BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025769
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4UJB1|HSPC4_RICFE Small heat shock protein C4 OS=Rickettsia felis (strain ATCC
           VR-1525 / URRWXCal2) GN=hspc4-1 PE=3 SV=1
          Length = 163

 Score = 43.1 bits (100), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQ 206
           DI E++  Y   V LPGV +D  D   D      +TI G     E++  K++  + M  +
Sbjct: 63  DITENESEYHLEVELPGVTQDNIDLKID---SNILTIDG---KKEQSTEKKDHNYHMKER 116

Query: 207 NLSPPGHFSISFKLPGPVNTEDFTGKFGTDGIL 239
                G FS S  LP  V+ E  T  F  DGIL
Sbjct: 117 YY---GSFSRSISLPSNVDEEHVTANFK-DGIL 145


>sp|Q4UKR8|HSPC2_RICFE Small heat shock protein C2 OS=Rickettsia felis (strain ATCC
           VR-1525 / URRWXCal2) GN=hspC2 PE=3 SV=1
          Length = 154

 Score = 35.8 bits (81), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 143 IGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFK 202
           I   DI+E+D  Y+  V LPG+  ++KD   +ID +  +TIKG      +   K   + +
Sbjct: 49  IPRTDISETDSGYSLEVELPGI--NQKDIDINID-NHILTIKGQKEEKSEEKNKNYHMRE 105

Query: 203 MLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245
                    G F  S  LP  +N +    +F  +GIL   + K
Sbjct: 106 RYY------GSFQRSISLPANINDDAINARF-ENGILHITIPK 141


>sp|Q9SSQ8|HS26M_ARATH 26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana
           GN=HSP26.5 PE=2 SV=1
          Length = 232

 Score = 35.4 bits (80), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 10/93 (10%)

Query: 148 IAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKG-VTTTGEKTVCKQNQVFKMLTQ 206
           + E DD Y  R  +PG+ +++   T +   DG +TIKG      EK   ++++ +   + 
Sbjct: 129 VKEQDDCYKLRYEVPGLTKEDVKITVN---DGILTIKGDHKAEEEKGSPEEDEYWSSKSY 185

Query: 207 NLSPPGHFSISFKLPGPVNTEDFTGKFGTDGIL 239
                G+++ S  LP     ED   +   +G+L
Sbjct: 186 -----GYYNTSLSLPDDAKVEDIKAEL-KNGVL 212


>sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana
           GN=ABCG40 PE=1 SV=1
          Length = 1423

 Score = 34.3 bits (77), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 134 AALGKVGTGIGAVDIAESDDSYAFRV--------ALPGVARDEKDFTCDIDPDGKVTIKG 185
           A +G+    IG + + E+  +YA R          L  +AR EK+     DPD  + +K 
Sbjct: 231 AYIGQNDVHIGEMTVRETF-AYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKA 289

Query: 186 VTTTGEKTVCKQNQVFKML 204
           ++T GEKT    + + K+L
Sbjct: 290 MSTAGEKTNVMTDYILKIL 308


>sp|Q6JAN0|GPR98_DANRE G-protein coupled receptor 98 OS=Danio rerio GN=gpr98 PE=2 SV=1
          Length = 6199

 Score = 32.0 bits (71), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 114  REELDNIIA-VTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPG---VARDEK 169
            REE   I++ +  TGV  TG+AAL   G     V +  SD+ +      P    V  DEK
Sbjct: 2766 REEYRVILSNIQTTGVTKTGIAALSAQGRE-AVVSVEASDEPFGLLSIAPSSLQVTTDEK 2824

Query: 170  DFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGH 213
            + T  I  + +    G      +TV    Q  +     L+ PG 
Sbjct: 2825 NTTIRIYINREFGASGAVNISYETVRGSLQDLRQTEGALAQPGQ 2868


>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis
           thaliana GN=ARID6 PE=2 SV=1
          Length = 398

 Score = 32.0 bits (71), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 108 LPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARD 167
           L  +  +  +D+++           V  +G V   +  +++ ES DS+     +PG+ R 
Sbjct: 277 LQKHKQQTSMDHVVTNEADKQLAAEVVDVGPVADWV-KINVKESKDSFEIFALVPGLLR- 334

Query: 168 EKDFTCDIDPDGKVTIKG 185
            K+     DP GKV I G
Sbjct: 335 -KEVRIQSDPAGKVVITG 351


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,677,003
Number of Sequences: 539616
Number of extensions: 4187312
Number of successful extensions: 10299
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 10293
Number of HSP's gapped (non-prelim): 122
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)