Query 025765
Match_columns 248
No_of_seqs 223 out of 1185
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4afl_A P29ING4, inhibitor of g 99.9 2E-25 6.9E-30 172.8 10.8 99 6-111 3-104 (104)
2 1wen_A Inhibitor of growth fam 99.9 3E-23 1E-27 150.3 6.5 66 181-246 5-70 (71)
3 1weu_A Inhibitor of growth fam 99.9 1.2E-22 4.1E-27 153.5 7.1 67 180-246 24-90 (91)
4 2g6q_A Inhibitor of growth pro 99.9 3.4E-23 1.1E-27 146.2 1.0 58 184-241 3-60 (62)
5 2jmi_A Protein YNG1, ING1 homo 99.8 3.9E-22 1.3E-26 150.4 2.6 59 184-242 18-77 (90)
6 1x4i_A Inhibitor of growth pro 99.8 1.8E-22 6.1E-27 145.8 0.1 57 188-244 2-58 (70)
7 3c6w_A P28ING5, inhibitor of g 99.8 3.2E-22 1.1E-26 139.9 1.0 56 186-241 3-58 (59)
8 2vnf_A ING 4, P29ING4, inhibit 99.8 5.2E-22 1.8E-26 139.2 0.9 58 184-241 2-59 (60)
9 1wew_A DNA-binding family prot 99.7 3.1E-18 1.1E-22 125.9 2.7 64 180-244 4-75 (78)
10 2rsd_A E3 SUMO-protein ligase 99.6 4.3E-16 1.5E-20 111.5 2.4 56 186-242 4-66 (68)
11 2k16_A Transcription initiatio 99.6 7.4E-16 2.5E-20 112.0 2.0 58 188-248 14-75 (75)
12 3o70_A PHD finger protein 13; 99.5 5.7E-15 1.9E-19 105.7 2.5 52 186-240 13-66 (68)
13 1wem_A Death associated transc 99.5 3.1E-15 1.1E-19 109.1 0.4 53 187-243 12-72 (76)
14 1we9_A PHD finger family prote 99.5 9.3E-15 3.2E-19 103.0 2.4 53 189-244 3-61 (64)
15 3o7a_A PHD finger protein 13 v 99.5 6.3E-15 2.1E-19 100.0 1.4 47 191-240 3-51 (52)
16 3kqi_A GRC5, PHD finger protei 99.5 5.3E-15 1.8E-19 107.7 -0.1 51 188-241 6-61 (75)
17 1wep_A PHF8; structural genomi 99.4 1.1E-14 3.6E-19 107.1 1.1 50 190-242 10-64 (79)
18 1wee_A PHD finger family prote 99.4 3.2E-14 1.1E-18 102.8 3.1 53 187-242 11-67 (72)
19 1mm2_A MI2-beta; PHD, zinc fin 99.3 2.3E-12 7.8E-17 90.2 4.4 51 191-246 8-61 (61)
20 4gne_A Histone-lysine N-methyl 99.3 1.3E-12 4.4E-17 101.3 3.0 50 189-241 12-62 (107)
21 2lv9_A Histone-lysine N-methyl 99.3 2.6E-12 8.8E-17 98.1 4.5 51 189-242 25-77 (98)
22 3kv5_D JMJC domain-containing 99.3 2.9E-13 9.8E-18 129.7 -1.6 52 187-241 32-88 (488)
23 1xwh_A Autoimmune regulator; P 99.3 2.1E-12 7E-17 91.7 3.1 51 190-245 6-59 (66)
24 2xb1_A Pygopus homolog 2, B-ce 99.2 1.1E-12 3.7E-17 101.5 0.8 47 193-242 4-62 (105)
25 2ri7_A Nucleosome-remodeling f 99.2 4.1E-13 1.4E-17 111.8 -2.0 53 187-242 3-60 (174)
26 2kgg_A Histone demethylase jar 99.2 2.2E-12 7.7E-17 87.4 1.2 44 194-239 5-52 (52)
27 2puy_A PHD finger protein 21A; 99.2 3E-12 1E-16 89.1 1.5 49 192-245 5-56 (60)
28 2yql_A PHD finger protein 21A; 99.2 7.7E-12 2.6E-16 85.9 2.6 45 191-240 8-55 (56)
29 2l5u_A Chromodomain-helicase-D 99.2 9.2E-12 3.1E-16 87.1 2.6 47 190-241 9-58 (61)
30 1f62_A Transcription factor WS 99.2 9.4E-12 3.2E-16 83.7 2.1 44 194-240 2-49 (51)
31 2ku3_A Bromodomain-containing 99.1 5.9E-12 2E-16 90.7 0.8 50 191-243 15-68 (71)
32 2vpb_A Hpygo1, pygopus homolog 99.1 3E-12 1E-16 90.7 -1.0 43 194-239 10-64 (65)
33 3kv4_A PHD finger protein 8; e 99.1 1.7E-12 5.7E-17 123.1 -3.6 50 190-242 3-57 (447)
34 2l43_A N-teminal domain from h 99.1 1.2E-11 4E-16 92.7 0.9 49 192-243 25-77 (88)
35 2e6r_A Jumonji/ARID domain-con 99.1 3.9E-11 1.3E-15 90.6 2.9 49 191-242 15-67 (92)
36 2lri_C Autoimmune regulator; Z 99.1 6.9E-11 2.4E-15 83.9 3.5 46 192-242 12-60 (66)
37 2yt5_A Metal-response element- 99.0 1.5E-10 5.2E-15 81.7 2.6 54 189-245 3-65 (66)
38 1fp0_A KAP-1 corepressor; PHD 99.0 7.2E-10 2.5E-14 82.8 5.6 48 190-242 23-73 (88)
39 3asl_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 80.2 3.2 43 196-241 23-69 (70)
40 2e6s_A E3 ubiquitin-protein li 98.9 1.5E-09 5.2E-14 79.2 3.9 44 194-240 28-76 (77)
41 1wev_A Riken cDNA 1110020M19; 98.8 6.9E-10 2.4E-14 83.0 0.8 52 190-244 14-75 (88)
42 2kwj_A Zinc finger protein DPF 98.7 2.3E-09 7.8E-14 83.7 1.2 49 194-245 60-112 (114)
43 3shb_A E3 ubiquitin-protein li 98.7 8.5E-09 2.9E-13 75.2 3.2 42 196-240 31-76 (77)
44 3ask_A E3 ubiquitin-protein li 98.6 1.8E-08 6.2E-13 87.3 2.7 45 194-241 176-225 (226)
45 3v43_A Histone acetyltransfera 98.6 3.3E-08 1.1E-12 76.8 3.7 44 194-240 63-111 (112)
46 3pur_A Lysine-specific demethy 98.6 1.5E-08 5.2E-13 97.1 2.0 36 203-241 56-94 (528)
47 2ysm_A Myeloid/lymphoid or mix 98.3 1.5E-07 5.2E-12 72.7 1.6 45 194-241 56-104 (111)
48 3lqh_A Histone-lysine N-methyl 98.2 1.9E-07 6.6E-12 78.6 0.7 37 203-242 19-64 (183)
49 2ysm_A Myeloid/lymphoid or mix 98.0 3.6E-06 1.2E-10 64.8 4.6 46 191-239 6-55 (111)
50 2lbm_A Transcriptional regulat 98.0 8.6E-07 2.9E-11 71.7 0.8 46 192-242 63-118 (142)
51 3ql9_A Transcriptional regulat 98.0 4.9E-07 1.7E-11 72.0 -0.9 49 190-243 55-113 (129)
52 2kwj_A Zinc finger protein DPF 98.0 1.3E-06 4.3E-11 68.0 1.0 44 193-239 2-59 (114)
53 3u5n_A E3 ubiquitin-protein li 97.9 3.5E-06 1.2E-10 71.8 2.9 47 192-242 7-55 (207)
54 3v43_A Histone acetyltransfera 97.9 2.4E-06 8.1E-11 66.2 0.6 45 192-239 5-62 (112)
55 3rsn_A SET1/ASH2 histone methy 97.2 0.00022 7.6E-09 59.4 3.6 48 191-241 4-59 (177)
56 4bbq_A Lysine-specific demethy 96.9 0.00045 1.6E-08 53.2 3.2 36 204-242 74-115 (117)
57 1wil_A KIAA1045 protein; ring 95.6 0.0088 3E-07 43.8 3.4 46 192-240 15-75 (89)
58 3a1b_A DNA (cytosine-5)-methyl 93.6 0.014 4.9E-07 47.7 0.3 49 191-242 78-135 (159)
59 2pv0_B DNA (cytosine-5)-methyl 92.8 0.025 8.6E-07 52.4 0.7 49 191-242 92-149 (386)
60 2lq6_A Bromodomain-containing 92.3 0.041 1.4E-06 40.4 1.2 30 193-223 18-48 (87)
61 1vyx_A ORF K3, K3RING; zinc-bi 88.0 0.04 1.4E-06 37.5 -2.0 50 190-241 4-56 (60)
62 3ghg_A Fibrinogen alpha chain; 80.2 11 0.00039 36.0 10.3 24 21-44 50-76 (562)
63 2d8s_A Cellular modulator of i 77.5 0.61 2.1E-05 33.3 0.6 50 191-242 14-68 (80)
64 2ysl_A Tripartite motif-contai 76.4 2.6 8.9E-05 28.3 3.7 50 190-244 18-69 (73)
65 1x64_A Alpha-actinin-2 associa 75.3 3.7 0.00013 29.1 4.4 48 190-242 23-82 (89)
66 2e61_A Zinc finger CW-type PWW 69.0 3.5 0.00012 28.8 2.8 33 203-237 16-49 (69)
67 2ecv_A Tripartite motif-contai 65.7 2.2 7.4E-05 29.4 1.2 48 190-242 17-69 (85)
68 1weq_A PHD finger protein 7; s 64.2 7.7 0.00026 28.1 4.0 46 192-240 26-78 (85)
69 1x4j_A Ring finger protein 38; 61.8 3.1 0.00011 28.3 1.4 49 190-243 21-71 (75)
70 2ect_A Ring finger protein 126 61.3 5.9 0.0002 26.9 2.9 47 191-242 14-62 (78)
71 1v87_A Deltex protein 2; ring- 59.8 2.5 8.6E-05 31.2 0.7 31 213-244 61-94 (114)
72 2kiz_A E3 ubiquitin-protein li 59.6 2.3 7.9E-05 28.4 0.4 47 191-242 13-61 (69)
73 2yur_A Retinoblastoma-binding 58.6 2.5 8.5E-05 28.9 0.5 47 191-241 14-61 (74)
74 2ea6_A Ring finger protein 4; 57.5 5.3 0.00018 26.2 2.0 49 190-243 13-67 (69)
75 3k1l_B Fancl; UBC, ring, RWD, 57.0 6.7 0.00023 35.9 3.1 51 191-242 307-371 (381)
76 2ct2_A Tripartite motif protei 56.9 3.2 0.00011 28.9 0.8 48 191-242 14-66 (88)
77 3ghg_A Fibrinogen alpha chain; 56.5 54 0.0018 31.4 9.3 12 99-110 143-154 (562)
78 4gne_A Histone-lysine N-methyl 56.1 5.5 0.00019 30.0 2.1 27 206-235 70-98 (107)
79 2ecw_A Tripartite motif-contai 56.0 3.1 0.00011 28.5 0.6 48 190-242 17-69 (85)
80 2lk0_A RNA-binding protein 5; 56.0 5.4 0.00019 23.4 1.6 13 230-242 3-15 (32)
81 1deq_A Fibrinogen (alpha chain 53.6 1.3E+02 0.0046 27.4 12.3 10 101-110 148-157 (390)
82 2ysj_A Tripartite motif-contai 51.5 5.6 0.00019 25.9 1.3 44 190-238 18-63 (63)
83 2egp_A Tripartite motif-contai 50.7 10 0.00034 25.6 2.6 47 191-242 11-63 (79)
84 2d8t_A Dactylidin, ring finger 50.7 7.6 0.00026 26.0 1.9 44 192-242 15-59 (71)
85 2ep4_A Ring finger protein 24; 50.5 6.1 0.00021 26.6 1.4 46 192-242 15-62 (74)
86 2k1p_A Zinc finger RAN-binding 50.4 5.2 0.00018 23.7 0.9 12 230-241 4-15 (33)
87 3nmd_A CGMP dependent protein 50.4 62 0.0021 22.6 7.2 44 76-119 22-65 (72)
88 1iym_A EL5; ring-H2 finger, ub 50.1 6.3 0.00022 24.8 1.4 45 192-241 5-52 (55)
89 4b2u_A S67; toxin, ICK; NMR {S 48.4 3.9 0.00013 24.1 0.1 14 230-243 16-29 (36)
90 2ecj_A Tripartite motif-contai 48.1 9.6 0.00033 24.0 2.0 43 191-238 14-58 (58)
91 1wig_A KIAA1808 protein; LIM d 47.9 14 0.00047 25.0 2.9 45 193-242 6-63 (73)
92 1deq_A Fibrinogen (alpha chain 47.4 1.7E+02 0.0058 26.8 12.3 31 17-47 92-124 (390)
93 2l0b_A E3 ubiquitin-protein li 45.4 6.3 0.00021 28.0 0.8 47 191-242 39-87 (91)
94 2ecy_A TNF receptor-associated 45.1 5.8 0.0002 26.1 0.6 48 190-243 13-61 (66)
95 2co8_A NEDD9 interacting prote 42.2 44 0.0015 22.9 5.0 47 191-242 14-75 (82)
96 2eli_A Protein kinase C alpha 42.2 31 0.001 24.4 4.1 33 191-226 27-63 (85)
97 2ecl_A Ring-box protein 2; RNF 40.7 9.6 0.00033 26.5 1.2 25 213-242 48-74 (81)
98 1bor_A Transcription factor PM 40.6 25 0.00085 22.4 3.2 42 190-242 4-47 (56)
99 4a0k_B E3 ubiquitin-protein li 39.1 8.1 0.00028 29.5 0.6 26 213-241 84-109 (117)
100 3nw0_A Non-structural maintena 36.9 9.3 0.00032 32.6 0.7 46 192-241 180-226 (238)
101 3dpl_R Ring-box protein 1; ubi 36.1 8.8 0.0003 28.6 0.4 24 213-241 73-98 (106)
102 2csy_A Zinc finger protein 183 35.4 8.1 0.00028 26.5 0.1 45 191-242 14-59 (81)
103 2ecm_A Ring finger and CHY zin 35.0 5.9 0.0002 24.8 -0.7 45 192-241 5-52 (55)
104 1jm7_A BRCA1, breast cancer ty 33.8 7.5 0.00026 28.2 -0.3 45 193-242 22-68 (112)
105 3he4_A Synzip6; heterodimeric 32.0 48 0.0016 21.2 3.3 18 99-116 36-53 (56)
106 1fxk_C Protein (prefoldin); ar 31.4 1.6E+02 0.0055 21.9 7.1 45 75-119 83-127 (133)
107 2dj7_A Actin-binding LIM prote 31.2 43 0.0015 22.9 3.4 46 191-241 14-71 (80)
108 4dac_A Computationally designe 30.9 72 0.0025 17.7 3.6 19 98-116 5-23 (28)
109 2d8v_A Zinc finger FYVE domain 30.6 24 0.00081 24.4 1.8 12 231-242 27-38 (67)
110 2dar_A PDZ and LIM domain prot 30.6 30 0.001 24.1 2.5 45 192-241 25-81 (90)
111 2ct0_A Non-SMC element 1 homol 30.6 27 0.00092 24.3 2.1 45 191-241 14-61 (74)
112 3ng2_A RNF4, snurf, ring finge 30.0 20 0.00069 23.4 1.4 48 191-243 9-62 (71)
113 2ke4_A CDC42-interacting prote 29.8 1.6E+02 0.0056 21.5 7.3 18 100-117 68-85 (98)
114 1t1h_A Gspef-atpub14, armadill 29.7 12 0.0004 25.4 0.1 46 191-242 7-53 (78)
115 1x68_A FHL5 protein; four-and- 29.7 51 0.0017 22.0 3.5 45 193-242 6-66 (76)
116 2d8x_A Protein pinch; LIM doma 29.4 25 0.00087 23.1 1.8 46 192-242 5-62 (70)
117 2qyw_A Vesicle transport throu 29.1 1.7E+02 0.0057 21.3 7.2 45 73-117 53-101 (102)
118 2enn_A NPKC-theta, protein kin 27.8 33 0.0011 23.7 2.3 33 191-226 33-69 (77)
119 2enz_A NPKC-theta, protein kin 27.6 51 0.0017 21.8 3.1 33 191-226 22-58 (65)
120 3ztg_A E3 ubiquitin-protein li 27.2 11 0.00038 26.4 -0.4 47 191-241 12-59 (92)
121 2djb_A Polycomb group ring fin 27.0 25 0.00084 23.4 1.4 47 191-243 14-61 (72)
122 2xzr_A Immunoglobulin-binding 27.0 1.9E+02 0.0065 21.3 12.4 95 8-108 7-104 (114)
123 3ghg_B Fibrinogen beta chain; 26.8 4E+02 0.014 24.9 11.5 36 82-117 158-193 (461)
124 2jwo_A RAG-2, V(D)J recombinat 25.9 39 0.0013 24.0 2.2 31 205-237 38-75 (82)
125 2ckl_B Ubiquitin ligase protei 25.3 11 0.00037 29.7 -0.9 46 192-242 54-100 (165)
126 2lh0_A Histone chaperone RTT10 25.3 35 0.0012 23.7 1.9 30 15-44 9-40 (70)
127 2yuu_A NPKC-delta, protein kin 25.2 42 0.0014 23.5 2.4 32 191-225 27-62 (83)
128 2yo3_A General control protein 24.9 2.8E+02 0.0096 24.0 8.0 45 73-117 202-246 (268)
129 2d8y_A Eplin protein; LIM doma 24.8 49 0.0017 23.0 2.7 45 191-240 14-71 (91)
130 2cu8_A Cysteine-rich protein 2 24.6 46 0.0016 22.2 2.5 45 192-241 9-67 (76)
131 1faq_A RAF-1; transferase, ser 24.0 43 0.0015 20.9 2.1 33 191-227 13-46 (52)
132 1nyp_A Pinch protein; LIM doma 23.6 27 0.00091 22.7 1.0 43 193-240 6-60 (66)
133 2zqm_A Prefoldin beta subunit 23.6 2.1E+02 0.0071 20.6 9.0 99 17-119 3-109 (117)
134 3l11_A E3 ubiquitin-protein li 23.1 31 0.0011 25.1 1.4 45 192-242 15-60 (115)
135 1n0z_A ZNF265; zinc finger, RN 23.0 27 0.00091 22.0 0.9 13 229-241 11-25 (45)
136 2zdi_C Prefoldin subunit alpha 22.4 2.3E+02 0.0078 21.7 6.5 45 75-119 93-137 (151)
137 2l5g_A GPS2 protein, G protein 22.3 1.3E+02 0.0044 18.3 3.8 25 68-92 11-35 (38)
138 2cur_A Skeletal muscle LIM-pro 22.1 32 0.0011 22.5 1.2 44 193-241 6-61 (69)
139 2d8z_A Four and A half LIM dom 22.0 43 0.0015 21.9 1.8 44 193-241 6-61 (70)
140 3lt7_A Adhesin YADA; adhesion, 21.8 1.9E+02 0.0066 19.6 7.4 44 76-119 4-52 (64)
141 2dmj_A Poly (ADP-ribose) polym 21.8 17 0.00058 27.1 -0.3 36 188-224 21-65 (106)
142 1ptq_A Protein kinase C delta 21.6 36 0.0012 21.0 1.3 33 191-226 10-46 (50)
143 2ecn_A Ring finger protein 141 21.5 16 0.00053 24.1 -0.5 44 191-242 14-58 (70)
144 1uw0_A DNA ligase III; DNA rep 21.4 15 0.0005 28.0 -0.8 9 216-224 49-57 (117)
145 3fxb_A Trap dicarboxylate tran 21.3 3.9E+02 0.013 22.9 9.0 37 16-52 235-271 (326)
146 2ehe_A Four and A half LIM dom 21.1 90 0.0031 21.0 3.5 45 193-242 16-74 (82)
147 1v9x_A Poly (ADP-ribose) polym 20.7 16 0.00053 27.8 -0.7 9 216-224 52-60 (114)
148 2l7p_A Histone-lysine N-methyl 20.6 19 0.00065 26.8 -0.3 31 203-237 26-58 (100)
149 2cs3_A Protein C14ORF4, MY039 20.6 33 0.0011 24.7 1.0 47 189-237 12-63 (93)
150 2eqg_A Tumor necrosis factor, 20.3 25 0.00086 22.3 0.3 27 206-242 12-38 (49)
151 2k0a_A PRE-mRNA-splicing facto 20.2 7.4 0.00025 29.3 -2.6 35 208-244 48-84 (109)
152 1m1j_A Fibrinogen alpha subuni 20.0 5.5E+02 0.019 24.1 12.8 43 76-118 114-156 (491)
No 1
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=172.78 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=91.6
