Query 025773
Match_columns 248
No_of_seqs 55 out of 57
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:18:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3goe_A DNA repair protein RAD6 28.3 16 0.00053 28.1 0.6 20 224-243 55-74 (82)
2 1x4q_A U4/U6 small nuclear rib 23.8 7.2 0.00025 29.7 -2.0 18 220-237 17-34 (92)
3 2og4_A PRE-mRNA-splicing facto 8.5 1E+02 0.0035 27.6 0.8 17 226-243 98-114 (254)
4 2ju4_A GMP-PDE gamma, retinal 7.7 1.5E+02 0.005 22.9 1.3 21 199-226 52-72 (87)
5 2h6o_A Major outer envelope gl 6.8 1.4E+02 0.0048 28.6 1.0 18 223-240 201-218 (470)
6 4evx_A Putative phage endolysi 6.0 89 0.003 23.4 -0.7 27 220-247 14-40 (106)
7 3ukx_C Bimax2 peptide; arm rep 5.8 2.6E+02 0.0088 17.4 1.5 14 96-109 5-18 (28)
8 3op3_A M-phase inducer phospha 5.7 1.3E+02 0.0043 25.3 0.0 11 219-229 203-213 (216)
9 2gm2_A Conserved hypothetical 5.6 1.9E+02 0.0064 22.8 0.9 22 218-240 38-59 (132)
10 1fqj_C Retinal ROD rhodopsin-s 5.4 1.8E+02 0.006 19.8 0.6 19 200-225 8-26 (42)
No 1
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=28.34 E-value=16 Score=28.15 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.9
Q ss_pred CccccccccccCCcceeccC
Q 025773 224 WEGERIHEECVSDDLELTLG 243 (248)
Q Consensus 224 WEGERIHE~~g~dDLELTLG 243 (248)
.+||||++..-.+|||+|=|
T Consensus 55 FDGdRLdp~~tp~DlemeD~ 74 (82)
T 3goe_A 55 FEGEWLDPNDQVQSTELEDE 74 (82)
T ss_dssp ETTEECCTTSBGGGSSCCTT
T ss_pred EcCcccCccCChhhhCCcCC
Confidence 36999999988999999854
No 2
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.78 E-value=7.2 Score=29.68 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=16.1
Q ss_pred ceecCccccccccccCCc
Q 025773 220 LVKPWEGERIHEECVSDD 237 (248)
Q Consensus 220 ~VKpWEGERIHE~~g~dD 237 (248)
.+|||-.+||+|..|.+|
T Consensus 17 ~lkpWI~kkv~e~LG~eD 34 (92)
T 1x4q_A 17 ELKPWIEKTVKRVLGFSE 34 (92)
T ss_dssp HHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 589999999999999665
No 3
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=8.48 E-value=1e+02 Score=27.63 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=13.2
Q ss_pred cccccccccCCcceeccC
Q 025773 226 GERIHEECVSDDLELTLG 243 (248)
Q Consensus 226 GERIHE~~g~dDLELTLG 243 (248)
-+-+||.+..+|||+ ||
T Consensus 98 ~~p~~~~~~l~dLe~-LG 114 (254)
T 2og4_A 98 IPDIGDLPDTEGLEL-LG 114 (254)
T ss_dssp CCCCTTSTTCTTCEE-EE
T ss_pred cCccccchhhcCCEe-cc
Confidence 356788888899997 76
No 4
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=7.71 E-value=1.5e+02 Score=22.88 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=16.0
Q ss_pred CCCCcccccccccccccCCCcceecCcc
Q 025773 199 SDVPMSDCIATEFAFGCNATGLVKPWEG 226 (248)
Q Consensus 199 ~~~~~~~g~~~EF~F~s~~~g~VKpWEG 226 (248)
.|++-|+|...|+.. |-|||-
T Consensus 52 ddipgmeglgtditv-------icpwea 72 (87)
T 2ju4_A 52 DDIPGMEGCGTDITV-------ICPWEA 72 (87)
T ss_dssp CSSCSSSSCSHHHHT-------CCTTTT
T ss_pred ccccccccccCCeeE-------Ecchhh
Confidence 367888888888875 669973
No 5
