Query 025774
Match_columns 248
No_of_seqs 167 out of 1012
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cr5_A Reproduction 8; UBX dom 99.9 8.9E-24 3E-28 159.4 11.8 86 156-245 9-94 (109)
2 1s3s_G P47 protein; AAA ATPase 99.8 3.9E-21 1.3E-25 148.6 8.5 79 167-248 49-127 (127)
3 3qx1_A FAS-associated factor 1 99.8 1.3E-20 4.3E-25 135.6 10.4 76 167-245 4-79 (84)
4 2dzk_A UBX domain-containing p 99.8 2E-20 6.8E-25 140.9 11.1 84 163-248 6-90 (109)
5 1wj4_A KIAA0794 protein; UBX d 99.8 2.2E-19 7.6E-24 138.1 10.3 82 162-247 35-118 (124)
6 2ec4_A FAS-associated factor 1 99.7 7.9E-18 2.7E-22 137.4 8.0 81 1-81 72-170 (178)
7 2dlx_A UBX domain-containing p 99.5 5.7E-14 2E-18 111.8 8.3 81 1-82 59-139 (153)
8 2kzr_A Ubiquitin thioesterase 98.7 3.7E-08 1.3E-12 70.3 6.5 72 172-245 2-74 (86)
9 2lst_A Thioredoxin; structural 97.1 2.2E-06 7.7E-11 64.4 0.0 76 6-81 41-118 (130)
10 2kuc_A Putative disulphide-iso 97.7 0.00021 7.3E-09 53.2 9.1 71 9-80 52-122 (130)
11 1ttn_A DC-UBP, dendritic cell- 97.6 0.00029 9.9E-09 51.8 8.1 80 161-247 14-94 (106)
12 2pjh_A Protein NPL4, nuclear p 97.6 8E-05 2.7E-09 52.2 4.6 73 171-246 5-78 (80)
13 2ju5_A Thioredoxin disulfide i 97.5 0.00053 1.8E-08 53.2 9.3 71 7-79 71-152 (154)
14 3f9u_A Putative exported cytoc 97.4 0.00031 1.1E-08 55.2 6.6 76 5-81 68-168 (172)
15 1wju_A NEDD8 ultimate buster-1 97.4 0.00086 2.9E-08 48.9 8.3 71 168-245 13-88 (100)
16 3v6c_B Ubiquitin; structural g 97.4 0.0018 6.3E-08 45.9 9.7 72 168-246 15-87 (91)
17 1ndd_A NEDD8, protein (ubiquit 97.3 0.0017 5.8E-08 43.9 8.7 68 172-246 2-70 (76)
18 2dzi_A Ubiquitin-like protein 97.3 0.0026 8.8E-08 43.7 9.6 72 168-246 5-77 (81)
19 4dwf_A HLA-B-associated transc 97.3 0.0023 7.9E-08 45.1 9.4 72 168-246 3-74 (90)
20 2fwh_A Thiol:disulfide interch 97.2 0.0013 4.3E-08 49.6 8.2 69 7-77 54-126 (134)
21 3a9j_A Ubiquitin; protein comp 97.2 0.0025 8.7E-08 43.0 8.6 69 172-247 2-71 (76)
22 3mtn_B UBA80, ubcep1, ubiquiti 97.2 0.0025 8.4E-08 44.1 8.6 70 170-246 3-73 (85)
23 2wyq_A HHR23A, UV excision rep 97.2 0.0035 1.2E-07 43.5 9.4 72 169-246 4-78 (85)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 97.1 0.0031 1E-07 44.1 8.9 72 168-246 5-77 (87)
25 1uel_A HHR23B, UV excision rep 97.1 0.0035 1.2E-07 44.8 9.2 69 172-246 2-73 (95)
26 3dbh_I NEDD8; cell cycle, acti 97.1 0.0036 1.2E-07 43.7 9.0 71 168-245 10-81 (88)
27 3phx_B Ubiquitin-like protein 97.1 0.005 1.7E-07 42.1 9.3 70 170-246 4-74 (79)
28 2bwf_A Ubiquitin-like protein 97.1 0.0037 1.3E-07 42.4 8.5 68 171-246 5-73 (77)
29 1yx5_B Ubiquitin; proteasome, 97.1 0.0035 1.2E-07 45.0 8.7 68 172-246 2-70 (98)
30 1wjn_A Tubulin-folding protein 97.0 0.0042 1.4E-07 44.6 9.0 78 168-247 7-91 (97)
31 2hj8_A Interferon-induced 17 k 97.0 0.004 1.4E-07 43.8 8.7 70 170-246 4-74 (88)
32 1uh6_A Ubiquitin-like 5; beta- 97.0 0.0035 1.2E-07 45.6 8.4 74 167-247 25-99 (100)
33 1wyw_B Ubiquitin-like protein 97.0 0.0034 1.2E-07 45.1 8.2 72 168-246 19-91 (97)
34 4eew_A Large proline-rich prot 97.0 0.0056 1.9E-07 42.9 8.9 72 168-246 15-86 (88)
35 4hcn_B Polyubiquitin, ubiquiti 96.9 0.0041 1.4E-07 44.7 8.0 72 168-246 20-92 (98)
36 2l57_A Uncharacterized protein 96.9 0.0085 2.9E-07 44.1 10.0 62 18-80 57-118 (126)
37 3k9o_B Ubiquitin, UBB+1; E2-25 96.8 0.0077 2.6E-07 42.8 8.5 69 171-246 2-71 (96)
38 3n3k_B Ubiquitin; hydrolase, p 96.8 0.0055 1.9E-07 42.3 7.5 70 170-246 3-73 (85)
39 3gnj_A Thioredoxin domain prot 96.8 0.0089 3E-07 42.6 8.8 60 16-79 51-110 (111)
40 2faz_A Ubiquitin-like containi 96.7 0.0096 3.3E-07 40.5 8.4 71 170-247 2-75 (78)
41 1thx_A Thioredoxin, thioredoxi 96.7 0.0099 3.4E-07 42.6 8.8 60 16-79 54-113 (115)
42 1wx7_A Ubiquilin 3; ubiquitin- 96.7 0.016 5.3E-07 42.2 9.8 72 167-246 14-86 (106)
43 1j8c_A Ubiquitin-like protein 96.7 0.019 6.5E-07 43.3 10.5 72 167-246 29-101 (125)
44 2i4a_A Thioredoxin; acidophIle 96.7 0.011 3.8E-07 41.7 8.6 58 16-77 49-106 (107)
45 2ojr_A Ubiquitin; lanthide-bin 96.6 0.015 5.2E-07 42.7 9.5 71 169-246 34-105 (111)
46 2uyz_B Small ubiquitin-related 96.6 0.01 3.5E-07 40.5 8.0 70 170-246 3-73 (79)
47 1we6_A Splicing factor, putati 96.6 0.016 5.5E-07 42.6 9.4 71 169-246 26-101 (111)
48 2qsi_A Putative hydrogenase ex 96.6 0.0084 2.9E-07 46.1 8.0 58 19-80 67-124 (137)
49 3tco_A Thioredoxin (TRXA-1); d 96.6 0.0091 3.1E-07 42.2 7.8 58 17-78 51-108 (109)
50 2trx_A Thioredoxin; electron t 96.6 0.011 3.9E-07 41.9 8.3 59 16-78 49-107 (108)
51 2voc_A Thioredoxin; electron t 96.6 0.011 3.7E-07 42.7 8.2 63 14-80 44-106 (112)
52 3plu_A Ubiquitin-like modifier 96.6 0.017 6E-07 41.3 8.9 71 168-245 19-90 (93)
53 2yzu_A Thioredoxin; redox prot 96.6 0.013 4.5E-07 41.3 8.5 59 17-79 48-106 (109)
54 1nsw_A Thioredoxin, TRX; therm 96.6 0.01 3.5E-07 41.9 7.8 58 17-78 47-104 (105)
55 1wy8_A NP95-like ring finger p 96.6 0.023 7.9E-07 39.6 9.5 72 168-246 5-79 (89)
56 4fbj_B NEDD8; effector-HOST ta 96.5 0.013 4.3E-07 41.2 8.1 68 172-246 2-70 (88)
57 2kc2_A Talin-1, F1; FERM, adhe 96.5 0.017 5.8E-07 43.8 9.1 77 172-248 13-122 (128)
58 1w4v_A Thioredoxin, mitochondr 96.5 0.015 5.2E-07 42.4 8.8 57 18-78 62-118 (119)
59 1wia_A Hypothetical ubiquitin- 96.5 0.011 3.8E-07 42.0 7.8 70 168-246 5-75 (95)
60 4a20_A Ubiquitin-like protein 96.5 0.016 5.3E-07 41.9 8.5 74 167-246 16-93 (98)
61 1oaz_A Thioredoxin 1; immune s 96.5 0.0034 1.2E-07 46.7 5.2 58 16-77 64-121 (123)
62 3fk8_A Disulphide isomerase; A 96.5 0.0067 2.3E-07 45.1 6.8 69 7-76 51-130 (133)
63 3ul3_B Thioredoxin, thioredoxi 96.5 0.013 4.5E-07 43.4 8.4 60 13-76 68-127 (128)
64 3vdz_A Ubiquitin-40S ribosomal 96.5 0.015 5E-07 42.9 8.5 71 169-246 34-105 (111)
65 1wx8_A Riken cDNA 4931431F19; 96.5 0.01 3.5E-07 42.3 7.4 71 167-245 14-85 (96)
66 1dby_A Chloroplast thioredoxin 96.5 0.017 5.7E-07 40.9 8.6 58 17-78 49-106 (107)
67 2kan_A Uncharacterized protein 96.5 0.019 6.5E-07 40.9 8.7 72 168-246 13-85 (94)
68 2klc_A Ubiquilin-1; ubiquitin- 96.4 0.024 8.3E-07 40.9 9.3 70 169-246 24-94 (101)
69 1sif_A Ubiquitin; hydrophobic 96.4 0.017 5.8E-07 40.5 8.2 69 171-246 10-79 (88)
70 4euy_A Uncharacterized protein 96.4 0.013 4.3E-07 41.8 7.6 64 11-78 39-104 (105)
71 1t00_A Thioredoxin, TRX; redox 96.4 0.018 6.2E-07 41.1 8.4 58 18-79 54-111 (112)
72 1v98_A Thioredoxin; oxidoreduc 96.4 0.023 7.9E-07 42.6 9.3 58 18-79 81-138 (140)
73 3p2a_A Thioredoxin 2, putative 96.4 0.022 7.4E-07 43.2 9.1 61 17-81 85-145 (148)
74 3ira_A Conserved protein; meth 96.3 0.006 2E-07 48.8 5.9 74 4-80 59-145 (173)
75 2o8v_B Thioredoxin 1; disulfid 96.3 0.011 3.7E-07 44.2 7.0 59 16-78 69-127 (128)
76 1we7_A SF3A1 protein; structur 96.3 0.024 8.2E-07 41.9 8.7 71 169-246 24-105 (115)
77 1fb6_A Thioredoxin M; electron 96.3 0.021 7.2E-07 40.0 8.1 58 16-77 47-104 (105)
78 3die_A Thioredoxin, TRX; elect 96.3 0.027 9.3E-07 39.5 8.8 58 16-77 48-105 (106)
79 2lxa_A Ubiquitin-like protein 96.3 0.019 6.4E-07 40.5 7.5 71 171-247 2-76 (87)
80 2d07_B Ubiquitin-like protein 96.3 0.032 1.1E-06 39.7 8.9 73 168-247 15-88 (93)
81 2kdb_A Homocysteine-responsive 96.3 0.014 4.7E-07 42.3 7.0 72 168-245 21-98 (99)
82 1yqb_A Ubiquilin 3; structural 96.3 0.027 9.2E-07 40.6 8.6 71 168-246 20-91 (100)
83 3m62_B UV excision repair prot 96.2 0.017 5.7E-07 42.2 7.4 69 171-246 2-71 (106)
84 3hxs_A Thioredoxin, TRXP; elec 96.2 0.024 8.3E-07 42.4 8.7 60 16-79 80-139 (141)
85 2qgv_A Hydrogenase-1 operon pr 96.2 0.011 3.9E-07 45.5 6.6 57 20-80 70-126 (140)
86 2kjr_A CG11242; UBL, ubiquitin 96.2 0.034 1.2E-06 39.8 8.7 76 168-245 13-92 (95)
87 3u30_A Ubiquitin, linear DI-ub 96.2 0.023 7.9E-07 44.9 8.6 73 167-246 17-90 (172)
88 2e0q_A Thioredoxin; electron t 96.2 0.034 1.2E-06 38.6 8.6 56 20-79 48-103 (104)
89 3hz4_A Thioredoxin; NYSGXRC, P 96.1 0.02 6.9E-07 43.2 7.8 64 13-80 50-113 (140)
90 1wz0_A Ubiquitin-like protein 96.1 0.062 2.1E-06 39.2 9.8 72 168-246 22-94 (104)
91 2ppt_A Thioredoxin-2; thiredox 96.1 0.031 1.1E-06 43.2 8.7 60 16-79 93-152 (155)
92 3ph9_A Anterior gradient prote 96.1 0.0028 9.7E-08 49.5 2.7 72 6-81 66-147 (151)
93 2l5l_A Thioredoxin; structural 96.1 0.053 1.8E-06 40.5 9.8 61 17-81 68-128 (136)
94 1x5d_A Protein disulfide-isome 96.0 0.039 1.3E-06 40.6 8.9 59 18-80 60-118 (133)
