Query 025772
Match_columns 248
No_of_seqs 155 out of 421
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3221 Glycolipid transfer pr 100.0 1.2E-50 2.5E-55 346.3 18.4 188 59-247 12-199 (199)
2 PF08718 GLTP: Glycolipid tran 100.0 3.1E-49 6.7E-54 329.2 13.5 146 63-208 1-148 (149)
3 KOG4189 Uncharacterized conser 100.0 2.3E-47 4.9E-52 325.4 21.2 200 32-245 6-208 (209)
4 PF13496 DUF4120: Domain of un 49.3 5.4 0.00012 30.7 -0.1 13 172-184 81-93 (95)
5 KOG2875 8-oxoguanine DNA glyco 39.3 49 0.0011 31.0 4.5 79 86-174 120-215 (323)
6 PF10815 ComZ: ComZ; InterPro 39.0 86 0.0019 22.1 4.6 45 187-236 6-50 (56)
7 cd07669 BAR_SNX33 The Bin/Amph 31.2 1E+02 0.0022 27.4 5.0 53 35-96 49-102 (207)
8 KOG2427 Uncharacterized conser 27.6 36 0.00077 33.0 1.7 69 176-246 133-210 (391)
9 PF09205 DUF1955: Domain of un 27.4 2.3E+02 0.005 24.0 6.2 33 73-108 49-81 (161)
10 cd07668 BAR_SNX9 The Bin/Amphi 26.9 1.3E+02 0.0029 26.7 5.0 60 34-102 48-108 (210)
11 COG0598 CorA Mg2+ and Co2+ tra 26.5 5.1E+02 0.011 23.8 10.8 92 70-175 134-229 (322)
12 cd07670 BAR_SNX18 The Bin/Amph 26.0 1.5E+02 0.0032 26.4 5.1 58 36-102 50-108 (207)
13 KOG4025 Putative apoptosis rel 25.6 4.5E+02 0.0098 22.9 10.4 78 135-244 70-151 (207)
14 PF08314 Sec39: Secretory path 24.7 1.3E+02 0.0027 31.1 5.1 125 66-199 515-655 (715)
15 PF04611 AalphaY_MDB: Mating t 23.8 4.3E+02 0.0094 22.0 8.5 88 145-239 48-135 (147)
16 cd06459 M3B_Oligoendopeptidase 22.9 6.3E+02 0.014 23.6 9.5 87 153-243 39-135 (427)
17 cd07626 BAR_SNX9_like The Bin/ 22.8 1.8E+02 0.004 25.4 5.1 52 36-96 42-94 (199)
18 COG0576 GrpE Molecular chapero 21.9 1.9E+02 0.0041 25.1 5.0 56 187-246 85-140 (193)
19 PF09409 PUB: PUB domain; Int 21.9 90 0.002 23.1 2.6 40 142-181 6-48 (87)
20 PRK14063 exodeoxyribonuclease 21.6 2.2E+02 0.0049 21.0 4.6 44 38-88 6-49 (76)
21 PF04424 DUF544: Protein of un 21.0 29 0.00063 27.8 -0.2 11 176-186 87-97 (121)
22 PF06070 Herpes_UL32: Herpesvi 20.9 2.9E+02 0.0062 29.6 6.7 71 138-224 4-85 (839)
23 cd07604 BAR_ASAPs The Bin/Amph 20.6 2.2E+02 0.0048 25.2 5.2 83 36-123 39-130 (215)
24 PRK14148 heat shock protein Gr 20.2 3E+02 0.0065 24.1 5.9 56 186-246 88-143 (195)
25 cd07639 BAR_ACAP1 The Bin/Amph 20.2 3E+02 0.0066 24.2 5.9 52 63-115 59-119 (200)
No 1
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=346.28 Aligned_cols=188 Identities=41% Similarity=0.663 Sum_probs=181.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCCCCCcchhH
Q 025772 59 DAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKA 138 (248)
Q Consensus 59 ~~~~~~I~t~~FL~ac~~l~~lfd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~~~~S~sra 138 (248)
-..+++|+|.|||+||.+|++|+|+||++|+||++||+|||.+++..|.+++.+|.+|+.+|+.|++....+ .+|||++
T Consensus 12 l~~d~~i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~-~~sat~a 90 (199)
T KOG3221|consen 12 LPDDGKIETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE-KVSATLA 90 (199)
T ss_pred CCcccCCccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-cchhhHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999998887 8999999
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhccccchhHHHHHHHHhhhCCChHHHHHHHccCCCChHHHHHH
Q 025772 139 FLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKDETYDNLKEE 218 (248)
Q Consensus 139 LLwL~RaL~Fi~~fl~~l~~~~~~sl~~~a~~AY~~tLap~HgW~vR~a~~~A~~~lPsR~~fl~~L~~~~e~e~~~~~~ 218 (248)
||||+|||+|+..||++|..+.++++.+++.+||+.||+|||||++|++|++|++++|+|++|++.++.++++.+...++
T Consensus 91 LLWLkRgldF~~~~l~~l~~~~~~~l~~av~daY~kTLK~~HGwI~q~~FkvaLklvP~r~~Fl~als~~d~t~~~~~ed 170 (199)
T KOG3221|consen 91 LLWLKRGLDFTLAFLQELVNGESDCLIQAVADAYEKTLKKYHGWIVQSTFKVALKLVPDRKTFLKALSAGDETYDECIED 170 (199)