Q ss_pred HHHHHHhhh-ccCChHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHHHHHH
Q 025765 6 QVFLLTFMD-IFFPPLVRDAQMQC--FFVHTLAEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSI 82 (248)
Q Consensus 6 ~~yle~fie-~~~lP~EL~r~~~~--elD~~~qel~~~~~~~~~~~l~~~~k~~~~gs~~~~~k~~~l~~~I~~~~~~~~ 82 (248)
.+|||+||+ +++||.||+|+|++ |+|.+++++++++++....|+ + ++|+++++++...+ ..|++.|.+++
T Consensus 3 ~~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~----~--~~~~~~~~~r~~~l-~~I~~~~~~~~ 75 (104)
T 4afl_A 3 GMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYM----S--SARSLSSEEKLALL-KQIQEAYGKCK 75 (104)
T ss_dssp CHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----T--CCSCCCHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HCCCCChhhhHHHH-HHHHHHHHHHH
Confidence 489999999 99999999999999 999999999999988777654 4 78999999998888 79999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025765 83 RIADEKVALAVQAYDLVDTHIQQLDQYLK 111 (248)
Q Consensus 83 ~l~dEKv~lA~~~~~lvd~hir~LD~dl~ 111 (248)
+++||||+||++||+||++|++|||.||+
T Consensus 76 ~l~dEKv~lA~~~~dlvdkhirrLD~dla 104 (104)
T 4afl_A 76 EFGDDKVQLAMQTYEMVDKHIRRLDTDLA 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999874
No 2
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.88 E-value=3e-23 Score=150.26 Aligned_cols=66 Identities=62% Similarity=1.456 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCceeeeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccccCC
Q 025765 181 MELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRRK 246 (248)
Q Consensus 181 ~~~~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~~~k 246 (248)
.+.+.++++++.+||+|+++++|+||+||+++|+++|||+.||||+..|.++||||.|....+|++
T Consensus 5 ~~~~~~~d~~~~~~C~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~k~~ 70 (71)
T 1wen_A 5 SSGDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSS 70 (71)
T ss_dssp CSSCCCCCTTSCCCSTTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSSSCC
T ss_pred cccccccCCCCCCEEECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccccccC
Confidence 456788999999999999999999999999999988999999999999999999999998776655
No 3
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.87 E-value=1.2e-22 Score=153.49 Aligned_cols=67 Identities=63% Similarity=1.459 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCceeeeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccccCC
Q 025765 180 GMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRRK 246 (248)
Q Consensus 180 ~~~~~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~~~k 246 (248)
....++++++++.+||+|+++++|+||+||+++|+++|||+.||||+..|.++||||.|...+++++
T Consensus 24 ~~~~~~~~d~~e~~yCiC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~k~~ 90 (91)
T 1weu_A 24 SDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSS 90 (91)
T ss_dssp CCCCSCCCCSCCCBCSTTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCSSSC
T ss_pred cccccCCcCCCCCcEEECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCCcCC
Confidence 3456788999999999999999999999999999989999999999999999999999998776655
No 4
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.86 E-value=3.4e-23 Score=146.20 Aligned_cols=58 Identities=67% Similarity=1.547 Sum_probs=48.9
Q ss_pred CCCCCCCCCceeeeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 184 DLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 184 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
+.++||++++||+|+++++|+||+||+++|+++|||+.||||+..|.++||||.|..+
T Consensus 3 ~~~~d~~e~~yC~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 3 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp -------CCEETTTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred ccccCCCCCcEEECCCCCCCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 5678899999999999999999999999999999999999999999999999999754
No 5
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.84 E-value=3.9e-22 Score=150.41 Aligned_cols=59 Identities=58% Similarity=1.356 Sum_probs=49.8
Q ss_pred CCCCCCCCCceeeeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCC-Ccccc
Q 025765 184 DLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPD-CAALK 242 (248)
Q Consensus 184 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~-C~~~~ 242 (248)
..+.++++.+||+|+++++|+||+||+|+|+++|||+.||||+..|.++||||. |....
T Consensus 18 ~~~~~~~~~~yCiC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 18 TEGNNNQEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp ------CCSCCSTTTCCCSSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHH
T ss_pred CCCCCCCCCcEEEeCCCCCCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchh
Confidence 345677889999999999999999999999999999999999999999999999 87543
No 6
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-22 Score=145.77 Aligned_cols=57 Identities=67% Similarity=1.526 Sum_probs=52.5
Q ss_pred CCCCCceeeeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccccc
Q 025765 188 DPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNR 244 (248)
Q Consensus 188 ~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~~ 244 (248)
+|++++||+|+++++|+||+||+|+|+++|||+.||||+..|.++||||.|.....+
T Consensus 2 ~~~~~~yC~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 2 SSGSSGYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp CCSCCCCSTTSCCCCSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHHH
T ss_pred CCCCCeEEEcCCCCCCCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccccc
Confidence 477899999999999999999999998899999999999999999999999876644
No 7
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.83 E-value=3.2e-22 Score=139.85 Aligned_cols=56 Identities=64% Similarity=1.496 Sum_probs=48.4
Q ss_pred CCCCCCCceeeeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 186 PVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 186 ~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
++||++..||+|+++++|+||+||+++|+++|||+.||||+..|.|+||||.|..+
T Consensus 3 ~~d~~e~~yC~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 3 CRGSNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp -----CCEETTTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHCC
T ss_pred ccCCCCCcEEECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccCc
Confidence 56889999999999999999999999999889999999999999999999999753
No 8
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.83 E-value=5.2e-22 Score=139.18 Aligned_cols=58 Identities=71% Similarity=1.691 Sum_probs=48.1
Q ss_pred CCCCCCCCCceeeeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 184 DLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 184 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
+.++|+++..||+|+++++|+||+||+++|+++|||+.||||+..|.|+||||.|..+
T Consensus 2 ~~~~d~~e~~~C~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 2 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp -------CCEETTTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC-
T ss_pred CcccCCCCCCEEECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccCc
Confidence 4577899999999999999999999999999899999999999999999999999753
No 9
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.70 E-value=3.1e-18 Score=125.87 Aligned_cols=64 Identities=31% Similarity=0.800 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCCceeeeCCC-CCCCceecCCCCCCCcceecccCCCCcCC-------CCceeCCCCcccccc
Q 025765 180 GMELDLPVDPNEPTYCVCNQV-SYGEMVACDNPNCKIEWFHFGCVGLKEQP-------KGKWYCPDCAALKNR 244 (248)
Q Consensus 180 ~~~~~~~~~~~~~~~C~C~~~-~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p-------~~~w~C~~C~~~~~~ 244 (248)
+++.+.++++++.+||+|+++ ++|.||+|||..|. .|||+.||||+..+ .++|||+.|...+.+
T Consensus 4 ~~~~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~-~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 4 GSSGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCH-VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTC-CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred ccccccccCCCCCEEeECCCcCCCCCEEEECCccCC-ccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 456677888999999999999 67999999966699 79999999999875 369999999876544
No 10
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.58 E-value=4.3e-16 Score=111.52 Aligned_cols=56 Identities=25% Similarity=0.810 Sum_probs=46.5
Q ss_pred CCCCCCCceeeeCCC-CCCCceecCCCCCCCcceecccCCCCcCCC------CceeCCCCcccc
Q 025765 186 PVDPNEPTYCVCNQV-SYGEMVACDNPNCKIEWFHFGCVGLKEQPK------GKWYCPDCAALK 242 (248)
Q Consensus 186 ~~~~~~~~~C~C~~~-~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~------~~w~C~~C~~~~ 242 (248)
+.+|++.+||+|+.+ ++|.||+||+..|. .|||+.||||+..+. +.|||+.|+..+
T Consensus 4 ~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~-~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 4 SFQPEAKVRCICSSTMVNDSMIQCEDQRCQ-VWQHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp CCCSSCEECCTTCCCSCCSCEEECSCTTTC-EEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CcCCCCCEEeECCCCcCCCCEEEECCCCCC-CeEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 456778899999887 56899999976788 999999999987552 479999998653
No 11
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.55 E-value=7.4e-16 Score=112.03 Aligned_cols=58 Identities=36% Similarity=0.981 Sum_probs=49.2
Q ss_pred CCCCCcee-eeCCCCCC-CceecCCCCCCCcceecccCCCCcCC--CCceeCCCCccccccCCCC
Q 025765 188 DPNEPTYC-VCNQVSYG-EMVACDNPNCKIEWFHFGCVGLKEQP--KGKWYCPDCAALKNRRKGR 248 (248)
Q Consensus 188 ~~~~~~~C-~C~~~~~g-~mi~Cd~~~C~~~WfH~~Cvgl~~~p--~~~w~C~~C~~~~~~~k~~ 248 (248)
+.++..|| +|++++++ .||+||+ |. +|||+.|||++..+ .+.|||+.|.....|+|++
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~--C~-~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~kk~ 75 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDD--CD-DWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDKKH 75 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSS--SS-SEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSCCCC
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCC--CC-cccccccCCCCccCCCCCCEEChhccCchhhcccC
Confidence 44567899 99999877 6999999 77 99999999988754 5899999999888777764
No 12
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.49 E-value=5.7e-15 Score=105.75 Aligned_cols=52 Identities=21% Similarity=0.684 Sum_probs=43.9
Q ss_pred CCCCCCCceeeeCCCCCC-CceecCCCCCCCcceecccCCCCcC-CCCceeCCCCcc
Q 025765 186 PVDPNEPTYCVCNQVSYG-EMVACDNPNCKIEWFHFGCVGLKEQ-PKGKWYCPDCAA 240 (248)
Q Consensus 186 ~~~~~~~~~C~C~~~~~g-~mi~Cd~~~C~~~WfH~~Cvgl~~~-p~~~w~C~~C~~ 240 (248)
..++++.+||+|+++++| .||+||+ |. +|||+.|||++.. ..+.|+|+.|..
T Consensus 13 ~~~~~~~~~CiC~~~~~~~~MIqCd~--C~-~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 13 NLYFQGLVTCFCMKPFAGRPMIECNE--CH-TWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp -CTTTTCCCSTTCCCCTTCCEEECTT--TC-CEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred cCCCCCceEeECCCcCCCCCEEECCC--CC-ccccccccCcCcccCCCcEECCCCCC
Confidence 345667999999999876 5999999 77 9999999999884 358999999974
No 13
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.48 E-value=3.1e-15 Score=109.07 Aligned_cols=53 Identities=43% Similarity=1.077 Sum_probs=44.3
Q ss_pred CCCCCCceeeeCCCCC-CCceecCCCCCCCcceecccCCCCcCC-------CCceeCCCCccccc
Q 025765 187 VDPNEPTYCVCNQVSY-GEMVACDNPNCKIEWFHFGCVGLKEQP-------KGKWYCPDCAALKN 243 (248)
Q Consensus 187 ~~~~~~~~C~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvgl~~~p-------~~~w~C~~C~~~~~ 243 (248)
.|++ .+||+|+++++ +.||+||. |. +|||+.||||+..+ .+.|+|+.|.....
T Consensus 12 ~d~~-~~~C~C~~~~~~~~MI~Cd~--C~-~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 12 YDPN-ALYCICRQPHNNRFMICCDR--CE-EWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCTT-CCCSTTCCCCCSSCEEECSS--SC-CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred cCCC-CCEEECCCccCCCCEEEeCC--CC-CcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4444 69999999987 48999999 77 99999999998753 47999999986654
No 14
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.48 E-value=9.3e-15 Score=103.04 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=44.7
Q ss_pred CCCCcee-eeCCCC--CCCceecCCCCCCCcceecccCCCCcCC---CCceeCCCCcccccc
Q 025765 189 PNEPTYC-VCNQVS--YGEMVACDNPNCKIEWFHFGCVGLKEQP---KGKWYCPDCAALKNR 244 (248)
Q Consensus 189 ~~~~~~C-~C~~~~--~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p---~~~w~C~~C~~~~~~ 244 (248)
.++..|| +|++++ ++.||+||. |. +|||+.||||+..+ .+.|+|+.|..+..+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~--C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDL--CE-MWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSS--SC-CEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCccCCCCCEEEccC--CC-CCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 4568999 999996 478999998 77 99999999998864 478999999876543
No 15
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.47 E-value=6.3e-15 Score=100.04 Aligned_cols=47 Identities=23% Similarity=0.823 Sum_probs=41.0
Q ss_pred CCceeeeCCCCCC-CceecCCCCCCCcceecccCCCCcCC-CCceeCCCCcc
Q 025765 191 EPTYCVCNQVSYG-EMVACDNPNCKIEWFHFGCVGLKEQP-KGKWYCPDCAA 240 (248)
Q Consensus 191 ~~~~C~C~~~~~g-~mi~Cd~~~C~~~WfH~~Cvgl~~~p-~~~w~C~~C~~ 240 (248)
+.+||+|+++++| .||+||+ |. +|||+.|||++..+ ++.|+||.|..