95 2b5x_A YKUV protein, TRXY; thi 96.0 0.026 8.9E-07 42.0 8.0 47 33-80 100-146 (148)
96 3b08_A Polyubiquitin-C, ubiqui 96.0 0.037 1.3E-06 42.3 8.9 70 170-246 76-146 (152)
97 2gow_A HCG-1 protein, ubiquiti 96.0 0.042 1.4E-06 41.5 8.8 71 163-239 10-87 (125)
98 1v2y_A 3300001G02RIK protein; 96.0 0.023 7.9E-07 41.6 7.1 72 169-246 6-93 (105)
99 2kdi_A Ubiquitin, vacuolar pro 95.9 0.044 1.5E-06 40.5 8.6 71 169-246 8-79 (114)
100 2es7_A Q8ZP25_salty, putative 95.9 0.018 6.3E-07 44.1 6.7 66 11-80 57-126 (142)
101 2eke_C Ubiquitin-like protein 95.9 0.076 2.6E-06 38.9 9.6 72 167-246 28-100 (106)
102 3eyt_A Uncharacterized protein 95.9 0.0088 3E-07 45.6 4.9 46 34-80 108-153 (158)
103 2io1_B Small ubiquitin-related 95.9 0.053 1.8E-06 38.7 8.6 73 168-247 5-78 (94)
104 1v86_A DNA segment, CHR 7, way 95.9 0.038 1.3E-06 39.4 7.8 69 168-245 15-84 (95)
105 2io0_B Small ubiquitin-related 95.9 0.072 2.5E-06 37.8 9.2 71 169-246 4-75 (91)
106 1wxv_A BAG-family molecular ch 95.8 0.068 2.3E-06 37.6 9.0 71 169-246 6-82 (92)
107 3qfa_C Thioredoxin; protein-pr 95.8 0.06 2E-06 39.0 9.0 54 19-77 62-115 (116)
108 3raz_A Thioredoxin-related pro 95.8 0.041 1.4E-06 41.6 8.4 49 32-81 92-142 (151)
109 3dml_A Putative uncharacterize 95.8 0.0063 2.1E-07 45.5 3.5 60 20-81 53-112 (116)
110 3b08_A Polyubiquitin-C, ubiqui 95.8 0.049 1.7E-06 41.6 8.8 68 172-246 2-70 (152)
111 2dml_A Protein disulfide-isome 95.8 0.039 1.3E-06 40.5 8.0 63 16-81 64-126 (130)
112 1se9_A Ubiquitin family; ubiqu 95.8 0.098 3.4E-06 39.5 10.0 66 169-240 15-87 (126)
113 1ep7_A Thioredoxin CH1, H-type 95.8 0.041 1.4E-06 39.1 7.8 56 18-78 55-110 (112)
114 1xwb_A Thioredoxin; dimerizati 95.8 0.064 2.2E-06 37.5 8.7 55 18-77 51-105 (106)
115 1wgd_A Homocysteine-responsive 95.8 0.061 2.1E-06 37.9 8.5 72 169-246 6-83 (93)
116 2i1u_A Thioredoxin, TRX, MPT46 95.8 0.042 1.4E-06 39.7 7.8 58 17-78 60-117 (121)
117 2f9s_A Thiol-disulfide oxidore 95.7 0.053 1.8E-06 40.8 8.5 47 34-81 94-140 (151)
118 2kk8_A Uncharacterized protein 95.7 0.055 1.9E-06 37.6 7.9 70 170-246 10-81 (84)
119 3zzx_A Thioredoxin; oxidoreduc 95.7 0.052 1.8E-06 39.2 8.0 51 19-74 51-101 (105)
120 1lu4_A Soluble secreted antige 95.7 0.042 1.4E-06 40.2 7.6 44 33-78 89-135 (136)
121 2dj1_A Protein disulfide-isome 95.6 0.057 1.9E-06 40.2 8.4 57 20-81 70-126 (140)
122 2k8h_A Small ubiquitin protein 95.6 0.065 2.2E-06 39.5 8.4 72 168-246 24-96 (110)
123 2kd0_A LRR repeats and ubiquit 95.6 0.062 2.1E-06 37.4 8.0 67 171-245 13-80 (85)
124 3ia1_A THIO-disulfide isomeras 95.6 0.033 1.1E-06 42.1 7.1 49 31-80 97-145 (154)
125 1zzo_A RV1677; thioredoxin fol 95.6 0.043 1.5E-06 40.0 7.4 45 33-79 91-135 (136)
126 2ggt_A SCO1 protein homolog, m 95.6 0.08 2.7E-06 40.3 9.1 48 33-81 101-163 (164)
127 2lja_A Putative thiol-disulfid 95.5 0.07 2.4E-06 40.1 8.6 62 19-81 63-145 (152)
128 3rt3_B Ubiquitin-like protein 95.5 0.076 2.6E-06 41.1 9.0 69 171-245 3-73 (159)
129 1r26_A Thioredoxin; redox-acti 95.5 0.082 2.8E-06 39.1 8.7 56 19-79 68-123 (125)
130 1wgh_A Ubiquitin-like 3, HCG-1 95.5 0.12 4.1E-06 38.4 9.5 66 168-239 14-86 (116)
131 2l6c_A Thioredoxin; oxidoreduc 95.5 0.057 1.9E-06 38.7 7.6 57 19-79 50-106 (110)
132 2h30_A Thioredoxin, peptide me 95.5 0.02 7E-07 43.7 5.5 47 33-80 111-157 (164)
133 3rt3_B Ubiquitin-like protein 95.5 0.099 3.4E-06 40.5 9.5 70 170-246 81-151 (159)
134 3a4r_A Nfatc2-interacting prot 95.5 0.14 4.8E-06 35.1 9.2 71 168-245 5-77 (79)
135 1syr_A Thioredoxin; SGPP, stru 95.5 0.081 2.8E-06 37.8 8.4 54 19-77 57-110 (112)
136 1v5o_A 1700011N24RIK protein; 95.5 0.056 1.9E-06 38.9 7.5 72 169-246 6-82 (102)
137 3uvt_A Thioredoxin domain-cont 95.5 0.11 3.7E-06 36.6 9.0 54 19-76 56-109 (111)
138 1xfl_A Thioredoxin H1; AT3G510 95.4 0.095 3.2E-06 38.5 8.8 61 12-77 60-122 (124)
139 3m9j_A Thioredoxin; oxidoreduc 95.4 0.073 2.5E-06 37.2 7.9 54 19-77 51-104 (105)
140 3emx_A Thioredoxin; structural 95.4 0.084 2.9E-06 39.4 8.6 68 11-80 52-127 (135)
141 1x1m_A Ubiquitin-like protein 95.4 0.068 2.3E-06 38.9 7.8 71 170-246 12-97 (107)
142 3qou_A Protein YBBN; thioredox 95.4 0.066 2.3E-06 45.1 8.8 59 16-78 55-113 (287)
143 1wm3_A Ubiquitin-like protein 95.4 0.16 5.5E-06 34.1 9.0 68 171-245 2-70 (72)
144 3apq_A DNAJ homolog subfamily 95.4 0.068 2.3E-06 43.1 8.5 63 15-81 142-204 (210)
145 3d6i_A Monothiol glutaredoxin- 95.3 0.11 3.7E-06 36.9 8.7 55 19-78 54-108 (112)
146 3erw_A Sporulation thiol-disul 95.3 0.037 1.3E-06 41.0 6.3 41 33-74 104-144 (145)
147 2l7r_A Ubiquitin-like protein 95.3 0.065 2.2E-06 37.9 7.3 68 170-246 19-87 (93)
148 2l5o_A Putative thioredoxin; s 95.3 0.032 1.1E-06 42.1 6.0 48 33-81 96-143 (153)
149 3kh7_A Thiol:disulfide interch 95.3 0.039 1.3E-06 43.3 6.7 46 34-80 123-168 (176)
150 4evm_A Thioredoxin family prot 95.3 0.042 1.4E-06 40.0 6.4 42 34-76 95-136 (138)
151 1x5e_A Thioredoxin domain cont 95.2 0.11 3.7E-06 37.9 8.6 57 19-80 55-111 (126)
152 2xc2_A Thioredoxinn; oxidoredu 95.2 0.11 3.7E-06 37.4 8.5 62 11-77 54-116 (117)
153 3b1l_X E3 ubiquitin-protein li 94.2 0.0033 1.1E-07 42.7 0.0 67 172-245 2-69 (76)
154 2vm1_A Thioredoxin, thioredoxi 95.1 0.11 3.6E-06 37.2 8.1 64 12-80 50-115 (118)
155 2vim_A Thioredoxin, TRX; thior 95.1 0.15 5.1E-06 35.4 8.7 54 19-77 50-103 (104)
156 3l0w_B Monoubiquitinated proli 95.1 0.14 4.7E-06 40.5 9.3 68 172-246 2-70 (169)
157 2b1k_A Thiol:disulfide interch 95.1 0.036 1.2E-06 42.6 5.7 47 33-80 115-161 (168)
158 1nho_A Probable thioredoxin; b 95.0 0.059 2E-06 36.2 6.1 52 19-78 33-84 (85)
159 1kng_A Thiol:disulfide interch 95.0 0.052 1.8E-06 40.9 6.4 45 34-79 108-152 (156)
160 1v5t_A 8430435I17RIK protein; 95.0 0.11 3.9E-06 36.4 7.7 71 169-245 6-79 (90)
161 2daj_A KIAA0977 protein, COBL- 95.0 0.16 5.3E-06 35.5 7.9 68 168-239 8-75 (91)
162 3lor_A Thiol-disulfide isomera 95.0 0.026 8.9E-07 42.9 4.6 45 35-80 112-156 (160)
163 1wgg_A Ubiquitin carboxyl-term 95.0 0.065 2.2E-06 38.3 6.4 68 169-245 6-75 (96)
164 1ti3_A Thioredoxin H, PTTRXH1; 95.0 0.1 3.4E-06 37.0 7.5 55 19-78 57-111 (113)
165 2wz9_A Glutaredoxin-3; protein 94.9 0.15 5E-06 38.9 8.8 57 19-80 63-119 (153)
166 3m63_B Ubiquitin domain-contai 94.8 0.051 1.7E-06 39.2 5.5 68 170-245 28-96 (101)
167 3aps_A DNAJ homolog subfamily 94.8 0.075 2.5E-06 38.5 6.5 63 15-81 49-115 (122)
168 3kcm_A Thioredoxin family prot 94.7 0.21 7.3E-06 37.4 9.3 62 19-81 61-145 (154)
169 1gh2_A Thioredoxin-like protei 94.7 0.2 6.7E-06 35.3 8.5 54 19-77 52-105 (107)
170 3f3q_A Thioredoxin-1; His TAG, 94.7 0.21 7.2E-06 35.5 8.7 53 19-76 55-107 (109)
171 2kj6_A Tubulin folding cofacto 94.7 0.28 9.6E-06 35.1 9.2 76 168-245 12-92 (97)
172 3q3f_A Ribonuclease/ubiquitin 94.7 0.12 3.9E-06 41.9 7.8 68 171-245 106-174 (189)
173 3d22_A TRXH4, thioredoxin H-ty 94.6 0.18 6.2E-06 37.4 8.4 57 19-80 77-133 (139)
174 2vlu_A Thioredoxin, thioredoxi 94.6 0.18 6E-06 36.4 8.1 56 19-79 65-120 (122)
175 2j23_A Thioredoxin; immune pro 94.6 0.088 3E-06 38.4 6.4 54 20-78 67-120 (121)
176 4a3p_A Ubiquitin carboxyl-term 94.5 0.073 2.5E-06 43.9 6.5 65 182-247 141-207 (217)
177 3gl3_A Putative thiol:disulfid 94.5 0.37 1.3E-05 35.9 10.0 47 34-81 96-144 (152)
178 3fkf_A Thiol-disulfide oxidore 94.5 0.15 5.2E-06 37.7 7.7 57 19-79 67-146 (148)
179 3hcz_A Possible thiol-disulfid 94.4 0.11 3.6E-06 38.6 6.8 44 35-79 103-146 (148)
180 2dzj_A Synaptic glycoprotein S 94.4 0.15 5.1E-06 35.8 7.0 71 171-245 11-85 (88)
181 3lwa_A Secreted thiol-disulfid 94.4 0.27 9.2E-06 38.2 9.4 39 40-79 143-181 (183)
182 3or5_A Thiol:disulfide interch 94.3 0.14 4.9E-06 38.8 7.4 41 40-81 113-153 (165)
183 3jyu_A Ubiquitin carboxyl-term 94.2 0.18 6.2E-06 41.9 8.3 64 182-246 153-218 (231)
184 4b6w_A Tubulin-specific chaper 94.2 0.2 6.8E-06 35.0 7.2 71 170-245 2-80 (86)
185 1wf9_A NPL4 family protein; be 94.1 0.07 2.4E-06 38.9 4.9 74 171-246 8-92 (107)
186 3cxg_A Putative thioredoxin; m 94.1 0.17 5.8E-06 37.7 7.2 58 19-79 70-129 (133)
187 2daf_A FLJ35834 protein; hypot 94.0 0.38 1.3E-05 35.7 8.7 70 169-245 14-85 (118)
188 2lrt_A Uncharacterized protein 93.9 0.5 1.7E-05 35.7 9.8 59 19-78 68-147 (152)
189 1fo5_A Thioredoxin; disulfide 93.9 0.098 3.4E-06 35.0 5.1 51 19-77 34-84 (85)
190 1zma_A Bacterocin transport ac 93.9 0.18 6.2E-06 36.3 6.8 42 31-74 75-116 (118)
