4 0.00012 4E-09 55.8 4.0 24 83-106 6-29 (227)
229 2v54_A DTMP kinase, thymidylat 97.4 0.0001 3.6E-09 55.1 3.5 25 82-106 4-28 (204)
230 1fuu_A Yeast initiation factor 97.4 0.00038 1.3E-08 57.4 7.2 41 153-193 160-201 (394)
231 1qf9_A UMP/CMP kinase, protein 97.4 0.0001 3.4E-09 54.6 3.4 24 83-106 7-30 (194)
232 1nrj_B SR-beta, signal recogni 97.4 0.0042 1.4E-07 46.6 12.6 26 81-106 11-36 (218)
233 3iuy_A Probable ATP-dependent 97.4 0.00077 2.6E-08 51.3 8.4 40 153-192 165-205 (228)
234 1e4v_A Adenylate kinase; trans 97.4 0.00011 3.7E-09 55.7 3.5 23 84-106 2-24 (214)
235 3a00_A Guanylate kinase, GMP k 97.4 0.00012 4.1E-09 54.2 3.7 24 83-106 2-25 (186)
236 3ney_A 55 kDa erythrocyte memb 97.4 0.00014 4.6E-09 54.3 3.9 26 81-106 18-43 (197)
237 2p5t_B PEZT; postsegregational 97.4 0.00019 6.3E-09 55.9 4.9 25 82-106 32-56 (253)
238 2bbw_A Adenylate kinase 4, AK4 97.4 0.00013 4.6E-09 56.4 4.0 25 82-106 27-51 (246)
239 2j37_W Signal recognition part 97.4 0.0012 4.1E-08 56.4 10.1 24 84-107 103-126 (504)
240 2pbr_A DTMP kinase, thymidylat 97.4 0.00012 4.2E-09 54.2 3.6 23 84-106 2-24 (195)
241 3fe2_A Probable ATP-dependent 97.3 0.00073 2.5E-08 52.0 8.0 43 153-195 174-218 (242)
242 4gzl_A RAS-related C3 botulinu 97.3 3.6E-05 1.2E-09 57.8 0.5 42 65-106 13-54 (204)
243 2z0h_A DTMP kinase, thymidylat 97.3 0.00013 4.4E-09 54.3 3.6 23 84-106 2-24 (197)
244 1lvg_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 54.5 3.7 25 82-106 4-28 (198)
245 3a8t_A Adenylate isopentenyltr 97.3 0.00012 4.2E-09 59.0 3.3 24 83-106 41-64 (339)
246 3fmp_B ATP-dependent RNA helic 97.3 0.0007 2.4E-08 57.6 8.2 22 80-101 129-150 (479)
247 2xb4_A Adenylate kinase; ATP-b 97.3 0.00014 4.9E-09 55.4 3.6 23 84-106 2-24 (223)
248 2bdt_A BH3686; alpha-beta prot 97.3 0.00014 4.6E-09 53.9 3.3 23 84-106 4-26 (189)
249 1m7g_A Adenylylsulfate kinase; 97.3 0.00027 9.2E-09 53.3 5.1 28 79-106 22-49 (211)
250 3ly5_A ATP-dependent RNA helic 97.3 0.00033 1.1E-08 54.8 5.7 19 83-101 92-110 (262)
251 2wsm_A Hydrogenase expression/ 97.3 0.0002 6.9E-09 54.3 4.1 42 65-106 13-54 (221)
252 2pez_A Bifunctional 3'-phospho 97.3 0.00017 6E-09 52.8 3.6 25 82-106 5-29 (179)
253 2ius_A DNA translocase FTSK; n 97.3 0.0058 2E-07 52.3 13.3 69 156-229 298-374 (512)
254 1uj2_A Uridine-cytidine kinase 97.3 0.00017 5.9E-09 56.1 3.6 26 81-106 21-46 (252)
255 2z0m_A 337AA long hypothetical 97.3 0.00072 2.5E-08 54.4 7.5 24 83-106 32-55 (337)
256 1ls1_A Signal recognition part 97.3 0.0006 2.1E-08 54.3 6.7 25 83-107 99-123 (295)
257 1wp9_A ATP-dependent RNA helic 97.2 0.001 3.6E-08 56.0 8.6 23 84-106 25-47 (494)
258 3foz_A TRNA delta(2)-isopenten 97.2 0.00024 8.3E-09 56.6 4.2 23 84-106 12-34 (316)
259 1z6g_A Guanylate kinase; struc 97.2 0.00024 8.1E-09 54.0 3.9 26 81-106 22-47 (218)
260 2v6i_A RNA helicase; membrane, 97.2 0.00019 6.5E-09 60.4 3.6 24 82-105 2-26 (431)
261 1s96_A Guanylate kinase, GMP k 97.2 0.00026 9E-09 53.8 4.0 26 81-106 15-40 (219)
262 2fwr_A DNA repair protein RAD2 97.2 0.0025 8.6E-08 54.0 10.5 37 67-106 96-132 (472)
263 2xxa_A Signal recognition part 97.2 0.0016 5.6E-08 54.6 9.1 27 83-109 101-127 (433)
264 3asz_A Uridine kinase; cytidin 97.2 0.00021 7.3E-09 53.8 3.4 26 81-106 5-30 (211)
265 3exa_A TRNA delta(2)-isopenten 97.2 0.00023 8E-09 56.8 3.7 23 84-106 5-27 (322)
266 1znw_A Guanylate kinase, GMP k 97.2 0.00028 9.6E-09 53.1 4.1 27 80-106 18-44 (207)
267 2grj_A Dephospho-COA kinase; T 97.2 0.00029 9.9E-09 52.4 3.9 23 84-106 14-36 (192)
268 4gp7_A Metallophosphoesterase; 97.2 0.0032 1.1E-07 45.7 9.5 21 81-101 8-28 (171)
269 3r20_A Cytidylate kinase; stru 97.2 0.00029 1E-08 54.0 4.0 25 82-106 9-33 (233)
270 1g8f_A Sulfate adenylyltransfe 97.2 0.0004 1.4E-08 59.4 5.2 42 67-108 378-421 (511)
271 2va8_A SSO2462, SKI2-type heli 97.2 0.00049 1.7E-08 61.7 6.0 22 82-103 46-67 (715)
272 4e22_A Cytidylate kinase; P-lo 97.2 0.00029 1E-08 54.8 4.1 26 81-106 26-51 (252)
273 4a82_A Cystic fibrosis transme 97.2 0.0011 3.8E-08 57.9 8.1 44 155-198 495-539 (578)
274 3d3q_A TRNA delta(2)-isopenten 97.2 0.00032 1.1E-08 56.7 4.4 23 84-106 9-31 (340)
275 3qf4_A ABC transporter, ATP-bi 97.2 0.0017 5.7E-08 56.8 9.2 41 155-195 497-538 (587)
276 2if2_A Dephospho-COA kinase; a 97.2 0.00021 7.2E-09 53.5 3.1 22 84-106 3-24 (204)
277 1odf_A YGR205W, hypothetical 3 97.2 0.00056 1.9E-08 54.3 5.6 26 82-107 31-56 (290)
278 3th5_A RAS-related C3 botulinu 96.2 6E-05 2.1E-09 56.4 0.0 34 73-106 21-54 (204)
279 1m7b_A RND3/RHOE small GTP-bin 97.2 0.00011 3.8E-09 54.0 1.4 23 84-106 9-31 (184)
280 3bwd_D RAC-like GTP-binding pr 97.2 0.00024 8.2E-09 51.8 3.2 25 82-106 8-32 (182)
281 1p9r_A General secretion pathw 97.2 0.00075 2.6E-08 56.4 6.5 47 60-107 146-192 (418)
282 2hf9_A Probable hydrogenase ni 97.2 0.00052 1.8E-08 52.1 5.2 41 67-107 23-63 (226)
283 1htw_A HI0065; nucleotide-bind 97.2 0.0003 1E-08 50.6 3.6 27 80-106 31-57 (158)
284 1gm5_A RECG; helicase, replica 97.1 0.00094 3.2E-08 60.2 7.5 42 65-106 372-413 (780)
285 1jjv_A Dephospho-COA kinase; P 97.1 0.00024 8.3E-09 53.3 3.2 21 84-104 4-24 (206)
286 1z0j_A RAB-22, RAS-related pro 97.1 0.0027 9.2E-08 45.4 8.7 23 84-106 8-30 (170)
287 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00036 1.2E-08 53.2 4.1 26 81-106 22-47 (235)
288 2qmh_A HPR kinase/phosphorylas 97.1 0.0002 6.9E-09 53.2 2.6 24 83-106 35-58 (205)
289 3tw8_B RAS-related protein RAB 97.1 0.00018 6.1E-09 52.4 2.3 22 84-105 11-32 (181)
290 2eyu_A Twitching motility prot 97.1 0.00044 1.5E-08 54.1 4.6 28 79-106 22-49 (261)
291 3ake_A Cytidylate kinase; CMP 97.1 0.00035 1.2E-08 52.3 3.9 23 84-106 4-26 (208)
292 2qag_C Septin-7; cell cycle, c 97.1 0.0073 2.5E-07 50.4 12.2 23 84-106 33-55 (418)
293 3b85_A Phosphate starvation-in 97.1 0.00026 8.9E-09 53.4 3.1 24 82-105 22-45 (208)
294 3q3j_B RHO-related GTP-binding 97.1 0.00017 6E-09 54.5 2.1 23 84-106 29-51 (214)
295 2oca_A DAR protein, ATP-depend 97.1 0.0029 9.8E-08 54.2 9.9 37 67-106 116-152 (510)
296 2zj8_A DNA helicase, putative 97.1 0.0011 3.7E-08 59.5 7.4 19 82-100 39-57 (720)
297 3lxw_A GTPase IMAP family memb 97.1 0.0042 1.4E-07 48.0 9.8 22 84-105 23-44 (247)
298 3lxx_A GTPase IMAP family memb 97.1 0.002 6.9E-08 49.4 7.9 24 83-106 30-53 (239)
299 3ozx_A RNAse L inhibitor; ATP 97.1 0.0024 8.2E-08 55.2 9.1 41 155-195 156-197 (538)
300 3b5x_A Lipid A export ATP-bind 97.1 0.0045 1.6E-07 54.1 11.0 41 154-194 497-538 (582)
301 1gtv_A TMK, thymidylate kinase 97.1 0.00014 4.9E-09 54.8 1.3 24 84-107 2-25 (214)
302 3reg_A RHO-like small GTPase; 97.1 0.00016 5.5E-09 53.6 1.6 23 84-106 25-47 (194)
303 3l9o_A ATP-dependent RNA helic 97.1 0.0017 5.9E-08 60.9 8.7 25 82-106 199-223 (1108)
304 2ehv_A Hypothetical protein PH 97.1 0.00037 1.3E-08 53.8 3.7 24 81-104 29-52 (251)
305 4dkx_A RAS-related protein RAB 97.1 0.0036 1.2E-07 47.4 9.1 23 84-106 15-37 (216)
306 1n0w_A DNA repair protein RAD5 97.1 0.0018 6.2E-08 49.6 7.6 26 81-106 23-48 (243)
307 2oap_1 GSPE-2, type II secreti 97.1 0.00043 1.5E-08 59.4 4.3 38 67-106 247-284 (511)
308 1uf9_A TT1252 protein; P-loop, 97.1 0.00034 1.2E-08 52.2 3.3 24 82-105 8-31 (203)
309 1wrb_A DJVLGB; RNA helicase, D 97.1 0.0017 5.7E-08 50.3 7.4 19 83-101 61-79 (253)
310 1kao_A RAP2A; GTP-binding prot 97.1 0.0046 1.6E-07 43.9 9.3 23 84-106 5-27 (167)
311 2v9p_A Replication protein E1; 97.0 0.0005 1.7E-08 54.9 4.3 28 79-106 123-150 (305)
312 1gwn_A RHO-related GTP-binding 97.0 0.00017 5.7E-09 54.2 1.4 23 84-106 30-52 (205)
313 3j16_B RLI1P; ribosome recycli 97.0 0.0022 7.6E-08 56.1 8.6 40 155-194 239-280 (608)
314 2ce2_X GTPase HRAS; signaling 97.0 0.0033 1.1E-07 44.6 8.3 23 84-106 5-27 (166)
315 3dz8_A RAS-related protein RAB 97.0 0.0024 8.3E-08 46.9 7.7 23 84-106 25-47 (191)
316 1z0f_A RAB14, member RAS oncog 97.0 0.0057 1.9E-07 44.1 9.6 23 84-106 17-39 (179)
317 2qt1_A Nicotinamide riboside k 97.0 0.00037 1.3E-08 52.3 3.2 24 83-106 22-45 (207)
318 2p6r_A Afuhel308 helicase; pro 97.0 0.0014 4.8E-08 58.6 7.4 34 64-103 28-61 (702)
319 3lnc_A Guanylate kinase, GMP k 97.0 0.00028 9.6E-09 54.0 2.5 26 81-106 26-52 (231)
320 3tqc_A Pantothenate kinase; bi 97.0 0.00092 3.1E-08 53.8 5.6 24 84-107 94-117 (321)
321 2gk6_A Regulator of nonsense t 97.0 0.00083 2.8E-08 59.2 5.8 39 66-107 182-220 (624)
322 1u8z_A RAS-related protein RAL 97.0 0.0025 8.6E-08 45.4 7.4 23 84-106 6-28 (168)
323 1xjc_A MOBB protein homolog; s 97.0 0.00061 2.1E-08 49.5 4.0 26 82-107 4-29 (169)
324 1rj9_A FTSY, signal recognitio 97.0 0.00058 2E-08 54.6 4.2 28 81-108 101-128 (304)
325 4eaq_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 52.6 3.6 28 81-108 25-52 (229)
326 4a74_A DNA repair and recombin 97.0 0.00045 1.6E-08 52.5 3.3 27 81-107 24-50 (231)
327 2jeo_A Uridine-cytidine kinase 97.0 0.00054 1.9E-08 52.9 3.8 26 81-106 24-49 (245)
328 2cvh_A DNA repair and recombin 97.0 0.00061 2.1E-08 51.4 4.0 24 81-104 19-42 (220)
329 4a2p_A RIG-I, retinoic acid in 96.9 0.01 3.6E-07 51.1 12.0 24 83-106 23-46 (556)
330 1z63_A Helicase of the SNF2/RA 96.9 0.0016 5.4E-08 55.7 6.7 134 65-205 41-197 (500)
331 3qf4_B Uncharacterized ABC tra 96.9 0.0015 5.1E-08 57.3 6.6 27 80-106 379-405 (598)
332 1q3t_A Cytidylate kinase; nucl 96.9 0.0011 3.8E-08 50.9 5.1 26 81-106 15-40 (236)
333 2zpa_A Uncharacterized protein 96.9 0.0029 1E-07 55.6 8.2 100 67-177 178-277 (671)
334 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00016 5.6E-09 52.9 0.4 23 84-106 7-29 (186)
335 1j8m_F SRP54, signal recogniti 96.9 0.0023 7.9E-08 51.0 7.0 25 83-107 99-123 (297)
336 2dr3_A UPF0273 protein PH0284; 96.9 0.00068 2.3E-08 52.1 3.9 26 81-106 22-47 (247)
337 3aez_A Pantothenate kinase; tr 96.9 0.00064 2.2E-08 54.6 3.8 28 80-107 88-115 (312)
338 3b60_A Lipid A export ATP-bind 96.9 0.0041 1.4E-07 54.4 9.2 42 155-196 498-540 (582)
339 3bc1_A RAS-related protein RAB 96.9 0.0024 8.3E-08 46.8 6.8 23 84-106 13-35 (195)
340 3tif_A Uncharacterized ABC tra 96.9 0.00057 2E-08 52.5 3.3 41 155-195 163-206 (235)
341 3io5_A Recombination and repai 96.9 0.00056 1.9E-08 54.7 3.3 24 84-107 30-53 (333)
342 3eph_A TRNA isopentenyltransfe 96.9 0.00072 2.5E-08 55.9 4.1 23 84-106 4-26 (409)
343 3p32_A Probable GTPase RV1496/ 96.9 0.0017 5.7E-08 53.2 6.3 39 70-108 65-105 (355)
344 2ffh_A Protein (FFH); SRP54, s 96.9 0.0043 1.5E-07 51.9 8.8 27 83-109 99-125 (425)
345 3bh0_A DNAB-like replicative h 96.9 0.0049 1.7E-07 49.5 8.9 28 81-108 67-94 (315)
346 1vht_A Dephospho-COA kinase; s 96.9 0.0006 2.1E-08 51.6 3.3 22 83-104 5-26 (218)
347 1np6_A Molybdopterin-guanine d 96.9 0.00072 2.5E-08 49.4 3.6 26 82-107 6-31 (174)
348 2bov_A RAla, RAS-related prote 96.9 0.0069 2.4E-07 44.9 9.1 23 84-106 16-38 (206)
349 3cr8_A Sulfate adenylyltranfer 96.9 0.00065 2.2E-08 58.8 3.7 40 68-107 353-394 (552)
350 4a1f_A DNAB helicase, replicat 96.9 0.0044 1.5E-07 50.2 8.4 27 81-107 45-71 (338)
351 2gza_A Type IV secretion syste 96.9 0.0011 3.6E-08 54.5 4.9 26 81-106 174-199 (361)
352 1ewq_A DNA mismatch repair pro 96.9 0.0046 1.6E-07 55.6 9.3 25 82-106 576-600 (765)
353 3tqf_A HPR(Ser) kinase; transf 96.9 0.00065 2.2E-08 49.2 3.1 24 82-105 16-39 (181)
354 3clv_A RAB5 protein, putative; 96.9 0.0024 8.3E-08 47.2 6.4 24 83-106 8-31 (208)
355 2z43_A DNA repair and recombin 96.8 0.0032 1.1E-07 50.8 7.5 27 81-107 106-132 (324)
356 2h92_A Cytidylate kinase; ross 96.8 0.00094 3.2E-08 50.5 4.2 24 83-106 4-27 (219)
357 3thx_A DNA mismatch repair pro 96.8 0.0062 2.1E-07 55.9 10.1 24 82-105 662-685 (934)
358 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00091 3.1E-08 54.1 4.3 36 69-106 160-195 (330)
359 2whx_A Serine protease/ntpase/ 96.8 0.0019 6.5E-08 56.8 6.5 25 81-105 185-210 (618)
360 2xgj_A ATP-dependent RNA helic 96.8 0.003 1E-07 58.7 8.1 23 83-105 102-124 (1010)
361 2a9k_A RAS-related protein RAL 96.8 0.0063 2.1E-07 44.2 8.5 23 84-106 20-42 (187)
362 1sq5_A Pantothenate kinase; P- 96.8 0.0015 5.1E-08 52.4 5.4 28 80-107 78-105 (308)
363 3tbk_A RIG-I helicase domain; 96.8 0.0065 2.2E-07 52.3 9.8 24 83-106 20-43 (555)
364 3o8b_A HCV NS3 protease/helica 96.8 0.0032 1.1E-07 55.5 7.9 42 153-194 316-360 (666)
365 2db3_A ATP-dependent RNA helic 96.8 0.0064 2.2E-07 51.0 9.5 19 82-100 93-111 (434)
366 2ewv_A Twitching motility prot 96.8 0.00092 3.1E-08 55.1 4.2 27 80-106 134-160 (372)
367 3con_A GTPase NRAS; structural 96.8 0.00032 1.1E-08 51.7 1.3 23 84-106 23-45 (190)
368 2pcj_A ABC transporter, lipopr 96.8 0.00063 2.1E-08 51.9 2.9 41 154-194 157-199 (224)
369 2cbz_A Multidrug resistance-as 96.8 0.00077 2.6E-08 51.9 3.3 27 80-106 29-55 (237)
370 2r6a_A DNAB helicase, replicat 96.8 0.0054 1.8E-07 51.9 8.8 26 82-107 203-228 (454)
371 1cr0_A DNA primase/helicase; R 96.8 0.00097 3.3E-08 53.0 4.1 28 80-107 33-60 (296)
372 1nlf_A Regulatory protein REPA 96.8 0.00093 3.2E-08 52.7 3.9 26 81-106 29-54 (279)
373 1zbd_A Rabphilin-3A; G protein 96.8 0.0042 1.4E-07 46.1 7.3 23 84-106 10-32 (203)
374 2wjy_A Regulator of nonsense t 96.8 0.0016 5.4E-08 59.0 5.7 39 66-107 358-396 (800)
375 3oes_A GTPase rhebl1; small GT 96.8 0.00042 1.4E-08 51.7 1.7 23 84-106 26-48 (201)
376 2j1l_A RHO-related GTP-binding 96.8 0.00023 8E-09 53.7 0.3 22 84-105 36-57 (214)
377 1r8s_A ADP-ribosylation factor 96.8 0.077 2.6E-06 37.4 15.8 23 84-106 2-24 (164)
378 2z83_A Helicase/nucleoside tri 96.8 0.0019 6.7E-08 54.7 5.9 24 82-105 21-45 (459)
379 3b9q_A Chloroplast SRP recepto 96.8 0.00095 3.2E-08 53.3 3.7 25 83-107 101-125 (302)
380 2q6t_A DNAB replication FORK h 96.7 0.0041 1.4E-07 52.4 7.8 26 82-107 200-225 (444)
381 1b0u_A Histidine permease; ABC 96.7 0.00086 2.9E-08 52.4 3.3 27 80-106 30-56 (262)
382 2il1_A RAB12; G-protein, GDP, 96.7 0.0062 2.1E-07 44.8 7.9 22 84-105 28-49 (192)
383 1sgw_A Putative ABC transporte 96.7 0.00084 2.9E-08 50.8 3.0 26 81-106 34-59 (214)
384 2gco_A H9, RHO-related GTP-bin 96.7 0.00036 1.2E-08 52.1 1.0 23 84-106 27-49 (201)
385 2f6r_A COA synthase, bifunctio 96.7 0.00077 2.6E-08 53.3 2.9 22 83-104 76-97 (281)
386 3thx_B DNA mismatch repair pro 96.7 0.01 3.6E-07 54.3 10.5 24 82-105 673-696 (918)
387 1yks_A Genome polyprotein [con 96.7 0.0018 6.2E-08 54.6 5.3 24 81-104 7-31 (440)
388 4a4z_A Antiviral helicase SKI2 96.7 0.0024 8.1E-08 59.3 6.5 24 83-106 55-78 (997)
389 2fv8_A H6, RHO-related GTP-bin 96.7 0.00033 1.1E-08 52.5 0.7 23 84-106 27-49 (207)
390 2f1r_A Molybdopterin-guanine d 96.7 0.00058 2E-08 49.8 2.0 25 83-107 3-27 (171)
391 2zts_A Putative uncharacterize 96.7 0.00099 3.4E-08 51.3 3.4 26 81-106 29-54 (251)
392 2d2e_A SUFC protein; ABC-ATPas 96.7 0.0011 3.9E-08 51.4 3.7 41 155-195 161-203 (250)
393 3kta_A Chromosome segregation 96.7 0.001 3.5E-08 48.7 3.3 24 84-107 28-51 (182)
394 3e70_C DPA, signal recognition 96.7 0.0011 3.8E-08 53.6 3.7 26 82-107 129-154 (328)
395 1g6h_A High-affinity branched- 96.7 0.00096 3.3E-08 52.0 3.2 42 155-196 171-214 (257)
396 4f4c_A Multidrug resistance pr 96.7 0.0038 1.3E-07 59.7 7.8 27 80-106 442-468 (1321)
397 2zu0_C Probable ATP-dependent 96.7 0.0012 4.3E-08 51.7 3.8 41 155-195 182-224 (267)
398 2ff7_A Alpha-hemolysin translo 96.7 0.00099 3.4E-08 51.6 3.2 42 155-196 163-205 (247)
399 3gfo_A Cobalt import ATP-bindi 96.7 0.00095 3.2E-08 52.6 3.1 44 154-197 160-206 (275)
400 2ged_A SR-beta, signal recogni 96.7 0.0026 8.8E-08 46.8 5.4 26 81-106 47-72 (193)
401 2pze_A Cystic fibrosis transme 96.7 0.001 3.5E-08 50.9 3.2 26 81-106 33-58 (229)
402 2olj_A Amino acid ABC transpor 96.7 0.0011 3.6E-08 51.9 3.3 41 154-194 176-218 (263)
403 1ji0_A ABC transporter; ATP bi 96.7 0.001 3.5E-08 51.3 3.2 41 154-194 156-198 (240)
404 2atx_A Small GTP binding prote 96.7 0.00046 1.6E-08 51.0 1.2 23 84-106 20-42 (194)
405 3i5x_A ATP-dependent RNA helic 96.7 0.012 4.1E-07 51.0 10.3 21 80-100 109-129 (563)
406 1vma_A Cell division protein F 96.7 0.0012 4.2E-08 52.7 3.7 24 84-107 106-129 (306)
407 3fvq_A Fe(3+) IONS import ATP- 96.7 0.0012 4.1E-08 53.9 3.6 27 80-106 28-54 (359)
408 1m8p_A Sulfate adenylyltransfe 96.7 0.0014 4.7E-08 57.1 4.3 26 82-107 396-421 (573)
409 2ghi_A Transport protein; mult 96.7 0.0011 3.8E-08 51.7 3.3 42 155-196 173-215 (260)
410 2xzl_A ATP-dependent helicase 96.7 0.002 7E-08 58.3 5.5 38 66-106 362-399 (802)
411 4g1u_C Hemin import ATP-bindin 96.7 0.001 3.5E-08 52.1 3.2 40 155-194 165-207 (266)
412 1a7j_A Phosphoribulokinase; tr 96.7 0.00068 2.3E-08 53.9 2.1 25 82-106 5-29 (290)
413 2hup_A RAS-related protein RAB 96.6 0.0055 1.9E-07 45.5 7.1 23 84-106 31-53 (201)
414 2onk_A Molybdate/tungstate ABC 96.6 0.0011 3.7E-08 51.2 3.1 41 154-194 143-186 (240)
415 2qi9_C Vitamin B12 import ATP- 96.6 0.0011 3.7E-08 51.5 3.2 37 158-194 154-192 (249)
416 1vpl_A ABC transporter, ATP-bi 96.6 0.0012 3.9E-08 51.5 3.3 41 154-194 163-205 (256)
417 2ixe_A Antigen peptide transpo 96.6 0.0011 3.9E-08 52.0 3.3 41 154-194 173-216 (271)
418 2f7s_A C25KG, RAS-related prot 96.6 0.0044 1.5E-07 46.5 6.6 22 84-105 27-48 (217)
419 2ykg_A Probable ATP-dependent 96.6 0.0095 3.2E-07 53.1 9.6 24 83-106 29-52 (696)
420 1mv5_A LMRA, multidrug resista 96.6 0.00096 3.3E-08 51.6 2.8 26 81-106 27-52 (243)
421 2dyk_A GTP-binding protein; GT 96.6 0.0012 4E-08 47.0 3.1 23 83-105 2-24 (161)
422 2f9l_A RAB11B, member RAS onco 96.6 0.0012 4.2E-08 49.0 3.3 23 84-106 7-29 (199)
423 1oix_A RAS-related protein RAB 96.6 0.0012 4E-08 48.9 3.1 23 84-106 31-53 (191)
424 2ocp_A DGK, deoxyguanosine kin 96.6 0.0012 4.1E-08 50.8 3.3 24 83-106 3-26 (241)
425 4edh_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 49.4 3.6 28 83-110 7-34 (213)
426 2q3h_A RAS homolog gene family 96.6 0.0003 1E-08 52.3 -0.3 22 84-105 22-43 (201)
427 2ihy_A ABC transporter, ATP-bi 96.6 0.0012 4.2E-08 52.1 3.2 26 81-106 46-71 (279)
428 2yz2_A Putative ABC transporte 96.6 0.0013 4.5E-08 51.5 3.3 42 154-195 155-198 (266)
429 2yyz_A Sugar ABC transporter, 96.6 0.0016 5.4E-08 53.3 3.9 27 80-106 27-53 (359)
430 1z47_A CYSA, putative ABC-tran 96.6 0.0015 5.1E-08 53.3 3.7 26 81-106 40-65 (355)
431 1z2a_A RAS-related protein RAB 96.6 0.0016 5.4E-08 46.6 3.5 23 84-106 7-29 (168)
432 3llu_A RAS-related GTP-binding 96.6 0.01 3.5E-07 43.8 8.1 23 83-105 21-43 (196)
433 2it1_A 362AA long hypothetical 96.6 0.0016 5.5E-08 53.3 3.8 27 80-106 27-53 (362)
434 2og2_A Putative signal recogni 96.6 0.0015 5E-08 53.4 3.6 24 84-107 159-182 (359)
435 1zj6_A ADP-ribosylation factor 96.6 0.0027 9.4E-08 46.5 4.8 29 77-105 11-39 (187)
436 4tmk_A Protein (thymidylate ki 96.6 0.0046 1.6E-07 46.7 6.1 29 82-110 3-31 (213)
437 3v9p_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 49.9 3.3 27 81-107 24-50 (227)
438 3lda_A DNA repair protein RAD5 96.5 0.0064 2.2E-07 50.5 7.4 42 82-123 178-222 (400)
439 2nq2_C Hypothetical ABC transp 96.5 0.0013 4.5E-08 51.1 3.1 40 155-194 146-188 (253)
440 1v43_A Sugar-binding transport 96.5 0.0017 5.9E-08 53.3 3.8 27 80-106 35-61 (372)
441 2wji_A Ferrous iron transport 96.5 0.0015 5.2E-08 46.9 3.2 22 84-105 5-26 (165)
442 3gmt_A Adenylate kinase; ssgci 96.5 0.0017 5.9E-08 49.5 3.6 23 84-106 10-32 (230)
443 2gks_A Bifunctional SAT/APS ki 96.5 0.0026 9E-08 55.0 5.1 41 67-107 355-397 (546)
444 2i1q_A DNA repair and recombin 96.5 0.0056 1.9E-07 49.3 6.7 25 82-106 98-122 (322)
445 2zej_A Dardarin, leucine-rich 96.5 0.0012 4.2E-08 48.3 2.6 21 84-104 4-24 (184)
446 3ld9_A DTMP kinase, thymidylat 96.5 0.002 6.8E-08 49.0 3.8 30 79-108 18-47 (223)
447 4f92_B U5 small nuclear ribonu 96.5 0.014 4.8E-07 57.1 10.5 22 82-103 95-116 (1724)
448 3ice_A Transcription terminati 96.5 0.0026 8.8E-08 52.3 4.6 36 71-106 163-198 (422)
449 1g29_1 MALK, maltose transport 96.5 0.0018 6.1E-08 53.2 3.7 26 81-106 28-53 (372)
450 3sqw_A ATP-dependent RNA helic 96.5 0.019 6.4E-07 50.1 10.4 22 80-101 58-79 (579)
451 1ek0_A Protein (GTP-binding pr 96.5 0.0019 6.5E-08 46.2 3.5 23 84-106 5-27 (170)
452 3iev_A GTP-binding protein ERA 96.5 0.082 2.8E-06 42.1 13.3 21 85-105 13-33 (308)
453 2yc2_C IFT27, small RAB-relate 96.5 0.0032 1.1E-07 46.8 4.8 22 84-105 22-43 (208)
454 2nzj_A GTP-binding protein REM 96.5 0.0018 6.3E-08 46.6 3.3 22 84-105 6-27 (175)
455 3tmk_A Thymidylate kinase; pho 96.5 0.0023 7.9E-08 48.4 3.9 27 81-107 4-30 (216)
456 3d31_A Sulfate/molybdate ABC t 96.5 0.0014 4.8E-08 53.3 2.9 41 154-194 144-187 (348)
457 3fdi_A Uncharacterized protein 96.5 0.0023 7.9E-08 47.9 3.9 25 83-107 7-31 (201)
458 2pjz_A Hypothetical protein ST 96.5 0.0015 5.3E-08 51.0 3.0 40 155-196 146-186 (263)
459 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.002 7E-08 46.5 3.5 23 84-106 9-31 (177)
460 3lv8_A DTMP kinase, thymidylat 96.4 0.0024 8.2E-08 49.0 3.9 28 82-109 27-54 (236)
461 1lw7_A Transcriptional regulat 96.4 0.0016 5.4E-08 53.5 3.1 26 82-107 170-195 (365)
462 2j0v_A RAC-like GTP-binding pr 96.4 0.00033 1.1E-08 52.6 -0.9 23 84-106 11-33 (212)
463 2yhs_A FTSY, cell division pro 96.4 0.002 6.9E-08 54.7 3.7 26 82-107 293-318 (503)
464 2www_A Methylmalonic aciduria 96.4 0.0046 1.6E-07 50.4 5.8 25 82-106 74-98 (349)
465 1g16_A RAS-related protein SEC 96.4 0.002 6.9E-08 46.1 3.3 23 84-106 5-27 (170)
466 3g5u_A MCG1178, multidrug resi 96.4 0.0084 2.9E-07 57.2 8.2 27 80-106 414-440 (1284)
467 1z08_A RAS-related protein RAB 96.4 0.0022 7.6E-08 45.9 3.5 23 84-106 8-30 (170)
468 1ky3_A GTP-binding protein YPT 96.4 0.0022 7.6E-08 46.5 3.5 24 83-106 9-32 (182)
469 4a2q_A RIG-I, retinoic acid in 96.4 0.016 5.4E-07 52.6 9.7 24 83-106 264-287 (797)
470 1moz_A ARL1, ADP-ribosylation 96.4 0.0018 6E-08 47.2 2.9 25 80-104 16-40 (183)
471 2lkc_A Translation initiation 96.4 0.0025 8.7E-08 46.0 3.8 25 81-105 7-31 (178)
472 1c1y_A RAS-related protein RAP 96.4 0.0023 8E-08 45.6 3.5 23 84-106 5-27 (167)
473 2axn_A 6-phosphofructo-2-kinas 96.4 0.002 6.8E-08 55.5 3.6 25 83-107 36-60 (520)
474 3gd7_A Fusion complex of cysti 96.4 0.0022 7.4E-08 53.1 3.6 41 155-195 173-214 (390)
475 2qm8_A GTPase/ATPase; G protei 96.4 0.0024 8.3E-08 51.8 3.9 28 79-106 52-79 (337)
476 2wv9_A Flavivirin protease NS2 96.4 0.0076 2.6E-07 53.5 7.3 25 81-105 240-265 (673)
477 2bbs_A Cystic fibrosis transme 96.4 0.0019 6.6E-08 51.2 3.1 26 81-106 63-88 (290)
478 3q85_A GTP-binding protein REM 96.4 0.0023 7.8E-08 45.9 3.3 21 84-104 4-24 (169)
479 1r2q_A RAS-related protein RAB 96.4 0.0025 8.5E-08 45.6 3.5 23 84-106 8-30 (170)
480 2erx_A GTP-binding protein DI- 96.4 0.0024 8E-08 45.8 3.3 22 84-105 5-26 (172)
481 1p5z_B DCK, deoxycytidine kina 96.3 0.00077 2.6E-08 52.6 0.7 26 81-106 23-48 (263)
482 3rc3_A ATP-dependent RNA helic 96.3 0.012 3.9E-07 52.3 8.2 21 81-101 154-174 (677)
483 2wjg_A FEOB, ferrous iron tran 96.3 0.0024 8.4E-08 46.7 3.3 22 84-105 9-30 (188)
484 1pzn_A RAD51, DNA repair and r 96.3 0.0022 7.6E-08 52.3 3.3 25 82-106 131-155 (349)
485 2yv5_A YJEQ protein; hydrolase 96.3 0.0039 1.3E-07 49.7 4.7 24 82-106 165-188 (302)
486 2obl_A ESCN; ATPase, hydrolase 96.3 0.0028 9.6E-08 51.6 3.9 31 77-107 66-96 (347)
487 4f4c_A Multidrug resistance pr 96.3 0.012 4.1E-07 56.3 8.7 27 80-106 1103-1129(1321)
488 1oxx_K GLCV, glucose, ABC tran 96.3 0.0015 5E-08 53.4 2.2 27 80-106 29-55 (353)
489 3q72_A GTP-binding protein RAD 96.3 0.0022 7.5E-08 45.8 2.9 21 84-104 4-24 (166)
490 1upt_A ARL1, ADP-ribosylation 96.3 0.0029 9.8E-08 45.4 3.5 24 83-106 8-31 (171)
491 2rcn_A Probable GTPase ENGC; Y 96.3 0.0013 4.3E-08 53.8 1.6 25 82-106 215-239 (358)
492 2oil_A CATX-8, RAS-related pro 96.3 0.0028 9.7E-08 46.6 3.5 23 84-106 27-49 (193)
493 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0028 9.7E-08 44.9 3.3 24 84-107 25-48 (149)
494 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0028 9.7E-08 46.2 3.5 23 84-106 6-28 (189)
495 1zu4_A FTSY; GTPase, signal re 96.3 0.0029 9.9E-08 50.9 3.7 24 84-107 107-130 (320)
496 1x6v_B Bifunctional 3'-phospho 96.3 0.0026 8.8E-08 55.7 3.7 26 81-106 51-76 (630)
497 1oyw_A RECQ helicase, ATP-depe 96.3 0.011 3.7E-07 51.0 7.5 32 65-102 29-60 (523)
498 2fn4_A P23, RAS-related protei 96.3 0.0027 9.1E-08 46.0 3.2 23 84-106 11-33 (181)
499 2y8e_A RAB-protein 6, GH09086P 96.3 0.0027 9.3E-08 45.8 3.3 23 84-106 16-38 (179)
500 1tq4_A IIGP1, interferon-induc 96.3 0.0045 1.5E-07 51.6 4.9 24 83-106 70-93 (413)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.94 E-value=5.3e-26 Score=186.96 Aligned_cols=183 Identities=45% Similarity=0.678 Sum_probs=153.3
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248)
..||.++|+|..+++++|++.+++.|..++..++.+|++|+||||+|||++++++++.+.+... ...+.+++.++..+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~~ 90 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRGI 90 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCSH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCcccccH
Confidence 5699999999999999999999999999999998888999999999999999999999865433 446777887776565
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhh
Q 025762 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFL 207 (248)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~ 207 (248)
..+++.+..+...... ....++|++|||+|.++...++.|++.++.++..+.+|+++|....+. +++.+||
T Consensus 91 ~~ir~~i~~~~~~~~~--------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~-~~i~sR~ 161 (340)
T 1sxj_C 91 DVVRNQIKDFASTRQI--------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT-PALLSQC 161 (340)
T ss_dssp HHHHTHHHHHHHBCCS--------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC-HHHHTTS
T ss_pred HHHHHHHHHHHhhccc--------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccc-hhHHhhc
Confidence 5555555443321100 112368999999999999999999999999999999999999999999 9999999
Q ss_pred heeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 208 LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
..+.|.+++.+++ ..++..++..+++..++..+
T Consensus 162 ~~~~~~~l~~~~~----~~~l~~~~~~~~~~i~~~~~ 194 (340)
T 1sxj_C 162 TRFRFQPLPQEAI----ERRIANVLVHEKLKLSPNAE 194 (340)
T ss_dssp EEEECCCCCHHHH----HHHHHHHHHTTTCCBCHHHH
T ss_pred eeEeccCCCHHHH----HHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999 99999999888877766544
No 2
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.93 E-value=9.5e-26 Score=184.28 Aligned_cols=186 Identities=46% Similarity=0.722 Sum_probs=151.1
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
....||.++|+|..|++++|++..++.+..++..+..++++|+||||+|||++|+++++.+.+.. ....++.+++++..