T Consensus 3 d~~~C~C~~~~~~~~MI~Cd~--C~-~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFAGRPMIECNE--CH-TWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCTTCCEEECTT--TC-CEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred cCeEEEeCCcCCCCCEEEcCC--CC-ccccccccCCCcccCCCcEECcCCCC
Confidence 4789999999775 8999999 77 99999999998853 58999999964
No 16
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.46 E-value=5.3e-15 Score=107.70 Aligned_cols=51 Identities=39% Similarity=0.966 Sum_probs=43.8
Q ss_pred CCCCCceeeeCCCCC--CCceecCCCCCCCcceecccCCCCcCCC---CceeCCCCccc
Q 025765 188 DPNEPTYCVCNQVSY--GEMVACDNPNCKIEWFHFGCVGLKEQPK---GKWYCPDCAAL 241 (248)
Q Consensus 188 ~~~~~~~C~C~~~~~--g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~---~~w~C~~C~~~ 241 (248)
.+++++||+|+++++ +.||+||+ |. +|||+.|||++..+. +.|+|+.|...
T Consensus 6 ~~~~~~yCiC~~~~~~~~~MI~Cd~--C~-~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 6 MATVPVYCVCRLPYDVTRFMIECDA--CK-DWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp TCCCCEETTTTEECCTTSCEEECTT--TC-CEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCCCeeEEECCCcCCCCCCEEEcCC--CC-CCEecccccccccccCCCCEEECCCCccc
Confidence 456789999999864 58999999 77 999999999998652 68999999765
No 17
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.45 E-value=1.1e-14 Score=107.10 Aligned_cols=50 Identities=40% Similarity=0.972 Sum_probs=43.2
Q ss_pred CCCceeeeCCCC--CCCceecCCCCCCCcceecccCCCCcCC---CCceeCCCCcccc
Q 025765 190 NEPTYCVCNQVS--YGEMVACDNPNCKIEWFHFGCVGLKEQP---KGKWYCPDCAALK 242 (248)
Q Consensus 190 ~~~~~C~C~~~~--~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p---~~~w~C~~C~~~~ 242 (248)
++.+||+|++++ ++.||+||+ |. +|||+.||||+..+ .+.|+|+.|....
T Consensus 10 ~~~~~C~C~~~~d~~~~MIqCd~--C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYCLCRQPYNVNHFMIECGL--CQ-DWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCSTTSCSCCSSSCEEEBTT--TC-CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEEEcCCccCCCCceEEcCC--CC-CcEEeeecCcccccccCCCeEECCCccccc
Confidence 468999999997 578999999 77 99999999998854 4799999998654
No 18
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.44 E-value=3.2e-14 Score=102.75 Aligned_cols=53 Identities=32% Similarity=0.732 Sum_probs=43.8
Q ss_pred CCCCCCceeeeCCCC-CC-CceecCCCCCCCcceecccCCCCcC--CCCceeCCCCcccc
Q 025765 187 VDPNEPTYCVCNQVS-YG-EMVACDNPNCKIEWFHFGCVGLKEQ--PKGKWYCPDCAALK 242 (248)
Q Consensus 187 ~~~~~~~~C~C~~~~-~g-~mi~Cd~~~C~~~WfH~~Cvgl~~~--p~~~w~C~~C~~~~ 242 (248)
.+.++.+||+|+++. +| .||+||. |. .|||+.|||++.. ..+.|+|+.|....
T Consensus 11 ~~~~~~~~C~C~~~~~~g~~mI~Cd~--C~-~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 11 GVDNWKVDCKCGTKDDDGERMLACDG--CG-VWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSCSSEECCTTCCCSCCSSCEEECSS--SC-EEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CCCCcceEeeCCCccCCCCcEEECCC--CC-CccCCeeeccCccccCCCcEECCCccCCC
Confidence 345678999999985 46 6999999 77 9999999999863 36899999998654
No 19
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.28 E-value=2.3e-12 Score=90.16 Aligned_cols=51 Identities=37% Similarity=1.032 Sum_probs=44.0
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCC--CCcCCCCceeCCCCccccccCC
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDCAALKNRRK 246 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~~~~~k 246 (248)
+..+| +|+.. |+||.||. |+ .+||+.|++ |+..|.|.|||+.|.....|+|
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~--C~-~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k~~ 61 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDT--CP-SSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSS--SC-CCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTTC
T ss_pred CCCcCCCCCCC--CCEEEcCC--CC-HHHcccccCCCcCcCCCCccCChhhcCchhcCC
Confidence 35678 89975 89999999 77 899999998 8888999999999998776654
No 20
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.27 E-value=1.3e-12 Score=101.32 Aligned_cols=50 Identities=36% Similarity=0.870 Sum_probs=42.1
Q ss_pred CCCCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 189 PNEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 189 ~~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
+.+..|| +|+. +|+||+||+..|+ .|||+.||+|+..|.|+||||.|...
T Consensus 12 ~~~~~~C~~C~~--~G~ll~CD~~~Cp-~~fH~~Cl~L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 12 QMHEDYCFQCGD--GGELVMCDKKDCP-KAYHLLCLNLTQPPYGKWECPWHQCD 62 (107)
T ss_dssp CSSCSSCTTTCC--CSEEEECCSTTCC-CEECTGGGTCSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCCcCCC--CCcEeEECCCCCC-cccccccCcCCcCCCCCEECCCCCCC
Confidence 4457899 7774 4899999955599 89999999999999999999987643
No 21
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=98.10 Aligned_cols=51 Identities=29% Similarity=0.828 Sum_probs=41.3
Q ss_pred CCCCceeeeCCCC-CCCceecCCCCCCCcceecccCCCCcC-CCCceeCCCCcccc
Q 025765 189 PNEPTYCVCNQVS-YGEMVACDNPNCKIEWFHFGCVGLKEQ-PKGKWYCPDCAALK 242 (248)
Q Consensus 189 ~~~~~~C~C~~~~-~g~mi~Cd~~~C~~~WfH~~Cvgl~~~-p~~~w~C~~C~~~~ 242 (248)
.++.+.|+|+.+. .|.||+||. |. .|||+.|||++.. ..+.|||+.|....
T Consensus 25 ~~d~vrCiC~~~~~~~~mi~Cd~--C~-~w~H~~C~~~~~~~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 25 GTDVTRCICGFTHDDGYMICCDK--CS-VWQHIDCMGIDRQHIPDTYLCERCQPRN 77 (98)
T ss_dssp CCCBCCCTTSCCSCSSCEEEBTT--TC-BEEETTTTTCCTTSCCSSBCCTTTSSSC
T ss_pred CCCCEEeECCCccCCCcEEEcCC--CC-CcCcCcCCCCCccCCCCCEECCCCcCCC
Confidence 3457889999885 478999999 77 9999999998653 24689999997543
No 22
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.26 E-value=2.9e-13 Score=129.71 Aligned_cols=52 Identities=46% Similarity=1.064 Sum_probs=44.3
Q ss_pred CCCCCCceeeeCCCC--CCCceecCCCCCCCcceecccCCCCcCCC---CceeCCCCccc
Q 025765 187 VDPNEPTYCVCNQVS--YGEMVACDNPNCKIEWFHFGCVGLKEQPK---GKWYCPDCAAL 241 (248)
Q Consensus 187 ~~~~~~~~C~C~~~~--~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~---~~w~C~~C~~~ 241 (248)
...++..||+|++++ ++.||+||+ |. +|||+.|||++..+. +.|+|+.|...
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~--C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDI--CK-DWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTT--TC-CEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccC--CC-CceeeeecCcCcccccCCCEEECCCCcCC
Confidence 344678999999986 578999999 77 999999999998753 68999999754
No 23
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.26 E-value=2.1e-12 Score=91.72 Aligned_cols=51 Identities=35% Similarity=0.974 Sum_probs=43.4
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCC--CCcCCCCceeCCCCccccccC
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDCAALKNRR 245 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~~~~~ 245 (248)
.+..+| +|+.. |+||.||. |+ .|||+.|++ |+..|.|.|||+.|.....++
T Consensus 6 ~~~~~C~vC~~~--g~ll~CD~--C~-~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~ 59 (66)
T 1xwh_A 6 KNEDECAVCRDG--GELICCDG--CP-RAFHLACLSPPLREIPSGTWRCSSCLQATVQE 59 (66)
T ss_dssp SCCCSBSSSSCC--SSCEECSS--CC-CEECTTTSSSCCSSCCSSCCCCHHHHHTCCCC
T ss_pred CCCCCCccCCCC--CCEEEcCC--CC-hhhcccccCCCcCcCCCCCeECccccCccccc
Confidence 346788 99986 89999999 88 899999998 888899999999998665443
No 24
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.24 E-value=1.1e-12 Score=101.46 Aligned_cols=47 Identities=30% Similarity=0.892 Sum_probs=39.7
Q ss_pred cee-eeCCC--CCCCceecC-CCCCCCcceecccCCCCc--------CCCCceeCCCCcccc
Q 025765 193 TYC-VCNQV--SYGEMVACD-NPNCKIEWFHFGCVGLKE--------QPKGKWYCPDCAALK 242 (248)
Q Consensus 193 ~~C-~C~~~--~~g~mi~Cd-~~~C~~~WfH~~Cvgl~~--------~p~~~w~C~~C~~~~ 242 (248)
..| +|+++ ++++||+|| . |. +|||+.||||+. .|.+.|+||.|....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~--C~-~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEAS--CQ-KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTT--TC-CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCC--cc-cccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357 99999 567899998 6 87 999999999997 466899999998654
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.23 E-value=4.1e-13 Score=111.79 Aligned_cols=53 Identities=26% Similarity=0.878 Sum_probs=42.3
Q ss_pred CCCCCCceeeeCCCC--CCCceecCCCCCCCcceecccCCCCcCC---CCceeCCCCcccc
Q 025765 187 VDPNEPTYCVCNQVS--YGEMVACDNPNCKIEWFHFGCVGLKEQP---KGKWYCPDCAALK 242 (248)
Q Consensus 187 ~~~~~~~~C~C~~~~--~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p---~~~w~C~~C~~~~ 242 (248)
.++++..||+|+++. +|.||+||. |+ +|||+.|||++..+ .+.|+|+.|....
T Consensus 3 ~~~~~~~~C~C~~~~~~~~~mi~Cd~--C~-~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 3 LGSDTKLYCICKTPEDESKFYIGCDR--CQ-NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp ----CCEETTTTEECCTTSCEEECTT--TC-CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCCCcEeeCCCCCCCCCCEeECCC--CC-chhChhhcCCchhhccCccCeecCCCcchh
Confidence 445678999999985 478999999 88 99999999998743 6899999997643
No 26
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.21 E-value=2.2e-12 Score=87.36 Aligned_cols=44 Identities=34% Similarity=0.831 Sum_probs=36.0
Q ss_pred eeeeCCCCC--CCceecCCCCCCCcceecccCCCCcCC--CCceeCCCCc
Q 025765 194 YCVCNQVSY--GEMVACDNPNCKIEWFHFGCVGLKEQP--KGKWYCPDCA 239 (248)
Q Consensus 194 ~C~C~~~~~--g~mi~Cd~~~C~~~WfH~~Cvgl~~~p--~~~w~C~~C~ 239 (248)
.|+|++|++ +.||+||+ .|. +|||+.||||+..+ .++|+|+.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~-~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCD-EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTC-CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCC-CCC-ccCcccccCCCccccCCCCEECCCCC
Confidence 469999975 46999993 388 99999999998854 4899999995
No 27
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.20 E-value=3e-12 Score=89.12 Aligned_cols=49 Identities=37% Similarity=1.091 Sum_probs=42.7
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccCC--CCcCCCCceeCCCCccccccC
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDCAALKNRR 245 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~~~~~ 245 (248)
..+| +|+.. |+||.||. |+ .|||+.|++ |+..|.|.|||+.|.....++
T Consensus 5 ~~~C~vC~~~--g~ll~Cd~--C~-~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 5 EDFCSVCRKS--GQLLMCDT--CS-RVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CSSCTTTCCC--SSCEECSS--SS-CEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCcCCCCC--CcEEEcCC--CC-cCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 4667 99986 89999999 88 999999998 888899999999998776554
No 28
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.7e-12 Score=85.89 Aligned_cols=45 Identities=40% Similarity=1.195 Sum_probs=39.9
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCC--CCcCCCCceeCCCCcc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDCAA 240 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~ 240 (248)
+..+| +|+.. |+||.||. |+ .|||+.|++ |+..|.+.|||+.|..
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~--C~-~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDT--CS-RVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSS--SS-CEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC--CeEEEcCC--CC-cceECccCCCCcCCCCCCceEChhhhC
Confidence 35678 89986 89999999 88 999999998 8888999999999964
No 29
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=9.2e-12 Score=87.06 Aligned_cols=47 Identities=40% Similarity=1.113 Sum_probs=40.5
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCCC--CcCCCCceeCCCCccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGL--KEQPKGKWYCPDCAAL 241 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl--~~~p~~~w~C~~C~~~ 241 (248)
++..+| +|++. |+||.||. |+ .|||+.|+++ +..|.+.|||+.|...
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~--C~-~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDT--CP-RAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSS--SS-CEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC--CcEEECCC--CC-hhhhhhccCCCCCCCCCCceECcccccc
Confidence 346789 89986 89999999 88 8999999986 6688999999999754
No 30
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.15 E-value=9.4e-12 Score=83.70 Aligned_cols=44 Identities=39% Similarity=1.072 Sum_probs=38.2
Q ss_pred ee-eeCCCC-CCCceecCCCCCCCcceecccC--CCCcCCCCceeCCCCcc
Q 025765 194 YC-VCNQVS-YGEMVACDNPNCKIEWFHFGCV--GLKEQPKGKWYCPDCAA 240 (248)
Q Consensus 194 ~C-~C~~~~-~g~mi~Cd~~~C~~~WfH~~Cv--gl~~~p~~~w~C~~C~~ 240 (248)
+| +|+++. .++||.||. |+ .|||+.|+ +|+..|.|.|||+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~--C~-~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDE--CN-KAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTT--TC-CEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCC--CC-hhhCcccCCCCcCCCCCCcEECcCccc
Confidence 46 898875 468999999 77 99999999 68889999999999975
No 31
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.14 E-value=5.9e-12 Score=90.72 Aligned_cols=50 Identities=28% Similarity=0.743 Sum_probs=42.4
Q ss_pred CCcee-eeCCCC---CCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccc
Q 025765 191 EPTYC-VCNQVS---YGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKN 243 (248)
Q Consensus 191 ~~~~C-~C~~~~---~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~ 243 (248)
+..+| +|+.+. .++||.||. |+ .|||..|+++...|.|.|||+.|.....
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~--C~-~~~H~~Cl~~~~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDM--CN-LAVHQECYGVPYIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSS--SC-CEEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCC--CC-CccccccCCCCcCCCCCcCCccCcCcCc
Confidence 45667 998873 468999999 77 8999999999999999999999986543
No 32
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.13 E-value=3e-12 Score=90.75 Aligned_cols=43 Identities=30% Similarity=0.985 Sum_probs=36.7
Q ss_pred ee-eeCCCCC--CCceecC-CCCCCCcceecccCCCCcC--------CCCceeCCCCc
Q 025765 194 YC-VCNQVSY--GEMVACD-NPNCKIEWFHFGCVGLKEQ--------PKGKWYCPDCA 239 (248)
Q Consensus 194 ~C-~C~~~~~--g~mi~Cd-~~~C~~~WfH~~Cvgl~~~--------p~~~w~C~~C~ 239 (248)
.| +|+++.+ ..||+|| . |. +|||+.||||+.. |.+.|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~--C~-~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEAS--CQ-KWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTT--TC-CEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccC--cc-ccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 35 9999965 4699999 7 77 9999999999983 67799999985
No 33
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=99.12 E-value=1.7e-12 Score=123.06 Aligned_cols=50 Identities=38% Similarity=1.002 Sum_probs=43.0
Q ss_pred CCCceeeeCCCCC--CCceecCCCCCCCcceecccCCCCcCC---CCceeCCCCcccc
Q 025765 190 NEPTYCVCNQVSY--GEMVACDNPNCKIEWFHFGCVGLKEQP---KGKWYCPDCAALK 242 (248)
Q Consensus 190 ~~~~~C~C~~~~~--g~mi~Cd~~~C~~~WfH~~Cvgl~~~p---~~~w~C~~C~~~~ 242 (248)
+.++||+|+++++ |.||+||. |. +|||+.|||++..+ .+.|+|+.|....