T ss_pred HHHHHhHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 025772 219 MQTLTSLLVPFLEEIHSILRLQGLDMLKS 247 (248)
Q Consensus 219 m~~~~~~~~pvl~~I~~l~~~~~L~~l~~ 247 (248)
|+.|+..+.|.+..|+.+|+.+|++++++
T Consensus 171 i~~fl~~~~~~L~~i~~~l~~~~ld~~~~ 199 (199)
T KOG3221|consen 171 ITSFLSLLTPILKEIYFVLEQYGLDDLRS 199 (199)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999986
No 2
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=100.00 E-value=3.1e-49 Score=329.18 Aligned_cols=146 Identities=38% Similarity=0.730 Sum_probs=136.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH-hhCCcccchHHHHHHHHHHcCCCCCCCcchhHHHH
Q 025772 63 IHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFC-ELDPSKYANVVEILKKEASEGNARKKTSCSKAFLW 141 (248)
Q Consensus 63 ~~I~t~~FL~ac~~l~~lfd~LG~~F~fv~~Dv~~nI~kL~~~~-~~~~~~~~TL~~mv~~E~~~g~~~~~~S~sraLLw 141 (248)
++|++.+||++|++|++|||+||++|+||++||.+||++|++++ +.+|.+|.||++||++|++.|++++.+||+|+|||
T Consensus 1 n~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLw 80 (149)
T PF08718_consen 1 NDIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLW 80 (149)
T ss_dssp SEEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHH
Confidence 36899999999999999999999999999999999999999999 78999999999999999999999888999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhccccchhHHHHHHHHhhhCCChHHHHHHHccC
Q 025772 142 LTRSLDFMVALLQRLAKDPGQK-MEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAK 208 (248)
Q Consensus 142 L~RaL~Fi~~fl~~l~~~~~~s-l~~~a~~AY~~tLap~HgW~vR~a~~~A~~~lPsR~~fl~~L~~~ 208 (248)
|||||+|+..||+++..+++++ ++++|++||++||+|||||+||++|++||+++|+|++|+++++++
T Consensus 81 L~RaL~Fi~~~l~~l~~~~~~~~~~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~ 148 (149)
T PF08718_consen 81 LHRALEFIVAFLENLLESPDDEKLSDAAREAYDKTLAPYHGWIVRKAFKLALKALPSRSDFLKKLGGN 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHTS--BTBHHHHHHHHHHHHTGGGB-HHHHHHHHHHHHT--BHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC
Confidence 9999999999999999987765 999999999999999999999999999999999999999999864
No 3
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-47 Score=325.38 Aligned_cols=200 Identities=20% Similarity=0.311 Sum_probs=180.3
Q ss_pred hhhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCc
Q 025772 32 IEKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPS 111 (248)
Q Consensus 32 ~~~~~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lfd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~ 111 (248)
-.+|+.+|-++|+-+...+ ..++++|++.+|+.||.++++||++||++|+||.+||..||++|.++..+||+
T Consensus 6 ~~~~~~~i~~~~~~i~~~v--------~~e~~eV~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~e 77 (209)
T KOG4189|consen 6 QLGPLPKILQAFKTIEKSV--------IEEDNEVDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPE 77 (209)
T ss_pred hccchHHHHHHHHHHHHHh--------cCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 3568999999999999999 45566899999999999999999999999999999999999999988777765
Q ss_pred ccchHHHHHHHHHHcCCCCCCC--cchhHHHHHHhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhhccccchhHHHHH
Q 025772 112 KYANVVEILKKEASEGNARKKT--SCSKAFLWLTRSLDFMVALLQRLAKDPG-QKMEQAVEESYNIALKPWHGWISSAAF 188 (248)
Q Consensus 112 ~~~TL~~mv~~E~~~g~~~~~~--S~sraLLwL~RaL~Fi~~fl~~l~~~~~-~sl~~~a~~AY~~tLap~HgW~vR~a~ 188 (248)
|+..|++.++++...++.+ ||||+||+|+|||+|+..||.++...++ +|++++|++||++||+|||||+||+||
T Consensus 78 ---t~rtild~~~e~~~~~~~G~~Sgtr~Llrl~R~LefV~efl~~i~as~nD~s~~diakesYd~~lakhHsW~IRtAV 154 (209)
T KOG4189|consen 78 ---TYRTILDLDTEESEVGTIGNQSGTRNLLRLNRALEFVIEFLDQIFASTNDESLKDIAKESYDKTLAKHHSWAIRTAV 154 (209)
