Query 025764
Match_columns 248
No_of_seqs 12 out of 14
Neff 1.5
Searched_HMMs 29240
Date Mon Mar 25 17:06:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebb_A Pterin-4-alpha-carbinol 97.1 0.0014 4.8E-08 49.1 6.7 88 129-244 7-94 (101)
2 1ru0_A DCOH-like protein dcohm 96.9 0.0019 6.5E-08 48.6 6.2 89 127-243 12-103 (105)
3 2v6u_A Pterin-4A-carbinolamine 96.9 0.0021 7.1E-08 48.3 6.0 90 127-244 11-101 (104)
4 3jst_A Putative pterin-4-alpha 96.7 0.0024 8.2E-08 47.3 5.5 88 127-242 8-96 (97)
5 3hxa_A Pterin-4-alpha-carbinol 96.7 0.0035 1.2E-07 47.2 6.3 90 127-244 10-102 (104)
6 1usm_A DCOH, hepatocyte nuclea 96.7 0.0018 6.3E-08 46.4 4.5 75 139-242 2-78 (80)
7 2ktl_A Tyrosyl-tRNA synthetase 28.6 24 0.00083 28.8 1.8 18 153-170 61-78 (164)
8 2cx6_A Hypothetical protein YH 23.5 2E+02 0.0069 20.4 5.9 54 162-243 16-74 (90)
9 2ywi_A Hypothetical conserved 23.4 55 0.0019 23.4 2.7 53 139-191 129-193 (196)
10 1vk8_A Hypothetical protein TM 23.0 82 0.0028 23.8 3.7 33 212-245 13-45 (106)
11 2vxt_I Interleukin-18; FAB, IL 22.7 20 0.0007 29.7 0.3 21 197-217 73-93 (157)
12 2ywb_A GMP synthase [glutamine 22.3 32 0.0011 30.7 1.6 42 202-243 361-410 (503)
13 1hdj_A Human HSP40, HDJ-1; mol 20.9 81 0.0028 20.9 3.0 36 132-174 23-58 (77)
No 1
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=97.07 E-value=0.0014 Score=49.13 Aligned_cols=88 Identities=17% Similarity=0.296 Sum_probs=69.8
Q ss_pred hhhhhhchhcccccCcccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhh
Q 025764 129 EAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFD 208 (248)
Q Consensus 129 eaadkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFD 208 (248)
|.+..-+-+..|.....+.|+|.|+.++-.++..++.+||.+-...||.-|-+...+
T Consensus 7 ei~~~L~~l~gW~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~----------------------- 63 (101)
T 2ebb_A 7 EVQALLEKADGWKLADERWIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISIDYK----------------------- 63 (101)
T ss_dssp HHHHHHHTSTTCEEETTTEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEEETT-----------------------
T ss_pred HHHHHhhcCCCCeECCCCCEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCC-----------------------
Confidence 333333334578876443499999999999999999999999999999887654322
Q ss_pred cCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHhh
Q 025764 209 ELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRS 244 (248)
Q Consensus 209 ELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLrs 244 (248)
.+.|+++.--+|-||++|+.=|.|++.+...
T Consensus 64 -----~V~v~l~THd~gGlt~~D~~lA~~id~l~~~ 94 (101)
T 2ebb_A 64 -----LITVKLSSWRAKGLTKLDFDLAKQYDEVYNQ 94 (101)
T ss_dssp -----EEEEEECBTTTTBCCHHHHHHHHHHHHHHHH
T ss_pred -----EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3678888888999999999999999998753
No 2
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=96.92 E-value=0.0019 Score=48.57 Aligned_cols=89 Identities=12% Similarity=0.206 Sum_probs=70.2
Q ss_pred chhhhhhhchh--cccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccch
Q 025764 127 DKEAADKRKLV--SKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNV 203 (248)
Q Consensus 127 ~keaadkrklv--skWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNV 203 (248)
+.|.+..-+-+ ..|.....+ .|+|.|+.++-.++..++.+||.+-...||.-|-+...+
T Consensus 12 ~~ei~~~L~~l~~~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~------------------ 73 (105)
T 1ru0_A 12 AEERDQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVYN------------------ 73 (105)
T ss_dssp HHHHHHHHHHHHHTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETT------------------
T ss_pred HHHHHHHHHhCCCCCCeEECCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCC------------------
Confidence 34444443333 579876554 799999999999999999999999998898877653221
Q ss_pred HHhhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHh
Q 025764 204 RALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLR 243 (248)
Q Consensus 204 RALFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLr 243 (248)
.+.|+++.--+|-||++|+.=|.|++.+..
