RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025769
(248 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 59.5 bits (145), Expect = 6e-12
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQ 206
D+ E+DD+Y LPG +++ + DG +TI G E+ + +
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVE---DGVLTISGEREEEEEEE-------ENYLR 50
Query: 207 NLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILE 240
G FS SF+LP V+ + +G+L
Sbjct: 51 RERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLT 83
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 49.5 bits (119), Expect = 2e-08
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 148 IAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQN 207
++DD V LPGV ++D +++ D +TI G E+
Sbjct: 1 WYQTDDEVVVTVDLPGV--KKEDIKVEVE-DNVLTISGKREEEEERER------------ 45
Query: 208 LSPPGHFSISFKLPGPVNTEDFTGKFGTDGILE 240
G F SF+LP V+ E +G+LE
Sbjct: 46 --SYGEFERSFELPEDVDPEKSKASL-ENGVLE 75
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 40.1 bits (94), Expect = 2e-04
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 145 AVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKML 204
VDI E+DD Y LPGV D++D ++ +TI+G E+ ++ + +
Sbjct: 42 PVDIEETDDEYRITAELPGV--DKEDIEITVE-GNTLTIRG-EREEEEEEEEEGYLRRER 97
Query: 205 TQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILE 240
G F +F+LP V+ E K+ +G+L
Sbjct: 98 -----AYGEFERTFRLPEKVDPEVIKAKY-KNGLLT 127
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 38.3 bits (90), Expect = 4e-04
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQ 206
DI E D++ ++ +PG +E + D +V +KG + + + +
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVE---DNRVLVKG----KHEKEEEDDHGLRS--- 50
Query: 207 NLSPPGHFSISFKLPGPVNTEDFTGKFGTDGIL 239
FS F LP + + DG+L
Sbjct: 51 -ERSYRSFSRKFVLPENADPDKVKASL-KDGVL 81
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 36.3 bits (85), Expect = 0.002
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 146 VDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLT 205
DI E+DD Y LPG ++D D DG +TI + ++++ +
Sbjct: 3 TDIKETDDEYIVEADLPGF--KKEDIKLDYK-DGYLTISAKRDESKD---EKDKKGNYIR 56
Query: 206 QNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGIL 239
+ G FS SF LP V+ E+ K+ +G+L
Sbjct: 57 RERY-YGSFSRSFYLPN-VDEEEIKAKY-ENGVL 87
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 30.4 bits (69), Expect = 0.22
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 146 VDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKV-TIKGVTTTGEKTVCKQNQVFKML 204
VD E+ +++ F+ +PGV +++ + DG+V I G +K K+ + +
Sbjct: 2 VDWKETPEAHVFKADVPGVKKEDVKVEVE---DGRVLRISG---ERKKEEEKKGDDWHRV 55
Query: 205 TQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245
+ G F F+LP + ++ +G+L V K
Sbjct: 56 ER---SSGRFVRRFRLPENADADEVKAFL-ENGVLTVTVPK 92
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the
N-terminal half. The extreme C-terminal region consists
of a motif with consensus sequence MSEP, then a
transmembrane alpha helix, then a short region with
several basic residues. This region, hereby dubbed
MSEP-CTERM, resembles other putative sorting signals
associated with the archaeosortase/exosortase protein
family (see TIGR04178). Genes for all members of this
family are found next to a gene for exosortase K.
Length = 920
Score = 29.7 bits (67), Expect = 1.9
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 8 SVGNIMRSSINIPVYFF---VFPVFFSLLRL 35
+ + M SSIN P+Y + +F+ +L L
Sbjct: 99 DIPDWMISSINFPLYPLYLLMPAIFYLILDL 129
>gnl|CDD|221236 pfam11807, DUF3328, Domain of unknown function (DUF3328). This
family of proteins are functionally uncharacterized.
This family is only found in eukaryotes.
Length = 215
Score = 28.4 bits (63), Expect = 2.5
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 17 INIPVYFFVFPVFFSLLRLQTMTNLRSFGRFGKTTEIDEPEHDNPQQHVLDVAPLNSMPY 76
+ + F + F L + L ++ + + D L+ PY
Sbjct: 21 LFASLLLFALALLFRSLPRKCAKQLSAYSPALDAIKY--------ETVRFDGDFLSHSPY 72
Query: 77 IGPPTPPSD 85
GPP+P D
Sbjct: 73 RGPPSPEVD 81
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase.