191 1oqy_A HHR23A, UV excision rep 93.8 0.21 7.1E-06 44.5 8.3 69 169-243 6-77 (368)
192 3ai5_A Yeast enhanced green fl 93.8 0.32 1.1E-05 42.2 9.3 72 168-246 231-303 (307)
193 2oe3_A Thioredoxin-3; electron 93.8 0.3 1E-05 35.1 7.9 52 19-75 61-112 (114)
194 2pu9_C TRX-F, thioredoxin F-ty 93.7 0.34 1.2E-05 34.2 8.0 55 19-77 55-109 (111)
195 3gix_A Thioredoxin-like protei 93.6 0.12 4.1E-06 39.5 5.6 59 18-80 54-122 (149)
196 1mek_A Protein disulfide isome 93.5 0.082 2.8E-06 37.7 4.4 56 19-78 59-116 (120)
197 3u5e_m 60S ribosomal protein L 93.5 0.013 4.4E-07 44.3 0.0 67 172-245 2-69 (128)
198 3u30_A Ubiquitin, linear DI-ub 93.5 0.31 1E-05 38.3 8.0 69 170-245 96-165 (172)
199 1a8l_A Protein disulfide oxido 93.4 0.36 1.2E-05 38.8 8.6 57 18-78 169-225 (226)
200 1faa_A Thioredoxin F; electron 93.3 0.35 1.2E-05 34.9 7.7 55 19-77 68-122 (124)
201 2rli_A SCO2 protein homolog, m 93.3 0.24 8.1E-06 37.9 7.0 48 33-81 104-166 (171)
202 3kyd_D Small ubiquitin-related 93.3 0.62 2.1E-05 34.4 8.8 71 168-245 38-109 (115)
203 1v6e_A Cytoskeleton-associated 93.3 0.49 1.7E-05 33.4 8.1 74 170-245 7-84 (95)
204 2yj7_A LPBCA thioredoxin; oxid 92.4 0.015 5.3E-07 40.6 0.0 55 18-76 50-104 (106)
205 3dxb_A Thioredoxin N-terminall 93.2 0.26 8.7E-06 40.1 7.4 63 15-81 58-120 (222)
206 2dzm_A FAS-associated factor 1 93.1 0.5 1.7E-05 34.0 8.0 70 170-246 9-79 (100)
207 2lrn_A Thiol:disulfide interch 92.8 0.78 2.7E-05 34.3 9.2 59 19-81 62-143 (152)
208 1ilo_A Conserved hypothetical 92.7 0.29 1E-05 32.0 5.9 46 17-73 29-75 (77)
209 1jfu_A Thiol:disulfide interch 92.6 0.97 3.3E-05 35.0 9.8 62 18-80 92-181 (186)
210 1t0y_A Tubulin folding cofacto 92.5 1 3.4E-05 33.4 9.2 76 169-246 5-84 (122)
211 1qgv_A Spliceosomal protein U5 92.4 0.31 1.1E-05 36.8 6.4 61 16-80 52-122 (142)
212 3fw2_A Thiol-disulfide oxidore 92.2 0.5 1.7E-05 35.3 7.4 43 33-79 106-148 (150)
213 3pge_A SUMO-modified prolifera 92.2 0.87 3E-05 37.0 9.1 71 167-245 26-97 (200)
214 3hdc_A Thioredoxin family prot 92.1 0.47 1.6E-05 35.9 7.2 58 18-76 73-149 (158)
215 2al3_A TUG long isoform; TUG U 91.9 0.49 1.7E-05 33.4 6.3 65 172-243 11-76 (90)
216 2ywi_A Hypothetical conserved 91.8 0.51 1.8E-05 36.9 7.3 47 34-81 121-176 (196)
217 3q6o_A Sulfhydryl oxidase 1; p 91.7 0.7 2.4E-05 37.8 8.4 61 19-81 65-129 (244)
218 2av4_A Thioredoxin-like protei 91.7 0.28 9.7E-06 38.5 5.5 59 18-80 72-140 (160)
219 2fnj_B Transcription elongatio 91.7 0.39 1.3E-05 35.7 6.0 60 173-239 3-63 (118)
220 3t58_A Sulfhydryl oxidase 1; o 91.7 0.89 3E-05 42.2 9.8 63 19-81 65-129 (519)
221 3u5c_f 40S ribosomal protein S 91.6 0.033 1.1E-06 43.5 0.0 67 172-245 2-69 (152)
222 2djj_A PDI, protein disulfide- 91.6 0.26 8.7E-06 35.4 4.9 54 19-78 62-116 (121)
223 2f51_A Thioredoxin; electron t 91.6 0.51 1.7E-05 34.0 6.5 58 18-78 53-112 (118)
224 2hyx_A Protein DIPZ; thioredox 91.4 0.2 6.8E-06 44.3 4.8 47 33-80 154-200 (352)
225 3ha9_A Uncharacterized thiored 91.4 0.16 5.6E-06 38.7 3.8 63 10-78 99-163 (165)
226 3tix_A Ubiquitin-like protein 91.2 0.81 2.8E-05 37.0 7.7 71 167-245 54-125 (207)
227 4dbg_A Ranbp-type and C3HC4-ty 90.9 1.1 3.7E-05 32.6 7.6 76 163-245 15-96 (105)
228 3h79_A Thioredoxin-like protei 90.9 0.75 2.6E-05 33.4 7.0 56 18-76 69-125 (127)
229 1a8l_A Protein disulfide oxido 90.9 1.3 4.5E-05 35.4 9.1 60 18-79 53-113 (226)
230 3ed3_A Protein disulfide-isome 90.9 0.84 2.9E-05 39.0 8.2 66 12-79 60-142 (298)
231 3eur_A Uncharacterized protein 90.1 0.22 7.4E-06 37.0 3.4 45 18-63 66-132 (142)
232 3drn_A Peroxiredoxin, bacterio 90.0 0.54 1.8E-05 35.8 5.6 60 19-79 63-145 (161)
233 3ewl_A Uncharacterized conserv 89.8 0.55 1.9E-05 34.5 5.4 37 36-76 102-138 (142)
234 2ywm_A Glutaredoxin-like prote 89.8 1.2 4E-05 35.9 7.8 55 19-80 167-221 (229)
235 3iv4_A Putative oxidoreductase 89.7 1.1 3.8E-05 32.9 6.8 67 5-73 33-110 (112)
236 3idv_A Protein disulfide-isome 89.7 1.3 4.3E-05 35.7 8.0 56 20-80 68-123 (241)
237 2dj3_A Protein disulfide-isome 89.5 0.72 2.4E-05 33.6 5.8 61 18-81 58-120 (133)
238 3shq_A UBLCP1; phosphatase, hy 89.4 1.1 3.8E-05 39.0 7.8 71 169-245 4-76 (320)
239 2djk_A PDI, protein disulfide- 89.2 0.69 2.3E-05 34.2 5.6 59 19-80 54-116 (133)
240 2jxx_A Nfatc2-interacting prot 89.2 3.3 0.00011 29.5 8.9 70 168-244 23-93 (97)
241 1wmj_A Thioredoxin H-type; str 89.2 0.2 6.9E-06 36.4 2.5 65 11-80 57-123 (130)
242 3s9f_A Tryparedoxin; thioredox 88.9 1.4 4.8E-05 33.7 7.4 29 33-61 118-146 (165)
243 1sji_A Calsequestrin 2, calseq 88.3 2 6.7E-05 37.2 8.7 64 11-79 58-122 (350)
244 2dj0_A Thioredoxin-related tra 88.1 0.74 2.5E-05 34.0 5.1 48 19-70 59-112 (137)
245 4ajy_B Transcription elongatio 88.0 1.2 4E-05 33.1 5.9 59 175-240 5-64 (118)
246 1i5g_A Tryparedoxin II; electr 87.9 2.1 7.2E-05 31.4 7.6 44 18-61 61-126 (144)
247 1o8x_A Tryparedoxin, TRYX, TXN 87.7 2 6.9E-05 31.6 7.4 30 32-61 97-126 (146)
248 2dbc_A PDCL2, unnamed protein 87.6 1.7 5.9E-05 32.1 6.9 58 11-75 51-117 (135)
249 3me7_A Putative uncharacterize 87.5 2 6.8E-05 33.1 7.5 51 30-81 104-164 (170)
250 2r2j_A Thioredoxin domain-cont 87.3 1.9 6.4E-05 38.0 8.0 58 19-80 60-118 (382)
251 1o73_A Tryparedoxin; electron 87.0 2.1 7.2E-05 31.3 7.1 30 32-61 97-126 (144)
252 1zof_A Alkyl hydroperoxide-red 86.4 1.5 5.1E-05 34.5 6.2 44 34-78 108-160 (198)
253 3idv_A Protein disulfide-isome 86.3 3.1 0.00011 33.3 8.3 55 20-79 183-237 (241)
254 3cmi_A Peroxiredoxin HYR1; thi 86.3 1.1 3.7E-05 34.3 5.3 41 38-79 122-168 (171)
255 3f8u_A Protein disulfide-isome 86.3 1.3 4.4E-05 40.1 6.5 63 13-79 47-109 (481)
256 1xvw_A Hypothetical protein RV 85.8 0.97 3.3E-05 34.0 4.7 49 19-68 70-145 (160)
257 3uem_A Protein disulfide-isome 85.7 1.5 5E-05 38.0 6.3 53 19-75 301-353 (361)
258 2cvb_A Probable thiol-disulfid 85.5 2.2 7.6E-05 33.0 6.8 47 34-81 107-161 (188)
259 2bmx_A Alkyl hydroperoxidase C 85.0 1.1 3.7E-05 35.3 4.8 45 34-79 117-170 (195)
260 2hls_A Protein disulfide oxido 85.0 3.3 0.00011 34.1 7.9 56 18-81 173-228 (243)
261 1sen_A Thioredoxin-like protei 84.9 0.82 2.8E-05 35.2 3.9 59 19-81 80-150 (164)
262 2b5e_A Protein disulfide-isome 84.9 3 0.0001 37.9 8.3 62 14-79 58-122 (504)
263 2qc7_A ERP31, ERP28, endoplasm 84.6 2.6 8.8E-05 35.0 7.1 58 19-78 54-118 (240)
264 1xzo_A BSSCO, hypothetical pro 84.6 4.3 0.00015 30.6 8.0 40 39-79 131-172 (174)
265 2b7k_A SCO1 protein; metalloch 84.5 2.5 8.4E-05 33.5 6.7 48 33-81 118-181 (200)
266 2k6v_A Putative cytochrome C o 84.4 0.83 2.8E-05 34.6 3.7 35 41-77 135-171 (172)
267 1we0_A Alkyl hydroperoxide red 84.3 5.1 0.00017 30.9 8.4 60 19-79 65-157 (187)
268 2c0g_A ERP29 homolog, windbeut 83.5 3.8 0.00013 34.2 7.7 58 19-79 66-132 (248)
269 2ywm_A Glutaredoxin-like prote 82.7 4.6 0.00016 32.2 7.8 59 17-79 57-115 (229)
270 3us3_A Calsequestrin-1; calciu 81.8 4.5 0.00015 35.3 7.9 56 19-79 69-124 (367)
271 3a2v_A Probable peroxiredoxin; 81.6 4.9 0.00017 33.5 7.7 60 18-78 66-161 (249)
272 2v1m_A Glutathione peroxidase; 81.1 1.7 5.9E-05 32.7 4.4 38 41-79 130-167 (169)
273 2h01_A 2-Cys peroxiredoxin; th 80.8 4.3 0.00015 31.5 6.8 44 34-78 106-158 (192)
274 2obi_A PHGPX, GPX-4, phospholi 80.8 1.2 4E-05 34.7 3.3 34 42-76 148-181 (183)
275 3evi_A Phosducin-like protein 80.7 3.1 0.00011 30.3 5.5 40 19-65 54-93 (118)
276 1uul_A Tryparedoxin peroxidase 80.0 3.9 0.00013 32.2 6.3 44 34-78 111-164 (202)
277 2vup_A Glutathione peroxidase- 80.0 2.8 9.6E-05 32.7 5.4 41 39-80 140-186 (190)
278 1zye_A Thioredoxin-dependent p 80.0 5.6 0.00019 32.0 7.3 45 34-79 131-185 (220)
279 1ttz_A Conserved hypothetical 79.9 5.6 0.00019 27.3 6.3 60 11-80 16-78 (87)
280 3dwv_A Glutathione peroxidase- 79.6 2.5 8.6E-05 32.9 5.0 40 40-80 142-184 (187)
281 4f9z_D Endoplasmic reticulum r 79.6 9.5 0.00033 30.6 8.7 61 18-79 162-225 (227)
282 2p5q_A Glutathione peroxidase 79.6 9.2 0.00032 28.5 8.2 37 42-79 129-168 (170)
283 2trc_P Phosducin, MEKA, PP33; 79.3 1.2 4.1E-05 36.3 3.0 44 19-67 151-194 (217)
284 3apo_A DNAJ homolog subfamily 78.2 6.6 0.00023 37.7 8.4 60 15-79 483-542 (780)
285 3u5r_E Uncharacterized protein 78.1 7.8 0.00027 30.9 7.7 48 33-81 133-189 (218)
286 3f8u_A Protein disulfide-isome 77.5 3.6 0.00012 37.0 6.0 57 19-79 404-461 (481)
287 4fo5_A Thioredoxin-like protei 77.2 1.5 5E-05 32.3 2.7 37 34-74 104-140 (143)
