Query 025764
Match_columns 248
No_of_seqs 12 out of 14
Neff 1.5
Searched_HMMs 46136
Date Fri Mar 29 09:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00823 phhB pterin-4-alpha-c 97.7 0.00021 4.7E-09 53.6 7.2 87 128-242 9-96 (97)
2 PF01329 Pterin_4a: Pterin 4 a 97.6 0.00011 2.4E-09 54.9 5.3 88 127-242 7-94 (95)
3 cd00913 PCD_DCoH_subfamily_a P 97.5 0.00036 7.9E-09 50.3 5.7 73 140-240 2-75 (76)
4 cd00914 PCD_DCoH_subfamily_b P 97.4 0.00048 1E-08 49.8 5.5 67 146-240 9-75 (76)
5 cd00488 PCD_DCoH PCD_DCoH: The 97.3 0.00059 1.3E-08 48.8 5.7 69 145-241 7-75 (75)
6 COG2154 Pterin-4a-carbinolamin 68.3 29 0.00062 27.8 6.9 80 137-244 18-98 (101)
7 KOG4073 Pterin carbinolamine d 54.0 17 0.00037 29.8 3.4 85 131-243 16-101 (104)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 43.1 12 0.00026 33.9 1.1 77 113-224 111-197 (221)
9 PF09949 DUF2183: Uncharacteri 35.7 30 0.00066 26.8 2.2 28 220-247 23-64 (100)
10 cd06257 DnaJ DnaJ domain or J- 32.2 39 0.00085 21.3 1.9 35 133-173 21-55 (55)
11 PF11987 IF-2: Translation-ini 30.2 30 0.00064 26.9 1.3 36 203-238 32-67 (108)
12 TIGR00268 conserved hypothetic 29.0 66 0.0014 27.3 3.3 26 219-244 170-196 (252)
13 cd05699 S1_Rrp5_repeat_hs7 S1_ 28.4 51 0.0011 24.9 2.3 32 215-247 16-53 (72)
14 PF11991 Trp_DMAT: Tryptophan 27.7 76 0.0016 28.4 3.6 82 155-244 264-347 (361)
15 COG2969 SspB Stringent starvat 27.3 31 0.00068 30.0 1.1 21 201-221 11-35 (155)
16 PF09188 DUF1951: Domain of un 26.4 35 0.00076 29.1 1.2 53 37-89 58-110 (137)
17 PF04548 AIG1: AIG1 family; I 26.3 91 0.002 25.4 3.6 58 184-243 37-112 (212)
18 PF03447 NAD_binding_3: Homose 25.7 67 0.0014 23.5 2.4 45 193-247 41-85 (117)
19 KOG1142 Transcription initiati 25.7 14 0.0003 33.9 -1.4 27 157-189 174-200 (258)
20 KOG0401 Translation initiation 24.9 53 0.0011 34.2 2.4 113 77-210 400-532 (970)
21 smart00271 DnaJ DnaJ molecular 24.4 65 0.0014 20.7 2.0 39 132-175 21-59 (60)
22 TIGR03433 padR_acidobact trans 22.4 62 0.0014 24.0 1.8 40 131-172 50-89 (100)
23 PRK14285 chaperone protein Dna 22.1 69 0.0015 29.1 2.3 35 131-174 22-59 (365)
24 cd01832 SGNH_hydrolase_like_1 21.5 1.1E+02 0.0024 22.9 3.0 25 199-224 90-116 (185)
No 1
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=97.66 E-value=0.00021 Score=53.65 Aligned_cols=87 Identities=22% Similarity=0.400 Sum_probs=70.9
Q ss_pred hhhhhhhchhcccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHh
Q 025764 128 KEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRAL 206 (248)
Q Consensus 128 keaadkrklvskWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRAL 206 (248)
.|.+...+-+..|.-...| .|.|.|.+++-.++..++.+||.+-.+.+|..|-+...+
T Consensus 9 ~ei~~~l~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~--------------------- 67 (97)
T PRK00823 9 EEIAELLPQLPGWTLVGDRDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDWFNVYN--------------------- 67 (97)
T ss_pred HHHHHHhhcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCEEEEcC---------------------
Confidence 3444444444789886555 699999999999999999999999999999988765543
Q ss_pred hhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHH
Q 025764 207 FDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVL 242 (248)
Q Consensus 207 FDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VL 242 (248)
.+.|+++.--+|-||++|+.=|+|++++.