T Consensus 3 ~~~~yCiC~~~~d~~~~MIqCD~--C~-~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 3 SVPVYCLCRLPYDVTRFMIECDM--CQ-DWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp CCCEETTTTEECCTTSCEEECTT--TC-CEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEcCC--CC-cccccccCCcCcccccCCCEEECCCCcccc
Confidence 4689999999964 78999999 77 99999999999864 3789999997654
No 34
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.10 E-value=1.2e-11 Score=92.73 Aligned_cols=49 Identities=27% Similarity=0.733 Sum_probs=41.4
Q ss_pred Ccee-eeCCCC---CCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccc
Q 025765 192 PTYC-VCNQVS---YGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKN 243 (248)
Q Consensus 192 ~~~C-~C~~~~---~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~ 243 (248)
..+| +|+.+. .++||.||. |+ .|||+.|+++...|.|.|||+.|.....
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~--C~-~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDM--CN-LAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSS--SC-CCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCcCCcCCCCCCCCCCCEEECCC--CC-chhhcccCCCCccCCCceECccccCccc
Confidence 4566 999873 358999999 77 8999999999989999999999986543
No 35
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=3.9e-11 Score=90.58 Aligned_cols=49 Identities=33% Similarity=0.899 Sum_probs=41.5
Q ss_pred CCcee-eeCCCCC-CCceecCCCCCCCcceecccCC--CCcCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~~ 242 (248)
+..+| +|++... +.||.||. |+ .|||+.|++ |+..|.+.|||+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~--C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDG--CD-DNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTT--TC-CEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCC--CC-chhccccCCCCcccCCCCCcCCccCcCcc
Confidence 35668 9998853 57999999 77 999999998 888999999999997643
No 36
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.06 E-value=6.9e-11 Score=83.92 Aligned_cols=46 Identities=24% Similarity=0.649 Sum_probs=39.6
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccC--CCCcCCCCceeCCCCcccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCV--GLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cv--gl~~~p~~~w~C~~C~~~~ 242 (248)
...| +|+.. |+||.||. |+ .|||..|+ .|...|.|.|||+.|....
T Consensus 12 ~~~C~vC~~~--~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG--TDVLRCTH--CA-AAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC--TTCEECSS--SC-CEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCC--CeEEECCC--CC-CceecccCCCccCcCCCCCEECccccCCC
Confidence 4557 99876 88999999 77 99999999 4888999999999998654
No 37
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.98 E-value=1.5e-10 Score=81.66 Aligned_cols=54 Identities=26% Similarity=0.672 Sum_probs=42.5
Q ss_pred CCCCcee-eeCCCC---CCCceecCCCCCCCcceecccCCCC--c---CCCCceeCCCCccccccC
Q 025765 189 PNEPTYC-VCNQVS---YGEMVACDNPNCKIEWFHFGCVGLK--E---QPKGKWYCPDCAALKNRR 245 (248)
Q Consensus 189 ~~~~~~C-~C~~~~---~g~mi~Cd~~~C~~~WfH~~Cvgl~--~---~p~~~w~C~~C~~~~~~~ 245 (248)
+.+..+| +|+... .+.||.||. |. .|||..|++.. . .|.+.|||+.|......|
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~-~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~k 65 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDK--CG-QGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 65 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSS--SC-CEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC--CC-hHHHhhhCCCcccccccCCCCCEECCCCcCccccC
Confidence 4456778 999873 378999999 77 99999999853 3 278999999998765544
No 38
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.96 E-value=7.2e-10 Score=82.85 Aligned_cols=48 Identities=35% Similarity=0.981 Sum_probs=41.9
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccC--CCCcCCCCceeCCCCcccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCV--GLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cv--gl~~~p~~~w~C~~C~~~~ 242 (248)
.+..+| +|+.. |+||+||. |+ ..||+.|+ +|+..|.|.|+|+.|...+
T Consensus 23 ~n~~~C~vC~~~--g~LL~CD~--C~-~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP--GDLVMCNQ--CE-FCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS--SCCEECTT--SS-CEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC--CCEEECCC--CC-CceecccCCCCCCCCcCCCcCCccccCCC
Confidence 346688 99987 79999999 88 89999999 7889999999999998554
No 39
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.91 E-value=5.3e-10 Score=80.19 Aligned_cols=43 Identities=33% Similarity=0.909 Sum_probs=37.2
Q ss_pred eeCCCC-CCCceecCCCCCCCcceecccCC--CCcCCCC-ceeCCCCccc
Q 025765 196 VCNQVS-YGEMVACDNPNCKIEWFHFGCVG--LKEQPKG-KWYCPDCAAL 241 (248)
Q Consensus 196 ~C~~~~-~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~-~w~C~~C~~~ 241 (248)
+|++.. .+.||.||. |+ .|||+.|++ |+..|.| .|||+.|..+
T Consensus 23 ~C~~~~~~~~ll~CD~--C~-~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CD-MAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCCSCGGGEEECTT--TC-CEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCcCCCCCEEEcCC--CC-CceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 677664 468999999 77 999999999 8889999 9999999853
No 40
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=79.24 Aligned_cols=44 Identities=34% Similarity=0.954 Sum_probs=38.5
Q ss_pred ee-eeCCCC-CCCceecCCCCCCCcceecccCC--CCcCCCC-ceeCCCCcc
Q 025765 194 YC-VCNQVS-YGEMVACDNPNCKIEWFHFGCVG--LKEQPKG-KWYCPDCAA 240 (248)
Q Consensus 194 ~C-~C~~~~-~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~-~w~C~~C~~ 240 (248)
.| +|++.. .++||.||. |+ .+||+.|++ |+..|.| .|||+.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~--C~-~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDE--CN-VAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSS--SC-CEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCC--CC-ccccccccCCCccCCCCCCCcCCcCccC
Confidence 56 898774 478999999 77 999999998 8889999 999999974
No 41
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.81 E-value=6.9e-10 Score=82.97 Aligned_cols=52 Identities=29% Similarity=0.854 Sum_probs=41.5
Q ss_pred CCCcee-eeCCCCC---CCceecCCCCCCCcceecccCC--CCc----CCCCceeCCCCcccccc
Q 025765 190 NEPTYC-VCNQVSY---GEMVACDNPNCKIEWFHFGCVG--LKE----QPKGKWYCPDCAALKNR 244 (248)
Q Consensus 190 ~~~~~C-~C~~~~~---g~mi~Cd~~~C~~~WfH~~Cvg--l~~----~p~~~w~C~~C~~~~~~ 244 (248)
++..+| +|+.... +.||.||. |. ..||..|++ |.. .|.|.|||+.|.....+
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~--C~-~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQE--CH-NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSS--SC-CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCC--CC-CeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 346678 9998753 68999999 76 899999997 442 68999999999876544
No 42
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.72 E-value=2.3e-09 Score=83.69 Aligned_cols=49 Identities=29% Similarity=0.855 Sum_probs=41.3
Q ss_pred ee-eeCCCC-CCCceecCCCCCCCcceecccCC--CCcCCCCceeCCCCccccccC
Q 025765 194 YC-VCNQVS-YGEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDCAALKNRR 245 (248)
Q Consensus 194 ~C-~C~~~~-~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~~~~~ 245 (248)
+| +|++.. .+.||.||. |+ .|||+.|++ |+..|.|.|||+.|....+++
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDD--CD-RGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTTTTEEECSS--SC-CEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCCCceEEcCC--CC-ccccccccCCCccCCCCCCeECccccchhhcc
Confidence 56 888765 478999999 77 999999998 888999999999998765543
No 43
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.68 E-value=8.5e-09 Score=75.23 Aligned_cols=42 Identities=33% Similarity=0.960 Sum_probs=35.9
Q ss_pred eeCCCCC-CCceecCCCCCCCcceecccCC--CCcCCCCc-eeCCCCcc
Q 025765 196 VCNQVSY-GEMVACDNPNCKIEWFHFGCVG--LKEQPKGK-WYCPDCAA 240 (248)
Q Consensus 196 ~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~-w~C~~C~~ 240 (248)
+|++... +.||.||. |+ .+||+.|++ |...|.|. |||+.|+.
T Consensus 31 vC~~~~d~~~ll~CD~--C~-~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDE--CD-MAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCCSCGGGEEECTT--TC-CEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred ccCCCCCCcceeEeCC--CC-CccCcccCCCcccCCCCCCceECcCccc
Confidence 7777654 57999999 77 999999998 88899998 99999975
No 44
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.57 E-value=1.8e-08 Score=87.31 Aligned_cols=45 Identities=33% Similarity=0.938 Sum_probs=34.5
Q ss_pred ee-eeCCCC-CCCceecCCCCCCCcceecccCC--CCcCCCC-ceeCCCCccc
Q 025765 194 YC-VCNQVS-YGEMVACDNPNCKIEWFHFGCVG--LKEQPKG-KWYCPDCAAL 241 (248)
Q Consensus 194 ~C-~C~~~~-~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~-~w~C~~C~~~ 241 (248)
.| +|++.. .+.||.||. |+ .|||+.|++ |+..|.| .||||.|...
T Consensus 176 ~C~vC~~~~~~~~lL~CD~--C~-~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDE--CD-MAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSS--SC-CEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCC--CC-cceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 46 888764 468999999 77 899999998 8888999 9999999753
No 45
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.56 E-value=3.3e-08 Score=76.78 Aligned_cols=44 Identities=36% Similarity=0.936 Sum_probs=37.9
Q ss_pred ee-eeCCCC--CCCceecCCCCCCCcceecccC--CCCcCCCCceeCCCCcc
Q 025765 194 YC-VCNQVS--YGEMVACDNPNCKIEWFHFGCV--GLKEQPKGKWYCPDCAA 240 (248)
Q Consensus 194 ~C-~C~~~~--~g~mi~Cd~~~C~~~WfH~~Cv--gl~~~p~~~w~C~~C~~ 240 (248)
+| +|+... .+.||.||. |+ .+||+.|+ +|...|.|.|||+.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~--C~-~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDS--CD-RGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTT--TC-CEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCC--CC-CeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57 888753 368999999 77 99999999 68889999999999975
No 46
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.56 E-value=1.5e-08 Score=97.12 Aligned_cols=36 Identities=36% Similarity=1.078 Sum_probs=31.3
Q ss_pred CCceecCCCCCCCcceecccCCCCcCC---CCceeCCCCccc
Q 025765 203 GEMVACDNPNCKIEWFHFGCVGLKEQP---KGKWYCPDCAAL 241 (248)
Q Consensus 203 g~mi~Cd~~~C~~~WfH~~Cvgl~~~p---~~~w~C~~C~~~ 241 (248)
..||+||+ |. +|||+.|||++..+ .+.|+||.|...
T Consensus 56 ~~mI~CD~--C~-~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 56 FQWIGCDS--CQ-TWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TSEEECTT--TC-CEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CCEEECCC--CC-cCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 57999999 77 99999999999853 479999999864
No 47
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.30 E-value=1.5e-07 Score=72.67 Aligned_cols=45 Identities=31% Similarity=0.852 Sum_probs=37.6
Q ss_pred ee-eeCCCCC-CCceecCCCCCCCcceecccCC--CCcCCCCceeCCCCccc
Q 025765 194 YC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 194 ~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~ 241 (248)
+| +|++... ..||.||. |. .|||..|++ |+..|.+.|||+.|...
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDT--CD-KGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSS--SC-CEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCC--CC-cHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 56 7887743 46999999 77 999999997 88889999999999654
No 48
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.22 E-value=1.9e-07 Score=78.61 Aligned_cols=37 Identities=27% Similarity=0.861 Sum_probs=30.4
Q ss_pred CCceecCCCCCCCcceecccCCCCcC--------C-CCceeCCCCcccc
Q 025765 203 GEMVACDNPNCKIEWFHFGCVGLKEQ--------P-KGKWYCPDCAALK 242 (248)
Q Consensus 203 g~mi~Cd~~~C~~~WfH~~Cvgl~~~--------p-~~~w~C~~C~~~~ 242 (248)
+.||+||. |. .|||..|+|++.. | ...|+||.|....
T Consensus 19 ~~MIqCd~--C~-~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 19 SKMMQCGK--CD-RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCEEECTT--TC-CEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CCeEECCC--CC-cccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 57999999 66 9999999999862 2 1379999998654
No 49
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.05 E-value=3.6e-06 Score=64.83 Aligned_cols=46 Identities=26% Similarity=0.813 Sum_probs=37.5
Q ss_pred CCcee-eeCCCCC-CCceecCCCCCCCcceecccCCCCcCC--CCceeCCCCc
Q 025765 191 EPTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVGLKEQP--KGKWYCPDCA 239 (248)
Q Consensus 191 ~~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvgl~~~p--~~~w~C~~C~ 239 (248)
+..+| +|+.... .+||.|+. |+ ..||+.|+++...+ .+.|+|+.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTT--CG-QHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSS--SC-CEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCC--CC-CCcChHHhCCccccccccCccCCcCC
Confidence 35677 9998854 46899999 88 99999999977654 6899999985
No 50
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.03 E-value=8.6e-07 Score=71.69 Aligned_cols=46 Identities=28% Similarity=0.754 Sum_probs=39.1
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccCC--CC-----c--CCCCceeCCCCcccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG--LK-----E--QPKGKWYCPDCAALK 242 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg--l~-----~--~p~~~w~C~~C~~~~ 242 (248)
..|| +|... |++|+||. || .-||..|+. |. . .|.+.|+|+.|..++
T Consensus 63 ~d~C~vC~~G--G~LlcCD~--Cp-r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 63 DEQCRWCAEG--GNLICCDF--CH-NAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp BCSCSSSCCC--SSEEECSS--SC-CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCeecccCCC--CcEEeCCC--CC-CeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 5789 99988 99999999 99 899999996 32 2 478999999998654
No 51
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.01 E-value=4.9e-07 Score=71.99 Aligned_cols=49 Identities=27% Similarity=0.666 Sum_probs=40.5
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCC-------CCcC--CCCceeCCCCccccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG-------LKEQ--PKGKWYCPDCAALKN 243 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg-------l~~~--p~~~w~C~~C~~~~~ 243 (248)
....|| +|..+ |++|+||. || .-||..|+. +... |.+.|+|+.|..++.
T Consensus 55 g~~~~C~vC~dG--G~LlcCd~--Cp-r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 55 GMDEQCRWCAEG--GNLICCDF--CH-NAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp SCBSSCTTTCCC--SEEEECSS--SS-CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCcCeecCCC--CeeEecCC--Cc-hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 346789 99988 99999998 99 899999996 3333 789999999987654
No 52
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.99 E-value=1.3e-06 Score=68.01 Aligned_cols=44 Identities=32% Similarity=0.742 Sum_probs=35.5
Q ss_pred cee-eeCCCC--------CCCceecCCCCCCCcceecccCCCC-----cCCCCceeCCCCc
Q 025765 193 TYC-VCNQVS--------YGEMVACDNPNCKIEWFHFGCVGLK-----EQPKGKWYCPDCA 239 (248)
Q Consensus 193 ~~C-~C~~~~--------~g~mi~Cd~~~C~~~WfH~~Cvgl~-----~~p~~~w~C~~C~ 239 (248)
.+| +|..+. .++||.|+. |+ ..||..|+++. ..+.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD--CG-RSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS--SC-CEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC--CC-CccchhhCCChhhhhhccCCCccCccccC
Confidence 467 887654 258999999 88 99999999987 3567899999884
No 53
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.94 E-value=3.5e-06 Score=71.77 Aligned_cols=47 Identities=26% Similarity=0.743 Sum_probs=32.8
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceeccc-CCCCcCCCCceeCCCCcccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGC-VGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~C-vgl~~~p~~~w~C~~C~~~~ 242 (248)
..+| +|+++ |+||+||+ |+..++..=. .++...|.|.|+||.|....
