Query 025772
Match_columns 248
No_of_seqs 155 out of 421
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:17:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzn_A GLTP, glycolipid transf 100.0 1.4E-54 4.8E-59 378.3 19.7 185 61-245 14-206 (209)
2 2i3f_A Glycolipid transfer-lik 100.0 2.4E-53 8.1E-58 373.9 20.8 190 34-246 10-200 (224)
3 3kv0_A HET-C2; GLTP, glycolipi 100.0 7.5E-53 2.6E-57 367.3 19.6 173 62-242 34-207 (209)
4 2jtt_C Calcyclin-binding prote 49.8 23 0.0008 21.8 3.8 27 149-175 8-34 (35)
5 1hlo_A Protein (transcription 34.4 1.2E+02 0.004 21.2 6.6 29 19-52 12-40 (80)
6 1mdy_A Protein (MYOD BHLH doma 33.0 1.2E+02 0.0041 20.9 7.0 26 21-51 14-39 (68)
7 3k8p_D Protein transport prote 31.4 1.9E+02 0.0065 28.9 9.1 60 66-125 483-552 (709)
8 1a0a_A BHLH, protein (phosphat 29.0 83 0.0028 21.3 4.4 24 25-53 8-31 (63)
9 1nkp_B MAX protein, MYC proto- 26.9 1.6E+02 0.0056 20.5 9.2 47 22-80 5-51 (83)
10 2itb_A TRNA-(MS(2)IO(6)A)-hydr 26.1 1.1E+02 0.0039 25.9 5.6 52 178-243 33-87 (206)
11 2hn1_A CORA, magnesium and cob 25.0 3E+02 0.01 22.9 8.9 83 78-175 175-261 (266)
12 3ubw_A 14-3-3E, 14-3-3 protein 24.2 2.5E+02 0.0087 24.5 7.7 96 68-175 118-229 (261)
13 4h10_A ARYL hydrocarbon recept 23.9 1.7E+02 0.0058 20.4 5.4 51 21-81 11-61 (73)
14 1wy6_A Hypothetical protein ST 21.6 1.6E+02 0.0054 24.1 5.4 32 74-108 55-86 (172)
15 1an4_A Protein (upstream stimu 21.2 1.4E+02 0.0049 19.8 4.5 27 24-55 10-36 (65)
16 3u5v_A Protein MAX, transcript 20.6 55 0.0019 23.2 2.3 24 23-51 9-32 (76)
No 1
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=100.00 E-value=1.4e-54 Score=378.28 Aligned_cols=185 Identities=23% Similarity=0.422 Sum_probs=173.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCC-CCCcchhH
Q 025772 61 PRIHIPTKPFLHLCNLVLQVLDKIGP-TMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNAR-KKTSCSKA 138 (248)
Q Consensus 61 ~~~~I~t~~FL~ac~~l~~lfd~LG~-~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~-~~~S~sra 138 (248)
++++|+|.+||+||++|++|||+||+ +|+||++||.|||++|++++..+|.+|.||++||++|++.|++. ++.||||+
T Consensus 14 ~~~~i~t~~fL~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~~~~~~s~tr~ 93 (209)
T 3rzn_A 14 ADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLA 93 (209)
T ss_dssp TTCCCBHHHHHHHHTTSGGGGGGSSCGGGHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGGGTTSSHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHcCCcccCCchHHHH
Confidence 57889999999999999999999999 89999999999999999999999999999999999999998774 46899999
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHhhccccchhHHHHHHHHhhhCCChHHHHHHHccCC-CCh
Q 025772 139 FLWLTRSLDFMVALLQRLAKDPGQ-----KMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKD-ETY 212 (248)
Q Consensus 139 LLwL~RaL~Fi~~fl~~l~~~~~~-----sl~~~a~~AY~~tLap~HgW~vR~a~~~A~~~lPsR~~fl~~L~~~~-e~e 212 (248)
||||||||+|++.||+++..++++ +++++|++||++||+|||||+||++|++||+++|+|++|+++|+++. .++
T Consensus 94 LLwL~R~L~fi~~~l~~l~~~~~~~~~~~~l~~~~~~AY~~tL~~~H~w~vr~a~~~A~~a~P~R~~fl~~l~~g~~~~e 173 (209)
