Query 025769
Match_columns 248
No_of_seqs 173 out of 1453
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 1.8E-25 4E-30 186.8 13.5 116 107-246 6-122 (142)
2 PRK10743 heat shock protein Ib 99.9 4.1E-25 8.9E-30 183.5 12.3 113 112-246 11-124 (137)
3 COG0071 IbpA Molecular chapero 99.9 2E-24 4.3E-29 179.3 13.8 98 141-248 38-135 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 3.3E-24 7.1E-29 164.8 11.3 91 145-245 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 7.9E-24 1.7E-28 162.3 11.0 93 144-245 1-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 3E-22 6.6E-27 154.0 12.0 89 144-245 1-90 (90)
7 cd06497 ACD_alphaA-crystallin_ 99.9 4.5E-21 9.8E-26 147.3 10.9 83 147-245 4-86 (86)
8 PF00011 HSP20: Hsp20/alpha cr 99.9 1.2E-20 2.7E-25 145.7 12.7 89 147-247 1-89 (102)
9 cd06498 ACD_alphaB-crystallin_ 99.8 1.8E-20 4E-25 143.4 10.5 82 148-246 2-84 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 3.6E-20 7.8E-25 141.1 10.7 83 147-245 1-83 (83)
11 cd06475 ACD_HspB1_like Alpha c 99.8 3.4E-20 7.4E-25 142.4 10.4 83 145-244 2-85 (86)
12 cd06479 ACD_HspB7_like Alpha c 99.8 3E-20 6.6E-25 141.8 9.1 80 147-245 2-81 (81)
13 cd06481 ACD_HspB9_like Alpha c 99.8 7.6E-20 1.7E-24 140.7 9.9 84 150-245 4-87 (87)
14 cd06476 ACD_HspB2_like Alpha c 99.8 1.1E-19 2.5E-24 138.9 10.5 80 149-245 3-83 (83)
15 cd06464 ACD_sHsps-like Alpha-c 99.8 3.1E-19 6.8E-24 132.2 10.5 88 147-245 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 1.4E-18 3.1E-23 134.4 9.6 81 151-244 6-86 (87)
17 cd06526 metazoan_ACD Alpha-cry 99.8 2.5E-18 5.3E-23 130.0 9.5 78 151-245 5-83 (83)
18 cd06477 ACD_HspB3_Like Alpha c 99.8 3E-18 6.4E-23 131.5 10.0 80 149-244 3-82 (83)
19 KOG0710 Molecular chaperone (s 99.6 2.4E-16 5.2E-21 137.7 6.4 102 140-248 81-182 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.6 1.5E-15 3.3E-20 118.6 9.6 82 148-245 10-91 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.4 6.1E-13 1.3E-17 94.2 8.9 80 148-245 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.3 6.2E-12 1.4E-16 108.5 10.4 88 144-247 63-150 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.2 1.7E-10 3.6E-15 85.0 8.5 70 148-247 1-70 (78)
24 cd06463 p23_like Proteins cont 98.9 6.6E-09 1.4E-13 75.5 9.0 76 148-248 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.8 3.2E-08 6.9E-13 85.9 9.8 78 142-247 90-169 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 9.7E-08 2.1E-12 70.9 7.8 76 147-247 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.3 2.1E-05 4.5E-10 56.8 11.0 77 144-245 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 97.9 0.00012 2.5E-09 57.7 10.4 78 144-247 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 97.8 0.00018 3.8E-09 54.1 8.1 76 147-247 1-76 (84)
30 PF08190 PIH1: pre-RNA process 97.6 0.00035 7.5E-09 64.0 9.1 65 152-244 260-327 (328)
31 cd06488 p23_melusin_like p23_l 97.5 0.0014 3E-08 50.0 10.2 79 145-248 2-80 (87)
32 cd06468 p23_CacyBP p23_like do 97.4 0.0022 4.8E-08 48.6 10.2 79 145-248 3-85 (92)
33 cd06467 p23_NUDC_like p23_like 97.4 0.0013 2.9E-08 48.8 8.6 75 146-248 1-77 (85)
34 cd06493 p23_NUDCD1_like p23_NU 97.1 0.006 1.3E-07 46.1 9.3 74 146-247 1-76 (85)
35 cd00237 p23 p23 binds heat sho 96.5 0.048 1E-06 43.6 10.6 77 144-247 2-78 (106)
36 cd06494 p23_NUDCD2_like p23-li 96.1 0.063 1.4E-06 42.0 9.2 76 143-247 5-82 (93)
37 PLN03088 SGT1, suppressor of 95.8 0.048 1E-06 51.4 8.6 79 144-247 157-235 (356)
38 cd06490 p23_NCB5OR p23_like do 95.3 0.3 6.5E-06 37.3 10.0 79 146-248 1-80 (87)
39 KOG1309 Suppressor of G2 allel 95.1 0.061 1.3E-06 47.5 6.3 79 144-247 4-82 (196)
40 cd06495 p23_NUDCD3_like p23-li 90.6 3.8 8.3E-05 32.6 9.7 80 143-247 4-86 (102)
41 cd06492 p23_mNUDC_like p23-lik 89.1 4 8.7E-05 31.2 8.6 72 148-247 3-78 (87)
42 PF13349 DUF4097: Domain of un 65.2 72 0.0016 25.8 9.7 82 144-242 66-147 (166)
43 cd06482 ACD_HspB10 Alpha cryst 61.1 17 0.00037 28.0 4.5 34 211-246 7-40 (87)
44 cd06471 ACD_LpsHSP_like Group 58.1 14 0.0003 27.8 3.5 31 152-185 61-91 (93)
45 cd06477 ACD_HspB3_Like Alpha c 57.3 20 0.00044 27.3 4.2 31 154-186 51-82 (83)
46 cd06526 metazoan_ACD Alpha-cry 52.2 27 0.00059 25.9 4.1 32 213-246 8-39 (83)
47 cd06478 ACD_HspB4-5-6 Alpha-cr 51.8 31 0.00068 25.9 4.5 32 212-245 7-38 (83)
48 cd06470 ACD_IbpA-B_like Alpha- 51.2 29 0.00063 26.3 4.2 33 212-246 11-43 (90)
49 cd06498 ACD_alphaB-crystallin_ 50.8 25 0.00055 26.6 3.8 32 154-187 51-83 (84)
50 cd06472 ACD_ScHsp26_like Alpha 48.8 24 0.00052 26.6 3.5 32 151-185 58-90 (92)
51 cd06476 ACD_HspB2_like Alpha c 48.3 32 0.0007 26.0 4.1 32 212-245 7-38 (83)
52 cd06497 ACD_alphaA-crystallin_ 47.6 35 0.00076 25.9 4.2 32 212-245 10-41 (86)
53 KOG1667 Zn2+-binding protein M 47.6 82 0.0018 29.8 7.2 80 145-248 216-295 (320)
54 cd06479 ACD_HspB7_like Alpha c 47.1 40 0.00087 25.5 4.4 33 212-246 8-40 (81)
55 cd06480 ACD_HspB8_like Alpha-c 45.3 44 0.00095 26.1 4.5 31 153-185 58-89 (91)
56 cd06464 ACD_sHsps-like Alpha-c 44.5 46 0.001 23.7 4.3 33 212-246 7-39 (88)
57 PF12992 DUF3876: Domain of un 44.3 58 0.0013 25.8 5.0 39 143-184 25-68 (95)
58 KOG3158 HSP90 co-chaperone p23 44.2 1.2E+02 0.0027 26.8 7.5 77 142-245 6-82 (180)
59 PRK10743 heat shock protein Ib 42.8 41 0.0009 28.0 4.2 31 213-245 46-76 (137)
60 PF00011 HSP20: Hsp20/alpha cr 41.7 64 0.0014 24.2 4.9 34 211-246 6-39 (102)
61 PF04972 BON: BON domain; Int 40.3 36 0.00078 23.5 3.1 26 162-190 12-37 (64)
62 PF01581 FARP: FMRFamide relat 37.2 15 0.00032 18.3 0.4 7 43-49 5-11 (11)
63 KOG3591 Alpha crystallins [Pos 35.0 30 0.00065 30.0 2.3 29 159-189 121-150 (173)
64 cd06475 ACD_HspB1_like Alpha c 33.3 88 0.0019 23.7 4.4 34 211-246 9-42 (86)
65 COG5091 SGT1 Suppressor of G2 32.3 26 0.00057 33.4 1.6 80 144-247 177-256 (368)
66 PF09972 DUF2207: Predicted me 32.0 4.5E+02 0.0097 24.9 11.0 93 145-246 71-176 (511)
67 cd06481 ACD_HspB9_like Alpha c 31.3 96 0.0021 23.5 4.3 33 212-246 7-39 (87)
68 PRK11597 heat shock chaperone 29.0 91 0.002 26.2 4.2 31 213-245 44-74 (142)
69 KOG3413 Mitochondrial matrix p 28.1 29 0.00063 30.0 1.0 24 220-244 65-88 (156)
70 COG0071 IbpA Molecular chapero 25.8 1.2E+02 0.0026 24.9 4.3 32 213-246 51-82 (146)
71 cd02178 GH16_beta_agarase Beta 25.6 1.8E+02 0.0038 26.1 5.7 48 171-222 60-109 (258)
72 PRK01433 hscA chaperone protei 25.1 2E+02 0.0044 29.4 6.6 44 145-188 412-466 (595)
73 PF08308 PEGA: PEGA domain; I 23.3 2.7E+02 0.0059 19.5 5.4 40 146-187 27-67 (71)
74 cd08023 GH16_laminarinase_like 23.2 2.8E+02 0.006 24.1 6.4 57 162-223 33-91 (235)
75 cd02180 GH16_fungal_KRE6_gluca 22.9 1.6E+02 0.0034 27.7 4.9 49 171-223 43-91 (295)
76 cd02175 GH16_lichenase lichena 21.5 2.1E+02 0.0045 24.8 5.2 43 177-222 37-79 (212)
77 cd06467 p23_NUDC_like p23_like 20.7 2.3E+02 0.0049 20.4 4.5 32 212-244 8-39 (85)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.93 E-value=1.8e-25 Score=186.84 Aligned_cols=116 Identities=18% Similarity=0.297 Sum_probs=95.9
Q ss_pred eecCCCChHHHHHHHHHhccCccccccccCCCCCCCcceeeEEE-cCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEE
Q 025769 107 FLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAE-SDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKG 185 (248)
Q Consensus 107 ~~p~~p~~~e~d~l~~~~~~~~~ltgsaa~g~~~~~~P~vDI~E-~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsG 185 (248)
+-||.+.+..++++++++...+ ...+.|++||+| ++++|+|.++|||++|+||+|++ ++|.|+|+|
T Consensus 6 ~~~~~~~~~~~d~l~~~~~~~~----------~~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v---~~~~LtI~g 72 (142)
T PRK11597 6 LSPLLRQWIGFDKLANALQNAG----------ESQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQL---EGTRLTVKG 72 (142)
T ss_pred cchhhcccccHHHHHHHhcccC----------ccCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEE---ECCEEEEEE
Confidence 3455555788888887654321 124569999998 57899999999999999999999 899999999
Q ss_pred EEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 186 VTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 186 er~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
+++. + .++.+|+++|++ +|+|+|+|.||.+||.+ +|+| +||||+|+|||.
