BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025771
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JR6|A Chain A, Sequential Reorganization Of Beta-Sheet Topology By
           Insertion Of A Single Strand
 pdb|3JR6|B Chain B, Sequential Reorganization Of Beta-Sheet Topology By
           Insertion Of A Single Strand
 pdb|3JR6|C Chain C, Sequential Reorganization Of Beta-Sheet Topology By
           Insertion Of A Single Strand
 pdb|3JR6|D Chain D, Sequential Reorganization Of Beta-Sheet Topology By
           Insertion Of A Single Strand
          Length = 170

 Score = 32.0 bits (71), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 202 KMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSDSEEVSEPE 248
           +M+      RL  Y+D   YY    GH+LGI  LL  S S   ++ E
Sbjct: 5   EMLRIDEGLRLKIYKDTEGYYTIGIGHLLGIGHLLTKSPSLNAAKSE 51


>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
          Length = 109

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 188 CPYCKAKLWSMLQAKMIPQSASCRL 212
           CPYCKA L ++ Q   +P+S +  L
Sbjct: 27  CPYCKATLSTLFQELNVPKSKALVL 51


>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
 pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
          Length = 129

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 188 CPYCKAKLWSMLQAKMIPQSASCRL 212
           CPYCKA L ++ Q   +P+S +  L
Sbjct: 47  CPYCKATLSTLFQELNVPKSKALVL 71


>pdb|1JC9|A Chain A, Tachylectin 5a From Tachypleus Tridentatus (Japanese
           Horseshoe Crab)
          Length = 269

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 68  APKMMVDLQSSGSHSV-DGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSG 126
           A  ++   +SSG + +   +W  +G L +YC     GG +  IQ  G++ N + +     
Sbjct: 50  ADILLNGYRSSGGYRIWPKSWMTVGTLNVYCDMETDGGGWTVIQRRGNYGNPSDYFYKPW 109

Query: 127 KSFLL 131
           K++ L
Sbjct: 110 KNYKL 114


>pdb|2DDU|A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin
          Length = 387

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 77  SSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVN-KTRFS--RTSGKSFLLPQ 133
           +S     +GN R L +  +Y +G  +     +I IP    + KTRF   + S     +P 
Sbjct: 123 ASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPP 182

Query: 134 CRTDVLYVSDPC 145
              D +Y+S+PC
Sbjct: 183 FGLDGVYISEPC 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,553,094
Number of Sequences: 62578
Number of extensions: 294012
Number of successful extensions: 1111
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 5
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)