T 3rzn_A 94 LMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTE 173 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCTTSTTCCHHHHHHHHHHHTGGGSCHHHHHHHHHHGGGCCCHHHHHHHHTTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhCCCHHHHHHHHhcCCCCcH
Confidence 999999999999999999876543 39999999999999999999999999999999999999999997543 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 025772 213 DNLKEEMQTLTSLLVPFLEEIHSILRLQGLDML 245 (248)
Q Consensus 213 ~~~~~~m~~~~~~~~pvl~~I~~l~~~~~L~~l 245 (248)
+++.++|++++.++.+++++|+.+|+++||+.-
T Consensus 174 e~~~~~l~~~l~~l~~iv~~i~~~~~~~~L~~~ 206 (209)
T 3rzn_A 174 EECLEKIRLFLVNYTATIDVIYEMYTQMNAELN 206 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 889999999999999999999999999999864
No 2
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=100.00 E-value=2.4e-53 Score=373.93 Aligned_cols=190 Identities=24% Similarity=0.371 Sum_probs=175.4
Q ss_pred hchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCc-c
Q 025772 34 KSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPS-K 112 (248)
Q Consensus 34 ~~~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lfd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~-~ 112 (248)
-.++++..+|+++... ++++|+|.+||+||++|++|||+||++|+||++||.|||++| +.++|. +
T Consensus 10 f~l~~v~~~F~~~~~~-----------~~~~I~t~~FL~a~~~l~~~fd~LG~~F~~v~~Dv~gnI~kL---~~~~p~~~ 75 (224)
T 2i3f_A 10 EDFGIIVILWKQVTVK-----------EDGKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKL---YRANQTVH 75 (224)
T ss_dssp -CTTHHHHHHHTSCCC-----------TTCCCBHHHHHHHHHHTHHHHHHHCGGGHHHHHHHHHHHHHH---HHHHTTTC
T ss_pred CCHHHHHHHHHHhhcc-----------CCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HhhCccch
Confidence 3477888888876531 246899999999999999999999999999999999999999 666798 9
Q ss_pred cchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhccccchhHHHHHHHHh
Q 025772 113 YANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVAL 192 (248)
Q Consensus 113 ~~TL~~mv~~E~~~g~~~~~~S~sraLLwL~RaL~Fi~~fl~~l~~~~~~sl~~~a~~AY~~tLap~HgW~vR~a~~~A~ 192 (248)
|.||++||.+|+ + +++||||+||||||||+|++.||++++.+++ +++++|++||++||+|||||+||++|++||
T Consensus 76 ~~TL~~mv~~E~-~----k~~S~tr~LLwL~RaL~Fi~~~l~~l~~~~~-~l~~~~~~AY~~tL~~yHgwivr~af~~Am 149 (224)
T 2i3f_A 76 AETLQELIIAEN-S----PDGLATVALLWLKRAFQFIASFLRRLVVTDK-SLEQCVTEAYNCTLRPCHSAVIQKVFWGGV 149 (224)
T ss_dssp CSBHHHHHHHHC-S----TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHTTTGGGSCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH-h----cCCchhHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 999999999999 4 5789999999999999999999999999888 999999999999999999999999999999
Q ss_pred hhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 025772 193 KLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLK 246 (248)
Q Consensus 193 ~~lPsR~~fl~~L~~~~e~e~~~~~~m~~~~~~~~pvl~~I~~l~~~~~L~~l~ 246 (248)
+++|+|++|+++|+.+ ++++.++|++++.++.|++++|+++|+++||+++-
T Consensus 150 ~a~P~R~~fl~~L~~~---~~~~~~~l~~~l~~l~~v~~~i~~ly~~~~L~d~~ 200 (224)
T 2i3f_A 150 KLAPSRERFYRKLHPD---LNIAKAKIEEFLIELHDPLCCIVQFFFQRELEDQC 200 (224)
T ss_dssp TTCCCHHHHHHHHCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HhCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcc
Confidence 9999999999999953 67889999999999999999999999999999874
No 3
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=100.00 E-value=7.5e-53 Score=367.33 Aligned_cols=173 Identities=18% Similarity=0.356 Sum_probs=165.8
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCCCCCcchhHHH
Q 025772 62 RIHIPTKPFLHLCNLVLQVLDKIGP-TMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKAFL 140 (248)
Q Consensus 62 ~~~I~t~~FL~ac~~l~~lfd~LG~-~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~~~~S~sraLL 140 (248)
+++|+|.+||++|++|++|||+||+ +|+||++||.+||++|++++..+|.+|.||++||++|++.| +.||||+||
T Consensus 34 ~~~I~t~~fL~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~----~~S~tr~LL 109 (209)
T 3kv0_A 34 GNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNIQDLVRNELXTX----SHTATEGLL 109 (209)
T ss_dssp TSEEBHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGGCSBHHHHHHHHTCC-----CCHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhHHHHHHHhhcCchhhchHHHHHHHHHHhc----ccchHHHHH
Confidence 6789999999999999999999999 99999999999999999999999999999999999999874 789999999
Q ss_pred HHHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhccccchhHHHHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHH
Q 025772 141 WLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQ 220 (248)
Q Consensus 141 wL~RaL~Fi~~fl~~l~~~~~~sl~~~a~~AY~~tLap~HgW~vR~a~~~A~~~lPsR~~fl~~L~~~~e~e~~~~~~m~ 220 (248)
||||||+|++.||++++ +++++++++|++||++||+|||||+||++|++||+++|+|++|+++|+ ++++++.++|+
T Consensus 110 wL~RaL~fi~~~l~~l~-~~~~~l~~~~~~AY~~tL~~yHgw~vr~af~~A~~a~P~R~~fl~~l~---~~~~~~~~~L~ 185 (209)
T 3kv0_A 110 WLVRGLEFTCIALSXNI-GSTEELADSFRGSYRVTLXPHHSFLVXPIFSAAMSACPYRXDFYAXLG---DDEQXVQEELR 185 (209)
T ss_dssp HHHHHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHTTGGGSCTTTHHHHHHHHHTCCCHHHHHHHHC---SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCcHHHHHHHhC---CCHHHHHHHHH
Confidence 99999999999999999 778899999999999999999999999999999999999999999997 45788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 025772 221 TLTSLLVPFLEEIHSILRLQGL 242 (248)
Q Consensus 221 ~~~~~~~pvl~~I~~l~~~~~L 242 (248)
+++.++.|++++|+++|+++|-
T Consensus 186 ~~l~al~~v~~~i~~~~~~~~~ 207 (209)
T 3kv0_A 186 EYLVALDXIVNILXRFLESXEA 207 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999873
No 4
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=49.80 E-value=23 Score=21.75 Aligned_cols=27 Identities=11% Similarity=0.430 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 025772 149 MVALLQRLAKDPGQKMEQAVEESYNIA 175 (248)
Q Consensus 149 i~~fl~~l~~~~~~sl~~~a~~AY~~t 175 (248)
+-.||++|..+.+++++.+..+||.++
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~eS 34 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 457899999998999999999999764
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.41 E-value=1.2e+02 Score=21.23 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=21.2
Q ss_pred hhhhHHHHHHhhhhhhchHHHHHHHHHHhhhhcc
Q 025772 19 KDTKEVEMKRRREIEKSSSEIRSAIEELSMFIKL 52 (248)
Q Consensus 19 ~~~~~~~m~~~~~~~~~~s~i~~a~eels~~~~~ 52 (248)
+-......+|+| ...|..+|.+|...|+.