T Consensus 68 -------~V~v~l~Th~~~glT~~D~~lA~~id~~~ 96 (97)
T PRK00823 68 -------RVTVTLTTHDAGGLTENDFILAAKIDALA 96 (97)
T ss_pred -------EEEEEEEeCCCCCCCHHHHHHHHHHHHhh
Confidence 35788988888889999999999999874
No 2
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=97.64 E-value=0.00011 Score=54.90 Aligned_cols=88 Identities=24% Similarity=0.462 Sum_probs=68.9
Q ss_pred chhhhhhhchhcccccCcccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHh
Q 025764 127 DKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRAL 206 (248)
Q Consensus 127 ~keaadkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRAL 206 (248)
+.|.+..-+-...|.-...+.|.|.|+.++-.++..++..||.+-.+-+|.-|-+...+
T Consensus 7 ~~ei~~~L~~l~~W~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~--------------------- 65 (95)
T PF01329_consen 7 EEEIAEALAELPGWKLDGGGRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISLGYN--------------------- 65 (95)
T ss_dssp HHHHHHHHHTSTTSEEETSSEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEEETT---------------------
T ss_pred HHHHHHhhhcCcCCEECCCCcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEecCC---------------------
Confidence 34444444445889888669999999999999999999999999999999888765322
Q ss_pred hhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHH
Q 025764 207 FDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVL 242 (248)
Q Consensus 207 FDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VL 242 (248)
.+.|+|+---+|-||++|+.=|+++++++
T Consensus 66 -------~V~v~l~Th~~~glT~~D~~lA~~id~~~ 94 (95)
T PF01329_consen 66 -------RVTVTLTTHDAGGLTEKDFILAARIDDLA 94 (95)
T ss_dssp -------EEEEEE-BTTTTBBBHHHHHHHHHHHHHH
T ss_pred -------cEEEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999999999886
No 3
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=97.45 E-value=0.00036 Score=50.29 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=61.8
Q ss_pred cccCcc-cceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceEEE
Q 025764 140 WHPTTK-GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVE 218 (248)
Q Consensus 140 WhpTtK-GTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLvvE 218 (248)
|.-... +.|.|.|.+++-+++..++.+||.+-.+.+|..|.+... -.+.|+
T Consensus 2 W~~~~~~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~----------------------------~~V~v~ 53 (76)
T cd00913 2 WELADDGLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGW----------------------------GRVRVT 53 (76)
T ss_pred CcCcCCCCeEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEec----------------------------cEEEEE
Confidence 554443 589999999999999999999999999999998876543 246789
Q ss_pred eeeCCCCCCChhhHHhHHHHHH
Q 025764 219 ITPFPAGPLTEKDYVKAEKLER 240 (248)
Q Consensus 219 ITpFPaGpltd~dy~KAekLE~ 240 (248)
|+.-=+|-||++|+.=|.+++.