288 3uem_A Protein disulfide-isome 76.7 7.3 0.00025 33.5 7.6 62 17-80 165-231 (361)
289 1qmv_A Human thioredoxin perox 76.7 6.6 0.00023 30.6 6.7 43 34-77 109-161 (197)
290 1wou_A Thioredoxin -related pr 76.5 2 6.8E-05 31.0 3.3 42 11-52 52-101 (123)
291 2i81_A 2-Cys peroxiredoxin; st 76.3 11 0.00039 29.9 8.2 44 34-78 127-179 (213)
292 3ivf_A Talin-1; FERM domain, c 75.9 13 0.00045 32.4 9.0 71 169-239 84-157 (371)
293 3kp8_A Vkorc1/thioredoxin doma 75.7 4.8 0.00016 28.5 5.1 36 31-73 54-89 (106)
294 3apo_A DNAJ homolog subfamily 74.6 4.4 0.00015 39.0 6.0 62 16-81 704-769 (780)
295 1wjk_A C330018D20RIK protein; 73.8 14 0.00048 25.6 7.2 61 11-78 32-95 (100)
296 1v58_A Thiol:disulfide interch 73.5 5.5 0.00019 32.6 5.6 47 33-81 189-235 (241)
297 3gv1_A Disulfide interchange p 72.2 5.8 0.0002 30.1 5.1 46 30-81 96-141 (147)
298 2i1j_A Moesin; FERM, coiled-co 71.9 16 0.00056 34.2 9.0 69 169-239 3-71 (575)
299 3bj5_A Protein disulfide-isome 71.2 17 0.00058 27.3 7.6 62 18-80 63-128 (147)
300 3ga4_A Dolichyl-diphosphooligo 71.0 24 0.00083 27.7 8.6 60 18-79 80-153 (178)
301 3qij_A Protein 4.1; cytoskelet 70.3 8.5 0.00029 32.7 6.2 68 169-237 16-83 (296)
302 3ivf_A Talin-1; FERM domain, c 70.2 11 0.00037 33.0 7.1 70 170-242 3-77 (371)
303 3kij_A Probable glutathione pe 69.8 21 0.0007 27.2 8.0 33 47-80 139-171 (180)
304 1h4r_A Merlin; FERM, neurofibr 69.0 19 0.00065 30.5 8.2 69 168-239 20-88 (314)
305 3gkn_A Bacterioferritin comigr 68.8 23 0.0008 26.1 8.0 30 34-64 103-144 (163)
306 1ef1_A Moesin; membrane, FERM 68.8 23 0.00079 29.6 8.7 67 171-239 2-68 (294)
307 2p31_A CL683, glutathione pero 67.9 8.5 0.00029 29.5 5.3 32 46-78 149-180 (181)
308 1n8j_A AHPC, alkyl hydroperoxi 65.9 7 0.00024 30.4 4.5 43 35-78 103-155 (186)
309 3ztl_A Thioredoxin peroxidase; 65.8 3.4 0.00012 33.3 2.7 41 34-75 144-194 (222)
310 4eo3_A Bacterioferritin comigr 65.7 24 0.00081 30.3 8.2 72 8-80 40-140 (322)
311 2xzm_9 RPS31E; ribosome, trans 65.5 1.3 4.4E-05 35.6 0.0 62 172-244 2-63 (189)
312 2f8a_A Glutathione peroxidase 65.4 6.5 0.00022 31.3 4.3 37 41-78 170-206 (208)
313 2in3_A Hypothetical protein; D 64.8 16 0.00053 28.7 6.5 47 33-81 166-212 (216)
314 1a0r_P Phosducin, MEKA, PP33; 64.8 5.6 0.00019 33.0 3.8 58 19-81 164-224 (245)
315 3qcp_A QSOX from trypanosoma b 64.3 11 0.00038 34.5 6.0 59 19-79 82-152 (470)
316 2gs3_A PHGPX, GPX-4, phospholi 63.0 4.3 0.00015 31.4 2.7 32 44-76 152-183 (185)
317 4hde_A SCO1/SENC family lipopr 61.6 15 0.0005 28.1 5.6 36 42-78 132-169 (170)
318 2ls5_A Uncharacterized protein 65.0 1.8 6.1E-05 32.4 0.0 34 35-70 104-139 (159)
319 3p7x_A Probable thiol peroxida 60.6 7.8 0.00027 29.2 3.7 42 34-76 113-165 (166)
320 2a4v_A Peroxiredoxin DOT5; yea 60.1 7.6 0.00026 29.0 3.6 45 34-80 102-155 (159)
321 3onh_A Ubiquitin-activating en 58.8 25 0.00085 26.2 6.0 51 191-244 20-74 (127)
322 2b5e_A Protein disulfide-isome 58.5 9.3 0.00032 34.6 4.5 55 19-79 411-467 (504)
323 4gqc_A Thiol peroxidase, perox 58.4 36 0.0012 25.6 7.3 62 17-79 65-160 (164)
324 3gyk_A 27KDA outer membrane pr 57.3 20 0.0007 27.0 5.7 41 32-79 133-173 (175)
325 2e7p_A Glutaredoxin; thioredox 56.4 7.1 0.00024 27.3 2.7 44 18-65 45-91 (116)
326 3keb_A Probable thiol peroxida 55.6 24 0.00083 28.7 6.1 46 34-80 118-177 (224)
327 2jsy_A Probable thiol peroxida 55.3 24 0.00081 26.3 5.7 45 33-78 111-166 (167)
328 3h93_A Thiol:disulfide interch 55.3 12 0.0004 29.0 4.0 44 33-80 142-185 (192)
329 3feu_A Putative lipoprotein; a 54.5 21 0.00073 27.6 5.5 44 32-79 141-184 (185)
330 3v7o_A Minor nucleoprotein VP3 53.7 2.7 9.4E-05 34.4 0.0 73 161-243 14-87 (227)
331 3kzq_A Putative uncharacterize 53.6 29 0.001 27.2 6.2 45 34-80 160-204 (208)
332 2fgx_A Putative thioredoxin; N 53.4 35 0.0012 24.3 6.0 49 19-74 58-106 (107)
333 4g2e_A Peroxiredoxin; redox pr 52.7 46 0.0016 24.7 7.0 57 18-75 63-154 (157)
334 2c0d_A Thioredoxin peroxidase 52.1 16 0.00056 29.3 4.5 44 34-78 131-183 (221)
335 3pvl_A Myosin VIIA isoform 1; 51.9 31 0.0011 32.8 7.0 49 169-217 262-310 (655)
336 2r37_A Glutathione peroxidase 50.7 24 0.00082 28.0 5.3 35 45-80 160-194 (207)
337 2i3y_A Epididymal secretory gl 50.0 20 0.0007 28.7 4.8 35 45-80 178-212 (215)
338 3qpm_A Peroxiredoxin; oxidored 49.8 8.2 0.00028 31.6 2.3 42 34-76 152-203 (240)
339 2d3g_P Ubiquitin interacting m 49.3 15 0.0005 19.3 2.4 17 111-127 2-18 (26)
340 3bci_A Disulfide bond protein 46.8 31 0.0011 26.3 5.3 41 33-80 139-179 (186)
341 1xvq_A Thiol peroxidase; thior 46.5 9.4 0.00032 29.1 2.1 42 34-76 110-165 (175)
342 2pn8_A Peroxiredoxin-4; thiore 46.3 28 0.00096 27.5 5.0 44 34-78 123-176 (211)
343 2yzh_A Probable thiol peroxida 45.4 22 0.00074 26.7 4.1 33 44-77 133-170 (171)
344 2znm_A Thiol:disulfide interch 44.7 38 0.0013 25.9 5.5 42 33-80 140-181 (195)
345 2lus_A Thioredoxion; CR-Trp16, 50.5 4.6 0.00016 29.2 0.0 27 33-60 98-124 (143)
346 3ixr_A Bacterioferritin comigr 44.4 99 0.0034 23.3 8.2 57 19-76 85-175 (179)
347 3uf8_A Ubiquitin-like protein 44.0 1.2E+02 0.004 24.2 8.4 72 159-240 12-83 (209)
348 1eej_A Thiol:disulfide interch 43.7 23 0.0008 28.1 4.2 42 31-78 169-210 (216)
349 4dvc_A Thiol:disulfide interch 43.6 39 0.0013 25.3 5.4 42 33-78 140-181 (184)
350 3gmf_A Protein-disulfide isome 43.5 38 0.0013 26.8 5.4 41 34-81 158-199 (205)
351 2hls_A Protein disulfide oxido 43.0 66 0.0023 25.9 6.9 53 20-79 65-117 (243)
352 3au4_A Myosin-X; protein-prote 42.8 48 0.0016 30.5 6.7 48 170-217 216-264 (555)
353 2l76_A Nfatc2-interacting prot 41.6 89 0.003 21.9 8.7 64 170-241 21-84 (95)
354 1psq_A Probable thiol peroxida 41.2 34 0.0012 25.4 4.6 41 34-75 110-161 (163)
355 3gha_A Disulfide bond formatio 40.5 48 0.0016 26.0 5.5 42 33-81 153-194 (202)
356 4dxa_B KREV interaction trappe 40.5 21 0.00071 30.5 3.6 52 167-220 2-55 (322)
357 1wgr_A Growth factor receptor- 40.5 92 0.0032 22.0 6.4 53 168-220 7-59 (100)
358 2rem_A Disulfide oxidoreductas 39.6 50 0.0017 25.1 5.4 41 33-80 145-185 (193)
359 1tp9_A Peroxiredoxin, PRX D (t 39.5 26 0.00089 26.2 3.6 30 33-64 106-146 (162)
360 3ix6_A TS, tsase, thymidylate 39.1 6.3 0.00022 34.8 0.0 68 168-243 19-87 (360)
361 3q6o_A Sulfhydryl oxidase 1; p 38.9 83 0.0028 25.0 6.9 38 33-72 195-232 (244)
362 1t3b_A Thiol:disulfide interch 38.5 36 0.0012 26.9 4.5 39 32-76 170-208 (211)
363 3tjj_A Peroxiredoxin-4; thiore 37.7 14 0.00048 30.6 1.9 41 34-75 166-216 (254)
364 1prx_A HORF6; peroxiredoxin, h 37.4 78 0.0027 25.2 6.4 34 43-77 130-167 (224)
365 4da1_A Protein phosphatase 1K, 37.4 7 0.00024 34.5 0.0 69 167-243 27-96 (389)
366 3kp9_A Vkorc1/thioredoxin doma 36.8 29 0.001 29.5 3.8 36 32-74 240-275 (291)
367 3f4s_A Alpha-DSBA1, putative u 36.4 68 0.0023 25.7 5.9 47 33-80 160-212 (226)
368 1z6n_A Hypothetical protein PA 35.3 86 0.0029 23.8 6.1 42 19-63 85-129 (167)
369 2v2g_A Peroxiredoxin 6; oxidor 34.1 52 0.0018 26.6 4.9 34 43-77 126-163 (233)
370 3gn3_A Putative protein-disulf 33.9 42 0.0014 26.0 4.1 37 34-74 145-181 (182)
371 2bps_A YUKD protein; ubiquitin 33.2 1.1E+02 0.0038 20.6 7.3 72 170-245 4-79 (81)
372 2k8s_A Thioredoxin; dimer, str 32.5 51 0.0018 21.1 3.8 41 13-58 23-66 (80)
373 3dnf_A ISPH, LYTB, 4-hydroxy-3 31.2 1.2E+02 0.0041 25.8 6.7 77 5-81 190-281 (297)
374 2npt_A Dual specificity mitoge 30.9 1.4E+02 0.0047 20.9 6.6 46 169-214 13-60 (106)
375 1z6m_A Conserved hypothetical 30.3 67 0.0023 23.9 4.7 36 32-74 138-173 (175)
376 2kmm_A Guanosine-3',5'-BIS(dip 30.3 72 0.0025 20.2 4.2 27 172-200 2-28 (73)
377 2lru_A Serine/threonine-protei 36.4 11 0.00037 26.8 0.0 36 165-200 20-55 (98)
378 1q0v_A Hydrophilic protein; ha 30.1 32 0.0011 23.5 2.3 21 109-129 8-28 (81)
379 1hyu_A AHPF, alkyl hydroperoxi 29.8 1.3E+02 0.0045 27.1 7.3 51 19-77 148-198 (521)
380 3hz8_A Thiol:disulfide interch 29.4 1E+02 0.0034 23.7 5.7 41 33-80 144-184 (193)
381 3c7m_A Thiol:disulfide interch 29.2 30 0.001 26.4 2.5 41 35-79 154-194 (195)
382 1xcc_A 1-Cys peroxiredoxin; un 28.7 66 0.0022 25.6 4.5 34 43-77 127-164 (220)
383 3gl5_A Putative DSBA oxidoredu 27.9 1.4E+02 0.0048 23.9 6.5 43 33-81 173-215 (239)
384 1rlf_A RLF, RLF-RBD; signal tr 27.8 1.5E+02 0.0052 20.5 7.6 60 167-226 2-68 (90)
