Query 025773
Match_columns 248
No_of_seqs 55 out of 57
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 17:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025773.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025773hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1htwa_ c.37.1.18 (A:) Hypothe 19.1 14 0.001 28.4 0.6 23 220-243 110-132 (158)
2 d1zeta2 e.8.1.7 (A:27-299) DNA 4.8 60 0.0044 25.6 -0.6 17 226-242 252-269 (273)
3 d2p6va1 a.277.1.1 (A:582-678) 4.7 78 0.0057 23.0 0.1 11 50-60 67-77 (97)
4 d2ih2a1 c.66.1.27 (A:21-243) D 4.7 91 0.0066 22.2 0.4 9 221-229 215-223 (223)
5 d2fvta1 c.103.1.1 (A:1-127) Hy 4.6 3.2E+02 0.023 19.2 3.5 21 218-239 39-59 (127)
6 d1mp1a_ a.188.1.1 (A:) Ser/Arg 4.1 44 0.0032 24.7 -1.8 19 219-237 23-41 (111)
7 d2cu2a2 c.68.1.20 (A:1-268) Pu 4.0 1.2E+02 0.0084 23.5 0.6 9 171-179 8-17 (268)
8 d2axti1 f.23.37.1 (I:1-35) Pho 3.7 1.5E+02 0.011 18.0 0.8 12 91-102 24-35 (35)
9 d1ug8a_ d.68.7.1 (A:) Poly(A)- 3.6 85 0.0062 22.3 -0.5 17 227-243 18-35 (87)
10 d1pyya2 d.11.1.1 (A:693-750) P 3.5 1.7E+02 0.012 18.1 0.9 19 223-244 40-58 (58)
No 1
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=19.07 E-value=14 Score=28.40 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=18.7
Q ss_pred ceecCccccccccccCCcceeccC
Q 025773 220 LVKPWEGERIHEECVSDDLELTLG 243 (248)
Q Consensus 220 ~VKpWEGERIHE~~g~dDLELTLG 243 (248)
.|=-| +|||.+..-.++|++++-
T Consensus 110 ~~IEW-pe~~~~~lp~~~l~I~i~ 132 (158)
T d1htwa_ 110 CLIEW-SEKGQGILPEADILVNID 132 (158)
T ss_dssp EEEES-GGGGTTTSCCCSEEEEEE
T ss_pred EEEEC-chhhhhcCCcCcEEEEEE
Confidence 37789 799988777888988875
No 2
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.77 E-value=60 Score=25.57 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.6
Q ss_pred cccccccc-cCCcceecc
Q 025773 226 GERIHEEC-VSDDLELTL 242 (248)
Q Consensus 226 GERIHE~~-g~dDLELTL 242 (248)
|++||+.+ |.|+-+++.
T Consensus 252 g~~l~~~a~G~D~~pV~~ 269 (273)
T d1zeta2 252 AQRIQKLSFGEDNSPVIL 269 (273)
T ss_dssp HHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHcCcCCCCCCC
Confidence 89999997 999988764
No 3
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.71 E-value=78 Score=22.99 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=9.0
Q ss_pred CCCcchhhhhc
Q 025773 50 DANSLIPWLKN 60 (248)
Q Consensus 50 ~~ssLiPwLkn 60 (248)
..-+||||||+
T Consensus 67 pqP~lvPFLK~ 77 (97)
T d2p6va1 67 PQPYLVPFLKR 77 (97)
T ss_dssp CCTTHHHHHHH
T ss_pred CCchhHHHHHH
Confidence 45679999997
No 4
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=4.69 E-value=91 Score=22.24 Aligned_cols=9 Identities=56% Similarity=0.992 Sum_probs=7.1
Q ss_pred eecCccccc
Q 025773 221 VKPWEGERI 229 (248)
Q Consensus 221 VKpWEGERI 229 (248)
-.-||||+|
T Consensus 215 ~~~~~~~~~ 223 (223)
T d2ih2a1 215 YPHWEGEII 223 (223)
T ss_dssp ETTCCSCCC