T Consensus 10 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 10 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDER 88 (327)
T ss_dssp HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHH
T ss_pred ccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccC
Confidence 44679999999999999999999999999999998888899999999999999999999974432 23456777776654
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHh
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFS 205 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~ 205 (248)
+...+...+..+.... ....+++.+++|||+|.++.+.++.|++.++..+..+++|+++|....+. +++.+
T Consensus 89 ~~~~~~~~~~~~~~~~--------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~-~~l~s 159 (327)
T 1iqp_A 89 GINVIREKVKEFARTK--------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII-EPIQS 159 (327)
T ss_dssp HHHTTHHHHHHHHHSC--------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC-HHHHH
T ss_pred chHHHHHHHHHHHhhC--------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccC-HHHHh
Confidence 4443333333322110 01113467999999999999999999999999888899999999999999 99999
Q ss_pred hhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 206 FLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 206 r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
||..+.|.|++.+++ ..++..++..+++..++..+.
T Consensus 160 r~~~~~~~~l~~~~~----~~~l~~~~~~~~~~~~~~~~~ 195 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDI----AKRLRYIAENEGLELTEEGLQ 195 (327)
T ss_dssp TEEEEECCCCCHHHH----HHHHHHHHHTTTCEECHHHHH
T ss_pred hCcEEEecCCCHHHH----HHHHHHHHHhcCCCCCHHHHH
Confidence 999999999999999 999999998888877665543
No 3
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.93 E-value=8.3e-26 Score=186.61 Aligned_cols=195 Identities=55% Similarity=0.870 Sum_probs=152.6
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
....||.++|+|..|++++|++.+++.+..++..+..++++|+||||||||++|+++++.+.+.......+..+++.+..
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 44579999999999999999999999999999888777899999999999999999999974432234467778887765
Q ss_pred chHHHHHHHHHhHhhhhcCCC--CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHH
Q 025762 126 GINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSAL 203 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l 203 (248)
+...+......+......... .........+.+++|||+|.++...++.|++.+++.+...++|+++|.+..+. +++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~-~~l 180 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII-DPL 180 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC-HHH
T ss_pred chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCc-chh
Confidence 555555444433321110000 00001123467999999999999999999999999988889999999999999 999
Q ss_pred HhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 204 FSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 204 ~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
.+||..+.|.+++.+++ ..++..++..+++..++..+.
T Consensus 181 ~sR~~~i~~~~~~~~~~----~~~l~~~~~~~~~~i~~~~l~ 218 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNA----IDRLRFISEQENVKCDDGVLE 218 (353)
T ss_dssp HHHSEEEECCCCCHHHH----HHHHHHHHHTTTCCCCHHHHH
T ss_pred hccCceEEeCCCCHHHH----HHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999 999999998888877766554
No 4
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.93 E-value=2.7e-24 Score=165.98 Aligned_cols=184 Identities=46% Similarity=0.714 Sum_probs=149.2
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
...+|.++++|..+++++|++..++.+..++.....++++|+||+|+|||++++++++.+.+. .....++.+++.....
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERG 81 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTC
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccC
Confidence 456899999999999999999999999999988877789999999999999999999987433 2345677777776655
Q ss_pred hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhh
Q 025762 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r 206 (248)
...+...+....... .....+..+|+|||++.++...++.|+.+++.......+|+++|....+. +++.+|
T Consensus 82 ~~~~~~~~~~~~~~~--------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~-~~l~~r 152 (226)
T 2chg_A 82 IDVVRHKIKEFARTA--------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII-EPIQSR 152 (226)
T ss_dssp HHHHHHHHHHHHTSC--------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC-HHHHTT
T ss_pred hHHHHHHHHHHhccc--------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcC-HHHHHh
Confidence 555544444332210 11123467999999999999999999999999888889999999998898 999999
Q ss_pred hheeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 207 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
+..+.|.+++.+++ ..++...+...++..++..+
T Consensus 153 ~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~ 186 (226)
T 2chg_A 153 CAVFRFKPVPKEAM----KKRLLEICEKEGVKITEDGL 186 (226)
T ss_dssp SEEEECCCCCHHHH----HHHHHHHHHHHTCCBCHHHH
T ss_pred CceeecCCCCHHHH----HHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999 88888888888876655443
No 5
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.93 E-value=1e-24 Score=178.24 Aligned_cols=183 Identities=25% Similarity=0.298 Sum_probs=148.2
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
....+|.++|+|..|++++|++..++.+..++..+..++ +++.||||||||++|+++++.+ ...++++++++.
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~~ 84 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSDC 84 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTTC
T ss_pred cccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEccccc
Confidence 556799999999999999999999999999999887666 4667779999999999999998 567888888765
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHH
Q 025762 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNYISRCTFSAL 203 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l 203 (248)
. ...++..+..+...... ...++++||||+|.++ .+.++.|+..++..+....+|++||....+. +++
T Consensus 85 ~-~~~i~~~~~~~~~~~~~---------~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~-~~l 153 (324)
T 3u61_B 85 K-IDFVRGPLTNFASAASF---------DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGII-KPL 153 (324)
T ss_dssp C-HHHHHTHHHHHHHBCCC---------SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSC-TTH
T ss_pred C-HHHHHHHHHHHHhhccc---------CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccC-HHH
Confidence 4 44455444443322111 1246899999999999 9999999999999888899999999999999 999
Q ss_pred HhhhheeeeccCCcccc---chHHHHHHHHHHhhcCccccC-ceee
Q 025762 204 FSFLLFFMFFSLLDQIS---FDKEYIRIIYASTLKFLEGFG-LSLT 245 (248)
Q Consensus 204 ~~r~~~i~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~-~~l~ 245 (248)
.+||..+.|++|+.++. ...+..++..++..+++..++ ..+.
T Consensus 154 ~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (324)
T 3u61_B 154 QSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVA 199 (324)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHH
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 99999999999998874 122366677788889988776 5543
No 6
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.93 E-value=1.2e-25 Score=182.95 Aligned_cols=184 Identities=46% Similarity=0.711 Sum_probs=149.7
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248)
..||.++|+|..|++++|++..++.+..++..+..++++|+||||||||++|+++++.+.+... ...++.+++++..+.
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERGI 82 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-HHHCEEEETTSTTCT
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-cCCeEEEeCccccCh
Confidence 4689999999999999999999999999998888778999999999999999999999854432 345677777765444
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhh
Q 025762 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFL 207 (248)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~ 207 (248)
..+...+..+.... ....+++.+++|||+|.++...++.|++.++..+..+.+|++||....+. +++.+||
T Consensus 83 ~~~~~~~~~~~~~~--------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~-~~l~sr~ 153 (319)
T 2chq_A 83 DVVRHKIKEFARTA--------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII-EPIQSRC 153 (319)
T ss_dssp TTSSHHHHHHHHSC--------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC-HHHHTTC
T ss_pred HHHHHHHHHHHhcC--------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc-hHHHhhC
Confidence 43433333332110 01123468999999999999999999999999888899999999999999 9999999
Q ss_pred heeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 208 LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
..+.|.+++.+++ ..++..++.++++..++..+.
T Consensus 154 ~~i~~~~~~~~~~----~~~l~~~~~~~~~~i~~~~l~ 187 (319)
T 2chq_A 154 AVFRFKPVPKEAM----KKRLLEICEKEGVKITEDGLE 187 (319)
T ss_dssp EEEECCCCCHHHH----HHHHHHHHHTTCCCBCHHHHH
T ss_pred eEEEecCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999 999999999999887766543
No 7
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.92 E-value=1.4e-24 Score=179.39 Aligned_cols=189 Identities=34% Similarity=0.514 Sum_probs=140.2
Q ss_pred chhhccCCCccccccccHHHHHHHHHHH-HcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCcc----------------
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY---------------- 112 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l-~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~---------------- 112 (248)
+|.++|+|..|++++|++.+++.+..++ ..+..++++|+||+|+|||++++++++.+.+...-
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 7999999999999999999999999998 77777789999999999999999999976443210
Q ss_pred -------ccceEEeccCCCcchH--HHHHHHHHhHhhhhcCCCC-CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc
Q 025762 113 -------KSRVLELNASDDRGIN--VVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (248)
Q Consensus 113 -------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~ 182 (248)
...++.++..+..... .+++.+..+.......... ... ...++.+++|||++.++...++.|++.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ---CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0123344433321111 2333333221110000000 000 1235689999999999999999999999998
Q ss_pred CCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCcccc-Ccee
Q 025762 183 SKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGF-GLSL 244 (248)
Q Consensus 183 ~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l 244 (248)
+....+|++|+....+. +++.+||..+.|.+++.+++ ..++..++.++++..+ +..+
T Consensus 162 ~~~~~~Il~t~~~~~l~-~~l~sR~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~l 219 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPII-APIKSQCLLIRCPAPSDSEI----STILSDVVTNERIQLETKDIL 219 (354)
T ss_dssp TTTEEEEEEESCSCSSC-HHHHTTSEEEECCCCCHHHH----HHHHHHHHHHHTCEECCSHHH
T ss_pred cCCCEEEEEeCCHHHHH-HHHHhhceEEecCCcCHHHH----HHHHHHHHHHcCCCCCcHHHH
Confidence 88889999999999999 99999999999999999999 9999999999998877 6554
No 8
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.92 E-value=1e-24 Score=177.81 Aligned_cols=185 Identities=44% Similarity=0.643 Sum_probs=152.1
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
...||.++|+|..+++++|++..++.+..++..+..++++|+||+|+|||++|+++++.+.+.. ....++.+++.+..+
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRG 85 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCS
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccC
Confidence 4569999999999999999999999999999988877899999999999999999999974432 234577788777655
Q ss_pred hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhh
Q 025762 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r 206 (248)
...++..+..+...... ...+++.++||||+|.++...++.|++.+++.+..+.+|++||....+. +++.+|
T Consensus 86 ~~~i~~~~~~~~~~~~~-------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~-~~l~sr 157 (323)
T 1sxj_B 86 IDVVRNQIKHFAQKKLH-------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKII-EPLQSQ 157 (323)
T ss_dssp HHHHHTHHHHHHHBCCC-------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC-HHHHTT
T ss_pred hHHHHHHHHHHHhcccc-------CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhch-hHHHhh
Confidence 55555554443311000 0122367999999999999999999999999888899999999999999 999999
Q ss_pred hheeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 207 LLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 207 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
|..+.|.+++.+++ ..++..++..+++..++..+
T Consensus 158 ~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~ 191 (323)
T 1sxj_B 158 CAILRYSKLSDEDV----LKRLLQIIKLEDVKYTNDGL 191 (323)
T ss_dssp SEEEECCCCCHHHH----HHHHHHHHHHHTCCBCHHHH
T ss_pred ceEEeecCCCHHHH----HHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999 89998888888877666543
No 9
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.90 E-value=3e-23 Score=172.45 Aligned_cols=182 Identities=22% Similarity=0.257 Sum_probs=142.9
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc--------------
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (248)
..+|.++|+|..|++++|++..++.+..++..++.++ ++|+||+|+|||++++++++.+.+....
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999998876544 7999999999999999999998654321
Q ss_pred ----ccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEE
Q 025762 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~i 188 (248)
...+..++.........++......... ...+++.|++|||+|.++...++.|++.+++.+....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~ 152 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSC----------CSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEE
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhc----------cccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEE
Confidence 1123444443322223333333322110 01234579999999999999999999999998888899
Q ss_pred EEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 189 FFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
|++++....+. +++.+||..+.|.+++.+++ ..++..++..+++..+++.+
T Consensus 153 Il~~~~~~~l~-~~l~sr~~~i~~~~l~~~~~----~~~l~~~~~~~~~~~~~~a~ 203 (373)
T 1jr3_A 153 LLATTDPQKLP-VTILSRCLQFHLKALDVEQI----RHQLEHILNEEHIAHEPRAL 203 (373)
T ss_dssp EEEESCGGGSC-HHHHTTSEEEECCCCCHHHH----HHHHHHHHHHHTCCBCHHHH
T ss_pred EEEeCChHhCc-HHHHhheeEeeCCCCCHHHH----HHHHHHHHHHcCCCCCHHHH
Confidence 99999988998 99999999999999999999 99999998888887766544
No 10
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.90 E-value=3.9e-23 Score=174.79 Aligned_cols=162 Identities=25% Similarity=0.319 Sum_probs=126.3
Q ss_pred cchhhccCCCccccccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
.||.++++|..+++++|++.++ ..|...+..+..++++|+||||||||++|+++++.+ ...+..++....
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~------~~~f~~l~a~~~- 86 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA------NADVERISAVTS- 86 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT------TCEEEEEETTTC-
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh------CCCeEEEEeccC-
Confidence 5999999999999999999999 889999999988899999999999999999999998 445666666543
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe--CCCcccChHHH
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRCTFSAL 203 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~--n~~~~~~~~~l 203 (248)
+...++..+........ ..+..+|||||+|.++...++.|+..+++. ...+|++| |....+. +++
T Consensus 87 ~~~~ir~~~~~a~~~~~----------~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~-~aL 153 (447)
T 3pvs_A 87 GVKEIREAIERARQNRN----------AGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELN-SAL 153 (447)
T ss_dssp CHHHHHHHHHHHHHHHH----------TTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSC-HHH
T ss_pred CHHHHHHHHHHHHHhhh----------cCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccC-HHH
Confidence 34444544444332221 123579999999999999999999999984 35567666 4556788 999
Q ss_pred HhhhheeeeccCCccccchHHHHHHHHHHhh
Q 025762 204 FSFLLFFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 204 ~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
.+||.++.|.+++.+++ ..++.+.+..
T Consensus 154 ~sR~~v~~l~~l~~edi----~~il~~~l~~ 180 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDI----EQVLTQAMED 180 (447)
T ss_dssp HTTEEEEECCCCCHHHH----HHHHHHHHHC
T ss_pred hCceeEEeeCCcCHHHH----HHHHHHHHHH
Confidence 99999999999999999 8888888776
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.89 E-value=4.6e-22 Score=155.39 Aligned_cols=182 Identities=21% Similarity=0.249 Sum_probs=137.2
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHhcCCCccc------------
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYK------------ 113 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~------------ 113 (248)
...+|.++++|..+++++|++..++.+..++..+.. +.++|+||+|+|||++++.+++.+.+.....
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 356899999999999999999999999999887654 3589999999999999999999885432110
Q ss_pred ------cceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceE
Q 025762 114 ------SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (248)
Q Consensus 114 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ 187 (248)
..+..+..........+......+.. .....+..+|+|||+|.++...++.|+..++..+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~ 158 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 158 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC----------SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEE
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhh----------chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceE
Confidence 12233333322222222222221110 01123457999999999999999999999998888888
Q ss_pred EEEEeCCCcccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCce
Q 025762 188 FFFICNYISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLS 243 (248)
Q Consensus 188 ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (248)
+|++|+....+. +++.+|+..+.|++++.+++ ..++...+..+++..++..
T Consensus 159 ~i~~t~~~~~~~-~~l~~r~~~i~l~~l~~~e~----~~~l~~~~~~~~~~~~~~~ 209 (250)
T 1njg_A 159 FLLATTDPQKLP-VTILSRCLQFHLKALDVEQI----RHQLEHILNEEHIAHEPRA 209 (250)
T ss_dssp EEEEESCGGGSC-HHHHTTSEEEECCCCCHHHH----HHHHHHHHHHTTCCBCHHH
T ss_pred EEEEeCChHhCC-HHHHHHhhhccCCCCCHHHH----HHHHHHHHHhcCCCCCHHH
Confidence 999999988888 99999999999999999999 8888888888777665544
No 12
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=3.8e-22 Score=163.84 Aligned_cols=171 Identities=17% Similarity=0.150 Sum_probs=131.6
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
....|.++++|..|++++|++..++.+..++.. ....+++|+||||||||++|+++++.+ ...++.+++
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~------~~~~~~~~~ 88 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM------SANIKTTAA 88 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT------TCCEEEEEG
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEecc
Confidence 345799999999999999999999988888764 344589999999999999999999997 445667777
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCC-----------------
Q 025762 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK----------------- 184 (248)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~----------------- 184 (248)
........+...+.. .++.++|||||++.++...++.|+..+++...
T Consensus 89 ~~~~~~~~~~~~~~~----------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 89 PMIEKSGDLAAILTN----------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp GGCCSHHHHHHHHHT----------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred hhccchhHHHHHHHh----------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 655444333333222 12357999999999999999999999987641
Q ss_pred -ceEEEEEeCCCcccChHHHHhhh-heeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 185 -VTRFFFICNYISRCTFSALFSFL-LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 185 -~~~ii~~~n~~~~~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
...+|++||....+. +++++|+ ..+.|.+|+.+++ ..++...+...++..++..+
T Consensus 153 ~~~~~i~atn~~~~l~-~~L~~R~~~~i~l~~~~~~e~----~~il~~~~~~~~~~~~~~~~ 209 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLS-NPLRDRFGMQFRLEFYKDSEL----ALILQKAALKLNKTCEEKAA 209 (338)
T ss_dssp CCCEEEEEESCGGGSC-HHHHTTCSEEEECCCCCHHHH----HHHHHHHHHHTTCEECHHHH
T ss_pred CCeEEEEeCCCccccC-HHHHhhcCEEeeCCCcCHHHH----HHHHHHHHHhcCCCCCHHHH
Confidence 257899999988898 9999999 5899999999999 89999888888876655543
No 13
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.88 E-value=5.2e-22 Score=171.45 Aligned_cols=187 Identities=25% Similarity=0.260 Sum_probs=138.1
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcC-----------------CCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----------------NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~-----------------~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
....+|.++|+|..|++++|++..++.+..++... ..++++|+||||||||++|+++++.+
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-- 101 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-- 101 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--
Confidence 34568999999999999999999999999988651 34689999999999999999999998
Q ss_pred CCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCC----CCCCCCceEEEEeCCCCCCHHH---HHHHHHHHhh
Q 025762 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG----GYPCPPYKIIILDEADSMTEDA---QNALRRTMET 181 (248)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vlilDEi~~l~~~~---~~~L~~~l~~ 181 (248)
+..++++++++......+...+............... .....+..||||||+|.++... .+.|+++++.
T Consensus 102 ----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 102 ----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp ----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred ----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 5678889998877665444433322110000000000 0122456899999999997643 3778888877
Q ss_pred cCCceEEEEEeCCCc-ccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 182 YSKVTRFFFICNYIS-RCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 182 ~~~~~~ii~~~n~~~-~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
.. ..+|++||... ... +++.+||..+.|.+|+.+++ ..++..++..+++..++..+.
T Consensus 178 ~~--~~iIli~~~~~~~~l-~~l~~r~~~i~f~~~~~~~~----~~~L~~i~~~~~~~i~~~~l~ 235 (516)
T 1sxj_A 178 TS--TPLILICNERNLPKM-RPFDRVCLDIQFRRPDANSI----KSRLMTIAIREKFKLDPNVID 235 (516)
T ss_dssp CS--SCEEEEESCTTSSTT-GGGTTTSEEEECCCCCHHHH----HHHHHHHHHHHTCCCCTTHHH
T ss_pred cC--CCEEEEEcCCCCccc-hhhHhceEEEEeCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 43 34777777544 344 77888999999999999999 999999999999888776654
No 14
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.87 E-value=2e-21 Score=156.52 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=121.7
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc-CCCccccceEEeccCC-CcchHHHHHHHHHhHhhhh
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAV 142 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 142 (248)
||+++++.|.+.+..++.++++|+||||+|||++|.++++... +.. ...++.++++.+ ..+.+.+++.+......+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEGENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc-cCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc
Confidence 6888999999999988877899999999999999999998642 211 244677888764 5666777776655432211
Q ss_pred cCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhheeeeccCCccccch
Q 025762 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLFFMFFSLLDQISFD 222 (248)
Q Consensus 143 ~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~i~~~~~~~~~~~~ 222 (248)
.++++|+||||+|.++...+++|++.+|++++.+.+|++|+.+..+. ++++|| .+.|.+++.+++
T Consensus 80 ----------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~-~tI~SR--~~~f~~l~~~~i-- 144 (305)
T 2gno_A 80 ----------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLL-PTIKSR--VFRVVVNVPKEF-- 144 (305)
T ss_dssp ----------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSC-HHHHTT--SEEEECCCCHHH--
T ss_pred ----------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhCh-HHHHce--eEeCCCCCHHHH--
Confidence 12468999999999999999999999999999999999999999999 999999 999999999999
Q ss_pred HHHHHHHHHH
Q 025762 223 KEYIRIIYAS 232 (248)
Q Consensus 223 ~~~~~l~~~~ 232 (248)
..++..++
T Consensus 145 --~~~L~~~~ 152 (305)
T 2gno_A 145 --RDLVKEKI 152 (305)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHh
Confidence 77777765
No 15
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.86 E-value=7.7e-21 Score=155.68 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=122.7
Q ss_pred cccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHhcCCCcc------------------ccceEEeccC--
Q 025762 64 AHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS-- 122 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------------~~~~~~~~~~-- 122 (248)
.-+++.++.+...+..++.+| ++|+||+|+|||++|+++++.+.|.... ..++..+.+.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 346777888988888887666 9999999999999999999999775421 1345666654
Q ss_pred -CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChH
Q 025762 123 -DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201 (248)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~ 201 (248)
...+.+.+++....+.... ..+++.|+||||+|.++.+.++.|++.+|+.+..+.+|++||.+..++ +
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~----------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~-~ 153 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHA----------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL-A 153 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCC----------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC-H
T ss_pred CCCCCHHHHHHHHHHHhhcc----------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc-H
Confidence 3455566665554432211 123468999999999999999999999999999999999999999999 9
Q ss_pred HHHhhhheeeeccCCccccchHHHHHHHHHH
Q 025762 202 ALFSFLLFFMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 202 ~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
+++|||..+.|.+++.+++ ..++...+
T Consensus 154 ti~SRc~~~~~~~~~~~~~----~~~L~~~~ 180 (334)
T 1a5t_A 154 TLRSRCRLHYLAPPPEQYA----VTWLSREV 180 (334)
T ss_dssp HHHTTSEEEECCCCCHHHH----HHHHHHHC
T ss_pred HHhhcceeeeCCCCCHHHH----HHHHHHhc
Confidence 9999999999999999999 77776554
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.85 E-value=5.3e-21 Score=156.05 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=129.5
Q ss_pred hhccCCCccccccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
.++++|..|++++|++..++.+..++.. ....+++|+||||||||++|+++++.+ ...+..+++.....
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~------~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL------GVNLRVTSGPAIEK 76 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH------TCCEEEECTTTCCS
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccccCC
Confidence 4678899999999999998888777753 244689999999999999999999988 34566666666544
Q ss_pred hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC------------------CceEE
Q 025762 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRF 188 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~------------------~~~~i 188 (248)
...+...+.. ..+..++|||||++.++...++.|+..+++.. ....+
T Consensus 77 ~~~l~~~l~~---------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 PGDLAAILAN---------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp HHHHHHHHTT---------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred hHHHHHHHHH---------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 3333222111 01235799999999999999999999998753 24568
Q ss_pred EEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 189 FFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
|++||....+. +++.+|+. .+.|.+++.+++ ..++...+...++..++..+
T Consensus 142 i~~t~~~~~~~-~~l~~R~~~~i~l~~~~~~e~----~~~l~~~~~~~~~~~~~~~~ 193 (324)
T 1hqc_A 142 IGATTRPGLIT-APLLSRFGIVEHLEYYTPEEL----AQGVMRDARLLGVRITEEAA 193 (324)
T ss_dssp EEEESCCSSCS-CSTTTTCSCEEECCCCCHHHH----HHHHHHHHHTTTCCCCHHHH
T ss_pred EEeCCCcccCC-HHHHhcccEEEecCCCCHHHH----HHHHHHHHHhcCCCCCHHHH
Confidence 99999888888 99999994 899999999999 88999888888776665543
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.84 E-value=5.3e-20 Score=153.77 Aligned_cols=173 Identities=17% Similarity=0.158 Sum_probs=126.8
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccce
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~ 116 (248)
..|.+++++..|++++|++.+++.|..++.. ....+++|+||||||||++|++++..+ ...+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~------~~~~ 176 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES------NATF 176 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEE
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh------cCcE
Confidence 3577788889999999999999999887732 234689999999999999999999997 5677
Q ss_pred EEeccCCCcchHH--HHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhhcC
Q 025762 117 LELNASDDRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETYS 183 (248)
Q Consensus 117 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l-----------~~~~~~~L~~~l~~~~ 183 (248)
+.+++.+...... ....+......... ...++|||||+|.+ ....++.|+..++...
T Consensus 177 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----------~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 177 FNISAASLTSKYVGEGEKLVRALFAVARE----------LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEECSCCC-------CHHHHHHHHHHHHH----------SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred EEeeHHHhhccccchHHHHHHHHHHHHHh----------cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 8888876533211 11111111111111 11369999999988 3456677888887554
Q ss_pred ----CceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 184 ----KVTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 184 ----~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
....+|.+||.+..++ +++++||. .+.|..|+.++. ..++..++...+....+.
T Consensus 247 ~~~~~~v~vI~atn~~~~l~-~~l~~R~~~~i~i~~p~~~~r----~~il~~~~~~~~~~l~~~ 305 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELD-EAVLRRFIKRVYVSLPNEETR----LLLLKNLLCKQGSPLTQK 305 (389)
T ss_dssp -----CEEEEEEESCGGGCC-HHHHTTCCEEEECCCCCHHHH----HHHHHHHHTTSCCCSCHH
T ss_pred ccCCCCEEEEEecCCchhcC-HHHHcCcceEEEcCCcCHHHH----HHHHHHHHHhcCCCCCHH
Confidence 3466888899999999 99999997 699999999999 899988888877665544
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.83 E-value=5.6e-20 Score=149.87 Aligned_cols=171 Identities=20% Similarity=0.110 Sum_probs=122.7
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceE
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (248)
.|...+.+..|++++|++.+++.|..++.. ....+++|+||||||||++|+++++.+ ...++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~ 80 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFF 80 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH------TCEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH------CCCEE
Confidence 456667778999999999999999887721 124579999999999999999999998 45666
Q ss_pred EeccCCCcch--HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhc--
Q 025762 118 ELNASDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY-- 182 (248)
Q Consensus 118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~-----------~~~~~L~~~l~~~-- 182 (248)
.+++++.... ......+......... ...+||||||+|.+.. ..++.|+..++..
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~----------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMARE----------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHHH----------TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHHh----------cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 6766543111 1111112211111111 1236999999998853 4567788888754
Q ss_pred -CCceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccC
Q 025762 183 -SKVTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFG 241 (248)
Q Consensus 183 -~~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (248)
.....+|.+||.+..++ +++++||. .+.+..|+.++. ..+++..+...+....+
T Consensus 151 ~~~~v~vi~atn~~~~ld-~al~~Rf~~~i~~~~p~~~~r----~~il~~~~~~~~~~~~~ 206 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLD-SAIRRRFERRIYIPLPDLAAR----TTMFEINVGDTPCVLTK 206 (322)
T ss_dssp SCCCEEEEEEESCGGGSC-HHHHHHCCEEEECCCCCHHHH----HHHHHHHHTTCCCCCCH
T ss_pred cCCceEEEEecCChhhCC-HHHHcccCeEEEeCCCCHHHH----HHHHHHHhccCCCCCCH
Confidence 34566788899999999 99999996 688999999999 88888888776655443
No 19
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=8.2e-20 Score=151.56 Aligned_cols=183 Identities=17% Similarity=0.145 Sum_probs=124.7
Q ss_pred ccchhhccCCCc-cccccccHHHHHH---HHHHHHcCCC--CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 48 SQPWVEKYRPKQ-VKDVAHQEEVVRV---LTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 48 ~~~~~~~~~~~~-~~~~~g~~~~~~~---l~~~l~~~~~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
..++.+.++|.. |++++|++..++. +...+..+.. .+++|+||||||||++|+++++.+.+. .+++.+.+
T Consensus 30 ~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~~~ 105 (368)
T 3uk6_A 30 GLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAIAG 105 (368)
T ss_dssp SCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEEEG
T ss_pred ccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCcccccc
Confidence 345667788877 9999999988766 4555555543 489999999999999999999998432 12222222
Q ss_pred CCC-----cc--------------------------------------------------hHHHHHHHHHhHhhhhcCCC
Q 025762 122 SDD-----RG--------------------------------------------------INVVRTKIKTFAAVAVGSGQ 146 (248)
Q Consensus 122 ~~~-----~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 146 (248)
... .. ...++..+..........+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g- 184 (368)
T 3uk6_A 106 SEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEG- 184 (368)
T ss_dssp GGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHT-
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhc-
Confidence 110 00 1111111111111100000
Q ss_pred CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC------------CCcccChHHHHhhhheeeecc
Q 025762 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRCTFSALFSFLLFFMFFS 214 (248)
Q Consensus 147 ~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n------------~~~~~~~~~l~~r~~~i~~~~ 214 (248)
......+||||||+|.++.+.++.|++.+++..... ++++++ .+..++ +++++||..+.|++
T Consensus 185 ----~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~-~~l~sR~~~i~~~~ 258 (368)
T 3uk6_A 185 ----KAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIP-IDLLDRLLIVSTTP 258 (368)
T ss_dssp ----C---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCC-HHHHTTEEEEEECC
T ss_pred ----cccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCC-HHHHhhccEEEecC
Confidence 000112599999999999999999999998876554 455554 356788 99999999999999
Q ss_pred CCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 215 LLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
|+.+++ ..++...+..+++..+++.+.
T Consensus 259 ~~~~e~----~~il~~~~~~~~~~~~~~~l~ 285 (368)
T 3uk6_A 259 YSEKDT----KQILRIRCEEEDVEMSEDAYT 285 (368)
T ss_dssp CCHHHH----HHHHHHHHHHTTCCBCHHHHH
T ss_pred CCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 999999 999999998888877766543
No 20
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.5e-19 Score=146.13 Aligned_cols=159 Identities=20% Similarity=0.228 Sum_probs=118.0
Q ss_pred cCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
...-.|+++.|.+++++.|.+.+.. ..+.++||+||||||||++|+++|.++ ..+++.+.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~ 215 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSG 215 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEG
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEh
Confidence 3345899999999999988777632 234579999999999999999999999 667777877
Q ss_pred CCCcch------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh
Q 025762 122 SDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMET 181 (248)
Q Consensus 122 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~ 181 (248)
++..+. ..++..+..... . ...||||||+|.+. ....+.|+..|+.
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~---~-----------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMARE---H-----------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHH---T-----------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHhhccccchHHHHHHHHHHHHHH---h-----------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 665322 223333332211 1 13699999999873 1245667777775
Q ss_pred cC--CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 182 YS--KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 182 ~~--~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
.. ....+|.+||.+..++ +++++ ||. .|.|+.|+.++. .++++.++.+.++.
T Consensus 282 ~~~~~~V~vIaATNrpd~LD-pAllRpGRfD~~I~i~lPd~~~R----~~Il~~~~~~~~l~ 338 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILD-PALLRPGRIDRKIEFPPPSVAAR----AEILRIHSRKMNLT 338 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSC-HHHHSTTSSCCEEECCCCCHHHH----HHHHHHHHTTSBCC
T ss_pred cCCCCCeEEEeccCChhhCC-HhHcCCCcCceEEEcCCcCHHHH----HHHHHHHhcCCCCC
Confidence 44 3456889999999999 99997 887 699999999999 88888777766554
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=4.2e-20 Score=149.78 Aligned_cols=165 Identities=20% Similarity=0.129 Sum_probs=120.2
Q ss_pred cccccHHHHHHHHHHHH---------------cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc-cccceEEeccCCCc
Q 025762 62 DVAHQEEVVRVLTNTLE---------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDR 125 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---------------~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~-~~~~~~~~~~~~~~ 125 (248)
+++|++.+++.+...+. .....+++|+||||||||++|+++++.+..... ....++.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 68999999988876654 234557999999999999999999999843322 12356666665442
Q ss_pred chH--HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 126 GIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 126 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l---------~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
... ............. ..++|||||+|.+ +...++.|++.++.......+|+++|.
T Consensus 112 ~~~~g~~~~~~~~~~~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA-------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH-------------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred hhcccccHHHHHHHHHhc-------------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 210 0011111111111 1359999999977 788999999999998888889999975
Q ss_pred Cc-----ccChHHHHhhh-heeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 195 IS-----RCTFSALFSFL-LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 195 ~~-----~~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
.. .+. +++++|| ..+.|++|+.+++ ..++..++.+.++..++..+
T Consensus 179 ~~~~~~~~~~-~~l~~R~~~~i~~~~~~~~~~----~~il~~~l~~~~~~~~~~~~ 229 (309)
T 3syl_A 179 DRMENFFQSN-PGFRSRIAHHIEFPDYSDEEL----FEIAGHMLDDQNYQMTPEAE 229 (309)
T ss_dssp HHHHHHHHHS-TTHHHHEEEEEEECCCCHHHH----HHHHHHHHHHTTCEECHHHH
T ss_pred HHHHHHHhhC-HHHHHhCCeEEEcCCcCHHHH----HHHHHHHHHHcCCCCCHHHH
Confidence 32 356 8999999 6899999999999 99999999888877666544
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=7.2e-19 Score=141.75 Aligned_cols=168 Identities=18% Similarity=0.125 Sum_probs=122.1
Q ss_pred chhhccCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceE
Q 025762 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (248)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (248)
.|..++++..|++++|++.+++.+..++.. ....+++|+||||||||++|++++..+ ...++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~------~~~~~ 83 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC------SATFL 83 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT------TCEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeE
Confidence 355667778999999999999999887633 235689999999999999999999998 44566
Q ss_pred EeccCCCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHh
Q 025762 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (248)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~ 180 (248)
.+++++... ....+..+.... . ...++|+|||+|.+. ...++.|+..++
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~---~-----------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVAR---H-----------MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHH---H-----------TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHH---H-----------cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 676655422 111222221111 1 123699999998873 456677888888
Q ss_pred hcCC-----ceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 181 TYSK-----VTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 181 ~~~~-----~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
.... ...+|.+||.+..++ +++.+||. .+.+..|+.++. ..++..++...+...++.