385 3zrd_A Thiol peroxidase; oxido 26.8 50 0.0017 25.7 3.5 40 34-74 146-199 (200)
386 2kw3_C Regulatory factor X-ass 26.4 27 0.00094 22.1 1.4 14 5-18 27-40 (62)
387 1y8x_B Ubiquitin-activating en 25.2 57 0.0019 23.0 3.1 61 183-245 7-81 (98)
388 2al6_A Focal adhesion kinase 1 24.8 80 0.0027 27.5 4.7 65 172-236 9-77 (375)
389 1k66_A Phytochrome response re 23.6 1.4E+02 0.0048 20.6 5.3 63 19-81 64-139 (149)
390 3cnb_A DNA-binding response re 23.4 1.8E+02 0.0063 19.9 6.1 71 11-81 45-131 (143)
391 3kht_A Response regulator; PSI 21.9 1.2E+02 0.0041 21.2 4.5 71 11-81 42-129 (144)
392 3sbc_A Peroxiredoxin TSA1; alp 21.5 3.1E+02 0.011 21.8 7.8 63 14-77 81-179 (216)
393 3hd5_A Thiol:disulfide interch 21.4 1E+02 0.0036 23.3 4.4 43 33-79 141-184 (195)
394 3cg4_A Response regulator rece 21.1 2.1E+02 0.0071 19.6 6.5 71 11-81 42-128 (142)
395 1nm3_A Protein HI0572; hybrid, 20.7 1.1E+02 0.0037 24.2 4.4 32 43-76 124-164 (241)
396 2imf_A HCCA isomerase, 2-hydro 20.1 1.5E+02 0.0053 22.6 5.1 40 33-79 157-196 (203)
397 1q98_A Thiol peroxidase, TPX; 20.0 73 0.0025 23.5 3.1 30 33-63 110-148 (165)
No 1
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.90 E-value=8.9e-24 Score=159.39 Aligned_cols=86 Identities=27% Similarity=0.484 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccc
Q 025774 156 YPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFED 235 (248)
Q Consensus 156 ~~~l~~eP~~~~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d 235 (248)
...||+||..+.+++|+|+||||||+|++|||+.+++|++||+||.++ ++.+..|.|+++|||+. +..|.++||+|
T Consensus 9 ~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~--l~~d~~~TL~e 84 (109)
T 2cr5_A 9 VPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRA--LEVEGGSSLED 84 (109)
T ss_dssp CCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCB--CCCCSSCBHHH
T ss_pred cccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEEeCCCCcC--CCCCCCCCHHH
Confidence 568999999888899999999999999999999999999999999986 55688999999999987 55578999999
Q ss_pred cCCcCceEEE
Q 025774 236 SGLANAMISV 245 (248)
Q Consensus 236 ~gl~~~~v~v 245 (248)
+||.|+++|+
T Consensus 85 ~gL~p~a~L~ 94 (109)
T 2cr5_A 85 IGITVDTVLN 94 (109)
T ss_dssp HTCSSCEEEE
T ss_pred cCCCCCeEEE
Confidence 9999877654
No 2
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.84 E-value=3.9e-21 Score=148.61 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=71.6
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcCceEEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 246 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~~v~v~ 246 (248)
..++|+||||||||+|++++|+.+++|++||+||.++..++....|.|+++||++. +. |.++||+|+||.|++|+++
T Consensus 49 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~--l~-d~~~TL~eagL~psavl~k 125 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKE--LA-DENQTLKEANLLNAVIVQR 125 (127)
T ss_dssp TSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEE--CC-STTCBHHHHTCSSCEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCC--CC-CCCCcHHHCCCcCceEEEE
Confidence 35689999999999999999999999999999999986555578999999999986 64 6799999999999999999
Q ss_pred eC
Q 025774 247 WE 248 (248)
Q Consensus 247 ~~ 248 (248)
|+
T Consensus 126 ~~ 127 (127)
T 1s3s_G 126 LT 127 (127)
T ss_dssp EC
T ss_pred eC
Confidence 95
No 3
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.84 E-value=1.3e-20 Score=135.62 Aligned_cols=76 Identities=17% Similarity=0.378 Sum_probs=66.5
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcCceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~~v~v 245 (248)
.+++|+|+||||||++++|+|+.+++|++||+||.+. ++.+.+|.|+++||++.++ ..|.++||+|+||.|+++|+
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~-~~d~~~TL~e~gL~p~a~L~ 79 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVT-QLDPNKSLLEVKLFPQETLF 79 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT--TCCTTTEEEECSSSCCBGG-GSCTTSBTTTTTCCSEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc--CCCCCCeEEEeCCCCCCCc-CCCCCCCHHHCCCCCCCEEE
Confidence 3579999999999999999999999999999999985 5578999999999999743 24789999999999766553
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.83 E-value=2e-20 Score=140.91 Aligned_cols=84 Identities=24% Similarity=0.350 Sum_probs=70.5
Q ss_pred CCCCCCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcCce
Q 025774 163 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM 242 (248)
Q Consensus 163 P~~~~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~~ 242 (248)
|.++.++.|+||||||||++++++|+.+++|++||+||.++. +....+|.|+++|||+.+.. .|.++||+|+||.|++
T Consensus 6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~-~~~~~~f~L~t~fPrk~l~~-~d~~~TL~elgL~psa 83 (109)
T 2dzk_A 6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTV-GNTYGNFSLATMFPRREFTR-EDYKRRLLDLELAPSA 83 (109)
T ss_dssp CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHH-TTSSCSCEEECSSSCCBCCT-TTTTSBTGGGTCSSEE
T ss_pred CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcc-CCCCCceEEEcCCCCcCCcc-cccCCCHHHCCCCCce
Confidence 344456789999999999999999999999999999999985 34568999999999997333 3679999999999854
Q ss_pred -EEEEeC
Q 025774 243 -ISVTWE 248 (248)
Q Consensus 243 -v~v~~~ 248 (248)
|+|+|.
T Consensus 84 ~L~v~~~ 90 (109)
T 2dzk_A 84 SVVLLPA 90 (109)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 668774
No 5
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.80 E-value=2.2e-19 Score=138.06 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=70.1
Q ss_pred CCCCCCCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccC-CCcCCCccccCCcC
Q 025774 162 EPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLAN 240 (248)
Q Consensus 162 eP~~~~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~-~d~~~tl~d~gl~~ 240 (248)
.|.++.++.|+|+||||||+|++|||+.+++|++||+||.++ ++.+.+|.|+++|||+. +. .|.++||+|+||.|
T Consensus 35 ~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--~~~~~~F~L~t~fPrk~--l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 35 EGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GYPNERFELLTNFPRRK--LSHLDYDITLQEAGLCP 110 (124)
T ss_dssp CCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCE--ETSSCSSSCTTTTTCCS
T ss_pred cccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEecCCCCcC--CccCCCCCCHHHCCCCC
Confidence 344456789999999999999999999999999999999987 55678999999999997 43 37899999999997
Q ss_pred -ceEEEEe
Q 025774 241 -AMISVTW 247 (248)
Q Consensus 241 -~~v~v~~ 247 (248)
++|+|++
T Consensus 111 sa~Liv~~ 118 (124)
T 1wj4_A 111 QETVFVQE 118 (124)
T ss_dssp SBCCEEEE
T ss_pred ceEEEEEE
Confidence 5566654
No 6
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=137.38 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=74.3
Q ss_pred CcccccCCCHHHHHHhhcceEEEEEecCChH-------------HHHHHHh---cCCCCCceEEEEeCCCC--ceEEeee
Q 025774 1 MLNRDTWANEAVSQTISTNFIFWQVYDDTSE-------------GKKVCTY---YKLDSIPVVLVVDPITG--QKMRSWC 62 (248)
Q Consensus 1 ~~~r~vl~~~~v~~~l~~~fV~w~~d~~~~e-------------g~~~~~~---~~~~~~P~l~ii~~~~g--~~l~~~~ 62 (248)
.|||+||||+.|++||++|||+|+||+++++ |+++++. |++++||+++||+++.+ +++.+++
T Consensus 72 ~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~ 151 (178)
T 2ec4_A 72 VFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQ 151 (178)
T ss_dssp HHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEEC
T ss_pred HHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEe
Confidence 3899999999999999999999999999999 6678766 89999999999998743 3689999
Q ss_pred CCCChHHHHHHHhhhhhcC
Q 025774 63 GMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 63 G~~~~e~l~~~L~~~~~~~ 81 (248)
|.+++++|+..|+.+++++
T Consensus 152 G~~~~~~ll~~L~~~~e~~ 170 (178)
T 2ec4_A 152 GNTTVDELMMRLMAAMEIF 170 (178)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987
No 7
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.49 E-value=5.7e-14 Score=111.76 Aligned_cols=81 Identities=43% Similarity=0.849 Sum_probs=76.1
Q ss_pred CcccccCCCHHHHHHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 1 MLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 1 ~~~r~vl~~~~v~~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
+|+|+||+|+.|.++|+++||+|++|++++++..+++.|++..+|++++|++.+|+.+.++.| +++++|+..|..+++.