T Consensus 7 ~~~C~~C~~~--g~ll~Cd~--C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG--GDLLCCEK--CPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC--EEEEECSS--SSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC--CceEEcCC--CCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 5678 99987 88999999 8800000000 06888999999999998653
No 54
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.87 E-value=2.4e-06 Score=66.21 Aligned_cols=45 Identities=22% Similarity=0.639 Sum_probs=36.0
Q ss_pred Ccee-eeCCCC-------CCCceecCCCCCCCcceecccCCCCc-----CCCCceeCCCCc
Q 025765 192 PTYC-VCNQVS-------YGEMVACDNPNCKIEWFHFGCVGLKE-----QPKGKWYCPDCA 239 (248)
Q Consensus 192 ~~~C-~C~~~~-------~g~mi~Cd~~~C~~~WfH~~Cvgl~~-----~p~~~w~C~~C~ 239 (248)
..+| +|.... .++||.|++ |+ .+||.+|+++.. .+.+.|+|+.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCAD--CG-NSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTT--TC-CEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhh--cC-CCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3567 887652 358999999 88 999999999753 467899999995
No 55
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=97.18 E-value=0.00022 Score=59.44 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=30.2
Q ss_pred CCceeeeCCCCC--CCceecCCCCCCCcceecccCCCCc---CCCC---ceeCCCCccc
Q 025765 191 EPTYCVCNQVSY--GEMVACDNPNCKIEWFHFGCVGLKE---QPKG---KWYCPDCAAL 241 (248)
Q Consensus 191 ~~~~C~C~~~~~--g~mi~Cd~~~C~~~WfH~~Cvgl~~---~p~~---~w~C~~C~~~ 241 (248)
...||.|+.+.. -.|++|+. |. .|||..|+.... .|-. .+.|..|...
T Consensus 4 ~~~yCYCG~~~~~~~~mLqC~~--C~-qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 4 QAGSVDEENGRQLGEVELQCGI--CT-KWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp -------CTTCCTTSCEEECTT--TC-CEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred eeeEEEcCCCCCCCceeEeecc--cc-ceecHHHhcccccCccccceeEEEEccccCCC
Confidence 357999999843 35999999 88 999999997433 2312 4679999753
No 56
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=96.95 E-value=0.00045 Score=53.21 Aligned_cols=36 Identities=28% Similarity=0.770 Sum_probs=27.4
Q ss_pred CceecCCCCCCCcceecccCCCCcC------CCCceeCCCCcccc
Q 025765 204 EMVACDNPNCKIEWFHFGCVGLKEQ------PKGKWYCPDCAALK 242 (248)
Q Consensus 204 ~mi~Cd~~~C~~~WfH~~Cvgl~~~------p~~~w~C~~C~~~~ 242 (248)
.||.|+. |. .|||..|+++... ..+.|+||.|....
T Consensus 74 ~m~~C~~--C~-~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 74 KLMECCI--CN-EIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp SCEEETT--TC-CEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred ceEEeee--cC-CeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 4999999 77 9999999997642 24569999998653
No 57
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.61 E-value=0.0088 Score=43.85 Aligned_cols=46 Identities=28% Similarity=0.756 Sum_probs=36.2
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccC---C-----------CCcCCCCceeCCCCcc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCV---G-----------LKEQPKGKWYCPDCAA 240 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cv---g-----------l~~~p~~~w~C~~C~~ 240 (248)
...| ||..-..++++.|.. |. +-||..|+ | +...+..-|.|+.|..
T Consensus 15 D~~C~VC~~~t~~~l~pCRv--C~-RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRV--CT-RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSS--SS-SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CcccCccccccccceecccc--cc-ccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 4567 999988899999999 77 88999998 2 1112456899999953
No 58
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=93.59 E-value=0.014 Score=47.65 Aligned_cols=49 Identities=31% Similarity=0.714 Sum_probs=39.0
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCC--Cc------CCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGL--KE------QPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl--~~------~p~~~w~C~~C~~~~ 242 (248)
-..|| +|... |++|.|||.+|+ .-|=..||.+ .. ...+.|.|--|.+.+
T Consensus 78 ~~~yC~wC~~G--g~l~~Cdn~~C~-r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 78 YQSYCTICCGG--REVLMCGNNNCC-RCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SBSSCTTTSCC--SEEEECSSTTTC-CEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CcceeeEecCC--CeEEeeCCCCCC-CchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 46789 99987 899999988899 8899999831 11 246899999998765
No 59
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=92.81 E-value=0.025 Score=52.36 Aligned_cols=49 Identities=27% Similarity=0.769 Sum_probs=38.9
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCc--------CCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKE--------QPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~--------~p~~~w~C~~C~~~~ 242 (248)
-..|| +|.+. |++|+|||++|+ .-|=..|+...- ...+.|.|--|...+
T Consensus 92 ~~~yCr~C~~G--g~l~~Cdn~~C~-r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSG--ETLLICGNPDCT-RCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCC--SSCEECCSTTCC-CEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCC--CeEEEeCCCCCC-cchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 46789 99987 899999988899 889899984222 125789999998764
No 60
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=92.31 E-value=0.041 Score=40.44 Aligned_cols=30 Identities=33% Similarity=0.854 Sum_probs=26.2
Q ss_pred cee-eeCCCCCCCceecCCCCCCCcceecccC
Q 025765 193 TYC-VCNQVSYGEMVACDNPNCKIEWFHFGCV 223 (248)
Q Consensus 193 ~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cv 223 (248)
+-| +|++...|--|+|...+|. .+||+.|.
T Consensus 18 l~C~iC~~~~~GAciqC~~~~C~-~~fHv~CA 48 (87)
T 2lq6_A 18 LTCYLCKQKGVGASIQCHKANCY-TAFHVTCA 48 (87)
T ss_dssp CCBTTTTBCCSSCEEECSCTTTC-CEEEHHHH
T ss_pred CCCcCCCCCCCcEeEecCCCCCC-CcCcHHHH
Confidence 446 9988766889999999999 99999996
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.00 E-value=0.04 Score=37.50 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=30.2
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCC--CcceecccCCCCcCCCCceeCCCCccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCK--IEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~--~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
++...| ||.....+++| --|.|. +.|||..|+.-=-...+.+.||.|...
T Consensus 4 ~~~~~CrIC~~~~~~~l~--~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERF--RACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECSCCCC--CSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCCCcee--cCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 345678 99766444443 223355 249999999411111246899999765
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.23 E-value=11 Score=35.98 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=13.3
Q ss_pred HHHHHHHH---hHHHHHHHHHHHHHHH
Q 025765 21 VRDAQMQC---FFVHTLAEIQRQNEQR 44 (248)
Q Consensus 21 EL~r~~~~---elD~~~qel~~~~~~~ 44 (248)
+||-.|.. +|..++.+|+.++++.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 45555555 5555666666554444
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.50 E-value=0.61 Score=33.30 Aligned_cols=50 Identities=14% Similarity=0.395 Sum_probs=28.4
Q ss_pred CCcee-eeCCCCC-C-CceecCCCCCC--CcceecccCCCCcCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSY-G-EMVACDNPNCK--IEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~-g-~mi~Cd~~~C~--~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
+...| ||..... + .+|. -|.|. ..|||..|+.-=-...+...||.|+..-
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~--pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLIT--PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEEC--SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCCeeEe--ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 34567 9976532 3 3442 23343 2799999994111112346899998653
No 64
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.44 E-value=2.6 Score=28.33 Aligned_cols=50 Identities=22% Similarity=0.563 Sum_probs=31.2
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCCC-CcCCCCceeCCCCcccccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGL-KEQPKGKWYCPDCAALKNR 244 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl-~~~p~~~w~C~~C~~~~~~ 244 (248)
.+...| +|.......++. . |. ..||..|+.- -....+...||.|+..-..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTI--D--CG-HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEEC--T--TC-CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEc--C--CC-ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345678 998874433332 4 66 6699999852 1122356789999876543
No 65
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=75.33 E-value=3.7 Score=29.08 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=30.3
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCC-------CCcC----CCCceeCCCCcccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG-------LKEQ----PKGKWYCPDCAALK 242 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg-------l~~~----p~~~w~C~~C~~~~ 242 (248)
.....| .|+++-++.+|.-.+ .-||..|.. |... ..+..||..|-...
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 82 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARD-----KYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARAR 82 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSS-----CEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHH
T ss_pred CcCCCcccCCCEecccEEEECC-----ceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 345678 999887776666554 346877752 2221 25778998886543
No 66
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=68.98 E-value=3.5 Score=28.75 Aligned_cols=33 Identities=24% Similarity=0.618 Sum_probs=20.2
Q ss_pred CCceecCCCCCCCcceecccCCCCc-CCCCceeCCC
Q 025765 203 GEMVACDNPNCKIEWFHFGCVGLKE-QPKGKWYCPD 237 (248)
Q Consensus 203 g~mi~Cd~~~C~~~WfH~~Cvgl~~-~p~~~w~C~~ 237 (248)
...|+||++.|. .|=.+.= ++.. .-.++|||..
T Consensus 16 ~~WVQCd~p~C~-KWR~LP~-~~~~~~lpd~W~C~m 49 (69)
T 2e61_A 16 LVWVQCSFPNCG-KWRRLCG-NIDPSVLPDNWSCDQ 49 (69)
T ss_dssp CCEEECSSTTTC-CEEECCS-SCCTTTSCTTCCGGG
T ss_pred CeEEEeCccccC-cccCCcc-ccccccCCCcCEeCC
Confidence 357999965588 8865422 1111 1246899964
No 67
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.66 E-value=2.2 Score=29.36 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=29.6
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCCC--Cc--CCCCceeCCCCcccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGL--KE--QPKGKWYCPDCAALK 242 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl--~~--~p~~~w~C~~C~~~~ 242 (248)
.+...| +|.......++. . |. ..||..|+.- .. ...+...||.|+..-
T Consensus 17 ~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSL--D--CG-HSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCC--S--SS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred cCCCCCCCCCcccCCceeC--C--CC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 345678 998875433322 3 55 6688899842 11 124568899998654
No 68
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.24 E-value=7.7 Score=28.14 Aligned_cols=46 Identities=26% Similarity=0.678 Sum_probs=34.5
Q ss_pred CceeeeCCCC-C----C--CceecCCCCCCCcceecccCCCCcCCCCceeCCCCcc
Q 025765 192 PTYCVCNQVS-Y----G--EMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAA 240 (248)
Q Consensus 192 ~~~C~C~~~~-~----g--~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~ 240 (248)
...|+|.++- + | +||.|.. |--.--|..|..|.. ....|.|..|..
T Consensus 26 A~~Clc~~GR~~~~~~~~W~L~lC~~--Cgs~gtH~~Cs~l~~-~~~~weC~~C~~ 78 (85)
T 1weq_A 26 APICLYEQGRDSFEDEGRWRLILCAT--CGSHGTHRDCSSLRP-NSKKWECNECLP 78 (85)
T ss_dssp CSCCCSTTCSSCCBSSSTTBCEECSS--SCCCEECSGGGTCCT-TCSCCCCTTTSC
T ss_pred ccccCCCCCcccccCCCCEEEEeCcc--cCCchhHHHHhCCcC-CCCCEECCcCcc
Confidence 5568886652 2 2 5899999 665678999999864 346899999975
No 69
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.80 E-value=3.1 Score=28.32 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=29.3
Q ss_pred CCCcee-eeCCCC-CCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccc
Q 025765 190 NEPTYC-VCNQVS-YGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKN 243 (248)
Q Consensus 190 ~~~~~C-~C~~~~-~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~ 243 (248)
.+...| +|.... .++.+..-. |. --||..|+.--.. ....||.|+..-.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~--C~-H~fh~~Ci~~w~~--~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLP--CN-HEFHAKCVDKWLK--ANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEET--TT-EEEETTHHHHHHH--HCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEEC--CC-CHhHHHHHHHHHH--cCCcCcCcCCcCC
Confidence 345668 998663 244444444 55 6699999841110 1247999987643
No 70
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=61.26 E-value=5.9 Score=26.95 Aligned_cols=47 Identities=28% Similarity=0.431 Sum_probs=27.3
Q ss_pred CCcee-eeCCCCC-CCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
+...| ||..... +..+.--. |. ..||..|+.--. .....||.|+..-
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~--C~-H~fc~~Ci~~~~--~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP--CN-HLFHDSCIVPWL--EQHDSCPVCRKSL 62 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT--TS-CEEETTTTHHHH--TTTCSCTTTCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeC--CC-CeecHHHHHHHH--HcCCcCcCcCCcc
Confidence 35567 9977643 33322223 55 679999984111 1125799998654
No 71
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=59.78 E-value=2.5 Score=31.20 Aligned_cols=31 Identities=26% Similarity=0.685 Sum_probs=20.5
Q ss_pred CCCcceecccCC--CCc-CCCCceeCCCCcccccc
Q 025765 213 CKIEWFHFGCVG--LKE-QPKGKWYCPDCAALKNR 244 (248)
Q Consensus 213 C~~~WfH~~Cvg--l~~-~p~~~w~C~~C~~~~~~ 244 (248)
|. -+||..|+. +.. .+.....||.|+..-..
T Consensus 61 C~-H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 61 CS-HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SC-CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CC-CcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 66 789999985 211 11346789999876443
No 72
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=59.61 E-value=2.3 Score=28.37 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=27.4
Q ss_pred CCcee-eeCCCCC-CCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
+...| +|..... +..+..-. |. -.||..|+.--.. ....||.|+..-
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~--C~-H~fc~~Ci~~~~~--~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP--CM-HLFHQVCVDQWLI--TNKKCPICRVDI 61 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT--TS-CEEEHHHHHHHHH--HCSBCTTTCSBS
T ss_pred CCCCCeeCCccccCCCcEEEeC--CC-CHHHHHHHHHHHH--cCCCCcCcCccc
Confidence 34567 9977532 33333344 65 6799999841110 023599998664
No 73
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=58.57 E-value=2.5 Score=28.91 Aligned_cols=47 Identities=15% Similarity=0.465 Sum_probs=28.3
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
+...| +|.......+ .-.. |. ..||..|+.---...+...||.|+..
T Consensus 14 ~~~~C~IC~~~~~~p~-~~~~--Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMTDAV-VIPC--CG-NSYCDECIRTALLESDEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCTTCE-ECSS--SC-CEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred CCCCCcCCChHHhCCe-EcCC--CC-CHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence 45667 9987654333 3233 55 67999998421111235689999875
No 74
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.45 E-value=5.3 Score=26.20 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=28.1
Q ss_pred CCCcee-eeCCCCC-----CCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccc
Q 025765 190 NEPTYC-VCNQVSY-----GEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKN 243 (248)
Q Consensus 190 ~~~~~C-~C~~~~~-----g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~ 243 (248)
.+...| ||..... +.++..-. |. -.||..|+.--.. ....||.|+..-.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~--Cg-H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE--CG-HVFCSQCLRDSLK--NANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS--SS-CEEEHHHHHHHHH--HCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC--CC-ChhcHHHHHHHHH--cCCCCCCCCCccC
Confidence 345667 9987632 23333344 55 6799999831100 1237999987654
No 75
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=57.04 E-value=6.7 Score=35.92 Aligned_cols=51 Identities=31% Similarity=0.544 Sum_probs=31.5
Q ss_pred CCcee-eeCCC--CCCCc--eecCCCCCCCcceecccCC--C-----CcCC--CCceeCCCCcccc
Q 025765 191 EPTYC-VCNQV--SYGEM--VACDNPNCKIEWFHFGCVG--L-----KEQP--KGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~--~~g~m--i~Cd~~~C~~~WfH~~Cvg--l-----~~~p--~~~w~C~~C~~~~ 242 (248)
...-| +|-.. ..|.+ ..|++..|. .-||..|+- + +..- .-.--||.|+.+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~-h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCV-LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCC-CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred CCccCcccceeecCCCCCccccccCCccC-CccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 34556 77554 22444 579987798 779999992 1 1110 1235699998753
No 76
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.90 E-value=3.2 Score=28.87 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=29.1
Q ss_pred CCcee-eeCCCCCC-C--ceecCCCCCCCcceecccCCCC-cCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSYG-E--MVACDNPNCKIEWFHFGCVGLK-EQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~g-~--mi~Cd~~~C~~~WfH~~Cvgl~-~~p~~~w~C~~C~~~~ 242 (248)
+...| +|...... + .+.- . |. ..||..|+.-- ....+...||.|+..-
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-~--Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLL-H--CG-HTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEEC-S--SS-CEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEEC-C--CC-ChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 35668 99877432 1 2222 3 65 78999998411 1112468899998754
No 77
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.52 E-value=54 Score=31.37 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 025765 99 VDTHIQQLDQYL 110 (248)
Q Consensus 99 vd~hir~LD~dl 110 (248)
+-..|+|||.||
T Consensus 143 q~~kIQRLEvDI 154 (562)
T 3ghg_A 143 QLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334455555554
No 78
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=56.08 E-value=5.5 Score=30.04 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred eecCCCCCCCcceecccCC--CCcCCCCceeC
Q 025765 206 VACDNPNCKIEWFHFGCVG--LKEQPKGKWYC 235 (248)
Q Consensus 206 i~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C 235 (248)
+.|.. || .-||..|+. |...+.+.|+|
T Consensus 70 ~~C~~--Cp-~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 70 SFCEF--CP-HSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp EECSS--SS-CEECTTTCTTSCEECTTTTCEE
T ss_pred cCcCC--CC-cchhhhccCCcceecCCCCcee
Confidence 88999 99 889999995 55567888987
No 79
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.02 E-value=3.1 Score=28.55 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=29.4
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCCC--Cc--CCCCceeCCCCcccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGL--KE--QPKGKWYCPDCAALK 242 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl--~~--~p~~~w~C~~C~~~~ 242 (248)
.+...| +|.......++. . |. ..||..|+.- .. ...+...||.|+..-
T Consensus 17 ~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSA--D--CN-HSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CTTTSCTTTCSCCSSCEEC--T--TS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred ccCCCCcCCChhhCcceeC--C--CC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 345678 998774433321 3 55 5688899841 11 123578999998664
No 80
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=56.00 E-value=5.4 Score=23.38 Aligned_cols=13 Identities=23% Similarity=0.777 Sum_probs=9.9
Q ss_pred CCceeCCCCcccc
Q 025765 230 KGKWYCPDCAALK 242 (248)
Q Consensus 230 ~~~w~C~~C~~~~ 242 (248)
.|+|+|+.|..-.