T Consensus 12 ~R~~hn~~Er~R-----R~~in~~f~~Lr~lvP~ 40 (80)
T 1hlo_A 12 KRAHHNALERKR-----RDHIKDSFHSLRDSVPS 40 (80)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHSGG
T ss_pred HHHHhhHHHHHH-----HHHHHHHHHHHHHHCcC
Confidence 334445566665 47899999999999973
No 6
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=32.97 E-value=1.2e+02 Score=20.92 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=19.8
Q ss_pred hhHHHHHHhhhhhhchHHHHHHHHHHhhhhc
Q 025772 21 TKEVEMKRRREIEKSSSEIRSAIEELSMFIK 51 (248)
Q Consensus 21 ~~~~~m~~~~~~~~~~s~i~~a~eels~~~~ 51 (248)
.++-..||.| ...|.+||++|-..++
T Consensus 14 ~~aN~rER~R-----~~~iN~af~~LR~~iP 39 (68)
T 1mdy_A 14 KAATMRERRR-----LSKVNEAFETLKRSTS 39 (68)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHTTSC
T ss_pred hHhhHHHHHH-----HHHHHHHHHHHHHhcC
Confidence 3445555554 6789999999999996
No 7
>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Saccharomyces cerevisiae}
Probab=31.37 E-value=1.9e+02 Score=28.91 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHHHh--hhc------chhHHHHH-HHH-HHHHHHHHHHhhCCcccchHHHHHHHHHH
Q 025772 66 PTKPFLHLCNLVLQVLD--KIG------PTMLVLRQ-DIH-QNIQRLEKFCELDPSKYANVVEILKKEAS 125 (248)
Q Consensus 66 ~t~~FL~ac~~l~~lfd--~LG------~~F~fv~~-Dv~-~nI~kL~~~~~~~~~~~~TL~~mv~~E~~ 125 (248)
....|++|++.+..+== .-| ..|+|+.- ++. ..++.|....+.||+.|..++.++.-=..
T Consensus 483 rl~aLL~At~aLS~YsL~L~~G~~~~~~vPFtPv~IR~v~~DPlsLIskVLEqNpkAY~~le~Ll~I~~~ 552 (709)
T 3k8p_D 483 KLEVLLEISDKLSHYSINLNKSHNGARDTAFKPSNILEYRDCPLDIISNLLELNPRLYKDLPTTKSLLFG 552 (709)
T ss_dssp HHHHHHHHHHHHTTSCCCCC---------CCCHHHHHHTTTCTHHHHHHHHHHSTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhceeeccCCCccccCCCCCcHHHHHhcCCHHHHHHHHHHhCcHhhhCHHHHHHHHHH
Confidence 46677888877764311 226 66888766 454 68889999999999999999988665433
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=29.03 E-value=83 Score=21.33 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=18.6
Q ss_pred HHHHhhhhhhchHHHHHHHHHHhhhhccC
Q 025772 25 EMKRRREIEKSSSEIRSAIEELSMFIKLK 53 (248)
Q Consensus 25 ~m~~~~~~~~~~s~i~~a~eels~~~~~~ 53 (248)
.+|++| ...|..+|++|...++.+
T Consensus 8 ~aEr~R-----R~rIn~~~~~L~~LlP~~ 31 (63)
T 1a0a_A 8 HAEQAR-----RNRLAVALHELASLIPAE 31 (63)
T ss_dssp GGTHHH-----HHHHHHHHHHHHHTSCHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHCCCc
Confidence 455554 478999999999999744
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.90 E-value=1.6e+02 Score=20.52 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=29.6
Q ss_pred hHHHHHHhhhhhhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 025772 22 KEVEMKRRREIEKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQV 80 (248)
Q Consensus 22 ~~~~m~~~~~~~~~~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~l 80 (248)
.....+|+| ...|.++|.+|...|+..+ +...+-..-|..+-..+..