T Consensus 59 ~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~ 137 (153)
T 2dlx_A 59 CLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGE 137 (153)
T ss_dssp HHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999999999999999999999999988888888877 9999999999999998
Q ss_pred CC
Q 025774 81 GP 82 (248)
Q Consensus 81 ~~ 82 (248)
+.
T Consensus 138 ~~ 139 (153)
T 2dlx_A 138 HG 139 (153)
T ss_dssp TC
T ss_pred cC
Confidence 73
No 8
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.68 E-value=3.7e-08 Score=70.27 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=58.0
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
+|+||.++|+.+...|..++||.+|..+|.... +.++..++|..+||++...+ .+.++||+++||.+ ++|+|
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~-gi~~~~qrL~~~~p~k~l~l-~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAIT-GIAPGSQRILVGYPPECLDL-SDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHT-CCCTTTCCCEESSCCCCCCC-CCSSCBTTTSSCCTTCEEEC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHh-CCCccceEEEeCCCCccccc-CCCCCCHHHcCCCCCCEEEE
Confidence 589999999877655999999999999998864 55678899999999875222 24789999999985 55554
No 9
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=97.05 E-value=2.2e-06 Score=64.44 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=65.6
Q ss_pred cCCCHHHHHHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce--EEeeeCCCChHHHHHHHhhhhhcC
Q 025774 6 TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 6 vl~~~~v~~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~--l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
++.++.+.+.+..+++++.+|++..+...++..|++..+|+++++++.+|.. +.++.|..++++|...|...+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~ 118 (130)
T 2lst_A 41 VLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKG 118 (130)
Confidence 3455777788888899999999878888999999999999999999888888 889999999999988888777654
No 10
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=0.00021 Score=53.24 Aligned_cols=71 Identities=15% Similarity=0.326 Sum_probs=61.1
Q ss_pred CHHHHHHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 9 NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 9 ~~~v~~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
++.+.++++.+++++..|.+..+...++..|++..+|+++++++ +|..+.++.|..+.++|...|...+..
T Consensus 52 ~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~-~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 52 DSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINS-SGEVVYRLVGAEDAPELLKKVKLGVES 122 (130)
T ss_dssp CHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECT-TSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred cHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence 35677788889999999998777888999999999999999974 688999999999999998888877654
No 11
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.58 E-value=0.00029 Score=51.79 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=59.1
Q ss_pred CCCCCCCCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-
Q 025774 161 EEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA- 239 (248)
Q Consensus 161 ~eP~~~~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~- 239 (248)
+||..+.....+|.||..+|+.+.-.+..++||.+|..-+... .+.++...+|+.. .+. + +.+.||.++|+.
T Consensus 14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~ 86 (106)
T 1ttn_A 14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-EGVEPGSQRWFFS--GRP--L--TDKMKFEELKIPK 86 (106)
T ss_dssp -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-TCCCSTTCEEEET--TEE--C--CTTSHHHHCCCSS
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-HCcCcccEEEEEC--CEE--C--CCCCcHHHcCCCC
Confidence 5666556667899999999999999999999999999999875 4667788888753 442 5 458999999998
Q ss_pred CceEEEEe
Q 025774 240 NAMISVTW 247 (248)
Q Consensus 240 ~~~v~v~~ 247 (248)
+++|.+..
T Consensus 87 g~ti~lv~ 94 (106)
T 1ttn_A 87 DYVVQVIV 94 (106)
T ss_dssp SCEEEEEC
T ss_pred CCEEEEEE
Confidence 56666653
No 12
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.56 E-value=8e-05 Score=52.15 Aligned_cols=73 Identities=8% Similarity=0.071 Sum_probs=55.6
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
..||||-|+|..... ...++++.+|++.|...+. .+...|.|..+||+.. .+..+.+.||+++||. ++.|.+.
T Consensus 5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~~-i~~~~~~l~~~~~p~~-~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEFG-FQNNGFSVYINRNKTG-EITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHTC-CCTTTCCCCCSCCGGG-GSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHcC-CCCCcceEEecCCCCC-cccCCCCCCHHHcCCCCCCEEEEe
Confidence 569999999974433 7789999999999998763 4567889988998732 3433578999999997 5666553
No 13
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=97.52 E-value=0.00053 Score=53.24 Aligned_cols=71 Identities=10% Similarity=0.234 Sum_probs=58.8
Q ss_pred CCCHHHHHHhhcceEEEEEecCCh---------HHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCC--ChHHHHHHHh
Q 025774 7 WANEAVSQTISTNFIFWQVYDDTS---------EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLV 75 (248)
Q Consensus 7 l~~~~v~~~l~~~fV~w~~d~~~~---------eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~--~~e~l~~~L~ 75 (248)
+.++.+.++.+.+|++..+|++.. ....++..|++..+|+++|+++ +|.++.++ |.. +.++++..|.
T Consensus 71 ~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~-~G~~~~~~-G~~~~~~~~l~~~l~ 148 (154)
T 2ju5_A 71 LQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDA-EGKQLARM-GFEPGGGAAYVSKVK 148 (154)
T ss_dssp TTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEECT-TCCEEEEE-CCCTTCHHHHHHHHH
T ss_pred hcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEcC-CCCEEEEe-cCCCCCHHHHHHHHH
Confidence 334667777778999999999763 4568899999999999999985 68999999 998 8999988888
Q ss_pred hhhh
Q 025774 76 PFMD 79 (248)
Q Consensus 76 ~~~~ 79 (248)
..+.
T Consensus 149 ~~l~ 152 (154)
T 2ju5_A 149 SALK 152 (154)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7664
No 14
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=97.39 E-value=0.00031 Score=55.23 Aligned_cols=76 Identities=13% Similarity=0.273 Sum_probs=63.0
Q ss_pred ccCCCHHHHHHhhcceEEEEEecCChH------------------------HHHHHHhcCCCCCceEEEEeCCCCceEEe
Q 025774 5 DTWANEAVSQTISTNFIFWQVYDDTSE------------------------GKKVCTYYKLDSIPVVLVVDPITGQKMRS 60 (248)
Q Consensus 5 ~vl~~~~v~~~l~~~fV~w~~d~~~~e------------------------g~~~~~~~~~~~~P~l~ii~~~~g~~l~~ 60 (248)
.+|.++.+.++++.+|++...|++... +...+..|++..+|+++|+++ +|.++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~-~G~~~~~ 146 (172)
T 3f9u_A 68 AVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDN-EGNPLNK 146 (172)
T ss_dssp HTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECT-TSCBSSC
T ss_pred HhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHHHcCCCCcceEEEECC-CCCEEee
Confidence 457789999999999999999986543 112268899999999999985 5999999
Q ss_pred eeCCCC-hHHHHHHHhhhhhcC
Q 025774 61 WCGMVQ-PESLLEDLVPFMDGG 81 (248)
Q Consensus 61 ~~G~~~-~e~l~~~L~~~~~~~ 81 (248)
+.|..+ +++|...|...++.+
T Consensus 147 ~~G~~~~~~~l~~~l~~~l~~~ 168 (172)
T 3f9u_A 147 SYAYDEDISKYINFLQTGLENY 168 (172)
T ss_dssp CBCSCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHh
Confidence 999998 999999998888754
No 15
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.39 E-value=0.00086 Score=48.86 Aligned_cols=71 Identities=20% Similarity=0.118 Sum_probs=58.9
Q ss_pred CCceEEEEEcCC----CceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-Cce
Q 025774 168 SLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAM 242 (248)
Q Consensus 168 ~~~~~i~iRlp~----G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~ 242 (248)
.++++|.||+|+ |+.+.-....++||.+|-.-|... .+.++...+|+.+ .+. + +++.||.+.|+. +++
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k-~gip~~qQrLI~~--GKi--L--~D~~TL~~y~I~~gst 85 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-FGLQENYIKIVIN--KKQ--L--QLGKTLEEQGVAHNVK 85 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-TTCCSTTCEEEET--TEE--C--CTTSBHHHHTCCSSEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHH-HCcCHHHeEEEeC--CeE--C--CCCCcHHHcCCCCCCE
Confidence 568999999999 878999999999999999999886 4677888999854 543 5 567999999998 555
Q ss_pred EEE
Q 025774 243 ISV 245 (248)
Q Consensus 243 v~v 245 (248)
|+|
T Consensus 86 i~v 88 (100)
T 1wju_A 86 AMV 88 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 644
No 16
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=97.35 E-value=0.0018 Score=45.86 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=58.1
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+...+|.||..+|+.+.-.+..++||.+|-.-+.... +.++...+|+.. .+ .+ +++.||.++|+. +++|.+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk--~L--~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GK--QL--EDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TE--EC--CTTCBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhhEEEEEC--Ce--EC--CCcCcHHHCCCCCCCEEEEE
Confidence 4578999999999999999999999999999998764 667777888764 33 25 457999999998 5666654
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.31 E-value=0.0017 Score=43.88 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=54.6
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+|.||.++|+.+.-.+..++||.+|..-+.... +.++...+|... .+. + +++.||.+.|+. +++|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998764 566778888753 442 5 457999999998 5666554
No 18
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.0026 Score=43.67 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=57.3
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+...+|.||.++|+.+.-.+..++||.+|..-+... .+.++...+|... .+. + +++.||.++|+. +++|.+.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~-~~i~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEK-LNVPVRQQRLLFK--GKA--L--ADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--C--CTTSBGGGGTCCSSBCCEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 456889999999998889999999999999999875 3667788888753 443 5 457999999998 5666554
No 19
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=97.27 E-value=0.0023 Score=45.09 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcCceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~~v~v~ 246 (248)
+...+|.||..+|+.+.-.+..++||.+|-..|.... +.++...+|+.. .+ .+ +++.||.++|+.+++|.+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk--~L--~d~~tL~~~~i~g~~i~l~ 74 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GR--VL--QDDKKLQEYNVGGKVIHLV 74 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TE--EC--CTTSBGGGGTCTTEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--Ce--EC--CCCCCHHHcCCCCcEEEEE
Confidence 4578999999999999889999999999999998764 666778888763 33 25 4589999999965666554
No 20
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=97.24 E-value=0.0013 Score=49.62 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCCHHHHHHhhcceEEEEEecCC--hHHHHHHHhcCCCCCceEEEEeCCCCceE--EeeeCCCChHHHHHHHhhh
Q 025774 7 WANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPITGQKM--RSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 7 l~~~~v~~~l~~~fV~w~~d~~~--~eg~~~~~~~~~~~~P~l~ii~~~~g~~l--~~~~G~~~~e~l~~~L~~~ 77 (248)
+.++.+.+.+. ++++...|++. .+...++..|++..+|+++++++ +|..+ .++.|..+.++|...|..+
T Consensus 54 ~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 54 FSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDG-QGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp TTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECT-TSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred cCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEEEEECC-CCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 34456666555 59999999865 56778999999999999999984 58877 7899999999987776655
No 21
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.19 E-value=0.0025 Score=42.96 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=55.0
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEEe
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 247 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~~ 247 (248)
+|.||.++|+.+.-.+..++||.+|...+.... +.++...+|... .+. + +++.||.++|+. +++|.+..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence 588999999999999999999999999998864 556778888753 443 5 347999999998 56666543
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.17 E-value=0.0025 Score=44.14 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
..+|.|+.++|+.+.-.+..++||.+|..-+.... +.++...+|+. ..+. + +++.||.++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 46899999999999999999999999999998864 56778888875 3443 5 457999999998 5666554
No 23
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=97.17 E-value=0.0035 Score=43.51 Aligned_cols=72 Identities=10% Similarity=0.178 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhc--CCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
...+|.||..+|+.+.-.+..++||.+|..-+...+ .+.++...+|+.. .+. + +++.||.++|+. +++|.+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~l 77 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA--GKI--L--SDDVPIRDYRIDEKNFVVV 77 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET--TEE--C--CTTSBGGGGCCCTTSEEEE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC--CEE--C--cCCCCHHHcCCCCCCEEEE
Confidence 467899999999999999999999999999998862 5667788888754 442 5 457999999998 566655
Q ss_pred E
Q 025774 246 T 246 (248)
Q Consensus 246 ~ 246 (248)
.