T Consensus 150 ~~~~~~~~~~v~vi~~tn~~~~l~-~~l~~R~~~~i~~~~p~~~~r----~~il~~~~~~~~~~~~~~ 212 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNRPQELD-EAALRRFTKRVYVSLPDEQTR----ELLLNRLLQKQGSPLDTE 212 (297)
T ss_dssp HCC------CEEEEEEESCGGGBC-HHHHHHCCEEEECCCCCHHHH----HHHHHHHHGGGSCCSCHH
T ss_pred cccccCCCCcEEEEeecCChhhCC-HHHHhhCCeEEEeCCcCHHHH----HHHHHHHHHhcCCCCCHH
Confidence 7653 356888899999999 99999996 688888888888 888888887776554443
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.81 E-value=5.4e-19 Score=145.96 Aligned_cols=170 Identities=18% Similarity=0.109 Sum_probs=122.0
Q ss_pred hhccCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEe
Q 025762 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (248)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (248)
..++++..|++++|++.+++.|...+.. ....+++|+||||||||++|++++..+ ...++.+
T Consensus 75 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i 148 (357)
T 3d8b_A 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS------GATFFSI 148 (357)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEE
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc------CCeEEEE
Confidence 4456678999999999999999887742 345689999999999999999999998 4566777
Q ss_pred ccCCCcch--HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhc----
Q 025762 120 NASDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY---- 182 (248)
Q Consensus 120 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~---- 182 (248)
++++.... .........+...... ...++|||||+|.+. ...++.|+..++..
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~~----------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVARC----------QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHHH----------TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred ehHHhhccccchHHHHHHHHHHHHHh----------cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 77654221 1111111111111111 124799999998772 24566777777743
Q ss_pred CCceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCc
Q 025762 183 SKVTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGL 242 (248)
Q Consensus 183 ~~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (248)
.....+|++||.+..++ +++++||. .+.+..|+.++. ..++..++...++..++.
T Consensus 219 ~~~v~vI~atn~~~~l~-~~l~~Rf~~~i~i~~p~~~~r----~~il~~~~~~~~~~l~~~ 274 (357)
T 3d8b_A 219 EDRILVVGATNRPQEID-EAARRRLVKRLYIPLPEASAR----KQIVINLMSKEQCCLSEE 274 (357)
T ss_dssp CCCEEEEEEESCGGGBC-HHHHTTCCEEEECCCCCHHHH----HHHHHHHHHTSCBCCCHH
T ss_pred CCCEEEEEecCChhhCC-HHHHhhCceEEEeCCcCHHHH----HHHHHHHHhhcCCCccHH
Confidence 24566888999999999 99999997 689999999999 888888888777665443
No 24
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.81 E-value=4.1e-19 Score=146.50 Aligned_cols=165 Identities=19% Similarity=0.108 Sum_probs=116.1
Q ss_pred hhhccCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEE
Q 025762 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (248)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (248)
+...+.+..|++++|++.+++.|..++.. ....+++|+||||||||++|+++++.+ ...++.
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~------~~~~~~ 114 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFFS 114 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH------TCEEEE
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEE
Confidence 44556677899999999999999877631 123479999999999999999999998 445666
Q ss_pred eccCCCc------chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh
Q 025762 119 LNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMET 181 (248)
Q Consensus 119 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~-----------~~~~~L~~~l~~ 181 (248)
+++.+.. ....++..+.... . ...+||||||+|.+.. ..++.|+..++.
T Consensus 115 v~~~~l~~~~~g~~~~~~~~~f~~a~----~----------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 180 (355)
T 2qp9_X 115 VSSSDLVSKWMGESEKLVKQLFAMAR----E----------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG 180 (355)
T ss_dssp EEHHHHHSCC---CHHHHHHHHHHHH----H----------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHH
T ss_pred eeHHHHhhhhcchHHHHHHHHHHHHH----H----------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhc
Confidence 6554321 1112222222111 0 1246999999999863 356778888875
Q ss_pred c---CCceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCcccc
Q 025762 182 Y---SKVTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGF 240 (248)
Q Consensus 182 ~---~~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (248)
. .....+|.+||.+..++ +++++||. .+.+.+|+.++. ..+++.++...+....
T Consensus 181 ~~~~~~~v~vI~atn~~~~ld-~al~rRf~~~i~i~~P~~~~r----~~il~~~l~~~~~~~~ 238 (355)
T 2qp9_X 181 VGNDSQGVLVLGATNIPWQLD-SAIRRRFERRIYIPLPDLAAR----TTMFEINVGDTPSVLT 238 (355)
T ss_dssp CC---CCEEEEEEESCGGGSC-HHHHHTCCEEEECCCCCHHHH----HHHHHHHHTTSCBCCC
T ss_pred ccccCCCeEEEeecCCcccCC-HHHHcccCEEEEeCCcCHHHH----HHHHHHHHhhCCCCCC
Confidence 4 34566888999999999 99999995 689999999999 8888888877665433
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=1.1e-18 Score=139.75 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=115.3
Q ss_pred CCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
.+..|++++|.+.+++.|...+.. ....+++|+||||||||++|++++..+ ...++.+.+.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~ 85 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGS 85 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehH
Confidence 346799999999999988877643 355689999999999999999999998 4456666655
Q ss_pred CCcc--hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhh-----cCC
Q 025762 123 DDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMET-----YSK 184 (248)
Q Consensus 123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l-----------~~~~~~~L~~~l~~-----~~~ 184 (248)
+... ................. ...+||+|||+|.+ ....+..|..+++. ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKE----------KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHH----------TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHhccchHHHHHHHHHHHHHH----------cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 4321 11111111211111111 11369999999987 44556666666653 234
Q ss_pred ceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 185 VTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 185 ~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
...+|++||.+..++ +++.+ |+. .+.|++|+.++. .++++..+...++.
T Consensus 156 ~~~vI~ttn~~~~l~-~~l~~~~Rf~~~i~~~~p~~~~r----~~il~~~~~~~~~~ 207 (285)
T 3h4m_A 156 DVKIIGATNRPDILD-PAILRPGRFDRIIEVPAPDEKGR----LEILKIHTRKMNLA 207 (285)
T ss_dssp SEEEEEECSCGGGBC-HHHHSTTSEEEEEECCCCCHHHH----HHHHHHHHTTSCBC
T ss_pred CEEEEEeCCCchhcC-HHHcCCCcCCeEEEECCCCHHHH----HHHHHHHHhcCCCC
Confidence 567899999999999 99998 886 799999999999 88888887776654
No 26
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=140.46 Aligned_cols=162 Identities=19% Similarity=0.105 Sum_probs=116.9
Q ss_pred cCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
.....|+++.|.+.+++.|.+.+.. ....+++|+||||||||++|+++++.+. ...++.++++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~~ 80 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSS 80 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEhH
Confidence 4456899999999999998877631 1235799999999999999999999972 2245556655
Q ss_pred CCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhc---
Q 025762 123 DDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--- 182 (248)
Q Consensus 123 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~--- 182 (248)
+... ...++..+..... ....+|||||+|.+. ....+.|+..++..
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARE--------------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHH--------------TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred HHHhhhhhHHHHHHHHHHHHHHh--------------cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 4321 2223333322111 123699999999882 24567778888764
Q ss_pred CCceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCcccc
Q 025762 183 SKVTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGF 240 (248)
Q Consensus 183 ~~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (248)
.....+|.+||.+..++ +++++||. .+.++.|+.++. ..+++.++...+...+
T Consensus 147 ~~~v~vI~atn~~~~ld-~al~rRf~~~i~i~~P~~~~r----~~il~~~l~~~~~~l~ 200 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLD-SAIRRRFEKRIYIPLPEPHAR----AAMFKLHLGTTQNSLT 200 (322)
T ss_dssp CTTEEEEEEESCTTTSC-HHHHHTCCEEEECCCCCHHHH----HHHHHHHHTTCCBCCC
T ss_pred CCCEEEEEecCCcccCC-HHHHhhcCeEEEeCCcCHHHH----HHHHHHHHhcCCCCCC
Confidence 34566888899999999 99999996 689999999999 8888888777665433
No 27
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.79 E-value=2.6e-18 Score=140.67 Aligned_cols=172 Identities=21% Similarity=0.161 Sum_probs=122.1
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcC-----CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEec
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~-----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (248)
.-...|...++|..+++++|++.+++.+...+..+ ...+++|+||||+||||++++++..+.+ .+....
T Consensus 10 ~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~------~~~~~s 83 (334)
T 1in4_A 10 TVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT------NIHVTS 83 (334)
T ss_dssp -------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC------CEEEEE
T ss_pred HHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEe
Confidence 34456789999999999999999988887777543 3468999999999999999999999833 222233
Q ss_pred cCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------------
Q 025762 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------- 183 (248)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~----------------- 183 (248)
.........+...... ....+|++|||++.+.+...+.|+..++.+.
T Consensus 84 g~~~~~~~~l~~~~~~----------------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 84 GPVLVKQGDMAAILTS----------------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp TTTCCSHHHHHHHHHH----------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC--------------
T ss_pred chHhcCHHHHHHHHHH----------------ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCccccccccc
Confidence 3222222222221111 0124699999999999888888888887542
Q ss_pred -CceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCccccCcee
Q 025762 184 -KVTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 184 -~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 244 (248)
....++.+++.+..+. +.+++||. .+.|.+++.+++ ..++++.+...++..+++.+
T Consensus 148 l~~~~li~at~~~~~Ls-~~l~sR~~l~~~Ld~~~~~~l----~~iL~~~~~~~~~~~~~~~~ 205 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLS-SPLRSRFGIILELDFYTVKEL----KEIIKRAASLMDVEIEDAAA 205 (334)
T ss_dssp -CCCEEEEEESCGGGSC-HHHHTTCSEEEECCCCCHHHH----HHHHHHHHHHTTCCBCHHHH
T ss_pred CCCeEEEEecCCcccCC-HHHHHhcCceeeCCCCCHHHH----HHHHHHHHHHcCCCcCHHHH
Confidence 1234666788888999 99999997 588999999999 99999888887777665543
No 28
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.6e-18 Score=142.05 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=116.1
Q ss_pred cCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
...-.|+++.|.+++++.|.+.+.. ..+.++||+||||||||++|+++|.++ ...++.++.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~ 249 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVG 249 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEES
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEH
Confidence 3446899999999999888776632 234579999999999999999999999 567777777
Q ss_pred CCCcch------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh
Q 025762 122 SDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMET 181 (248)
Q Consensus 122 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~ 181 (248)
++..+. ..++..+..... . ...||||||+|.+. ......|+..++.
T Consensus 250 s~l~sk~vGesek~ir~lF~~Ar~---~-----------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 250 SELIQKYLGDGPRLCRQIFKVAGE---N-----------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp GGGCCSSSSHHHHHHHHHHHHHHH---T-----------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhhccCchHHHHHHHHHHHHHh---c-----------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 654322 223333322211 1 13699999999772 2245566777765
Q ss_pred cC--CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 182 YS--KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 182 ~~--~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
.. ....+|.+||.+..++ +++++ |+. .|.|..|+.++. ..+++.++.+..+.
T Consensus 316 ~~~~~~ViVIaATNrpd~LD-pALlRpGRfD~~I~v~lPd~~~R----~~Il~~~l~~~~l~ 372 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLD-PALIRPGRIDRKILFENPDLSTK----KKILGIHTSKMNLS 372 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCC-TTSSCTTTEEEEECCCCCCHHHH----HHHHHHHHTTSCBC
T ss_pred cCCCCCEEEEEeCCChhhcC-HHHhcCCceeEEEEcCCcCHHHH----HHHHHHHhcCCCCC
Confidence 43 4456899999999999 99987 887 599999999999 88888877766544
No 29
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-18 Score=145.56 Aligned_cols=159 Identities=22% Similarity=0.216 Sum_probs=114.9
Q ss_pred cCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
.....|+++.|.+.+++.|.+.+.. ..+.++||+||||||||++|+++|.++ +.+++.+++
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~ 248 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT------NATFLKLAA 248 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEeh
Confidence 3445799999999999988766421 235579999999999999999999999 567777777
Q ss_pred CCCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------H---HHHHHHHHHHhh
Q 025762 122 SDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------E---DAQNALRRTMET 181 (248)
Q Consensus 122 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~---~~~~~L~~~l~~ 181 (248)
++... ...++..+..... .. ..||||||+|.+. . ...+.|+..|+.
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~---~a-----------P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKE---KA-----------PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHH---HC-----------SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhcccchHHHHHHHHHHHHHh---cC-----------CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 65432 2223333322221 11 2699999998761 1 234567777776
Q ss_pred cCC--ceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 182 YSK--VTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 182 ~~~--~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
... ...+|.+||.+..++ +++++ ||. .|.|+.|+.++. ..+++.++.+..+.
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD-~AllRpGRfD~~I~i~lPd~~~R----~~Il~~~~~~~~~~ 371 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLD-PALLRSGRLDRKIEFPLPSEDSR----AQILQIHSRKMTTD 371 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCC-TTTCSTTSEEEEEECCCCCHHHH----HHHHHHHHHHSCBC
T ss_pred cCCCCCEEEEEeCCCchhcC-HhHhcCCceeEEEEeCCcCHHHH----HHHHHHHhcCCCCC
Confidence 543 456788999999999 99977 887 699999999999 88887777665543
No 30
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.3e-18 Score=142.07 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=114.4
Q ss_pred CccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
-.|+++.|.+++++.|.+.+.. ..+.++||+||||||||++|+++|.++ ...++.+.+++.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L 279 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSEL 279 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHh
Confidence 5789999999999988776532 245679999999999999999999999 567777777654
Q ss_pred cc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhhcC-
Q 025762 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYS- 183 (248)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~~~- 183 (248)
.+ ...++..+..... . ...|||+||+|.+. ......++..|+...
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~---~-----------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMART---K-----------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHH---T-----------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred hcccCCHHHHHHHHHHHHHHh---c-----------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 32 2223333332211 1 13699999999873 124455666666543
Q ss_pred -CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 184 -KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 184 -~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
....+|.+||.+..++ +++++ ||. .|.|+.|+.++. ..+++.++....+.
T Consensus 346 ~~~ViVIaATNrpd~LD-pALlRpGRFD~~I~i~lPd~~~R----~~Ilk~~l~~~~l~ 399 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLD-PALLRPGRIDRKVEFSLPDLEGR----ANIFRIHSKSMSVE 399 (467)
T ss_dssp TTTEEEEEECSCTTSBC-HHHHSTTTCCEEECCCCCCHHHH----HHHHHHHHTTSCBC
T ss_pred CCcEEEEeCCCCcccCC-hhhhccccccEEEEeCCcCHHHH----HHHHHHHhcCCCCC
Confidence 3456888999999999 99987 888 699999999999 88888777765544
No 31
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.8e-18 Score=142.07 Aligned_cols=156 Identities=21% Similarity=0.172 Sum_probs=114.5
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
.-.|+++.|.+++++.|.+.+.. ..+.++||+||||||||++|+++|.++ +.+++.+++++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~ 250 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASG 250 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhh
Confidence 35799999999999888777632 134579999999999999999999999 56777777766
Q ss_pred Ccch------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhhcC
Q 025762 124 DRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYS 183 (248)
Q Consensus 124 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~~~ 183 (248)
..+. ..++..+.... .. ...||||||+|.+. ....+.|+..|+...
T Consensus 251 l~sk~~Gese~~ir~~F~~A~---~~-----------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAK---EH-----------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHH---HS-----------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred hccccchHHHHHHHHHHHHHH---hc-----------CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 5321 12222222211 11 13699999999872 224566777887654
Q ss_pred --CceEEEEEeCCCcccChHHHHhh--hh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 184 --KVTRFFFICNYISRCTFSALFSF--LL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 184 --~~~~ii~~~n~~~~~~~~~l~~r--~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
....+|.+||.+..++ ++++++ |. .|.|+.|+.++. ..+++.++.+..+
T Consensus 317 ~~~~vivI~ATNrp~~LD-pAllRpGRfD~~I~i~lPd~~~R----~~Il~~~~~~~~~ 370 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLD-PALLRPGRLDRKVEIPLPNEAGR----LEIFKIHTAKVKK 370 (437)
T ss_dssp CTTSSEEEEEESSTTSSC-TTTTSTTSEEEEECCCCCCHHHH----HHHHHHHHHTSCB
T ss_pred CCCCeEEEEecCCchhhC-HHHhCCCccceeeecCCcCHHHH----HHHHHHHhcCCCC
Confidence 3467899999999999 999875 66 699999999999 8888877766554
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.78 E-value=6.1e-18 Score=133.79 Aligned_cols=162 Identities=19% Similarity=0.133 Sum_probs=105.7
Q ss_pred CccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 58 KQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
..|++++|.+.+++.+.+.+.. ....+++|+||||||||++|+++++.+ ...++.+++.+..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEFV 76 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTTS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHHH
Confidence 4688999999998888665531 234579999999999999999999998 4456666665542
Q ss_pred ch--HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC------------HHHH---HHHHHHHhhc--CCce
Q 025762 126 GI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQ---NALRRTMETY--SKVT 186 (248)
Q Consensus 126 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~------------~~~~---~~L~~~l~~~--~~~~ 186 (248)
.. ................ ...++|+|||+|.+. ...+ +.|+..++.. ....
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~----------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARA----------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHH----------TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred hhccChhHHHHHHHHHHHHh----------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 11 1111111111111111 013699999999983 2223 3444444442 2456
Q ss_pred EEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcccc
Q 025762 187 RFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGF 240 (248)
Q Consensus 187 ~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (248)
.+|.++|.+..++ +++.+ |+. .+.|.+|+.++. ..+++..+...++...
T Consensus 147 ~vi~~tn~~~~ld-~~l~~~~R~~~~i~i~~p~~~~r----~~il~~~~~~~~~~~~ 198 (262)
T 2qz4_A 147 IVLASTNRADILD-GALMRPGRLDRHVFIDLPTLQER----REIFEQHLKSLKLTQS 198 (262)
T ss_dssp EEEEEESCGGGGG-SGGGSTTSCCEEEECCSCCHHHH----HHHHHHHHHHTTCCBT
T ss_pred EEEecCCChhhcC-HHHhcCCcCCeEEEeCCcCHHHH----HHHHHHHHHhCCCCcc
Confidence 7888899988888 89988 885 689999999999 8888888877766543
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.78 E-value=5.7e-18 Score=144.17 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=72.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCC-------------CcccChHHHHhhhheeeeccCCccccchH
Q 025762 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY-------------ISRCTFSALFSFLLFFMFFSLLDQISFDK 223 (248)
Q Consensus 157 ~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~-------------~~~~~~~~l~~r~~~i~~~~~~~~~~~~~ 223 (248)
+|+||||+|.++.+.+++|++.||+++.. .+|+.||. +..++ ++++|||..+.|.+++.+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~-~~i~sR~~~~~~~~~~~~e~--- 371 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIP-LDLLDRVMIIRTMLYTPQEM--- 371 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCC-HHHHTTEEEEECCCCCHHHH---
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCC-hhHHhhcceeeCCCCCHHHH---
Confidence 59999999999999999999999998877 57777743 67788 99999999999999999999
Q ss_pred HHHHHHHHHhhcCccccCcee
Q 025762 224 EYIRIIYASTLKFLEGFGLSL 244 (248)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~l 244 (248)
..+|+..+..+++..++..+
T Consensus 372 -~~iL~~~~~~~~~~~~~~~~ 391 (456)
T 2c9o_A 372 -KQIIKIRAQTEGINISEEAL 391 (456)
T ss_dssp -HHHHHHHHHHHTCCBCHHHH
T ss_pred -HHHHHHHHHHhCCCCCHHHH
Confidence 99999999888887666554
No 34
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.78 E-value=4.2e-18 Score=137.51 Aligned_cols=160 Identities=20% Similarity=0.198 Sum_probs=115.5
Q ss_pred ccCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEec
Q 025762 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (248)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (248)
...+..|++++|.+.+++.|.+++.. ..+.+++|+||||||||++|++++..+ ...++.++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~ 81 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIK 81 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEEC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEE
Confidence 34456889999999999888877643 345579999999999999999999998 34566666
Q ss_pred cCCCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHh
Q 025762 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTME 180 (248)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~--------------~~~~L~~~l~ 180 (248)
+.+... ...+...+.... . ...+++||||+|.+... .++.|+..++
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~---~-----------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKAR---Q-----------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHH---H-----------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred hHHHHhhhcCchHHHHHHHHHHHH---h-----------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 543211 111122221111 0 12369999999987543 4677888887
Q ss_pred hcC--CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 181 TYS--KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 181 ~~~--~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
... ....+|++||.+..++ +++++ |+. .+.+++|+.++. ..+++..+...++.
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld-~al~r~gRf~~~i~i~~p~~~~r----~~il~~~l~~~~~~ 205 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIID-PAILRPGRLDQLIYIPLPDEKSR----VAILKANLRKSPVA 205 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSC-GGGGSTTSSCEEEECCCCCHHHH----HHHHHHHHTTSCBC
T ss_pred cccCCCCEEEEEecCCccccC-hHHhcCCccceEEecCCcCHHHH----HHHHHHHHccCCCC
Confidence 533 4567899999999998 99988 886 699999999999 88888888776653
No 35
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.78 E-value=5e-19 Score=144.85 Aligned_cols=168 Identities=17% Similarity=0.114 Sum_probs=118.5
Q ss_pred cchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH
Q 025762 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (248)
.+|.+++++..+..++|++.+++.+..++..+. +++|+||||||||++|+++++.+ ...+..+.+.......
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~------~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM------DLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT------TCCEEEEECCTTCCHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh------CCCeEEEecCCCCChh
Confidence 468888999899999999999999988887754 89999999999999999999998 3344445443221111
Q ss_pred HHHHHHHHhHhhhhcC--CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEEeCCC
Q 025762 129 VVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI 195 (248)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~-----------~~~~~ii~~~n~~ 195 (248)
. ............ ....+.. ..++++|||++.+++..++.|++.++++ +....++.++|+.
T Consensus 87 ~---l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 87 D---LIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp H---HHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred h---cCCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 1 111100000000 0001111 1369999999999999999999999975 3345566666743
Q ss_pred c-----ccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhc
Q 025762 196 S-----RCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 196 ~-----~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
. .++ +++++||. .+.+.+|+.++. .++++..+..+
T Consensus 161 ~~~~~~~l~-~~l~~Rf~~~i~i~~p~~~~~----~~il~~~~~~~ 201 (331)
T 2r44_A 161 EQEGTYPLP-EAQVDRFMMKIHLTYLDKESE----LEVMRRVSNMN 201 (331)
T ss_dssp CCSCCCCCC-HHHHTTSSEEEECCCCCHHHH----HHHHHHHHCTT
T ss_pred cccCcccCC-HHHHhheeEEEEcCCCCHHHH----HHHHHhccccC
Confidence 2 377 99999998 499999999999 88887776543
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.78 E-value=2.1e-18 Score=134.51 Aligned_cols=172 Identities=11% Similarity=0.134 Sum_probs=122.8
Q ss_pred ccchhhccCC-Cccccccc---cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 48 SQPWVEKYRP-KQVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~g---~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
..++..++++ ..|+++++ ++.+...+..+.......+++|+||||||||++++++++.+...+ ..+..+++.+
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~---~~~~~~~~~~ 90 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE---RRSFYIPLGI 90 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEGGG
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHH
Confidence 4467777777 68888886 357788888888876778999999999999999999999984332 2444454443
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhcCCce--EEEEEeCCCc---
Q 025762 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYSKVT--RFFFICNYIS--- 196 (248)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~--~~~L~~~l~~~~~~~--~ii~~~n~~~--- 196 (248)
.... +..... ...+..+|+|||++.++... ++.|+.+++...... .+|++++...
T Consensus 91 ~~~~--~~~~~~----------------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 91 HASI--STALLE----------------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGGS--CGGGGT----------------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHH--HHHHHH----------------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 2111 000000 01224699999999997655 788888887654332 5788887443
Q ss_pred -ccChHHHHhhh---heeeeccCCccccchHHHHHHHHHHhhcCccccCceee
Q 025762 197 -RCTFSALFSFL---LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLT 245 (248)
Q Consensus 197 -~~~~~~l~~r~---~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 245 (248)
... +++.+|+ ..+.|.+++.++. ..++...+...++..++..+.
T Consensus 153 ~~~~-~~l~~r~~~~~~i~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~ 200 (242)
T 3bos_A 153 GFVL-PDLVSRMHWGLTYQLQPMMDDEK----LAALQRRAAMRGLQLPEDVGR 200 (242)
T ss_dssp TCCC-HHHHHHHHHSEEEECCCCCGGGH----HHHHHHHHHHTTCCCCHHHHH
T ss_pred HHhh-hhhhhHhhcCceEEeCCCCHHHH----HHHHHHHHHHcCCCCCHHHHH
Confidence 355 8999999 7899999999999 889988888888776665543
No 37
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.78 E-value=3.1e-18 Score=138.85 Aligned_cols=163 Identities=21% Similarity=0.299 Sum_probs=111.9
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
..++|++.+++.+...+.... ..+++|+||||||||++|+++++.+.+.. ..++.+++..........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeecccccccccHH
Confidence 357899999988887776531 23799999999999999999999985432 246666665543332222
Q ss_pred HHHHHhHhhhhcCCCCC-----CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCC-
Q 025762 132 TKIKTFAAVAVGSGQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY- 194 (248)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~- 194 (248)
..+.... ...+... .......+++++|||++.+++..++.|+++++... .++.+|++||.
T Consensus 94 ~l~g~~~---~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~ 170 (311)
T 4fcw_A 94 RLIGAPP---GYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLG 170 (311)
T ss_dssp HHHCCCT---TSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTT
T ss_pred HhcCCCC---ccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccC
Confidence 2221000 0000000 00011234799999999999999999999999765 35558999997
Q ss_pred -------------------------CcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhh
Q 025762 195 -------------------------ISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 195 -------------------------~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
...+. +++.+|+. .+.|.|++.+++ ..++...+.+
T Consensus 171 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~R~~~~~~~~p~~~~~~----~~i~~~~l~~ 231 (311)
T 4fcw_A 171 SPLILEGLQKGWPYERIRDEVFKVLQQHFR-PEFLNRLDEIVVFRPLTKEQI----RQIVEIQMSY 231 (311)
T ss_dssp HHHHHTTTTSCCCSSTHHHHTHHHHHHHSC-HHHHTTCSEEEECCCCCHHHH----HHHHHHHTHH
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHhCC-HHHHhcCCeEEEeCCCCHHHH----HHHHHHHHHH
Confidence 44677 89999995 789999999999 6666655444
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=1e-18 Score=131.48 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=112.3
Q ss_pred ccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccceEEeccCC
Q 025762 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASD 123 (248)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~~~ 123 (248)
..+|.+++++..+++++|++..++.+..++......+++|+||||||||++|+++++.+.+... ....++.+++..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 4578889999999999999999999999998877789999999999999999999999743211 123444444332
Q ss_pred C----cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhcCCceEEEEE
Q 025762 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFI 191 (248)
Q Consensus 124 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------~~~~~L~~~l~~~~~~~~ii~~ 191 (248)
. .........+..+...... .....+|+|||+|.+.. ...+.|..+++.. ...+|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~ 157 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAK---------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGA 157 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHH---------STTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--SCCEEEE
T ss_pred HhccCCccccHHHHHHHHHHHHhh---------cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--CeEEEEe
Confidence 1 1111122222222111111 11236999999999852 2366677666553 4557888
Q ss_pred eCCCc-----ccChHHHHhhhheeeeccCCcccc
Q 025762 192 CNYIS-----RCTFSALFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 192 ~n~~~-----~~~~~~l~~r~~~i~~~~~~~~~~ 220 (248)
+|... .++ +++.+||..+.|.+|+.++.
T Consensus 158 ~~~~~~~~~~~~~-~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 158 TTLDEYRQYIEKD-AALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp ECHHHHHHHTTTC-HHHHTTEEEEECCCCCHHHH
T ss_pred CCHHHHHHHHhcC-HHHHHHhceeecCCCCHHHH
Confidence 88654 677 99999999999999999887
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.78 E-value=3.1e-18 Score=145.17 Aligned_cols=165 Identities=19% Similarity=0.109 Sum_probs=117.6
Q ss_pred hhccCCCccccccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEe
Q 025762 52 VEKYRPKQVKDVAHQEEVVRVLTNTLE------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (248)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~------------~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (248)
...+.+..|++++|++.+++.|...+. .....+++|+||||||||++|++++..+. ...++.+
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v 199 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSI 199 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEE
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEE
Confidence 445666789999999999999987762 12345799999999999999999999972 2345566
Q ss_pred ccCCCcch------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhc
Q 025762 120 NASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY 182 (248)
Q Consensus 120 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~ 182 (248)
++++.... ..++..+..... ...+||||||+|.+. ...++.|+..++..
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~ 265 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARE--------------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV 265 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHH--------------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCS
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHH--------------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCc
Confidence 66543221 112222221110 124799999999882 35677788777763
Q ss_pred ---CCceEEEEEeCCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhhcCcccc
Q 025762 183 ---SKVTRFFFICNYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLEGF 240 (248)
Q Consensus 183 ---~~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (248)
.....||.+||.+..++ +++++||. .+.++.|+.++. ..+++.++...+....
T Consensus 266 ~~~~~~v~vI~atn~~~~ld-~al~rRf~~~i~i~~P~~~~r----~~il~~~l~~~~~~l~ 322 (444)
T 2zan_A 266 GVDNDGILVLGATNIPWVLD-SAIRRRFEKRIYIPLPEAHAR----AAMFRLHLGSTQNSLT 322 (444)
T ss_dssp SCCCSSCEEEEEESCGGGSC-HHHHTTCCEEEECCCCCHHHH----HHHHHHHHTTSCEECC
T ss_pred ccCCCCEEEEecCCCccccC-HHHHhhcceEEEeCCcCHHHH----HHHHHHHHhcCCCCCC
Confidence 35567888999999999 99999996 788999998988 8888888777665433
No 40
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-17 Score=139.61 Aligned_cols=157 Identities=22% Similarity=0.224 Sum_probs=113.7
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
.-.|+++.|.+.+++.|.+.+.. ..+.++||+||||||||++|+++|.++ +..++.+++++
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~ 241 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSE 241 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecch
Confidence 35799999999999888776632 234579999999999999999999999 66777777765
Q ss_pred Ccc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhhcC
Q 025762 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYS 183 (248)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~~~ 183 (248)
..+ ...++..+..... . ...|+++||+|.+. ....+.|+..|+...
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~---~-----------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARE---N-----------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHH---T-----------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred hhccccchhHHHHHHHHHHHHH---c-----------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 432 2223333332211 1 13699999998651 235677888888654
Q ss_pred --CceEEEEEeCCCcccChHHHHh--hhh-eeeec-cCCccccchHHHHHHHHHHhhcCcc
Q 025762 184 --KVTRFFFICNYISRCTFSALFS--FLL-FFMFF-SLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 184 --~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
.+..+|++||.+..++ +++++ |+. .|.|+ .|+.++. ..+++.++.+..+.
T Consensus 308 ~~~~v~vI~aTN~~~~LD-~AllRpGRfd~~I~~p~lPd~~~R----~~Il~~~~~~~~l~ 363 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLD-PALLRPGRLDRKIEFPSLRDRRER----RLIFGTIASKMSLA 363 (428)
T ss_dssp SSCSEEEEEEESCSSSCC-HHHHSSSSEEEEEECCSSCCHHHH----HHHHHHHHHSSCBC
T ss_pred CCCCEEEEEecCChhhcC-hhhhcCCcceEEEEcCCCCCHHHH----HHHHHHHhcCCCCC
Confidence 3456889999999999 99997 787 58895 5777777 77777777665543
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.76 E-value=1.8e-18 Score=129.63 Aligned_cols=159 Identities=15% Similarity=0.149 Sum_probs=109.5
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~ 121 (248)
....+|.+++++..+++++|++..++.+...+......+++|+||||||||++|+++++.+..... ....++.+++
T Consensus 7 ~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 7 KYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred HHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 345678899999999999999999999999988877789999999999999999999999843211 1234444443
Q ss_pred CCCc----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhcCCceEE
Q 025762 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~---------~~~~~~L~~~l~~~~~~~~i 188 (248)
.... ........+.......... ....+|+|||++.+. .+..+.|...++. ....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~i 155 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDA---------EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRC 155 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHT---------TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhc---------CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeE
Confidence 2211 1111111122111111110 123699999999986 4566677777765 34558
Q ss_pred EEEeCCCc-----ccChHHHHhhhheeeeccCC
Q 025762 189 FFICNYIS-----RCTFSALFSFLLFFMFFSLL 216 (248)
Q Consensus 189 i~~~n~~~-----~~~~~~l~~r~~~i~~~~~~ 216 (248)
|+++|... .++ +++.+||..+.+.+|+
T Consensus 156 i~~~~~~~~~~~~~~~-~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKD-KALERRFQQILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTC-HHHHHHEEEEECCSCC
T ss_pred EEecCHHHHHHHHhcc-HHHHHhcCcccCCCCC
Confidence 88888654 577 9999999999888774
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=1.5e-18 Score=148.11 Aligned_cols=173 Identities=15% Similarity=0.126 Sum_probs=118.9
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~ 121 (248)
....+|.+++++..++.++|++..++.+...+......|++|+||||||||++|+++++.+.+... .+..++.+++
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 566789999999999999999999999999998888889999999999999999999999844221 2345555555
Q ss_pred CCC-cc--hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc--
Q 025762 122 SDD-RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-- 196 (248)
Q Consensus 122 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~-- 196 (248)
... .+ ...+...+..... ....+|||| ...+.++.|+..++.. ...+|.+||...
T Consensus 245 ~~~~~g~~e~~~~~~~~~~~~--------------~~~~iLfiD----~~~~a~~~L~~~L~~g--~v~vI~at~~~e~~ 304 (468)
T 3pxg_A 245 GTKYRGEFEDRLKKVMDEIRQ--------------AGNIILFID----AAIDASNILKPSLARG--ELQCIGATTLDEYR 304 (468)
T ss_dssp --------CTTHHHHHHHHHT--------------CCCCEEEEC----C--------CCCTTSS--SCEEEEECCTTTTH
T ss_pred CccccchHHHHHHHHHHHHHh--------------cCCeEEEEe----CchhHHHHHHHhhcCC--CEEEEecCCHHHHH
Confidence 411 00 0112222222211 123599999 4556777788888754 566888888764
Q ss_pred ---ccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhh----cCccccCce
Q 025762 197 ---RCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTL----KFLEGFGLS 243 (248)
Q Consensus 197 ---~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~ 243 (248)
.++ +++.+||..+.|.+|+.++. ..++..++.. .++...+..
T Consensus 305 ~~~~~~-~al~~Rf~~i~v~~p~~e~~----~~iL~~~~~~~~~~~~~~i~~~a 353 (468)
T 3pxg_A 305 KYIEKD-AALERRFQPIQVDQPSVDES----IQILQGLRDRYEAHHRVSITDDA 353 (468)
T ss_dssp HHHTTC-SHHHHSEEEEECCCCCHHHH----HHHHHHTTTTSGGGSSCSCCHHH
T ss_pred HHhhcC-HHHHHhCccceeCCCCHHHH----HHHHHHHHHHHHHhcCCCCCHHH
Confidence 577 99999999999999999999 8888777655 555554443
No 43
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.75 E-value=1.7e-17 Score=130.94 Aligned_cols=162 Identities=22% Similarity=0.132 Sum_probs=113.4
Q ss_pred hhhccCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEE
Q 025762 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (248)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (248)
|.+++.+..|++++|.+.+++.+...+.. ....+++|+||||||||++|++++..+ ..+++.
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~ 75 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFT 75 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH------TCCEEE
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCCEEE
Confidence 66777888999999999988877655432 124579999999999999999999998 335566
Q ss_pred eccCCCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHH
Q 025762 119 LNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRT 178 (248)
Q Consensus 119 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------------~~~~~L~~~ 178 (248)
+++.+... ...+...+.... . ....++++||+|.+.. ...+.++..