T Consensus 3 ~gDW~C~~C~~~N 15 (32)
T 2lk0_A 3 FEDWLCNKCCLNN 15 (32)
T ss_dssp CSEEECTTTCCEE
T ss_pred CCCCCcCcCcCCc
Confidence 5899999996543
No 81
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.57 E-value=1.3e+02 Score=27.44 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 025765 101 THIQQLDQYL 110 (248)
Q Consensus 101 ~hir~LD~dl 110 (248)
..|+|||.+|
T Consensus 148 ~kiqRLE~~I 157 (390)
T 1deq_A 148 VDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHH
Confidence 3455555555
No 82
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.47 E-value=5.6 Score=25.91 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=26.0
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCCCC-cCCCCceeCCCC
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLK-EQPKGKWYCPDC 238 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~-~~p~~~w~C~~C 238 (248)
.+...| +|.......++. . |. -.||..|+.-- ....+...||.|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTI--D--CG-HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEEC--T--TS-SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEe--C--CC-CcchHHHHHHHHHcCCCCCcCcCC
Confidence 345668 998775443332 4 66 67999998411 112245678877
No 83
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=50.69 E-value=10 Score=25.63 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=28.7
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCC--CcC---CCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGL--KEQ---PKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl--~~~---p~~~w~C~~C~~~~ 242 (248)
+...| +|.......++. . |. ..||..|+.- ... ..+...||.|+..-
T Consensus 11 ~~~~C~IC~~~~~~p~~l--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSL--D--CG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECSSCCCC--S--SS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccCCeeEC--C--CC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 35668 998764333321 3 55 5688889852 211 13478999998654
No 84
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.67 E-value=7.6 Score=26.01 Aligned_cols=44 Identities=25% Similarity=0.371 Sum_probs=26.5
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
...| +|....... +.. . |. ..||..|+.--.. ....||.|+..-
T Consensus 15 ~~~C~IC~~~~~~~-~~~-~--Cg-H~fC~~Ci~~~~~--~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTCVHP-VSL-P--CK-HVFCYLCVKGASW--LGKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBCSSE-EEE-T--TT-EEEEHHHHHHCTT--CSSBCSSSCCBC
T ss_pred CCCCccCCcccCCC-EEc-c--CC-CHHHHHHHHHHHH--CCCcCcCcCchh
Confidence 4567 998764332 222 3 66 6699999841111 126899998753
No 85
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.54 E-value=6.1 Score=26.59 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=26.5
Q ss_pred Ccee-eeCCCCC-CCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 192 PTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 192 ~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
...| +|..... +..+.--. |. ..||..|+.--.. ....||.|+..-
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~--C~-H~f~~~Ci~~~~~--~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICP--CK-HAFHRKCLIKWLE--VRKVCPLCNMPV 62 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEET--TT-EEEEHHHHHHHHH--HCSBCTTTCCBC
T ss_pred CCCCcCCCcccCCCCcEEEcC--CC-CEecHHHHHHHHH--cCCcCCCcCccc
Confidence 4567 9987743 33332113 55 6799999841110 113799998653
No 86
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=50.42 E-value=5.2 Score=23.66 Aligned_cols=12 Identities=25% Similarity=1.054 Sum_probs=9.7
Q ss_pred CCceeCCCCccc
Q 025765 230 KGKWYCPDCAAL 241 (248)
Q Consensus 230 ~~~w~C~~C~~~ 241 (248)
.|+|.|+.|-.-
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 589999999644
No 87
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.40 E-value=62 Score=22.61 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025765 76 DEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRR 119 (248)
Q Consensus 76 ~~~~~~~~l~dEKv~lA~~~~~lvd~hir~LD~dl~~~e~el~~ 119 (248)
..|+.+++..+|.+..=.......++-|...|..|..|..+|..
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888888888888888888888888887753
No 88
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=50.11 E-value=6.3 Score=24.76 Aligned_cols=45 Identities=29% Similarity=0.459 Sum_probs=26.1
Q ss_pred Ccee-eeCCCCC-CC-ceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 192 PTYC-VCNQVSY-GE-MVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 192 ~~~C-~C~~~~~-g~-mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
...| +|..... ++ .+.... |. -.||..|+.--. .....||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~w~--~~~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPR--CG-HGFHAECVDMWL--GSHSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSS--SC-CEECTTHHHHTT--TTCCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCC--CC-CcccHHHHHHHH--HcCCcCcCCCCE
Confidence 3456 8876632 32 233333 55 679999984111 123579999854
No 89
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=48.44 E-value=3.9 Score=24.12 Aligned_cols=14 Identities=29% Similarity=0.992 Sum_probs=11.1
Q ss_pred CCceeCCCCccccc
Q 025765 230 KGKWYCPDCAALKN 243 (248)
Q Consensus 230 ~~~w~C~~C~~~~~ 243 (248)
.|+|-|..|.++.+
T Consensus 16 egdwcchkcvpegk 29 (36)
T 4b2u_A 16 EGDWCCHKCVPEGK 29 (36)
T ss_dssp GCCSSSSEEEEETT
T ss_pred ccCeeeecccccCc
Confidence 68899999987654
No 90
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.07 E-value=9.6 Score=24.03 Aligned_cols=43 Identities=21% Similarity=0.472 Sum_probs=24.8
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCc-CCCCceeCCCC
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKE-QPKGKWYCPDC 238 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~-~p~~~w~C~~C 238 (248)
+...| +|.......++. . |. -.||..|+.--. .......||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVII--E--CG-HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCC--S--SC-CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeC--C--CC-CccCHHHHHHHHHhcCCCCCCCCC
Confidence 45667 998775433321 3 55 568999984211 11245678877
No 91
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.86 E-value=14 Score=25.05 Aligned_cols=45 Identities=16% Similarity=0.471 Sum_probs=28.3
Q ss_pred cee-eeCCCCCCCceecCCCCCCCcceecccCC-------CC-cC----CCCceeCCCCcccc
Q 025765 193 TYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG-------LK-EQ----PKGKWYCPDCAALK 242 (248)
Q Consensus 193 ~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg-------l~-~~----p~~~w~C~~C~~~~ 242 (248)
..| .|+++-.+.+|.-.+ ..||..|.. |. .. ..+.-||..|-...
T Consensus 6 ~~C~~C~~~I~~~~v~a~~-----~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGE-----KHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSS-----CCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcccCCCEecCeeEEeCC-----CCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 357 888887776665444 346877652 33 11 25689999997543
No 92
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.43 E-value=1.7e+02 Score=26.79 Aligned_cols=31 Identities=13% Similarity=-0.037 Sum_probs=15.3
Q ss_pred CChHHHHHHHHH--hHHHHHHHHHHHHHHHHHH
Q 025765 17 FPPLVRDAQMQC--FFVHTLAEIQRQNEQRCEQ 47 (248)
Q Consensus 17 ~lP~EL~r~~~~--elD~~~qel~~~~~~~~~~ 47 (248)
++-+.|+..+.. +.|-.+.++..+++++...
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~ 124 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINEDLRSRIEI 124 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 334444444444 5555555555555555544
No 93
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=45.36 E-value=6.3 Score=28.03 Aligned_cols=47 Identities=23% Similarity=0.572 Sum_probs=28.0
Q ss_pred CCcee-eeCCCC-CCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVS-YGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~-~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
+...| +|.... .++.+..-. |. -.||..|+.--- .....||.|+..-
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~--C~-H~Fh~~Ci~~wl--~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELP--CH-HYFHKPCVSIWL--QKSGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEET--TT-EEEEHHHHHHHH--TTTCBCTTTCCBS
T ss_pred CCCCCcccChhhcCCCcEEecC--CC-ChHHHHHHHHHH--HcCCcCcCcCccC
Confidence 35567 997653 344333334 66 679999984111 1124899998653
No 94
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.06 E-value=5.8 Score=26.14 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=28.8
Q ss_pred CCCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccc
Q 025765 190 NEPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKN 243 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~ 243 (248)
.+...| +|.......++ -. |. ..||..|+.--.. .+...||.|+..-.
T Consensus 13 ~~~~~C~IC~~~~~~p~~--~~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ--TE--CG-HRFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESSCCC--CS--SS-CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcCeeE--CC--CC-CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 445678 99877433322 13 55 5688888842111 34567999987654
No 95
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.24 E-value=44 Score=22.93 Aligned_cols=47 Identities=23% Similarity=0.567 Sum_probs=29.8
Q ss_pred CCcee-eeCCCCC-CCceecCCCCCCCcceecccCC-------CCc------CCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVG-------LKE------QPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvg-------l~~------~p~~~w~C~~C~~~~ 242 (248)
....| .|+++-+ +++|.-.+ .-||..|.. |.. ...+..||..|-...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~-----~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNG-----HFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTT-----BCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CCCCCcccCCCcccceEEEECC-----CeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 35568 9998764 67776555 446877752 222 135788999887543
No 96
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.16 E-value=31 Score=24.39 Aligned_cols=33 Identities=36% Similarity=0.819 Sum_probs=25.9
Q ss_pred CCcee-eeCCCCCC---CceecCCCCCCCcceecccCCCC
Q 025765 191 EPTYC-VCNQVSYG---EMVACDNPNCKIEWFHFGCVGLK 226 (248)
Q Consensus 191 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~WfH~~Cvgl~ 226 (248)
.+++| +|+..-+| +-+.|.. |. --+|-.|+...
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~--C~-~~~Hk~C~~~v 63 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDT--CD-MNVHKQCVINV 63 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSS--SC-CEEETTTTTTS
T ss_pred CCcCCcccCccccccccCCCcCCC--cC-CccCHhHHhhc
Confidence 47899 99988776 5678998 77 45999998653
No 97
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.71 E-value=9.6 Score=26.46 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=17.7
Q ss_pred CCCcceecccCC--CCcCCCCceeCCCCcccc
Q 025765 213 CKIEWFHFGCVG--LKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 213 C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~~ 242 (248)
|. --||..|+. +... -.||.|+..-
T Consensus 48 C~-H~FH~~Ci~~Wl~~~----~~CP~CR~~~ 74 (81)
T 2ecl_A 48 CN-HSFHNCCMSLWVKQN----NRCPLCQQDW 74 (81)
T ss_dssp TS-CEEEHHHHHHHTTTC----CBCTTTCCBC
T ss_pred CC-CccChHHHHHHHHhC----CCCCCcCCCc
Confidence 55 679999985 3332 3899998764
No 98
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.63 E-value=25 Score=22.37 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=26.0
Q ss_pred CCCcee-eeCCCCCCC-ceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 190 NEPTYC-VCNQVSYGE-MVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 190 ~~~~~C-~C~~~~~g~-mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
.+...| +|....... ++. |. --|+..|+.- ....||.|+..-
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~-----Cg-H~fC~~Ci~~-----~~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLP-----CL-HTLCSGCLEA-----SGMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCST-----TS-CCSBTTTCSS-----SSSSCSSCCSSS
T ss_pred ccCCCceEeCCccCCeEEcC-----CC-CcccHHHHcc-----CCCCCCcCCcEe
Confidence 345667 998764432 333 44 4477888744 356799998654
No 99
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=39.15 E-value=8.1 Score=29.47 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=0.0
Q ss_pred CCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 213 CKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 213 C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
|. -.||..|+.---. ..-.||.|+.+
T Consensus 84 C~-H~FH~~CI~~Wl~--~~~~CP~Cr~~ 109 (117)
T 4a0k_B 84 CN-HAFHFHCISRWLK--TRQVCPLDNRE 109 (117)
T ss_dssp -----------------------------
T ss_pred cC-ceEcHHHHHHHHH--cCCcCCCCCCe
Confidence 55 6799999842111 13469999876
No 100
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.90 E-value=9.3 Score=32.63 Aligned_cols=46 Identities=24% Similarity=0.632 Sum_probs=30.1
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
-..| +|...-. .-+.|.+ |. .-||..|+.---...+.--||.|...
T Consensus 180 i~~C~iC~~iv~-~g~~C~~--C~-~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLI-QGQSCET--CG-IRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCS-SCEECSS--SC-CEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCcCcchhhHHh-CCcccCc--cC-hHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 4557 9988732 1278888 77 66999999532222345679999653
No 101
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=36.13 E-value=8.8 Score=28.56 Aligned_cols=24 Identities=38% Similarity=0.790 Sum_probs=17.4
Q ss_pred CCCcceecccCC--CCcCCCCceeCCCCccc
Q 025765 213 CKIEWFHFGCVG--LKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 213 C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~ 241 (248)
|. .-||..|+. |.. .-.||.|+.+
T Consensus 73 C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 73 CN-HAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp TS-CEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred cC-cEECHHHHHHHHHc----CCcCcCCCCc
Confidence 66 679999984 222 3579999876
No 102
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.45 E-value=8.1 Score=26.53 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=27.3
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
+...| +|.......++ -. |. ..||..|+.--.. ....||.|+..-
T Consensus 14 ~~~~C~IC~~~~~~p~~--~~--Cg-H~fC~~Ci~~~~~--~~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV--TK--CR-HYFCESCALEHFR--ATPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCCSEEE--CT--TS-CEEEHHHHHHHHH--HCSBCSSSCCBC
T ss_pred CCCCCcCCCchhcCeeE--cc--CC-CHhHHHHHHHHHH--CCCcCCCcCccc
Confidence 45668 99877533332 23 66 6799999831111 135799998653
No 103
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=34.96 E-value=5.9 Score=24.84 Aligned_cols=45 Identities=18% Similarity=0.394 Sum_probs=26.4
Q ss_pred Ccee-eeCCCCC--CCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 192 PTYC-VCNQVSY--GEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 192 ~~~C-~C~~~~~--g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
...| +|..... +..+..-. |. -.||..|+.--.. ....||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~--Cg-H~fc~~Ci~~~~~--~~~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLP--CG-HLLHRTCYEEMLK--EGYRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECT--TS-CEEETTHHHHHHH--HTCCCTTSCCS
T ss_pred CCcCcccChhhcCCCcCeEecC--CC-CcccHHHHHHHHH--cCCcCCCCCCc
Confidence 3456 8877632 23444445 55 6799999841110 01679999764
No 104
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.80 E-value=7.5 Score=28.21 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=26.7
Q ss_pred cee-eeCCCCCCCceecCCCCCCCcceecccCCC-CcCCCCceeCCCCcccc
Q 025765 193 TYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGL-KEQPKGKWYCPDCAALK 242 (248)
Q Consensus 193 ~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl-~~~p~~~w~C~~C~~~~ 242 (248)
..| +|.......++. . |. ..||..|+.- -....+...||.|+..-
T Consensus 22 ~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELIKEPVST--K--CD-HIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCCSSCCBC--T--TS-CCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCcccChhhcCeEEC--C--CC-CHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 457 897764332221 3 55 6688888741 11223457899998654
No 105
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.01 E-value=48 Score=21.20 Aligned_cols=18 Identities=17% Similarity=0.536 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025765 99 VDTHIQQLDQYLKNFDEE 116 (248)
Q Consensus 99 vd~hir~LD~dl~~~e~e 116 (248)
+++.|..|+.||+.+|.+
T Consensus 36 lekdianlekdianlerd 53 (56)
T 3he4_A 36 LEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456666777777777664
No 106
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.36 E-value=1.6e+02 Score=21.95 Aligned_cols=45 Identities=0% Similarity=0.069 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025765 75 LDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRR 119 (248)
Q Consensus 75 ~~~~~~~~~l~dEKv~lA~~~~~lvd~hir~LD~dl~~~e~el~~ 119 (248)
+..+..|.++-++|+..+....+-+.+.+..+-..+..+...|+.