T Consensus 73 e~~~--~--~~~~~~~~~Er~----~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~ 122 (142)
T PRK11597 73 TPEQ--P--EKEVKWLHQGLV----NQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRN 122 (142)
T ss_pred EEcc--c--cCCCcEEEEEEe----CcEEEEEEECCCCcccC--cCEE-cCCEEEEEEecc
Confidence 9764 1 346779887765 89999999999999998 6999 899999999996
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.92 E-value=4.1e-25 Score=183.47 Aligned_cols=113 Identities=15% Similarity=0.290 Sum_probs=92.3
Q ss_pred CChHHHHHHHHHhccCccccccccCCCCCCCcceeeEEE-cCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEecc
Q 025769 112 STREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAE-SDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTG 190 (248)
Q Consensus 112 p~~~e~d~l~~~~~~~~~ltgsaa~g~~~~~~P~vDI~E-~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~ 190 (248)
....+++++|+.+..++.. . ...+|++||.+ ++++|+|+++|||++|+||+|++ ++|.|+|+|+++..
T Consensus 11 ~~~~~~d~lf~~~~~~~~~-------~-~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v---~~~~LtI~ge~~~~ 79 (137)
T PRK10743 11 RSAIGFDRLFNLLENNQSQ-------S-NGGYPPYNVELVDENHYRIAIAVAGFAESELEITA---QDNLLVVKGAHADE 79 (137)
T ss_pred hcccCHHHHhhhhhhhhhc-------c-cCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEECcc
Confidence 3446788888776654321 1 12348999995 89999999999999999999999 88999999998652
Q ss_pred ceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 191 EKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 191 e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
.++.+|++.|++ +|+|+|+|.||.+||.++ |+| +||||+|+|||.
T Consensus 80 ----~~~~~~~~~Er~----~g~F~R~~~LP~~Vd~~~--A~~-~dGVL~I~lPK~ 124 (137)
T PRK10743 80 ----QKERTYLYQGIA----ERNFERKFQLAENIHVRG--ANL-VNGLLYIDLERV 124 (137)
T ss_pred ----ccCCcEEEEEEE----CCEEEEEEECCCCcccCc--CEE-eCCEEEEEEeCC
Confidence 245678887655 899999999999999994 999 899999999995
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2e-24 Score=179.31 Aligned_cols=98 Identities=29% Similarity=0.511 Sum_probs=87.9
Q ss_pred CCcceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEEC
Q 025769 141 TGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKL 220 (248)
Q Consensus 141 ~~~P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~L 220 (248)
.+.|+|||+|++++|.|.++|||++++||+|++ .++.|+|+|+++. +...+...|++.+++ +|.|+|+|.|
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~---~~~~l~I~g~~~~--~~~~~~~~~~~~e~~----~~~f~r~~~L 108 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITV---EGNTLTIRGEREE--EEEEEEEGYLRRERA----YGEFERTFRL 108 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEE---ECCEEEEEEEecc--cccccCCceEEEEEE----eeeEEEEEEC
Confidence 478999999999999999999999999999999 8999999999986 223556677776655 8999999999
Q ss_pred CCCcccCceEEEeCCCCEEEEEEeeecC
Q 025769 221 PGPVNTEDFTGKFGTDGILEGLVKKSVA 248 (248)
Q Consensus 221 P~~VD~e~I~A~fr~nGVLtItlPK~ea 248 (248)
|..||++.++|+| +||||+|+|||.++
T Consensus 109 p~~v~~~~~~A~~-~nGvL~I~lpk~~~ 135 (146)
T COG0071 109 PEKVDPEVIKAKY-KNGLLTVTLPKAEP 135 (146)
T ss_pred cccccccceeeEe-eCcEEEEEEecccc
Confidence 9999999999999 89999999999753
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.91 E-value=3.3e-24 Score=164.81 Aligned_cols=91 Identities=23% Similarity=0.427 Sum_probs=80.4
Q ss_pred eeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCC-CeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 145 AVDIAESDDSYAFRVALPGVARDEKDFTCDIDPD-GKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 145 ~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d-~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
++||+|++++|+|.++|||++|+||+|++ .+ +.|+|+|+++.+. ..++.+|++.|+. +|+|+|+|.||.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v---~~~~~L~I~g~~~~~~--~~~~~~~~~~e~~----~g~f~r~i~LP~~ 71 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEV---EDGRVLRISGERKKEE--EKKGDDWHRVERS----SGRFVRRFRLPEN 71 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEE---eCCCEEEEEEEecccc--cccCCCEEEEEEe----ccEEEEEEECCCC
Confidence 47999999999999999999999999988 54 5899999987532 3446778776554 8999999999999
Q ss_pred cccCceEEEeCCCCEEEEEEee
Q 025769 224 VNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtItlPK 245 (248)
||.++|+|.| +||||+|++||
T Consensus 72 v~~~~i~A~~-~nGvL~I~lPK 92 (92)
T cd06472 72 ADADEVKAFL-ENGVLTVTVPK 92 (92)
T ss_pred CCHHHCEEEE-ECCEEEEEecC
Confidence 9999999999 89999999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.91 E-value=7.9e-24 Score=162.32 Aligned_cols=93 Identities=29% Similarity=0.474 Sum_probs=81.0
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 144 GAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
|++||+|++++|+|.++|||++++||+|++ .++.|+|+|+++...+....+.+|++.|++ +|+|+|+|.|| +
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~---~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~----~g~f~r~~~lp-~ 72 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDY---KDGYLTISAKRDESKDEKDKKGNYIRRERY----YGSFSRSFYLP-N 72 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEccccccccccCCEEEEeee----ccEEEEEEECC-C
Confidence 468999999999999999999999999999 888999999998633222334578776554 89999999999 7
Q ss_pred cccCceEEEeCCCCEEEEEEee
Q 025769 224 VNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtItlPK 245 (248)
+|.++++|+| +||||+|++||
T Consensus 73 v~~~~i~A~~-~dGvL~I~lPK 93 (93)
T cd06471 73 VDEEEIKAKY-ENGVLKITLPK 93 (93)
T ss_pred CCHHHCEEEE-ECCEEEEEEcC
Confidence 9999999999 89999999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.88 E-value=3e-22 Score=154.04 Aligned_cols=89 Identities=17% Similarity=0.356 Sum_probs=78.7
Q ss_pred ceeeEEEcC-CeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCC
Q 025769 144 GAVDIAESD-DSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPG 222 (248)
Q Consensus 144 P~vDI~E~e-d~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~ 222 (248)
|++||+|++ ++|+|.++|||++|+||+|++ +++.|+|+|+++... ..+.+|+++|+. +|+|+|+|.||.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~---~~~~L~I~g~~~~~~---~~~~~~~~~e~~----~g~f~R~~~LP~ 70 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEV---ENNQLTVTGKKADEE---NEEREYLHRGIA----KRAFERSFNLAD 70 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcccc---cCCCcEEEEEEe----ceEEEEEEECCC
Confidence 689999975 999999999999999999999 889999999998633 256778776544 899999999999
Q ss_pred CcccCceEEEeCCCCEEEEEEee
Q 025769 223 PVNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 223 ~VD~e~I~A~fr~nGVLtItlPK 245 (248)
++|.+ +|+| +||||+|++|+
T Consensus 71 ~vd~~--~A~~-~~GvL~I~l~~ 90 (90)
T cd06470 71 HVKVK--GAEL-ENGLLTIDLER 90 (90)
T ss_pred CceEC--eeEE-eCCEEEEEEEC
Confidence 99985 8999 89999999986
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.85 E-value=4.5e-21 Score=147.26 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=72.9
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCccc
Q 025769 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNT 226 (248)
Q Consensus 147 DI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~ 226 (248)
+|.|++++|.|.++|||++++||+|++ .++.|+|+|++.. . .++..|++ .+|+|+|.||.+||+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~--~--~~~~~~~~---------~ef~R~~~LP~~Vd~ 67 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKV---LDDYVEIHGKHSE--R--QDDHGYIS---------REFHRRYRLPSNVDQ 67 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcc--e--eCCCCEEE---------EEEEEEEECCCCCCh
Confidence 799999999999999999999999999 8899999998753 1 23455644 359999999999999
Q ss_pred CceEEEeCCCCEEEEEEee
Q 025769 227 EDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 227 e~I~A~fr~nGVLtItlPK 245 (248)
++|+|+|.+||||+|++||
T Consensus 68 ~~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 68 SAITCSLSADGMLTFSGPK 86 (86)
T ss_pred HHeEEEeCCCCEEEEEecC
Confidence 9999998459999999998
No 8
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.85 E-value=1.2e-20 Score=145.74 Aligned_cols=89 Identities=25% Similarity=0.501 Sum_probs=73.6
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCccc
Q 025769 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNT 226 (248)
Q Consensus 147 DI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~ 226 (248)
||.|++++|.|.++|||++++||+|++ .++.|+|+|++.. ...+..++..+ ++++.|.|+|.||.++|.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~---~~~~L~I~g~~~~----~~~~~~~~~~~----~~~~~f~r~~~lP~~vd~ 69 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKV---DDNKLVISGKRKE----EEEDDRYYRSE----RRYGSFERSIRLPEDVDP 69 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEE---ETTEEEEEEEEEG----EECTTCEEEE-----S-SEEEEEEEE-STTB-G
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEE---ecCccceeceeee----eeeeeeeeecc----cccceEEEEEcCCCcCCc
Confidence 899999999999999999999999999 8889999999982 24455665644 449999999999999999
Q ss_pred CceEEEeCCCCEEEEEEeeec
Q 025769 227 EDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 227 e~I~A~fr~nGVLtItlPK~e 247 (248)
++++|+| +||+|+|++||..
T Consensus 70 ~~i~a~~-~~GvL~I~~pk~~ 89 (102)
T PF00011_consen 70 DKIKASY-ENGVLTITIPKKE 89 (102)
T ss_dssp GG-EEEE-TTSEEEEEEEBSS
T ss_pred ceEEEEe-cCCEEEEEEEccc
Confidence 9999999 8999999999975
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.84 E-value=1.8e-20 Score=143.44 Aligned_cols=82 Identities=13% Similarity=0.300 Sum_probs=71.6
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccC
Q 025769 148 IAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTE 227 (248)
Q Consensus 148 I~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e 227 (248)
+.+++++|.|.++|||++++||+|++ .++.|+|+|++.. + .++..|++ ++|+|+|.||.+||++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~--~--~~~~~~~~---------~eF~R~~~LP~~vd~~ 65 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKV---LGDFIEIHGKHEE--R--QDEHGFIS---------REFQRKYRIPADVDPL 65 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcc--e--eCCCCEEE---------EEEEEEEECCCCCChH
Confidence 56789999999999999999999999 8899999998754 2 23455643 4699999999999999
Q ss_pred ceEEEeCC-CCEEEEEEeee
Q 025769 228 DFTGKFGT-DGILEGLVKKS 246 (248)
Q Consensus 228 ~I~A~fr~-nGVLtItlPK~ 246 (248)
+|+|+| + ||||+|++||+
T Consensus 66 ~i~A~~-~~dGvL~I~lPk~ 84 (84)
T cd06498 66 TITSSL-SPDGVLTVCGPRK 84 (84)
T ss_pred HcEEEe-CCCCEEEEEEeCC
Confidence 999999 6 99999999995
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.83 E-value=3.6e-20 Score=141.13 Aligned_cols=83 Identities=16% Similarity=0.301 Sum_probs=71.5
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCccc
Q 025769 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNT 226 (248)
Q Consensus 147 DI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~ 226 (248)
.|.+++++|.|.+||||++++||+|++ .++.|+|+|++.. + .++..|++ .+|+|+|.||.+||.
