BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025764
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B4NP88|NO66_DROWI Bifunctional lysine-specific demethylase and histidyl-hydroxylase
           NO66 OS=Drosophila willistoni GN=GK15670 PE=3 SV=1
          Length = 767

 Score = 31.6 bits (70), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 152 YRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRR 190
           +R  S  EGRR+L  + + +  DD F D      CQ++R
Sbjct: 320 HRQNSIEEGRRILSWVLNPIKPDDFFKDFWEKNACQVQR 358


>sp|Q9Q6X7|CAPSD_CARMS Capsid protein OS=Carnation mottle virus (isolate China/Shanghai)
           GN=ORF4 PE=3 SV=1
          Length = 348

 Score = 31.6 bits (70), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 27  FLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKA 86
           F+  ++ LS PTKT +    SN K S        ++N + L+  ++ AG+ C+   +++ 
Sbjct: 232 FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCI---IVRG 288

Query: 87  GLAGSQANP-LVSDLESGGVTGSEGADLGFSKWLENIKGK 125
            + G    P L+    SG V       +   + +  ++G+
Sbjct: 289 TVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQ 328


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,124,399
Number of Sequences: 539616
Number of extensions: 3741545
Number of successful extensions: 7995
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7990
Number of HSP's gapped (non-prelim): 11
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)