T Consensus 78 ~ 78 (85)
T 2wyq_A 78 M 78 (85)
T ss_dssp E
T ss_pred E
Confidence 4
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.14 E-value=0.0031 Score=44.05 Aligned_cols=72 Identities=22% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
++..+|.|+.++|+.+.-.+..++||.+|..-+... .+.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~~--Gk~--L--~d~~tL~~~~i~~g~~i~l~ 77 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-QGLPKKQQQLEFQ--GQV--L--QDWLGLGIYGIQDSDTLILS 77 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-TCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHH-hCCChHHEEEEEC--CEE--c--cCCCCHHHCCCCCCCEEEEE
Confidence 346889999999999999999999999999999876 4667888888753 432 5 457999999998 5666554
No 25
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.12 E-value=0.0035 Score=44.82 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=55.4
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhc--CCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+|.||.++|+.+.-.+..++||.+|..-+.... .+.++...+|+.. .+. + +++.||.+.|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~g~~i~l~ 73 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA--GKI--L--NDDTALKEYKIDEKNFVVVM 73 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET--TEE--C--CTTSBGGGGTCCSSSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 588999999999999999999999999998864 4667888888753 443 5 457999999998 5666554
No 26
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=97.12 E-value=0.0036 Score=43.71 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
.....|.|+.++|+.+.-.+..++||.+|-.-+.... +.++...+|+.. .+ .+ +++.||.++|+. +++|.+
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrL~~~--G~--~L--~d~~tL~~~~i~~~~~i~l 81 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GK--QM--NDEKTAADYKILGGSVLHL 81 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEET--TE--EC--CTTSBGGGGTCCTTCEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcCHHHEEEEEC--Ce--EC--CCCCcHHHcCCCCCCEEEE
Confidence 4568999999999999999999999999999998764 666777888763 33 25 458999999998 556654
No 27
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=97.08 E-value=0.005 Score=42.12 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
...|.||.++|+.+.-.+..++||.+|-.-+... .+.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhh-cCCCHHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 4689999999999988999999999999999875 3667788888764 332 5 458999999998 5666554
No 28
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=97.07 E-value=0.0037 Score=42.38 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=54.1
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
.+|.|+. +|+.+.-.+..++||.+|..-+.... +.++...+|.. ..+. + +++.||.+.|+. +++|.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~qrL~~--~gk~--L--~d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIY--SGKI--L--KDDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHh-CCCHHHEEEEE--CCeE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 5788888 99999999999999999999998764 66778888874 3443 5 446999999998 5666654
No 29
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.06 E-value=0.0035 Score=45.01 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+|.||.++|+.+.-.+..++||.+|..-|.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~-gi~~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHT-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 688999999989999999999999999998764 667788888753 443 5 448999999998 5666544
No 30
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.05 E-value=0.0042 Score=44.61 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=61.3
Q ss_pred CCceEEEEEcC---CCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcc---CCCCccccCCCcCCCccccCCc-C
Q 025774 168 SLLCRVGVRLP---DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA---IPGATKSLDYDSKLTFEDSGLA-N 240 (248)
Q Consensus 168 ~~~~~i~iRlp---~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~---~Pr~~~~l~~d~~~tl~d~gl~-~ 240 (248)
.+.++|.|+.| +|..+.++|..+.||+.|-.-+.... +.++...+|... +|.....+ .+.+.||...|+. +
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~-gip~~~q~L~~~~~~~~~~~~~L-~~d~~~L~~y~i~~G 84 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLL-KVPVSELLLSYESSKMPGREIEL-ENDLQPLQFYSVENG 84 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTT-TCCTTTCEEEEECTTSCSCEEEC-CCSSSBSGGGTCCTT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHH-CCChhHeEEEEEcCCCCceeecc-CCCcccHhhcCCCCC
Confidence 45788999876 68899999999999999999998754 667778888643 55443224 4789999999998 6
Q ss_pred ceEEEEe
Q 025774 241 AMISVTW 247 (248)
Q Consensus 241 ~~v~v~~ 247 (248)
..|+|.+
T Consensus 85 ~~I~V~d 91 (97)
T 1wjn_A 85 DCLLVRW 91 (97)
T ss_dssp CEEEEEC
T ss_pred CEEEEEe
Confidence 7788876
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=97.04 E-value=0.004 Score=43.83 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
..+|.||.++|+.+.-.+..++||.+|..-+... .+.++...+|+.. .+. + ++++||.++|+. +++|.+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--Gk~--L--~D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHH-TCSCTTTEEEESS--SSC--C--CTTSBHHHHHCSTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHH-hCCChhHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999875 4667888888753 443 5 457999999998 5666554
No 32
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.03 E-value=0.0035 Score=45.58 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=59.9
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
..+...|-|+.++|+.+.-....++||.+|..-|... .+.++...+|+.. .+. + +++.||.+.|+. .++|.+
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k-~Gip~~qQrLi~~--Gk~--L--~D~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-TGTRWNKIVLKKW--YTI--F--KDHVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-HCCCGGGCEEEET--TEE--C--CSSCBHHHHTCCTTEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCCHHHEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEE
Confidence 3457899999999999999999999999999999886 4677888888754 553 5 458999999998 466666
Q ss_pred Ee
Q 025774 246 TW 247 (248)
Q Consensus 246 ~~ 247 (248)
.+
T Consensus 98 ~~ 99 (100)
T 1uh6_A 98 YY 99 (100)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 33
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=97.01 E-value=0.0034 Score=45.13 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+....|.|+..+|+.+.-....++||..|...+.... +.++...+|+.. .+. | +.+.||+++|+. +++|.+.
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~-gip~~~qrLif~--Gk~--L--~d~~tl~dy~i~~g~~I~l~ 91 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY 91 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTCEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCChhhEEEEEC--CeE--c--CCCCCHHHCCCCCCCEEEEE
Confidence 4568999999999999999999999999999998764 667788888764 443 5 457999999998 5666543
No 34
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.96 E-value=0.0056 Score=42.85 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcCceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~~v~v~ 246 (248)
+...+|.||..+|+.+.-.+..++||.+|-..+.... +.++...+|+.. .+ .+ +++.||.++|+.+++|.+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk--~L--~D~~tL~~~~i~g~~i~lv 86 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GR--VL--QDDKKLQEYNVGGKVIHLV 86 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TE--EC--CTTSBGGGGTCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CE--EC--CCCCcHHHcCCCCcEEEEE
Confidence 3468999999999998889999999999999998764 667788888753 33 25 4489999999966666654
No 35
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0041 Score=44.73 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+...+|.||..+|+.+.-.+..+++|.+|-.-|.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBSGGGTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHh-CCChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 3468999999999999999999999999999998764 567788888753 442 5 568999999998 4555554
No 36
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=96.91 E-value=0.0085 Score=44.12 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=51.4
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.++.+...|++..+...++..|++..+|+++++++ +|..+.++.|..+.++|...|...+..
T Consensus 57 ~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~-~G~~~~~~~G~~~~~~l~~~l~~~~~~ 118 (126)
T 2l57_A 57 GKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDK-EGNKFYVHQGLMRKNNIETILNSLGVK 118 (126)
T ss_dssp SSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHHHCCC
T ss_pred CCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECC-CCCEEEEecCCCCHHHHHHHHHHHhcc
Confidence 57899999944455667899999999999999985 688899999999999988777776554
No 37
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.78 E-value=0.0077 Score=42.79 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=55.1
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
.+|.||..+|+.+.-.+..++||.+|-.-|.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 3688999999999999999999999999998864 667788888753 442 5 457899999998 5666554
No 38
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.77 E-value=0.0055 Score=42.34 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
..+|.||.++|+.+.-.+..++||.+|..-+.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~ip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--BEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEEEE
Confidence 46899999999999999999999999999998864 667788888764 332 5 457899999998 5666554
No 39
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=96.77 E-value=0.0089 Score=42.61 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=49.3
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+..++.|...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+++...|...+.
T Consensus 51 ~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 51 YEESFGFYYVDVEEE--KTLFQRFSLKGVPQILYF--KDGEYKGKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp TTTTSEEEEEETTTC--HHHHHHTTCCSSCEEEEE--ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCceEEEEEECCcC--hhHHHhcCCCcCCEEEEE--ECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence 334688888888654 367899999999999998 468899999999999999888877654
No 40
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.75 E-value=0.0096 Score=40.50 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCceE-EEe-eCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRM-QRN-FLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~-~r~-F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
..+|.||.++|+.+ .-. +..++||.+|-.-+.... +.++...+|... .+. + +++.||.+.|+. +++|.+.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~-gip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELF-HVEPGLQRLFYR--GKQ--M--EDGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 46789999999875 677 999999999999998764 667788888753 442 5 457999999998 5666654
Q ss_pred e
Q 025774 247 W 247 (248)
Q Consensus 247 ~ 247 (248)
.
T Consensus 75 ~ 75 (78)
T 2faz_A 75 V 75 (78)
T ss_dssp E
T ss_pred E
Confidence 3
No 41
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=96.71 E-value=0.0099 Score=42.56 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=49.0
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+..++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.++|...|...+.
T Consensus 54 ~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 54 YSDRLKVVKLEIDPN--PTTVKKYKVEGVPALRLV--KGEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp TTTTCEEEEEESTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred hCCcEEEEEEEcCCC--HHHHHHcCCCceeEEEEE--cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 334688888888653 367889999999999999 469999999999999999888877654
No 42
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.70 E-value=0.016 Score=42.22 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=56.0
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
++...+|.||..+|+ +.-.+..++||.+|...|.... +.+....+|+.. .+. | ++++||.++|+. +++|.+
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gi~~g~~i~l 85 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHL 85 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHH-TCCTTTEEEEET--TEE--C--CTTSCHHHHTCCTTEEEEE
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEE
Confidence 356789999999996 6888999999999999998764 566788888754 332 5 457999999998 455555
Q ss_pred E
Q 025774 246 T 246 (248)
Q Consensus 246 ~ 246 (248)
.
T Consensus 86 ~ 86 (106)
T 1wx7_A 86 V 86 (106)
T ss_dssp E
T ss_pred E
Confidence 4
No 43
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.69 E-value=0.019 Score=43.28 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=56.3
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
+....+|.|+.. |+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | ++++||.++|+.+ ++|.+
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~dygI~~gstI~l 100 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRF-KSQTDQLVLIFA--GKI--L--KDQDTLIQHGIHDGLTVHL 100 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHH-CSCSSSEEEEET--TEE--E--STTSCGGGTTCSSSEEEEE
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHH-CcCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 345788999998 8899999999999999999998764 566788888753 332 5 4579999999984 55544
Q ss_pred E
Q 025774 246 T 246 (248)
Q Consensus 246 ~ 246 (248)
.
T Consensus 101 v 101 (125)
T 1j8c_A 101 V 101 (125)
T ss_dssp E
T ss_pred E
Confidence 3
No 44
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=96.66 E-value=0.011 Score=41.72 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=46.7
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
+..++.+...|++... .++..|++..+|++.++ .+|..+.++.|..+.+++...|...