T Consensus 74 ----------~V~v~l~THd~gGlt~~D~~lA~~id~l~~ 103 (105)
T 1ru0_A 74 ----------KVQITLTSHDCGGLTKRDVKLAQFIEKAAA 103 (105)
T ss_dssp ----------EEEEEECBTTTTBCBHHHHHHHHHHHHHHT
T ss_pred ----------EEEEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 367888888889999999999999999874
No 3
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=96.86 E-value=0.0021 Score=48.29 Aligned_cols=90 Identities=21% Similarity=0.337 Sum_probs=71.0
Q ss_pred chhhhhhhchhcccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHH
Q 025764 127 DKEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRA 205 (248)
Q Consensus 127 ~keaadkrklvskWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRA 205 (248)
+.|.+..-+-...|.....| .|+|.|+.++-.++..++..||.+-...||.-|-+...+
T Consensus 11 ~~ei~~~L~~l~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~-------------------- 70 (104)
T 2v6u_A 11 SARLLQLHKTVPQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYNVYN-------------------- 70 (104)
T ss_dssp CHHHHHHHTTSTTSEECGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETT--------------------
T ss_pred HHHHHHHhhcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCC--------------------
Confidence 34444444444678876433 799999999999999999999999988899877654322
Q ss_pred hhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHhh
Q 025764 206 LFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRS 244 (248)
Q Consensus 206 LFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLrs 244 (248)
.+.|+++.--+|-||++|+.=|.+++.+...
T Consensus 71 --------~V~v~l~THd~gGlT~~D~~lA~~id~l~~~ 101 (104)
T 2v6u_A 71 --------TVDVELSTHDAAGLTEKDFALAKFMDDAAKN 101 (104)
T ss_dssp --------EEEEEECBGGGTBCCHHHHHHHHHHHHHHHT
T ss_pred --------EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3678888888889999999999999998754
No 4
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=96.74 E-value=0.0024 Score=47.30 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=69.1
Q ss_pred chhhhhhhchhcccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHH
Q 025764 127 DKEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRA 205 (248)
Q Consensus 127 ~keaadkrklvskWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRA 205 (248)
+.|.+..-+-...|.-...| .|+|.|+.++-.++..++..||.+-...+|.-|-+..-+
T Consensus 8 ~~ei~~~L~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~~~y~-------------------- 67 (97)
T 3jst_A 8 ESEMNEALRALDGWQKVDGREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWFNAYN-------------------- 67 (97)
T ss_dssp HHHHHHHHHTSTTCEECTTSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETT--------------------
T ss_pred HHHHHHHhhcCCCCeEeCCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeCC--------------------
Confidence 34444443444789877533 899999999999999999999999988888777643211
Q ss_pred hhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHH
Q 025764 206 LFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVL 242 (248)
Q Consensus 206 LFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VL 242 (248)
.+.|++|.--+|-||++|+.=|.|++.+.
T Consensus 68 --------~V~v~l~THd~gGlT~~D~~lA~~id~la 96 (97)
T 3jst_A 68 --------RVDVTLATHSENGVTELDIKMARKMNAIA 96 (97)
T ss_dssp --------EEEEEECBGGGTBCCHHHHHHHHHHHHHH
T ss_pred --------EEEEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 36788888888889999999999999874
No 5
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=96.71 E-value=0.0035 Score=47.18 Aligned_cols=90 Identities=13% Similarity=0.183 Sum_probs=70.7
Q ss_pred chhhhhhhchh--cccccCc-ccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccch
Q 025764 127 DKEAADKRKLV--SKWHPTT-KGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNV 203 (248)
Q Consensus 127 ~keaadkrklv--skWhpTt-KGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNV 203 (248)
+.|.+..-+-. ..|.-.. .+.|+|.|+.++-.++..++.+||.+-...+|.-|-+..-
T Consensus 10 ~~ei~~~L~~L~~~gW~~~~~~~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~~y------------------- 70 (104)
T 3hxa_A 10 AEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFNVY------------------- 70 (104)
T ss_dssp HHHHHHHSHHHHTTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEET-------------------
T ss_pred HHHHHHHHhhCCCCCCEEecCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeC-------------------
Confidence 34444443333 5798764 3589999999999999999999999998888877764321
Q ss_pred HHhhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHhh
Q 025764 204 RALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRS 244 (248)
Q Consensus 204 RALFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLrs 244 (248)
-.+.|+++.--+|-||++|+.=|.|++.+..+
T Consensus 71 ---------~~V~v~l~THd~gGlT~~D~~lA~~id~la~~ 102 (104)
T 3hxa_A 71 ---------NKVHITLSTHECAGLSERDINLASFIEQVAVS 102 (104)
T ss_dssp ---------TEEEEEECBTTTTBCCHHHHHHHHHHHHHHHH
T ss_pred ---------CEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 14678888888899999999999999998764
No 6
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=96.70 E-value=0.0018 Score=46.36 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=61.6
Q ss_pred ccccCccc--ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceE
Q 025764 139 KWHPTTKG--TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLV 216 (248)
Q Consensus 139 kWhpTtKG--TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLv 216 (248)
.|... .| .|+|.|+.++-.++..++.+||.+-...||.-|-+...+ .+.