T ss_pred ---HHHHHHHHHHHHhHhcccCccccchHHHHHHhhHHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhccccHHHHHHH
Confidence 5555666666666555555 9999999999999999999999998754 679999999999999999999999999
Q ss_pred HHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 025772 189 KVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDML 245 (248)
Q Consensus 189 ~~A~~~lPsR~~fl~~L~~~~e~e~~~~~~m~~~~~~~~pvl~~I~~l~~~~~L~~l 245 (248)
++|||++|+|.+|+..|+ ++.+.+.+.|+.+.....|++.+++.+|..++|.+.
T Consensus 155 ~~amYtLPTR~~lL~~Lk---~d~~~~~~~~~~~~~~~r~ii~~~~~l~~~~~l~~~ 208 (209)
T KOG4189|consen 155 AAAMYTLPTRPELLCRLK---EDMDAANQNMQSYNRDSRPIIRRVDKLYELFELTDD 208 (209)
T ss_pred HHHHHhCCCcHHHHHHHH---hHHHHHHHHHHHHHHccChHHHHHhHHHHHhccccC
Confidence 999999999999999999 566889999999999999999999999999998765
No 4
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=49.28 E-value=5.4 Score=30.70 Aligned_cols=13 Identities=38% Similarity=1.140 Sum_probs=10.4
Q ss_pred HHHhhccccchhH
Q 025772 172 YNIALKPWHGWIS 184 (248)
Q Consensus 172 Y~~tLap~HgW~v 184 (248)
+.-++.|+|||.+
T Consensus 81 fav~~~pfhgw~i 93 (95)
T PF13496_consen 81 FAVMLGPFHGWSI 93 (95)
T ss_pred eEEEecCcccccc
Confidence 3457899999986
No 5
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=39.35 E-value=49 Score=30.99 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh---------------CCcccchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHHH
Q 025772 86 PTMLVLRQDIHQNIQRLEKFCEL---------------DPSKYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMV 150 (248)
Q Consensus 86 ~~F~fv~~Dv~~nI~kL~~~~~~---------------~~~~~~TL~~mv~~E~~~g~~~~~~S~sraLLwL~RaL~Fi~ 150 (248)
..|+|+-+- ++||.+|..+.+. +-+.|-||+.+...|++... ++.+-|-|+ .||.
T Consensus 120 ~lfSFiCSS-NNNIaRIT~Mve~fc~~fG~~i~~~dg~~~h~FPsl~~L~g~~~Ea~L-R~~gfGYRA--------kYI~ 189 (323)
T KOG2875|consen 120 CLFSFICSS-NNNIARITGMVERFCQAFGPRIIQLDGVDYHGFPSLQALAGPEVEAEL-RKLGFGYRA--------KYIS 189 (323)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHhhCcceEeecCcccccCccHHHhcCcHhHHHH-HHcCcchhH--------HHHH
Confidence 346776665 5799999877652 33567789999876666543 445666776 6888
Q ss_pred HHHHHHhcCCCC-c-HHHHHHHHHHH
Q 025772 151 ALLQRLAKDPGQ-K-MEQAVEESYNI 174 (248)
Q Consensus 151 ~fl~~l~~~~~~-s-l~~~a~~AY~~ 174 (248)
.-.+.|.+.++. . +..+....|++
T Consensus 190 ~ta~~l~~~~g~~~wLqsl~~~~yee 215 (323)
T KOG2875|consen 190 ATARALQEKQGGLAWLQSLRKSSYEE 215 (323)
T ss_pred HHHHHHHHhcccchHHHHHhcccHHH
Confidence 888888876654 2 55666666654
No 6
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=39.02 E-value=86 Score=22.10 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025772 187 AFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSI 236 (248)
Q Consensus 187 a~~~A~~~lPsR~~fl~~L~~~~e~e~~~~~~m~~~~~~~~pvl~~I~~l 236 (248)
-..+||+.+|.-+.++.+-|-.= -.+.++-+++.+..|+..-+++
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeL-----sme~~qP~m~L~~~VM~eAYEl 50 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIEL-----SMEMLQPLMQLLTKVMNEAYEL 50 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccC-----CHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999988876431 2355777777777777766553
No 7
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=31.16 E-value=1e+02 Score=27.39 Aligned_cols=53 Identities=11% Similarity=0.228 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhH-HHHHHHH
Q 025772 35 SSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTML-VLRQDIH 96 (248)
Q Consensus 35 ~~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lfd~LG~~F~-fv~~Dv~ 96 (248)
-..+|..||..||..+-+++ ...-..+..|-...-..|+-+|..|+ --+.|+.