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v---~~~~L~I~g~~~~--~--~~~~~~~~---------~ef~R~~~LP~~vd~ 64 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKV---LGDFVEIHGKHEE--R--QDEHGFIS---------REFHRRYRLPPGVDP 64 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEce--E--cCCCCEEE---------EEEEEEEECCCCcCh
Confidence 378899999999999999999999999 8899999998753 1 23445644 249999999999999
Q ss_pred CceEEEeCCCCEEEEEEee
Q 025769 227 EDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 227 e~I~A~fr~nGVLtItlPK 245 (248)
++|+|+|.+||||+|++||
T Consensus 65 ~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 65 AAITSSLSADGVLTISGPR 83 (83)
T ss_pred HHeEEEECCCCEEEEEecC
Confidence 9999999349999999998
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.83 E-value=3.4e-20 Score=142.37 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=72.3
Q ss_pred eeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCc
Q 025769 145 AVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPV 224 (248)
Q Consensus 145 ~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~V 224 (248)
.-||+|++++|.|.++|||++|+||+|++ .++.|+|+|+++.. .....|. .++|+|+|.||.+|
T Consensus 2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v---~~~~L~I~g~~~~~----~~~~~~~---------~~~f~R~f~LP~~v 65 (86)
T cd06475 2 MSEIRQTADRWKVSLDVNHFAPEELVVKT---KDGVVEITGKHEEK----QDEHGFV---------SRCFTRKYTLPPGV 65 (86)
T ss_pred cceEEEcCCeEEEEEECCCCCHHHEEEEE---ECCEEEEEEEECcC----cCCCCEE---------EEEEEEEEECCCCC
Confidence 35999999999999999999999999999 88899999998641 1223342 36899999999999
Q ss_pred ccCceEEEeCC-CCEEEEEEe
Q 025769 225 NTEDFTGKFGT-DGILEGLVK 244 (248)
Q Consensus 225 D~e~I~A~fr~-nGVLtItlP 244 (248)
|.++++|+| + ||||+|++|
T Consensus 66 d~~~v~A~~-~~dGvL~I~lP 85 (86)
T cd06475 66 DPTAVTSSL-SPDGILTVEAP 85 (86)
T ss_pred CHHHcEEEE-CCCCeEEEEec
Confidence 999999999 7 999999998
No 12
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.82 E-value=3e-20 Score=141.82 Aligned_cols=80 Identities=16% Similarity=0.362 Sum_probs=71.1
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCccc
Q 025769 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNT 226 (248)
Q Consensus 147 DI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~ 226 (248)
||.|++++|.|.+||||++|+||+|++ .+|.|+|+|+++... .. . +|+|+|+|.||.+||+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v---~~~~L~I~ger~~~~------~~------~----~g~F~R~~~LP~~vd~ 62 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTT---SNNQIEVHAEKLASD------GT------V----MNTFTHKCQLPEDVDP 62 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEeccC------CC------E----EEEEEEEEECCCCcCH
Confidence 789999999999999999999999999 889999999986411 11 1 6999999999999999
Q ss_pred CceEEEeCCCCEEEEEEee
Q 025769 227 EDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 227 e~I~A~fr~nGVLtItlPK 245 (248)
++|+|+|.+||||+|+++|
T Consensus 63 e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 63 TSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred HHeEEEecCCCEEEEEecC
Confidence 9999994279999999986
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.82 E-value=7.6e-20 Score=140.72 Aligned_cols=84 Identities=13% Similarity=0.251 Sum_probs=72.1
Q ss_pred EcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCce
Q 025769 150 ESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDF 229 (248)
Q Consensus 150 E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~I 229 (248)
+.+++|.|.++|||++++||+|++ .++.|+|+|+++..+ ......|++ + +|+|+|+|.||.+||.++|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v---~~~~L~I~g~~~~~~--~~~~~~~~~---~----~~~F~R~~~LP~~Vd~~~i 71 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRV---DGRKLVVTGKREKKN--EDEKGSFSY---E----YQEFVREAQLPEHVDPEAV 71 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEE---ECCEEEEEEEEeeec--ccCCCcEEE---E----eeEEEEEEECCCCcChHHe
Confidence 567899999999999999999999 899999999987532 233445543 2 7999999999999999999
Q ss_pred EEEeCCCCEEEEEEee
Q 025769 230 TGKFGTDGILEGLVKK 245 (248)
Q Consensus 230 ~A~fr~nGVLtItlPK 245 (248)
+|.|.+||||+|++|+
T Consensus 72 ~A~~~~dGvL~I~~P~ 87 (87)
T cd06481 72 TCSLSPSGHLHIRAPR 87 (87)
T ss_pred EEEeCCCceEEEEcCC
Confidence 9999569999999996
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.82 E-value=1.1e-19 Score=138.95 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=69.1
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCc
Q 025769 149 AESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTED 228 (248)
Q Consensus 149 ~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~ 228 (248)
.-++++|.|.++|||++++||+|++ .++.|+|+|++.. . .+...|+ .++|+|+|.||.+||+++
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~--~--~~~~~~~---------~~eF~R~~~LP~~vd~~~ 66 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVRT---VDNLLEVSARHPQ--R--MDRHGFV---------SREFTRTYILPMDVDPLL 66 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEEE---ECCEEEEEEEEcc--e--ecCCCEE---------EEEEEEEEECCCCCChhh
Confidence 4578899999999999999999999 8899999999853 2 2233353 357999999999999999
Q ss_pred eEEEeCC-CCEEEEEEee
Q 025769 229 FTGKFGT-DGILEGLVKK 245 (248)
Q Consensus 229 I~A~fr~-nGVLtItlPK 245 (248)
|+|+| + ||||+|++||
T Consensus 67 v~A~~-~~dGvL~I~~Pr 83 (83)
T cd06476 67 VRASL-SHDGILCIQAPR 83 (83)
T ss_pred EEEEe-cCCCEEEEEecC
Confidence 99999 6 9999999997
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.80 E-value=3.1e-19 Score=132.21 Aligned_cols=88 Identities=28% Similarity=0.524 Sum_probs=76.1
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCccc
Q 025769 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNT 226 (248)
Q Consensus 147 DI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~ 226 (248)
|+.|++++|++.++|||+++++|+|++ .++.|.|+|+++.... . ...+... ++.+|.|.|+|.||..+|.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v---~~~~l~I~g~~~~~~~--~-~~~~~~~----~~~~~~f~r~~~LP~~vd~ 70 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEV---EDGVLTISGEREEEEE--E-EENYLRR----ERSYGSFSRSFRLPEDVDP 70 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEecccc--c-CCcEEEE----EEeCcEEEEEEECCCCcCH
Confidence 688999999999999999999999999 8899999999986332 1 2244443 3448999999999999999
Q ss_pred CceEEEeCCCCEEEEEEee
Q 025769 227 EDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 227 e~I~A~fr~nGVLtItlPK 245 (248)
++++|.| +||+|+|++||
T Consensus 71 ~~i~a~~-~~G~L~I~~pk 88 (88)
T cd06464 71 DKIKASL-ENGVLTITLPK 88 (88)
T ss_pred HHcEEEE-eCCEEEEEEcC
Confidence 9999999 89999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.77 E-value=1.4e-18 Score=134.42 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=67.0
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCceE
Q 025769 151 SDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFT 230 (248)
Q Consensus 151 ~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~I~ 230 (248)
++++|+|.+||||++|+||+|++ .+|.|+|+|+++..++ .++. .++ ++|+|+|+|.||.+||.++|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v---~~~~L~I~ger~~~~e--~~~~----~er----~~g~F~R~f~LP~~Vd~d~i~ 72 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKV---KDGKVQVSAERENRYD--CLGS----KKY----SYMNICKEFSLPPGVDEKDVT 72 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEecccc--cCCc----cEE----EEEEEEEEEECCCCcChHHcE
Confidence 57899999999999999999999 8999999999976321 1111 122 389999999999999999999
Q ss_pred EEeCCCCEEEEEEe
Q 025769 231 GKFGTDGILEGLVK 244 (248)
Q Consensus 231 A~fr~nGVLtItlP 244 (248)
|+|..+|||+|.-|
T Consensus 73 A~~~~~~~l~i~~~ 86 (87)
T cd06482 73 YSYGLGSVVKIETP 86 (87)
T ss_pred EEEcCCCEEEEeeC
Confidence 99944449999876
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.77 E-value=2.5e-18 Score=130.01 Aligned_cols=78 Identities=19% Similarity=0.402 Sum_probs=67.3
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCceE
Q 025769 151 SDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFT 230 (248)
Q Consensus 151 ~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~I~ 230 (248)
++++|.|.++|||++++||+|++ .++.|+|+|+++... ....| + +|+|+|+|.||.+||+++++
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v---~~~~L~I~g~~~~~~----~~~~~-----~----~~~f~r~~~LP~~vd~~~i~ 68 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKV---SDNKLVVEGKHEERE----DEHGY-----V----SREFTRRYQLPEGVDPDSVT 68 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEE---ECCEEEEEEEEeeec----cCCCE-----E----EEEEEEEEECCCCCChHHeE
Confidence 34699999999999999999999 889999999987521 12222 1 58999999999999999999
Q ss_pred EEeCCC-CEEEEEEee
Q 025769 231 GKFGTD-GILEGLVKK 245 (248)
Q Consensus 231 A~fr~n-GVLtItlPK 245 (248)
|+| .| |||+|++||
T Consensus 69 A~~-~~~GvL~I~~Pk 83 (83)
T cd06526 69 SSL-SSDGVLTIEAPK 83 (83)
T ss_pred EEe-CCCcEEEEEecC
Confidence 999 77 999999998
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.77 E-value=3e-18 Score=131.49 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=68.3
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCc
Q 025769 149 AESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTED 228 (248)
Q Consensus 149 ~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~ 228 (248)
-|++++|.|.++|||++|+||+|++ .++.|+|+|+++... ++..|. .++|+|+|.||.+||.++
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v---~~~~L~I~ge~~~~~----~~~~~~---------~r~F~R~~~LP~~Vd~~~ 66 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQV---FEGWLLIKGQHGVRM----DEHGFI---------SRSFTRQYQLPDGVEHKD 66 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEE---ECCEEEEEEEEcccc----CCCCEE---------EEEEEEEEECCCCcchhe
Confidence 4788999999999999999999999 999999999987521 233442 258999999999999999
Q ss_pred eEEEeCCCCEEEEEEe
Q 025769 229 FTGKFGTDGILEGLVK 244 (248)
Q Consensus 229 I~A~fr~nGVLtItlP 244 (248)
|+|+|.+||||+|+.|
T Consensus 67 v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 67 LSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEcCCCEEEEEec
Confidence 9999626999999876
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.4e-16 Score=137.72 Aligned_cols=102 Identities=23% Similarity=0.398 Sum_probs=87.5
Q ss_pred CCCcceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEE
Q 025769 140 GTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFK 219 (248)
Q Consensus 140 ~~~~P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~ 219 (248)
..+.++.||.|.+++|++.+++||+.+++++|.+ +++++|+|+|+++.+.++......|+..|++ +|.|.|.+.
