Query 025763
Match_columns 248
No_of_seqs 137 out of 1071
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogl_Q JAZ1 incomplete degron 7.8 1.6E+02 0.0056 16.4 1.2 15 50-64 5-19 (21)
2 2kvv_A Putative excisionase; D 7.3 1.5E+02 0.005 21.7 1.1 16 10-25 33-48 (78)
3 3ogk_Q JAZ1 incomplete degron 6.0 1.1E+02 0.0037 17.3 -0.2 13 52-64 2-14 (22)
4 1j1v_A Chromosomal replication 5.3 2.2E+02 0.0076 20.7 1.2 30 113-142 35-64 (94)
5 1jb0_B Photosystem I P700 chlo 5.1 8.7E+02 0.03 24.4 5.5 67 59-126 76-157 (740)
6 2ls2_A High affinity copper up 6.0 1.8E+02 0.0063 16.8 0.0 20 107-126 5-24 (26)
7 3ue2_A Poly(U)-binding-splicin 3.8 2.2E+02 0.0074 21.4 0.0 19 47-65 3-21 (118)
8 1ttw_A Secretion chaperone; ch 3.2 3.5E+02 0.012 21.7 0.7 18 9-26 28-45 (138)
9 3pvv_A Chromosomal replication 3.0 4.7E+02 0.016 19.3 1.3 29 113-142 39-67 (101)
10 3h3g_B Parathyroid hormone-rel 2.7 6.4E+02 0.022 14.4 1.3 11 48-59 2-12 (24)
No 1
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=7.75 E-value=1.6e+02 Score=16.41 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhcCCC
Q 025763 50 NQFLLMQRAWQQRPS 64 (248)
Q Consensus 50 ~q~~~~~r~~~~r~~ 64 (248)
.++.+++||+++|.-
T Consensus 5 aRk~SLqRFleKRk~ 19 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKD 19 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 567788999988853
No 2
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=7.31 E-value=1.5e+02 Score=21.74 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=12.6
Q ss_pred CCccccccceEeccCC
Q 025763 10 TKALDGVRGVHVVPHS 25 (248)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (248)
..=+||+|+.+|.|.-
T Consensus 33 ~~WlEGrhyrrvspdG 48 (78)
T 2kvv_A 33 GAWIEGVHFKRVSPSG 48 (78)
T ss_dssp TTCCBTTTEEEECSSS
T ss_pred chhhheeeeEeeCCCC
Confidence 4568999999998643
No 3
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=5.95 E-value=1.1e+02 Score=17.34 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=8.1
Q ss_pred HHHHHHHHhcCCC
Q 025763 52 FLLMQRAWQQRPS 64 (248)
Q Consensus 52 ~~~~~r~~~~r~~ 64 (248)
+.+++||+++|.-
T Consensus 2 k~SLqRFleKRk~ 14 (22)
T 3ogk_Q 2 RASLHRFLEKRKD 14 (26)
T ss_pred chhHHHHHHHHHH
Confidence 3456777777653
No 4
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=5.34 E-value=2.2e+02 Score=20.75 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHhhcchh
Q 025763 113 LVGVGVTSSLYHSSRGKLRKYLRWADYAMI 142 (248)
Q Consensus 113 li~lf~~STlYH~~~~~~r~~lrrlDH~aI 142 (248)
-++||++--+...+-.+.-+.|---||+++
T Consensus 35 qiamyL~r~~t~~Sl~~IG~~fggrdHsTV 64 (94)
T 1j1v_A 35 QMAMALAKELTNHSLPEIGDAFGGRDHTTV 64 (94)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHhCCCCHHHH
Confidence 478888888877654566666722399988
No 5
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 3pcq_B* 2o01_B* 2wsc_B* 2wse_B* 2wsf_B* 3lw5_B*
Probab=5.09 E-value=8.7e+02 Score=24.41 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=49.6
Q ss_pred HhcCCCCCCCcccCCCCCCCHHHHHHHHHHH------------HHH---HHHhcccchhHHHHHHHHHHHHHHHHHHhhh
Q 025763 59 WQQRPSCLRPIRGCIHGDLHLLERVANVLTS------------LPF---IALGLQTPRKNLNMTLYANSLVGVGVTSSLY 123 (248)