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999988887764
No 107
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.18 E-value=43 Score=22.94 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=28.6
Q ss_pred CCcee-eeCCCCC-CCceecCCCCCCCcceecccCC-------CCc---CCCCceeCCCCccc
Q 025765 191 EPTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVG-------LKE---QPKGKWYCPDCAAL 241 (248)
Q Consensus 191 ~~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvg-------l~~---~p~~~w~C~~C~~~ 241 (248)
....| .|+++-+ +++|.-.+ .-||..|.. |.. ...+..||..|-..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~-----~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~ 71 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALD-----KQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHA 71 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETT-----EEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHH
T ss_pred CCCCCcCcCCeeCCCeEEEECC-----cccccccCCcCcCCCCcCCCeEEECCEEECHHHHHH
Confidence 35668 9988764 67766554 335777762 221 12578889888644
No 108
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=30.86 E-value=72 Score=17.67 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025765 98 LVDTHIQQLDQYLKNFDEE 116 (248)
Q Consensus 98 lvd~hir~LD~dl~~~e~e 116 (248)
-+|..++||+.+..++|-+
T Consensus 5 kldanvkrlekevgklege 23 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhhh
Confidence 3566778888888887764
No 109
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.62 E-value=24 Score=24.40 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=7.6
Q ss_pred CceeCCCCcccc
Q 025765 231 GKWYCPDCAALK 242 (248)
Q Consensus 231 ~~w~C~~C~~~~ 242 (248)
|+.||..|..+.
T Consensus 27 gDLYC~rC~rE~ 38 (67)
T 2d8v_A 27 GDLYCARCFREG 38 (67)
T ss_dssp SEEECSSHHHHH
T ss_pred CceehHHHHHHH
Confidence 357777776543
No 110
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.60 E-value=30 Score=24.12 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=29.2
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccCC-------CCc----CCCCceeCCCCccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG-------LKE----QPKGKWYCPDCAAL 241 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg-------l~~----~p~~~w~C~~C~~~ 241 (248)
...| .|+++-.++.|...+ .-||..|.. |.. ...+..||..|-..
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALG-----KSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETT-----EEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred CCCCccCCCEecceEEEECC-----ccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 4568 999887777776555 346877752 322 13578889887644
No 111
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.59 E-value=27 Score=24.30 Aligned_cols=45 Identities=22% Similarity=0.690 Sum_probs=28.6
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCC--CCcCCCCceeCCCCccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~~ 241 (248)
....| +|...-.. -+.|.. |. .-||..|+. +... ..=.||.|...
T Consensus 14 ~i~~C~IC~~~i~~-g~~C~~--C~-h~fH~~Ci~kWl~~~--~~~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLIQ-GQSCET--CG-IRMHLPCVAKYFQSN--AEPRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCSS-SEECSS--SC-CEECHHHHHHHSTTC--SSCCCTTTCSC
T ss_pred CCCcCcchhhHccc-CCccCC--CC-chhhHHHHHHHHHhc--CCCCCCCCcCc
Confidence 34557 99887431 245665 76 669999995 3222 22469999754
No 112
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=30.04 E-value=20 Score=23.45 Aligned_cols=48 Identities=21% Similarity=0.490 Sum_probs=28.3
Q ss_pred CCcee-eeCCCC-----CCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccc
Q 025765 191 EPTYC-VCNQVS-----YGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKN 243 (248)
Q Consensus 191 ~~~~C-~C~~~~-----~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~ 243 (248)
+...| +|.... .+..+..-. |. -.||..|+.--.. ..-.||.|+..-.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~--Cg-H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE--CG-HVFCSQCLRDSLK--NANTCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT--TS-CEEEHHHHHHHHH--HCSBCTTTCCBCC
T ss_pred CCCCCcccChhhhccccccCCeEeCC--CC-ChHhHHHHHHHHH--cCCCCCCCCCccC
Confidence 45667 998762 133334445 55 6799999841100 1137999987654
No 113
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.85 E-value=1.6e+02 Score=21.45 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025765 100 DTHIQQLDQYLKNFDEEL 117 (248)
Q Consensus 100 d~hir~LD~dl~~~e~el 117 (248)
..+|..|..++.+|+.-|
T Consensus 68 ~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 68 LSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666665543
No 114
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=29.71 E-value=12 Score=25.38 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
+...| +|...-...++. . |. ..|+..|+.--- ..+...||.|+...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~--~--Cg-H~fc~~Ci~~~~-~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIV--S--TG-QTYERSSIQKWL-DAGHKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCCSSEEEE--T--TT-EEEEHHHHHHHH-TTTCCBCTTTCCBC
T ss_pred ccCCCCCccccccCCEEc--C--CC-CeecHHHHHHHH-HHCcCCCCCCcCCC
Confidence 45678 998874433332 3 55 678888874111 12467899998654
No 115
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.69 E-value=51 Score=22.02 Aligned_cols=45 Identities=18% Similarity=0.552 Sum_probs=27.1
Q ss_pred cee-eeCCCCCC----CceecCCCCCCCcceecccCC-------CCcC----CCCceeCCCCcccc
Q 025765 193 TYC-VCNQVSYG----EMVACDNPNCKIEWFHFGCVG-------LKEQ----PKGKWYCPDCAALK 242 (248)
Q Consensus 193 ~~C-~C~~~~~g----~mi~Cd~~~C~~~WfH~~Cvg-------l~~~----p~~~w~C~~C~~~~ 242 (248)
..| .|+++-.+ +.|.-.+ .-||..|.. |... ..+..||..|-...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~-----~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQD-----SQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETT-----EEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCC
T ss_pred CCCccCCCcccCCCCceeEEECC-----cccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhh
Confidence 356 78877554 5555554 335877652 3322 25788999887543
No 116
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.41 E-value=25 Score=23.13 Aligned_cols=46 Identities=22% Similarity=0.550 Sum_probs=28.5
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccCC-------CCcC----CCCceeCCCCcccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG-------LKEQ----PKGKWYCPDCAALK 242 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg-------l~~~----p~~~w~C~~C~~~~ 242 (248)
...| .|+++-.+++|.-.+ .-||..|.. |... ..+..||..|-...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMN-----NSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETT-----EEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CCcCccCCCEecceEEEECc-----ccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 3457 888886676666555 446877752 2221 25678888875443
No 117
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=29.10 E-value=1.7e+02 Score=21.31 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025765 73 DALDEQKHSIRI----ADEKVALAVQAYDLVDTHIQQLDQYLKNFDEEL 117 (248)
Q Consensus 73 ~I~~~~~~~~~l----~dEKv~lA~~~~~lvd~hir~LD~dl~~~e~el 117 (248)
+|+..+.+|.+| .=|.-.|-...---+...||..-.+|.+|..++
T Consensus 53 ~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 53 DFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555444 344555555555566677778888888777654
No 118
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=27.77 E-value=33 Score=23.70 Aligned_cols=33 Identities=30% Similarity=0.878 Sum_probs=25.7
Q ss_pred CCcee-eeCCCCCC---CceecCCCCCCCcceecccCCCC
Q 025765 191 EPTYC-VCNQVSYG---EMVACDNPNCKIEWFHFGCVGLK 226 (248)
Q Consensus 191 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~WfH~~Cvgl~ 226 (248)
.+++| +|...-+| +-+.|.. |. --.|-.|+...
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~--C~-~~~Hk~C~~~v 69 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQ--CN-AAIHKKCIDKV 69 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSS--SC-CEEESGGGSSC
T ss_pred CCcCccccChhhccccccccCcCC--CC-CcCCHhHHhhC
Confidence 47999 99988665 4578999 77 55999998643
No 119
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=27.59 E-value=51 Score=21.82 Aligned_cols=33 Identities=30% Similarity=0.784 Sum_probs=25.7
Q ss_pred CCcee-eeCCCCCC---CceecCCCCCCCcceecccCCCC
Q 025765 191 EPTYC-VCNQVSYG---EMVACDNPNCKIEWFHFGCVGLK 226 (248)
Q Consensus 191 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~WfH~~Cvgl~ 226 (248)
.+++| +|+..-+| +-+.|.. |. --.|-.|+...
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~--C~-~~~Hk~C~~~v 58 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDA--CG-MNVHHRCQTKV 58 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESS--SC-CEECTTTTTTS
T ss_pred CCcCchhcChhheecCCcccccCC--CC-CccCHhHHhhC
Confidence 47899 99988765 5678998 77 55999998653
No 120
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=27.24 E-value=11 Score=26.39 Aligned_cols=47 Identities=17% Similarity=0.489 Sum_probs=27.3
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL 241 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~ 241 (248)
+...| +|.......++ -.. |. .-|+..|+.-.-...+...||.|+..
T Consensus 12 ~~~~C~IC~~~~~~p~~-~~~--Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVV-IPC--CG-NSYCDECIRTALLESDEHTCPTCHQN 59 (92)
T ss_dssp TTTEETTTTEECSSCEE-CTT--TC-CEECHHHHHHHHHHCTTCCCTTTCCS
T ss_pred cCCCCCCCChhhcCceE-CCC--CC-CHHHHHHHHHHHHhcCCCcCcCCCCc
Confidence 45678 99876443332 222 44 55777887311111235789999876
No 121
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.04 E-value=25 Score=23.39 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=27.1
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCccccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKN 243 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~~ 243 (248)
+...| +|....... +.... |. .-||..|+.--.. ....||.|+..-.
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~~--Cg-H~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 14 PYILCSICKGYLIDA-TTITE--CL-HTFCKSCIVRHFY--YSNRCPKCNIVVH 61 (72)
T ss_dssp GGGSCTTTSSCCSSC-EECSS--SC-CEECHHHHHHHHH--HCSSCTTTCCCCC
T ss_pred CCCCCCCCChHHHCc-CEECC--CC-CHHHHHHHHHHHH--cCCcCCCcCcccC
Confidence 35668 997764332 22233 55 5688888731110 1357999987643
No 122
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=27.02 E-value=1.9e+02 Score=21.34 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=54.1
Q ss_pred HHHHhhh-ccCChHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHHHHHHHH
Q 025765 8 FLLTFMD-IFFPPLVRDAQMQC--FFVHTLAEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSIRI 84 (248)
Q Consensus 8 yle~fie-~~~lP~EL~r~~~~--elD~~~qel~~~~~~~~~~~l~~~~k~~~~gs~~~~~k~~~l~~~I~~~~~~~~~l 84 (248)
-+|..++ +-.|..++.|+=.. .+|-++..-...|...... |....+.++. -+.+...++.+|.+++++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~a-iaanTr~lQq----h~aRlnsqQrQI~ENhkEMKq~ 81 (114)
T 2xzr_A 7 KIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKA-IAANTRTLQQ----HSARLDSQQRQINENHKEMKQI 81 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHH-HHHhHHHHHH----HHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444 44666677766555 6666655433333322221 1111111111 1235566778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025765 85 ADEKVALAVQAYDLVDTHIQQLDQ 108 (248)
Q Consensus 85 ~dEKv~lA~~~~~lvd~hir~LD~ 108 (248)
.+.=-+|+...|-+ ++-+.||..
T Consensus 82 aaqsaaLlsk~yh~-ene~ar~kk 104 (114)
T 2xzr_A 82 EDKIEEILSKIYHI-ENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhhHH-HHHHHHHHH
Confidence 99999999988853 444444443
No 123
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.78 E-value=4e+02 Score=24.92 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025765 82 IRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEEL 117 (248)
Q Consensus 82 ~~l~dEKv~lA~~~~~lvd~hir~LD~dl~~~e~el 117 (248)
..-...-|..-+.+++.+.+.|.+|+..+..++...
T Consensus 158 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 158 NSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 334556677788888888999999999998888753
No 124
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=25.86 E-value=39 Score=23.97 Aligned_cols=31 Identities=32% Similarity=0.925 Sum_probs=22.9
Q ss_pred ceecCCCCCCCcceecccCCCCcC-------CCCceeCCC
Q 025765 205 MVACDNPNCKIEWFHFGCVGLKEQ-------PKGKWYCPD 237 (248)
Q Consensus 205 mi~Cd~~~C~~~WfH~~Cvgl~~~-------p~~~w~C~~ 237 (248)
||.|.+.+ . .|.|-.|..|.+. ...+|||..
T Consensus 38 mi~cs~g~-g-hwvhaqcm~l~e~~l~~lsq~n~ky~c~~ 75 (82)
T 2jwo_A 38 MIYCSHGD-G-HWVHAQCMDLEERTLIHLSEGSNKYYCNE 75 (82)
T ss_dssp CEECCSSS-C-CEECSGGGTCCHHHHHHHTTSSCCCCCST
T ss_pred hhhcCCCc-c-hHHHHHHhhHHHHHHHHHhcCCcEEEEcC
Confidence 89997643 3 8999999988773 245788864
No 125
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=25.30 E-value=11 Score=29.72 Aligned_cols=46 Identities=20% Similarity=0.492 Sum_probs=29.0
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
...| +|...... .+.+-. |. ..||..|+.---. .+...||.|+..-
T Consensus 54 ~~~C~IC~~~~~~-p~~~~~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN-TMTTKE--CL-HRFCADCIITALR-SGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS-EEEETT--TC-CEEEHHHHHHHHH-TTCCBCTTTCCBC
T ss_pred CCCCcccChHhhC-cCEeCC--CC-ChhHHHHHHHHHH-hCcCCCCCCCCcC
Confidence 4568 99776433 344444 66 7899999842111 2357799998654
No 126
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=25.27 E-value=35 Score=23.75 Aligned_cols=30 Identities=10% Similarity=-0.075 Sum_probs=25.7
Q ss_pred ccCChHHHHHHHHH--hHHHHHHHHHHHHHHH
Q 025765 15 IFFPPLVRDAQMQC--FFVHTLAEIQRQNEQR 44 (248)
Q Consensus 15 ~~~lP~EL~r~~~~--elD~~~qel~~~~~~~ 44 (248)
+.+||.+|+..+.. +-|-...++..++++.
T Consensus 9 L~~LP~~Lq~kV~aIV~~~PsSl~VF~~Ly~y 40 (70)
T 2lh0_A 9 LDELPESLSRKIGTVVRVLPSSLEIFEELYKY 40 (70)
T ss_dssp GGGSCHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 67999999999888 8888888888887776
No 127
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.25 E-value=42 Score=23.45 Aligned_cols=32 Identities=31% Similarity=0.909 Sum_probs=25.2
Q ss_pred CCcee-eeCCCCCC---CceecCCCCCCCcceecccCCC
Q 025765 191 EPTYC-VCNQVSYG---EMVACDNPNCKIEWFHFGCVGL 225 (248)
Q Consensus 191 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~WfH~~Cvgl 225 (248)
.+++| +|+..-+| +-+.|.. |. --+|-.|+..
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~--C~-~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQ--CN-AAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETT--TC-CEECTTGGGT
T ss_pred CCcChhhcChhhccccccccccCC--cC-CeeChhhhhh
Confidence 47899 99988765 5688999 77 4599999864
No 128
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=24.88 E-value=2.8e+02 Score=24.04 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025765 73 DALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEEL 117 (248)
Q Consensus 73 ~I~~~~~~~~~l~dEKv~lA~~~~~lvd~hir~LD~dl~~~e~el 117 (248)
++...+..+..+-|.|+.-.+.-++-|++.++++|..++.+-..+
T Consensus 202 QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~ 246 (268)
T 2yo3_A 202 QLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKI 246 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999999999999887766553
No 129
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.83 E-value=49 Score=23.04 Aligned_cols=45 Identities=24% Similarity=0.557 Sum_probs=27.1
Q ss_pred CCcee-eeCCCCC-CCceecCCCCCCCcceecccCC-------CCc----CCCCceeCCCCcc
Q 025765 191 EPTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVG-------LKE----QPKGKWYCPDCAA 240 (248)
Q Consensus 191 ~~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvg-------l~~----~p~~~w~C~~C~~ 240 (248)
....| .|+.+-+ +++|.-.+ .-||..|.. |.. ...+..||..|-.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 71 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQ-----QVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFN 71 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSS-----SEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHH
T ss_pred CCCcCccCCCccCCceeEEECC-----CEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHH
Confidence 35568 8988865 47775544 346877752 222 1256788876643
No 130
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.62 E-value=46 Score=22.23 Aligned_cols=45 Identities=29% Similarity=0.567 Sum_probs=28.8
Q ss_pred Ccee-eeCCCCC-CCceecCCCCCCCcceecccCC-------CCcC----CCCceeCC-CCccc
Q 025765 192 PTYC-VCNQVSY-GEMVACDNPNCKIEWFHFGCVG-------LKEQ----PKGKWYCP-DCAAL 241 (248)
Q Consensus 192 ~~~C-~C~~~~~-g~mi~Cd~~~C~~~WfH~~Cvg-------l~~~----p~~~w~C~-~C~~~ 241 (248)
...| .|+++-+ +++|.-.+ .-||..|.. |... ..+..||. .|-..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLG-----KDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETT-----EEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCcCCCCEeECCeEEEECC-----eEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 3567 8988866 77777655 446877752 3221 25788998 68644
No 131
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=23.98 E-value=43 Score=20.91 Aligned_cols=33 Identities=21% Similarity=0.583 Sum_probs=24.8
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKE 227 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~ 227 (248)
.+++| +|+..-+ +-+.|.. |. --.|-.|+....
