Query 025773
Match_columns 248
No_of_seqs 55 out of 57
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 09:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05687 DUF822: Plant protein 99.2 9.8E-12 2.1E-16 105.6 5.2 62 1-66 79-148 (150)
2 PF11914 DUF3432: Domain of un 63.7 17 0.00037 29.8 5.0 13 80-92 86-98 (99)
3 PF05687 DUF822: Plant protein 47.5 17 0.00037 31.8 2.7 27 14-40 84-110 (150)
4 PF10472 CReP_N: eIF2-alpha ph 28.9 24 0.00052 34.8 0.7 24 221-244 139-162 (411)
5 PRK10646 ADP-binding protein; 28.0 22 0.00048 30.4 0.3 23 220-243 105-127 (153)
6 COG0802 Predicted ATPase or ki 27.6 24 0.00052 30.5 0.4 22 221-243 103-124 (149)
7 PF02367 UPF0079: Uncharacteri 25.4 26 0.00057 28.9 0.3 22 220-242 92-113 (123)
8 PF12398 DUF3660: Receptor ser 19.3 58 0.0013 23.1 1.0 8 235-242 32-39 (42)
9 TIGR00150 HI0065_YjeE ATPase, 18.2 47 0.001 27.6 0.4 23 220-243 99-121 (133)
10 PF05570 DUF765: Circovirus pr 16.4 86 0.0019 20.6 1.2 10 123-132 2-11 (29)
No 1
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=99.23 E-value=9.8e-12 Score=105.63 Aligned_cols=62 Identities=65% Similarity=0.985 Sum_probs=54.7
Q ss_pred CCcCCCCCCCCCCcccC--------cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhcccCCCC
Q 025773 1 MDVMGGSASASACSSYQ--------QSPCASYNPSPGSSSFPSPRSSHYTPHANGSADANSLIPWLKNLSSSSS 66 (248)
Q Consensus 1 ~d~~G~s~~~SpcSS~q--------pSP~~SY~~SP~SSSfPSp~~~~~~~~~~~~~~~ssLiPwLknlss~~~ 66 (248)
||++|.++.++|||+|| +||+++|+++|.+|+||||++.|+..+ . +.++|||||||++++++
T Consensus 79 ~~~~g~s~~~sp~ss~~~~~~ss~~~sp~~s~~~s~~ss~~pSp~~~d~~~~--~--~~~~~~p~~~~~~~~~s 148 (150)
T PF05687_consen 79 MEIVGSSASASPCSSYQLSPNSSAFPSPVPSYQPSPSSSSFPSPSSLDSINN--S--SSSSLIPWLKNLSSGSS 148 (150)
T ss_pred ccccccCCCCCCcCCCcCCccccCcCCcccccCCCcCCCCCCCCcccccccc--c--ccccccchhhccccCcC
Confidence 68999999999999998 999999999999999999999996543 2 45899999999987544
No 2
>PF11914 DUF3432: Domain of unknown function (DUF3432); InterPro: IPR021839 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 100 amino acids in length. This domain is found associated with PF00096 from PFAM. This domain has two conserved sequence motifs: YPSPV and PSP.
Probab=63.70 E-value=17 Score=29.81 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=10.0
Q ss_pred CCCccccCCCCCC
Q 025773 80 GGSISAPVTPPLS 92 (248)
Q Consensus 80 ggS~SAPVTPPLS 92 (248)
..+.|+||+-+|+
T Consensus 86 tn~fsspvst~Ls 98 (99)
T PF11914_consen 86 TNSFSSPVSTGLS 98 (99)
T ss_pred cccccccccccCC
Confidence 4467899998885
No 3
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=47.54 E-value=17 Score=31.81 Aligned_cols=27 Identities=59% Similarity=0.882 Sum_probs=23.1
Q ss_pred cccCcCCCCCCCCCCCCCCCCCCCCCC
Q 025773 14 SSYQQSPCASYNPSPGSSSFPSPRSSH 40 (248)
Q Consensus 14 SS~qpSP~~SY~~SP~SSSfPSp~~~~ 40 (248)
+|...+|+.+|+.++.+++|++|..+-
T Consensus 84 ~s~~~sp~ss~~~~~~ss~~~sp~~s~ 110 (150)
T PF05687_consen 84 SSASASPCSSYQLSPNSSAFPSPVPSY 110 (150)
T ss_pred cCCCCCCcCCCcCCccccCcCCccccc
Confidence 466699999999999999999988763
No 4
>PF10472 CReP_N: eIF2-alpha phosphatase phosphorylation constitutive repressor; InterPro: IPR019512 This entry represents the conserved N-terminal domain of the regulatory subunit (15B) of protein phosphatase 1 (also known as CReP, or the constitutive repressor of eIF2alpha phosphorylation). The CReP catalytic subunit functions in the dephosphorylation of eIF2-alpha under basal conditions in the absence of stress. In response to translation inhibition, there is reduced synthesis of the labile CReP that contributes to elevated levels of eIF2-alpha phosphorylation []. The C terminus, family PP1c, is shared with the apoptosis-associated protein Gadd34 and herpes simplex virus [].