T Consensus 49 EyqkiG~af~~LsqaFe~d~---------~~~s~~L~~Av~~tG~~y~~IG~~faeQpk~D~~ 102 (207)
T cd07669 49 EFQKLGNAFQAISHSFQLDP---------PYSSEALNNAISHTGRTYEAVGEMFAEQPKNDLF 102 (207)
T ss_pred HHHHHHHHHHHHHHHHhcCC---------CccchHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 37899999999999994322 12222788888888888888888773 2345544
No 8
>KOG2427 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.64 E-value=36 Score=33.03 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=36.3
Q ss_pred hccccchhHHHHHHHHhhh--CCChH-------HHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 025772 176 LKPWHGWISSAAFKVALKL--LPDSV-------TFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLK 246 (248)
Q Consensus 176 Lap~HgW~vR~a~~~A~~~--lPsR~-------~fl~~L~~~~e~e~~~~~~m~~~~~~~~pvl~~I~~l~~~~~L~~l~ 246 (248)
..=||||+|-.-.--+..+ .+++. +.....+....+|..- .+...+-....++++--.-+..|||.+|.
T Consensus 133 V~LyHGWlvDpq~~e~~~ai~~~Syn~~~~~~tq~ve~~~~~~~~E~s~--~i~s~~~~~~~f~~~s~tqlt~~Gl~~l~ 210 (391)
T KOG2427|consen 133 VPLYHGWLVDPQDVEIVDAIGNRSYNELETLLTQLVEKQCGCASTENSE--DVLSDCLMLESFLDESATQLTEHGLLRLR 210 (391)
T ss_pred CcceeeeecCCccHHHHHHhcccchhhhhhhHHHHHHHhcccccchhhh--hhhhHHHHHHHhhccchHHHHHhhhhhhh
Confidence 4569999997655444333 34555 6666666543222221 12233333444444555566777776654
No 9
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=27.41 E-value=2.3e+02 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhh
Q 025772 73 LCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCEL 108 (248)
Q Consensus 73 ac~~l~~lfd~LG~~F~fv~~Dv~~nI~kL~~~~~~ 108 (248)
-|+-++.++|.+|..|- -+.=||++++-..|..
T Consensus 49 ~C~yvv~~LdsIGkiFD---is~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 49 DCDYVVETLDSIGKIFD---ISKCGNLKRVIECYAK 81 (161)
T ss_dssp -HHHHHHHHHHHGGGS----GGG-S-THHHHHHHHH
T ss_pred chhHHHHHHHHHhhhcC---chhhcchHHHHHHHHH
Confidence 48999999999999983 1233677776666544
No 10
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=26.87 E-value=1.3e+02 Score=26.75 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=40.5
Q ss_pred hchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhH-HHHHHHHHHHHHH
Q 025772 34 KSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTML-VLRQDIHQNIQRL 102 (248)
Q Consensus 34 ~~~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lfd~LG~~F~-fv~~Dv~~nI~kL 102 (248)
|-+.+|..||..||..+-+++ ..-++ ++.+|-...-..|+-+|..|+ --+.|+.-=.+.|
T Consensus 48 kEyqkiG~af~~LsqaFe~d~--------~~~~~-~L~~Ai~~tg~~y~~IG~~faeQpk~Dl~pl~d~L 108 (210)
T cd07668 48 KEYQKIGKALQSLATVFSTSG--------YQGET-DLNDAITEAGKTYEEIASLVAEQPKKDLHFLMETN 108 (210)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--------cccch-HHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 337899999999999995332 22233 588888888888888888773 2455655333333
No 11
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.48 E-value=5.1e+02 Score=23.83 Aligned_cols=92 Identities=15% Similarity=0.238 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHH
Q 025772 70 FLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFM 149 (248)
Q Consensus 70 FL~ac~~l~~lfd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~~~~S~sraLLwL~RaL~Fi 149 (248)
...+...+..++|.+--.+.++-..+...++.|++.....+.+ ..++.+...+ +.++.++|+|.=.