T Consensus 54 l~Th~~~glT~~D~~lA~~id~ 75 (76)
T cd00913 54 WWTHSIGGLSENDFIMAAKIDA 75 (76)
T ss_pred EEeCCCCCCCHHHHHHHHHHhc
Confidence 9777778899999999999875
No 4
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=97.37 E-value=0.00048 Score=49.81 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=59.4
Q ss_pred cceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceEEEeeeCCCC
Q 025764 146 GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAG 225 (248)
Q Consensus 146 GTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLvvEITpFPaG 225 (248)
+.|.|.|.+++-+++..++.+||.+-.+.+|..|.+...| .+.|+++.--+|
T Consensus 9 ~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~~~~----------------------------~V~v~l~Thd~~ 60 (76)
T cd00914 9 DAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFNVYN----------------------------KVDITLTTHDAG 60 (76)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCEEEecc----------------------------EEEEEEEeCCCC
Confidence 5799999999999999999999999999999988765544 256889888889
Q ss_pred CCChhhHHhHHHHHH
Q 025764 226 PLTEKDYVKAEKLER 240 (248)
Q Consensus 226 pltd~dy~KAekLE~ 240 (248)
-||++|+.=|.++++
T Consensus 61 glT~~D~~lA~~id~ 75 (76)
T cd00914 61 GLTERDIKLAKFIEK 75 (76)
T ss_pred CcCHHHHHHHHHHhc
Confidence 999999999999875
No 5
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=97.34 E-value=0.00059 Score=48.83 Aligned_cols=69 Identities=25% Similarity=0.416 Sum_probs=60.3
Q ss_pred ccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceEEEeeeCCC
Q 025764 145 KGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPA 224 (248)
Q Consensus 145 KGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLvvEITpFPa 224 (248)
.+.|.|.|..++-.++.+++.+||.+-.+.+|.-|.+...+ .+.|+|+.-.+
T Consensus 7 ~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~----------------------------~V~v~l~Th~~ 58 (75)
T cd00488 7 GDALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISNVYN----------------------------KVTVTLTTHDA 58 (75)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEeee----------------------------EEEEEEEeCCC
Confidence 36799999999999999999999999999999988876433 46799988788
Q ss_pred CCCChhhHHhHHHHHHH
Q 025764 225 GPLTEKDYVKAEKLERV 241 (248)
Q Consensus 225 Gpltd~dy~KAekLE~V 241 (248)
|-||++|+.=|++++++
T Consensus 59 ~glt~~D~~lA~~id~~ 75 (75)
T cd00488 59 GGLTENDFILAAKIDAL 75 (75)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 88999999999999863
No 6
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=68.28 E-value=29 Score=27.82 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=63.6
Q ss_pred hcccccCcc-cceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCce
Q 025764 137 VSKWHPTTK-GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHL 215 (248)
Q Consensus 137 vskWhpTtK-GTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHL 215 (248)
..-|.-... +-|+|.||...-.++--.+..||.+-..-+|--|-..+-+ + +
T Consensus 18 l~gW~l~~~~~~l~r~f~FknF~~a~~F~~~vA~~Ae~~~HHPdi~~~y~----------------~------------V 69 (101)
T COG2154 18 LPGWELADDGAKLTRTFKFKNFKQAIAFVNRVAEIAEKLNHHPDIEVVYN----------------R------------V 69 (101)
T ss_pred CCCCEEecCcceEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCeEEEee----------------e------------E
Confidence 344554443 6899999999999999999999999888888666543321 1 4
Q ss_pred EEEeeeCCCCCCChhhHHhHHHHHHHHhh
Q 025764 216 VVEITPFPAGPLTEKDYVKAEKLERVLRS 244 (248)
Q Consensus 216 vvEITpFPaGpltd~dy~KAekLE~VLrs 244 (248)
.|+.|---+|.|||+|+.-|++++.+-..