T Consensus 2 gW~~~-~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~----------------------------~V~ 52 (80)
T 1usm_A 2 DWEER-ENLKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWG----------------------------RVT 52 (80)
T ss_dssp CCEEC----CCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETT----------------------------EEE
T ss_pred CCeEe-CCccEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCC----------------------------EEE
Confidence 36543 34 799999999999999999999999998899877654322 367
Q ss_pred EEeeeCCCCCCChhhHHhHHHHHHHH
Q 025764 217 VEITPFPAGPLTEKDYVKAEKLERVL 242 (248)
Q Consensus 217 vEITpFPaGpltd~dy~KAekLE~VL 242 (248)
|+++.--+|-||++|+.-|.+++.+.
T Consensus 53 v~l~THd~gGlt~~D~~lA~~id~l~ 78 (80)
T 1usm_A 53 VEWWTHSAGGVTEKDREMARLTDALL 78 (80)
T ss_dssp EEECBTTTTBCCHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 88888888999999999999999875
No 7
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=28.61 E-value=24 Score=28.82 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=13.8
Q ss_pred ccCChhHHHHHHHHHHHh
Q 025764 153 RVPSKSEGRRLLKAIASL 170 (248)
Q Consensus 153 RvpSk~EGrRlLkaIasl 170 (248)
=++||+|+||+++.=+-.
T Consensus 61 La~SKsEARRlI~qGGv~ 78 (164)
T 2ktl_A 61 LVASKSEGQRIINNNGAY 78 (164)
T ss_dssp SCSTHHHHHHHHHHTCEE
T ss_pred cccCHHHHHHHHHhCCEE
Confidence 378999999999864433
No 8
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=23.46 E-value=2e+02 Score=20.37 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcC-----CCCceEEEeeeCCCCCCChhhHHhHH
Q 025764 162 RLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDEL-----PTPHLVVEITPFPAGPLTEKDYVKAE 236 (248)
Q Consensus 162 RlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDEL-----PtPHLvvEITpFPaGpltd~dy~KAe 236 (248)
.++.+|+..|.=.|+|. .|.-||+|-| |.| +++++.-+|. ..-...+
T Consensus 16 ~f~~~~~~~~~~p~~fG----------------------~NlDAL~D~Lt~~~~~~P-~~i~~~~~~~-----~~~~~~~ 67 (90)
T 2cx6_A 16 DFYRDFSQTFGLAKDKV----------------------RDLDSLWDVLMNDVLPLP-LEIEFVHLGE-----KTRRRFG 67 (90)
T ss_dssp HHHHHHHHHTTCCTTSC----------------------SSHHHHHHHHHTTCSCSS-EEEEEESCCH-----HHHHHTH
T ss_pred HHHHHHHHHhCCchhhC----------------------CCHHHHHHHHccCCCCCC-EEEEEEeCch-----hhHHHHH
Confidence 46778888887777773 6999999854 677 7888888872 2112334
Q ss_pred HHHHHHh
Q 025764 237 KLERVLR 243 (248)
Q Consensus 237 kLE~VLr 243 (248)
.|..|++
T Consensus 68 ~ll~vf~ 74 (90)
T 2cx6_A 68 ALILLFD 74 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666654
No 9
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=23.39 E-value=55 Score=23.36 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=35.3
Q ss_pred ccccCc-----ccceecccccC-------ChhHHHHHHHHHHHhhcCCCccccccCCccceeeec
Q 025764 139 KWHPTT-----KGTLRRNYRVP-------SKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRE 191 (248)
Q Consensus 139 kWhpTt-----KGTLrRnYRvp-------Sk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRRE 191 (248)
..-||+ +|.++..+++. .......|.++|..+|....-=...+.-.||.|+..