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~a~----~----------~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 141 (257)
T 1lv7_A 76 ISGSDFVEMFVGVGASRVRDMFEQAK----K----------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE 141 (257)
T ss_dssp ECSCSSTTSCCCCCHHHHHHHHHHHH----T----------TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH
T ss_pred EeHHHHHHHhhhhhHHHHHHHHHHHH----H----------cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHH
Confidence 66655321 122222222211 1 1136999999976632 355667777
Q ss_pred HhhcC--CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 179 METYS--KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 179 l~~~~--~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
++... ....+|.+||.+..++ +++.+ |+. .+.+.+|+.++. ..+++..+...++
T Consensus 142 l~~~~~~~~~~vI~~tn~~~~l~-~~l~r~~rf~~~i~i~~P~~~~r----~~il~~~~~~~~l 200 (257)
T 1lv7_A 142 MDGFEGNEGIIVIAATNRPDVLD-PALLRPGRFDRQVVVGLPDVRGR----EQILKVHMRRVPL 200 (257)
T ss_dssp HHTCCSSSCEEEEEEESCTTTSC-GGGGSTTSSCEEEECCCCCHHHH----HHHHHHHHTTSCB
T ss_pred hhCcccCCCEEEEEeeCCchhCC-HHHcCCCcCCeEEEeCCCCHHHH----HHHHHHHHhcCCC
Confidence 76543 4466888899998888 88887 776 588999998888 7777777765544
No 44
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=8e-18 Score=136.23 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=103.5
Q ss_pred ccccccHHHHHHHHHHHHc--------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 61 KDVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
+.++|++.+++.+..++.. ....+++|+||||||||++|+++++.+ ...++.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l------~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKVEATKFTE 88 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGGSS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEcchhccc
Confidence 3578999999988877754 245689999999999999999999998 34566666654321
Q ss_pred --------hHHHHHHHHHhHhhhhcCCCCCCCCCC-CCceEEEEeCCCCCCHHH------------HHHHHHHHhhc---
Q 025762 127 --------INVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEADSMTEDA------------QNALRRTMETY--- 182 (248)
Q Consensus 127 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vlilDEi~~l~~~~------------~~~L~~~l~~~--- 182 (248)
...+........ +.... ...++|+|||+|.++... ++.|+.+++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 89 VGYVGKEVDSIIRDLTDSAG----------GAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp CCSGGGSTTHHHHHHHHTTT----------TCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred CCccCccHHHHHHHHHHHhh----------HHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 111222221100 00000 114699999999997554 88899999864
Q ss_pred -------CCceEEEEEe----CCCcccChHHHHhhhh-eeeeccCCccccchHHHHHHH
Q 025762 183 -------SKVTRFFFIC----NYISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 183 -------~~~~~ii~~~----n~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~ 229 (248)
.....+|+++ +.+..+. +++.+||. .+.|++|+.+++ ..+++
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~l~~R~~~~i~~~~~~~~~~----~~il~ 212 (310)
T 1ofh_A 159 TKHGMVKTDHILFIASGAFQVARPSDLI-PELQGRLPIRVELTALSAADF----ERILT 212 (310)
T ss_dssp ETTEEEECTTCEEEEEECCSSSCGGGSC-HHHHHTCCEEEECCCCCHHHH----HHHHH
T ss_pred cccccccCCcEEEEEcCCcccCCcccCC-HHHHhhCCceEEcCCcCHHHH----HHHHH
Confidence 2345677774 4567788 99999997 599999999998 66665
No 45
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.75 E-value=7.5e-18 Score=133.60 Aligned_cols=175 Identities=15% Similarity=0.043 Sum_probs=106.3
Q ss_pred ccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
.|++++|++..+..+...+.. ....+++|+||||||||++|+++++.+... ..+++.++++..............
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~g~ 80 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALNENLLDSELFGH 80 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT---TSCEEEEEGGGSCHHHHHHHHHCC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc---CCCeEEEecCCCChhHHHHHhcCC
Confidence 677889998888777655543 345689999999999999999999986322 346777887765322111111110
Q ss_pred hHhhhhcC-CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEEeCCC-------cc
Q 025762 137 FAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI-------SR 197 (248)
Q Consensus 137 ~~~~~~~~-~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~-----------~~~~~ii~~~n~~-------~~ 197 (248)
......+. ....+....+..++|+|||++.++.+.++.|+.+++.. ....++|++||.. ..
T Consensus 81 ~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp C---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTS
T ss_pred cccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCC
Confidence 00000000 00111111234579999999999999999999999874 2456799999874 24
Q ss_pred cChHHHHhhhh--eeeeccCCc--cccchHHHHHHHHHHhhcCc
Q 025762 198 CTFSALFSFLL--FFMFFSLLD--QISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 198 ~~~~~l~~r~~--~i~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 237 (248)
+. +++.+|+. .+.++|+.. +++...+..++...+...+.
T Consensus 161 ~~-~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~ 203 (265)
T 2bjv_A 161 FR-ADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKL 203 (265)
T ss_dssp SC-HHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cc-HHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 66 89999986 467777766 45533333344555555554
No 46
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=4.1e-18 Score=147.68 Aligned_cols=162 Identities=18% Similarity=0.210 Sum_probs=102.0
Q ss_pred cccccccHHHHHHHHHHHHc------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHH
Q 025762 60 VKDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (248)
.++++|.+.+.+.+...+.. ..+.+++|+||||||||++|++++..+ ...+..+++........+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------GRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------TCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEecccchhhhhhhH
Confidence 34688999988877655432 246689999999999999999999998 445555655543221111100
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhcC---------------CceEEEEEeCC
Q 025762 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETYS---------------KVTRFFFICNY 194 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~----~~~~L~~~l~~~~---------------~~~~ii~~~n~ 194 (248)
...+...................++++|||+|.++.+ .++.|+++++... ....+|+++|.
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~ 233 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN 233 (543)
T ss_dssp ----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS
T ss_pred HHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc
Confidence 0000000000000000001113469999999999877 4588888887543 34678999999
Q ss_pred CcccChHHHHhhhheeeeccCCccccchHHHHHHHHHH
Q 025762 195 ISRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYAS 232 (248)
Q Consensus 195 ~~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~ 232 (248)
...++ +++++||.++.|.+|+.++. ..++..++
T Consensus 234 ~~~l~-~aL~~R~~vi~~~~~~~~e~----~~Il~~~l 266 (543)
T 3m6a_A 234 LATIP-GPLRDRMEIINIAGYTEIEK----LEIVKDHL 266 (543)
T ss_dssp TTTSC-HHHHHHEEEEECCCCCHHHH----HHHHHHTH
T ss_pred cccCC-HHHHhhcceeeeCCCCHHHH----HHHHHHHH
Confidence 99999 99999999999999999999 67666654
No 47
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=1.7e-16 Score=132.40 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=121.9
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHc----CCCC--eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEe
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (248)
....+|..++.| +.++|++..++.+..++.. ..+. +++|+||+|+|||++++++++.+.... ...++.+
T Consensus 5 ~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i 79 (389)
T 1fnn_A 5 VDDSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYI 79 (389)
T ss_dssp SCGGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEE
T ss_pred cCHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEE
Confidence 445567777766 5679999998888877765 3444 899999999999999999999984432 2356677
Q ss_pred ccCCCcch-HHHHHHHHHhHhhhhcCCCCCC---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC----Cc
Q 025762 120 NASDDRGI-NVVRTKIKTFAAVAVGSGQRRG---------GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----KV 185 (248)
Q Consensus 120 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~----~~ 185 (248)
++...... ..+......+.......+.... ........+|+|||++.++...++.|+.+++... ..
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 80 NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp ETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC
T ss_pred eCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC
Confidence 76554332 2222222221100000000000 0001234699999999999999999999997654 36
Q ss_pred eEEEEEeCCC---cccChHHHHhhhh--eeeeccCCccccchHHHHHHHHHHhh
Q 025762 186 TRFFFICNYI---SRCTFSALFSFLL--FFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 186 ~~ii~~~n~~---~~~~~~~l~~r~~--~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
..+|++||.. ..+. +.+.+|+. .+.|+|++.+++ ..++...+..
T Consensus 160 ~~iI~~~~~~~~~~~l~-~~~~~r~~~~~i~~~pl~~~~~----~~~l~~~~~~ 208 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLD-PSTRGIMGKYVIRFSPYTKDQI----FDILLDRAKA 208 (389)
T ss_dssp EEEEEEESSTHHHHTSC-HHHHHHHTTCEEECCCCBHHHH----HHHHHHHHHH
T ss_pred EEEEEEECCchHHHHhC-HHhhhcCCCceEEeCCCCHHHH----HHHHHHHHHh
Confidence 7788888876 6677 88999987 599999999999 7777776654
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.73 E-value=4.9e-17 Score=135.40 Aligned_cols=181 Identities=19% Similarity=0.148 Sum_probs=117.4
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHc----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC---ccccceEE
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLE 118 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~---~~~~~~~~ 118 (248)
....+|...+.| +.++|++..++.+..++.. ..+.+++|+||||||||++++++++.+.... .....++.
T Consensus 7 ~~~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
T 2v1u_A 7 RKRWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIY 83 (387)
T ss_dssp SCHHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hCHHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 344455566655 6679999999999888743 4566899999999999999999999873210 11346677
Q ss_pred eccCCCcchHH-HHHHHHHhHhhhhcCCCC---------CCCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhc----
Q 025762 119 LNASDDRGINV-VRTKIKTFAAVAVGSGQR---------RGGYPCPPYKIIILDEADSMTED--AQNALRRTMETY---- 182 (248)
Q Consensus 119 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~vlilDEi~~l~~~--~~~~L~~~l~~~---- 182 (248)
+++........ +......+.......+.. .......+..+|+|||+|.+... .++.|..+++..
T Consensus 84 i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 84 VNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG 163 (387)
T ss_dssp EETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-
T ss_pred EECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC
Confidence 77765433221 222111110000000000 00001223569999999999766 677777777644
Q ss_pred -CCceEEEEEeCCC---cccChHHHHhhh--heeeeccCCccccchHHHHHHHHHHhh
Q 025762 183 -SKVTRFFFICNYI---SRCTFSALFSFL--LFFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 183 -~~~~~ii~~~n~~---~~~~~~~l~~r~--~~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
.....+|++||.. ..+. +.+.+|+ ..+.|+|++.+++ ..++...+..
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~-~~l~~r~~~~~i~l~~l~~~~~----~~il~~~~~~ 216 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLE-PRVKSSLGEVELVFPPYTAPQL----RDILETRAEE 216 (387)
T ss_dssp ----CEEEEECSCSTTSSSSC-HHHHTTTTSEECCBCCCCHHHH----HHHHHHHHHH
T ss_pred CCceEEEEEEECCCchHhhhC-HHHHhcCCCeEEeeCCCCHHHH----HHHHHHHHHh
Confidence 4456788888876 6677 9999998 5799999999999 8888777654
No 49
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.72 E-value=8.2e-17 Score=137.46 Aligned_cols=163 Identities=17% Similarity=0.112 Sum_probs=116.8
Q ss_pred cCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
..+..|++++|.+.+++.|.+++.. ....+++|+||||||||++|++++..+ ...++.+++
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn~ 271 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLING 271 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEEH
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEEc
Confidence 3456788999999999988877653 345679999999999999999999997 456777776
Q ss_pred CCCcch--HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcC--Cce
Q 025762 122 SDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--KVT 186 (248)
Q Consensus 122 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~--~~~ 186 (248)
.+.... ................ ...++|||||+|.+. ...++.|+..|+... ...
T Consensus 272 ~~l~~~~~g~~~~~~~~~f~~A~~----------~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 272 PEIMSKLAGESESNLRKAFEEAEK----------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHH----------TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred hHhhhhhcchhHHHHHHHHHHHHh----------cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 543211 1111111111111111 113699999996653 367888999998654 356
Q ss_pred EEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 187 RFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 187 ~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
.+|.+||.+..++ +++++ ||. .+.|.+|+.++. .++++..+....+.
T Consensus 342 ~vIaaTn~~~~Ld-~al~r~gRf~~~i~i~~P~~~eR----~~IL~~~~~~~~l~ 391 (489)
T 3hu3_A 342 IVMAATNRPNSID-PALRRFGRFDREVDIGIPDATGR----LEILQIHTKNMKLA 391 (489)
T ss_dssp EEEEEESCGGGBC-GGGGSTTSSCEEEECCCCCHHHH----HHHHHHHTTTSCBC
T ss_pred EEEEecCCccccC-HHHhCCCcCceEEEeCCCCHHHH----HHHHHHHHhcCCCc
Confidence 6888999999999 99998 665 599999999999 88888877665544
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.72 E-value=9.7e-18 Score=138.07 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=101.5
Q ss_pred cCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCC-----Cccc----------------
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-----ELYK---------------- 113 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~-----~~~~---------------- 113 (248)
.++..|++++|++.+++.+..........+++|+||||||||++|+++++.+... ....
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLST 97 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCC
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcc
Confidence 3557899999999988776666554455579999999999999999999987320 0000
Q ss_pred ------cceEEeccCCCcchHHHHHH---HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-
Q 025762 114 ------SRVLELNASDDRGINVVRTK---IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS- 183 (248)
Q Consensus 114 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~- 183 (248)
..++..... .....+... ...+.. .......+....+..++|||||++.++.+.++.|+.+++...
T Consensus 98 ~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~--~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~ 173 (350)
T 1g8p_A 98 NVIRKPTPVVDLPLG--VSEDRVVGALDIERAISK--GEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGEN 173 (350)
T ss_dssp CEEEECCCEEEECTT--CCHHHHHCEECHHHHHHH--CGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEE
T ss_pred ccccCCCcccccCCC--cchhhheeechhhhhhcC--CceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCce
Confidence 011111110 001111000 000000 000001111112235799999999999999999999999742
Q ss_pred ------------CceEEEEEeCCCc-ccChHHHHhhhhe-eeeccCCcccc
Q 025762 184 ------------KVTRFFFICNYIS-RCTFSALFSFLLF-FMFFSLLDQIS 220 (248)
Q Consensus 184 ------------~~~~ii~~~n~~~-~~~~~~l~~r~~~-i~~~~~~~~~~ 220 (248)
....+|.++|+.. .+. +++++||.. +.+.+++..+.
T Consensus 174 ~~~~~g~~~~~~~~~~li~~~n~~~~~l~-~~L~~R~~~~~~l~~~~~~~~ 223 (350)
T 1g8p_A 174 VVERDGLSIRHPARFVLVGSGNPEEGDLR-PQLLDRFGLSVEVLSPRDVET 223 (350)
T ss_dssp EECCTTCCEEEECCEEEEEEECSCSCCCC-HHHHTTCSEEEECCCCCSHHH
T ss_pred EEEecceEEeeCCceEEEEEeCCCCCCCC-HHHHhhcceEEEcCCCCcHHH
Confidence 2556778888644 788 999999986 99999965543
No 51
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.72 E-value=5.6e-17 Score=116.87 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=92.6
Q ss_pred cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHh
Q 025762 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (248)
+++|+...++.+...+.. ....+++|+||||||||++|+++++..... ..+++ +++............+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~---~~~~v-~~~~~~~~~~~~~~~~~~--- 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA---QGEFV-YRELTPDNAPQLNDFIAL--- 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT---TSCCE-EEECCTTTSSCHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc---CCCEE-EECCCCCcchhhhcHHHH---
Confidence 467888888877776643 455689999999999999999999875322 22455 666554322111111111
Q ss_pred hhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCC-------cccChHHHHhhhh--ee
Q 025762 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI-------SRCTFSALFSFLL--FF 210 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~-------~~~~~~~l~~r~~--~i 210 (248)
+..++|+|||+|.++++.+..|+.+++..+...++|++||.. ..+. +.+..|+. .+
T Consensus 75 --------------a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~-~~L~~rl~~~~i 139 (145)
T 3n70_A 75 --------------AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHII-AELYYCFAMTQI 139 (145)
T ss_dssp --------------HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCC-HHHHHHHHHHEE
T ss_pred --------------cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCC-HHHHHHhcCCEE
Confidence 013589999999999999999999998888888899999853 3456 78888866 45
Q ss_pred eeccC
Q 025762 211 MFFSL 215 (248)
Q Consensus 211 ~~~~~ 215 (248)
.++|+
T Consensus 140 ~lPpL 144 (145)
T 3n70_A 140 ACLPL 144 (145)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 56554
No 52
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.71 E-value=6.7e-17 Score=131.81 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=110.2
Q ss_pred Ccccccc-c--cHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHH
Q 025762 58 KQVKDVA-H--QEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (248)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (248)
..|++++ | +......+..++... ...+++|+||||||||++++++++.+... ...++.+++.+... .+..
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~--~~~~ 82 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQ--AMVE 82 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHH--HHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHH--HHHH
Confidence 3566666 4 445555666666554 34689999999999999999999987432 23455555543211 1111
Q ss_pred HHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhcC-CceEEEEEeCCC-c---ccChHHHHh
Q 025762 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI-S---RCTFSALFS 205 (248)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--~~~~~L~~~l~~~~-~~~~ii~~~n~~-~---~~~~~~l~~ 205 (248)
............. ..+.++|+|||++.++. ..++.++.+++... ....+|++++.. . .+. +++.+
T Consensus 83 ~~~~~~~~~~~~~-------~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~-~~L~s 154 (324)
T 1l8q_A 83 HLKKGTINEFRNM-------YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS-DRLVS 154 (324)
T ss_dssp HHHHTCHHHHHHH-------HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC-HHHHH
T ss_pred HHHcCcHHHHHHH-------hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh-hHhhh
Confidence 1100000000000 01136999999999975 67778888876543 334566666543 3 577 99999
Q ss_pred hh---heeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 206 FL---LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 206 r~---~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
|+ ..+.|+| +.++. ..++...+...++..+++.+.+
T Consensus 155 R~~~~~~i~l~~-~~~e~----~~il~~~~~~~~~~l~~~~l~~ 193 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTR----FKIIKEKLKEFNLELRKEVIDY 193 (324)
T ss_dssp HHHTSEEEECCC-CHHHH----HHHHHHHHHHTTCCCCHHHHHH
T ss_pred cccCceEEEeCC-CHHHH----HHHHHHHHHhcCCCCCHHHHHH
Confidence 99 5799999 99999 8999998888888777665543
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.70 E-value=3.6e-16 Score=132.54 Aligned_cols=157 Identities=22% Similarity=0.165 Sum_probs=110.5
Q ss_pred CCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (248)
...|+++.|.+++++.+.+.+.. ..+.+++|+||||||||++|++++..+ ..+++.+++++.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~~ 85 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSDF 85 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHHH
Confidence 45789999999988877665432 123579999999999999999999998 445666666554
Q ss_pred cc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhcC-
Q 025762 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (248)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------------~~~~~L~~~l~~~~- 183 (248)
.. ....+..+... ... ..++|||||+|.+.. ..++.|+..|+...
T Consensus 86 ~~~~~g~~~~~~r~lf~~A---~~~-----------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQA---KAH-----------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHH---HHT-----------CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred HHHHhcccHHHHHHHHHHH---Hhc-----------CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 21 11122222211 111 136999999998742 35667777776432
Q ss_pred -CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 184 -KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 184 -~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
....+|.+||.+..++ +++++ ||. .+.+.+|+.++. .++++..+....+.
T Consensus 152 ~~~viVIaaTn~~~~Ld-~allR~gRFd~~i~i~~Pd~~~R----~~Il~~~~~~~~l~ 205 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILD-PALLRPGRFDKKIVVDPPDMLGR----KKILEIHTRNKPLA 205 (476)
T ss_dssp GGTEEEEEEESCGGGSC-GGGGSTTSSCEEEECCCCCHHHH----HHHHHHHHTTSCBC
T ss_pred CCCEEEEEecCChhhhc-hhhcccCcceeEeecCCCCHHHH----HHHHHHHHHhCCCc
Confidence 4567888899998888 88886 777 689999999888 77887777665543
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.70 E-value=8.4e-17 Score=145.06 Aligned_cols=152 Identities=21% Similarity=0.316 Sum_probs=107.3
Q ss_pred ccccccHHHHHHHHHHHHcCC-------C--CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHH
Q 025762 61 KDVAHQEEVVRVLTNTLETAN-------C--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
..++|++.+++.+...+.... . .+++|+||||||||++|+++++.+... ...++.++++.........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccccc
Confidence 467899999988887776421 1 169999999999999999999998433 3467777776543211100
Q ss_pred -HHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCCcc--
Q 025762 132 -TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYISR-- 197 (248)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~~~-- 197 (248)
..+..... ..++++|+|||++.++++.++.|+++++++. .++++|++||....
T Consensus 568 ~~~l~~~~~-------------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 568 GGQLTEKVR-------------RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp ---CHHHHH-------------HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred cchhhHHHH-------------hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence 00111100 1124699999999999999999999999843 45689999995433
Q ss_pred ----------cChHHHHhhh-heeeeccCCccccchHHHHHHHHHHh
Q 025762 198 ----------CTFSALFSFL-LFFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 198 ----------~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
+. +++++|+ .++.|.|++.+++ ..++...+.
T Consensus 635 ~~~~~~~~~~f~-p~l~~Rl~~~i~~~~l~~~~~----~~i~~~~l~ 676 (758)
T 3pxi_A 635 DKVMGELKRAFR-PEFINRIDEIIVFHSLEKKHL----TEIVSLMSD 676 (758)
T ss_dssp HHHHHHHHHHSC-HHHHTTSSEEEECC--CHHHH----HHHHHHHHH
T ss_pred HHHHHHHHhhCC-HHHHhhCCeEEecCCCCHHHH----HHHHHHHHH
Confidence 67 9999999 5899999999999 555555443
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=9.6e-17 Score=144.80 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=107.2
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch----
Q 025762 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI---- 127 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~---- 127 (248)
..++|++.+++.+..++.... ..+++|+||||||||++|+++++.+ ...++.++++.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSCCS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEEechhhcchhhHh
Confidence 357899999988877765321 1269999999999999999999998 345666666543211
Q ss_pred --------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEE
Q 025762 128 --------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRF 188 (248)
Q Consensus 128 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~i 188 (248)
.........+.... ..++++||+|||+++++++.++.|+++|+++. .++.+
T Consensus 532 ~l~g~~~g~~g~~~~~~l~~~~----------~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~i 601 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQGGLLTDAV----------IKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_dssp SSCCCCSCSHHHHHTTHHHHHH----------HHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEE
T ss_pred hhcCCCCCCcCccccchHHHHH----------HhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEE
Confidence 00000000000000 01235799999999999999999999999753 35668
Q ss_pred EEEeCCCc-------------------------ccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHh
Q 025762 189 FFICNYIS-------------------------RCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 189 i~~~n~~~-------------------------~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
|++||... .+. +++++|+. ++.|+|++.+++ ..++...+.
T Consensus 602 I~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~~R~~~~i~~~~l~~~~~----~~i~~~~l~ 667 (758)
T 1r6b_X 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT-PEFRNRLDNIIWFDHLSTDVI----HQVVDKFIV 667 (758)
T ss_dssp EEEECSSCC-----------------CHHHHHHHSC-HHHHTTCSEEEECCCCCHHHH----HHHHHHHHH
T ss_pred EEecCcchhhhhhcccCccccchHHHHHHHHHHhcC-HHHHhhCCcceeeCCCCHHHH----HHHHHHHHH
Confidence 99998643 567 89999994 799999999999 666666554
No 56
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.70 E-value=1e-16 Score=135.69 Aligned_cols=174 Identities=12% Similarity=0.064 Sum_probs=112.2
Q ss_pred cccccc-cc--HHHHHHHHHHHHcCC-CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHH
Q 025762 59 QVKDVA-HQ--EEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (248)
Q Consensus 59 ~~~~~~-g~--~~~~~~l~~~l~~~~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (248)
.|++++ |+ ......+........ ..+++|+||||+|||++|+++++.+... .....++.+++.... ..+...+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~~--~~~~~~~ 179 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFL--NDLVDSM 179 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHHH--HHHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHH--HHHHHHH
Confidence 677777 53 334445555554443 5689999999999999999999987322 112344555544321 1111111
Q ss_pred HHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEEeCCC-cc---cChHHHHhhh
Q 025762 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI-SR---CTFSALFSFL 207 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--~~~~~L~~~l~~~~~-~~~ii~~~n~~-~~---~~~~~l~~r~ 207 (248)
........... .....++|+|||++.+.. ..++.|+..++.... ...+|++|+.+ .. +. +++.+||
T Consensus 180 ~~~~~~~~~~~------~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~-~~L~sR~ 252 (440)
T 2z4s_A 180 KEGKLNEFREK------YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ-DRLVSRF 252 (440)
T ss_dssp HTTCHHHHHHH------HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC-HHHHHHH
T ss_pred HcccHHHHHHH------hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH-HHHHhhc
Confidence 10000000000 001246999999999975 678888888876543 35577777653 33 67 9999999
Q ss_pred ---heeeeccCCccccchHHHHHHHHHHhhcCccccCceeee
Q 025762 208 ---LFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 208 ---~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 246 (248)
..+.+.+|+.++. ..++...+...++..+++.+.|
T Consensus 253 ~~g~~i~l~~p~~e~r----~~iL~~~~~~~~~~i~~e~l~~ 290 (440)
T 2z4s_A 253 QMGLVAKLEPPDEETR----KSIARKMLEIEHGELPEEVLNF 290 (440)
T ss_dssp HSSBCCBCCCCCHHHH----HHHHHHHHHHHTCCCCTTHHHH
T ss_pred cCCeEEEeCCCCHHHH----HHHHHHHHHHcCCCCCHHHHHH
Confidence 4799999999999 9999999888888877765543
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.69 E-value=2.4e-16 Score=127.20 Aligned_cols=169 Identities=16% Similarity=0.097 Sum_probs=106.6
Q ss_pred cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHh
Q 025762 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (248)
+++|+...++.+...+.. ....+++|+||||||||++|++++...... ..+++.+++...... .+...+.....
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~---~~~~v~v~~~~~~~~-l~~~~lfg~~~ 78 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCAALNES-LLESELFGHEK 78 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS---SSCCCEEECSSCCHH-HHHHHHTCCCS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc---CCCeEEEeCCCCChH-HHHHHhcCccc
Confidence 468888888777666644 345689999999999999999999976322 346777888765332 11111100000
Q ss_pred hhhcCC---CCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------ccc
Q 025762 140 VAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRC 198 (248)
Q Consensus 140 ~~~~~~---~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~~ 198 (248)
. ...+ ...+....+..++|||||++.++...+..|+.++++.. ...++|++||.. ..+
T Consensus 79 g-~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~f 157 (304)
T 1ojl_A 79 G-AFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRF 157 (304)
T ss_dssp S-CCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSS
T ss_pred c-ccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCc
Confidence 0 0000 01111112345799999999999999999999999763 356799999864 245
Q ss_pred ChHHHHhhhhe--eeeccCC--ccccchHHHHHHHHHHhhcC
Q 025762 199 TFSALFSFLLF--FMFFSLL--DQISFDKEYIRIIYASTLKF 236 (248)
Q Consensus 199 ~~~~l~~r~~~--i~~~~~~--~~~~~~~~~~~l~~~~~~~~ 236 (248)
. +.|.+|+.. +.++|+. .+++...+...+...+...+
T Consensus 158 r-~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~ 198 (304)
T 1ojl_A 158 R-QDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNR 198 (304)
T ss_dssp C-HHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTT
T ss_pred H-HHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhc
Confidence 6 789999864 5677776 45662222333333443333
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=4.9e-17 Score=148.19 Aligned_cols=185 Identities=14% Similarity=0.059 Sum_probs=115.7
Q ss_pred CccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC----ccccceEEeccC
Q 025762 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNAS 122 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~~ 122 (248)
...+|.+++++..++.++|++..++.+...+......+++|+||||||||++|+++++.+.... ..+..++.++++
T Consensus 156 ~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 156 YGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp HEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred HHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 3457889999999999999999999999999888888999999999999999999999873321 124466666665
Q ss_pred CCcchH----HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhhcCCceEEEE
Q 025762 123 DDRGIN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFF 190 (248)
Q Consensus 123 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------~~~~~~L~~~l~~~~~~~~ii~ 190 (248)
...... .....+......... .....||||||+|.+. .+..+.|..+++.. ...+|.
T Consensus 236 ~l~~g~~~~g~~~~~l~~~~~~~~~---------~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~ 304 (854)
T 1qvr_A 236 SLLAGAKYRGEFEERLKAVIQEVVQ---------SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIG 304 (854)
T ss_dssp ----------CHHHHHHHHHHHHHT---------TCSSEEEEECCC-------------------HHHHHTT--CCCEEE
T ss_pred HhhccCccchHHHHHHHHHHHHHHh---------cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEE
Confidence 542111 111112222111111 0123699999999986 44566777777654 345777
Q ss_pred EeCCCc----ccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhhcCccccCce
Q 025762 191 ICNYIS----RCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTLKFLEGFGLS 243 (248)
Q Consensus 191 ~~n~~~----~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (248)
+||... .++ +++.+||..+.|.+|+.++..+++..++.......++...+..
T Consensus 305 at~~~~~~~~~~d-~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~a 360 (854)
T 1qvr_A 305 ATTLDEYREIEKD-PALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSA 360 (854)
T ss_dssp EECHHHHHHHTTC-TTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHH
T ss_pred ecCchHHhhhccC-HHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHH
Confidence 887543 467 8999999999999999999933333333333334455554443
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.2e-16 Score=128.58 Aligned_cols=165 Identities=7% Similarity=-0.028 Sum_probs=104.2
Q ss_pred ccccHHHHHHHH----HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCC----ccccceEEeccCCCcchH-HHHHH
Q 025762 63 VAHQEEVVRVLT----NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDDRGIN-VVRTK 133 (248)
Q Consensus 63 ~~g~~~~~~~l~----~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~ 133 (248)
+.|++.....+. .++..+.+.+++|+||||||||++++.+++++.... .....++.+++....... .+..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 567777776555 445567888999999999999999999999984221 123467888887654332 22222
Q ss_pred HHHhHhhhhcCCCC---------CCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---cCCceEEEEEeCCCcc----
Q 025762 134 IKTFAAVAVGSGQR---------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET---YSKVTRFFFICNYISR---- 197 (248)
Q Consensus 134 ~~~~~~~~~~~~~~---------~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~---~~~~~~ii~~~n~~~~---- 197 (248)
...+.......+.. ..........|++|||+|.+. .++.|+.+++. ......+|+++|....
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 22221110000000 000012335699999999997 56777777763 2335567888886532
Q ss_pred cChHHHHhhhh--eeeeccCCccccchHHHHHHHHHHhh
Q 025762 198 CTFSALFSFLL--FFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 198 ~~~~~l~~r~~--~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
+. +++.||+. .|.|.||+.+|+ ..+++..+..
T Consensus 180 L~-~~v~SR~~~~~i~F~pYt~~el----~~Il~~Rl~~ 213 (318)
T 3te6_A 180 IN-IMPSLKAHFTEIKLNKVDKNEL----QQMIITRLKS 213 (318)
T ss_dssp HH-TCHHHHTTEEEEECCCCCHHHH----HHHHHHHHHH
T ss_pred cc-hhhhccCCceEEEeCCCCHHHH----HHHHHHHHHh
Confidence 34 66788984 699999999999 6666655544
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=5.8e-17 Score=146.10 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=113.9
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~ 121 (248)
....+|.+++++..++.++|++..++.+...+......|++|+||||||||++|+++++.+.+... ....++.+++
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 556789999999999999999999999999998888889999999999999999999999743221 2334444444
Q ss_pred CCC-c--chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc--
Q 025762 122 SDD-R--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-- 196 (248)
Q Consensus 122 ~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~-- 196 (248)
... . ....+...+..... ....+|||| ...+.++.|+..++. ....+|.+||...
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~--------------~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQ--------------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYR 304 (758)
T ss_dssp --------CTTHHHHHHHHHT--------------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTH
T ss_pred cccccchHHHHHHHHHHHHHh--------------cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHH
Confidence 110 0 01122233322211 123699999 445677778888874 3567888888766
Q ss_pred ---ccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhh
Q 025762 197 ---RCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 197 ---~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
.++ +++.+||..+.|.+|+.++. ..+++.++..
T Consensus 305 ~~~~~d-~al~rRf~~i~v~~p~~~~~----~~il~~~~~~ 340 (758)
T 3pxi_A 305 KYIEKD-AALERRFQPIQVDQPSVDES----IQILQGLRDR 340 (758)
T ss_dssp HHHTTC-SHHHHSEEEEECCCCCHHHH----HHHHHHTTTT
T ss_pred HHhhcc-HHHHhhCcEEEeCCCCHHHH----HHHHHHHHHH
Confidence 678 99999999999999999999 8888766554
No 61
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=1.5e-16 Score=132.42 Aligned_cols=151 Identities=19% Similarity=0.173 Sum_probs=97.0
Q ss_pred cccccHHHHHHHHHHHH------------------------------cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 025762 62 DVAHQEEVVRVLTNTLE------------------------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~------------------------------~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~ 111 (248)
.++|++.+++.|..++. .....+++|+||||||||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 46899999988877762 0134579999999999999999999998
Q ss_pred cccceEEeccCCCcchH----HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH--------------HHH
Q 025762 112 YKSRVLELNASDDRGIN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQN 173 (248)
Q Consensus 112 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~--------------~~~ 173 (248)
...++.+++....... .....+........ +....+..++++|||++.++.. .++
T Consensus 97 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~ 169 (376)
T 1um8_A 97 -DIPIAISDATSLTEAGYVGEDVENILTRLLQASD------WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQ 169 (376)
T ss_dssp -TCCEEEEEGGGCC--------CTHHHHHHHHHTT------TCHHHHTTSEEEEETGGGC--------------CHHHHH
T ss_pred -CCCEEEecchhhhhcCcCCccHHHHHHHHHhhcc------chhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHH
Confidence 3455666655432111 01111111111000 0001123469999999999887 999
Q ss_pred HHHHHHhhcC---------------------CceEEEEEeCC--------------------------------------
Q 025762 174 ALRRTMETYS---------------------KVTRFFFICNY-------------------------------------- 194 (248)
Q Consensus 174 ~L~~~l~~~~---------------------~~~~ii~~~n~-------------------------------------- 194 (248)
.|+.+|+... .+..+|+++|.
T Consensus 170 ~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (376)
T 1um8_A 170 ALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTH 249 (376)
T ss_dssp HHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHH
T ss_pred HHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHH
Confidence 9999999642 23356666652
Q ss_pred ---CcccChHHHHhhh-heeeeccCCccccchHHHHHHH
Q 025762 195 ---ISRCTFSALFSFL-LFFMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 195 ---~~~~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~ 229 (248)
...+. +++.+|+ .++.|+|++.+++ ..++.
T Consensus 250 ~l~~~~~~-p~l~~R~~~~i~~~~l~~~~l----~~i~~ 283 (376)
T 1um8_A 250 DLVTYGLI-PELIGRLPVLSTLDSISLEAM----VDILQ 283 (376)
T ss_dssp HHHHTTCC-HHHHTTCCEEEECCCCCHHHH----HHHHH
T ss_pred HHhhcCCC-hHHhcCCCceeeccCCCHHHH----HHHHh
Confidence 11356 8999999 4799999999999 66554
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.67 E-value=9.4e-18 Score=133.23 Aligned_cols=158 Identities=21% Similarity=0.139 Sum_probs=104.7
Q ss_pred cCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
..+..|++++|++.+++.+...+.. ....+++|+||||||||++|++++..+.. +++.+++.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~------~~~~v~~~ 78 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV------PFFSMGGS 78 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC------CCCCCCSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEechH
Confidence 3456788999998888777766541 22446999999999999999999999832 33334443
Q ss_pred CCcch------HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH---------------HHHHHHHHHhh
Q 025762 123 DDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---------------AQNALRRTMET 181 (248)
Q Consensus 123 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~---------------~~~~L~~~l~~ 181 (248)
+.... ..+...+.... ....++|+|||+|.+... .++.|+..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~--------------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAK--------------KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHH--------------HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred HHHHhhcchHHHHHHHHHHHHH--------------hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 32110 00000111100 012369999999998643 24456666655
Q ss_pred cC---CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 182 YS---KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 182 ~~---~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
.. ....+|++||.+..++ +++.+ |+. .+.|.+|+.++. ..+++..+....+
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld-~~l~r~~Rf~~~i~i~~p~~~~r----~~il~~~~~~~~~ 201 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILD-PALMRPGRFDRQVLVDKPDFNGR----VEILKVHIKGVKL 201 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSC-GGGGSSSSSCCCCBCCCCCTTTH----HHHHHHHTSSSCC
T ss_pred cccCCCCEEEEEecCCchhcC-HhHcCCCCCCeEEEecCcCHHHH----HHHHHHHHhcCCC
Confidence 43 2356788889888888 88988 665 699999999999 8888877765443
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=1.6e-16 Score=143.33 Aligned_cols=180 Identities=13% Similarity=0.058 Sum_probs=120.9
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCc----cccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~~~~~~~ 121 (248)
....+|.+++++..++.++|++..++.+.+.+......+++|+||||||||++|++++..+.+... ....++.++.
T Consensus 171 ~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp SSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred HHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 567789999999999999999999999999998888889999999999999999999998743221 1223444443
Q ss_pred CCCc----chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhcCCceEE
Q 025762 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRF 188 (248)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l---------~~~~~~~L~~~l~~~~~~~~i 188 (248)
.... ........+......... ....+|||||+|.+ ..+..+.|..+++. ....+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~----------~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~ 318 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQ----------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRV 318 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSS----------SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEE
T ss_pred HHHhccccccchHHHHHHHHHHHHHh----------cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEE
Confidence 3221 111112222222211111 12479999999998 23445555555554 34567
Q ss_pred EEEeCCC-----cccChHHHHhhhheeeeccCCccccchHHHHHHHHHHhh----cCccccCc
Q 025762 189 FFICNYI-----SRCTFSALFSFLLFFMFFSLLDQISFDKEYIRIIYASTL----KFLEGFGL 242 (248)
Q Consensus 189 i~~~n~~-----~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 242 (248)
|.+||.. ...+ +++.+||..+.|.+|+.++. ..++..++.. .++...+.