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~--C~-~~~H~~C~~~v~ 46 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQT--CG-YKFHEHCSTKVP 46 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTT--TT-CCBCSTTSSSSS
T ss_pred CCcCCCCcccccc-cCCEeCC--CC-CeEChhHHhhCc
Confidence 37899 9988755 6678998 66 458999986543
No 132
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.60 E-value=27 Score=22.73 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=26.2
Q ss_pred cee-eeCCCCCCCceecCCCCCCCcceecccCC-------CCcC----CCCceeCCCCcc
Q 025765 193 TYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG-------LKEQ----PKGKWYCPDCAA 240 (248)
Q Consensus 193 ~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg-------l~~~----p~~~w~C~~C~~ 240 (248)
..| .|+.+-.+++|...+ .-||..|.. |... ..|..||..|-.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 60 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMG-----KQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN 60 (66)
T ss_dssp CEETTTTEECCSCEECCTT-----SBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHH
T ss_pred CCCcccCCEecceEEEECc-----cccccCcCEECCCCCCCCCCceEeECCcEECHHHHH
Confidence 457 888776677666555 335887752 2221 256788877754
No 133
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.56 E-value=2.1e+02 Score=20.57 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=54.5
Q ss_pred CChHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhCCCCCChh----hhhhHHHHHHHHHHHHHHHHHH
Q 025765 17 FPPLVRDAQMQC--FFVHTLAEIQRQNEQRCEQEI--EDLMREIRAGNITPNTS----LIRFSDDALDEQKHSIRIADEK 88 (248)
Q Consensus 17 ~lP~EL~r~~~~--elD~~~qel~~~~~~~~~~~l--~~~~k~~~~gs~~~~~k----~~~l~~~I~~~~~~~~~l~dEK 88 (248)
++|.+++..+.. .+-.+++.+...+.......- ......+. .+.++.+ .-.+ -|......+...-+++
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~--~l~~d~~vy~~iG~v--fv~~~~~ea~~~L~~~ 78 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE--SLPDDAVVYKTVGTL--IVKTTKDKAVAELKEK 78 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSCTTCCEEEEETTE--EEEECHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCcHhHHHhhHH--HhhccHHHHHHHHHHH
Confidence 678888888877 777777766666555544321 11111111 2222211 0000 0112334455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025765 89 VALAVQAYDLVDTHIQQLDQYLKNFDEELRR 119 (248)
Q Consensus 89 v~lA~~~~~lvd~hir~LD~dl~~~e~el~~ 119 (248)
+.-......-+++.+..|...+..+...|..
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777777777888888877777664
No 134
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=23.09 E-value=31 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.431 Sum_probs=28.2
Q ss_pred Ccee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 192 PTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 192 ~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
...| +|.......++. . |. .-|+..|+.--.. .+...||.|+..-
T Consensus 15 ~~~C~iC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL--P--CN-HTLCKPCFQSTVE-KASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSSCEEC--T--TS-CEECHHHHCCCCC-TTTSBCTTTCCBC
T ss_pred CCCCccCCcccCceeEc--C--CC-CHHhHHHHHHHHh-HCcCCCCCCCccc
Confidence 4668 998775443322 3 55 5688888752221 2458899998753
No 135
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.05 E-value=27 Score=22.03 Aligned_cols=13 Identities=38% Similarity=1.398 Sum_probs=9.9
Q ss_pred CCCceeCC--CCccc
Q 025765 229 PKGKWYCP--DCAAL 241 (248)
Q Consensus 229 p~~~w~C~--~C~~~ 241 (248)
..|+|+|+ .|..-
T Consensus 11 ~~GDW~C~~~~C~~~ 25 (45)
T 1n0z_A 11 SDGDWICPDKKCGNV 25 (45)
T ss_dssp CSSSCBCSSTTTCCB
T ss_pred CCCCcCCCCCCCCCE
Confidence 36899999 78544
No 136
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.36 E-value=2.3e+02 Score=21.73 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025765 75 LDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRR 119 (248)
Q Consensus 75 ~~~~~~~~~l~dEKv~lA~~~~~lvd~hir~LD~dl~~~e~el~~ 119 (248)
+..+..|.++-+.|+..+...++-+++-+..+...+..++..|..
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999999999999999999999999888887664
No 137
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.31 E-value=1.3e+02 Score=18.27 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 025765 68 IRFSDDALDEQKHSIRIADEKVALA 92 (248)
Q Consensus 68 ~~l~~~I~~~~~~~~~l~dEKv~lA 92 (248)
++...+|...-.+...|.+||-+|-
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888889988764
No 138
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.14 E-value=32 Score=22.54 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=26.4
Q ss_pred cee-eeCCCCCCCceecCCCCCCCcceecccCC-------CCc----CCCCceeCCCCccc
Q 025765 193 TYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG-------LKE----QPKGKWYCPDCAAL 241 (248)
Q Consensus 193 ~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg-------l~~----~p~~~w~C~~C~~~ 241 (248)
..| .|+++-.++.|.-.+ .-||..|.. |.. ...+..||..|-..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQD-----QPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp CCCSSSCCCCCTTCEEETT-----EEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred CCCcccCCEeCcceEEECc-----cccccCcCEECCCCCCCCCCccEeECCEEECHHHhHH
Confidence 456 888876666665554 346877652 322 12567888777543
No 139
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.04 E-value=43 Score=21.90 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=26.1
Q ss_pred cee-eeCCCCCCCceecCCCCCCCcceecccCC-------CCcC----CCCceeCCCCccc
Q 025765 193 TYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVG-------LKEQ----PKGKWYCPDCAAL 241 (248)
Q Consensus 193 ~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvg-------l~~~----p~~~w~C~~C~~~ 241 (248)
..| .|+++-.++.|.-.+ .-||..|.. |... ..+..||..|-..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYRE-----QPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp CBCSSSCCBCCSSEEESSS-----SEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CCCcccCCeeccceEEECc-----cccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 357 888876666665544 335877752 3221 2567888877543
No 140
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=21.84 E-value=1.9e+02 Score=19.59 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025765 76 DEQKHSIRIADEKVA-LA----VQAYDLVDTHIQQLDQYLKNFDEELRR 119 (248)
Q Consensus 76 ~~~~~~~~l~dEKv~-lA----~~~~~lvd~hir~LD~dl~~~e~el~~ 119 (248)
+.|..+-.+-|+||. +. +++-.--|..+++|+..|.+.+..+.+
T Consensus 4 ~TL~~AN~YTD~~v~n~t~~~l~~AN~YTD~KF~qL~nKi~k~~kr~~a 52 (64)
T 3lt7_A 4 HTLKTANSYTDVTVSNSTKKAIRESNQYTDHKFHQLENRLDKLEKRLLK 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 345667778888875 22 345566778899999999999987665
No 141
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=21.81 E-value=17 Score=27.09 Aligned_cols=36 Identities=22% Similarity=0.529 Sum_probs=19.7
Q ss_pred CCCCCcee-eeCCCCC-CC-----ceecCCC--CCCCcceecccCC
Q 025765 188 DPNEPTYC-VCNQVSY-GE-----MVACDNP--NCKIEWFHFGCVG 224 (248)
Q Consensus 188 ~~~~~~~C-~C~~~~~-g~-----mi~Cd~~--~C~~~WfH~~Cvg 224 (248)
.++...-| .|...-. |+ |+.-..- ..+ .|||+.|+.
T Consensus 21 AkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~-~W~H~~Cf~ 65 (106)
T 2dmj_A 21 AKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVP-HWYHFSCFW 65 (106)
T ss_dssp CCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEE-EEEETTHHH
T ss_pred eCCCCCcchhhCCccCCCCEEEEEEecCCCCCCCcC-EeECcCccc
Confidence 34455667 7876532 32 4432111 123 799999974
No 142
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=21.56 E-value=36 Score=21.04 Aligned_cols=33 Identities=27% Similarity=0.788 Sum_probs=24.8
Q ss_pred CCcee-eeCCCCCC---CceecCCCCCCCcceecccCCCC
Q 025765 191 EPTYC-VCNQVSYG---EMVACDNPNCKIEWFHFGCVGLK 226 (248)
Q Consensus 191 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~WfH~~Cvgl~ 226 (248)
.+++| +|+..-+| +-..|.. |. --.|-.|+...
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~--C~-~~~H~~C~~~v 46 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCED--CG-MNVHHKCREKV 46 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETT--TC-CEECHHHHTTS
T ss_pred CCCCcCCCCceeeccCCccCEeCC--CC-CeECHHHhhhc
Confidence 47889 99887665 5688998 76 45899997643
No 143
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.55 E-value=16 Score=24.13 Aligned_cols=44 Identities=18% Similarity=0.442 Sum_probs=26.7
Q ss_pred CCcee-eeCCCCCCCceecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 191 EPTYC-VCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 191 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
+...| +|...... ++ -. |. ..||..|+.--. .....||.|+..-
T Consensus 14 ~~~~C~IC~~~~~~-~~--~~--Cg-H~fc~~Ci~~~~--~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LI--LP--CA-HSFCQKCIDKWS--DRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCSSSCCSCCS-EE--ET--TT-EEECHHHHHHSS--CCCSSCHHHHHCT
T ss_pred CCCCCeeCCcCccC-cc--cC--CC-CcccHHHHHHHH--HCcCcCCCcCCcc
Confidence 35567 99876434 22 23 55 569999984111 1356799997654
No 144
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=21.37 E-value=15 Score=28.00 Aligned_cols=9 Identities=44% Similarity=1.357 Sum_probs=8.1
Q ss_pred cceecccCC
Q 025765 216 EWFHFGCVG 224 (248)
Q Consensus 216 ~WfH~~Cvg 224 (248)
.|||+.|+.
T Consensus 49 ~W~H~~Cf~ 57 (117)
T 1uw0_A 49 EWYHIKCMF 57 (117)
T ss_dssp CBCCHHHHH
T ss_pred eeECcccch
Confidence 899999984
No 145
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=21.31 E-value=3.9e+02 Score=22.90 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=21.6
Q ss_pred cCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 025765 16 FFPPLVRDAQMQCFFVHTLAEIQRQNEQRCEQEIEDL 52 (248)
Q Consensus 16 ~~lP~EL~r~~~~elD~~~qel~~~~~~~~~~~l~~~ 52 (248)
..||.+.|..|.+..+.................+..+
T Consensus 235 ~~L~~e~q~~i~~aa~~~~~~~~~~~~~~~~~~~~~l 271 (326)
T 3fxb_A 235 DGLSAEDQQLVQNAALAAYDHTVVYQQQAADTELAKI 271 (326)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999998444333333334444444445444
No 146
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.09 E-value=90 Score=20.97 Aligned_cols=45 Identities=24% Similarity=0.589 Sum_probs=26.4
Q ss_pred cee-eeCCCCC--CCceecCCCCCCCcceecccCC-------CCcC----CCCceeCCCCcccc
Q 025765 193 TYC-VCNQVSY--GEMVACDNPNCKIEWFHFGCVG-------LKEQ----PKGKWYCPDCAALK 242 (248)
Q Consensus 193 ~~C-~C~~~~~--g~mi~Cd~~~C~~~WfH~~Cvg-------l~~~----p~~~w~C~~C~~~~ 242 (248)
..| .|+++-. +.+|.-.+ .-||..|.. |... ..+..||..|-...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYED-----RHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSS-----CCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred CcCccCCCccccCcEEEEeCC-----ccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 356 7887755 44555444 225877752 3322 25678999887543
No 147
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=20.71 E-value=16 Score=27.81 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=8.1
Q ss_pred cceecccCC
Q 025765 216 EWFHFGCVG 224 (248)
Q Consensus 216 ~WfH~~Cvg 224 (248)
.|||+.|+.
T Consensus 52 ~W~H~~Cf~ 60 (114)
T 1v9x_A 52 MWNHASCIL 60 (114)
T ss_dssp EEEEHHHHH
T ss_pred eeECccccc
Confidence 899999984
No 148
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=20.60 E-value=19 Score=26.84 Aligned_cols=31 Identities=23% Similarity=0.724 Sum_probs=19.8
Q ss_pred CCceecCCCCCCCcceecccCCCC--cCCCCceeCCC
Q 025765 203 GEMVACDNPNCKIEWFHFGCVGLK--EQPKGKWYCPD 237 (248)
Q Consensus 203 g~mi~Cd~~~C~~~WfH~~Cvgl~--~~p~~~w~C~~ 237 (248)
...|+||. |. .|=.+. .++. ....++|||..
T Consensus 26 ~~WVQCD~--C~-KWRrLP-~~~~~~~~~pd~W~C~m 58 (100)
T 2l7p_A 26 SAWVRCDD--CF-KWRRIP-ASVVGSIDESSRWICMN 58 (100)
T ss_dssp SEEEECTT--TC-CEEEEC-HHHHTTSTTSSCCCGGG
T ss_pred CeEEeeCC--CC-ccccCC-hhHccccCCCCCceeCC
Confidence 45799998 77 996554 2111 11247899964
No 149
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=20.59 E-value=33 Score=24.74 Aligned_cols=47 Identities=28% Similarity=0.697 Sum_probs=28.9
Q ss_pred CCCCcee-eeCCC-CCCCceecCCCCCCCcceecccCC--CCc-CCCCceeCCC
Q 025765 189 PNEPTYC-VCNQV-SYGEMVACDNPNCKIEWFHFGCVG--LKE-QPKGKWYCPD 237 (248)
Q Consensus 189 ~~~~~~C-~C~~~-~~g~mi~Cd~~~C~~~WfH~~Cvg--l~~-~p~~~w~C~~ 237 (248)
++..+.| +|+.. .+...|+|-. -+..-|-|.|.. |.. -+.+.-|||.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPs--v~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPS--VPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSS--CSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCeeEeecchhhhccCceeeCCC--ccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 4557778 99876 4457899877 442334455543 222 2456899983
No 150
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=20.31 E-value=25 Score=22.35 Aligned_cols=27 Identities=37% Similarity=1.084 Sum_probs=18.3
Q ss_pred eecCCCCCCCcceecccCCCCcCCCCceeCCCCcccc
Q 025765 206 VACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 242 (248)
Q Consensus 206 i~Cd~~~C~~~WfH~~Cvgl~~~p~~~w~C~~C~~~~ 242 (248)
|-|.-++|| |. +.+...| +|..|...+
T Consensus 12 vkCeTPnCp---F~---mSVnTQP----~CHEC~err 38 (49)
T 2eqg_A 12 VKCETPNCP---FF---MSVNTQP----LCHECSERR 38 (49)
T ss_dssp SBCSSTTCC---SB---CCTTTTT----SCHHHHHHH
T ss_pred EeecCCCCC---eE---EEecCcc----chHHHHHHH
Confidence 789999999 43 3444444 788886543
No 151
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.23 E-value=7.4 Score=29.34 Aligned_cols=35 Identities=23% Similarity=0.578 Sum_probs=20.6
Q ss_pred cCCCCCCCcceecccCCCC--cCCCCceeCCCCcccccc
Q 025765 208 CDNPNCKIEWFHFGCVGLK--EQPKGKWYCPDCAALKNR 244 (248)
Q Consensus 208 Cd~~~C~~~WfH~~Cvgl~--~~p~~~w~C~~C~~~~~~ 244 (248)
||. |.+.-+...|+--. ..-...|||..|....+.
T Consensus 48 Cde--Cs~G~~~~rCIiCg~~~g~~dAYYC~eC~~lEKD 84 (109)
T 2k0a_A 48 CEN--CSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKD 84 (109)
T ss_dssp EHH--HHTSSTTSBCTTTSSSBCCEECEECHHHHHHTST
T ss_pred CCc--CCCCCcCCceEEcCCCCCcccceehHhhhhhhcc
Confidence 555 55555666676322 222357999999765443
No 152
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.05 E-value=5.5e+02 Score=24.09 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025765 76 DEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELR 118 (248)
Q Consensus 76 ~~~~~~~~l~dEKv~lA~~~~~lvd~hir~LD~dl~~~e~el~ 118 (248)
.+|.+=+.+-++||.---+-+.++..-|+.+=.+|++||.++.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444433334455555556666666666666643
Done!