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~--~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~----~g~F~r~~~ 154 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEV--EDEKVLTISGERKKEEEESGSGKKWKRVERK----LGKFKRRFE 154 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEe--ccCcEEEEecccccccccccCCccceeehhc----ccceEeeec
Confidence 4566778999999999999999999999888887 3444899999999865444466778776655 899999999
Q ss_pred CCCCcccCceEEEeCCCCEEEEEEeeecC
Q 025769 220 LPGPVNTEDFTGKFGTDGILEGLVKKSVA 248 (248)
Q Consensus 220 LP~~VD~e~I~A~fr~nGVLtItlPK~ea 248 (248)
||++++.++|+|.| +||||+|++||.++
T Consensus 155 lPenv~~d~ikA~~-~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 155 LPENVDVDEIKAEM-ENGVLTVVVPKLEP 182 (196)
T ss_pred CCccccHHHHHHHh-hCCeEEEEEecccc
Confidence 99999999999999 99999999999753
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.63 E-value=1.5e-15 Score=118.56 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=70.3
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccC
Q 025769 148 IAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTE 227 (248)
Q Consensus 148 I~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e 227 (248)
+..+++.|.|.+|+.|++++||+|++ .++.|+|+|+++..+ . +..|+ .++|+|+|.||.+||++
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv---~~~~L~V~Gkh~~~~---~-e~g~~---------~r~F~R~~~LP~~Vd~~ 73 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKT---KDGFVEVSGKHEEQQ---K-EGGIV---------SKNFTKKIQLPPEVDPV 73 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEE---ECCEEEEEEEECccc---C-CCCEE---------EEEEEEEEECCCCCCch
Confidence 45688999999999999999999999 899999999987522 2 22342 37899999999999999
Q ss_pred ceEEEeCCCCEEEEEEee
Q 025769 228 DFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 228 ~I~A~fr~nGVLtItlPK 245 (248)
.|+|.+.+||+|+|++|.
T Consensus 74 ~v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 74 TVFASLSPEGLLIIEAPQ 91 (91)
T ss_pred hEEEEeCCCCeEEEEcCC
Confidence 999999559999999983
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.45 E-value=6.1e-13 Score=94.23 Aligned_cols=80 Identities=30% Similarity=0.463 Sum_probs=69.6
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccC
Q 025769 148 IAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTE 227 (248)
Q Consensus 148 I~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e 227 (248)
+++++++|.|++++||+.+++++|.+ .++.|.|+|....... . ++..+.|.+.+.||..+|++
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~---~~~~l~v~~~~~~~~~----------~----~~~~~~~~~~~~L~~~i~~~ 63 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEV---EDNVLTISGKREEEEE----------R----ERSYGEFERSFELPEDVDPE 63 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcCCCc----------c----eEeeeeEEEEEECCCCcCHH
Confidence 46889999999999999999999998 7789999998875221 1 11268999999999999999
Q ss_pred ceEEEeCCCCEEEEEEee
Q 025769 228 DFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 228 ~I~A~fr~nGVLtItlPK 245 (248)
+++|.+ .+|+|+|++||
T Consensus 64 ~~~~~~-~~~~l~i~l~K 80 (80)
T cd00298 64 KSKASL-ENGVLEITLPK 80 (80)
T ss_pred HCEEEE-ECCEEEEEEcC
Confidence 999999 79999999998
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.2e-12 Score=108.51 Aligned_cols=88 Identities=18% Similarity=0.322 Sum_probs=77.1
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 144 GAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
...++..+++.|.|.+|+..+++++|.|++ .|+.|.|+|+.... .++..|.. .+|.|.+.||.+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~---~~~~l~V~gkHeer----~d~~G~v~---------R~F~R~y~LP~~ 126 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKT---DDNTLEVEGKHEEK----EDEHGYVS---------RSFVRKYLLPED 126 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEe---CCCEEEEEeeeccc----cCCCCeEE---------EEEEEEecCCCC
Confidence 467889999999999999999999999999 88899999998752 23444532 579999999999
Q ss_pred cccCceEEEeCCCCEEEEEEeeec
Q 025769 224 VNTEDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtItlPK~e 247 (248)
||+++|++.+..||+|+|+.||.+
T Consensus 127 vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 127 VDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred CChhheEEeeCCCceEEEEccCCC
Confidence 999999999999999999999975
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.17 E-value=1.7e-10 Score=85.00 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=61.8
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccC
Q 025769 148 IAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTE 227 (248)
Q Consensus 148 I~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e 227 (248)
++++++.+.|.+++||+++++++|++ +++.|.|+| . .|.+.+.||..||++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~---~~~~l~i~~---~-----------------------~~~~~~~l~~~I~~e 51 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFC---SDLYLKVNF---P-----------------------PYLFELDLAAPIDDE 51 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEE---ecCEEEEcC---C-----------------------CEEEEEeCccccccc
Confidence 46889999999999999999999988 777888866 0 155679999999999
Q ss_pred ceEEEeCCCCEEEEEEeeec
Q 025769 228 DFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 228 ~I~A~fr~nGVLtItlPK~e 247 (248)
+.+|++ ++|.|+|+|+|.+
T Consensus 52 ~~~~~~-~~~~l~i~L~K~~ 70 (78)
T cd06469 52 KSSAKI-GNGVLVFTLVKKE 70 (78)
T ss_pred ccEEEE-eCCEEEEEEEeCC
Confidence 999999 8999999999986
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.94 E-value=6.6e-09 Score=75.53 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=65.3
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccC
Q 025769 148 IAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTE 227 (248)
Q Consensus 148 I~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e 227 (248)
+.++++.+.|.+.+||+.+++++|.+ .++.|+|++.... .+.|...+.|+..||++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~---~~~~l~i~~~~~~---------------------~~~~~~~~~L~~~I~~~ 56 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEF---TPKSLTVSVKGGG---------------------GKEYLLEGELFGPIDPE 56 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEE---ecCEEEEEeeCCC---------------------CCceEEeeEccCccchh
Confidence 36789999999999999999999998 7789999976431 23466778999999999
Q ss_pred ceEEEeCCCCEEEEEEeeecC
Q 025769 228 DFTGKFGTDGILEGLVKKSVA 248 (248)
Q Consensus 228 ~I~A~fr~nGVLtItlPK~ea 248 (248)
+.++++ ++|.|+|+|+|.++
T Consensus 57 ~s~~~~-~~~~l~i~L~K~~~ 76 (84)
T cd06463 57 ESKWTV-EDRKIEITLKKKEP 76 (84)
T ss_pred hcEEEE-eCCEEEEEEEECCC
Confidence 999999 89999999999863
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.80 E-value=3.2e-08 Score=85.94 Aligned_cols=78 Identities=32% Similarity=0.454 Sum_probs=59.6
Q ss_pred CcceeeEEEcCC-eEEEEEEcCCCCCCC-eEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEE
Q 025769 142 GIGAVDIAESDD-SYAFRVALPGVARDE-KDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFK 219 (248)
Q Consensus 142 ~~P~vDI~E~ed-~yvI~vdLPGV~keD-IeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~ 219 (248)
..+.+|+.+.++ +++|.+|||||.+++ |+|.++- +.+.|+|+. . +.+.+.+.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~--~-----------------------~~~~krv~ 143 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRV--G-----------------------EKYLKRVA 143 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEec--C-----------------------CceEeeEe
Confidence 356789999888 699999999999888 8888832 244666631 1 11233589
Q ss_pred CCCCcccCceEEEeCCCCEEEEEEeeec
Q 025769 220 LPGPVNTEDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 220 LP~~VD~e~I~A~fr~nGVLtItlPK~e 247 (248)
||.. +++.++|+| .||||+|+|-|.+
T Consensus 144 L~~~-~~e~~~~t~-nNgILEIri~~~~ 169 (177)
T PF05455_consen 144 LPWP-DPEITSATF-NNGILEIRIRRTE 169 (177)
T ss_pred cCCC-ccceeeEEE-eCceEEEEEeecC
Confidence 9977 789999999 8999999998864
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.68 E-value=9.7e-08 Score=70.86 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=65.3
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCccc
Q 025769 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNT 226 (248)
Q Consensus 147 DI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~ 226 (248)
|++++++.+.|.+.+||+.++++.|.+ +.+.|.|++.... .+.|...+.|...|++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~---~~~~l~i~~~~~~---------------------~~~~~~~~~L~~~I~~ 56 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEF---NEQSLSVSIILPG---------------------GSEYQLELDLFGPIDP 56 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---ecCEEEEEEECCC---------------------CCeEEEecccccccCc
Confidence 688999999999999999999999998 7778999865320 1345667899999999
Q ss_pred CceEEEeCCCCEEEEEEeeec
Q 025769 227 EDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 227 e~I~A~fr~nGVLtItlPK~e 247 (248)
++.++++ .+|.|+|+|.|.+
T Consensus 57 ~~s~~~~-~~~~vei~L~K~~ 76 (84)
T cd06466 57 EQSKVSV-LPTKVEITLKKAE 76 (84)
T ss_pred hhcEEEE-eCeEEEEEEEcCC
Confidence 9999999 8999999999976
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.26 E-value=2.1e-05 Score=56.76 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=62.0
Q ss_pred ceeeEEEcCCeEEEEEEcCCCC--CCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECC
Q 025769 144 GAVDIAESDDSYAFRVALPGVA--RDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLP 221 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~--keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP 221 (248)
|.++++++++...|.+.+++.. ++|++|.+ .+..|.|+..... +. .|...+.|.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~---~~~~l~v~~~~~~-------~~--------------~~~~~~~L~ 56 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDF---TDTSLSVSIKSGD-------GK--------------EYLLEGELF 56 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEE---ETTEEEEEEEETT-------SC--------------EEEEEEEBS
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEE---EeeEEEEEEEccC-------Cc--------------eEEEEEEEe
Confidence 6789999999999999996664 99998888 7789999855432 11 244467899
Q ss_pred CCcccCceEEEeCCCCEEEEEEee
Q 025769 222 GPVNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 222 ~~VD~e~I~A~fr~nGVLtItlPK 245 (248)
..|++++.+.++ .++-|+|+|.|
T Consensus 57 ~~I~~~~s~~~~-~~~~i~i~L~K 79 (79)
T PF04969_consen 57 GEIDPDESTWKV-KDNKIEITLKK 79 (79)
T ss_dssp S-BECCCEEEEE-ETTEEEEEEEB
T ss_pred eeEcchhcEEEE-ECCEEEEEEEC
Confidence 999999999999 79999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.95 E-value=0.00012 Score=57.71 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=64.4
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 144 GAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
|+++++++++...|.+.+||+ ++++|.+ +...|.|++.... .+. .|...+.|...