T Consensus 134 ~~~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~-~~l~~l~~l~-------------~~l~~lr~~l~~~ 199 (322)
T COG0598 134 TRGADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN-EELERLGELR-------------RSLVYLRRALAPL 199 (322)
T ss_pred cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHHH-------------HHHHHHHHHHHhH
Confidence 3345555667888888889999999999999999777655544 4555555543 4678999999998
Q ss_pred HHHHHHHhcCCC----CcHHHHHHHHHHHh
Q 025772 150 VALLQRLAKDPG----QKMEQAVEESYNIA 175 (248)
Q Consensus 150 ~~fl~~l~~~~~----~sl~~~a~~AY~~t 175 (248)
...+..+...+. +..+.-.++.|+.+
T Consensus 200 ~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~ 229 (322)
T COG0598 200 RDVLLRLARRPLDWLSEEDREYLRDVLDHL 229 (322)
T ss_pred HHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 888888877653 23444555555443
No 12
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.02 E-value=1.5e+02 Score=26.42 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhH-HHHHHHHHHHHHH
Q 025772 36 SSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTML-VLRQDIHQNIQRL 102 (248)
Q Consensus 36 ~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lfd~LG~~F~-fv~~Dv~~nI~kL 102 (248)
..+|..||..||.++-+++ ..- ..++-.|....-..|+-+|..|. --++|+.-=.+.|
T Consensus 50 yqkiG~af~~LsqaF~~d~--------~~~-s~~L~~Av~~tg~~y~~IG~~faeQpk~Dl~Pl~d~L 108 (207)
T cd07670 50 YQKVGQSFKGLSQAFELDQ--------QAF-SAGLNQAIAFTGEAYEAIGELFAEQPRQDLDPVMDLL 108 (207)
T ss_pred HHHHHHHHHHHHHHHccCC--------ccc-chHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 7899999999999995332 122 22888888888899999998873 3456655444433
No 13
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=25.63 E-value=4.5e+02 Score=22.91 Aligned_cols=78 Identities=15% Similarity=0.313 Sum_probs=45.6
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhccccchhHHHHHHHHhhhCCC----hHHHHHHHccCCC
Q 025772 135 CSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPD----SVTFMNILMAKDE 210 (248)
Q Consensus 135 ~sraLLwL~RaL~Fi~~fl~~l~~~~~~sl~~~a~~AY~~tLap~HgW~vR~a~~~A~~~lPs----R~~fl~~L~~~~e 210 (248)
-..++||++-+ ...=+-++..+++...++-.+| -+.+..+.-+|+ |..|++.|.
T Consensus 70 l~Es~LRm~~~----~d~ney~v~r~E~~fqeLn~ka--------------~aLk~iLSriPdEinDR~~FLeTIK---- 127 (207)
T KOG4025|consen 70 LQESYLRMHDT----SDTNEYIVSRYEQDFQELNKKA--------------IALKRILSRIPDEINDRHAFLETIK---- 127 (207)
T ss_pred hHHHHHHhhcc----cchhhHhhcCCCccHHHHHHHH--------------HHHHHHHHhCcHhhhhHHHHHHHHH----
Confidence 35667777742 2222345555666677777776 455666666774 566666653
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 025772 211 TYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDM 244 (248)
Q Consensus 211 ~e~~~~~~m~~~~~~~~pvl~~I~~l~~~~~L~~ 244 (248)
...++...+++.|+++|....+..
T Consensus 128 ----------~IASaIKkLLd~vN~v~~~~p~t~ 151 (207)
T KOG4025|consen 128 ----------LIASAIKKLLDAVNAVYRIVPLTA 151 (207)
T ss_pred ----------HHHHHHHHHHHHHHHHHhhccccc
Confidence 334445555667777776665543
No 14
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=24.67 E-value=1.3e+02 Score=31.11 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHHHHhhh--cchhHHHHHHHH-HHHHHHHHHHhhCCcccchHHHHHHHHHHcCCC-CCCCcchhHHHH
Q 025772 66 PTKPFLHLCNLVLQVLDKI--GPTMLVLRQDIH-QNIQRLEKFCELDPSKYANVVEILKKEASEGNA-RKKTSCSKAFLW 141 (248)
Q Consensus 66 ~t~~FL~ac~~l~~lfd~L--G~~F~fv~~Dv~-~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~-~~~~S~sraLLw 141 (248)
....|++|.+.|..|==.+ |..|.|+.-.+. ..++.|....+.||+.|..++.+++-=..-+.. ....++......
