Query 025763
Match_columns 248
No_of_seqs 137 out of 1071
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 17:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025763.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025763hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1slma1 a.20.1.2 (A:16-80) Str 20.9 12 0.00088 24.6 0.5 10 58-68 54-63 (65)
2 d1su3a1 a.20.1.2 (A:32-98) Fib 20.1 15 0.0011 24.3 0.8 11 57-68 54-64 (67)
3 d1l6ja1 a.20.1.2 (A:29-105) Ge 15.1 23 0.0017 23.7 0.9 11 57-68 64-74 (77)
4 d1eaka1 a.20.1.2 (A:32-107) Ge 12.4 31 0.0022 23.4 0.9 10 58-68 65-74 (76)
5 d1w98b1 a.74.1.1 (B:228-357) G 7.5 92 0.0067 23.0 2.0 33 118-150 58-95 (130)
6 d1jb0b_ f.29.1.1 (B:) Apoprote 4.0 7.2E+02 0.053 22.7 6.3 68 59-127 76-158 (739)
7 d1gula1 a.45.1.1 (A:81-220) Cl 3.6 2.3E+02 0.017 19.0 2.0 23 47-69 106-128 (140)
8 d1rkla_ f.23.30.1 (A:) Oligosa 3.2 3.8E+02 0.028 15.0 2.3 20 104-126 9-28 (36)
9 d2e74h1 f.23.27.1 (H:3-29) Pet 3.2 3.3E+02 0.024 14.3 1.9 9 180-188 3-11 (27)
10 d2hf5a1 a.39.1.5 (A:81-113) Tr 3.0 2.6E+02 0.019 15.4 1.4 11 129-139 4-14 (33)
No 1
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=20.88 E-value=12 Score=24.61 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=7.3
Q ss_pred HHhcCCCCCCC
Q 025763 58 AWQQRPSCLRP 68 (248)
Q Consensus 58 ~~~~r~~~~~p 68 (248)
.| ++|+|+.|
T Consensus 54 ~M-~~PRCGvp 63 (65)
T d1slma1 54 VM-RKPRCGVP 63 (65)
T ss_dssp HT-TSCBCSSC
T ss_pred HH-CcCCCCCC
Confidence 35 77888876
No 2
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.10 E-value=15 Score=24.26 Aligned_cols=11 Identities=27% Similarity=0.754 Sum_probs=7.7
Q ss_pred HHHhcCCCCCCC
Q 025763 57 RAWQQRPSCLRP 68 (248)
Q Consensus 57 r~~~~r~~~~~p 68 (248)
+.| ++|||+.|
T Consensus 54 ~~M-~~PRCGvp 64 (67)
T d1su3a1 54 KVM-KQPRCGVP 64 (67)
T ss_dssp HHH-TSCBCSSC
T ss_pred HHH-CCCCCCCC
Confidence 345 67888877
No 3
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.06 E-value=23 Score=23.65 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=7.9
Q ss_pred HHHhcCCCCCCC
Q 025763 57 RAWQQRPSCLRP 68 (248)
Q Consensus 57 r~~~~r~~~~~p 68 (248)
+.| ++|+|+.|
T Consensus 64 ~~M-~~pRCG~p 74 (77)
T d1l6ja1 64 KAM-RTPRCGVP 74 (77)
T ss_dssp HHH-TSCBCSSC
T ss_pred HHH-ccCCCCCC
Confidence 345 68888877
No 4
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.42 E-value=31 Score=23.42 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=7.1
Q ss_pred HHhcCCCCCCC
Q 025763 58 AWQQRPSCLRP 68 (248)
Q Consensus 58 ~~~~r~~~~~p 68 (248)
.| ++|+|+.|
T Consensus 65 ~m-~~pRCGvp 74 (76)
T d1eaka1 65 TM-RKPRCGNP 74 (76)
T ss_dssp HH-TSCBCSSC
T ss_pred HH-ccCCCCCC
Confidence 35 67888876
No 5
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.52 E-value=92 Score=22.99 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHhhhccCchhHHHHHHHhhcchh---c--hHHHHHH
Q 025763 118 VTSSLYHSSRGKLRKYLRWADYAMI---A--TATVCLS 150 (248)
Q Consensus 118 ~~STlYH~~~~~~r~~lrrlDH~aI---A--YTP~~l~ 150 (248)
.+|++||....+.-..---+|...| + -+||+.+
T Consensus 58 AAaAl~h~~~~e~~~kvSGl~w~~l~~Cv~WM~PF~~v 95 (130)
T d1w98b1 58 AASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMV 95 (130)
