BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025767
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLZ8|EDL2_ARATH EID1-like F-box protein 2 OS=Arabidopsis thaliana GN=EDL2 PE=2 SV=1
          Length = 249

 Score =  441 bits (1133), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 203/247 (82%), Positives = 224/247 (90%), Gaps = 1/247 (0%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MI+ KQYRC+HSA+C CTKGHLSE+V+FL+ QH+NWNP  IA LSC CKWFDDLAKR+LW
Sbjct: 1   MIIAKQYRCIHSATCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCR RAPKMM DLQSSGSHSVDG+WRALGKLLIYCSG  KGGLFN +QI GHFV++TR
Sbjct: 61  KEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISGHFVHRTR 120

Query: 121 FSRTSGKSFLLPQCRT-DVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRG 179
           FSRTSG+SFL PQCRT D+LYVSDPCEHLDQGE+GD+GFFRG+FKSF MSKVRK+LIK+G
Sbjct: 121 FSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKG 180

Query: 180 AQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLS 239
              HPTE CPYCKAKLWSMLQAKMIPQSASCRLGAYED IEYYVCLNGHMLG+C+LLPLS
Sbjct: 181 TPFHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPLS 240

Query: 240 DSEEVSE 246
           DSE  SE
Sbjct: 241 DSEGASE 247


>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis thaliana GN=EDL1 PE=2 SV=1
          Length = 293

 Score =  418 bits (1074), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/249 (77%), Positives = 215/249 (86%), Gaps = 1/249 (0%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MIL KQY C HS SCQCTKGHL+EDV+ LVFQH+NWNPK +A LSC C+WFDD AKRVLW
Sbjct: 1   MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNS-IQIPGHFVNKT 119
           KEFC+TRAPKMM+DLQSSGSH +DGNWRALGKLLIYCSGC +GGLFNS +QIPGHFV +T
Sbjct: 61  KEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRT 120

Query: 120 RFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRG 179
           RFSRT G+S L PQCRTDVLYV DPCEHLDQGEEGDVG FRG+FKSF  SKVRK++I + 
Sbjct: 121 RFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKA 180

Query: 180 AQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLS 239
              HP+E CPYCKAKLWSMLQAK+IPQSA  RL AYEDCIEY+VCLNGH+LGIC+L PLS
Sbjct: 181 VPFHPSEVCPYCKAKLWSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLS 240

Query: 240 DSEEVSEPE 248
           DSE+    E
Sbjct: 241 DSEDAIPSE 249


>sp|Q93ZT5|EDL3_ARATH EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1
          Length = 272

 Score =  201 bits (510), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 140/220 (63%), Gaps = 2/220 (0%)

Query: 23  SEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSG-SH 81
           +E V+ LVF+ ++W+  T+  ++   + F  +A+R+LW+  C  RAP M+  L     S 
Sbjct: 36  NERVLVLVFESISWDIHTLCTIASLSRRFCAIARRILWRRLCVNRAPGMVAALSGEDPSG 95

Query: 82  SVDGNWRALGKLLIYCSGCKKGGLFNSIQ-IPGHFVNKTRFSRTSGKSFLLPQCRTDVLY 140
            +DG W AL KL+ +C G +    FN  Q   GHF  ++RFS+TSG+ FL   CR D+LY
Sbjct: 96  RIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFACESRFSKTSGRFFLPKNCRRDLLY 155

Query: 141 VSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQ 200
           +SDPCEH   G +  +G FRGVF+ F  SK R+ L++R A L     CPYC  ++WSM  
Sbjct: 156 MSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVRRQAALEEKVRCPYCGGRVWSMTA 215

Query: 201 AKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           A+++P+SA+ RLG+ E  +E++VC+NGH+ G C L+PLS 
Sbjct: 216 ARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIPLSS 255


>sp|Q8LEA8|EID1_ARATH Phytochrome A-associated F-box protein OS=Arabidopsis thaliana
           GN=EID1 PE=1 SV=2
          Length = 336

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 121 FSRTSGKSFLLPQCRTDVLYVSD--PCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKR 178
            SR  G   L  + R D LY+ +   C H++  E+ +   FRGVFK F+ S+V + +   
Sbjct: 217 LSREQGNKLLASRFRGDCLYICNWPGCIHVE--EKRNYMLFRGVFKDFKRSRVWRTINDG 274

Query: 179 GAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPL 238
                    C +C       L +    +         E  +  YVC NGH+ G  + LPL
Sbjct: 275 NRSKTSGLKCAFCLCDETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPL 334



 Score = 40.0 bits (92), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 15/100 (15%)

Query: 22  LSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDL------ 75
           + EDV+F +F  +  +P+  A L+C C  F  + + V  K  C +  P ++ DL      
Sbjct: 9   IPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVISDLLPLPPS 68

Query: 76  ---------QSSGSHSVDGNWRALGKLLIYCSGCKKGGLF 106
                     +  S +  G W +L KL + C G    G+ 
Sbjct: 69  AAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGIL 108


>sp|Q15SY3|PUR5_PSEA6 Phosphoribosylformylglycinamidine cyclo-ligase OS=Pseudoalteromonas
           atlantica (strain T6c / ATCC BAA-1087) GN=purM PE=3 SV=1
          Length = 345

 Score = 32.0 bits (71), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 65  RTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRF 121
           R +A  +++ L SSG HS   N  +L + ++  SGC+   +F+   +  H +  TR 
Sbjct: 175 RVKAGNVLIALGSSGPHS---NGYSLVRKILEVSGCEASEVFDGKPLSEHLLEPTRI 228


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,333,827
Number of Sequences: 539616
Number of extensions: 3648323
Number of successful extensions: 7873
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7862
Number of HSP's gapped (non-prelim): 7
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)