T Consensus 5 ~hn~~Er~R-----R~~in~~f~~Lr~lvP~~~-------~~k~sK~~iL~~Ai~YI~~ 51 (83)
T 1nkp_B 5 HHNALERKR-----RDHIKDSFHSLRDSVPSLQ-------GEKASRAQILDKATEYIQY 51 (83)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHTTSGGGT-------TSCCCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHH-----HHHHHHHHHHHHHHCCCCC-------CCCCCHHHHHHHHHHHHHH
Confidence 344556665 4679999999999997332 3345555555554444433
No 10
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=26.06 E-value=1.1e+02 Score=25.85 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=37.9
Q ss_pred cccchhHHHHHHHHhhhC---CChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 025772 178 PWHGWISSAAFKVALKLL---PDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLD 243 (248)
Q Consensus 178 p~HgW~vR~a~~~A~~~l---PsR~~fl~~L~~~~e~e~~~~~~m~~~~~~~~pvl~~I~~l~~~~~L~ 243 (248)
-=|-|-=|||+..||.++ |++.+++.++.. -++++|.=| ++|.+++.++|+.
T Consensus 33 ~DHA~CE~KAA~tAm~Li~rYp~~~~Lv~~m~~------LarEEL~HF--------eqVl~im~~Rgi~ 87 (206)
T 2itb_A 33 IDHKNCEFKAASTALSLIAKYNTHLDLINMMSR------LAREELVHH--------EQVLRLMKRRGVP 87 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH------HHHHHHHHH--------HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHH------HHHHHHHHH--------HHHHHHHHHcCCC
Confidence 347777889999999887 999998888862 345555543 4677778888764
No 11
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=25.00 E-value=3e+02 Score=22.86 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHHHHHHHHHh
Q 025772 78 LQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMVALLQRLA 157 (248)
Q Consensus 78 ~~lfd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~~~~S~sraLLwL~RaL~Fi~~fl~~l~ 157 (248)
..++|.+--.+..+-..+...++.|++..-.++. ..+..+... -+.++.|+|++.=....+..|.
T Consensus 175 ~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~--~~l~~l~~l-------------rr~l~~lrr~l~p~~~vl~~L~ 239 (266)
T 2hn1_A 175 YTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS--TLIGKIHSL-------------KREILAFRNAVWPLRDVLSFFT 239 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCHHHHH-------------HHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666777777788888776543332 455555444 2467888888888888888887
Q ss_pred cCCC----CcHHHHHHHHHHHh
Q 025772 158 KDPG----QKMEQAVEESYNIA 175 (248)
Q Consensus 158 ~~~~----~sl~~~a~~AY~~t 175 (248)
.... +....-.++.|+.+
T Consensus 240 ~~~~~~~~~~~~~~lrDv~dh~ 261 (266)
T 2hn1_A 240 RVEHELIGEEVKVYYRDVYDHA 261 (266)
T ss_dssp HCCCTTSCTTTHHHHHHHHHHH
T ss_pred hcCCccCCHHHHHHHHHHHHHH
Confidence 6432 33455566666654
No 12
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=24.17 E-value=2.5e+02 Score=24.47 Aligned_cols=96 Identities=18% Similarity=0.297 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhhh---------cchhHH-HHHHHHHHHHHHH------HHHhhCCcccchHHHHHHHHHHcCCCCC
Q 025772 68 KPFLHLCNLVLQVLDKI---------GPTMLV-LRQDIHQNIQRLE------KFCELDPSKYANVVEILKKEASEGNARK 131 (248)
Q Consensus 68 ~~FL~ac~~l~~lfd~L---------G~~F~f-v~~Dv~~nI~kL~------~~~~~~~~~~~TL~~mv~~E~~~g~~~~ 131 (248)
..+...|..|+.++|.. ..+|.. .+.|+-.-+.-+. ...+.....|..-.++...+.
T Consensus 118 ~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L------- 190 (261)
T 3ubw_A 118 TELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTEL------- 190 (261)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhC-------
Confidence 34777899999999976 234543 6677764443221 001111122333333333322
Q ss_pred CCcchhHHHHHHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 025772 132 KTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIA 175 (248)
Q Consensus 132 ~~S~sraLLwL~RaL~Fi~~fl~~l~~~~~~sl~~~a~~AY~~t 175 (248)
+.| .=+||-=+|+| .+|+-.++.+|+ .--.+|++|++..