T ss_dssp HHHHHHHTSCHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 6789999875444333344677777 2 7888765
No 6
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]}
Probab=4.01 E-value=7.2e+02 Score=22.72 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=49.1
Q ss_pred HhcCCCCCCCcccCCCCCCCHHHHHHHHHHH------------HHH---HHHhcccchhHHHHHHHHHHHHHHHHHHhhh
Q 025763 59 WQQRPSCLRPIRGCIHGDLHLLERVANVLTS------------LPF---IALGLQTPRKNLNMTLYANSLVGVGVTSSLY 123 (248)
Q Consensus 59 ~~~r~~~~~p~~~~~~~~~t~~EeiaN~iTH------------~~~---i~~g~~~~~~~~s~~IYg~sli~lf~~STlY 123 (248)
|=+-|--.+|+. -.-+|++.++++.|+-+- +++ -..|+.+..+.-...+++.-|..+++...-+
T Consensus 76 Wl~dP~~v~P~A-~~VWdP~~GQ~~lna~~~gG~~~~v~It~SG~fq~W~a~Gi~t~~~Ly~~ai~~lila~l~L~aGw~ 154 (739)
T d1jb0b_ 76 WVQDPVNTRPIA-HAIWDPQFGKAAVDAFTQAGASNPVDIAYSGVYHWWYTIGMRTNGDLYQGAIFLLILASLALFAGWL 154 (739)
T ss_dssp HHHCTTTCCCEE-EECCCTTCCHHHHHHHSCTTCSSCEEECCSCHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCCcc-ceecccccchHhhhcccccCCcCCeeeecchHhHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666677773 235789999999998552 222 2345556667888888898899999999999
Q ss_pred ccCc
Q 025763 124 HSSR 127 (248)
Q Consensus 124 H~~~ 127 (248)
|.-+
T Consensus 155 H~h~ 158 (739)
T d1jb0b_ 155 HLQP 158 (739)
T ss_dssp TTSG
T ss_pred hccc
Confidence 9863
No 7
>d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}
Probab=3.60 E-value=2.3e+02 Score=19.00 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=18.2
Q ss_pred cchhHHHHHHHHHhcCCCCCCCc
Q 025763 47 IGANQFLLMQRAWQQRPSCLRPI 69 (248)
Q Consensus 47 ~~~~q~~~~~r~~~~r~~~~~p~ 69 (248)
++-.||..++++++++++..+|.
T Consensus 106 ~rv~~~P~ik~yl~~~~~~~~p~ 128 (140)
T d1gula1 106 VKLSNIPTIKRFLEPGSKKKPPP 128 (140)
T ss_dssp HHHTTSHHHHHHHSTTSSCCCCC
T ss_pred HHHHhCHHHHHHHcCCcccCCCC
Confidence 77788888888988887766665
No 8
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.24 E-value=3.8e+02 Score=15.03 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC
Q 025763 104 LNMTLYANSLVGVGVTSSLYHSS 126 (248)
Q Consensus 104 ~s~~IYg~sli~lf~~STlYH~~ 126 (248)
--..+||+.|..|-+ +||..
T Consensus 9 ~~~i~fgi~mmtliv---iyh~~ 28 (36)
T d1rkla_ 9 SLAITFGIVMMTLIV---IYHAV 28 (36)
T ss_dssp HHHHHHHHHHHHHHH---HHHHH
T ss_pred cEEeehhHHHHHHHH---HHhhh
Confidence 345678888776654 57764
No 9
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.17 E-value=3.3e+02 Score=14.30 Aligned_cols=9 Identities=11% Similarity=0.172 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 025763 180 HTGMMEVAF 188 (248)
Q Consensus 180 ~mGW~~v~~ 188 (248)
.+||+.+++
T Consensus 3 ~lgwv~llv 11 (27)
T d2e74h1 3 VLGWVALLV 11 (27)
T ss_dssp HHHHHHHHH
T ss_pred chhHhHHHH
Confidence 456665543
No 10
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=2.96 E-value=2.6e+02 Score=15.36 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=8.2
Q ss_pred hHHHHHHHhhc
Q 025763 129 KLRKYLRWADY 139 (248)
Q Consensus 129 ~~r~~lrrlDH 139 (248)
..|..||.+|.
T Consensus 4 el~eAF~~FDk 14 (33)
T d2hf5a1 4 EIREAFRVFDK 14 (33)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhCC
Confidence 46788888884
Done!