BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025774
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
           Containing Protein 7
          Length = 153

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 2   LNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 61
           LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P V ++DP TGQK+  W
Sbjct: 60  LNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW 119

Query: 62  CGMVQPESLLEDLVPFM 78
              +   S L+ +  F+
Sbjct: 120 -HQLDVSSFLDQVTGFL 135


>pdb|2CR5|A Chain A, Solution Structure Of The Ubx Domain Of D0h8s2298e Protein
          Length = 109

 Score = 37.0 bits (84), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 148 ASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS 207
            S+      P LPEEP      +  V +R P+GR ++R F ++   Q+L  +      G 
Sbjct: 1   GSSGSSGEVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GY 58

Query: 208 EMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 238
               +RL+ + P   ++L+ +   + ED G+
Sbjct: 59  HKSLYRLSTSFP--RRALEVEGGSSLEDIGI 87


>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
           Resolution Of Argininosuccinate Lyase From E. Coli
 pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
           Resolution Of Argininosuccinate Lyase From E. Coli
          Length = 457

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 63  GMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDI 111
           GMV      EDL+ F  G       ++S +   GSS  PQ+KN D  ++
Sbjct: 245 GMVHLSRFAEDLIFFNTG--EAGFVELSDRVTSGSSLMPQKKNPDALEL 291


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,039,637
Number of Sequences: 62578
Number of extensions: 268357
Number of successful extensions: 520
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 3
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)