T Consensus 319 I~at~~~~~~~~~~~d-~aL~~Rf~~i~v~~p~~~e~----~~il~~l~~~~~~~~~v~~~~~ 376 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKD-RALARRFQKIDITEPSIEET----VQIINGLKPKYEAHHDVRYTAK 376 (758)
T ss_dssp EEEECHHHHHCCCCCT-TSSGGGEEEEECCCCCHHHH----HHHHHHHHHHHHHHHTCCCCHH
T ss_pred EEEeCchHHhhhhhcC-HHHHhCceEEEcCCCCHHHH----HHHHHHHHHHHHHhcCCCCCHH
Confidence 7888743 3456 88999999999999999999 5555554433 45544443
No 64
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.66 E-value=1.9e-16 Score=113.79 Aligned_cols=128 Identities=10% Similarity=0.101 Sum_probs=87.7
Q ss_pred cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHh
Q 025762 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (248)
+++|++..++.+.+.+.. ....+++|+||||||||++|+++++... .++.+++....... ....+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~~~~~-~~~~~~~--- 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEYLIDM-PMELLQK--- 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTHHHHC-HHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhCChHh-hhhHHHh---
Confidence 467888888777776643 4456899999999999999999998762 56667766532211 1111111
Q ss_pred hhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-CceEEEEEeCCC-cc----cChHHHHhhhhe--ee
Q 025762 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-KVTRFFFICNYI-SR----CTFSALFSFLLF--FM 211 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~~-~~----~~~~~l~~r~~~--i~ 211 (248)
++.++|+|||++.++.+.+..|++++++.. ...++|++||.. .. +. +.+..|+.. +.
T Consensus 74 --------------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~-~~L~~rl~~~~i~ 138 (143)
T 3co5_A 74 --------------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCE-EKLAGLFSESVVR 138 (143)
T ss_dssp --------------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHH-HHHHHHSSSEEEE
T ss_pred --------------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCcc-HHHHHHhcCcEEe
Confidence 123699999999999999999999999874 557789998843 21 44 677777654 55
Q ss_pred eccC
Q 025762 212 FFSL 215 (248)
Q Consensus 212 ~~~~ 215 (248)
++|+
T Consensus 139 lPpL 142 (143)
T 3co5_A 139 IPPL 142 (143)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 5543
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.66 E-value=1.7e-16 Score=144.67 Aligned_cols=166 Identities=22% Similarity=0.316 Sum_probs=109.2
Q ss_pred cccccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHH
Q 025762 60 VKDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~---------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (248)
+..++|++.+++.+...+.... ..+++|+||||||||++|+++++.+.+. ...++.++++........
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhccchhHH
Confidence 3567899999988877775431 1379999999999999999999998543 346777777665332111
Q ss_pred HHHHHHhHh-hhhcC-CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCC---
Q 025762 131 RTKIKTFAA-VAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY--- 194 (248)
Q Consensus 131 ~~~~~~~~~-~~~~~-~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~--- 194 (248)
...+..... ..... +.........++++|||||++.++++.++.|+++++++. .++.+|++||.
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~ 713 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSP 713 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHH
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChH
Confidence 111100000 00000 000000011235799999999999999999999999763 35668999996
Q ss_pred -----------------------CcccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHh
Q 025762 195 -----------------------ISRCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 195 -----------------------~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
...+. +++++|+. ++.|.|++.+++ ..++...+.
T Consensus 714 ~~~~~~~~~~~~~~l~~~v~~~~~~~f~-~~l~~Rl~~~i~~~pl~~edi----~~i~~~~l~ 771 (854)
T 1qvr_A 714 LILEGLQKGWPYERIRDEVFKVLQQHFR-PEFLNRLDEIVVFRPLTKEQI----RQIVEIQLS 771 (854)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSC-HHHHHTCSBCCBCCCCCHHHH----HHHHHHHHH
T ss_pred HHhhhcccccchHHHHHHHHHHHHhhCC-HHHHHhcCeEEeCCCCCHHHH----HHHHHHHHH
Confidence 22356 88999995 788999999998 555554443
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=3.1e-16 Score=130.65 Aligned_cols=181 Identities=18% Similarity=0.131 Sum_probs=113.8
Q ss_pred ccCccchhhccCCCccccccccHHHHHHHHHHHHc----CCCCeEEEEcCCCCcHHHHHHHHHHHhcCC----Ccc-ccc
Q 025762 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELY-KSR 115 (248)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~----~~~-~~~ 115 (248)
+.....|..++.| ++++|++..++.+..++.. ..+.+++|+||||||||++|+++++.+... ... ...
T Consensus 7 ~~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 83 (384)
T 2qby_B 7 KNPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVK 83 (384)
T ss_dssp CCTTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCE
T ss_pred cccHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCce
Confidence 3456677777766 5679999988888766643 345689999999999999999999987321 011 345
Q ss_pred eEEeccCCCc-c-hHHHHHHHHHhHhhhhc-CCCCCCC-------CCCCCceEEEEeCCCCCCHHH-HHH-HHHHHhhcC
Q 025762 116 VLELNASDDR-G-INVVRTKIKTFAAVAVG-SGQRRGG-------YPCPPYKIIILDEADSMTEDA-QNA-LRRTMETYS 183 (248)
Q Consensus 116 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~vlilDEi~~l~~~~-~~~-L~~~l~~~~ 183 (248)
++.+++.... . ...+......+...... .+..... .......+|+|||+|.+.... ++. +..+++..
T Consensus 84 ~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~- 162 (384)
T 2qby_B 84 QAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD- 162 (384)
T ss_dssp EEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-
T ss_pred EEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-
Confidence 6666654432 1 11222222221100000 0000000 001112399999999986542 455 55555544
Q ss_pred CceEEEEEeCCC---cccChHHHHhhh-heeeeccCCccccchHHHHHHHHHHhh
Q 025762 184 KVTRFFFICNYI---SRCTFSALFSFL-LFFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 184 ~~~~ii~~~n~~---~~~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
....+|++||.. ..+. +++.+|+ ..+.|+|++.+++ ..++...+..
T Consensus 163 ~~~~iI~~t~~~~~~~~l~-~~l~sr~~~~i~l~~l~~~~~----~~il~~~~~~ 212 (384)
T 2qby_B 163 ANISVIMISNDINVRDYME-PRVLSSLGPSVIFKPYDAEQL----KFILSKYAEY 212 (384)
T ss_dssp SCEEEEEECSSTTTTTTSC-HHHHHTCCCEEEECCCCHHHH----HHHHHHHHHH
T ss_pred cceEEEEEECCCchHhhhC-HHHHhcCCCeEEECCCCHHHH----HHHHHHHHHh
Confidence 667789999876 5677 9999995 5899999999999 7887777653
No 67
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.65 E-value=3.9e-16 Score=139.25 Aligned_cols=160 Identities=18% Similarity=0.117 Sum_probs=113.2
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
.-.|+++.|.+.+++.|.+.+.. ..+.++||+||||||||++|+++|+++ +..++.+++++
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~ 273 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHH
Confidence 35788999988888777766532 134579999999999999999999998 55777777755
Q ss_pred Ccch--HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcCC--ceEE
Q 025762 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSK--VTRF 188 (248)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~~--~~~i 188 (248)
..+. ......+......... ....||||||+|.+. ....+.|+..|+.... ...+
T Consensus 274 l~sk~~gese~~lr~lF~~A~~----------~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEAEK----------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHHTT----------SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred hhcccchHHHHHHHHHHHHHHH----------cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 3221 1112222222211111 123699999999873 3456778888876543 4557
Q ss_pred EEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 189 FFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
|.+||.+..++ +++++ ||. .|.+..|+.++. ..+++.++....+
T Consensus 344 IaaTN~~d~LD-~ALrR~GRFd~~I~i~~Pd~~~R----~~IL~~~l~~~~~ 390 (806)
T 3cf2_A 344 MAATNRPNSID-PALRRFGRFDREVDIGIPDATGR----LEILQIHTKNMKL 390 (806)
T ss_dssp EEECSSTTTSC-TTTTSTTSSCEEEECCCCCHHHH----HHHHHHTCSSSEE
T ss_pred EEecCChhhcC-HHHhCCcccceEEecCCCCHHHH----HHHHHHHhcCCCC
Confidence 88899999999 99998 887 699999999999 8888877655443
No 68
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.65 E-value=2.9e-15 Score=120.33 Aligned_cols=135 Identities=10% Similarity=0.045 Sum_probs=85.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcch------HHHHHHHHHhHhhhhcCCCCCCCCCCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
+..++|+||||||||++|+++|+.+ +..++.+++++.... ..+...+........ ...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~----------~~~ 99 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR----------KGN 99 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT----------TSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh----------cCC
Confidence 3469999999999999999999999 556666766543211 112222221110000 112
Q ss_pred ceEEEEeCCCCCCH-------------HHHHHHHHHHhhc-------------CCceEEEEEeCCCcccChHHHHh--hh
Q 025762 156 YKIIILDEADSMTE-------------DAQNALRRTMETY-------------SKVTRFFFICNYISRCTFSALFS--FL 207 (248)
Q Consensus 156 ~~vlilDEi~~l~~-------------~~~~~L~~~l~~~-------------~~~~~ii~~~n~~~~~~~~~l~~--r~ 207 (248)
..||+|||+|.+.. ..++.|+++++.. ..+..+|+|||.+..++ +++++ |+
T Consensus 100 ~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld-~al~R~~R~ 178 (293)
T 3t15_A 100 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLY-APLIRDGRM 178 (293)
T ss_dssp CCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC---CHHHHHHHE
T ss_pred CeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCC-HHHhCCCCC
Confidence 46999999998754 3458888888622 23466899999999999 89886 66
Q ss_pred heeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 208 LFFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
..+.+ .|+.++. ..+++.++...++.
T Consensus 179 d~~i~-~P~~~~r----~~Il~~~~~~~~~~ 204 (293)
T 3t15_A 179 EKFYW-APTREDR----IGVCTGIFRTDNVP 204 (293)
T ss_dssp EEEEE-CCCHHHH----HHHHHHHHGGGCCC
T ss_pred ceeEe-CcCHHHH----HHHHHHhccCCCCC
Confidence 64333 4588888 88888777665543
No 69
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=3.7e-16 Score=129.38 Aligned_cols=107 Identities=23% Similarity=0.280 Sum_probs=71.1
Q ss_pred cccccHHHHHHHHHHHHc---------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcc
Q 025762 62 DVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~---------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
.++|++.+++.+..++.. ....+++|+||||||||++|+++++.+ ..+++.+++.+...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADATTLTE 89 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechHHhcc
Confidence 368999999988887731 134579999999999999999999998 45677777654322
Q ss_pred hHHH----HHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHh
Q 025762 127 INVV----RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTME 180 (248)
Q Consensus 127 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~--------------~~~~L~~~l~ 180 (248)
.... ...+....... .+....+..++|||||+|.++.. .++.|+++|+
T Consensus 90 ~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 155 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKC------DYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE 155 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHT------TTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHh------hhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc
Confidence 1111 11111111110 00001112469999999988765 8999999999
No 70
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.61 E-value=1.2e-15 Score=121.34 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc-c--hHHHHHHHHHhHhhhhcCCCCCCCCCCCCce
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-G--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (248)
...+++|+||||||||++|+++++.+ ...++.+++++.. + .......+......... ...+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~------~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~ 126 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK----------SQLS 126 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHT----------SSEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHh----------cCCc
Confidence 44579999999999999999999997 4456666554321 1 11111111111111111 2257
Q ss_pred EEEEeCCCCC----------CHHHHHHHHHHHhhc---CCceEEEEEeCCCcccChH-HHHhhhh-eeeeccCCc-ccc
Q 025762 158 IIILDEADSM----------TEDAQNALRRTMETY---SKVTRFFFICNYISRCTFS-ALFSFLL-FFMFFSLLD-QIS 220 (248)
Q Consensus 158 vlilDEi~~l----------~~~~~~~L~~~l~~~---~~~~~ii~~~n~~~~~~~~-~l~~r~~-~i~~~~~~~-~~~ 220 (248)
+|||||+|.+ ....++.|...++.. .....+|++||.+..+. + .+.+|+. .+.+++++. +++
T Consensus 127 vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~-~~~l~~rf~~~i~~p~l~~r~~i 204 (272)
T 1d2n_A 127 CVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ-EMEMLNAFSTTIHVPNIATGEQL 204 (272)
T ss_dssp EEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH-HTTCTTTSSEEEECCCEEEHHHH
T ss_pred EEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc-hhhhhcccceEEcCCCccHHHHH
Confidence 9999999886 556677777777653 23445777888776665 5 5778854 688888877 555
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=2e-15 Score=125.48 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=108.7
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE----TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~----~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
....++...+.| +.++|++..++.+..++. ...+.+++|+||+|||||++++.+++.+.........++.+++
T Consensus 8 ~~~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 8 INREYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp SCGGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred cchhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 444455555555 567999999999988876 3456689999999999999999999987322100224445554
Q ss_pred CCCcchH-HHHHH------------------HHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC----HHHHHHHHHH
Q 025762 122 SDDRGIN-VVRTK------------------IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT----EDAQNALRRT 178 (248)
Q Consensus 122 ~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~----~~~~~~L~~~ 178 (248)
....... .+... ...+..... ......+|+|||++.+. .+....|++.
T Consensus 85 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~ 155 (386)
T 2qby_A 85 RQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---------DYGSQVVIVLDEIDAFVKKYNDDILYKLSRI 155 (386)
T ss_dssp HHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---------TCCSCEEEEEETHHHHHHSSCSTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---------ccCCeEEEEEcChhhhhccCcCHHHHHHhhc
Confidence 3211111 01110 111100000 01224699999999875 4456667666
Q ss_pred Hhhc-CCceEEEEEeCCC---cccChHHHHhhh--heeeeccCCccccchHHHHHHHHHHh
Q 025762 179 METY-SKVTRFFFICNYI---SRCTFSALFSFL--LFFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 179 l~~~-~~~~~ii~~~n~~---~~~~~~~l~~r~--~~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
++.. ..+..+|++++.. ..+. +.+.+|+ ..+.|+|++.+++ ..++...+.
T Consensus 156 ~~~~~~~~~~~I~~~~~~~~~~~~~-~~~~~r~~~~~i~l~~l~~~~~----~~il~~~~~ 211 (386)
T 2qby_A 156 NSEVNKSKISFIGITNDVKFVDLLD-PRVKSSLSEEEIIFPPYNAEEL----EDILTKRAQ 211 (386)
T ss_dssp HHSCCC--EEEEEEESCGGGGGGCT-THHHHTTTTEEEEECCCCHHHH----HHHHHHHHH
T ss_pred hhhcCCCeEEEEEEECCCChHhhhC-HHHhccCCCeeEEeCCCCHHHH----HHHHHHHHH
Confidence 6543 3456688888865 4566 8889998 4799999999999 777776654
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.59 E-value=8.3e-16 Score=137.17 Aligned_cols=156 Identities=20% Similarity=0.209 Sum_probs=105.6
Q ss_pred CCccccccccHHHHHHHHHHHHcC-------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
...|+++.|.+++++.|.+.+... ...++||+||||||||.+|+++|.++ ...++.+..++
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~ 546 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPE 546 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccch
Confidence 346888899999999887775321 23469999999999999999999998 55666665543
Q ss_pred C------cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhcC
Q 025762 124 D------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS 183 (248)
Q Consensus 124 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------------~~~~~L~~~l~~~~ 183 (248)
. .+...++..+..... ....||||||+|.+.. ...+.|+..|+...
T Consensus 547 l~s~~vGese~~vr~lF~~Ar~--------------~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 547 LLTMWFGESEANVREIFDKARQ--------------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HHTTTCSSCHHHHHHHHHHHHT--------------TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred hhccccchHHHHHHHHHHHHHH--------------cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 2 233344444443221 1136999999998732 24677888888654
Q ss_pred C--ceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 184 K--VTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 184 ~--~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
. ...+|.+||.+..++ +++++ ||. .+.++.|+.++. .++++.++.+..+
T Consensus 613 ~~~~V~vi~aTN~p~~lD-~AllRpgRfd~~i~v~lPd~~~R----~~il~~~l~~~~~ 666 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIID-PAILRPGRLDQLIYIPLPDEKSR----VAILKANLRKSPV 666 (806)
T ss_dssp SSSSEEEECC-CCSSSSC-HHHHSTTTSCCEEEC-----CHH----HHTTTTTSSCC--
T ss_pred CCCCEEEEEeCCCchhCC-HhHcCCCcceEEEEECCcCHHHH----HHHHHHHhcCCCC
Confidence 3 344666889999999 99998 887 688999988888 7777666655443
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=7.9e-15 Score=125.20 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=93.6
Q ss_pred ccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhh
Q 025762 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (248)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (248)
..++|++.+++.+..++..+. +++|+||||||||++|+++++.+... ..+....+..... ..++......
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~----~~f~~~~~~~~t~----~dL~G~~~~~ 91 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNA----RAFEYLMTRFSTP----EEVFGPLSIQ 91 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSC----CEEEEECCTTCCH----HHHHCCBC--
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhh----hHHHHHHHhcCCH----HHhcCcccHH
Confidence 457899999999988887776 99999999999999999999987321 1222222221111 1111110000
Q ss_pred hh-cCC-C-CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC----------CceEEEEEeCCCcc---cChHHHH
Q 025762 141 AV-GSG-Q-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYISR---CTFSALF 204 (248)
Q Consensus 141 ~~-~~~-~-~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~----------~~~~ii~~~n~~~~---~~~~~l~ 204 (248)
.. ..+ . ....-.....+||+|||++++++..++.|+.+|+++. +...+|++||+... .. +++.
T Consensus 92 ~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~-~aLl 170 (500)
T 3nbx_X 92 ALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSL-EALY 170 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTT-HHHH
T ss_pred HHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccH-HHHH
Confidence 00 000 0 0000011124699999999999999999999998642 12235888885322 44 6999
Q ss_pred hhhh-eeeeccCCc-ccc
Q 025762 205 SFLL-FFMFFSLLD-QIS 220 (248)
Q Consensus 205 ~r~~-~i~~~~~~~-~~~ 220 (248)
+||. .+.+++|+. ++.
T Consensus 171 dRF~~~i~v~~p~~~ee~ 188 (500)
T 3nbx_X 171 DRMLIRLWLDKVQDKANF 188 (500)
T ss_dssp TTCCEEEECCSCCCHHHH
T ss_pred HHHHHHHHHHHhhhhhhH
Confidence 9986 478888877 455
No 74
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.58 E-value=2.2e-14 Score=122.37 Aligned_cols=158 Identities=22% Similarity=0.173 Sum_probs=104.8
Q ss_pred CCCccccccccHHHHHHHHHHHHcC------------CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
.+..|++++|+++++..+.+.+..- -..+++|+||||||||++|++++..+ ...++.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~------~~~~i~i~g~~ 99 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSD 99 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCCEEEEEGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEehhH
Confidence 5568999999999887776654321 13469999999999999999999998 34566676655
Q ss_pred Ccch--HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhcCC--c
Q 025762 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYSK--V 185 (248)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--------------~~~~~L~~~l~~~~~--~ 185 (248)
.... ......+..+.... .....++++|||+|.+.. ...+.|+..|+.... .
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a----------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~ 169 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETA----------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTS----------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCC
T ss_pred HHHhhhhhHHHHHHHHHHHH----------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCcc
Confidence 4221 11111111111100 001236999999987731 344566666665443 3
Q ss_pred eEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhh
Q 025762 186 TRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
..++.++|.+..++ +++++ ||. .+.+.+|+.++. .++++..+..
T Consensus 170 viviAatn~p~~LD-~aLlr~gRfdr~i~i~~Pd~~~R----~~IL~~~~~~ 216 (499)
T 2dhr_A 170 IVVMAATNRPDILD-PALLRPGRFDRQIAIDAPDVKGR----EQILRIHARG 216 (499)
T ss_dssp CEEEECCSCGGGSC-TTTSSTTSSCCEEECCCCCHHHH----HHHHHHTTSS
T ss_pred EEEEEecCChhhcC-cccccccccceEEecCCCCHHHH----HHHHHHHHhc
Confidence 45677778888888 99988 555 689999999988 7887766544
No 75
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.58 E-value=2.7e-14 Score=112.37 Aligned_cols=161 Identities=22% Similarity=0.171 Sum_probs=100.9
Q ss_pred ccCCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 54 KYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
...+..|++++|.+.++..+...... .-..+++|+||||||||+++++++..+. ..++.+++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~~ 82 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 82 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeeH
Confidence 34456889999998887766554421 1134699999999999999999999872 34444444
Q ss_pred CCCcc--hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhhcCC-
Q 025762 122 SDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYSK- 184 (248)
Q Consensus 122 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~~~~- 184 (248)
.+... .......+......... ....++++||+|.+. ....+.++..++....
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKR----------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTT----------SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHh----------cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 32110 01111111111111110 113699999997652 1234556666665443
Q ss_pred -ceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhc
Q 025762 185 -VTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 185 -~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
...++.++|.+..++ +++++ |+. .+.+.+|+.++. .++++..+...
T Consensus 153 ~~~i~~a~t~~p~~ld-~~l~r~~rf~~~i~i~~p~~~~r----~~il~~~~~~~ 202 (254)
T 1ixz_A 153 TAIVVMAATNRPDILD-PALLRPGRFDRQIAIDAPDVKGR----EQILRIHARGK 202 (254)
T ss_dssp CCEEEEEEESCGGGSC-GGGGSTTSSCEEEECCSCCHHHH----HHHHHHHHTTS
T ss_pred CCEEEEEccCCchhCC-HHHcCCCcCCeEEeeCCcCHHHH----HHHHHHHHcCC
Confidence 344667778888888 99988 565 589999999988 77777666543
No 76
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.58 E-value=1.4e-15 Score=133.58 Aligned_cols=56 Identities=30% Similarity=0.382 Sum_probs=49.7
Q ss_pred hhhccCCCccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
...+++|..+++++|++.+++.+...+..+. +++|+||||||||++|++++..+..
T Consensus 31 ~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp GGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3457889999999999999999998888775 8999999999999999999998743
No 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.3e-13 Score=109.49 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=100.9
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
...|+++.|.+++++.|.+.+.. .-..+++|+||||||||+++++++..+ ...++.++..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~------~~~~i~i~g~~ 79 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES------GLNFISVKGPE 79 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEEETTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc------CCCEEEEEcHH
Confidence 35788999999888888765421 123459999999999999999999987 33466666655
Q ss_pred Ccch--HHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhcC--CceEE
Q 025762 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRF 188 (248)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~-----------~~~~~L~~~l~~~~--~~~~i 188 (248)
.... ......+.......... ...++++||++.+.. ...+.++..|+... ....+
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~~~----------~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAKNS----------APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHHHT----------CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred HHhhhhhHHHHHHHHHHHHHHhc----------CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 4221 11222222221111010 136999999998631 23455666666543 33456
Q ss_pred EEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhh
Q 025762 189 FFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 189 i~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
+.++|.+..++ +++++ |+. .+.+..|+.++. ..+++.++..
T Consensus 150 ia~tn~p~~LD-~al~r~gRfd~~i~~~~P~~~~r----~~il~~~~~~ 193 (274)
T 2x8a_A 150 MAATNRPDIID-PAILRPGRLDKTLFVGLPPPADR----LAILKTITKN 193 (274)
T ss_dssp EEEESCGGGSC-HHHHSTTSSCEEEECCSCCHHHH----HHHHHHHTTT
T ss_pred EeecCChhhCC-HhhcCcccCCeEEEeCCcCHHHH----HHHHHHHHhc
Confidence 77789999998 99987 887 588999999999 8888877654
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.54 E-value=1.2e-13 Score=110.13 Aligned_cols=159 Identities=22% Similarity=0.173 Sum_probs=99.0
Q ss_pred CCCccccccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 56 RPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
.+..|++++|.+.++..+...... .-..+++|+||||||||+++++++..+. ..++.+++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~~~~ 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSD 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC------CCEEEecHHH
Confidence 456899999998888776655432 1134699999999999999999999872 3444454432
Q ss_pred Ccc--hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------H---HHHHHHHHHHhhcCC--c
Q 025762 124 DRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------E---DAQNALRRTMETYSK--V 185 (248)
Q Consensus 124 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~---~~~~~L~~~l~~~~~--~ 185 (248)
... .......+......... ....++++||++.+. . ...+.++..++.... .
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKR----------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHT----------SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHh----------cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 110 01111111111111110 013699999997652 1 223344444544332 3
Q ss_pred eEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhc
Q 025762 186 TRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLK 235 (248)
Q Consensus 186 ~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (248)
..++.++|.+..++ +++.+ |+. .+.|.+|+.++. .++++..+...
T Consensus 179 ~i~~a~t~~p~~ld-~~l~r~~rf~~~i~i~~p~~~~r----~~il~~~~~~~ 226 (278)
T 1iy2_A 179 IVVMAATNRPDILD-PALLRPGRFDRQIAIDAPDVKGR----EQILRIHARGK 226 (278)
T ss_dssp EEEEEEESCTTSSC-HHHHSTTSSCCEEECCCCCHHHH----HHHHHHHHTTS
T ss_pred EEEEEecCCchhCC-HhHcCCCcCCeEEEeCCcCHHHH----HHHHHHHHccC
Confidence 45667788888888 99988 555 689999999998 77777766543
No 79
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.54 E-value=1.8e-14 Score=118.29 Aligned_cols=151 Identities=8% Similarity=-0.063 Sum_probs=113.4
Q ss_pred HHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCC
Q 025762 76 TLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (248)
Q Consensus 76 ~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
.+...-.+.++|+||+|.||++.+..+++.+.+.+......+.++.. ..+++........... ++
T Consensus 12 ~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~plf----------~~ 76 (343)
T 1jr3_D 12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----TDWNAIFSLCQAMSLF----------AS 76 (343)
T ss_dssp HHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----CCHHHHHHHHHHHHHC----------CS
T ss_pred HHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----CCHHHHHHHhcCcCCc----------cC
Confidence 33334456799999999999999999999875543322233444421 2233333333322222 23
Q ss_pred ceEEEEeCCCC-CCHHHHHHHHHHHhhcCCceEEEEEeCCC------cccChHHHHhhhheeeeccCCccccchHHHHHH
Q 025762 156 YKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRCTFSALFSFLLFFMFFSLLDQISFDKEYIRI 228 (248)
Q Consensus 156 ~~vlilDEi~~-l~~~~~~~L~~~l~~~~~~~~ii~~~n~~------~~~~~~~l~~r~~~i~~~~~~~~~~~~~~~~~l 228 (248)
+.|++|||++. ++.+.++.|++.+++.++.+.+|++++.. ..+. +++.+||.++.|.+++.+++ ..++
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~-~~i~sr~~~~~~~~l~~~~l----~~~l 151 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWF-TALANRSVQVTCQTPEQAQL----PRWV 151 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHH-HHHTTTCEEEEECCCCTTHH----HHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHH-HHHHhCceEEEeeCCCHHHH----HHHH
Confidence 57999999999 99999999999999999999999888753 4566 89999999999999999999 9999
Q ss_pred HHHHhhcCccccCceeee
Q 025762 229 IYASTLKFLEGFGLSLTY 246 (248)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~ 246 (248)
..++.++|+..+++++.+
T Consensus 152 ~~~~~~~g~~i~~~a~~~ 169 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQV 169 (343)
T ss_dssp HHHHHHTTCEECHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHH
Confidence 999999999988876543
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=1e-15 Score=133.85 Aligned_cols=161 Identities=17% Similarity=0.110 Sum_probs=98.7
Q ss_pred cccccccHHHHHHHHHHHHcCCC-----------CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH
Q 025762 60 VKDVAHQEEVVRVLTNTLETANC-----------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~-----------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (248)
...++|++.+++.+..++..+.. .|++|+||||||||++|+++++.+....+ ... ....+.+.....
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~-~~~-~~~~~~~l~~~~ 371 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVY-TTG-KGSTAAGLTAAV 371 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEEC-CCT-TCSTTTTSEEEC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCcee-cCC-Ccccccccccee
Confidence 34678999998888766655521 17999999999999999999998721110 000 001111111000
Q ss_pred HHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEEeCCC
Q 025762 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYI 195 (248)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~n~~ 195 (248)
.... .........+....+.+++++|||+|.++++.++.|+++|+++. ....+|.++|+.
T Consensus 372 -~~~~------~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 372 -VREK------GTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp -SSGG------GTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred -eecc------ccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 0000 00000011111222345799999999999999999999998654 345688889976
Q ss_pred c-------------ccChHHHHhhhh-eeeeccCCccccchHHHHHHHHHHhh
Q 025762 196 S-------------RCTFSALFSFLL-FFMFFSLLDQISFDKEYIRIIYASTL 234 (248)
Q Consensus 196 ~-------------~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~ 234 (248)
. .++ +++++||. .+.+.+++..+. ..+++++...
T Consensus 445 ~G~~~~~~~~~~ni~l~-~aLl~RFDl~~~~~~~~~~e~----~~i~~~il~~ 492 (595)
T 3f9v_A 445 FGRYISERPVSDNINLP-PTILSRFDLIFILKDQPGEQD----RELANYILDV 492 (595)
T ss_dssp TCCSCTTSCSCTTTCSC-SSSGGGCSCCEEECCTTHHHH----HHHHHHHHTT
T ss_pred CCccCcccCchhccCCC-HHHHhhCeEEEEeCCCCCHHH----HHHHHHHHHH
Confidence 5 788 99999995 455555444334 4555555543
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.52 E-value=2.5e-14 Score=106.65 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=79.5
Q ss_pred hccCCCccccccc----cHHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 53 EKYRPKQVKDVAH----QEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 53 ~~~~~~~~~~~~g----~~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
++|++..|+++++ ++.+.+.+..++... .+.+++|+||+|+||||++++++..+....+. .+..++..+
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~~~~-- 77 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFDTKD-- 77 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEEHHH--
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEEHHH--
Confidence 4567778888875 345555555555432 45689999999999999999999998311111 111222111
Q ss_pred chHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCC--CCCHHHHHHHHHHHhhcC-CceEEEEEeCCCccc
Q 025762 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYS-KVTRFFFICNYISRC 198 (248)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~--~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~~~~~ 198 (248)
............ ..........+.++|+|||++ .+++.....|+.+++... ....+|++||.....
T Consensus 78 ---~~~~~~~~~~~~----~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 78 ---LIFRLKHLMDEG----KDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp ---HHHHHHHHHHHT----CCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred ---HHHHHHHHhcCc----hHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 111111111000 000000000124699999998 567888888999888765 456788999866443
No 82
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.49 E-value=3.7e-13 Score=112.75 Aligned_cols=69 Identities=17% Similarity=0.067 Sum_probs=53.0
Q ss_pred CceEEEEeCCCCCCH------------HHHHHHHHHHhhc----------CCceEEEEEe----CCCcccChHHHHhhhh
Q 025762 155 PYKIIILDEADSMTE------------DAQNALRRTMETY----------SKVTRFFFIC----NYISRCTFSALFSFLL 208 (248)
Q Consensus 155 ~~~vlilDEi~~l~~------------~~~~~L~~~l~~~----------~~~~~ii~~~----n~~~~~~~~~l~~r~~ 208 (248)
+.+++++||+|++.. .+|++|+++++.. ..+..||+++ +.+..+. |++.+|+.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dli-pel~~R~~ 328 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLI-PELQGRLP 328 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSC-HHHHTTCC
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcc-hHHhcccc
Confidence 356999999998842 2678999999963 2344577776 2344577 89999999
Q ss_pred e-eeeccCCccccchHHHHHH
Q 025762 209 F-FMFFSLLDQISFDKEYIRI 228 (248)
Q Consensus 209 ~-i~~~~~~~~~~~~~~~~~l 228 (248)
+ +.|++++.+++ ..++
T Consensus 329 i~i~l~~lt~~e~----~~Il 345 (444)
T 1g41_A 329 IRVELTALSAADF----ERIL 345 (444)
T ss_dssp EEEECCCCCHHHH----HHHH
T ss_pred eeeeCCCCCHHHH----HHHH
Confidence 6 89999999999 6666
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.49 E-value=1.3e-15 Score=137.51 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=106.9
Q ss_pred CCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (248)
...|+++.|.+.+++.|...+.. ..+.+++|+||||||||++|++++..+. ..++.+++++
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~------~~~i~v~~~~ 546 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGPE 546 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT------CCCCCCCCSS
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC------CCEEEEechH
Confidence 34678889999999888877642 1345799999999999999999999983 3444455544
Q ss_pred Ccc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhhcC
Q 025762 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYS 183 (248)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~--------------~~~~~~L~~~l~~~~ 183 (248)
... ...+...+....... .+++|+||+|.+. ...++.|+..|+...
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~--------------p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAA--------------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHC--------------SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred hhhhhcCccHHHHHHHHHHHHhcC--------------CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 321 122333333222111 2599999998762 234566777776543
Q ss_pred --CceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 184 --KVTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 184 --~~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
....+|++||.+..++ +++++ ||. .+.|+.|+.++. ..+++..+....+
T Consensus 613 ~~~~v~vI~tTN~~~~ld-~allrpgRf~~~i~~~~p~~~~r----~~Il~~~l~~~~~ 666 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIID-PAILRPGRLDQLIYIPLPDEKSR----VAILKANLRKSPV 666 (806)
T ss_dssp ---CCBCCCCCBSCGGGS-CTTSSGGGTTSCCCCCCCCCSHH----HHHTTTTTSCC--
T ss_pred ccCCeEEEEecCCcccCC-HHHhCccccCceeecCCCCHHHH----HHHHHHHhccCCC
Confidence 3445788889999999 99998 997 799999999999 8888777655443
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.49 E-value=1.3e-13 Score=124.62 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=111.2
Q ss_pred cCCCccccccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEecc
Q 025762 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (248)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (248)
..+..|++++|.+.+++.|.+++.. ..+.+++|+||||||||++|++++..+ ...++.+++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l------~~~~i~v~~ 271 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLING 271 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT------TCEEEEEEH
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCcEEEEEc
Confidence 4456789999998888888777653 345679999999999999999999987 445566665
Q ss_pred CCCcc------hHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhhcCC
Q 025762 122 SDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSK 184 (248)
Q Consensus 122 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~-----------~~~~~~L~~~l~~~~~ 184 (248)
.+... ...+...+..... . ...++|+||++.+. ...++.|+.+++....
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~---~-----------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEK---N-----------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHH---H-----------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHh---c-----------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc
Confidence 43211 1112222222211 1 13699999998763 3456778888876543
Q ss_pred --ceEEEEEeCCCcccChHHHHh--hhh-eeeeccCCccccchHHHHHHHHHHhhcCc
Q 025762 185 --VTRFFFICNYISRCTFSALFS--FLL-FFMFFSLLDQISFDKEYIRIIYASTLKFL 237 (248)
Q Consensus 185 --~~~ii~~~n~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (248)
...+|++||++..++ +++.+ |+. .+.+..|+.++. ..++..++....+
T Consensus 338 ~~~v~vI~atn~~~~ld-~al~r~gRf~~~i~i~~p~~~~r----~~il~~~~~~~~l 390 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSID-PALRRFGRFDREVDIGIPDATGR----LEILQIHTKNMKL 390 (806)
T ss_dssp TSCCEEEEECSCTTTSC-TTTTSTTSSCEEECCCCCCHHHH----HHHHHHTTTTSCC
T ss_pred cccEEEecccCCchhcC-HHHhcccccccccccCCCCHHHH----HHHHHHHHhcCCC
Confidence 456788889988888 88887 775 588999999888 8888776655443
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=1.1e-12 Score=94.51 Aligned_cols=101 Identities=12% Similarity=0.156 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEE
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 160 (248)
.+..++|+||+|+|||+|+++++..+... +...+.++..+.... .+ ..+.++|+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---g~~~~~~~~~~~~~~--------~~---------------~~~~~lLi 88 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA---GKNAAYIDAASMPLT--------DA---------------AFEAEYLA 88 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT---TCCEEEEETTTSCCC--------GG---------------GGGCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEcHHHhhHH--------HH---------------HhCCCEEE
Confidence 56689999999999999999999988532 223455555544322 00 01236999
Q ss_pred EeCCCCCCHHHHHHHHHHHhhcCCc-e-EEEEEeCCC-c--ccChHHHHhhhh
Q 025762 161 LDEADSMTEDAQNALRRTMETYSKV-T-RFFFICNYI-S--RCTFSALFSFLL 208 (248)
Q Consensus 161 lDEi~~l~~~~~~~L~~~l~~~~~~-~-~ii~~~n~~-~--~~~~~~l~~r~~ 208 (248)
|||++.+....+..|+.+++..... . .+|++++.. . ... +.+.||+.
T Consensus 89 lDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 89 VDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIR-EDLRTRMA 140 (149)
T ss_dssp EESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCC-HHHHHHGG
T ss_pred EeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHcccc-HHHHHHHh
Confidence 9999999877788898988865533 2 478888743 2 234 78999976
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.34 E-value=1.5e-11 Score=102.42 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=101.6
Q ss_pred cccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHh
Q 025762 60 VKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (248)
+..++|+...++.+...+.. ....+++|+|++|||||++|+++...... ...+++.++|...........++. .
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r---~~~~fv~v~~~~~~~~~~~~elfg-~ 211 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR---SKEPFVALNVASIPRDIFEAELFG-Y 211 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT---TTSCEEEEETTTSCHHHHHHHHHC-B
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC---CCCCeEEEecCCCCHHHHHHHhcC-C
Confidence 34567776666666555433 23446999999999999999999887522 245788889887543222222221 1
Q ss_pred Hhhhhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCC-------Ccc
Q 025762 138 AAVAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY-------ISR 197 (248)
Q Consensus 138 ~~~~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~-------~~~ 197 (248)
...... .....+....++++.|||||++.++.+.|..|+++++++. ...++|++||. ...