T Consensus 70 ~vtltTHdagglT~~D~~lA~~id~~~~~ 98 (101)
T COG2154 70 TVTLTTHDAGGLTDLDFKLAAKIDALAKT 98 (101)
T ss_pred EEEEEEccCCCccHHHHHHHHHHHHHHhh
Confidence 68888999999999999999999987653
No 7
>KOG4073 consensus Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 [Transcription]
Probab=53.97 E-value=17 Score=29.78 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=60.7
Q ss_pred hhhhchhcccccC-cccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhc
Q 025764 131 ADKRKLVSKWHPT-TKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDE 209 (248)
Q Consensus 131 adkrklvskWhpT-tKGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDE 209 (248)
+.--..+-.|.+- ++--+-|.+|+-+-.++--.+..+|..-..-+ -|-|=.-|||-
T Consensus 16 ~ll~~~~agW~l~~~rd~i~kef~fKdF~~a~~FmtrVal~Ae~~~-----------------HHPew~nvynk------ 72 (104)
T KOG4073|consen 16 KLLTLKAAGWDLVEGRDAIFKEFRFKDFNQAFGFMTRVALRAEKLG-----------------HHPEWFNVYNK------ 72 (104)
T ss_pred cchhhhhcCCCcccCccceeeEEEeecHHHHHHHHHHHHHHHHHhc-----------------CCchhheeeee------
Confidence 3333344456653 44578899999999999888888776543333 35555445552
Q ss_pred CCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHh
Q 025764 210 LPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLR 243 (248)
Q Consensus 210 LPtPHLvvEITpFPaGpltd~dy~KAekLE~VLr 243 (248)
.=+|++----|+|||+|..-|+++|.+..
T Consensus 73 -----V~itL~THd~ggLse~Dv~lA~~Ie~~a~ 101 (104)
T KOG4073|consen 73 -----VKITLSTHDIGGLSENDVKLAKFIESLAV 101 (104)
T ss_pred -----eEEEEEecccCCCCHHHHHHHHHHHHHHH
Confidence 34788899999999999999999998754
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.10 E-value=12 Score=33.87 Aligned_cols=77 Identities=30% Similarity=0.510 Sum_probs=51.2
Q ss_pred cchHHHHHHhcCCCchh------hhhhhchhcccccCcccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccc
Q 025764 113 LGFSKWLENIKGKPDKE------AADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGC 186 (248)
Q Consensus 113 LGFSKW~~~i~g~p~ke------aadkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGC 186 (248)
.--+||++.++..-+-+ .-+|-.|++| |--+.+||.+.-|++-. -|++.|.-.||
T Consensus 111 e~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk-------------rqvs~eEg~~kAkel~a------~f~etsak~g~ 171 (221)
T KOG0094|consen 111 ENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK-------------RQVSIEEGERKAKELNA------EFIETSAKAGE 171 (221)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEcccccccch-------------hhhhHHHHHHHHHHhCc------EEEEecccCCC
Confidence 34689999998754433 3456666665 33467899976666532 69999998886
Q ss_pred eeeecccccccccccchHHhhhc----CCCCceEEEeeeCCC
Q 025764 187 QIRRENAHGESVCCNNVRALFDE----LPTPHLVVEITPFPA 224 (248)
Q Consensus 187 qIRREsAHgeSVCCnNVRALFDE----LPtPHLvvEITpFPa 224 (248)
||++||+. ||.+-- +|+++-+.
T Consensus 172 ---------------NVk~lFrrIaa~l~~~~~-~~~~~~~~ 197 (221)
T KOG0094|consen 172 ---------------NVKQLFRRIAAALPGMEV-LEILSKQE 197 (221)
T ss_pred ---------------CHHHHHHHHHHhccCccc-cccccccc
Confidence 77788875 455443 56555543
No 9
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=35.73 E-value=30 Score=26.78 Aligned_cols=28 Identities=50% Similarity=0.896 Sum_probs=22.8
Q ss_pred eeCCCCCCChhhH--------------HhHHHHHHHHhhCCC
Q 025764 220 TPFPAGPLTEKDY--------------VKAEKLERVLRSGPS 247 (248)
Q Consensus 220 TpFPaGpltd~dy--------------~KAekLE~VLrs~~s 247 (248)
.-||+||+--+|| .|-..|+++++.-|.