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~---~~~~l~v~~~~~~------~~~--------------~y~~~~~L~~~ 55 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKL---EPTSLSFKAKGGG------GGK--------------KYEFDLEFYKE 55 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEE---ECCEEEEEEEcCC------CCe--------------eEEEEeEhhhh
Confidence 578999999999999999999 7678877 7779999885321 112 24446799999
Q ss_pred cccCceEEEeCCCCEEEEEEeeec
Q 025769 224 VNTEDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtItlPK~e 247 (248)
|++++.+.++ .++.|+|+|.|.+
T Consensus 56 I~pe~s~~~v-~~~kveI~L~K~~ 78 (108)
T cd06465 56 IDPEESKYKV-TGRQIEFVLRKKE 78 (108)
T ss_pred ccccccEEEe-cCCeEEEEEEECC
Confidence 9999999999 7999999999986
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.76 E-value=0.00018 Score=54.07 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=63.1
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCccc
Q 025769 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNT 226 (248)
Q Consensus 147 DI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~ 226 (248)
|++++++...|.+.++|+.++++.|.+ +++.|.+++.... +.. |.-.+.|...|++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~---~~~~l~~~~~~~~-------~~~--------------y~~~~~L~~~I~p 56 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEF---EKRELSATVKLPS-------GND--------------YSLKLHLLHPIVP 56 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---eCCEEEEEEECCC-------CCc--------------EEEeeecCceecc
Confidence 688999999999999999999999988 7789999875421 112 3345789999999
Q ss_pred CceEEEeCCCCEEEEEEeeec
Q 025769 227 EDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 227 e~I~A~fr~nGVLtItlPK~e 247 (248)
++.+.+. ..+-++|+|.|.+
T Consensus 57 ~~s~~~v-~~~kiei~L~K~~ 76 (84)
T cd06489 57 EQSSYKI-LSTKIEIKLKKTE 76 (84)
T ss_pred hhcEEEE-eCcEEEEEEEcCC
Confidence 9999998 6888999999975
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.59 E-value=0.00035 Score=63.97 Aligned_cols=65 Identities=18% Similarity=0.422 Sum_probs=53.2
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCceE
Q 025769 152 DDSYAFRVALPGV-ARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFT 230 (248)
Q Consensus 152 ed~yvI~vdLPGV-~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~I~ 230 (248)
.+.++|+++|||+ +..+|++.| .+..|.|+.... .| .-.+.||..||.+..+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV---~~~~l~l~~~~~----------~y--------------~L~l~LP~~V~~~~~~ 312 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDV---SEDRLSLSSPKP----------KY--------------RLDLPLPYPVDEDNGK 312 (328)
T ss_pred CceEEEEEECCCcCccceeEEEE---eCCEEEEEeCCC----------ce--------------EEEccCCCcccCCCce
Confidence 5899999999999 688888888 777888864321 23 3359999999999999
Q ss_pred EEeCCC--CEEEEEEe
Q 025769 231 GKFGTD--GILEGLVK 244 (248)
Q Consensus 231 A~fr~n--GVLtItlP 244 (248)
|+| .. ++|+|+||
T Consensus 313 Akf-~~~~~~L~vtlp 327 (328)
T PF08190_consen 313 AKF-DKKTKTLTVTLP 327 (328)
T ss_pred EEE-ccCCCEEEEEEE
Confidence 999 44 79999998
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.53 E-value=0.0014 Score=49.97 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred eeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCc
Q 025769 145 AVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPV 224 (248)
Q Consensus 145 ~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~V 224 (248)
++|++++++...|.+-+.|++++++.+.+ +...|+++..-.. +. .|.-.+.|-.+|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~---~~~~l~v~~~~~~-------~~--------------~y~~~l~L~~~I 57 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEA---NSTVLTIHIVFEG-------NK--------------EFQLDIELWGVI 57 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEe---cCCEEEEEEECCC-------Cc--------------eEEEEeeccceE
Confidence 47999999999999999999999988887 6678888654321 11 244567899999
Q ss_pred ccCceEEEeCCCCEEEEEEeeecC
Q 025769 225 NTEDFTGKFGTDGILEGLVKKSVA 248 (248)
Q Consensus 225 D~e~I~A~fr~nGVLtItlPK~ea 248 (248)
++++.+-+. ...-++|+|.|+++
T Consensus 58 ~~~~s~~~v-~~~kvei~L~K~~~ 80 (87)
T cd06488 58 DVEKSSVNM-LPTKVEIKLRKAEP 80 (87)
T ss_pred ChhHcEEEe-cCcEEEEEEEeCCC
Confidence 999998888 79999999999863
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.43 E-value=0.0022 Score=48.61 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=62.9
Q ss_pred eeeEEEcCCeEEEEEEcCCCCC---CCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEE-EC
Q 025769 145 AVDIAESDDSYAFRVALPGVAR---DEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISF-KL 220 (248)
Q Consensus 145 ~vDI~E~ed~yvI~vdLPGV~k---eDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~-~L 220 (248)
.++++++++...|.+.+|++.+ ++++|++ ..+.|.|++.... +..| .-.+ +|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~---~~~~l~v~~~~~~-------~~~~--------------~~~~~~L 58 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEF---TERSFELKVHDLN-------GKNY--------------RFTINRL 58 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEe---cCCEEEEEEECCC-------CcEE--------------EEEehHh
Confidence 5789999999999999999987 8888887 7779999874211 1222 2234 48
Q ss_pred CCCcccCceEEEeCCCCEEEEEEeeecC
Q 025769 221 PGPVNTEDFTGKFGTDGILEGLVKKSVA 248 (248)
Q Consensus 221 P~~VD~e~I~A~fr~nGVLtItlPK~ea 248 (248)
-..|++++.+.+. ..+-++|+|.|.+.
T Consensus 59 ~~~I~~e~s~~~~-~~~ki~i~L~K~~~ 85 (92)
T cd06468 59 LKKIDPEKSSFKV-KTDRIVITLAKKKE 85 (92)
T ss_pred hCccCccccEEEE-eCCEEEEEEEeCCC
Confidence 8999999999999 78999999999863
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.41 E-value=0.0013 Score=48.81 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=59.7
Q ss_pred eeEEEcCCeEEEEEEcC-CCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCc
Q 025769 146 VDIAESDDSYAFRVALP-GVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPV 224 (248)
Q Consensus 146 vDI~E~ed~yvI~vdLP-GV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~V 224 (248)
+++.++++...|.+.+| +++++|+++++ ....|.|+... ..++. ...|...|
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~---~~~~l~v~~~~----------~~~~l--------------~~~L~~~I 53 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEI---TPKHLKVGVKG----------GEPLL--------------DGELYAKV 53 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEE---EcCEEEEEECC----------CCceE--------------cCcccCce
Confidence 46889999999999997 78999999988 77789887531 11111 13588899
Q ss_pred ccCceEEEeCCC-CEEEEEEeeecC
Q 025769 225 NTEDFTGKFGTD-GILEGLVKKSVA 248 (248)
Q Consensus 225 D~e~I~A~fr~n-GVLtItlPK~ea 248 (248)
|+++.+-++ ++ ..|+|+|+|+++
T Consensus 54 ~~~~s~w~~-~~~~~v~i~L~K~~~ 77 (85)
T cd06467 54 KVDESTWTL-EDGKLLEITLEKRNE 77 (85)
T ss_pred eEcCCEEEE-eCCCEEEEEEEECCC
Confidence 999998899 78 899999999863
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.09 E-value=0.006 Score=46.13 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=58.1
Q ss_pred eeEEEcCCeEEEEEEcC-CCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCc
Q 025769 146 VDIAESDDSYAFRVALP-GVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPV 224 (248)
Q Consensus 146 vDI~E~ed~yvI~vdLP-GV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~V 224 (248)
++++++++...|.+.+| |++++|++|++ +.+.|.|+.. . . ..+ ..-.|...|
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~---~~~~l~v~~~--~-~------~~~---------------~~g~L~~~I 53 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKF---LPDHISIALK--D-Q------APL---------------LEGKLYSSI 53 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEE---ecCEEEEEeC--C-C------CeE---------------EeCcccCcc
Confidence 47899999999999996 99999999988 7778888642 1 0 111 123788999
Q ss_pred ccCceEEEeCCCC-EEEEEEeeec
Q 025769 225 NTEDFTGKFGTDG-ILEGLVKKSV 247 (248)
Q Consensus 225 D~e~I~A~fr~nG-VLtItlPK~e 247 (248)
+++.-+=+. ++| .|+|+|.|++
T Consensus 54 ~~d~Stw~i-~~~~~l~i~L~K~~ 76 (85)
T cd06493 54 DHESSTWII-KENKSLEVSLIKKD 76 (85)
T ss_pred cccCcEEEE-eCCCEEEEEEEECC
Confidence 999888777 577 7999999986
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.48 E-value=0.048 Score=43.59 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=58.7
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 144 GAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
|.+++++..+...|.+++|+ .+|++|++ +...|+++|... ++..|+ -.+.|=..
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l---~~~~l~f~~~~~-------~g~~y~--------------~~l~l~~~ 55 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDF---EKSKLTFSCLNG-------DNVKIY--------------NEIELYDR 55 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEE---ecCEEEEEEECC-------CCcEEE--------------EEEEeecc
Confidence 67999999999999999999 46777777 667999998321 122232 24778889
Q ss_pred cccCceEEEeCCCCEEEEEEeeec
Q 025769 224 VNTEDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtItlPK~e 247 (248)
|++++-+-+. ..--+++.|.|.+
T Consensus 56 I~pe~Sk~~v-~~r~ve~~L~K~~ 78 (106)
T cd00237 56 VDPNDSKHKR-TDRSILCCLRKGK 78 (106)
T ss_pred cCcccCeEEe-CCceEEEEEEeCC
Confidence 9999877777 4666888999975
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.11 E-value=0.063 Score=42.00 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=59.7
Q ss_pred cceeeEEEcCCeEEEEEEcC-CCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECC
Q 025769 143 IGAVDIAESDDSYAFRVALP-GVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLP 221 (248)
Q Consensus 143 ~P~vDI~E~ed~yvI~vdLP-GV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP 221 (248)
.+.+++.++.+...|.+.+| |+++.|+.|++ ..+.|.|.-. + ..+ . .| .|.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i---~~~~l~V~~~---g-------~~~-l--------~G------~L~ 56 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKL---GSRDISLAVK---G-------QEV-L--------KG------KLF 56 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEE---EcCEEEEEEC---C-------EEE-E--------cC------ccc
Confidence 46789999999999999888 89999999988 7778888641 1 012 1 13 578
Q ss_pred CCcccCceEEEeCCCC-EEEEEEeeec
Q 025769 222 GPVNTEDFTGKFGTDG-ILEGLVKKSV 247 (248)
Q Consensus 222 ~~VD~e~I~A~fr~nG-VLtItlPK~e 247 (248)
..|+++.-.=++ ++| +|+|+|.|.+
T Consensus 57 ~~I~~destWtl-ed~k~l~I~L~K~~ 82 (93)
T cd06494 57 DSVVADECTWTL-EDRKLIRIVLTKSN 82 (93)
T ss_pred CccCcccCEEEE-ECCcEEEEEEEeCC
Confidence 889999888889 676 5899999974
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.78 E-value=0.048 Score=51.42 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=64.1
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 144 GAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
+++|++++++...|.+-+.|+.++++.|.+ ..+.|.|+-.... +.. |.-.+.|-..