T Consensus 212 ~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 212 EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 110000 0112233344567899999999999999999999998742 35678999985 245
Q ss_pred cChHHHHhhhhe--eeeccCCc--ccc
Q 025762 198 CTFSALFSFLLF--FMFFSLLD--QIS 220 (248)
Q Consensus 198 ~~~~~l~~r~~~--i~~~~~~~--~~~ 220 (248)
+. +.+..|+.. +.++|+.+ +++
T Consensus 292 fr-~dl~~rl~~~~i~lPpLreR~~Di 317 (387)
T 1ny5_A 292 FR-EDLYYRLGVIEIEIPPLRERKEDI 317 (387)
T ss_dssp SC-HHHHHHHTTEEEECCCGGGCHHHH
T ss_pred cc-HHHHHhhcCCeecCCcchhccccH
Confidence 66 788888764 55666655 455
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.33 E-value=3.3e-12 Score=96.82 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=71.3
Q ss_pred hhhccCCCccccccccH----HHHHHHHHHHHcCC----CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC
Q 025762 51 WVEKYRPKQVKDVAHQE----EVVRVLTNTLETAN----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (248)
Q Consensus 51 ~~~~~~~~~~~~~~g~~----~~~~~l~~~l~~~~----~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (248)
+...+.+..|+++++.. .+.+.+..++.... ..+++|+||||||||++|++++..+...+ ..+..+.+.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~~~~ 91 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIVYVP 91 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEEEHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEhH
Confidence 34455667888887643 34455666665441 26899999999999999999999984332 233333332
Q ss_pred CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHH--HHHHHH-HHHhhc-CCceEEEEEeCCC
Q 025762 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALR-RTMETY-SKVTRFFFICNYI 195 (248)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~--~~~~L~-~~l~~~-~~~~~ii~~~n~~ 195 (248)
+. .......... .............++|+|||++..+.. .+..++ .+++.+ .....+|++||..
T Consensus 92 ~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 92 EL-----FRELKHSLQD----QTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HH-----HHHHHHC-------CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HH-----HHHHHHHhcc----chHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11 0000000000 000000000001259999999776433 244343 466654 3455689999854
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.32 E-value=1.1e-12 Score=105.76 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=69.7
Q ss_pred hccCCCcccccccc----HHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHHhc-CCCccccceEEeccCCC
Q 025762 53 EKYRPKQVKDVAHQ----EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDD 124 (248)
Q Consensus 53 ~~~~~~~~~~~~g~----~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~ 124 (248)
..+.+..|+++.+. ..+...+..++... ...+++|+||||||||+||.+++..+. ..+ ..+..+...+
T Consensus 116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~~~~~- 191 (308)
T 2qgz_A 116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLLHFPS- 191 (308)
T ss_dssp GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEEEHHH-
T ss_pred HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEEEHHH-
Confidence 44556788888753 23444555666543 256899999999999999999999884 322 1233232221
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHH-HHHhhcC-CceEEEEEeCCC
Q 025762 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALR-RTMETYS-KVTRFFFICNYI 195 (248)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~--~~~~~L~-~~l~~~~-~~~~ii~~~n~~ 195 (248)
.+......... ...........+.++|||||++..+. ..++.|+ .+++.+. ....+|++||..
T Consensus 192 ----l~~~l~~~~~~----~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 192 ----FAIDVKNAISN----GSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp ----HHHHHHCCCC--------CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred ----HHHHHHHHhcc----chHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 11111100000 00000000011346999999976543 2333343 4666552 445689999853
No 89
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.31 E-value=1.9e-11 Score=100.97 Aligned_cols=153 Identities=17% Similarity=0.126 Sum_probs=100.0
Q ss_pred cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHh
Q 025762 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (248)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (248)
.++|+......+...+.. .....++++|++||||+.+|+++....... ..++.++|...........++... .
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~----~~fv~vnc~~~~~~~~~~~lfg~~-~ 204 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK----GAFVDLNCASIPQELAESELFGHE-K 204 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC----SCEEEEESSSSCTTTHHHHHHEEC-S
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc----CCcEEEEcccCChHHHHHHhcCcc-c
Confidence 467776666555444322 233469999999999999999998876322 128888888764332222222210 0
Q ss_pred hhhc--CCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEEeCCC-------cccC
Q 025762 140 VAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRCT 199 (248)
Q Consensus 140 ~~~~--~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~n~~-------~~~~ 199 (248)
.... .....+....++.+.|||||++.++...|..|+++++++. -..++|++||.. ..+.
T Consensus 205 g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr 284 (368)
T 3dzd_A 205 GAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFR 284 (368)
T ss_dssp CSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred cccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCcc
Confidence 0000 0011222334566899999999999999999999998753 245689999842 4455
Q ss_pred hHHHHhhhhe--eeeccCCc--ccc
Q 025762 200 FSALFSFLLF--FMFFSLLD--QIS 220 (248)
Q Consensus 200 ~~~l~~r~~~--i~~~~~~~--~~~ 220 (248)
+.|..|+.. +.++|+.+ +++
T Consensus 285 -~dL~~rl~~~~i~lPpLreR~~Di 308 (368)
T 3dzd_A 285 -EDLYYRLSVFQIYLPPLRERGKDV 308 (368)
T ss_dssp -HHHHHHHTSEEEECCCGGGSTTHH
T ss_pred -HHHHHHhCCeEEeCCChhhchhhH
Confidence 789999875 66777777 566
No 90
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.28 E-value=1.7e-11 Score=102.85 Aligned_cols=181 Identities=16% Similarity=0.164 Sum_probs=101.9
Q ss_pred cCccchhhccCCCccccccccHHHHHHHHHHH-H----c--CCCCeEEE--EcCCCCcHHHHHHHHHHHhcCCC---ccc
Q 025762 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-E----T--ANCPHMLF--YGPPGTGKTTTALAIAHQLFGPE---LYK 113 (248)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l-~----~--~~~~~ill--~Gp~G~GKT~la~~la~~~~~~~---~~~ 113 (248)
....++...+.| ..++|++..++.|..++ . . ....+++| +||+|+|||++++.+++.+.... ...
T Consensus 10 ~~~~~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 86 (412)
T 1w5s_A 10 KDRRVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLT 86 (412)
T ss_dssp SCGGGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHhhcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCc
Confidence 334444444444 56789998888887776 3 2 24557899 99999999999999998873210 012
Q ss_pred cceEEeccCCCcc-hHHHHHHHHHhHhhhhcCCCCCC--------C-CCCCCceEEEEeCCCCCC------HHHHHHHHH
Q 025762 114 SRVLELNASDDRG-INVVRTKIKTFAAVAVGSGQRRG--------G-YPCPPYKIIILDEADSMT------EDAQNALRR 177 (248)
Q Consensus 114 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~vlilDEi~~l~------~~~~~~L~~ 177 (248)
..++.+++..... ...+......+.......+.... . ....+..+|||||+|.+. .+.+..|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~ 166 (412)
T 1w5s_A 87 VKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLR 166 (412)
T ss_dssp EEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHH
Confidence 3445555433222 12222222211000000000000 0 001234689999999974 366676777
Q ss_pred HHhhcC-----CceEEEEEeCCCccc--Ch---HHHHhhhh-eeeeccCCccccchHHHHHHHHHHh
Q 025762 178 TMETYS-----KVTRFFFICNYISRC--TF---SALFSFLL-FFMFFSLLDQISFDKEYIRIIYAST 233 (248)
Q Consensus 178 ~l~~~~-----~~~~ii~~~n~~~~~--~~---~~l~~r~~-~i~~~~~~~~~~~~~~~~~l~~~~~ 233 (248)
.+.... .+..+|++++..... .. +.+.+++. .+.|.|++.+++ ..++...+.
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~----~~ll~~~~~ 229 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSREL----YTILEQRAE 229 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHH----HHHHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHH----HHHHHHHHH
Confidence 776554 455677777644311 11 23334433 499999999999 777765544
No 91
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.25 E-value=4.8e-12 Score=105.70 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=88.9
Q ss_pred ccccHHHHHHHHHHHHcCC-----CCeEEEEcCCCCcHHHHHHHH-HHHhcCCCccccceEEeccCCCcchHHHHHHHHH
Q 025762 63 VAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAI-AHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (248)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~-----~~~ill~Gp~G~GKT~la~~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (248)
+.|++.+++.|.-++..+. .-|+||.|+||| ||.+|+++ ++.+ .. .... ........ .+...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-pR------~~ft-~g~~ss~~---gLt~s 282 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-PR------GVYV-DLRRTELT---DLTAV 282 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-SS------EEEE-EGGGCCHH---HHSEE
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-CC------eEEe-cCCCCCcc---CceEE
Confidence 7899999888876665542 127999999999 99999999 6554 11 1111 11100000 01100
Q ss_pred hHhhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhc---------CCceEEEEEeCCCc-----------
Q 025762 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---------SKVTRFFFICNYIS----------- 196 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~---------~~~~~ii~~~n~~~----------- 196 (248)
.... .+.....|....++.+++++||++.+++..+..|++.|+++ +..+.+|.++|+..
T Consensus 283 ~r~~-tG~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~ 361 (506)
T 3f8t_A 283 LKED-RGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARI 361 (506)
T ss_dssp EEES-SSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGC
T ss_pred EEcC-CCcccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCcccc
Confidence 0000 01222344455667789999999999999999999999975 45667888889753
Q ss_pred ccChHHHHhhhhe
Q 025762 197 RCTFSALFSFLLF 209 (248)
Q Consensus 197 ~~~~~~l~~r~~~ 209 (248)
.++ +++++||..
T Consensus 362 ~Lp-~alLDRFDL 373 (506)
T 3f8t_A 362 DLD-QDFLSHFDL 373 (506)
T ss_dssp CSC-HHHHTTCSE
T ss_pred CCC-hHHhhheee
Confidence 788 999999964
No 92
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.24 E-value=3e-11 Score=90.23 Aligned_cols=121 Identities=19% Similarity=0.266 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCC
Q 025762 68 EVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (248)
Q Consensus 68 ~~~~~l~~~l~~~-~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
..+..+..++..- ...+++|+||||||||++|.++++.+.+ .+..+..... ... +..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g------~i~~fans~s-~f~-----l~~---------- 100 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTS-HFW-----LEP---------- 100 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSS-CGG-----GGG----------
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC------CeeeEEeccc-hhh-----hcc----------
Confidence 3455666666542 2336999999999999999999999821 1111111100 000 000
Q ss_pred CCCCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHhhcC-------------CceEEEEEeCC---CcccChHHHHhhhhe
Q 025762 147 RRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMETYS-------------KVTRFFFICNY---ISRCTFSALFSFLLF 209 (248)
Q Consensus 147 ~~~~~~~~~~~vlilDEi~~l~~~~-~~~L~~~l~~~~-------------~~~~ii~~~n~---~~~~~~~~l~~r~~~ 209 (248)
.....+++|||++...-+. ...+..+++..+ ....+|+|||. ..... +.|.||+..
T Consensus 101 ------l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~-~~L~SRi~~ 173 (212)
T 1tue_A 101 ------LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRW-PYLESRITV 173 (212)
T ss_dssp ------GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSC-HHHHTSCEE
T ss_pred ------cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccch-hhhhhhEEE
Confidence 0113599999998543222 234666666542 12458999996 33344 789999999
Q ss_pred eeeccCCc
Q 025762 210 FMFFSLLD 217 (248)
Q Consensus 210 i~~~~~~~ 217 (248)
+.|+.+-+
T Consensus 174 f~F~~~~p 181 (212)
T 1tue_A 174 FEFPNAFP 181 (212)
T ss_dssp EECCSCCC
T ss_pred EEcCCCCC
Confidence 99884443
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=4.7e-11 Score=118.06 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=90.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhh-cCCCCCCCCCCCCceEEEE
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-GSGQRRGGYPCPPYKIIIL 161 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vlil 161 (248)
++++|+||||||||++|+.+.... . ...+..++.+.......+...+........ ..+..-+....+++.|+||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~--~---~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS--S---LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC--S---SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC--C---CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 499999999999999996665543 1 335666777766555544444433211100 0000000011234569999
Q ss_pred eCCCCCCH------HHHHHHHHHHhhcC------------CceEEEEEeCCC-----cccChHHHHhhhheeeeccCCcc
Q 025762 162 DEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRCTFSALFSFLLFFMFFSLLDQ 218 (248)
Q Consensus 162 DEi~~l~~------~~~~~L~~~l~~~~------------~~~~ii~~~n~~-----~~~~~~~l~~r~~~i~~~~~~~~ 218 (248)
||++.... ...+.|.++++... .+..+|.++|++ ..++ +++.+||.++.++.|+.+
T Consensus 1343 DEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~-~rllRrf~vi~i~~P~~~ 1421 (2695)
T 4akg_A 1343 DEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMS-ERFTRHAAILYLGYPSGK 1421 (2695)
T ss_dssp ETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCC-HHHHTTEEEEECCCCTTT
T ss_pred cccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCC-hhhhheeeEEEeCCCCHH
Confidence 99876432 36777777777422 134578888987 3688 999999999999999999
Q ss_pred ccchHHHHHHHHHH
Q 025762 219 ISFDKEYIRIIYAS 232 (248)
Q Consensus 219 ~~~~~~~~~l~~~~ 232 (248)
++ ..++..++
T Consensus 1422 ~l----~~I~~~il 1431 (2695)
T 4akg_A 1422 SL----SQIYEIYY 1431 (2695)
T ss_dssp HH----HHHHHHHH
T ss_pred HH----HHHHHHHH
Confidence 99 66655554
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.21 E-value=1.9e-10 Score=94.12 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=96.9
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc------chHH-HH
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINV-VR 131 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~ 131 (248)
....++|++...+.|..++..+ +.++|+||+|+|||++++.+++.+ . .+.+++.... .... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHHHHHH
Confidence 4456799999999999888765 589999999999999999999886 1 2333332110 1111 11
Q ss_pred HHHHHhHh------h--------hhcCCCCCCCC----------C-CCCceEEEEeCCCCCCH-------HHHHHHHHHH
Q 025762 132 TKIKTFAA------V--------AVGSGQRRGGY----------P-CPPYKIIILDEADSMTE-------DAQNALRRTM 179 (248)
Q Consensus 132 ~~~~~~~~------~--------~~~~~~~~~~~----------~-~~~~~vlilDEi~~l~~-------~~~~~L~~~l 179 (248)
.....+.. . ........... . ....-+|+|||++.+.. +....|..++
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 11111000 0 00000000000 0 00146899999999753 5556666666
Q ss_pred hhcCCceEEEEEeCCCcc---------cChHHHHhhh-heeeeccCCccccchHHHHHHHHHHhhcCccc
Q 025762 180 ETYSKVTRFFFICNYISR---------CTFSALFSFL-LFFMFFSLLDQISFDKEYIRIIYASTLKFLEG 239 (248)
Q Consensus 180 ~~~~~~~~ii~~~n~~~~---------~~~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (248)
+.. .+..+|+++..... .. ..+..|. ..+.+.|++.++. .+.+...+...+...
T Consensus 160 ~~~-~~~~~il~g~~~~~l~~~l~~~~~~-~~l~~~~~~~i~l~pl~~~e~----~~~l~~~~~~~~~~~ 223 (350)
T 2qen_A 160 DSL-PNLKIILTGSEVGLLHDFLKITDYE-SPLYGRIAGEVLVKPFDKDTS----VEFLKRGFREVNLDV 223 (350)
T ss_dssp HHC-TTEEEEEEESSHHHHHHHHCTTCTT-STTTTCCCEEEECCCCCHHHH----HHHHHHHHHTTTCCC
T ss_pred Hhc-CCeEEEEECCcHHHHHHHHhhcCCC-CccccCccceeeCCCCCHHHH----HHHHHHHHHHcCCCC
Confidence 554 46677888764321 11 2233344 3799999999999 877777665555443
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.20 E-value=4.5e-11 Score=101.79 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=81.5
Q ss_pred CccchhhccCCCcccccc-ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCc
Q 025762 47 SSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (248)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~-g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
...||..+|+|..|+.+- +|..++..+..++..+.+ +++|+|++|||||+++.+++..+...+. ..+..+... ..
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T-~~ 85 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPT-HA 85 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESS-HH
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCc-HH
Confidence 456899999999999876 788888888888776654 8999999999999999999998854432 122222222 22
Q ss_pred chHHHHHHHH-------HhHhhhhcCC-----C-CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe
Q 025762 126 GINVVRTKIK-------TFAAVAVGSG-----Q-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (248)
Q Consensus 126 ~~~~~~~~~~-------~~~~~~~~~~-----~-~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~ 192 (248)
....+..... .+........ . ........++++++|||++.++...+..|+..+. ....+++++
T Consensus 86 Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vG 162 (459)
T 3upu_A 86 AKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEE
T ss_pred HHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEEC
Confidence 2222222110 0000000000 0 0111223457899999999999998888887774 456688888
Q ss_pred CC
Q 025762 193 NY 194 (248)
Q Consensus 193 n~ 194 (248)
..
T Consensus 163 D~ 164 (459)
T 3upu_A 163 DN 164 (459)
T ss_dssp CT
T ss_pred CH
Confidence 54
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.19 E-value=4e-11 Score=93.59 Aligned_cols=134 Identities=18% Similarity=0.134 Sum_probs=83.0
Q ss_pred HHHHHHHHcC-C-CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCC
Q 025762 71 RVLTNTLETA-N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (248)
Q Consensus 71 ~~l~~~l~~~-~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (248)
..+..++... . ..+++|+||||||||+++.++++.+... -.++..+. .+...
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~-------G~vn~~~~-----------~f~l~-------- 144 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY-------GCVNWTNE-----------NFPFN-------- 144 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE-------EECCTTCS-----------SCTTG--------
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc-------ceeecccc-----------ccccc--------
Confidence 4566666554 2 3469999999999999999999975111 11111110 00000
Q ss_pred CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh--------hcC-----CceEEEEEeCCC-----------cccChHHHH
Q 025762 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTME--------TYS-----KVTRFFFICNYI-----------SRCTFSALF 204 (248)
Q Consensus 149 ~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~--------~~~-----~~~~ii~~~n~~-----------~~~~~~~l~ 204 (248)
....+.+++.||..... +..+.+..+++ ... ....+|++||.. .... +.|.
T Consensus 145 ---~~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~-~~L~ 219 (267)
T 1u0j_A 145 ---DCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQ-QPLQ 219 (267)
T ss_dssp ---GGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTH-HHHH
T ss_pred ---cccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhh-HHHh
Confidence 01122466666666554 45566777776 222 445689999861 1344 8899
Q ss_pred hhhheeeec--------cCCccccchHHHHHHHHHHhhcCcccc
Q 025762 205 SFLLFFMFF--------SLLDQISFDKEYIRIIYASTLKFLEGF 240 (248)
Q Consensus 205 ~r~~~i~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (248)
+|+..|.|. +++.+++ ...+.-. ..+..+..
T Consensus 220 sR~~~f~F~~~~p~~~~~lt~~~~----~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 220 DRMFKFELTRRLDHDFGKVTKQEV----KDFFRWA-KDHVVEVE 258 (267)
T ss_dssp TTEEEEECCSCCCTTSCCCCHHHH----HHHHHHH-HHTCCCCC
T ss_pred hhEEEEECCCcCCcccCCCCHHHH----HHHHHHH-HHcCCCCc
Confidence 999999998 7888888 8888744 66665543
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=3.3e-10 Score=92.94 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=95.0
Q ss_pred ccccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-----cc-hHHHHH
Q 025762 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RG-INVVRT 132 (248)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~ 132 (248)
....++|++...+.|.. +.. +.++|+||+|+|||++++.+++.+.. ..+.+++... .. ...+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL------PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC------CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC------CEEEEEchhhccccCCCHHHHHHH
Confidence 44567899999999988 654 58999999999999999999998721 2333443321 11 111111
Q ss_pred HHHHhHhh----------hhc------CC--CC-------CCCC--------CCC-CceEEEEeCCCCCCH----HHHHH
Q 025762 133 KIKTFAAV----------AVG------SG--QR-------RGGY--------PCP-PYKIIILDEADSMTE----DAQNA 174 (248)
Q Consensus 133 ~~~~~~~~----------~~~------~~--~~-------~~~~--------~~~-~~~vlilDEi~~l~~----~~~~~ 174 (248)
....+... ... .. .. .... ... +.-+|+|||++.+.. +....
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 11111000 000 00 00 0000 001 246899999999753 34455
Q ss_pred HHHHHhhcCCceEEEEEeCCCcccC--------hHHHHhhh-heeeeccCCccccchHHHHHHHHHHhhcCcc
Q 025762 175 LRRTMETYSKVTRFFFICNYISRCT--------FSALFSFL-LFFMFFSLLDQISFDKEYIRIIYASTLKFLE 238 (248)
Q Consensus 175 L~~~l~~~~~~~~ii~~~n~~~~~~--------~~~l~~r~-~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (248)
|..+.+.. .+..+|++++....+. ...+..|. ..+.+.|++.++. .+.+...+...+..
T Consensus 161 l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~----~~~l~~~~~~~~~~ 228 (357)
T 2fna_A 161 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEA----IEFLRRGFQEADID 228 (357)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHH----HHHHHHHHHHHTCC
T ss_pred HHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHH----HHHHHHHHHHcCCC
Confidence 55555543 4567888887532111 02234454 5799999999999 77777665544443
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.06 E-value=4.4e-09 Score=104.33 Aligned_cols=130 Identities=22% Similarity=0.205 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCC
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
+.....+..++.... .+++.||+|||||.+++.+|+.+ +..++.+++.+......+...+......
T Consensus 632 dr~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~~~lg~~~~g~~~~------ 697 (2695)
T 4akg_A 632 LIGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDYQVLSRLLVGITQI------ 697 (2695)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCChhHhhHHHHHHHhc------
Confidence 344455566665554 78999999999999999999999 7788999999887776665555443322
Q ss_pred CCCCCCCCCceEEEEeCCCCCCHHHHHHH-------HHHHhhcC-------------CceEEEEEeCC----CcccChHH
Q 025762 147 RRGGYPCPPYKIIILDEADSMTEDAQNAL-------RRTMETYS-------------KVTRFFFICNY----ISRCTFSA 202 (248)
Q Consensus 147 ~~~~~~~~~~~vlilDEi~~l~~~~~~~L-------~~~l~~~~-------------~~~~ii~~~n~----~~~~~~~~ 202 (248)
+..+++||++++++++++.+ ...+.+.. +...+++|.|+ ...++ ++
T Consensus 698 ---------Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP-~~ 767 (2695)
T 4akg_A 698 ---------GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELP-EN 767 (2695)
T ss_dssp ---------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCC-HH
T ss_pred ---------CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCccccc-HH
Confidence 24899999999999988877 33333222 34457777784 45688 99
Q ss_pred HHhhhheeeeccCCcccc
Q 025762 203 LFSFLLFFMFFSLLDQIS 220 (248)
Q Consensus 203 l~~r~~~i~~~~~~~~~~ 220 (248)
+.+||..+.+..|+.+.+
T Consensus 768 Lk~~Fr~v~m~~Pd~~~i 785 (2695)
T 4akg_A 768 LKKSFREFSMKSPQSGTI 785 (2695)
T ss_dssp HHTTEEEEECCCCCHHHH
T ss_pred HHhheEEEEeeCCCHHHH
Confidence 999999999999888777
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.01 E-value=1.4e-09 Score=108.61 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=91.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcC--CCCCCCCCCCCceEE
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKII 159 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vl 159 (248)
+.+++|+||||||||.++..+...+. ...++.++.+.......+...+.......... +...+....+++.|+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~-----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFP-----DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCT-----TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCC-----CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 34899999999999988866554431 23567788887766655555443221100000 111111112456799
Q ss_pred EEeCCCCCCH------HHHHHHHHHHhhcC------------CceEEEEEeCCC-----cccChHHHHhhhheeeeccCC
Q 025762 160 ILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRCTFSALFSFLLFFMFFSLL 216 (248)
Q Consensus 160 ilDEi~~l~~------~~~~~L~~~l~~~~------------~~~~ii~~~n~~-----~~~~~~~l~~r~~~i~~~~~~ 216 (248)
||||++.-.. ...+.|..+++.+. ....+|.++|++ ..++ +++.+||.++.+..|+
T Consensus 1379 FiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~-~Rf~r~F~vi~i~~ps 1457 (3245)
T 3vkg_A 1379 FCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLT-HRFLRHAPILLVDFPS 1457 (3245)
T ss_dssp EETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCC-HHHHTTCCEEECCCCC
T ss_pred EecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCC-HHHHhhceEEEeCCCC
Confidence 9999987653 36778888887432 234577888876 4577 9999999999999999
Q ss_pred ccccchHHHHHHHHH
Q 025762 217 DQISFDKEYIRIIYA 231 (248)
Q Consensus 217 ~~~~~~~~~~~l~~~ 231 (248)
.+++ ..+...+
T Consensus 1458 ~esL----~~If~ti 1468 (3245)
T 3vkg_A 1458 TSSL----TQIYGTF 1468 (3245)
T ss_dssp HHHH----HHHHHHH
T ss_pred HHHH----HHHHHHH
Confidence 9999 5554433
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.95 E-value=8.3e-09 Score=76.40 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=44.7
Q ss_pred ceEEEEeCCC---CCCHHHHHHHHHHHhhcCCceEEEEEe--CCCcccChHHHHhh--hheeeeccCCcccc
Q 025762 156 YKIIILDEAD---SMTEDAQNALRRTMETYSKVTRFFFIC--NYISRCTFSALFSF--LLFFMFFSLLDQIS 220 (248)
Q Consensus 156 ~~vlilDEi~---~l~~~~~~~L~~~l~~~~~~~~ii~~~--n~~~~~~~~~l~~r--~~~i~~~~~~~~~~ 220 (248)
.+++++||++ .+++...+.+.+.++.. ...+|+++ +....+. +.+.+| +.++.+.+.+.+++
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~-~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLV-KEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHH-HHHHTCTTCEEEECCTTTTTTH
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHH-HHHHhcCCcEEEEecCcCHHHH
Confidence 3699999964 34677888899999873 33356666 3344455 777787 66888888888887
No 101
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.82 E-value=9.9e-09 Score=77.22 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=40.6
Q ss_pred ceEEEEeCCCCC--CH-H---HHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhh-eeeecc
Q 025762 156 YKIIILDEADSM--TE-D---AQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLL-FFMFFS 214 (248)
Q Consensus 156 ~~vlilDEi~~l--~~-~---~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~-~i~~~~ 214 (248)
..||||||++.+ +. + ....|..+...++....+|+++++...+. .++++|+. .+.+.+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~-~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLD-QNLRTLVRKHYHIAS 152 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBC-HHHHTTEEEEEEEEE
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHh-HHHHHHhheEEEEcC
Confidence 569999999998 21 1 11223333344455567899999998998 99999987 466766
No 102
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.81 E-value=1.2e-08 Score=75.84 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC-CcchHHHHHHHH-------------------HhHhhh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINVVRTKIK-------------------TFAAVA 141 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------------~~~~~~ 141 (248)
...|++++++|.||||+|-+++..+.+.+. ...++.+.... ..+...+...+. ......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 347999999999999999999999854433 33333332221 111111111100 000000
Q ss_pred hcCCCCCCCCCCCCceEEEEeCC------CCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhhhhe
Q 025762 142 VGSGQRRGGYPCPPYKIIILDEA------DSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSFLLF 209 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~~vlilDEi------~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r~~~ 209 (248)
..+..........++++|||||+ +.++.+ .+++++..+++...+|+|+|... ++|....+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~Rp~~~~vIlTGr~ap----~~l~e~AD~ 173 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNARPGHQTVIITGRGCH----RDILDLADT 173 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTSCTTCEEEEECSSCC----HHHHHHCSE
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhCcCCCEEEEECCCCc----HHHHHhCcc
Confidence 00000111122356799999998 455543 58888899999999999999753 667776553
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.76 E-value=2.3e-07 Score=93.05 Aligned_cols=134 Identities=19% Similarity=0.171 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCC
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
+.....|..++.... ...+.||+|||||.+++.+|+.+ +..++.++|.+......+...+......
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~~~~g~i~~G~~~~------ 656 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDLQAMSRIFVGLCQC------ 656 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCHHHHHHHHhhHhhc------
Confidence 444455666665555 56799999999999999999999 6788889999887776665555544321
Q ss_pred CCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh-------h---------c-----CCceEEEEEeCC----CcccChH
Q 025762 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-------T---------Y-----SKVTRFFFICNY----ISRCTFS 201 (248)
Q Consensus 147 ~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~-------~---------~-----~~~~~ii~~~n~----~~~~~~~ 201 (248)
+...++||+++++.++...+...+. . + .+.+.+++|.|+ ...++ +
T Consensus 657 ---------GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP-~ 726 (3245)
T 3vkg_A 657 ---------GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLP-D 726 (3245)
T ss_dssp ---------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSC-H
T ss_pred ---------CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccCh-H
Confidence 2478999999999998888766554 1 1 134557777785 35688 9
Q ss_pred HHHhhhheeeeccCCccccchHHHHHH
Q 025762 202 ALFSFLLFFMFFSLLDQISFDKEYIRI 228 (248)
Q Consensus 202 ~l~~r~~~i~~~~~~~~~~~~~~~~~l 228 (248)
.+.++|..+.+..|+.+.+ .+++
T Consensus 727 nLk~lFr~v~m~~Pd~~~i----~ei~ 749 (3245)
T 3vkg_A 727 NLKKLFRSMAMIKPDREMI----AQVM 749 (3245)
T ss_dssp HHHTTEEEEECCSCCHHHH----HHHH
T ss_pred HHHhhcEEEEEeCCCHHHH----HHHH
Confidence 9999999999999988877 5554
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.75 E-value=4.7e-09 Score=78.16 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=61.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC-CCc-chHHHHHHHHH-hHhhhhcCCCCCCCCCCCCceEE
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDR-GINVVRTKIKT-FAAVAVGSGQRRGGYPCPPYKII 159 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vl 159 (248)
.-++++||+|+|||+++..+++.+...+. .+..+.+. +.+ +...+...... ..................+.+++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~---~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvv 80 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKK---KVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGV 80 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTC---EEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEE
Confidence 35889999999999999877776633222 12212111 000 00000000000 00000000000000001246899
Q ss_pred EEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC------CCcccChHHHHhhhh
Q 025762 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------YISRCTFSALFSFLL 208 (248)
Q Consensus 160 ilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n------~~~~~~~~~l~~r~~ 208 (248)
+|||++.++++....|..+.+. ...+++++. +++... +.++++..
T Consensus 81 iIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~-~~ll~~ad 131 (184)
T 2orw_A 81 FIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETT-ALLLSLAD 131 (184)
T ss_dssp EECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHH-HHHHHHCS
T ss_pred EEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccch-HHHHHHhh
Confidence 9999999987788877777765 344666653 344555 77887765
No 105
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.67 E-value=1.2e-07 Score=82.62 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHH-------HhH
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK-------TFA 138 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 138 (248)
.+.+...+...+ ....++|+||||||||+++.+++..+...+ ..+..+.+ .......+.+... .+.
T Consensus 191 ~~~Q~~Av~~~~---~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~Ap-T~~Aa~~L~e~~~~~a~Tih~ll 263 (574)
T 3e1s_A 191 SEEQASVLDQLA---GHRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAP-TGKAARRLGEVTGRTASTVHRLL 263 (574)
T ss_dssp CHHHHHHHHHHT---TCSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEES-SHHHHHHHHHHHTSCEEEHHHHT
T ss_pred CHHHHHHHHHHH---hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecC-cHHHHHHhHhhhcccHHHHHHHH
Confidence 455555555444 235899999999999999999998874332 23333322 2222222222110 000
Q ss_pred hhhhcCCCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
.... ...........+.+++||||+..++......|+..+ +...++|+++...
T Consensus 264 ~~~~-~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~ 316 (574)
T 3e1s_A 264 GYGP-QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTD 316 (574)
T ss_dssp TEET-TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTT
T ss_pred cCCc-chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEeccc
Confidence 0000 011111112235689999999999988777776554 3567788888643
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.64 E-value=1.8e-07 Score=82.07 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=40.1
Q ss_pred CCccccccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
|.....++|.+..+..|..++.. +..+.+.|+|++|+|||+||..+++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 44556789999999999999874 33456999999999999999998753
No 107
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.61 E-value=5.1e-07 Score=78.50 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=82.2
Q ss_pred cccHHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHH---hcCCCccccceEEeccCCCc---chHHHHHHH
Q 025762 64 AHQEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQ---LFGPELYKSRVLELNASDDR---GINVVRTKI 134 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 134 (248)
+|.+..++.|..++... ....+.|+|+.|+|||+||..+++. -....+ .. .+.++.+... ........+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~~-~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-DS-IVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-SE-EEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-Cc-EEEEEECCCCCCCHHHHHHHHH
Confidence 49999999999888654 3456999999999999999999972 212222 22 2233333321 222223333
Q ss_pred HHhHhhhh--cCCCCCCC-----------CCCCC-ceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccCh
Q 025762 135 KTFAAVAV--GSGQRRGG-----------YPCPP-YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTF 200 (248)
Q Consensus 135 ~~~~~~~~--~~~~~~~~-----------~~~~~-~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~ 200 (248)
..+..... ........ ....+ +-+|||||++... .. .+. .. ..++||+||.......
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~-~~~----~~-~gs~ilvTTR~~~v~~- 279 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI-RWA----QE-LRLRCLVTTRDVEISN- 279 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH-HHH----HH-TTCEEEEEESBGGGGG-
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh-ccc----cc-CCCEEEEEcCCHHHHH-
Confidence 22221100 00000000 01233 6799999999842 21 121 11 5667888887532211
Q ss_pred HHHHhhhheeeeccCCccccchHHHHHHHHH
Q 025762 201 SALFSFLLFFMFFSLLDQISFDKEYIRIIYA 231 (248)
Q Consensus 201 ~~l~~r~~~i~~~~~~~~~~~~~~~~~l~~~ 231 (248)
........+.+.+++.++. ...+...
T Consensus 280 -~~~~~~~~~~l~~L~~~ea----~~Lf~~~ 305 (549)
T 2a5y_B 280 -AASQTCEFIEVTSLEIDEC----YDFLEAY 305 (549)
T ss_dssp -GCCSCEEEEECCCCCHHHH----HHHHHHT
T ss_pred -HcCCCCeEEECCCCCHHHH----HHHHHHH
Confidence 1100113578888888887 6666555
No 108
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.56 E-value=3e-07 Score=73.61 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
..++|+||||+|||++|.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35899999999999999999987
No 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.54 E-value=7.8e-07 Score=81.39 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 64 AHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~-~~~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+|++..+..|.+++.. ...+.+.|+|+.|+|||+||..+++.
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 8999999999988876 34557999999999999999999864
No 110
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.51 E-value=6.3e-07 Score=78.76 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCC-CccccceEEeccCCCcchHHHHHHHHHhHhhhh-----------cCC----
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-----------GSG---- 145 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---- 145 (248)
...++++|+||||||+++..+...+... ......+..+.++. .....+.+.+........ ...
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg-~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ 242 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG-KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSH-HHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTS
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCCh-hHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHh
Confidence 3479999999999999999888776311 01122333333322 222222222221111000 000
Q ss_pred ----------CCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 146 ----------QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 146 ----------~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
.........+.++|||||++.++......|+..+ +....+|+.+..
T Consensus 243 ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~ 298 (608)
T 1w36_D 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDR 298 (608)
T ss_dssp CC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECT
T ss_pred hhccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcch
Confidence 0000011125679999999999877666665544 556788998864
No 111
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.50 E-value=7.7e-07 Score=67.65 Aligned_cols=135 Identities=10% Similarity=0.093 Sum_probs=73.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhh---h-cCCC--CCCCC---CC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA---V-GSGQ--RRGGY---PC 153 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--~~~~~---~~ 153 (248)
.++++.|++||||||++..++..+... ++...+..+++....... .....+.... . ..+. ..... ..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~~~~~~---al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHGRAETE---ALLNGLPQQPLLRTEYRGMTLEEMDLDALLK 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTTCHHHH---HHHTTSCBCCCEEEEETTEEEEECCHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCCChhHH---HHhcCccccCcceeecCCcccccccHHHHHh
Confidence 369999999999999999999998543 333334444442221111 1111111000 0 0000 00000 01
Q ss_pred CCceEEEEeCCCCCCHH------HHHHHHHHHhhcCCceEEEEEeCC------------------CcccChHHHHhhhhe
Q 025762 154 PPYKIIILDEADSMTED------AQNALRRTMETYSKVTRFFFICNY------------------ISRCTFSALFSFLLF 209 (248)
Q Consensus 154 ~~~~vlilDEi~~l~~~------~~~~L~~~l~~~~~~~~ii~~~n~------------------~~~~~~~~l~~r~~~ 209 (248)
.++++++|||+.+.+.. ..+.+...+ .....++.++|- ...++ +.+..++..