T Consensus 23 ~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~ 64 (100)
T PF09949_consen 23 NGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPE 64 (100)
T ss_pred cCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCC
Confidence 4589999988888 678889999887663
No 10
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=32.24 E-value=39 Score=21.30 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=20.7
Q ss_pred hhchhcccccCcccceecccccCChhHHHHHHHHHHHhhcC
Q 025764 133 KRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSD 173 (248)
Q Consensus 133 krklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLSd 173 (248)
-++|+.+|||...+.- ....+--..|.+.-.+|+|
T Consensus 21 y~~l~~~~HPD~~~~~------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 21 YRKLALKYHPDKNPDD------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHhcC
Confidence 4789999999876542 2223333445555555554
No 11
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=30.19 E-value=30 Score=26.89 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=29.9
Q ss_pred hHHhhhcCCCCceEEEeeeCCCCCCChhhHHhHHHH
Q 025764 203 VRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKL 238 (248)
Q Consensus 203 VRALFDELPtPHLvvEITpFPaGpltd~dy~KAekL 238 (248)
+++.+.+++++..-+.|.-.=.||+|++|...|+-.
T Consensus 32 i~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~ 67 (108)
T PF11987_consen 32 IKNSLEKLSNDEVKIKIIHAGVGPITESDIELASAS 67 (108)
T ss_dssp HHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhh
Confidence 456678888888888999999999999999999764
No 12
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=28.99 E-value=66 Score=27.25 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.7
Q ss_pred eeeCCCC-CCChhhHHhHHHHHHHHhh
Q 025764 219 ITPFPAG-PLTEKDYVKAEKLERVLRS 244 (248)
Q Consensus 219 ITpFPaG-pltd~dy~KAekLE~VLrs 244 (248)
.|.||-| ++|+....+-|+.|+.||.
T Consensus 170 ~sr~~~g~~it~~~l~~v~~~E~~l~~ 196 (252)
T TIGR00268 170 ASRFPFGREIDEEKLKMVDEAEEVLRN 196 (252)
T ss_pred EeecCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5789988 9999999999999999986
No 13
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.35 E-value=51 Score=24.94 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=25.8
Q ss_pred eEEEeee------CCCCCCChhhHHhHHHHHHHHhhCCC
Q 025764 215 LVVEITP------FPAGPLTEKDYVKAEKLERVLRSGPS 247 (248)
Q Consensus 215 LvvEITp------FPaGpltd~dy~KAekLE~VLrs~~s 247 (248)
++|||-+ .|.|-|+| +|.|...+=+-||-|-.
T Consensus 16 l~v~l~~~~l~a~l~~~HLsD-~~~k~~~~~~klrvG~~ 53 (72)
T cd05699 16 LEVAILPEEIRAFLPTMHLSD-HVSNCPLLWHCLQEGDT 53 (72)
T ss_pred EEEEecCCCcEEEEEccccCC-chhhCHHHHhhhhcCCC
Confidence 5677766 69999999 99999888877777654
No 14
>PF11991 Trp_DMAT: Tryptophan dimethylallyltransferase; InterPro: IPR017795 Proteins in this entry are mostly fungal enzymes involved in secondary metabolite production. Characterised or partially characterised members include several examples of dimethylallyltryptophan synthase, a brevianamide F prenyltransferase, LtxC from lyngbyatoxin biosynthesis, and a probable dimethylallyl tyrosine synthase [, ]. Tryptophan dimethylallyltransferase (2.5.1.34 from EC) catalyses the first step of ergot alkaloid biosynthesis. Ergot alkaloids, which are produced by endophyte fungi, can enhance plant host fitness, but also cause livestock toxicosis to host plants.; GO: 0050364 tryptophan dimethylallyltransferase activity, 0009820 alkaloid metabolic process; PDB: 4E0T_A 4E0U_B 3O2K_A 3O24_A 3I4X_A 3I4Z_A.