Length = 633
Score = 28.7 bits (64), Expect = 3.8
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 88 STSRKQETEAAENVGPAMVFLPSYSTREELDNIIAVTKTGVALTG 132
ST + ++ + + + YS R L I+ + G L G
Sbjct: 3 STGKTHQSSHEGDTTASPITPSKYSNRVVLKTILGRSDGGAGLVG 47
>gnl|CDD|220191 pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for
Clustered, Regularly Interspaced Short Palidromic
Repeats. A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This family is represented
by CT1975 of Chlorobium tepidum.
Length = 353
Score = 28.4 bits (64), Expect = 4.1
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 104 AMVFLPSYSTREELDNIIAVTKTGVA-LTGVAALGKVGTGIGAVDIA 149
++FL EE+ + + + L K+ AVDIA
Sbjct: 109 QLLFLS----PEEIAALAQLAEEHAEDLKAAKKEEKLRKKAKAVDIA 151
>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme
metabolism].
Length = 420
Score = 28.4 bits (64), Expect = 4.1
Identities = 35/111 (31%), Positives = 43/111 (38%), Gaps = 31/111 (27%)
Query: 111 YSTREEL-DNIIAVT------KTGVALTGVAALGKVGTGI-------GA-VDIAESDDSY 155
Y T + L D I+ T K V VA G VG GI GA V + E D
Sbjct: 189 YGTGQSLLDGILRATNVLLAGKNVV----VAGYGWVGRGIAMRLRGMGARVIVTEVDPIR 244
Query: 156 AFRVALPG---VARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKM 203
A A+ G + +E T DI VT TG K V ++ KM
Sbjct: 245 ALEAAMDGFRVMTMEEAAKTGDI---------FVTATGNKDVIRKEHFEKM 286
>gnl|CDD|117964 pfam09424, YqeY, Yqey-like protein. The function of this domain
found in the YqeY protein is uncertain.
Length = 143
Score = 27.5 bits (62), Expect = 4.2
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 107 FLPSYSTREELDNII--AVTKTGVALTGVAALGKV 139
+LP + EE++ ++ A+ + G T + +GKV
Sbjct: 86 YLPQQLSDEEIEALVDEAIAEVGA--TSMKDMGKV 118
>gnl|CDD|153159 cd04887, ACT_MalLac-Enz, ACT_MalLac-Enz CD includes the N-terminal
ACT domain of putative NAD-dependent malic enzyme 1,
Bacillus subtilis YqkI and related domains. The
ACT_MalLac-Enz CD includes the N-terminal ACT domain of
putative NAD-dependent malic enzyme 1, Bacillus subtilis
YqkI, a malolactic enzyme (MalLac-Enz) which converts
malate to lactate, and other related ACT domains. The
yqkJ product is predicted to convert malate directly to
lactate, as opposed to related malic enzymes that
convert malate to pyruvate. Members of this CD belong to
the superfamily of ACT regulatory domains.
Length = 74
Score = 25.7 bits (57), Expect = 7.2
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 11/45 (24%)
Query: 134 AALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPD 178
A+G+ G IGA+D+ E Y R D T D +
Sbjct: 18 TAIGEAGGDIGAIDLVEQGRDYTVR-----------DITVDAPSE 51
>gnl|CDD|222556 pfam14121, DUF4289, Domain of unknown function (DUF4289). This
family of membrane bet-barrel proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
655 and 722 amino acids in length. SRU_1264 is
identified by Gene3D as a membrane bound beta-barrel.
Length = 618
Score = 27.6 bits (62), Expect = 7.6
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 192 KTVCKQNQVFK-MLTQNLSPPGHFSISFK 219
KT Q Q + TQN++ +F ++K
Sbjct: 97 KTAGDQGQRLDALFTQNINKRLNFGFAYK 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,737,568
Number of extensions: 1211917
Number of successful extensions: 1112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 21
Length of query: 248
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 154
Effective length of database: 6,768,326
Effective search space: 1042322204
Effective search space used: 1042322204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)