Q Consensus 59 ~~~r~~~~~p~~~~~~~~~t~~EeiaN~iTH------------~~~---i~~g~~~~~~~~s~~IYg~sli~lf~~STlY 123 (248)
|-+-|---||+-- .-+|++.++++.|+.|- +++ -..|+.+..+.-..+++++-+..++++..-+
T Consensus 76 Wl~dP~~i~P~Ah-~VWdP~~GQ~~l~a~~~gg~~~~v~It~SG~fq~W~t~Gi~t~~~Ly~~ai~~li~a~l~LfaGwl 154 (740)
T 1jb0_B 76 WVQDPVNTRPIAH-AIWDPQFGKAAVDAFTQAGASNPVDIAYSGVYHWWYTIGMRTNGDLYQGAIFLLILASLALFAGWL 154 (740)
T ss_dssp HHHCTTTCCCEEE-ECCCTTCCHHHHHHHSCTTCSSCEEECCSCHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCcccCCccch-hhcccccchHHhhcccccCCCcceeEecccHhHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777788732 35899999999999543 222 2345556667788889999899999999999
Q ss_pred ccC
Q 025763 124 HSS 126 (248)
Q Consensus 124 H~~ 126 (248)
|.-
T Consensus 155 H~h 157 (740)
T 1jb0_B 155 HLQ 157 (740)
T ss_dssp TTS
T ss_pred hcc
Confidence 975
No 6
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=5.99 E-value=1.8e+02 Score=16.75 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 025763 107 TLYANSLVGVGVTSSLYHSS 126 (248)
Q Consensus 107 ~IYg~sli~lf~~STlYH~~ 126 (248)
.-|..|+++.|+.+.+|-..
T Consensus 5 ~~~v~Sci~ifll~~~YE~L 24 (26)
T 2ls2_A 5 GEMAGAFVAVFLLAMFYEGL 24 (26)
Confidence 34567888888888888543
No 7
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=3.77 E-value=2.2e+02 Score=21.37 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=14.2
Q ss_pred cchhHHHHHHHHHhcCCCC
Q 025763 47 IGANQFLLMQRAWQQRPSC 65 (248)
Q Consensus 47 ~~~~q~~~~~r~~~~r~~~ 65 (248)
+.+.|-..|+++|.++|++
T Consensus 3 ~~~~~~~~~qkl~~~~ps~ 21 (118)
T 3ue2_A 3 GSSARHMVMQKLLRKQEST 21 (118)
T ss_dssp THHHHTTTTHHHHHHHSCC
T ss_pred cchHHHHHHHHhcCCCCCC
Confidence 4556778889998887764
No 8
>1ttw_A Secretion chaperone; chaperone, type III secretion; 2.38A {Yersinia pestis} SCOP: d.198.1.1
Probab=3.20 E-value=3.5e+02 Score=21.72 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.8
Q ss_pred CCCccccccceEeccCCc
Q 025763 9 RTKALDGVRGVHVVPHSP 26 (248)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (248)
.|-.+||-|+||++|++.
T Consensus 28 ~SLtidge~~~HLae~p~ 45 (138)
T 1ttw_A 28 GAVTIDKIWVVHLAPINE 45 (138)
T ss_dssp EEEEETTTEEEEEEECSS
T ss_pred EEEEEcCeeEEEeecCCc
Confidence 456678999999999984
No 9
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=3.01 E-value=4.7e+02 Score=19.28 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHhhcchh
Q 025763 113 LVGVGVTSSLYHSSRGKLRKYLRWADYAMI 142 (248)
Q Consensus 113 li~lf~~STlYH~~~~~~r~~lrrlDH~aI 142 (248)
-++||++--+...+-.+.-+.|- =||+++
T Consensus 39 qiAmYL~r~~t~~Sl~~IG~~fg-RDHsTV 67 (101)
T 3pvv_A 39 QIAMYLCRELTDLSLPKIGQAFG-RDHTTV 67 (101)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHC-CCHHHH
Confidence 57889988887765456777777 799988
No 10
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=2.69 E-value=6.4e+02 Score=14.39 Aligned_cols=11 Identities=27% Similarity=0.144 Sum_probs=5.9
Q ss_pred chhHHHHHHHHH
Q 025763 48 GANQFLLMQRAW 59 (248)
Q Consensus 48 ~~~q~~~~~r~~ 59 (248)
++.|++. +|.|
T Consensus 2 rs~Q~~r-Rr~w 12 (24)
T 3h3g_B 2 KSIQDLR-RRFF 12 (26)
T ss_dssp CCHHHHH-HHHH
T ss_pred ccHHHHH-HHHH
Confidence 4566665 4443
Done!