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l---~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp-d~~~~~a~~ 158 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELL---AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP-DWVLQEAFD 158 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH---HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC-HHHHHTCSE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHH---cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCc-cHHHhhCCe
Confidence 23579999998876311 233333332 334457777761 24466 777788877
Q ss_pred eeeccCCccccchHHHHHHH
Q 025762 210 FMFFSLLDQISFDKEYIRII 229 (248)
Q Consensus 210 i~~~~~~~~~~~~~~~~~l~ 229 (248)
+.+-..+++++ +.++.
T Consensus 159 v~lvD~~p~~l----~~rl~ 174 (228)
T 2r8r_A 159 LVLIDLPPREL----LERLR 174 (228)
T ss_dssp EEEBCCCHHHH----HHHHH
T ss_pred EEEecCCHHHH----HHHHH
Confidence 87877777777 66643
No 112
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.39 E-value=2.4e-06 Score=80.90 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=40.0
Q ss_pred CCccccccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 57 PKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
|.....++|++..++.|...+... ....+.|+|+.|+|||+||..+++.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 445567899999999999998643 3445889999999999999988765
No 113
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.32 E-value=4.7e-07 Score=67.49 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=41.9
Q ss_pred CCCceEEEEeCCCCC---CHHHHHHHHHHHhhcCCceEEEE-Ee--CCC-cccChHHHHhh--hheeeeccCCccccchH
Q 025762 153 CPPYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFF-IC--NYI-SRCTFSALFSF--LLFFMFFSLLDQISFDK 223 (248)
Q Consensus 153 ~~~~~vlilDEi~~l---~~~~~~~L~~~l~~~~~~~~ii~-~~--n~~-~~~~~~~l~~r--~~~i~~~~~~~~~~~~~ 223 (248)
..+.++++|||++.+ +...++.|.++++.+.. .++. ++ -+. ..+. +.+..+ +.++.+..-+.+.+..+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~--~ilgti~vsh~~~~~~v-d~i~~~~~~~i~~~~~~nr~~~~~~ 179 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGT--IILGTIPVPKGKPLALV-EEIRNRKDVKVFNVTKENRNHLLPD 179 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSC--CEEEECCCCCSSCCTTH-HHHHTTCCSEEEECCSSSGGGHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCc--EEEEEeecCCCCchHHH-HHHeecCCcEEEEeChHhHHHHHHH
Confidence 345689999997766 45678888888876432 2221 22 111 1333 556554 35688877777777333
Q ss_pred HH
Q 025762 224 EY 225 (248)
Q Consensus 224 ~~ 225 (248)
+.
T Consensus 180 i~ 181 (189)
T 2i3b_A 180 IV 181 (189)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 114
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.31 E-value=1.4e-06 Score=84.51 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
..+.+++|+||||||||+||.+++.++...
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 356689999999999999999999988443
No 115
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.30 E-value=3.4e-06 Score=64.38 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCC-cch----------------HHHHHHHHHhHhhhhcC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-RGI----------------NVVRTKIKTFAAVAVGS 144 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~ 144 (248)
+.-++++||+|+||||++..++..+...+. .+..+.+... .+. ....+....+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~----- 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMS----- 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHS-----
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHH-----
Confidence 346899999999999999999888743322 1222211110 000 000011100000
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 145 ~~~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
.....+.++++|||++.++.++...+..+.+. ...+|+++-
T Consensus 84 -----~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 84 -----NSFNDETKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGL 124 (223)
T ss_dssp -----TTSCTTCCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECC
T ss_pred -----HhhCCCCCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEec
Confidence 01112357999999999988877766554443 455777774
No 116
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.26 E-value=4.3e-06 Score=64.65 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+.+.+..++.. .+++++||+|+|||.++..++..+
T Consensus 96 ~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 96 DYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3444444443332 369999999999999999988876
No 117
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.21 E-value=2.8e-06 Score=64.08 Aligned_cols=118 Identities=12% Similarity=0.034 Sum_probs=59.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCC-Cc-chHHHHHHHHH-hHhhhhcCCCCCCCCCCCCceEEE
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DR-GINVVRTKIKT-FAAVAVGSGQRRGGYPCPPYKIII 160 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vli 160 (248)
-.+++||.|+|||+.+..++..+...+. .++.+.+.- .+ +...+...+.. ..................++++++
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvVi 106 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIA 106 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEE
Confidence 4679999999999999999888743332 333333321 11 11111111110 000000000000000112478999
Q ss_pred EeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC------CCcccChHHHHhhhh
Q 025762 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICN------YISRCTFSALFSFLL 208 (248)
Q Consensus 161 lDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n------~~~~~~~~~l~~r~~ 208 (248)
|||++.++++..+.+..+.+. ...+|+++- .++... +.|.....
T Consensus 107 IDEaQF~~~~~V~~l~~l~~~---~~~Vi~~Gl~~DF~~~~F~~~-~~Ll~~AD 156 (214)
T 2j9r_A 107 IDEVQFFDGDIVEVVQVLANR---GYRVIVAGLDQDFRGLPFGQV-PQLMAIAE 156 (214)
T ss_dssp ECCGGGSCTTHHHHHHHHHHT---TCEEEEEECSBCTTSCBCTTH-HHHHHHCS
T ss_pred EECcccCCHHHHHHHHHHhhC---CCEEEEEecccccccCccccH-HHHHHhcc
Confidence 999999988877655554432 445777773 233343 55555443
No 118
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.11 E-value=2.8e-05 Score=59.92 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~ 104 (248)
.++++.||+|+|||++...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4899999999999987665543
No 119
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.03 E-value=0.00015 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+|+|+||||+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 120
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.03 E-value=1.2e-06 Score=65.39 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=52.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC-CCcc-hHHHHHHHH-HhHhhhhcCCCCCCCCCCCCceEE
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRG-INVVRTKIK-TFAAVAVGSGQRRGGYPCPPYKII 159 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl 159 (248)
.-.+++||.|+|||+.+..+++.+...+. .+..+.+. +.+. ...+..... ...................+++++
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvV 85 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVI 85 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEE
Confidence 35899999999999999999888743322 22222211 0000 000000000 000000000000000001236899
Q ss_pred EEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 160 ilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
+|||++.++++..+.+..+.+. ...+|+++-
T Consensus 86 iIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~Gl 116 (191)
T 1xx6_A 86 AIDEVQFFDDEIVEIVNKIAES---GRRVICAGL 116 (191)
T ss_dssp EECSGGGSCTHHHHHHHHHHHT---TCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHhC---CCEEEEEec
Confidence 9999999987777766555443 345777763
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.02 E-value=3.6e-05 Score=64.48 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
..++++||+|+||||++..++..+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999998843
No 122
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.02 E-value=7.1e-05 Score=62.71 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=55.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEE
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlil 161 (248)
+.-|+|+|+||+||||+++.++..+ .+..++.........+......... . ...+|+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~--------~~~~i~~D~~~~~~~~~~~~~~~l~---~------------g~~vIi 314 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA--------GYVHVNRDTLGSWQRCVSSCQAALR---Q------------GKRVVI 314 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG--------TCEECCGGGSCSHHHHHHHHHHHHH---T------------TCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc--------CcEEEccchHHHHHHHHHHHHHHHh---c------------CCcEEE
Confidence 3459999999999999999999876 2233333333333222222222111 1 124678
Q ss_pred eCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChHHHHhh
Q 025762 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFSALFSF 206 (248)
Q Consensus 162 DEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~~l~~r 206 (248)
|.... .......+..++........+|+...+...+. ..+..|
T Consensus 315 D~~~~-~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~-~R~~~R 357 (416)
T 3zvl_A 315 DNTNP-DVPSRARYIQCAKDAGVPCRCFNFCATIEQAR-HNNRFR 357 (416)
T ss_dssp ESCCC-SHHHHHHHHHHHHHHTCCEEEEEECCCHHHHH-HHHHHH
T ss_pred eCCCC-CHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHH-HHHHhh
Confidence 87654 45566667777766554555555543333333 444444
No 123
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.99 E-value=5.6e-05 Score=57.27 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+|+||||+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 124
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.99 E-value=0.00014 Score=55.10 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhhcCCceEEEEEe-CCCcc
Q 025762 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFIC-NYISR 197 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~--~~~~~~L~~~l~~~~~~~~ii~~~-n~~~~ 197 (248)
....+++|+||+|.+. ......+..++...+....+++.| +.+..
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTT
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHH
Confidence 3456899999999873 355556666666655555555554 44333
No 125
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.98 E-value=1.5e-05 Score=77.56 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchH---------------------HHHHHHHHhHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN---------------------VVRTKIKTFAA 139 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 139 (248)
.+.+++++||||||||++|.+++.+....+ . .+..++.......- ........+..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~G-e--~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-K--TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT-C--CEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC-C--eEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 556899999999999999999999884442 2 23333333221110 01111111111
Q ss_pred hhhcCCCCCCCCCCCCceEEEEeCCCCCCHH------------------HHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTED------------------AQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vlilDEi~~l~~~------------------~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
....+++|||++..+.+. ....|+++....++...+++++|..
T Consensus 1157 -------------~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1157 -------------SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1217 (2050)
T ss_dssp -------------HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred -------------hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 112479999999988421 2245777787777666677777654
No 126
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.95 E-value=6.2e-05 Score=63.12 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
+..++++|++|+||||++..++..+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 3458999999999999999999988543
No 127
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.93 E-value=7.6e-05 Score=54.65 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.++|.|+||+||||+++.++..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 5899999999999999999983
No 128
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.92 E-value=9.3e-05 Score=57.91 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..|+|+|+||+||||+++.++..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999999985
No 129
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.90 E-value=9.6e-06 Score=59.95 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+++|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999998
No 130
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.88 E-value=6.4e-05 Score=57.21 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=24.9
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhcCCceEEEE-EeCCCc
Q 025762 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFF-ICNYIS 196 (248)
Q Consensus 154 ~~~~vlilDEi~~l~~~-~~~~L~~~l~~~~~~~~ii~-~~n~~~ 196 (248)
.+.+++|+||+|.+... ....+..++...+....+++ +++.+.
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 44679999999987432 23345555555544554444 444443
No 131
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.87 E-value=6.2e-05 Score=56.76 Aligned_cols=23 Identities=43% Similarity=0.793 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+|.||||+||+|.|+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998
No 132
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.87 E-value=1.4e-05 Score=58.58 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++|+|+||+||||+++.++..+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999999997
No 133
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.87 E-value=0.00026 Score=56.48 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+||+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355799999999999999999999884
No 134
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.86 E-value=2.5e-05 Score=59.46 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=51.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC-CCcchHHHHHHHHHhHhhhhcCCCCCCCCCCCCceEEEE
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlil 161 (248)
.-.+++|+.|+|||+.+-..++.+...+. .++.+.+. +.+....+........................+.++++|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEE
Confidence 35889999999999888888777644432 22222221 111111111111100000000000000000134689999
Q ss_pred eCCCCCCHHHHHHHHHHHhhcCCceEEEEEeC
Q 025762 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 162 DEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
||+..+.. ...+.+.+.+ ....+|+++-
T Consensus 97 DEaQF~~~--v~el~~~l~~--~gi~VI~~GL 124 (234)
T 2orv_A 97 DEGQFFPD--IVEFCEAMAN--AGKTVIVAAL 124 (234)
T ss_dssp SSGGGCTT--HHHHHHHHHH--TTCEEEEECC
T ss_pred Echhhhhh--HHHHHHHHHh--CCCEEEEEec
Confidence 99999974 6666677776 3445777774
No 135
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.85 E-value=1.9e-05 Score=59.62 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||.++...+...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999998877654
No 136
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.85 E-value=8.8e-05 Score=55.61 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIA 103 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la 103 (248)
.++++.+|+|+|||..+...+
T Consensus 41 ~~~lv~apTGsGKT~~~~~~~ 61 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLIPL 61 (206)
T ss_dssp CCEEEECCSSSTTHHHHHHHH
T ss_pred CCEEEECCCCCchHHHHHHHH
Confidence 489999999999997655433
No 137
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.84 E-value=6.7e-05 Score=65.73 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.|..++..+...+..+ ..++++++|+|+|||..+-.++..+.
T Consensus 182 ~Q~~ai~~~~~~~~~~-~~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 182 YQQIAINRAVQSVLQG-KKRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHHTT-CSEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCceEEEecCCCChHHHHHHHHHHHH
Confidence 3455555555555443 24789999999999999988887763
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=1.6e-05 Score=59.66 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|+|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45589999999999999999999998
No 139
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.81 E-value=0.00014 Score=59.53 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++|+||+|+||||++++++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3389999999999999999998877
No 140
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.81 E-value=0.00012 Score=60.42 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=21.1
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+...++++.+|+|+|||..+...+...
T Consensus 41 ~~~~~~~lv~a~TGsGKT~~~~~~~~~~ 68 (395)
T 3pey_A 41 HNPPRNMIAQSQSGTGKTAAFSLTMLTR 68 (395)
T ss_dssp CSSCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3444689999999999998776555443
No 141
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.81 E-value=0.00078 Score=58.16 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=45.8
Q ss_pred CceEEEEeCCCCC----CHHHHHHHHHHHhhcCC-ceEEEEEeCCCc--ccChHHHHhhhh-eeeeccCCcccc
Q 025762 155 PYKIIILDEADSM----TEDAQNALRRTMETYSK-VTRFFFICNYIS--RCTFSALFSFLL-FFMFFSLLDQIS 220 (248)
Q Consensus 155 ~~~vlilDEi~~l----~~~~~~~L~~~l~~~~~-~~~ii~~~n~~~--~~~~~~l~~r~~-~i~~~~~~~~~~ 220 (248)
++-++||||++.+ +.+....|.+++..... ...+|++|+.+. .+. ..+++-+. .+.|.-.+..+.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~-~~Iran~~~RI~lrv~s~~Ds 415 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVIT-GLIKANIPTRIAFQVSSKIDS 415 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSC-HHHHHTCCEEEEECCSCHHHH
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCccccccc-HHHHhhhccEEEEEcCCHHHH
Confidence 3458999999876 44556667777766554 445788887765 676 77887776 578887777776
No 142
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.77 E-value=2e-05 Score=57.31 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++++|+|++|+||||+++.|+..+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999988
No 143
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.77 E-value=2.1e-05 Score=57.87 Aligned_cols=25 Identities=40% Similarity=0.681 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+|+|+|+||+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999987
No 144
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.77 E-value=2.1e-05 Score=57.19 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+|+|++|+||||+++.++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999998
No 145
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.76 E-value=2.1e-05 Score=58.34 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCcHH-HHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKT-TTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT-~la~~la~~~ 106 (248)
+.-.+++||.|+||| +|.+++.+..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 345899999999999 8888888775
No 146
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.76 E-value=0.00064 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..|+|+||||+||||+++.++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999999887
No 147
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.73 E-value=2.1e-05 Score=57.36 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+.|+||+|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.73 E-value=2.6e-05 Score=57.65 Aligned_cols=25 Identities=44% Similarity=0.611 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
.+.+++|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557999999999999999999998
No 149
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.72 E-value=0.0001 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
.++++.+|+|+|||..+...+-.
T Consensus 68 ~~~li~apTGsGKT~~~~l~~l~ 90 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAISILQ 90 (237)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999875444433
No 150
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.72 E-value=3.2e-05 Score=63.71 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..++|+||+|+||||+++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355579999999999999999999876
No 151
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.72 E-value=0.00015 Score=59.09 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||..+...+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 489999999999999877665554
No 152
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.72 E-value=0.0002 Score=53.68 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIA 103 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la 103 (248)
.++++.+|+|+|||..+...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~ 59 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPI 59 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 479999999999998754433
No 153
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.71 E-value=2.7e-05 Score=57.06 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+++|.|+||+||||+++.++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999988
No 154
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.69 E-value=3.1e-05 Score=57.12 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.|+|+|+||+||||+++.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 369999999999999999999987
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.69 E-value=0.00011 Score=60.09 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+||||+|||+++..++..+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445799999999999999999987763
No 156
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.68 E-value=0.00021 Score=58.37 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+||||+|||+|+..++..+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344699999999999999999998863
No 157
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.67 E-value=8.9e-05 Score=60.68 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+|+||+|||++|..++..+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445799999999999999999998763
No 158
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.67 E-value=0.00029 Score=55.64 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+.+.+..++.. .+.++.+|+|+|||.++..++...
T Consensus 116 ~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 116 WYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp HHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 3344444444444 357889999999999998887765
No 159
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.66 E-value=0.002 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999876
No 160
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.66 E-value=0.00016 Score=56.17 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALA 101 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~ 101 (248)
.++++.+|+|+|||..+..
T Consensus 81 ~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEEcCCCCCchhHhHH
Confidence 4899999999999987543
No 161
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.64 E-value=3.9e-05 Score=57.53 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=23.9
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...+..++|+||+|+||||+++.++..+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456689999999999999999999987
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.64 E-value=4.7e-05 Score=57.07 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=25.7
Q ss_pred HcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
....+..+.|.||+|+||||+++.++..+.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344566799999999999999999999884
No 163
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.64 E-value=5e-05 Score=57.15 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccC-CCc-chHHHHHHHHHhHh-hhhcCCCCCCCCCCCCceE
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDR-GINVVRTKIKTFAA-VAVGSGQRRGGYPCPPYKI 158 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v 158 (248)
+.-.+++||-|+|||+.+-..++.+...+ ..+..+.+. +.+ +...+......... ...............+.++
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dv 104 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDV 104 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCE
Confidence 34579999999999995554455553332 223333322 111 11111110000000 0000000000001235679
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEe
Q 025762 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (248)
Q Consensus 159 lilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~ 192 (248)
++|||++.+++++...+..+.+. ...+|+.+
T Consensus 105 V~IDEaQFf~~~~v~~l~~la~~---gi~Vi~~G 135 (219)
T 3e2i_A 105 IGIDEVQFFDDEIVSIVEKLSAD---GHRVIVAG 135 (219)
T ss_dssp EEECCGGGSCTHHHHHHHHHHHT---TCEEEEEE
T ss_pred EEEechhcCCHHHHHHHHHHHHC---CCEEEEee
Confidence 99999999999888888887732 33455555
No 164
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.64 E-value=4.1e-05 Score=59.69 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|+||||+||||+|+.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57999999999999999999987
No 165
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.64 E-value=5e-05 Score=61.69 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=27.6
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 72 ~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+...+..+...+++|.|++|+|||++++.++..+
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 33333444555679999999999999999999987
No 166
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.63 E-value=4e-05 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..++|+|+||+||||+++.++..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999874
No 167
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.62 E-value=0.00021 Score=64.57 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
..+..++..+. +++++||+|+|||+++..+...
T Consensus 100 ~~i~~~l~~~~--~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 100 DEFLKLYQNNQ--IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC--eEEEECCCCCCHHHHHHHHHHH
Confidence 34444444443 8999999999999977766544
No 168
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.61 E-value=0.00039 Score=57.09 Aligned_cols=27 Identities=44% Similarity=0.471 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+||||+|||+++..++..+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 345799999999999999999988763
No 169
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.61 E-value=0.00018 Score=57.55 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|+||+|+|||||++.++...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 355679999999999999999998876
No 170
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.60 E-value=0.00014 Score=70.18 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++++||||||||.+|.+++.+.
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHh
Confidence 3349999999999999999999876
No 171
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.60 E-value=0.00067 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||..+...+...
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~~~ 82 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTLEK 82 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHHHH
Confidence 479999999999998766555443
No 172
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.59 E-value=0.00024 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
.++++.+|+|+|||..+...+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~l~ 64 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPIME 64 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 47999999999999875544433
No 173
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=4.7e-05 Score=57.25 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|+||||+||||+++.++..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45579999999999999999999987
No 174
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.59 E-value=0.00015 Score=60.95 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..++|+|++|+||||++..++..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999873
No 175
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.59 E-value=5.1e-05 Score=57.75 Aligned_cols=26 Identities=35% Similarity=0.678 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..|+|.|+||+||||+++.++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999999988
No 176
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.58 E-value=6.4e-05 Score=56.73 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.1
Q ss_pred HHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 69 VVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 69 ~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..+.|...+.. ..+..+.|.||+|+|||||++.++..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44455444432 3455699999999999999999999873
No 177
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.58 E-value=4.6e-05 Score=55.46 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|+||||+||||+++.+ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5899999999999999999 665
No 178
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.58 E-value=5.6e-05 Score=56.20 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|+|+||+||||+++.++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999987
No 179
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.57 E-value=4e-05 Score=56.82 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.|+|.|+||+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999884
No 180
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.57 E-value=6.2e-05 Score=62.98 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=52.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcC-CC-------C-CCCCCCC
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQ-------R-RGGYPCP 154 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~-~~~~~~~ 154 (248)
-.++.|+||+|||+++..++.. .....+.+... ....+++.+.......... .. . .......
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT~~-aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~ 233 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF--------EEDLILVPGRQ-AAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARC 233 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT--------TTCEEEESCHH-HHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhcc--------CCeEEEeCCHH-HHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCC
Confidence 4799999999999999877642 12222222221 2222322221100000000 00 0 0011112
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 155 ~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
..+++||||+..++......++..+.. ..+|+.+..
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~----~~vilvGD~ 269 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLC----DIAYVYGDT 269 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTC----SEEEEEECT
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCC----CEEEEecCc
Confidence 368999999999999888877765432 568888853
No 181
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.57 E-value=4.2e-05 Score=56.74 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++|+|+||+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999999987
No 182
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.57 E-value=8.7e-05 Score=65.74 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
-++.+.+++..++.... -.+|+||||||||+++..+...+.
T Consensus 190 LN~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CCHHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHH
Confidence 35777788887776443 689999999999998887776663
No 183
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.57 E-value=6.1e-05 Score=56.47 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...++|+|++|+||||+++.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999987
No 184
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.56 E-value=0.00024 Score=61.04 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
..++++.+|+|+|||..+...+..
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~ 181 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLS 181 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHH
Confidence 468999999999999985544333
No 185
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.56 E-value=0.0004 Score=57.62 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=19.1
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHH
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIA 103 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la 103 (248)
.+.+.++++.+|+|+|||..+...+
T Consensus 61 ~~~~~~~lv~apTGsGKT~~~~~~~ 85 (412)
T 3fht_A 61 AEPPQNLIAQSQSGTGKTAAFVLAM 85 (412)
T ss_dssp SSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCeEEEECCCCchHHHHHHHHH
Confidence 3345689999999999998864433
No 186
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.56 E-value=5.7e-05 Score=55.02 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|+|+|++|+||||+++.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999987
No 187
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.55 E-value=7.5e-05 Score=55.92 Aligned_cols=25 Identities=44% Similarity=0.794 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..|+|+|+||+||||+++.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999987
No 188
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.55 E-value=6e-05 Score=55.52 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..+.|+||+|+||||+++.++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999999876
No 189
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.55 E-value=0.00079 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|.|+||+||||+++.++..+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999863
No 190
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.54 E-value=4.5e-05 Score=56.31 Aligned_cols=24 Identities=46% Similarity=0.866 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++|+|+||+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999887
No 191
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.52 E-value=4.7e-05 Score=56.47 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|+||+|+||||+++.++...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34579999999999999999998864
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.52 E-value=5.9e-05 Score=55.14 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++|+||+|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4469999999999999999999886
No 193
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.52 E-value=4.8e-05 Score=57.77 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|+|.||||+||+|.|+.|+..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998
No 194
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.52 E-value=6.6e-05 Score=57.20 Aligned_cols=26 Identities=23% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..|+|.|+||+||||+++.++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999998
No 195
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.51 E-value=3.9e-05 Score=60.97 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++|+||||+||||+++.++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999886
No 196
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.51 E-value=0.00095 Score=62.87 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=31.7
Q ss_pred ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...|..++..+...+..+.+.+++++||+|+|||.++...+..+
T Consensus 605 t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~ 648 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 648 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34566666666666656666689999999999998876555443
No 197
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.51 E-value=7.7e-05 Score=54.05 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+|+|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 198
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.51 E-value=0.00029 Score=67.99 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+.+++|+||||||||++|..++....
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~ 59 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQ 59 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455899999999999999999998763
No 199
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.51 E-value=0.00026 Score=58.22 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+|||||++.++...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 345579999999999999999999876
No 200
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.00043 Score=56.40 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=29.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCC---ccccceEEeccCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~---~~~~~~~~~~~~~ 123 (248)
+..++|+||||+|||+++..++.....+. +....++.++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44589999999999999999998853221 1233455555544
No 201
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.49 E-value=0.0005 Score=54.92 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=25.1
Q ss_pred CceEEEEeCCCCCCH--HHHHHHHHHHhhcCCceEEEEEe-CCCc
Q 025762 155 PYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFIC-NYIS 196 (248)
Q Consensus 155 ~~~vlilDEi~~l~~--~~~~~L~~~l~~~~~~~~ii~~~-n~~~ 196 (248)
+.++|||||+|.+.. .....+..++...+....+++.| +.+.
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 457999999998753 33444555555555555555444 4433
No 202
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.49 E-value=0.00038 Score=57.84 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhcCCceEEEEEeC
Q 025762 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 154 ~~~~vlilDEi~~l~~~-~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
...+++|+||+|.+... ....+..++........+++.|.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 222 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSA 222 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECS
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 34579999999986432 23445566666655666655553
No 203
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.49 E-value=8.8e-05 Score=57.00 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..|+|.|+||+||||+++.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999998
No 204
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.48 E-value=7e-05 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
..|+|.|+||+||||+++.++..+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 36899999999999999999998843
No 205
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.48 E-value=0.00071 Score=56.19 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||..+...+...
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~~~~ 98 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISVLQC 98 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCchHHHHHHHHHH
Confidence 479999999999998776555544
No 206
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.47 E-value=6.2e-05 Score=55.65 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+|++|+||||+++.++..+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345699999999999999999999874
No 207
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.47 E-value=0.00033 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCcHHHHHH-HHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTAL-AIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~-~la~~~ 106 (248)
.++++.+|+|+|||.... .+...+
T Consensus 62 ~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999998743 333443
No 208
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.47 E-value=8e-05 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..|+|.|+||+||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999988
No 209
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.46 E-value=9.2e-05 Score=55.87 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|+||+|+||||+++.++..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45579999999999999999999876
No 210
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.46 E-value=8.1e-05 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|+|+|+||+||||+++.++..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 211
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.46 E-value=0.00064 Score=52.38 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCCceEEEEeCCCCCCH----HHHHHHHHHHhhcC-CceE-EEEEeCCCcc
Q 025762 153 CPPYKIIILDEADSMTE----DAQNALRRTMETYS-KVTR-FFFICNYISR 197 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~~----~~~~~L~~~l~~~~-~~~~-ii~~~n~~~~ 197 (248)
..+.+++|+||+|.+.. .....+..++.... .... ++++++.+..
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~ 223 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYD 223 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHH
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHH
Confidence 34567899999999854 34555666655432 2333 4555554433
No 212
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.46 E-value=7.8e-05 Score=57.02 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..|+|.|+||+||||+++.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999987
No 213
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.46 E-value=5.4e-05 Score=55.68 Aligned_cols=25 Identities=40% Similarity=0.632 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..|+|+|+||+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999999987
No 214
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.45 E-value=9.2e-05 Score=55.78 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..|+|+|++|+||||+++.+++.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44699999999999999999999874
No 215
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.44 E-value=8.2e-05 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|+|+|+||+||||+++.++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999987
No 216
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.44 E-value=0.0001 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|+||+|+||||+++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34579999999999999999999875
No 217
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.43 E-value=0.00014 Score=56.46 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 68 EVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 68 ~~~~~l~~~l~~-~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.+.-.+.. ..+..++|+|++|+||||+++.++..+
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 344444433333 024489999999999999999999988
No 218
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.43 E-value=8.8e-05 Score=54.90 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
-|+|+||+|+|||||++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998875
No 219
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.43 E-value=0.00055 Score=56.00 Aligned_cols=41 Identities=7% Similarity=0.231 Sum_probs=29.6
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~ 194 (248)
.+..+|++|| ...+++.....+++++.+... ...+|++|-+
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3568999999 566788888888888876532 3446777654
No 220
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.42 E-value=0.00011 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|+|+|++|+||||+++.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 359999999999999999999887
No 221
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.42 E-value=0.00064 Score=52.06 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=25.0
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhcCCceE-EEEEeCCCc
Q 025762 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTR-FFFICNYIS 196 (248)
Q Consensus 154 ~~~~vlilDEi~~l~~~-~~~~L~~~l~~~~~~~~-ii~~~n~~~ 196 (248)
.+.+++|+||+|.+... ....+..++...+.... +.++++.+.
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence 44579999999987422 23445555555554554 444445433
No 222
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.42 E-value=0.00011 Score=55.50 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..|+|+|++|+||||+++.++..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999873
No 223
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.41 E-value=0.00012 Score=58.76 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|+||+|+|||+++..+++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999997
No 224
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.41 E-value=9.3e-05 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999988
No 225
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.41 E-value=0.0002 Score=53.61 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 68 EVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 68 ~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++.+.+.+... .+..+.|+|++|+||||+++.++..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455565555432 34469999999999999999999876
No 226
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.41 E-value=0.00089 Score=55.11 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=25.9
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhcCCceEEEEEe
Q 025762 153 CPPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFIC 192 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~~--~~~~~L~~~l~~~~~~~~ii~~~ 192 (248)
..+.+++|+||+|.+.. .....+..++...+....+++.|
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 34567999999998853 45555666666555455544444
No 227
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.40 E-value=0.00012 Score=54.86 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|+||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999999876
No 228
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.39 E-value=0.00012 Score=55.84 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+.|+||+|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999887
No 229
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.38 E-value=0.0001 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..|+|+|++|+||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999986
No 230
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.38 E-value=0.00038 Score=57.39 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHhhcCCceEEEEEeC
Q 025762 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~~~-~~~~L~~~l~~~~~~~~ii~~~n 193 (248)
..+.+++|+||+|.+... ....+..++........+++.|.
T Consensus 160 ~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 201 (394)
T 1fuu_A 160 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSA 201 (394)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred hhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEE
Confidence 345689999999987322 23344455555555555555543
No 231
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.38 E-value=0.0001 Score=54.58 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|+|+|+||+||||+++.++..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999987
No 232
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.38 E-value=0.0042 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...++++.|++|+|||+++.++....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45579999999999999999998865
No 233
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.38 E-value=0.00077 Score=51.32 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHhhcCCceEEEEEe
Q 025762 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFIC 192 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~~~-~~~~L~~~l~~~~~~~~ii~~~ 192 (248)
..+.+++|+||+|.+... ....+..++........+++.|
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 205 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 205 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEE
Confidence 345679999999986432 2334445555555455555444
No 234
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.38 E-value=0.00011 Score=55.69 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+++|+|+||+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 235
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.37 E-value=0.00012 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+.|.||+|+||||+++.++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999886
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.37 E-value=0.00014 Score=54.35 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.-++|+||+|+|||||++.|....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34569999999999999999999875
No 237
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.37 E-value=0.00019 Score=55.93 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++|+|+||+||||+++.++..+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3459999999999999999999987
No 238
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.36 E-value=0.00013 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++|.||+|+||||+++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999887
No 239
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.36 E-value=0.0012 Score=56.45 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.|+|+|++|+||||++..++..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999998874
No 240
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.35 E-value=0.00012 Score=54.18 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|+|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999987
No 241
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.35 E-value=0.00073 Score=52.04 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=25.3
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHhhcCCceEEEE-EeCCC
Q 025762 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFF-ICNYI 195 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~~~-~~~~L~~~l~~~~~~~~ii~-~~n~~ 195 (248)
..+.+++|+||+|.+... ....+..++...+....+++ +++.+
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 218 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecC
Confidence 345679999999987432 23445555555544555544 44433
No 242
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.35 E-value=3.6e-05 Score=57.80 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++....+.+.........-.+++.|++|+|||+|+..+....
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444455444444445579999999999999999998754
No 243
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.34 E-value=0.00013 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
-|.|+|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.34 E-value=0.00014 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..+.|+||+|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999999876
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.31 E-value=0.00012 Score=59.01 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++|.||+|+|||+|+..||+.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 369999999999999999999988
No 246
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.31 E-value=0.0007 Score=57.62 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHH
Q 025762 80 ANCPHMLFYGPPGTGKTTTALA 101 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~ 101 (248)
+.+.++++.||+|+|||.....
T Consensus 129 ~~~~~~l~~a~TGsGKT~~~~l 150 (479)
T 3fmp_B 129 EPPQNLIAQSQSGTGKTAAFVL 150 (479)
T ss_dssp BSCCEEEEECCSSSSHHHHHHH
T ss_pred CCCCcEEEEcCCCCchhHHHHH
Confidence 3346899999999999987543
No 247
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.31 E-value=0.00014 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|.|+||+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 248
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.31 E-value=0.00014 Score=53.90 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|.||+|+||||+++.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 57899999999999999998754
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.31 E-value=0.00027 Score=53.33 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.4
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...+..++|.|++|+||||+++.++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445579999999999999999999987
No 250
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.31 E-value=0.00033 Score=54.78 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALA 101 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~ 101 (248)
.++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4799999999999987544
No 251
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.29 E-value=0.0002 Score=54.26 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.+....+...........++|+|++|+|||+++..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 455566666666655566789999999999999999999886
No 252
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.28 E-value=0.00017 Score=52.82 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..+.|+|++|+||||+++.++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999999986
No 253
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.28 E-value=0.0058 Score=52.27 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=42.5
Q ss_pred ceEEEEeCCCCCCH----HHHHHHHHHHhhcCC-ceEEEEEeCCCc--ccChHHHHhhhh-eeeeccCCccccchHHHHH
Q 025762 156 YKIIILDEADSMTE----DAQNALRRTMETYSK-VTRFFFICNYIS--RCTFSALFSFLL-FFMFFSLLDQISFDKEYIR 227 (248)
Q Consensus 156 ~~vlilDEi~~l~~----~~~~~L~~~l~~~~~-~~~ii~~~n~~~--~~~~~~l~~r~~-~i~~~~~~~~~~~~~~~~~ 227 (248)
+-+++|||+..+-. +..+.|..+...... ...+|++|..+. .+. ..+++.+. .+.|.-.+..+. ..+
T Consensus 298 ~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~-~~i~~n~~~RI~lrv~s~~ds----r~i 372 (512)
T 2ius_A 298 YIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVIT-GLIKANIPTRIAFTVSSKIDS----RTI 372 (512)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSC-HHHHHHCCEEEEECCSSHHHH----HHH
T ss_pred cEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCcccccc-HHHHhhcCCeEEEEcCCHHHH----HHh
Confidence 34899999865432 233444444444333 455778887765 465 67777665 578887777777 555
Q ss_pred HH
Q 025762 228 II 229 (248)
Q Consensus 228 l~ 229 (248)
+.
T Consensus 373 lg 374 (512)
T 2ius_A 373 LD 374 (512)
T ss_dssp HS
T ss_pred cC
Confidence 43
No 254
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.27 E-value=0.00017 Score=56.05 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
....|.|+|++|+||||+++.|+..+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33469999999999999999999987
No 255
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00072 Score=54.39 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||..+...+...
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~ 55 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhh
Confidence 489999999999998776655443
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.25 E-value=0.0006 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..+.++|++|+||||++..++..+.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588899999999999999999874
No 257
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.25 E-value=0.001 Score=56.05 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.+|+|+|||..+..++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999998887665
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.24 E-value=0.00024 Score=56.58 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
-++|+||+|+|||+|+..+++.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 58899999999999999999997
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.22 E-value=0.00024 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|+||+|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44579999999999999999999976
No 260
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.22 E-value=0.00019 Score=60.40 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHH-HHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTA-LAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la-~~la~~ 105 (248)
+.+++++||+|+|||..+ ..+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~ 26 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVRE 26 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999986 444433
No 261
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.21 E-value=0.00026 Score=53.83 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|+||+|+|||||++.++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44569999999999999999999886
No 262
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.21 E-value=0.0025 Score=54.03 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+.+.+..++.. .++++.+|+|+|||..+..++...
T Consensus 96 ~~Q~~ai~~i~~~---~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 96 DYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp HHHHHHHHHHTTT---TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 4444444443332 369999999999999998888776
No 263
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.21 E-value=0.0016 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
..++++|++|+||||++..++..+...
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 358899999999999999999988543
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.20 E-value=0.00021 Score=53.79 Aligned_cols=26 Identities=35% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|+||+|+||||+++.++..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999999986
No 265
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.20 E-value=0.00023 Score=56.78 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
-++|.||+|+|||+++..++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 58899999999999999999987
No 266
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.20 E-value=0.00028 Score=53.10 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+||||+++.++..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345579999999999999999999886
No 267
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.18 E-value=0.00029 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.|+|++|+||||+++.++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999986
No 268
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.18 E-value=0.0032 Score=45.71 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTALA 101 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~ 101 (248)
.+..+.|+||+|+||||+++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 344689999999999999995
No 269
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.18 E-value=0.00029 Score=53.99 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..+.|.||+|+||||+++.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999988
No 270
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.18 E-value=0.0004 Score=59.40 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=32.0
Q ss_pred HHHHHHHHHHH--HcCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 67 EEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 67 ~~~~~~l~~~l--~~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
.++.+.+.+.. ....+.+|+|+|.+|+||||++++|++.+..