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG MAN BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Probab=6.78 E-value=1.4e+02 Score=28.58 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=14.4
Q ss_pred cCccccccccccCCccee
Q 025773 223 PWEGERIHEECVSDDLEL 240 (248)
Q Consensus 223 pWEGERIHE~~g~dDLEL 240 (248)
---||-|||+|.+||=||
T Consensus 201 Em~gngid~~C~~E~~~i 218 (470)
T 2h6o_A 201 EMLGNEIDIECIMEDGEI 218 (470)
T ss_dssp CBCCTTCCCCCBBSSCCB
T ss_pred eeccCccceEEecCCCcc
Confidence 356899999998887665
No 6
>4evx_A Putative phage endolysin; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MLY MSE; 1.70A {Salmonella enterica subsp}
Probab=6.01 E-value=89 Score=23.45 Aligned_cols=27 Identities=11% Similarity=0.359 Sum_probs=16.8
Q ss_pred ceecCccccccccccCCcceeccCCCCC
Q 025773 220 LVKPWEGERIHEECVSDDLELTLGNSKT 247 (248)
Q Consensus 220 ~VKpWEGERIHE~~g~dDLELTLG~skt 247 (248)
++|-|||-|.+=-..... =+|.|.|.+
T Consensus 14 li~~~EG~~~~~Y~D~~G-~~TIGyGht 40 (106)
T 4evx_A 14 FIXQWQGLSLEXYRDRQG-NWVIGYGHM 40 (106)
T ss_dssp HHHHHSCCEEEEEECTTS-CEEEETTEE
T ss_pred HHHHhhCCccccccCCCC-CeEEEEeec
Confidence 589999998763321111 268777654
No 7
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=5.81 E-value=2.6e+02 Score=17.38 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCcc
Q 025773 96 CRTPRTKNDWDEPT 109 (248)
Q Consensus 96 ~R~p~~k~dW~~~~ 109 (248)
.|..++|..||+..
T Consensus 5 rrrrkrkrewdddd 18 (28)
T 3ukx_C 5 RRRRKRKREWDDDD 18 (28)
T ss_dssp -CCCCCCCCCCCSS
T ss_pred HHHHHhhcccccCC
Confidence 35667788999753
No 8
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=5.75 E-value=1.3e+02 Score=25.27 Aligned_cols=11 Identities=45% Similarity=0.398 Sum_probs=0.0
Q ss_pred cceecCccccc
Q 025773 219 GLVKPWEGERI 229 (248)
Q Consensus 219 g~VKpWEGERI 229 (248)
.+-|.|+|||=
T Consensus 203 ~~~~~~~~~~~ 213 (216)
T 3op3_A 203 SQSKVQEGERQ 213 (216)
T ss_dssp -----------
T ss_pred HHhHhhhhhhh
Confidence 46899999984
No 9
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=5.62 E-value=1.9e+02 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=17.3
Q ss_pred CcceecCccccccccccCCccee
Q 025773 218 TGLVKPWEGERIHEECVSDDLEL 240 (248)
Q Consensus 218 ~g~VKpWEGERIHE~~g~dDLEL 240 (248)
.|.|.+|.-+++|++ ..|||+.
T Consensus 38 ~~~v~~W~~~~~~~l-~~e~l~~ 59 (132)
T 2gm2_A 38 DELVEHWPVPSLGQL-QPAHMDA 59 (132)
T ss_dssp SCEECCCCCSSGGGC-CTTTSHH
T ss_pred CCceeecCCCCcccC-CHHHHHH
Confidence 455699999999988 7777764
No 10
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=5.39 E-value=1.8e+02 Score=19.76 Aligned_cols=19 Identities=32% Similarity=0.826 Sum_probs=13.0
Q ss_pred CCCcccccccccccccCCCcceecCc
Q 025773 200 DVPMSDCIATEFAFGCNATGLVKPWE 225 (248)
Q Consensus 200 ~~~~~~g~~~EF~F~s~~~g~VKpWE 225 (248)
+++-|++...++.. |-|||
T Consensus 8 ~ipGmeglgtD~tV-------iCPWE 26 (42)
T 1fqj_C 8 DIPGMEGLGTDITV-------ICPWE 26 (42)
T ss_dssp CCSCCTTCCHHHHT-------TCGGG
T ss_pred ccccccccCCCeEE-------EcchH
Confidence 56667777667664 56997
Done!