T Consensus 515 ~~~~Li~a~~~Ls~f~l~l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~~~~~~~~~~~~~~~~ 594 (715)
T PF08314_consen 515 REKDLIKATHALSEFSLVLQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLVLAGSDESSESDDEAA 594 (715)
T ss_dssp HHHHHHHHHHHHTTS-----------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHHHH-----TT---SST
T ss_pred HHHHHHHHHHHHHhCCeecCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHHHHhcccccccchHHH
Confidence 3566666666654332223 446888776554 378888899999999999998887665443322 111111111111
Q ss_pred HHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh---hcc---------ccchhHHHHHHHHhhhCCChH
Q 025772 142 LTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIA---LKP---------WHGWISSAAFKVALKLLPDSV 199 (248)
Q Consensus 142 L~RaL~Fi~~fl~~l~~~~~~sl~~~a~~AY~~t---Lap---------~HgW~vR~a~~~A~~~lPsR~ 199 (248)
-.|- +..+.+.-+.+.+ +.-||..+ |.+ -|+|.=+.++.+|=+--|+..
T Consensus 595 ~~ri---~~~~i~~AL~~~D------f~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~~~p~~~ 655 (715)
T PF08314_consen 595 ERRI---LSMCIEAALVEDD------FETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKYRSPEWF 655 (715)
T ss_dssp HHHH---HHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---TTSG
T ss_pred HHHH---HHHHHHHHHHcCC------HHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCCCCCCcc
Confidence 2222 2334444444333 34444444 444 588999999999988776653
No 15
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=23.76 E-value=4.3e+02 Score=22.03 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhccccchhHHHHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHH
Q 025772 145 SLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTS 224 (248)
Q Consensus 145 aL~Fi~~fl~~l~~~~~~sl~~~a~~AY~~tLap~HgW~vR~a~~~A~~~lPsR~~fl~~L~~~~e~e~~~~~~m~~~~~ 224 (248)
-|+|+..-|++. .-|- ..-..+-.||++.+..|-.=+--.--..|-+-.|.-=+++..|.-. -.-++++++..
T Consensus 48 ~ld~lr~rL~~a-~LP~-k~iksal~aYe~AC~RWr~~l~e~F~~tA~svsP~Nlhll~~LR~r-----lyt~QVekW~~ 120 (147)
T PF04611_consen 48 DLDGLRTRLQEA-KLPP-KAIKSALSAYEKACARWRSDLEESFDITAKSVSPHNLHLLNQLRFR-----LYTQQVEKWLW 120 (147)
T ss_pred cHHHHHHHHHHc-CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH-----HHHHHHHHHHH
Confidence 367777777765 2233 3456688999999999877666655667778889999999988743 24567788877
Q ss_pred HHHHHHHHHHHHHHH
Q 025772 225 LLVPFLEEIHSILRL 239 (248)
Q Consensus 225 ~~~pvl~~I~~l~~~ 239 (248)
.+..+=+++..-+++
T Consensus 121 qVLqvpe~W~aEMeK 135 (147)
T PF04611_consen 121 QVLQVPERWRAEMEK 135 (147)
T ss_pred HHHHhHHHHHHHHHH
Confidence 777777777666654
No 16
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=22.94 E-value=6.3e+02 Score=23.59 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=53.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhhccccchhHHHHHHHHhhhCCChHHHHHHHccC---------CCChHHHHHHHHHHH
Q 025772 153 LQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAK---------DETYDNLKEEMQTLT 223 (248)
Q Consensus 153 l~~l~~~~~~sl~~~a~~AY~~tLap~HgW~vR~a~~~A~~~lPsR~~fl~~L~~~---------~e~e~~~~~~m~~~~ 223 (248)
+..++.+++.+++..+..||.+.+.. |++....++.-.+.. |...-+.+|.. .+..+.+...+..++
T Consensus 39 ~~~~~~~~d~~~Rk~a~~a~~~~~~~-~~~~~~~~l~~lv~~---r~~~A~~~Gy~~~~~~~l~~~~~~~~~~~~l~~v~ 114 (427)
T cd06459 39 LSNLLESPDREVRKKAFEALYKAYEK-YENTLAAILNTLVKL---RLTLAKLRGYDSYLEAALFNNNIPEDVYDFLIAVV 114 (427)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHhcCCCCHHHHhhccCCCCHHHHHHHHHHH
Confidence 34455666777888898888888765 455444444433333 44444444432 223456777788888
Q ss_pred HHHHHHHHHHHHHHHH-cCCC
Q 025772 224 SLLVPFLEEIHSILRL-QGLD 243 (248)
Q Consensus 224 ~~~~pvl~~I~~l~~~-~~L~ 243 (248)
....|++.++.....+ .|++
T Consensus 115 ~~~~p~~~~~~~~~~~~lg~~ 135 (427)
T cd06459 115 KENVPLLHRYLKLKKKLLGLD 135 (427)
T ss_pred HHhcHHHHHHHHHHHHHhCCC
Confidence 8888998888876543 3444
No 17
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=22.84 E-value=1.8e+02 Score=25.45 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchh-HHHHHHHH
Q 025772 36 SSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTM-LVLRQDIH 96 (248)
Q Consensus 36 ~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lfd~LG~~F-~fv~~Dv~ 96 (248)
..+|..||..||..+-+.+. -.-.++..|-..+-..++.+|..| .-.++|..