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~---~~~~l~v~~~~~~-------~~~--------------y~~~~~L~~~ 212 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDF---GEQILSVVIEVPG-------EDA--------------YHLQPRLFGK 212 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEe---ecCEEEEEEecCC-------Ccc--------------eeeccccccc
Confidence 579999999999999999999999998888 7778888864321 111 3334789999
Q ss_pred cccCceEEEeCCCCEEEEEEeeec
Q 025769 224 VNTEDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtItlPK~e 247 (248)
|++++.+.+. ..--++|+|.|.+
T Consensus 213 I~p~~s~~~v-~~~Kiei~l~K~~ 235 (356)
T PLN03088 213 IIPDKCKYEV-LSTKIEIRLAKAE 235 (356)
T ss_pred ccccccEEEE-ecceEEEEEecCC
Confidence 9999988888 5778999999875
No 38
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.30 E-value=0.3 Score=37.32 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=53.0
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcc
Q 025769 146 VDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVN 225 (248)
Q Consensus 146 vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD 225 (248)
+|+++++++..|.+-..+....+..+.++. ..+.|.|+-.-. + -.|...+.|-..|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~-~~~~l~v~~~~~--------~--------------~~~~~~~~L~~~I~ 57 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDD-QQRELRVEIILG--------D--------------KSYLLHLDLSNEVQ 57 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEEC-CCCEEEEEEECC--------C--------------ceEEEeeeccccCC
Confidence 489999999999999986544444444322 445777754321 1 11445578889998
Q ss_pred cCceEEEeC-CCCEEEEEEeeecC
Q 025769 226 TEDFTGKFG-TDGILEGLVKKSVA 248 (248)
Q Consensus 226 ~e~I~A~fr-~nGVLtItlPK~ea 248 (248)
++. +.++. .-|-++|+|.|+++
T Consensus 58 ~~~-~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 58 WPC-EVRISTETGKIELVLKKKEP 80 (87)
T ss_pred CCc-EEEEcccCceEEEEEEcCCC
Confidence 875 55551 26799999999864
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=95.09 E-value=0.061 Score=47.53 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=59.5
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 144 GAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
+++|++++++..+|.+-+++|.++|+.|.+ .++.|.|..+-.. +..| .-...|-.+
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~---s~~~l~~~~~~~~-------g~~~--------------~l~~~L~~~ 59 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEI---SENTLSIVIQLPS-------GSEY--------------NLQLKLYHE 59 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEe---ecceEEEEEecCC-------chhh--------------hhhHHhccc
Confidence 578999999999999999999999998888 7778877654432 1122 223457778
Q ss_pred cccCceEEEeCCCCEEEEEEeeec
Q 025769 224 VNTEDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtItlPK~e 247 (248)
|.+++.+-+. ----++|+|+|.+
T Consensus 60 I~pe~~s~k~-~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 60 IIPEKSSFKV-FSTKVEITLAKAE 82 (196)
T ss_pred ccccceeeEe-eeeeEEEEecccc
Confidence 8888777666 3566889988854
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=90.60 E-value=3.8 Score=32.61 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=57.4
Q ss_pred cceeeEEEcCCeEEEEEEcC-CC-CCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEEC
Q 025769 143 IGAVDIAESDDSYAFRVALP-GV-ARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKL 220 (248)
Q Consensus 143 ~P~vDI~E~ed~yvI~vdLP-GV-~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~L 220 (248)
...|-+..+.++..|.+.|| |. +..|+.|++ ....|.|.-....+ +..++. | .|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i---~~~~l~v~~~~~~~------~~~~i~---------G------~L 59 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDL---QSSSIRVSVRDGGG------EKVLME---------G------EF 59 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEE---EcCEEEEEEecCCC------CceEEe---------C------cc
Confidence 45688999999999999999 54 578788777 66688876532110 011211 3 57
Q ss_pred CCCcccCceEEEeCCCC-EEEEEEeeec
Q 025769 221 PGPVNTEDFTGKFGTDG-ILEGLVKKSV 247 (248)
Q Consensus 221 P~~VD~e~I~A~fr~nG-VLtItlPK~e 247 (248)
...|+.+.-.=++ +|| .|.|+|-|..
T Consensus 60 ~~~V~~des~Wtl-ed~~~l~I~L~K~~ 86 (102)
T cd06495 60 THKINTENSLWSL-EPGKCVLLSLSKCS 86 (102)
T ss_pred cCcccCccceEEE-eCCCEEEEEEEECC
Confidence 8889998888889 786 5899999864
No 41
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=89.11 E-value=4 Score=31.20 Aligned_cols=72 Identities=10% Similarity=0.054 Sum_probs=51.8
Q ss_pred EEEcCCeEEEEEEcC---CCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCc
Q 025769 148 IAESDDSYAFRVALP---GVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPV 224 (248)
Q Consensus 148 I~E~ed~yvI~vdLP---GV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~V 224 (248)
+.++.++..|.+.+| |+++.|++|++ ....|.|.-. +...+. .=.|...|
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i---~~~~l~v~~~----------g~~~~i--------------~G~L~~~V 55 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDI---QRKHLKVGLK----------GQPPII--------------DGELYNEV 55 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEE---ecCEEEEEEC----------CCceEE--------------eCcccCcc
Confidence 456788899999996 37888888877 6667877431 111111 12577889
Q ss_pred ccCceEEEeCCCC-EEEEEEeeec
Q 025769 225 NTEDFTGKFGTDG-ILEGLVKKSV 247 (248)
Q Consensus 225 D~e~I~A~fr~nG-VLtItlPK~e 247 (248)
+++.-.=.+ ++| .|.|+|-|.+
T Consensus 56 ~~des~Wtl-ed~~~l~i~L~K~~ 78 (87)
T cd06492 56 KVEESSWLI-EDGKVVTVNLEKIN 78 (87)
T ss_pred cccccEEEE-eCCCEEEEEEEECC
Confidence 998888889 786 8999999974
No 42
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=65.24 E-value=72 Score=25.76 Aligned_cols=82 Identities=21% Similarity=0.194 Sum_probs=49.8
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 144 GAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
..+.|...++ ..++++. ..+.++++. ++++|.|+.+... . .....+... .. ...-+-.+.||..
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~---~~~~L~I~~~~~~--~--~~~~~~~~~----~~-~~~~~i~I~lP~~ 129 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISV---EGGTLTIKSKDRE--S--FFFKGFNFN----NS-DNKSKITIYLPKD 129 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEE---cCCEEEEEEeccc--c--cccceEEEc----cc-CCCcEEEEEECCC
Confidence 3566766444 3344454 222466666 7899999877221 0 011112110 00 2456778999999
Q ss_pred cccCceEEEeCCCCEEEEE
Q 025769 224 VNTEDFTGKFGTDGILEGL 242 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtIt 242 (248)
...++++.+- .+|=+++.
T Consensus 130 ~~l~~i~i~~-~~G~i~i~ 147 (166)
T PF13349_consen 130 YKLDKIDIKT-SSGDITIE 147 (166)
T ss_pred CceeEEEEEe-ccccEEEE
Confidence 9888999999 78988764
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=61.12 E-value=17 Score=28.01 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=28.9
Q ss_pred CeEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 211 PGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 211 ~G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
-..|.-...|| .++.++|+-++ ++|.|+|+--+.
T Consensus 7 ~~~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~ 40 (87)
T cd06482 7 SSNVLASVDVC-GFEPDQVKVKV-KDGKVQVSAERE 40 (87)
T ss_pred CCEEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEe
Confidence 35677789999 58999999999 899999998764
No 44
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=58.14 E-value=14 Score=27.79 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEE
Q 025769 152 DDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKG 185 (248)
Q Consensus 152 ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsG 185 (248)
-..|.-.+.||.++.+.++-++ .||.|+|+-
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~~---~dGvL~I~l 91 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAKY---ENGVLKITL 91 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEEE---ECCEEEEEE
Confidence 3567777899999999988888 999999974
No 45
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=57.32 E-value=20 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=25.4
Q ss_pred eEEEEEEcC-CCCCCCeEEEEEecCCCeEEEEEE
Q 025769 154 SYAFRVALP-GVARDEKDFTCDIDPDGKVTIKGV 186 (248)
Q Consensus 154 ~yvI~vdLP-GV~keDIeVsv~I~~d~~L~IsGe 186 (248)
+|.=.+.|| +|+.+.|+-++ .++|.|+|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~--~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAML--CHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEE--cCCCEEEEEec
Confidence 788889999 99999766553 37999999874
No 46
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=52.19 E-value=27 Score=25.86 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=28.7
Q ss_pred EEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 213 HFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 213 ~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
.|.-.+.||. +.+++|+-.. +++.|+|+-.+.
T Consensus 8 ~~~v~~dlpG-~~~edI~v~v-~~~~L~I~g~~~ 39 (83)
T cd06526 8 KFQVTLDVKG-FKPEELKVKV-SDNKLVVEGKHE 39 (83)
T ss_pred eEEEEEECCC-CCHHHcEEEE-ECCEEEEEEEEe
Confidence 6888899997 9999999999 899999998764
No 47
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=51.81 E-value=31 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=27.9
Q ss_pred eEEEEEEECCCCcccCceEEEeCCCCEEEEEEee
Q 025769 212 GHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 212 G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK 245 (248)
..|.-.+.|| .+++++|+-+. ++|.|+|+--+
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~ 38 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKH 38 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEE
Confidence 5688889999 69999999999 89999998754
No 48
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=51.18 E-value=29 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=28.3
Q ss_pred eEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 212 GHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 212 G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
..|.-.+.||. ++.++|+-.. +++.|+|+-.+.