Probab=28.91 E-value=24 Score=34.81 Aligned_cols=24 Identities=46% Similarity=0.667 Sum_probs=20.9
Q ss_pred eecCccccccccccCCcceeccCC
Q 025773 221 VKPWEGERIHEECVSDDLELTLGN 244 (248)
Q Consensus 221 VKpWEGERIHE~~g~dDLELTLG~ 244 (248)
--.|-.|.||-.|.+-||||.|..
T Consensus 139 pldWLeeg~hwqcss~dL~L~lka 162 (411)
T PF10472_consen 139 PLDWLEEGIHWQCSSSDLELELKA 162 (411)
T ss_pred chhHHhcccccccCCCcccccccc
Confidence 345999999999999999999973
No 5
>PRK10646 ADP-binding protein; Provisional
Probab=28.01 E-value=22 Score=30.42 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=16.6
Q ss_pred ceecCccccccccccCCcceeccC
Q 025773 220 LVKPWEGERIHEECVSDDLELTLG 243 (248)
Q Consensus 220 ~VKpWEGERIHE~~g~dDLELTLG 243 (248)
.|=-| .|||-+..-.++|++++-
T Consensus 105 ~~IEW-~e~~~~~lp~~~l~i~i~ 127 (153)
T PRK10646 105 CLVEW-PQQGAGVLPDPDVEIHLD 127 (153)
T ss_pred EEEEC-CcchhhcCCcCcEEEEEE
Confidence 36689 899966666677777764
No 6
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=27.56 E-value=24 Score=30.48 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=16.9
Q ss_pred eecCccccccccccCCcceeccC
Q 025773 221 VKPWEGERIHEECVSDDLELTLG 243 (248)
Q Consensus 221 VKpWEGERIHE~~g~dDLELTLG 243 (248)
|--| |||+.+..-..+||+++-
T Consensus 103 lIEW-~e~~~~~lp~~~l~I~i~ 124 (149)
T COG0802 103 LIEW-PERLAELLPDADLEITIT 124 (149)
T ss_pred EEEC-cchhccCCCCceEEEEEE
Confidence 6667 688888767888998874
No 7
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=25.38 E-value=26 Score=28.85 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=13.9
Q ss_pred ceecCccccccccccCCcceecc
Q 025773 220 LVKPWEGERIHEECVSDDLELTL 242 (248)
Q Consensus 220 ~VKpWEGERIHE~~g~dDLELTL 242 (248)
.|=-|= |||-+..-.+.|+++|
T Consensus 92 ~~IEW~-e~~~~~l~~~~l~i~i 113 (123)
T PF02367_consen 92 CVIEWP-ERLKELLPEDRLEIEI 113 (123)
T ss_dssp EEEESG-GGGTTTS---SEEEEE
T ss_pred EEEECc-ccccccCCCCcEEEEE
Confidence 367785 9998865667787775
No 8
>PF12398 DUF3660: Receptor serine/threonine kinase ; InterPro: IPR022126 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF00954 from PFAM, PF01453 from PFAM, PF00069 from PFAM, PF08276 from PFAM. There is a conserved ELPL sequence motif. ; GO: 0004674 protein serine/threonine kinase activity
Probab=19.31 E-value=58 Score=23.11 Aligned_cols=8 Identities=50% Similarity=0.941 Sum_probs=6.2
Q ss_pred CCcceecc
Q 025773 235 SDDLELTL 242 (248)
Q Consensus 235 ~dDLELTL 242 (248)
.|||||.|
T Consensus 32 ~eeLELPL 39 (42)
T PF12398_consen 32 TEELELPL 39 (42)
T ss_pred cceecccc
Confidence 46699987
No 9
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=18.24 E-value=47 Score=27.63 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=17.9
Q ss_pred ceecCccccccccccCCcceeccC
Q 025773 220 LVKPWEGERIHEECVSDDLELTLG 243 (248)
Q Consensus 220 ~VKpWEGERIHE~~g~dDLELTLG 243 (248)
.|.-| +|||-++.-.++|++++-
T Consensus 99 ~~IEW-~e~~~~~lp~~~l~i~i~ 121 (133)
T TIGR00150 99 CLVEW-PEEGLEILPDYDLQIKID 121 (133)
T ss_pred EEEEC-CccccccCCcccEEEEEE
Confidence 47899 999977766778888763
No 10
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=16.42 E-value=86 Score=20.64 Aligned_cols=10 Identities=60% Similarity=0.816 Sum_probs=7.4
Q ss_pred CCCCCCCCCC
Q 025773 123 PSSTPPSPGR 132 (248)
Q Consensus 123 ~~SaP~SP~r 132 (248)
++|+|+||..
T Consensus 2 asstpaspap 11 (29)
T PF05570_consen 2 ASSTPASPAP 11 (29)
T ss_pred CcCCCCCCCc
Confidence 5788888854
Done!