Probab=27.71 E-value=76 Score=28.40 Aligned_cols=82 Identities=26% Similarity=0.284 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHHH-HhhcCCCccccccCCccceeeecccccccccccchHHhh-hcCCCCceEEEeeeCCCCCCChhhH
Q 025764 155 PSKSEGRRLLKAIA-SLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALF-DELPTPHLVVEITPFPAGPLTEKDY 232 (248)
Q Consensus 155 pSk~EGrRlLkaIa-slLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALF-DELPtPHLvvEITpFPaGpltd~dy 232 (248)
|...||.++|+++- .||...+.+.+ -.-+.=.+...|..+-+|.|.---= +.+|.|-+- ||.-....||-
T Consensus 264 p~~~~gL~~Lr~lW~~ll~~~~~~~~---~~~~~~~~~~~~~~~g~~~~fel~pg~~~P~~KvY-----iPv~~Y~~~D~ 335 (361)
T PF11991_consen 264 PETLEGLELLRELWHLLLGLPEGFPD---EDEDLPLRPPPHRTSGLLYNFELRPGSPLPEPKVY-----IPVRHYGRNDL 335 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTT---EE-----SSSSSCTCHHHTT---EEEEEEEETTSSS-EEEEE-----EE-T--TS-HH
T ss_pred chHHHHHHHHHHHHHHHhCCCcCCCC---CccccCCCCCCCCCCceEEEEEEeCCCCCCcceEE-----EeccCCCCCHH
Confidence 56789999999999 88877555541 1112223444566665666531100 123333222 46666678999
Q ss_pred HhHHHHHHHHhh
Q 025764 233 VKAEKLERVLRS 244 (248)
Q Consensus 233 ~KAekLE~VLrs 244 (248)
.-|+.|++++++
T Consensus 336 ~ia~~l~~f~~~ 347 (361)
T PF11991_consen 336 QIAEGLTEFFEK 347 (361)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 15
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=27.32 E-value=31 Score=29.95 Aligned_cols=21 Identities=52% Similarity=0.740 Sum_probs=15.5
Q ss_pred cchHHhhhcC----CCCceEEEeee
Q 025764 201 NNVRALFDEL----PTPHLVVEITP 221 (248)
Q Consensus 201 nNVRALFDEL----PtPHLvvEITp 221 (248)
|=+||++|-| =||||+|..|-
T Consensus 11 YLlRA~yeWl~DN~~TPhlvVd~t~ 35 (155)
T COG2969 11 YLLRALYEWLLDNQLTPHLVVDVTL 35 (155)
T ss_pred hHHHHHHHHHhcCCCCceEEEEccc
Confidence 4567877544 59999999873
No 16
>PF09188 DUF1951: Domain of unknown function (DUF1951); InterPro: IPR015271 Members of this family of Mycoplasma hypothetical proteins adopt a multi-helical structure that contains a buried central helix. Their function has not, as yet, been determined. ; PDB: 1TM9_A.
Probab=26.42 E-value=35 Score=29.11 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=30.9
Q ss_pred chhhhhhhhhcCCchhhhhhhccccccccccccchhhhhhHHHHHHHHHhhcc
Q 025764 37 PTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLA 89 (248)
Q Consensus 37 p~~t~~~l~f~~~~~~~~~~~~~~~~~ASLlE~PvLWagRlCi~YALlk~Gla 89 (248)
|+++--.-+|-|+-.-..+..+.+.-.||+.-+----+--+|+||-|.|-|+-
T Consensus 58 ~~q~~~~k~~inn~~T~~tv~~~~q~v~S~Fstn~e~~~~FC~~YfLy~~~F~ 110 (137)
T PF09188_consen 58 PTQHEIRKFAINNIKTLSTVGEEGQYVASLFSTNKEIAIIFCLYYFLYHFSFL 110 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SS---STHHHHS-HHHHHHHHHHHHHHHTT-S
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCchHHHHHHHHHHHHHhhcc
Confidence 44444443443333333455667777889888776677889999999999874
No 17
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=26.31 E-value=91 Score=25.42 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=36.1
Q ss_pred ccceeeecccccccccccch------------------HHhhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHh
Q 025764 184 KGCQIRRENAHGESVCCNNV------------------RALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLR 243 (248)