T ss_pred ccCcCCccC
Confidence 456999987
No 5
>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.56 E-value=3.2e+02 Score=19.18 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=15.9
Q ss_pred CcceecCccccccccccCCcce
Q 025773 218 TGLVKPWEGERIHEECVSDDLE 239 (248)
Q Consensus 218 ~g~VKpWEGERIHE~~g~dDLE 239 (248)
...+.+|..+++||+ ..+||+
T Consensus 39 p~~~~~w~~~~~~~l-~~~~l~ 59 (127)
T d2fvta1 39 PDAVWGWDVTKPEQI-DRYSLQ 59 (127)
T ss_dssp SSCEEEESCCSTTCC-CTTTTH
T ss_pred CCceecCCCCCcccC-CHHHHH
Confidence 456788999999988 666654
No 6
>d1mp1a_ a.188.1.1 (A:) Ser/Arg-related nuclear matrix protein srm160 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.10 E-value=44 Score=24.65 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=16.6
Q ss_pred cceecCccccccccccCCc
Q 025773 219 GLVKPWEGERIHEECVSDD 237 (248)
Q Consensus 219 g~VKpWEGERIHE~~g~dD 237 (248)
..+|||-..||-|..|.||
T Consensus 23 ~~ikpWI~kkI~e~LG~ED 41 (111)
T d1mp1a_ 23 EVIKPWITKRVTEILGFED 41 (111)
T ss_dssp GGGHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHhCcch
Confidence 4699999999999999666
No 7
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}
Probab=4.00 E-value=1.2e+02 Score=23.55 Aligned_cols=9 Identities=33% Similarity=1.103 Sum_probs=7.2
Q ss_pred cC-CCCCCcc
Q 025773 171 LS-GGPSRMW 179 (248)
Q Consensus 171 ~~-g~~srmw 179 (248)
|+ |.|+|||
T Consensus 8 LAGG~GtRL~ 17 (268)
T d2cu2a2 8 MAGGRGERLW 17 (268)
T ss_dssp ECCCCCGGGT
T ss_pred ecCCCcccCC
Confidence 44 7899998
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.69 E-value=1.5e+02 Score=17.96 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCC
Q 025773 91 LSSPTCRTPRTK 102 (248)
Q Consensus 91 LSSPT~R~p~~k 102 (248)
||+-++|+|.+|
T Consensus 24 LSnDP~RnP~rk 35 (35)
T d2axti1 24 LSGDPARNPKRK 35 (35)
T ss_dssp HTTCTTCSSCCC
T ss_pred ccCCCCCCCCCC
Confidence 345556777654
No 9
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.61 E-value=85 Score=22.34 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=11.6
Q ss_pred ccccccccCCcc-eeccC
Q 025773 227 ERIHEECVSDDL-ELTLG 243 (248)
Q Consensus 227 ERIHE~~g~dDL-ELTLG 243 (248)
|||+|-..++|+ ||+|.
T Consensus 18 erIe~fL~see~k~l~le 35 (87)
T d1ug8a_ 18 EKIEDFLQSEEKRSLELD 35 (87)
T ss_dssp HHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHcCcccceeecC
Confidence 688887766554 46665
No 10
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=3.50 E-value=1.7e+02 Score=18.10 Aligned_cols=19 Identities=26% Similarity=0.421 Sum_probs=13.8
Q ss_pred cCccccccccccCCcceeccCC
Q 025773 223 PWEGERIHEECVSDDLELTLGN 244 (248)
Q Consensus 223 pWEGERIHE~~g~dDLELTLG~ 244 (248)
|=.|++|.+- +.++||||+
T Consensus 40 p~~Gt~v~~g---~~I~l~L~~ 58 (58)
T d1pyya2 40 VRANTAIKDI---KKITLTLGD 58 (58)
T ss_dssp SCTTCBGGGC---SEEEEEEEC
T ss_pred CCCCcccCCC---CEEEEEECC
Confidence 5578888654 558899885
Done!