BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025764
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OPO|A Chain A, The Structure Of Carnation Mottle Virus
 pdb|1OPO|B Chain B, The Structure Of Carnation Mottle Virus
 pdb|1OPO|C Chain C, The Structure Of Carnation Mottle Virus
          Length = 348

 Score = 31.2 bits (69), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 27  FLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKA 86
           F+  ++ LS PTKT +    SN K S        ++N + L+  ++ AG+ C+   +++ 
Sbjct: 232 FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCI---IVRG 288

Query: 87  GLAGSQANP-LVSDLESGGVTGSEGADLGFSKWLENIKGK 125
            + G    P L+    SG V       +   + +  ++G+
Sbjct: 289 TVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQ 328


>pdb|3BE5|A Chain A, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
           Periplasmic Siderophore Binding Protein
 pdb|3BE5|B Chain B, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
           Periplasmic Siderophore Binding Protein
 pdb|3BE5|C Chain C, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
           Periplasmic Siderophore Binding Protein
 pdb|3BE5|D Chain D, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
           Periplasmic Siderophore Binding Protein
 pdb|3BE6|A Chain A, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
           Periplasmic Siderophore Binding Protein
 pdb|3BE6|B Chain B, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
           Periplasmic Siderophore Binding Protein
 pdb|3BE6|C Chain C, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
           Periplasmic Siderophore Binding Protein
 pdb|3BE6|D Chain D, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
           Periplasmic Siderophore Binding Protein
          Length = 297

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 14/98 (14%)

Query: 54  KKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGL----AGSQANPLVSDLESGGVTGSE 109
           K  L +  I  S+++A     G++ V ++    G     AG +  PL+  +  GG     
Sbjct: 155 KATLDSQKITVSVIQAN---QGKINVXHSYHSLGRVLRDAGFRFPPLIESIPEGGRXDVS 211

Query: 110 G-------ADLGFSKWLENIKGKPDKEAADKRKLVSKW 140
                   AD  F+ W  +  GKP  E A   K+   W
Sbjct: 212 AERLPELDADFVFATWRGDTGGKPQDELATXEKVXPGW 249


>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
           Ubiquitin-Activating Enzyme
 pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
           Ubiquitin-Activating Enzyme
 pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
           Ubiquitin-Activating Enzyme
          Length = 276

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 194 HGESVCCNNVRALFDELPTPHLVVEITPFPAGP 226
           H  +  CNN+R L    P   L     PF +GP
Sbjct: 98  HWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGP 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,318,036
Number of Sequences: 62578
Number of extensions: 282614
Number of successful extensions: 657
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 6
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)