T Consensus 191 --~pT-hPirLGLaLNf-SVFyYEIln~p~-~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 191 --PPT-HPIRLGLALNF-SVFYYEILNSPD-RACRLAKAAFDDA 229 (261)
T ss_dssp --CTT-CHHHHHHHHHH-HHHHHHTSCCHH-HHHHHHHHHHHHH
T ss_pred --CCC-CcHHHHHHHHH-HHHHHHHcCCHH-HHHHHHHHHHHHH
Confidence 112 22889999999 566666766544 2344555555544
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=23.94 E-value=1.7e+02 Score=20.42 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=32.4
Q ss_pred hhHHHHHHhhhhhhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 025772 21 TKEVEMKRRREIEKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVL 81 (248)
Q Consensus 21 ~~~~~m~~~~~~~~~~s~i~~a~eels~~~~~~~~~~~~~~~~~I~t~~FL~ac~~l~~lf 81 (248)
..-..++++| ...|...|++|+..|+.+. +....++=...|+.+-..++-+
T Consensus 11 ~~H~~~ERrR-----R~rIN~~l~eL~~LvP~~~-----~~~~KldKasIL~~tV~ylk~l 61 (73)
T 4h10_A 11 EAHSQIEKRR-----RDKMNSFIDELASLVPTCN-----AMSRKLDKLTVLRMAVQHMKTL 61 (73)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHSHHHH-----TCSSCCCHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHH-----HHHHHHHHHHHHHHccccc-----cccccccHHHHHHHHHHHHHHH
Confidence 3445566665 4679999999999997442 1234566666666655444443
No 14
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=21.63 E-value=1.6e+02 Score=24.08 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhh
Q 025772 74 CNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCEL 108 (248)
Q Consensus 74 c~~l~~lfd~LG~~F~fv~~Dv~~nI~kL~~~~~~ 108 (248)
|+-++.++|.+|..|-. +.=||++++-..|..
T Consensus 55 C~y~v~vLd~IGkiFDi---s~C~NlKrVi~C~~~ 86 (172)
T 1wy6_A 55 CRYMFQVLDKIGSYFDL---DKCQNLKSVVECGVI 86 (172)
T ss_dssp HHHHHHHHHHHGGGSCG---GGCSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhcCc---HhhhcHHHHHHHHHH
Confidence 89999999999999821 122455555554433
No 15
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=21.17 E-value=1.4e+02 Score=19.78 Aligned_cols=27 Identities=33% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHHHHhhhhhhchHHHHHHHHHHhhhhccCCC
Q 025772 24 VEMKRRREIEKSSSEIRSAIEELSMFIKLKPK 55 (248)
Q Consensus 24 ~~m~~~~~~~~~~s~i~~a~eels~~~~~~~~ 55 (248)
..++++| ...|.+.|.+|...|+.+..
T Consensus 10 ~~~Er~R-----R~~in~~~~~L~~lvP~~~~ 36 (65)
T 1an4_A 10 NEVERRR-----RDKINNWIVQLSKIIPDSSM 36 (65)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHSCCCCC
T ss_pred chHHHHH-----HHHHHHHHHHHHHHCcCccc
Confidence 4566665 36799999999999986543
No 16
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=20.63 E-value=55 Score=23.19 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhhchHHHHHHHHHHhhhhc
Q 025772 23 EVEMKRRREIEKSSSEIRSAIEELSMFIK 51 (248)
Q Consensus 23 ~~~m~~~~~~~~~~s~i~~a~eels~~~~ 51 (248)
.-..+|+| ...|.++|++|...|+
T Consensus 9 hN~~ER~R-----r~~IN~~f~~Lr~~vP 32 (76)
T 3u5v_A 9 HNALERKR-----RRDINEAFRELGRMCQ 32 (76)
T ss_dssp CCHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred chHHHhhh-----HHHHHHHHHHHHHHcC
Confidence 34456665 5789999999999997
Done!