T Consensus 378 peV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 378 PEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45555555544 3334557999999999999999999999954
No 271
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.18 E-value=0.00049 Score=61.67 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIA 103 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la 103 (248)
+.+++++||+|+|||+.+...+
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHHH
Confidence 4589999999999999985444
No 272
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.18 E-value=0.00029 Score=54.78 Aligned_cols=26 Identities=38% Similarity=0.566 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||+|+||||+++.++..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34579999999999999999999887
No 273
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.17 E-value=0.0011 Score=57.89 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=30.8
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCccc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRC 198 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~ 198 (248)
+.+++++|| ...+++.....+.+.+........+|++|-+...+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~ 539 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI 539 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 357999999 45678888888888887665555567777654433
No 274
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.17 E-value=0.00032 Score=56.71 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|.||+|+|||+++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 58999999999999999999998
No 275
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.17 E-value=0.0017 Score=56.84 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=30.2
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 155 PYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDEi-~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
+.+++++||. ..+++.....+.+.+.+......+|++|-+.
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 538 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKI 538 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCh
Confidence 4579999994 5678888888888887765555567777653
No 276
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.17 E-value=0.00021 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.|+|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 589999999999999999998 6
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.16 E-value=0.00056 Score=54.34 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..+.|.||+|+||||+++.++..+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34589999999999999999998873
No 278
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.24 E-value=6e-05 Score=56.45 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 73 l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+...+...+.-.+++.|++|+|||+|+..+....
T Consensus 21 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 3333333444579999999999999998887543
No 279
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.16 E-value=0.00011 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+..+...-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 280
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.16 E-value=0.00024 Score=51.83 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.-.+++.|++|+|||+++..+...-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999988653
No 281
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.15 E-value=0.00075 Score=56.39 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=31.8
Q ss_pred cccccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
++++--.......+...+ ...+..++|+||+|+||||++++++..+.
T Consensus 146 l~~Lg~~~~~~~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 146 LHSLGMTAHNHDNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp GGGSCCCHHHHHHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 334332333334444443 34445799999999999999999999874
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.15 E-value=0.00052 Score=52.11 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
++....+...+.......++|+|++|+|||+++..++....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44455555555555666799999999999999999998863
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.15 E-value=0.0003 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||.|+||||+++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445579999999999999999999987
No 284
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.14 E-value=0.00094 Score=60.20 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|..++..+...+..+...++++.||+|+|||..+...+...
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~ 413 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN 413 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH
Confidence 466677777766666666789999999999999886655443
No 285
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.14 E-value=0.00024 Score=53.30 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (248)
.+.|+||+|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 286
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.14 E-value=0.0027 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.|++|+|||+++..+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998764
No 287
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.13 E-value=0.00036 Score=53.16 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|.||+|+|||++++.++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999765
No 288
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.13 E-value=0.0002 Score=53.20 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++|+||||+|||++|..+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 359999999999999999999875
No 289
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.13 E-value=0.00018 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.|++.|++|+|||+|+.++...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999998654
No 290
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.12 E-value=0.00044 Score=54.06 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.3
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...+..++|+||+|+||||+++.++...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3455579999999999999999999876
No 291
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.12 E-value=0.00035 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.|+|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 292
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.12 E-value=0.0073 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.|.|++|+|||||++.++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999998765
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.12 E-value=0.00026 Score=53.41 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+..+.|.||+|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 447999999999999999999876
No 294
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.11 E-value=0.00017 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+..+...-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 295
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.10 E-value=0.0029 Score=54.24 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+...+..++.. .+++++||+|+|||..+..++...
T Consensus 116 ~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 116 WYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp HHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 3444444444433 479999999999999998777765
No 296
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.09 E-value=0.0011 Score=59.50 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTAL 100 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~ 100 (248)
+.+++++||+|+|||..+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4589999999999999884
No 297
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.09 E-value=0.0042 Score=48.03 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
+|+|.|.||+|||+++.++...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999998754
No 298
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.08 E-value=0.002 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..|+|.|++|+|||+|+.++...-
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 369999999999999999998654
No 299
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.0024 Score=55.17 Aligned_cols=41 Identities=7% Similarity=0.162 Sum_probs=31.0
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
+.++|++|| -..+++.....+++++........+|+++-+.
T Consensus 156 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl 197 (538)
T 3ozx_A 156 EADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeCh
Confidence 457999999 66788888888888888765555567776543
No 300
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.08 E-value=0.0045 Score=54.07 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhhcCCceEEEEEeCC
Q 025762 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDEi-~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~ 194 (248)
.+.+++++||. ..+++.....+.+.+.+......+|++|-+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 538 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 34689999994 567888888888888776544446666654
No 301
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.08 E-value=0.00014 Score=54.81 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.|.|.|++|+||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999873
No 302
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.07 E-value=0.00016 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+..+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998764
No 303
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0017 Score=60.86 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+++++||+|+|||..+...+...
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~ 223 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQS 223 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHH
Confidence 3589999999999999876655544
No 304
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.07 E-value=0.00037 Score=53.78 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~ 104 (248)
.+..+.|.||+|+||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455799999999999999999984
No 305
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.07 E-value=0.0036 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+|.|.+|+|||+|+..+...-
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 49999999999999999987653
No 306
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.0018 Score=49.57 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||+|+|||+++..++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 44579999999999999999999874
No 307
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.06 E-value=0.00043 Score=59.40 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+...+...+..+. +++|+||+|+||||++++++..+
T Consensus 247 ~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 247 SGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 445555555555444 79999999999999999998876
No 308
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.06 E-value=0.00034 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
...|.|+|++|+||||+++.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346999999999999999999985
No 309
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.06 E-value=0.0017 Score=50.30 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.0
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALA 101 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~ 101 (248)
.++++.+|+|+|||..+..
T Consensus 61 ~~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4799999999999986543
No 310
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.06 E-value=0.0046 Score=43.91 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.|++|+|||+|+.++...-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999988654
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.05 E-value=0.0005 Score=54.91 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=24.7
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...+..+.|+||+|+|||||++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3456689999999999999999999987
No 312
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.04 E-value=0.00017 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+..+...-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998764
No 313
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0022 Score=56.15 Aligned_cols=40 Identities=5% Similarity=0.087 Sum_probs=29.1
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNY 194 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~ 194 (248)
+.++|++|| ...|++.....+.+++..... ...+|+++-+
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 280 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 357999999 667888888888888877543 3346666644
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.03 E-value=0.0033 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.|++|+|||+++..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
No 315
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.0024 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+|.|++|+|||+|+..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998875
No 316
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.02 E-value=0.0057 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+++..+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998764
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.02 E-value=0.00037 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+.|+|++|+||||+++.++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999875
No 318
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.02 E-value=0.0014 Score=58.60 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=24.5
Q ss_pred cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHH
Q 025762 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103 (248)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la 103 (248)
..|.+++..+. . +.++++.||+|+|||+.+...+
T Consensus 28 ~~Q~~~i~~i~----~--~~~~lv~apTGsGKT~~~~l~i 61 (702)
T 2p6r_A 28 PPQAEAVEKVF----S--GKNLLLAMPTAAGKTLLAEMAM 61 (702)
T ss_dssp CCCHHHHHHHT----T--CSCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----C--CCcEEEEcCCccHHHHHHHHHH
Confidence 35666665532 2 4589999999999999985444
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.01 E-value=0.00028 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=16.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH-HHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIA-HQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la-~~~ 106 (248)
.+..+.|+||+|+||||+++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34569999999999999999999 764
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.01 E-value=0.00092 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+.|.||+|+||||+++.+...+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999998874
No 321
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.01 E-value=0.00083 Score=59.24 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
++.+..++...+. .+..+|+||||||||+++..++..+.
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4566666665553 34789999999999999988887763
No 322
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.00 E-value=0.0025 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.|++|+|||+|+..+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998754
No 323
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.00 E-value=0.00061 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.020 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+.+.|.|++|+||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 34689999999999999999999874
No 324
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.99 E-value=0.00058 Score=54.59 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
.+..+.|+||+|+||||+++.++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3457999999999999999999998743
No 325
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.98 E-value=0.0005 Score=52.65 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
.+..++|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3446999999999999999999999843
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.97 E-value=0.00045 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..+.|.||+|+||||+++.++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344699999999999999999998653
No 327
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.96 E-value=0.00054 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|+||+|+||||+++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44469999999999999999999876
No 328
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.96 E-value=0.00061 Score=51.43 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~ 104 (248)
.+..++|.||||+|||+++..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999998
No 329
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.93 E-value=0.01 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||..+...+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 479999999999998877665443
No 330
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.93 E-value=0.0016 Score=55.73 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=67.8
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhh-h-
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-V- 142 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 142 (248)
.|.+.+..+......+ .+.++.-++|+|||..+-+++..+...+. ...++.+.+... ...+...+..+.... .
T Consensus 41 ~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~~l--~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 41 YQIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPLSV--LKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp HHHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECSTT--HHHHHHHHHHHCTTSCEE
T ss_pred HHHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccHHH--HHHHHHHHHHHCCCceEE
Confidence 3445544443333333 47899999999999999888877642221 224444444332 223333333321100 0
Q ss_pred -cCCCC-CCC-------------------CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCcccChH
Q 025762 143 -GSGQR-RGG-------------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRCTFS 201 (248)
Q Consensus 143 -~~~~~-~~~-------------------~~~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~~~~~~ 201 (248)
..+.. ... ......+++|+||+|.+.... ....+.+.......++.+|+++...-. .
T Consensus 116 ~~~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~n~~-~ 193 (500)
T 1z63_A 116 VFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIENKV-D 193 (500)
T ss_dssp ECSSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCSTTCH-H
T ss_pred EEecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCCCCH-H
Confidence 00000 000 012346899999999984321 123344444444556777777654433 4
Q ss_pred HHHh
Q 025762 202 ALFS 205 (248)
Q Consensus 202 ~l~~ 205 (248)
.+.+
T Consensus 194 el~~ 197 (500)
T 1z63_A 194 DLWS 197 (500)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 331
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.92 E-value=0.0015 Score=57.30 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|+||+|+||||+++.++...
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 355679999999999999999998876
No 332
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.91 E-value=0.0011 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|+|++|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44579999999999999999999987
No 333
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.91 E-value=0.0029 Score=55.65 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhcCCCccccceEEeccCCCcchHHHHHHHHHhHhhhhcCCC
Q 025762 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (248)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
.++.+.+...+.... ...+|+|+.|.|||+++-.++..+.. .+ .+..+...+...+.+...... ....+
T Consensus 178 ~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~------~~-~vtAP~~~a~~~l~~~~~~~i---~~~~P 246 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAG------RA-IVTAPAKASTDVLAQFAGEKF---RFIAP 246 (671)
T ss_dssp HHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSS------CE-EEECSSCCSCHHHHHHHGGGC---CBCCH
T ss_pred HHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHh------Cc-EEECCCHHHHHHHHHHhhCCe---EEeCc
Confidence 344455544444332 35899999999999999999998732 22 344555445555444332210 00000
Q ss_pred CCCCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 025762 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRR 177 (248)
Q Consensus 147 ~~~~~~~~~~~vlilDEi~~l~~~~~~~L~~ 177 (248)
-.......+.++|||||+-.+|......|+.
T Consensus 247 d~~~~~~~~~dlliVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 247 DALLASDEQADWLVVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp HHHHHSCCCCSEEEEETGGGSCHHHHHHHHT
T ss_pred hhhhhCcccCCEEEEEchhcCCHHHHHHHHh
Confidence 0000122346899999999999877665553
No 334
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.91 E-value=0.00016 Score=52.89 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+..+....
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 335
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.91 E-value=0.0023 Score=50.95 Aligned_cols=25 Identities=40% Similarity=0.359 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..++++|++|+||||++..++..+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999998874
No 336
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.00068 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|.||||+|||+++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44579999999999999998887765
No 337
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.91 E-value=0.00064 Score=54.60 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..+..+.|.||+|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3445699999999999999999999874
No 338
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.90 E-value=0.0041 Score=54.36 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=29.4
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 155 PYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDEi-~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
+.+++++||. ..+++.....+.+.+.+......+|++|-+..
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 3579999994 56788888888887776544445677775543
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.90 E-value=0.0024 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+|++.|++|+|||+|+..+...-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 340
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.90 E-value=0.00057 Score=52.55 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=30.0
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~~ 195 (248)
+..+|++|| ...+++.....+++++.+... ...+|++|-+.
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 457999999 667888888888888876532 34467777653
No 341
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.90 E-value=0.00056 Score=54.65 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.++|.||||+|||+|+..++..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999988877763
No 342
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.90 E-value=0.00072 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|.||+|+|||+|+..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 57899999999999999999987
No 343
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.89 E-value=0.0017 Score=53.18 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=28.4
Q ss_pred HHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 70 VRVLTNTLE--TANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 70 ~~~l~~~l~--~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
...+...+. ......+.|+|+||+||||++..++..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334444443 334557999999999999999999988743
No 344
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.89 E-value=0.0043 Score=51.86 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
..++++|++|+||||++..++..+...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 358899999999999999999998543
No 345
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.89 E-value=0.0049 Score=49.48 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
.+.-++|.|+||+|||+++..++..+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3446999999999999999999977643
No 346
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.88 E-value=0.0006 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~ 104 (248)
..+.|+|++|+||||+++.++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.88 E-value=0.00072 Score=49.42 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+.+.|+|++|+||||++..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 34689999999999999999998863
No 348
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.87 E-value=0.0069 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998654
No 349
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.87 E-value=0.00065 Score=58.80 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=29.4
Q ss_pred HHHHHHHHHH--HcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 68 EVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 68 ~~~~~l~~~l--~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+.+.+.... ....+..+.|+|++|+||||+++.|+..+.
T Consensus 353 eV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 353 EVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3444444433 233555799999999999999999999984
No 350
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.86 E-value=0.0044 Score=50.15 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+.-++|.|+||+|||+++..++..+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344699999999999999999998874
No 351
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.86 E-value=0.0011 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|+||+|+||||++++++...
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34489999999999999999999876
No 352
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.86 E-value=0.0046 Score=55.59 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++|+||.|+||||+.+.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3468999999999999999998764
No 353
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.86 E-value=0.00065 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+..++|+|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 446999999999999999999884
No 354
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.85 E-value=0.0024 Score=47.15 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
-.|++.|++|+|||+|+.++...-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998764
No 355
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.85 E-value=0.0032 Score=50.76 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+..++|+||||+|||+++..++..+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 345799999999999999999998863
No 356
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.85 E-value=0.00094 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+.|+|++|+|||++++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 369999999999999999999987
No 357
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.84 E-value=0.0062 Score=55.94 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+..++|+||.|+||||+.+.++..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998543
No 358
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.84 E-value=0.00091 Score=54.14 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 69 ~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+.+.-.+..+. .++|+||+|+||||++++++...
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 4455554454444 89999999999999999999886
No 359
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.84 E-value=0.0019 Score=56.81 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=18.6
Q ss_pred CCCeEEEEcCCCCcHHHHH-HHHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTA-LAIAHQ 105 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la-~~la~~ 105 (248)
.+.++++.+|+|+|||... -.+...
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~ 210 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVRE 210 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999963 434433
No 360
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.003 Score=58.68 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
.++++.+|+|+|||.++......
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~ 124 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQ 124 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHH
Confidence 48999999999999987654443
No 361
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.83 E-value=0.0063 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+..+...-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 59999999999999999998754
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.83 E-value=0.0015 Score=52.36 Aligned_cols=28 Identities=25% Similarity=0.134 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..+..+.|+||+|+||||+++.++..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445699999999999999999999873
No 363
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.83 E-value=0.0065 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||..+...+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 489999999999998877666544
No 364
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.83 E-value=0.0032 Score=55.55 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=26.6
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHHhhcCC---ceEEEEEeCC
Q 025762 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSK---VTRFFFICNY 194 (248)
Q Consensus 153 ~~~~~vlilDEi~~l~~~~~~~L~~~l~~~~~---~~~ii~~~n~ 194 (248)
..+.+++||||++.++......+..+++..+. ...++++++.
T Consensus 316 l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~ 360 (666)
T 3o8b_A 316 GGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATP 360 (666)
T ss_dssp TTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred cCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCC
Confidence 34568999999999987766555555554432 2234445543
No 365
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.83 E-value=0.0064 Score=51.04 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTAL 100 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~ 100 (248)
+.++++.+|+|+|||....
T Consensus 93 g~d~i~~a~TGsGKT~a~~ 111 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAFL 111 (434)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCchHHHH
Confidence 3589999999999998543
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.82 E-value=0.00092 Score=55.06 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..++|+||+|+||||+++.++..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445579999999999999999999876
No 367
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.82 E-value=0.00032 Score=51.68 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998764
No 368
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.81 E-value=0.00063 Score=51.92 Aligned_cols=41 Identities=7% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcC-CceEEEEEeCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYS-KVTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~ 194 (248)
.+..++++|| ...+++.....+.+++.+.. ....+|++|-+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3467999999 56788888888888887653 23446666654
No 369
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.80 E-value=0.00077 Score=51.90 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|+||+|+|||||++.++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998876
No 370
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.80 E-value=0.0054 Score=51.89 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+.-++|.|+||+|||+++..++..+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44599999999999999999998873
No 371
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.80 E-value=0.00097 Score=53.01 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..+..++|.||||+|||+++..++..+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3455799999999999999999998874
No 372
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.79 E-value=0.00093 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|+||+|+|||+++..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44579999999999999999999766
No 373
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.79 E-value=0.0042 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999987653
No 374
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.78 E-value=0.0016 Score=58.96 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
++.+..++...+. .+..+|+||||||||+++..++..+.
T Consensus 358 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp CHHHHHHHHHHHT---SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc---CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4556666665553 34689999999999999988887764
No 375
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.78 E-value=0.00042 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+.++...-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 59999999999999999998764
No 376
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.78 E-value=0.00023 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.|++.|++|+|||+|+..+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 377
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.76 E-value=0.077 Score=37.38 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.|++|+|||+|+..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 378
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.76 E-value=0.0019 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCcHHHH-HHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTT-ALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~l-a~~la~~ 105 (248)
+.++++.+|+|+|||.. +..+...
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~ 45 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKD 45 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999997 3444443
No 379
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.75 E-value=0.00095 Score=53.32 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..+.|+||+|+||||+++.++..+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999874
No 380
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.75 E-value=0.0041 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+.-++|.|+||+|||+++..++..+.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34599999999999999999998874
No 381
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.75 E-value=0.00086 Score=52.45 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+|||||++.++...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355579999999999999999998876
No 382
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.0062 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.|++.|++|+|||+|+..+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998754
No 383
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.73 E-value=0.00084 Score=50.80 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||.|+|||||++.++...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998876
No 384
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.72 E-value=0.00036 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+..+...-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 59999999999999999998754
No 385
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.72 E-value=0.00077 Score=53.30 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~ 104 (248)
..|.|+|++|+||||+++.++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999994
No 386
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.72 E-value=0.01 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+..++|+||.|+||||+.+.++..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 446999999999999999988754
No 387
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.72 E-value=0.0018 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=18.6
Q ss_pred CCCeEEEEcCCCCcHHHHH-HHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTA-LAIAH 104 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la-~~la~ 104 (248)
.+.++++.||+|+|||..+ -.+..
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~ 31 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILA 31 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 3558999999999999985 44444
No 388
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=96.71 E-value=0.0024 Score=59.32 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.||+|+|||..+...+..+
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~~~ 78 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIAMA 78 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHH
Confidence 489999999999998655544443
No 389
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.00033 Score=52.50 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+..+...-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999998753
No 390
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.00058 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+.+.|+|++|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3688999999999999999999984
No 391
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.00099 Score=51.28 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..++|.|+||+|||+++..++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999877653
No 392
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.71 E-value=0.0011 Score=51.38 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=29.8
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~ 195 (248)
+..+|++|| ...+++.....+.+++..... ...+|++|-+.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 357999999 566788888888888877643 34566666543
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.70 E-value=0.001 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
-.+|+||.|+|||+++.++...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 579999999999999999999874
No 394
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.69 E-value=0.0011 Score=53.55 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..+.|+||+|+||||+++.++..+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44699999999999999999998874
No 395
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.69 E-value=0.00096 Score=52.01 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=29.9
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~~ 196 (248)
+..+|++|| ...+++.....+.+++..... ...+|++|-+..
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 457999999 667888888888888876532 345666665443
No 396
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.69 E-value=0.0038 Score=59.69 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|+||+|+||||+++.+.+..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 456679999999999999999999876
No 397
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.69 E-value=0.0012 Score=51.67 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=30.4
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC-ceEEEEEeCCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~-~~~ii~~~n~~ 195 (248)
+..+|++|| ...+++.....+.+++..... ...+|++|-+.
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 224 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH
Confidence 357999999 567889999999999987643 34466666543
No 398
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.68 E-value=0.00099 Score=51.60 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=29.8
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
+..++++|| ...+++.....+.+++........+|++|-+..
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~ 205 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 457999999 566788888888888776544445677765533
No 399
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.68 E-value=0.00095 Score=52.55 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=30.9
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcC-C-ceEEEEEeCCCcc
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYS-K-VTRFFFICNYISR 197 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~-~-~~~ii~~~n~~~~ 197 (248)
.+..+|++|| ...+++.....+++++.+.. . ...+|++|-+...
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 3458999999 66788888888888887653 2 3456777765443
No 400
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0026 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
....+++.|++|+|||+++..+...-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34479999999999999999998754
No 401
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.67 E-value=0.001 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||.|+|||||++.++...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45579999999999999999999876
No 402
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.67 E-value=0.0011 Score=51.93 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=29.4
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcC-CceEEEEEeCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYS-KVTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~ 194 (248)
.+..+|++|| ...+++.....+.+++.+.. ....+|++|-+
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3458999999 66788888888888887653 23446666654
No 403
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.66 E-value=0.001 Score=51.27 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=29.2
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcC-CceEEEEEeCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYS-KVTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~ 194 (248)
.+..+|++|| ...+++.....+.+.+.+.. ....+|++|-+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3468999999 66788888888888887653 23346666654
No 404
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.00046 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+..+....
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998764
No 405
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.66 E-value=0.012 Score=50.99 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHH
Q 025762 80 ANCPHMLFYGPPGTGKTTTAL 100 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~ 100 (248)
+.+.++++.+|+|+|||..+.
T Consensus 109 ~~~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 109 SEDHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SSSEEEEEECCTTSCHHHHHH
T ss_pred CCCCeEEEECCCCCCccHHHH
Confidence 345689999999999998644
No 406
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.66 E-value=0.0012 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.++|+||+|+||||++..++..+.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHH
Confidence 589999999999999999999874
No 407
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.66 E-value=0.0012 Score=53.93 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+|||||.+.++...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345579999999999999999999876
No 408
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.66 E-value=0.0014 Score=57.07 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..|+|+|++|+||||+++.+++.+.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 34699999999999999999999973
No 409
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.65 E-value=0.0011 Score=51.74 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=30.7
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
+..++++|| ...+++.....+.+.+........+|++|-+..
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~ 215 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 357999999 566788888888888877655455677775543
No 410
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.002 Score=58.29 Aligned_cols=38 Identities=37% Similarity=0.596 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++.+..++...+. .+..+|.||||||||+++..++..+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666655543 3468999999999999988776654
No 411
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.65 E-value=0.001 Score=52.09 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=29.3
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNY 194 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~ 194 (248)
+..+|++|| ...+++.....+++++..... ...+|++|-+
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 578999999 567888888888888876532 2346666654
No 412
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.65 E-value=0.00068 Score=53.86 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...|.|+||+|+||||+++.++..+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999876
No 413
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.65 E-value=0.0055 Score=45.53 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|++.|++|+|||+|+..+...-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 59999999999999999997653
No 414
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.64 E-value=0.0011 Score=51.18 Aligned_cols=41 Identities=10% Similarity=0.207 Sum_probs=29.3
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~ 194 (248)
.+..++++|| ...+++.....+.+.+.+... ...+|++|-+
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457999999 667888888888888876532 3346666654
No 415
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.64 E-value=0.0011 Score=51.45 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=27.5
Q ss_pred EEEEeC-CCCCCHHHHHHHHHHHhhcC-CceEEEEEeCC
Q 025762 158 IIILDE-ADSMTEDAQNALRRTMETYS-KVTRFFFICNY 194 (248)
Q Consensus 158 vlilDE-i~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~ 194 (248)
++++|| ...+++.....+.+++.... ....+|++|-+
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999999 66788888888888887653 23446666654
No 416
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.64 E-value=0.0012 Score=51.52 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcC-CceEEEEEeCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYS-KVTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~ 194 (248)
.+..++++|| ...+++.....+.+++.... ....+|++|-+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 205 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3457999999 56788888888888887653 23456667654
No 417
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.64 E-value=0.0011 Score=51.99 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~ 194 (248)
.+..+|++|| ...+++.....+.+++..... ...+|++|-+
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 3457999999 567888889999999987643 4456777754
No 418
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.64 E-value=0.0044 Score=46.51 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998764
No 419
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.63 E-value=0.0095 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||..+...+...
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~~ 52 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEHH 52 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHHH
Confidence 489999999999999887766543
No 420
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.63 E-value=0.00096 Score=51.56 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||+|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45579999999999999999998876
No 421
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.63 E-value=0.0012 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
..+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999865
No 422
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.63 E-value=0.0012 Score=48.99 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++|.|++|+|||+|++.+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 423
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.61 E-value=0.0012 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998865
No 424
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0012 Score=50.79 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..++|.|++|+||||+++.++..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999997
No 425
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.60 E-value=0.0015 Score=49.44 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~ 110 (248)
.-|.|.|++|+||||+++.++..+...+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3589999999999999999999985443
No 426
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.59 E-value=0.0003 Score=52.35 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.|++.|++|+|||+|+..+...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998754
No 427
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.58 E-value=0.0012 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||+|+|||||++.++...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45579999999999999999998876
No 428
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.58 E-value=0.0013 Score=51.50 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=29.8
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcC-CceEEEEEeCCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~-~~~~ii~~~n~~ 195 (248)
.+..++++|| ...+++.....+.+++.... ....+|++|-+.
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~ 198 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3458999999 56788888888888887653 234466666543
No 429
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.58 E-value=0.0016 Score=53.28 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+|||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 345579999999999999999999876
No 430
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.57 E-value=0.0015 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||+|+|||||.+.++...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45579999999999999999999876
No 431
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.57 E-value=0.0016 Score=46.60 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.|++|+|||+++..+...-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 432
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.57 E-value=0.01 Score=43.80 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (248)
..+++.|++|+|||+|++.+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999877654
No 433
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.57 E-value=0.0016 Score=53.30 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+|||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345579999999999999999999876
No 434
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.57 E-value=0.0015 Score=53.44 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.+.|+||+|+||||+++.++..+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Confidence 589999999999999999999874
No 435
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0027 Score=46.46 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 77 LETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 77 l~~~~~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+.......+++.|++|+|||+|+..+...
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34455557999999999999999999853
No 436
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.56 E-value=0.0046 Score=46.69 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~ 110 (248)
+.-|.|.|++|+||||.++.++..+...+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34689999999999999999999985443
No 437
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.55 E-value=0.0015 Score=49.89 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
++.-|+|.|++|+||||+++.++..+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344699999999999999999999884
No 438
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.55 E-value=0.0064 Score=50.46 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCCC---ccccceEEeccCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~---~~~~~~~~~~~~~ 123 (248)
+..+.|+||||+|||+|+..++-....+. ......+.++..+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 44599999999999999998875543221 1223455555544
No 439
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.55 E-value=0.0013 Score=51.07 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=29.2
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNY 194 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~ 194 (248)
+..+|++|| ...+++.....+.+.+.+... ...+|++|-+
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 457999999 566888888888888876532 3456667654
No 440
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.53 E-value=0.0017 Score=53.31 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+|||||.+.++...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345579999999999999999999876
No 441
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.53 E-value=0.0015 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.++|.|++|+|||+|...+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 442
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.52 E-value=0.0017 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+-|.|+||+||||+++.++..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 443
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.52 E-value=0.0026 Score=55.01 Aligned_cols=41 Identities=29% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH--HcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 67 EEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 67 ~~~~~~l~~~l--~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.++.+.+.+.. ....+..++|+|++|+||||+++.+++.+.
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 34445555444 223345699999999999999999999873
No 444
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.52 E-value=0.0056 Score=49.25 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..++|+||||+|||+++..++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4469999999999999999999874
No 445
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.51 E-value=0.0012 Score=48.34 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (248)
.++|.|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999876
No 446
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.51 E-value=0.002 Score=49.02 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=24.7
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHhcC
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (248)
...+.-|.|.|++|+||||+++.++..+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 334556999999999999999999998843
No 447
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.51 E-value=0.014 Score=57.13 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 025762 82 CPHMLFYGPPGTGKTTTALAIA 103 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la 103 (248)
..|++++-|+|+|||.+|...+
T Consensus 95 ~~N~lv~APTGsGKTlva~l~i 116 (1724)
T 4f92_B 95 DENLLLCAPTGAGKTNVALMCM 116 (1724)
T ss_dssp CCCEEEECCTTSCCHHHHHHHH
T ss_pred CCcEEEEeCCcchHHHHHHHHH
Confidence 3489999999999999886543
No 448
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.50 E-value=0.0026 Score=52.29 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+.+--.+..++++.++|+||+|+|||+|+..+++.+
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 444444555678899999999999999999999876
No 449
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.49 E-value=0.0018 Score=53.23 Aligned_cols=26 Identities=42% Similarity=0.555 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||+|+|||||.+.++...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45579999999999999999999876
No 450
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.49 E-value=0.019 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHH
Q 025762 80 ANCPHMLFYGPPGTGKTTTALA 101 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~ 101 (248)
+.+.++++.+|+|+|||..+..
T Consensus 58 ~~~~dvlv~apTGsGKTl~~~l 79 (579)
T 3sqw_A 58 SEDHDVIARAKTGTGKTFAFLI 79 (579)
T ss_dssp SSSEEEEEECCTTSCHHHHHHH
T ss_pred cCCCeEEEEcCCCcHHHHHHHH
Confidence 3456899999999999986443
No 451
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.49 E-value=0.0019 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.|++|+|||+|+.++...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 452
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.48 E-value=0.082 Score=42.14 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 025762 85 MLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~ 105 (248)
|.|+|.||+|||||..++...
T Consensus 13 v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 999999999999999998765
No 453
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.48 E-value=0.0032 Score=46.78 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=4.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.|++.|++|+|||+|+..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998766
No 454
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.46 E-value=0.0018 Score=46.62 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.+++.|++|+|||+|+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999998754
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.46 E-value=0.0023 Score=48.43 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
++.-|+|.|++|+||||+++.++..+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999999984
No 456
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.46 E-value=0.0014 Score=53.35 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHhhcCC--ceEEEEEeCC
Q 025762 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYSK--VTRFFFICNY 194 (248)
Q Consensus 154 ~~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~--~~~ii~~~n~ 194 (248)
.+..+|++|| ...+++.....+.+.+..... ...+|++|-+
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3458999999 677888888888887766532 3446666644
No 457
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.46 E-value=0.0023 Score=47.86 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..|.|.|++|+|||++++.+|..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999999993
No 458
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.45 E-value=0.0015 Score=51.01 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=31.1
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCCc
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~~ 196 (248)
+..++++|| ...+++.....+.+.+.+... .+|++|-+..
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 457999999 667889999999999988765 5666765533
No 459
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.45 E-value=0.002 Score=46.51 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++++.|++|+|||+|+..+...-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998653
No 460
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.45 E-value=0.0024 Score=49.05 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcCC
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (248)
+.-|+|.|++|+||||+++.++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3469999999999999999999988443
No 461
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.45 E-value=0.0016 Score=53.51 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..+.|+||+|+|||||++.++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 44699999999999999999999874
No 462
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.44 E-value=0.00033 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+..+...-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998654
No 463
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.44 E-value=0.002 Score=54.69 Aligned_cols=26 Identities=38% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+..+.|+|++|+||||+++.|+..+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 33589999999999999999998874
No 464
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.42 E-value=0.0046 Score=50.39 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...+.|+|+||+|||||..++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999865
No 465
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.42 E-value=0.002 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 466
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.41 E-value=0.0084 Score=57.21 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|+||+|+||||+++.+....
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456679999999999999999998876
No 467
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.41 E-value=0.0022 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+++..+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998664
No 468
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.41 E-value=0.0022 Score=46.46 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.|++|+|||+|+..+...-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998754
No 469
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.41 E-value=0.016 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.++++.+|+|+|||..+...+...
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~ 287 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHH 287 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 489999999999999877666554
No 470
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.40 E-value=0.0018 Score=47.18 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~ 104 (248)
.....+++.|++|+|||+|+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3445799999999999999988763
No 471
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.40 E-value=0.0025 Score=46.03 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~ 105 (248)
+...|++.|++|+|||+|+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999764
No 472
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.40 E-value=0.0023 Score=45.61 Aligned_cols=23 Identities=17% Similarity=0.496 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+.++...-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 473
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.40 E-value=0.002 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
..|+++|.||+||||+++.+++.+.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3589999999999999999999873
No 474
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.39 E-value=0.0022 Score=53.06 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=30.3
Q ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHhhcCCceEEEEEeCCC
Q 025762 155 PYKIIILDE-ADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (248)
Q Consensus 155 ~~~vlilDE-i~~l~~~~~~~L~~~l~~~~~~~~ii~~~n~~ 195 (248)
+.++|++|| ...+++.....+...+........+|+++.+.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~ 214 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARI 214 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSS
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 457999999 66778888888888887665555577777654
No 475
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.39 E-value=0.0024 Score=51.80 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=24.2
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 79 TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 79 ~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
...+..+.|+||||+||||+.+.++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455679999999999999999999776
No 476
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.38 E-value=0.0076 Score=53.53 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.2
Q ss_pred CCCeEEEEcCCCCcHHHHH-HHHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTA-LAIAHQ 105 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la-~~la~~ 105 (248)
.+.++++.||+|+|||..+ -.+...
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~ 265 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKD 265 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999974 444443
No 477
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.37 E-value=0.0019 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..+.|.||.|+|||||++.++...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45579999999999999999998876
No 478
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.37 E-value=0.0023 Score=45.85 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (248)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999863
No 479
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.36 E-value=0.0025 Score=45.56 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+.++...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 480
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.35 E-value=0.0024 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.35 E-value=0.00077 Score=52.65 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
++..|+|.|++|+||||+++.|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 33469999999999999999999887
No 482
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.34 E-value=0.012 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHH
Q 025762 81 NCPHMLFYGPPGTGKTTTALA 101 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~ 101 (248)
.++++++.||+|+|||+.+-.
T Consensus 154 ~rk~vlv~apTGSGKT~~al~ 174 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQ 174 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 445799999999999995443
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.33 E-value=0.0024 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQ 105 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~ 105 (248)
.+++.|++|+|||+|+..+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999864
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.32 E-value=0.0022 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..+.|+||+|+|||+|+..++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999886
No 485
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.32 E-value=0.0039 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..+.|.||+|+|||||++.++ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3468999999999999999999 54
No 486
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.31 E-value=0.0028 Score=51.62 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=26.9
Q ss_pred HHcCCCCeEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 77 l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
+....+..+.|.||+|+|||||++.++....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4455677899999999999999999999973
No 487
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.31 E-value=0.012 Score=56.33 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+-|+|++|+||||++..+.+..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 355679999999999999999998876
No 488
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.31 E-value=0.0015 Score=53.37 Aligned_cols=27 Identities=37% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+..+.|.||+|+|||||.+.++...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345579999999999999999999875
No 489
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.31 E-value=0.0022 Score=45.80 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 025762 84 HMLFYGPPGTGKTTTALAIAH 104 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~ 104 (248)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999998853
No 490
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.29 E-value=0.0029 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+++.|++|+|||+|+..+...-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999997643
No 491
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.29 E-value=0.0013 Score=53.77 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
+..+.|.||+|+|||||++.|+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4479999999999999999998765
No 492
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.29 E-value=0.0028 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.|+|.|++|+|||+|+..+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 493
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.29 E-value=0.0028 Score=44.95 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
-.+|+||.|+|||++..++.-.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999998773
No 494
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.28 E-value=0.0028 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+.++...-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 495
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.28 E-value=0.0029 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhc
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (248)
.++++|++|+||||++..++..+.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 496
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.28 E-value=0.0026 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+..|+|+|.+|+||||+++.|++.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34469999999999999999999987
No 497
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.27 E-value=0.011 Score=50.96 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHH
Q 025762 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102 (248)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~l 102 (248)
+|.+++..+. . +.++++.+|+|+|||.....-
T Consensus 29 ~Q~~~i~~il----~--g~d~lv~apTGsGKTl~~~lp 60 (523)
T 1oyw_A 29 GQEEIIDTVL----S--GRDCLVVMPTGGGKSLCYQIP 60 (523)
T ss_dssp THHHHHHHHH----T--TCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----c--CCCEEEECCCCcHHHHHHHHH
Confidence 5666655544 2 348999999999999755433
No 498
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.27 E-value=0.0027 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+.++....
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998764
No 499
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.27 E-value=0.0027 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 025762 84 HMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (248)
.+++.|++|+|||+|+..+...-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998653
No 500
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.26 E-value=0.0045 Score=51.55 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 025762 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (248)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (248)
..+.|.||+|+|||||++.++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999998854
Done!