T Consensus 42 yqk~G~af~~L~~af~~d~~---------~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~ 94 (199)
T cd07626 42 YQKIGQAFTSLGTAFELDET---------PTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLI 94 (199)
T ss_pred HHHHHHHHHHHHHHHccCCC---------ccchHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Confidence 68999999999999943222 223377888888888888888776 33455544
No 18
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=1.9e+02 Score=25.13 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=42.4
Q ss_pred HHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 025772 187 AFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLK 246 (248)
Q Consensus 187 a~~~A~~~lPsR~~fl~~L~~~~e~e~~~~~~m~~~~~~~~pvl~~I~~l~~~~~L~~l~ 246 (248)
.-+++..+||.-+.|=+.|.....+.+ .. ..++..+.-+++.+.++|.++|+...+
T Consensus 85 ~e~~~~dlLpviDnlerAl~~~~~~~d---~~-~~l~~Gvem~~~~l~~~L~k~Gv~~i~ 140 (193)
T COG0576 85 IEKFAKDLLPVIDNLERALEAAEDDKD---PE-KALLEGVEMTLDQLLDALEKLGVEEIG 140 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc---hH-HHHHHHHHHHHHHHHHHHHHCCCEEeC
Confidence 446788899999999999875321111 11 567788889999999999999998665
No 19
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=21.86 E-value=90 Score=23.06 Aligned_cols=40 Identities=13% Similarity=0.417 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHhcCCCCc-HH--HHHHHHHHHhhccccc
Q 025772 142 LTRSLDFMVALLQRLAKDPGQK-ME--QAVEESYNIALKPWHG 181 (248)
Q Consensus 142 L~RaL~Fi~~fl~~l~~~~~~s-l~--~~a~~AY~~tLap~Hg 181 (248)
..++++.+...+.+++..|++. .+ ....+++.+.+.++||
T Consensus 6 ~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g 48 (87)
T PF09409_consen 6 FQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPG 48 (87)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChh
Confidence 4678999999999999988742 33 2366888888999988
No 20
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.59 E-value=2.2e+02 Score=21.04 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchh
Q 025772 38 EIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTM 88 (248)
Q Consensus 38 ~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lfd~LG~~F 88 (248)
.+..++.+|-.+|. +-.++++++..-+..+..-+.+........
T Consensus 6 sfEeal~~LE~Iv~-------~LE~~~l~Leesl~lyeeG~~L~k~C~~~L 49 (76)
T PRK14063 6 SFEEAISQLEHLVS-------KLEQGDVPLEEAISYFKEGMELSKLCDEKL 49 (76)
T ss_pred CHHHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888885 556789999999999999888876654443
No 21
>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function.
Probab=21.02 E-value=29 Score=27.82 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.8
Q ss_pred hccccchhHHH
Q 025772 176 LKPWHGWISSA 186 (248)
Q Consensus 176 Lap~HgW~vR~ 186 (248)
+.-+|||++-.
T Consensus 87 I~LvHGWl~dp 97 (121)
T PF04424_consen 87 IPLVHGWLVDP 97 (121)
T ss_pred CCceeeeccCC
Confidence 67799999853
No 22
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=20.87 E-value=2.9e+02 Score=29.60 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=50.9
Q ss_pred HHHHH-HhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhccccchhHHHHHHHHhhhCCChHHHHHHHc----------
Q 025772 138 AFLWL-TRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILM---------- 206 (248)
Q Consensus 138 aLLwL-~RaL~Fi~~fl~~l~~~~~~sl~~~a~~AY~~tLap~HgW~vR~a~~~A~~~lPsR~~fl~~L~---------- 206 (248)
.++|| +|...++..||.+|..-++.+|. .|+|++++. +=+.|+.|..+++.|.