T Consensus 129 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~ 193 (196)
T 2ywi_A 129 ACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWK 193 (196)
T ss_dssp CEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCC
T ss_pred CCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeec
Confidence 345654 68887665422 122335688888888887766666777889999854
No 10
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=22.99 E-value=82 Score=23.84 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=20.4
Q ss_pred CCceEEEeeeCCCCCCChhhHHhHHHHHHHHhhC
Q 025764 212 TPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSG 245 (248)
Q Consensus 212 tPHLvvEITpFPaGpltd~dy~KAekLE~VLrs~ 245 (248)
-|+.+|||+.+|-|.= +.-+.--.+..++||.+
T Consensus 13 ~~~~iv~~sv~Plg~~-~svs~~Va~~i~vi~~s 45 (106)
T 1vk8_A 13 MPKVTVSIKVVPAVED-GRLHEVIDRAIEKISSW 45 (106)
T ss_dssp -CCEEEEEEEEESSCG-GGHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEEEEeCCCC-CchHHHHHHHHHHHHHc
Confidence 4789999999999942 22222223466677653
No 11
>2vxt_I Interleukin-18; FAB, IL-18, secreted, cytokine, autoimmunity, glycoprotein, cells, immunoglobulin domain, immunoglobulin V region; 1.49A {Homo sapiens} PDB: 1j0s_A 3f62_B
Probab=22.69 E-value=20 Score=29.68 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.1
Q ss_pred cccccchHHhhhcCCCCceEE
Q 025764 197 SVCCNNVRALFDELPTPHLVV 217 (248)
Q Consensus 197 SVCCnNVRALFDELPtPHLvv 217 (248)
-|||.|---+|.|+++|+.|=
T Consensus 73 ~vscqnk~V~fkEme~P~~I~ 93 (157)
T 2vxt_I 73 TLSAENKIISFKEMNPPDNIK 93 (157)
T ss_dssp EEECGGGCCEEEECCCCSEES
T ss_pred EEEeCCCEEEeecCCCCCccC
Confidence 589999778899999999763
No 12
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=22.35 E-value=32 Score=30.65 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=33.4
Q ss_pred chHHhhhcCCCCceEEEeeeCCC--------CCCChhhHHhHHHHHHHHh
Q 025764 202 NVRALFDELPTPHLVVEITPFPA--------GPLTEKDYVKAEKLERVLR 243 (248)
Q Consensus 202 NVRALFDELPtPHLvvEITpFPa--------Gpltd~dy~KAekLE~VLr 243 (248)
-||++-.++=.|.-++...|||. |++|++.....++.|.+|+
T Consensus 361 EVr~~a~~~glp~~i~~~~P~~~~~La~R~~g~~t~~~l~~~~~~d~~l~ 410 (503)
T 2ywb_A 361 EVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFT 410 (503)
T ss_dssp HHHHHHHHTTCCHHHHSCCCCCTTGGGGGBSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhheecCCCCCcchhhhccccccHHHHHHHHHHHHHHH
Confidence 47888888888887778888884 8899887777777777765
No 13
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=20.87 E-value=81 Score=20.85 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=23.7
Q ss_pred hhhchhcccccCcccceecccccCChhHHHHHHHHHHHhhcCC
Q 025764 132 DKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDD 174 (248)
Q Consensus 132 dkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLSdD 174 (248)
.-|+|+.+|||-..+. +...|--+.|++.-.+|+|.
T Consensus 23 ayr~l~~~~HPD~~~~-------~~~~~~f~~i~~Ay~~L~d~ 58 (77)
T 1hdj_A 23 AYRRQALRYHPDKNKE-------PGAEEKFKEIAEAYDVLSDP 58 (77)
T ss_dssp HHHHHHHTTCTTTCCC-------TTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHHCCH
Confidence 3578999999986542 23344455666666778775
Done!