T Consensus 11 ~~~~v~~~lPG-~~kedi~v~~-~~~~L~I~g~~~ 43 (90)
T cd06470 11 NNYRITLAVAG-FSEDDLEIEV-ENNQLTVTGKKA 43 (90)
T ss_pred CeEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEc
Confidence 56778899997 8999999999 899999996553
No 49
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=50.75 E-value=25 Score=26.58 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.8
Q ss_pred eEEEEEEcC-CCCCCCeEEEEEecCCCeEEEEEEE
Q 025769 154 SYAFRVALP-GVARDEKDFTCDIDPDGKVTIKGVT 187 (248)
Q Consensus 154 ~yvI~vdLP-GV~keDIeVsv~I~~d~~L~IsGer 187 (248)
+|.=.+.|| +++.+.|+-++ .+||.|+|...+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~--~~dGvL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSL--SPDGVLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEe--CCCCEEEEEEeC
Confidence 477789998 79999877777 239999998754
No 50
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=48.80 E-value=24 Score=26.60 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.5
Q ss_pred cCCeEEEEEEcC-CCCCCCeEEEEEecCCCeEEEEE
Q 025769 151 SDDSYAFRVALP-GVARDEKDFTCDIDPDGKVTIKG 185 (248)
Q Consensus 151 ~ed~yvI~vdLP-GV~keDIeVsv~I~~d~~L~IsG 185 (248)
....|.-.+.|| +++.+.++-++ .||.|+|+-
T Consensus 58 ~~g~f~r~i~LP~~v~~~~i~A~~---~nGvL~I~l 90 (92)
T cd06472 58 SSGRFVRRFRLPENADADEVKAFL---ENGVLTVTV 90 (92)
T ss_pred eccEEEEEEECCCCCCHHHCEEEE---ECCEEEEEe
Confidence 456899999999 68899898888 899999974
No 51
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=48.27 E-value=32 Score=26.05 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=27.6
Q ss_pred eEEEEEEECCCCcccCceEEEeCCCCEEEEEEee
Q 025769 212 GHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 212 G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK 245 (248)
..|.-.+.||. +++++|+.+. +||.|+|+--+
T Consensus 7 d~y~v~~dlpG-~~~edi~V~v-~~~~L~I~g~~ 38 (83)
T cd06476 7 DKYQVFLDVCH-FTPDEITVRT-VDNLLEVSARH 38 (83)
T ss_pred CeEEEEEEcCC-CCHHHeEEEE-ECCEEEEEEEE
Confidence 56777899997 8899999999 89999998765
No 52
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=47.60 E-value=35 Score=25.88 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=27.9
Q ss_pred eEEEEEEECCCCcccCceEEEeCCCCEEEEEEee
Q 025769 212 GHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 212 G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK 245 (248)
..|.-.+.||. +++++|+-+. ++|+|+|+--+
T Consensus 10 ~~~~v~~dlpG-~~~edi~V~v-~~~~L~I~g~~ 41 (86)
T cd06497 10 DKFTIYLDVKH-FSPEDLTVKV-LDDYVEIHGKH 41 (86)
T ss_pred CEEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEE
Confidence 57888899997 8899999999 89999998754
No 53
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=47.60 E-value=82 Score=29.77 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=62.2
Q ss_pred eeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCc
Q 025769 145 AVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPV 224 (248)
Q Consensus 145 ~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~V 224 (248)
+.|+..++...+|.+..-|..++.-.|.. +...|.|.-.-..+ ..+|...+.|=.-|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iea---n~~~l~V~ivf~~g--------------------na~fd~d~kLwgvv 272 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEA---NGTTLHVSIVFGFG--------------------NASFDLDYKLWGVV 272 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeee---CCeEEEEEEEecCC--------------------Cceeeccceeeeee
Confidence 67999999999999999999988666665 55567766444221 23577778888889
Q ss_pred ccCceEEEeCCCCEEEEEEeeecC
Q 025769 225 NTEDFTGKFGTDGILEGLVKKSVA 248 (248)
Q Consensus 225 D~e~I~A~fr~nGVLtItlPK~ea 248 (248)
+.++..+.+ -.--.+|+|+|+++
T Consensus 273 nve~s~v~m-~~tkVEIsl~k~ep 295 (320)
T KOG1667|consen 273 NVEESSVVM-GETKVEISLKKAEP 295 (320)
T ss_pred chhhceEEe-ecceEEEEEeccCC
Confidence 999999999 57789999999874
No 54
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=47.12 E-value=40 Score=25.54 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=28.3
Q ss_pred eEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 212 GHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 212 G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
..|.-.+.|| .+++++|+-+. ++|.|+|+--|.
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~ 40 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKL 40 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEe
Confidence 4677889999 58999999999 899999987654
No 55
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=45.28 E-value=44 Score=26.08 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=25.1
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEEecCCCeEEEEE
Q 025769 153 DSYAFRVALP-GVARDEKDFTCDIDPDGKVTIKG 185 (248)
Q Consensus 153 d~yvI~vdLP-GV~keDIeVsv~I~~d~~L~IsG 185 (248)
.+|.=.+.|| +|+.++|.-++ .++|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l--~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASL--SPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEe--CCCCeEEEEc
Confidence 6778889999 99999665554 5699999986
No 56
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=44.54 E-value=46 Score=23.73 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=28.9
Q ss_pred eEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 212 GHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 212 G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
..|.-.+.||. ++.++++-+. .++.|.|+..+.
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v-~~~~l~I~g~~~ 39 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEV-EDGVLTISGERE 39 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEe
Confidence 46888899999 9999999999 799999997664
No 57
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=44.26 E-value=58 Score=25.75 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=29.7
Q ss_pred cceeeEEEcCCeEEEEEEcCCC-----CCCCeEEEEEecCCCeEEEE
Q 025769 143 IGAVDIAESDDSYAFRVALPGV-----ARDEKDFTCDIDPDGKVTIK 184 (248)
Q Consensus 143 ~P~vDI~E~ed~yvI~vdLPGV-----~keDIeVsv~I~~d~~L~Is 184 (248)
.|+|.|+++++.|.|.+--+.- +++...|.- ++|.+-|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~---~~g~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQE---EDGNLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEE---eCCEEEEe
Confidence 4899999999999999877665 455444554 77777776
No 58
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=44.23 E-value=1.2e+02 Score=26.82 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=53.6
Q ss_pred CcceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECC
Q 025769 142 GIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLP 221 (248)
Q Consensus 142 ~~P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP 221 (248)
..|.|-+.+..+-+.+++.++-.+-. +|.+ +..+|+++|.... +.. .+.-.|.|=
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~~d~--~v~~---e~~~l~fs~k~~~-------d~~-------------~~~~~ief~ 60 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDAKDV--HVNL---EPSKLTFSCKSGA-------DNH-------------KYENEIEFF 60 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccCccc--eeec---cccEEEEEeccCC-------Cce-------------eeEEeeehh
Confidence 45778889999999999999876655 6666 6679999998753 111 233457888
Q ss_pred CCcccCceEEEeCCCCEEEEEEee
Q 025769 222 GPVNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 222 ~~VD~e~I~A~fr~nGVLtItlPK 245 (248)
..||+++.+-+- . +-+...+++
T Consensus 61 ~eIdpe~sk~k~-~-~r~if~i~~ 82 (180)
T KOG3158|consen 61 DEIDPEKSKHKR-T-SRSIFCILR 82 (180)
T ss_pred hhcCHhhccccc-c-ceEEEEEEE
Confidence 899999887776 3 444444433
No 59
>PRK10743 heat shock protein IbpA; Provisional
Probab=42.84 E-value=41 Score=27.96 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.8
Q ss_pred EEEEEEECCCCcccCceEEEeCCCCEEEEEEee
Q 025769 213 HFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 213 ~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK 245 (248)
.|.-...|| .++.++|+-++ ++|+|+|+--+
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~ 76 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITA-QDNLLVVKGAH 76 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEE
Confidence 455567888 47888888888 78888888654
No 60
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=41.65 E-value=64 Score=24.25 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=27.1
Q ss_pred CeEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 211 PGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 211 ~G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
-..|.-.+.|| .++.++++-++ +++.|.|+.-+.
T Consensus 6 ~~~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~ 39 (102)
T PF00011_consen 6 EDEYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRK 39 (102)
T ss_dssp SSEEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEE
T ss_pred CCEEEEEEECC-CCChHHEEEEE-ecCccceeceee
Confidence 36788889999 58899999999 899999987664
No 61
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=40.31 E-value=36 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=20.2
Q ss_pred CCCCCCCeEEEEEecCCCeEEEEEEEecc
Q 025769 162 PGVARDEKDFTCDIDPDGKVTIKGVTTTG 190 (248)
Q Consensus 162 PGV~keDIeVsv~I~~d~~L~IsGer~~~ 190 (248)
++++..+|+|.+ .+|.++++|.-...
T Consensus 12 ~~~~~~~i~v~v---~~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSV---ENGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEE---ECTEEEEEEEESSC
T ss_pred cccCCCeEEEEE---ECCEEEEEeeCcHH
Confidence 356667888988 89999999998763
No 62
>PF01581 FARP: FMRFamide related peptide family; InterPro: IPR002544 The neuropeptide Phe-Met-Arg-Phe-NH2 (FMRFamide) is a potent cardioactive neuropeptide in Lymnaea stagnalis []. FMRFamide (Phe-Met-Arg-Phe-NH2) was first demonstrated to be cardioactive in several molluscan species. FMRFamide is now known to be cardioexcitatory in mammals, to inhibit morphine-induced antinociception, and to block morphine-, defeat-, and deprivation-induced feeding []. Thirteen neuropeptides varying in length from 7 to 11 residues and ending C-terminally in -Phe-Met-Arg-Phe-NH2 (calliFMRFamides 1-13) and one dodecapeptide ending in -Met-Ile-Arg-Phe-NH2 (calliMIRFamide 1) have been isolated from thoracic ganglia of the blowfly Calliphora vomitoria. Results indicate that the N terminus (in addition to the C terminus as previously found for FMRFamides of other organisms) is crucial for at least some biological activities [].; GO: 0007218 neuropeptide signaling pathway
Probab=37.19 E-value=15 Score=18.26 Aligned_cols=7 Identities=57% Similarity=1.208 Sum_probs=5.5
Q ss_pred ccccccc
Q 025769 43 SFGRFGK 49 (248)
Q Consensus 43 ~~~~~~~ 49 (248)
.|.||||
T Consensus 5 ~~~RFGr 11 (11)
T PF01581_consen 5 NFMRFGR 11 (11)
T ss_pred cccccCC
Confidence 5888886
No 63
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=34.97 E-value=30 Score=30.04 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=23.3
Q ss_pred EEcC-CCCCCCeEEEEEecCCCeEEEEEEEec
Q 025769 159 VALP-GVARDEKDFTCDIDPDGKVTIKGVTTT 189 (248)
Q Consensus 159 vdLP-GV~keDIeVsv~I~~d~~L~IsGer~~ 189 (248)
.-|| ||+++. |+..+..||.|+|+|.+..
T Consensus 121 y~LP~~vdp~~--V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 121 YLLPEDVDPTS--VTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred ecCCCCCChhh--eEEeeCCCceEEEEccCCC
Confidence 5566 899994 5566689999999998876
No 64
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=33.29 E-value=88 Score=23.66 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=28.3
Q ss_pred CeEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 211 PGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 211 ~G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
-..|.-.+.||. +++++|+-++ .++.|+|+--+.