Q Consensus 184 KGCqIRREsAHgeSVCCnNV------------------RALFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLr 243 (248)
..|+..+....|..|.=.+- +++.-..|.||+++=+ +|.+.+|+.|-.-.+.|..++-
T Consensus 37 ~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llV--i~~~r~t~~~~~~l~~l~~~FG 112 (212)
T PF04548_consen 37 QECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLV--IPLGRFTEEDREVLELLQEIFG 112 (212)
T ss_dssp SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEE--EETTB-SHHHHHHHHHHHHHHC
T ss_pred cccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEE--EecCcchHHHHHHHHHHHHHcc
Confidence 45666666666665532222 2233357899998844 7888999999888888887763
No 18
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=25.74 E-value=67 Score=23.47 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=30.3
Q ss_pred cccccccccchHHhhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHhhCCC
Q 025764 193 AHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPS 247 (248)
Q Consensus 193 AHgeSVCCnNVRALFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLrs~~s 247 (248)
..+....+.++.++++.++ +.+|||.|+- ++. ++-++++|++|-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~-~dvvVE~t~~--------~~~-~~~~~~~L~~G~~ 85 (117)
T PF03447_consen 41 SFPDEAFTTDLEELIDDPD-IDVVVECTSS--------EAV-AEYYEKALERGKH 85 (117)
T ss_dssp HHTHSCEESSHHHHHTHTT--SEEEE-SSC--------HHH-HHHHHHHHHTTCE
T ss_pred hcccccccCCHHHHhcCcC-CCEEEECCCc--------hHH-HHHHHHHHHCCCe
Confidence 3455677889999988764 9999999642 333 4667888887743
No 19
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.69 E-value=14 Score=33.94 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHhhcCCCccccccCCccceee
Q 025764 157 KSEGRRLLKAIASLLSDDDHFTDATSHKGCQIR 189 (248)
Q Consensus 157 k~EGrRlLkaIaslLSdDDhFvdatsHKGCqIR 189 (248)
..|..++|-+|| |.|||-.+|.+|..-
T Consensus 174 D~dVedlLleiA------DdFV~sii~~sC~LA 200 (258)
T KOG1142|consen 174 DDDVEDLLLEIA------DDFVSSIIHRSCKLA 200 (258)
T ss_pred cHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 467888998888 789999999999873
No 20
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]
Probab=24.94 E-value=53 Score=34.19 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCC--------------CCccchHHHHHHhcCCCchhhhhhhchhccccc
Q 025764 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSE--------------GADLGFSKWLENIKGKPDKEAADKRKLVSKWHP 142 (248)
Q Consensus 77 lCi~YALlk~GlaGS~~nP~vS~Le~g~~~~~~--------------~~DLGFSKW~~~i~g~p~keaadkrklvskWhp 142 (248)
.|..||.+...++| + +..++++.++..... ..| .+.+=....-+.++.|.. .-.-.-+-.+
T Consensus 400 f~~~yA~lc~~l~~-~--~~~~~~~~~~~~~~fr~~lL~rcq~~fe~~~~-~~~~~~~~~~~~~~~e~~-le~~k~~~~~ 474 (970)
T KOG0401|consen 400 FCAMYARLCFDLEG-P--PSEPELDMGGDEINFRRLLLNRCQKEFEGEDD-KIADEYSEAEEPDELEEE-LEEEKYILRR 474 (970)
T ss_pred cchhcchhcccccC-C--ccCCCcCCCCCcccHHHHHHHHhHHHhhcccH-HHHHHhhhhcCchhHHHH-HHhccceecC
Confidence 58889988888888 4 555555554322110 011 122222222223331211 1111235678
Q ss_pred CcccceecccccCChhHH-HHHHHHHHHhhcCCCccccccCCccceeeecccccccccc-----cchHHhhhcC
Q 025764 143 TTKGTLRRNYRVPSKSEG-RRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCC-----NNVRALFDEL 210 (248)
