RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025769
         (248 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 140 GTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQ 199
           G G   + I E D        LPGV +++                 +    +++     +
Sbjct: 7   GKGFMPISIIEGDQHIKVIAWLPGVNKEDIILN--------AVGDTLEIRAKRSPLMITE 58

Query: 200 VFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245
             +++   +        + KLP  V  E+ + KF  +G+L  ++ K
Sbjct: 59  SERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPK 103


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 145 AVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKML 204
            +D  E+ +++ F+  LPG    +++   +++    + + G  T  ++    +    +  
Sbjct: 44  RMDWKETPEAHVFKADLPG--VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER- 100

Query: 205 TQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKSVA 248
                  G F   F+L      E+       +G+L   V K+  
Sbjct: 101 -----SSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEV 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 901,221
Number of extensions: 41797
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)