T Consensus 9 ~~~~~v~~dlPG-~~~edi~V~v-~~~~L~I~g~~~ 42 (86)
T cd06475 9 ADRWKVSLDVNH-FAPEELVVKT-KDGVVEITGKHE 42 (86)
T ss_pred CCeEEEEEECCC-CCHHHEEEEE-ECCEEEEEEEEC
Confidence 357888899996 8999999999 899999987653
No 65
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=32.34 E-value=26 Score=33.41 Aligned_cols=80 Identities=16% Similarity=0.044 Sum_probs=58.7
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 144 GAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 144 P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
-++|+.++.+...|-+--|-+..++|.+-+ +.|+|.|+-+-.. .. --|...+.|-..
T Consensus 177 i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~---e~NTL~I~~q~~~-------~~-------------~~~~~~~~Ly~e 233 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVL---EGNTLSISYQPRR-------LR-------------LWNDITISLYKE 233 (368)
T ss_pred eeeeccccceeEEEEEecCCCCccccceee---cCCcceeeeeccc-------cc-------------hHHHhhhhhhhh
Confidence 468888999999999999999999888887 8889998754432 11 123445777888
Q ss_pred cccCceEEEeCCCCEEEEEEeeec
Q 025769 224 VNTEDFTGKFGTDGILEGLVKKSV 247 (248)
Q Consensus 224 VD~e~I~A~fr~nGVLtItlPK~e 247 (248)
|+++..+-+. ---+++|+|.|.+
T Consensus 234 v~P~~~s~k~-fsK~~e~~l~KV~ 256 (368)
T COG5091 234 VYPDIRSIKS-FSKRVEVHLRKVE 256 (368)
T ss_pred cCcchhhhhh-cchhheehhhhhh
Confidence 8888777665 3567777777653
No 66
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=32.02 E-value=4.5e+02 Score=24.93 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=54.1
Q ss_pred eeeEEEcCCe--EEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCC
Q 025769 145 AVDIAESDDS--YAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPG 222 (248)
Q Consensus 145 ~vDI~E~ed~--yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~ 222 (248)
.+++.++++. +.+.+.=|+.+.+...+.+ .-+|++.-..-.+ ...-.|.-....+..+....+-++.||.
T Consensus 71 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~Y~v~~~v~~~~D--~~el~w~~~g~~~~~~i~~v~v~i~~P~ 142 (511)
T PF09972_consen 71 TYGIEETDDGYEIRIGIYDPSKNGGTHTYTI------SYTVKNAVTNYSD--VAELYWNFIGSGWDVPIENVTVTITLPK 142 (511)
T ss_pred ceEEEecCCcceEEEEecCccccCCeEEEEE------EEEEECceEEcCC--eeEEEEEEecCCCCCccceEEEEEECCC
Confidence 5788888888 5555555555445555655 3344443332111 1112222222233567889999999998
Q ss_pred CcccCceEEE-----------eCCCCEEEEEEeee
Q 025769 223 PVNTEDFTGK-----------FGTDGILEGLVKKS 246 (248)
Q Consensus 223 ~VD~e~I~A~-----------fr~nGVLtItlPK~ 246 (248)
+++..++-+. . ++|.++++.++.
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~-~~~~v~~~~~~l 176 (511)
T PF09972_consen 143 PVDNSKAWGHPGPYGGTVEIDD-DDGTVTFTTDNL 176 (511)
T ss_pred CCcceEEEEeccCCCccceeee-cCCEEEEEEecc
Confidence 8877666555 4 567777776653
No 67
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=31.26 E-value=96 Score=23.52 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=27.2
Q ss_pred eEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 212 GHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 212 G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
..|.-.+.||. +.+++|+-++ +++.|+|+--+.
T Consensus 7 d~~~v~~dlpG-~~~edI~V~v-~~~~L~I~g~~~ 39 (87)
T cd06481 7 EGFSLKLDVRG-FSPEDLSVRV-DGRKLVVTGKRE 39 (87)
T ss_pred ceEEEEEECCC-CChHHeEEEE-ECCEEEEEEEEe
Confidence 35677788987 8899999999 899999987653
No 68
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=28.96 E-value=91 Score=26.22 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=23.8
Q ss_pred EEEEEEECCCCcccCceEEEeCCCCEEEEEEee
Q 025769 213 HFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245 (248)
Q Consensus 213 ~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK 245 (248)
.|.-...||. ++.++|+-.+ ++|.|+|+--+
T Consensus 44 ~y~v~adlPG-v~kedi~V~v-~~~~LtI~ge~ 74 (142)
T PRK11597 44 HYRITLALAG-FRQEDLDIQL-EGTRLTVKGTP 74 (142)
T ss_pred EEEEEEEeCC-CCHHHeEEEE-ECCEEEEEEEE
Confidence 4566688884 7888888888 78888887654
No 69
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=28.10 E-value=29 Score=29.96 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred CCCCcccCceEEEeCCCCEEEEEEe
Q 025769 220 LPGPVNTEDFTGKFGTDGILEGLVK 244 (248)
Q Consensus 220 LP~~VD~e~I~A~fr~nGVLtItlP 244 (248)
|-+.++.+..-+.| .||||||.|+
T Consensus 65 l~e~~~~~~~Dv~y-~~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDY-ADGVLTLKLG 88 (156)
T ss_pred HHhhcCcccccccc-ccceEEEEec
Confidence 44556667778899 8999999987
No 70
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=1.2e+02 Score=24.88 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=23.8
Q ss_pred EEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769 213 HFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS 246 (248)
Q Consensus 213 ~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~ 246 (248)
.|...+.||. ++.++|+-++ .++.|+|+.-+.
T Consensus 51 ~~~I~~elPG-~~kedI~I~~-~~~~l~I~g~~~ 82 (146)
T COG0071 51 EYRITAELPG-VDKEDIEITV-EGNTLTIRGERE 82 (146)
T ss_pred EEEEEEEcCC-CChHHeEEEE-ECCEEEEEEEec
Confidence 4555677776 7788888888 788888887664
No 71
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=25.59 E-value=1.8e+02 Score=26.11 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=28.7
Q ss_pred EEEEecCCCeEEEEEEEeccceeeecCccEE--EEEeeccCCCeEEEEEEECCC
Q 025769 171 FTCDIDPDGKVTIKGVTTTGEKTVCKQNQVF--KMLTQNLSPPGHFSISFKLPG 222 (248)
Q Consensus 171 Vsv~I~~d~~L~IsGer~~~e~~~~~~~~y~--r~e~r~e~~~G~F~Rs~~LP~ 222 (248)
+++ ++|.|+|++.+..... ......|. ++..+..+.||.|+-++.||.
T Consensus 60 v~v---~~G~L~i~a~~~~~~~-~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSV---EDGNLVLSATRHPGTE-LGNGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEE---ECCEEEEEEEcCCCCc-CCCCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 566 7899999998765210 00111111 112233456899999999996
No 72
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=25.08 E-value=2e+02 Score=29.39 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=32.7
Q ss_pred eeeEEEcCC------eEEEEEEcCCCCC-----CCeEEEEEecCCCeEEEEEEEe
Q 025769 145 AVDIAESDD------SYAFRVALPGVAR-----DEKDFTCDIDPDGKVTIKGVTT 188 (248)
Q Consensus 145 ~vDI~E~ed------~yvI~vdLPGV~k-----eDIeVsv~I~~d~~L~IsGer~ 188 (248)
.++|+|.+. .++=++.|.|+.+ ..|+|+++++.+|.|+|++...
T Consensus 412 ~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~ 466 (595)
T PRK01433 412 QFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEK 466 (595)
T ss_pred EEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEc
Confidence 356777553 3455778888765 3689999999999999998754
No 73
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=23.30 E-value=2.7e+02 Score=19.52 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=28.6
Q ss_pred eeEE-EcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEE
Q 025769 146 VDIA-ESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVT 187 (248)
Q Consensus 146 vDI~-E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer 187 (248)
+.+. -..+.|.|++..||+..-.-+|.+ ..+....|+..-
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v--~~~~~~~v~~~L 67 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTV--KPGETTTVNVTL 67 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEE--CCCCEEEEEEEE
Confidence 3555 357899999999999887655655 456667666553
No 74
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=23.23 E-value=2.8e+02 Score=24.06 Aligned_cols=57 Identities=12% Similarity=0.023 Sum_probs=31.2
Q ss_pred CCCCCCCeEEEEEecCCCeEEEEEEEeccce--eeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 162 PGVARDEKDFTCDIDPDGKVTIKGVTTTGEK--TVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 162 PGV~keDIeVsv~I~~d~~L~IsGer~~~e~--~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
.-.++++ +++ ++|.|.|++.+..... ...-.+..+....+....||.|+-++.+|..
T Consensus 33 ~~~~~~n--v~v---~~G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 33 YTYRPEN--AYV---EDGNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred EeCCCCC--eEE---ECCEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 3456664 455 6889999988764210 0000011111111223458999999999963
No 75
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=22.93 E-value=1.6e+02 Score=27.71 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=27.7
Q ss_pred EEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCC
Q 025769 171 FTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGP 223 (248)
Q Consensus 171 Vsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~ 223 (248)
+++ .+|.|.|++.+.......-....+ ....+..+.||.|+-++.||..
T Consensus 43 v~v---~~G~L~I~a~~~~~~~~~ytSg~i-~T~~k~~f~yG~~EaR~klp~~ 91 (295)
T cd02180 43 VTT---INGSLRITMDQFRNHGLNFRSGML-QSWNKLCFTGGYIEASASLPGK 91 (295)
T ss_pred eEe---cCCeEEEEEEeecCCCCCEEEEEE-EECCcceeeCCEEEEEEECCCC
Confidence 455 789999999875311000001111 1111234458999999999963
No 76
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=21.55 E-value=2.1e+02 Score=24.78 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEECCC
Q 025769 177 PDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPG 222 (248)
Q Consensus 177 ~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~ 222 (248)
++|.|.|++.+.......-....+ .. ++.+.||.|+-++.+|.
T Consensus 37 ~~g~L~l~~~~~~~~~~~~tsg~i-~S--~~~f~yG~~ear~k~~~ 79 (212)
T cd02175 37 SDGGLALTLTNDTYGEKPYACGEY-RT--RGFYGYGRYEVRMKPAK 79 (212)
T ss_pred ECCeEEEEEeCCcCCCCccccceE-EE--CceEEeeEEEEEEEcCC
Confidence 577888888765311000111211 11 11234899999999885
No 77
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=20.72 E-value=2.3e+02 Score=20.42 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=25.9
Q ss_pred eEEEEEEECCCCcccCceEEEeCCCCEEEEEEe
Q 025769 212 GHFSISFKLPGPVNTEDFTGKFGTDGILEGLVK 244 (248)
Q Consensus 212 G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlP 244 (248)
....-.|.+|..++.++++..+ .+--|+|++.
T Consensus 8 ~~V~i~i~~~~~~~~~dv~v~~-~~~~l~v~~~ 39 (85)
T cd06467 8 DEVTVTIPLPEGTKSKDVKVEI-TPKHLKVGVK 39 (85)
T ss_pred CEEEEEEECCCCCcceeEEEEE-EcCEEEEEEC
Confidence 4466778899999999999999 6777888775
Done!