Q Consensus 143 TtKGTLrRnYRvpSk~EG-rRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCC-----nNVRALFDEL 210 (248)
.|.|+++-.+..-.+..+ ..|.-+|...|.++|- -|.|++|| .++-+.+|.-
T Consensus 475 rtlgn~~~ig~l~~~~ml~e~i~~~~v~~Ll~~~~----------------~~ee~ie~lc~f~~tig~~lD~~ 532 (970)
T KOG0401|consen 475 RTLGNFRFIGELFKLKMLTEKIVHACVQKLLSDDQ----------------PSEESIECLCRFLTTIGKKLDFS 532 (970)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------------ccchhhhhHHhhhhccccccccc
Confidence 888888888887776665 5678888888888876 56777777 3444444443
No 21
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=24.42 E-value=65 Score=20.70 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=25.6
Q ss_pred hhhchhcccccCcccceecccccCChhHHHHHHHHHHHhhcCCC
Q 025764 132 DKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDD 175 (248)
Q Consensus 132 dkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLSdDD 175 (248)
.-++|+.+|||...+.- -+...+--+.|++.-.+|+|++
T Consensus 21 ay~~l~~~~HPD~~~~~-----~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 21 AYRKLALKYHPDKNPGD-----KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred HHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHHHcCCC
Confidence 34788899999876543 2334455566666667777754
No 22
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=22.35 E-value=62 Score=23.97 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=29.0
Q ss_pred hhhhchhcccccCcccceecccccCChhHHHHHHHHHHHhhc
Q 025764 131 ADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLS 172 (248)
Q Consensus 131 adkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLS 172 (248)
..++-+.+.|.+...|--|+.|++ .++||.+|+++.....
T Consensus 50 e~~GlI~~~~~~~~~~~~rk~y~i--T~~Gr~~l~~~~~~~~ 89 (100)
T TIGR03433 50 ERRGWIAAEWGESENNRRAKFYRL--TAAGRKQLAAETESWA 89 (100)
T ss_pred HHCCCeEEEeeecCCCCCceEEEE--CHHHHHHHHHHHHHHH
Confidence 344556778998887766777776 5789999888765543
No 23
>PRK14285 chaperone protein DnaJ; Provisional
Probab=22.14 E-value=69 Score=29.13 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=22.7
Q ss_pred hhhhchhcccccCcccceecccccCChhHHHHHHH---HHHHhhcCC
Q 025764 131 ADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLK---AIASLLSDD 174 (248)
Q Consensus 131 adkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLk---aIaslLSdD 174 (248)
..-|||+.||||-.- +...+....++ +.-.+|||+
T Consensus 22 ~ayr~la~~~HPD~~---------~~~~~a~~~f~~i~~Ay~vL~d~ 59 (365)
T PRK14285 22 KAYRKIAIKYHPDKN---------KGNKEAESIFKEATEAYEVLIDD 59 (365)
T ss_pred HHHHHHHHHHCCCCC---------CCCHHHHHHHHHHHHHHHHHcCc
Confidence 345899999999853 22334444444 445789986
No 24
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=21.50 E-value=1.1e+02 Score=22.94 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=17.5
Q ss_pred cccchHHhhhcC--CCCceEEEeeeCCC
Q 025764 199 CCNNVRALFDEL--PTPHLVVEITPFPA 224 (248)
Q Consensus 199 CCnNVRALFDEL--PtPHLvvEITpFPa 224 (248)
.-.|++.+++++ |...+++ ++++|-
T Consensus 90 ~~~~~~~~i~~i~~~~~~vil-~~~~~~ 116 (185)
T cd01832 90 YRADLEEAVRRLRAAGARVVV-FTIPDP 116 (185)
T ss_pred HHHHHHHHHHHHHhCCCEEEE-ecCCCc
Confidence 456888888888 5555555 777766
Done!