T Consensus 4 ~FigL~rr~v~~L~~FL~~L~~~~~VDL~-------------~HpkVl~kC---g~~~L~rrt~lyN~LvLWL~Yyr~Lr 67 (839)
T PF06070_consen 4 PFIGLPRRNVVRLTKFLKNLSSRPDVDLE-------------EHPKVLRKC---GGKFLHRRTTLYNELVLWLGYYRELR 67 (839)
T ss_pred ccccCCHHHHHHHHHHHHhcccCCCCChh-------------hCcHHHHhc---CCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 35666 57999999999999887777775 599999988 7788888888777663
Q ss_pred cCCCChHHHHHHHHHHHH
Q 025772 207 AKDETYDNLKEEMQTLTS 224 (248)
Q Consensus 207 ~~~e~e~~~~~~m~~~~~ 224 (248)
....|...+.+.+++++.
T Consensus 68 ~~~PD~s~l~~ef~~~~~ 85 (839)
T PF06070_consen 68 KHRPDYSSLLDEFERLCS 85 (839)
T ss_pred hhCCChHHHHHHHHHHHH
Confidence 233454555555555544
No 23
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=20.58 E-value=2.2e+02 Score=25.16 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhh---------cchhHHHHHHHHHHHHHHHHHH
Q 025772 36 SSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKI---------GPTMLVLRQDIHQNIQRLEKFC 106 (248)
Q Consensus 36 ~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lfd~L---------G~~F~fv~~Dv~~nI~kL~~~~ 106 (248)
.+..+.++++|+.....+ +.+.-.-.+..|..+-+++..+.+.| .|.-+|++.|+.+-..-.++.+
T Consensus 39 ~~~F~~aL~~~g~~~~~~-----~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~f 113 (215)
T cd07604 39 ELQFAEALEKLGSKALSR-----EEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPF 113 (215)
T ss_pred HHHHHHHHHHHhccccCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467788888888655311 10111234677888888888888766 3445888889865223666667
Q ss_pred hhCCcccchHHHHHHHH
Q 025772 107 ELDPSKYANVVEILKKE 123 (248)
Q Consensus 107 ~~~~~~~~TL~~mv~~E 123 (248)
+.....|.+..+-+..+
T Consensus 114 dK~s~~ye~~~~k~~k~ 130 (215)
T cd07604 114 DKAWKDYETKASKIEKE 130 (215)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 66555565554444443
No 24
>PRK14148 heat shock protein GrpE; Provisional
Probab=20.21 E-value=3e+02 Score=24.10 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=43.4
Q ss_pred HHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 025772 186 AAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLK 246 (248)
Q Consensus 186 ~a~~~A~~~lPsR~~fl~~L~~~~e~e~~~~~~m~~~~~~~~pvl~~I~~l~~~~~L~~l~ 246 (248)
..-+++..++|--+.|-+.|.....+ ..+..++..+.-++..+.++|+++|+....
T Consensus 88 a~~~~~~~LLpV~DnlerAl~~~~~~-----~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~ 143 (195)
T PRK14148 88 GIEKFAKELLPVIDSIEQALKHEVKL-----EEAIAMKEGIELTAKMLVDILKKNGVEELD 143 (195)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHCCCEEeC
Confidence 45577888999999999988753211 235668888999999999999999997553
No 25
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.16 E-value=3e+02 Score=24.15 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=34.9
Q ss_pred CCCChHHHHHHHHHHHHHHhhh---------cchhHHHHHHHHHHHHHHHHHHhhCCcccch
Q 025772 63 IHIPTKPFLHLCNLVLQVLDKI---------GPTMLVLRQDIHQNIQRLEKFCELDPSKYAN 115 (248)
Q Consensus 63 ~~I~t~~FL~ac~~l~~lfd~L---------G~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~T 115 (248)
..-.+..|..+-++|...+..| .+.-+|++.|+. .++-.+..++..+..|.+
T Consensus 59 i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~-~vKe~kK~FdK~s~~~d~ 119 (200)
T cd07639 59 MAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLR-GFRDARKEFERGAESLEA 119 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHhhhHhhcchhHHH
Confidence 3455677888888886665544 344578899985 588777777765555443
Done!