T Consensus 49 ~~~~~~~~~v~~~~~~--~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 49 FAGKVTVAKVNIDDNP--ETPNAYQVRSIPTLMLV--RDGKVIDKKVGALPKSQLKAWVESA 106 (107)
T ss_dssp HTTSEEEEEEETTTCC--HHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred hCCcEEEEEEECCCCH--HHHHhcCCCccCEEEEE--eCCEEEEEecCCCCHHHHHHHHHhc
Confidence 3447899999986543 57889999999999999 4699999999999999887766543
No 45
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.65 E-value=0.015 Score=42.73 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
...+|.|+.++|+.+.-.+..++||.+|..-+.... +.++...+|+.. .+. + +.++||.++|+. +++|.+.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCTTTEEEEET--TEE--C--CSSCBTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCcccEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 468899999999999999999999999999998764 567788888763 332 5 458999999998 5666554
No 46
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.64 E-value=0.01 Score=40.51 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
...|.|+..+|+.+.-....++||..|.+-+.... +.++...+|... .+. + +++.||+++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~-gi~~~~qrL~~~--G~~--L--~d~~tl~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY 73 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CCCcccEEEEEC--CEE--e--CCCCCHHHcCCCCCCEEEEE
Confidence 46789999999999999999999999999998763 666778888653 443 5 457999999998 4555443
No 47
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.62 E-value=0.016 Score=42.58 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=56.9
Q ss_pred CceEEEEEcC---CCceEEEeeCC-CCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceE
Q 025774 169 LLCRVGVRLP---DGRRMQRNFLR-TDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI 243 (248)
Q Consensus 169 ~~~~i~iRlp---~G~r~~r~F~~-~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v 243 (248)
+.++|.|+.| +|+.+.-.+.. ++||.+|-.-|... .+.++...+|+.. .+. + +++.||.+.|+. +++|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-IQIPANKQKLSGK--AGF--L--KDNMSLAHYNVGAGEIL 98 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-TTCCTTTSEEECS--SSB--C--CTTSBTTTTTCSSSCEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCcHHHCCCCCCCEE
Confidence 4589999999 89999999997 99999999999876 4667788888763 332 4 458999999998 5666
Q ss_pred EEE
Q 025774 244 SVT 246 (248)
Q Consensus 244 ~v~ 246 (248)
.+.
T Consensus 99 ~l~ 101 (111)
T 1we6_A 99 TLS 101 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 48
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=96.61 E-value=0.0084 Score=46.10 Aligned_cols=58 Identities=10% Similarity=0.159 Sum_probs=50.5
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.+.|+.+|++ +...++..|++.+.|+++++ ++|+.+.++.|..+.+++...|...+++
T Consensus 67 ~v~~~KVdvD--e~~~la~~ygV~siPTlilF--kdG~~v~~~vG~~~k~~l~~~l~~~l~~ 124 (137)
T 2qsi_A 67 RLVAAEVAAE--AERGLMARFGVAVCPSLAVV--QPERTLGVIAKIQDWSSYLAQIGAMLAE 124 (137)
T ss_dssp TEEEEEECGG--GHHHHHHHHTCCSSSEEEEE--ECCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECC--CCHHHHHHcCCccCCEEEEE--ECCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 5788888874 56789999999999999999 5799999999999999998888877754
No 49
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=96.59 E-value=0.0091 Score=42.24 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=47.4
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
..++.+...|++. ...++..|++..+|++.++ .+|..+.++.|..+.++|...|...+
T Consensus 51 ~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 51 KGKAVFGRLNVDE--NQKIADKYSVLNIPTTLIF--VNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp TTTSEEEEEETTT--CHHHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred CCCceEEEEcccc--CHHHHHhcCcccCCEEEEE--cCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 3467888888754 3467899999999999999 46999999999999999988777654
No 50
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=96.59 E-value=0.011 Score=41.85 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=47.4
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
+..++.+...|++... .++..|++..+|++.++ .+|..+.++.|..+.++|...|...+
T Consensus 49 ~~~~~~~~~v~~~~~~--~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 49 YQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLF--KNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp TTTTEEEEEEETTTCT--THHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred hCCCcEEEEEECCCCH--HHHHHcCCcccCEEEEE--eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 3346889898886533 57789999999999998 46999999999999998877776654
No 51
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=96.57 E-value=0.011 Score=42.70 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=49.5
Q ss_pred HHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 14 QTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 14 ~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
+-+..++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.++|...|...+..
T Consensus 44 ~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 106 (112)
T 2voc_A 44 QEMGDKLKIVKIDVDEN--QETAGKYGVMSIPTLLVL--KDGEVVETSVGFKPKEALQELVNKHLLE 106 (112)
T ss_dssp HHHTTTCEEEEEETTTC--CSHHHHTTCCSBSEEEEE--ETTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred HHhCCCcEEEEEECCCC--HHHHHHcCCCcccEEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 33445789999998653 357889999999999999 4699999999999999887766665543
No 52
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.57 E-value=0.017 Score=41.26 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
++.+.|-|+.++|+.+.-.+..+|||.+|-.-|... .|.++..-+|... .+. + +++.||+|.|+.+ ++|.+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k-~Gip~~qQrLif~--Gk~--L--kD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQ-IGTQPNKIVLQKG--GSV--L--KDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHH-hCCCHHHEEEEeC--CEE--c--cCcCCHHHcCCCCCCEEEE
Confidence 568999999999999999999999999999999876 3667888899764 343 5 5589999999984 55544
No 53
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=96.56 E-value=0.013 Score=41.29 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=47.5
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
..++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+++...|...+.
T Consensus 48 ~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l~ 106 (109)
T 2yzu_A 48 EGKLLVAKLDVDEN--PKTAMRYRVMSIPTVILF--KDGQPVEVLVGAQPKRNYQAKIEKHLP 106 (109)
T ss_dssp BTTBEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred hCceEEEEEECCCC--HhHHHhCCCCcCCEEEEE--eCCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence 34689999998654 357889999999999998 468889999999999988777766543
No 54
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=96.55 E-value=0.01 Score=41.91 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=46.2
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
..++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+++...|...+
T Consensus 47 ~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 47 ADKVTVAKLNVDEN--PETTSQFGIMSIPTLILF--KGGRPVKQLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp TTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred cCCcEEEEEECcCC--HHHHHHcCCccccEEEEE--eCCeEEEEEecCCCHHHHHHHHHHHh
Confidence 34588888888643 467889999999999999 46888999999999988876665543
No 55
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.55 E-value=0.023 Score=39.64 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCceEEEEEcCCC-ceEEE-eeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEE
Q 025774 168 SLLCRVGVRLPDG-RRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS 244 (248)
Q Consensus 168 ~~~~~i~iRlp~G-~r~~r-~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~ 244 (248)
.....|.||.++| +.+.- .+..++||.+|..-|... .+.++...+|+.. .+. + +++.||.++|+. +++|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-~gip~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~ 77 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-FDVRPECQRLFYR--GKQ--L--ENGYTLFDYDVGLNDIIQ 77 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-SCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTCEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-HCcChhhEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEE
Confidence 3568899999999 67877 599999999999999876 4667888888764 332 5 457999999998 56665
Q ss_pred EE
Q 025774 245 VT 246 (248)
Q Consensus 245 v~ 246 (248)
+.
T Consensus 78 l~ 79 (89)
T 1wy8_A 78 LL 79 (89)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 56
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.55 E-value=0.013 Score=41.21 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=54.3
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+|.||..+|+.+.-.+..++||.+|-.-+.... +.++...+|+.. .+ .+ +++.||.++|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk--~L--~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GK--QM--NDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TE--EC--CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChhHEEEEEC--Ce--EC--CCCCcHHHcCCCCCCEEEEE
Confidence 588999999999999999999999999998764 567778888763 33 25 458999999998 5566553
No 57
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.53 E-value=0.017 Score=43.81 Aligned_cols=77 Identities=10% Similarity=0.158 Sum_probs=58.1
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCC-------------------------cccc-
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGA-------------------------TKSL- 225 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~-------------------------~~~l- 225 (248)
.|.||+|||...+-+-..+.+|..+...|...+.-.....|.|+...|.. ...+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 49999999999999999999999999998887654445678988654421 0011
Q ss_pred ------CCCcCCCccccCCc-CceEEEEeC
Q 025774 226 ------DYDSKLTFEDSGLA-NAMISVTWE 248 (248)
Q Consensus 226 ------~~d~~~tl~d~gl~-~~~v~v~~~ 248 (248)
..|.++||.+-|+. +++|+++++
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 12458999999998 788887763
No 58
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=96.53 E-value=0.015 Score=42.43 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=47.0
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
.++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.++|...|...+
T Consensus 62 ~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 62 GKVVMAKVDIDDH--TDLAIEYEVSAVPTVLAM--KNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp TSSEEEEEETTTT--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCC--HHHHHHcCCCcccEEEEE--eCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 4688999988653 368899999999999988 46998999999999998877776654
No 59
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.52 E-value=0.011 Score=42.03 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
....+|.||..+|+.+.-.+..+++|.+|..-+.... +...+|+.. .+. | .|.+.||.++|+. +++|.+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~----~~~qrLi~~--Gk~--L-~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ----ESQMKLIYQ--GRL--L-QDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST----TTTCEEEET--TEE--C-CCSSCBTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC----cCcEEEEEC--CEE--c-cCCcCCHHHcCCCCCCEEEEE
Confidence 3468899999999999999999999999999987652 667778643 443 5 2444999999998 4556554
No 60
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=96.52 E-value=0.016 Score=41.91 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=55.7
Q ss_pred CCCceEEEEEcCCCceEEE--eeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCC-c-Cce
Q 025774 167 RSLLCRVGVRLPDGRRMQR--NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL-A-NAM 242 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r--~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl-~-~~~ 242 (248)
.++..+|-|+..+|+.+.- .+..++||..|-.-+.....+.++...+|+.. ++. | +.+.||+++|+ . +++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~g~t 89 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANST 89 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET--TEE--E--CTTCBGGGSCCBTTBCE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC--CEE--C--cCcCCHHHcCcCCCCCE
Confidence 3557899999999987655 56699999999999944455777888898764 443 5 45799999999 6 666
Q ss_pred EEEE
Q 025774 243 ISVT 246 (248)
Q Consensus 243 v~v~ 246 (248)
|++.
T Consensus 90 i~lm 93 (98)
T 4a20_A 90 ITVM 93 (98)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 61
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=96.51 E-value=0.0034 Score=46.69 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=45.2
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
+..++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+++...|...
T Consensus 64 ~~~~~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 64 YQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLF--KNGEVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp ----CEEEEEETTSC--TTTGGGGTCCBSSEEEEE--ESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred hcCCeEEEEEECCCC--HHHHHHcCCCccCEEEEE--ECCEEEEEEeCCCCHHHHHHHHHHH
Confidence 344688999998754 357889999999999998 4699999999999999887776654
No 62
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=96.50 E-value=0.0067 Score=45.15 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCHHHHHHhhcceEEEEEecCC-hHHHHHHHhcCC---CCCceEEEEeCCCCceEEeeeC-------CCChHHHHHHHh
Q 025774 7 WANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKL---DSIPVVLVVDPITGQKMRSWCG-------MVQPESLLEDLV 75 (248)
Q Consensus 7 l~~~~v~~~l~~~fV~w~~d~~~-~eg~~~~~~~~~---~~~P~l~ii~~~~g~~l~~~~G-------~~~~e~l~~~L~ 75 (248)
|.+..+.+.++.++.+...|++. .+...++..|++ ..+|+++++++ +|..+.+..| ..+.+++...|.
T Consensus 51 l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~ 129 (133)
T 3fk8_A 51 LRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFA 129 (133)
T ss_dssp HTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHH
T ss_pred hCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECC-CCCEEEEecCCcccccccCCHHHHHHHHH
Confidence 33456666776789999999943 345678999999 99999999984 5899998888 667776655554
Q ss_pred h
Q 025774 76 P 76 (248)
Q Consensus 76 ~ 76 (248)
.
T Consensus 130 ~ 130 (133)
T 3fk8_A 130 K 130 (133)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=96.50 E-value=0.013 Score=43.37 Aligned_cols=60 Identities=10% Similarity=0.203 Sum_probs=48.2
Q ss_pred HHHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 13 SQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 13 ~~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
.+-+..++.+...|++.. ..++..|++..+|+++++ .+|..+.++.|..+.+++...|.+
T Consensus 68 ~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~ 127 (128)
T 3ul3_B 68 QKYYGKRIYLLKVDLDKN--ESLARKFSVKSLPTIILL--KNKTMLARKDHFVSSNDLIALIKK 127 (128)
T ss_dssp HHHHGGGEEEEEEEGGGC--HHHHHHTTCCSSSEEEEE--ETTEEEEEESSCCCHHHHHHHHTT
T ss_pred HHHhcCCeEEEEEECCCC--HHHHHHcCCCCcCEEEEE--ECCEEEEEecCCCCHHHHHHHHHh
Confidence 334445789999998654 378899999999999999 368999999999999988776643
No 64
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=96.49 E-value=0.015 Score=42.85 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
...+|.||..+|+.+.-.+..++||..|-..+.... +.++...+|+.. .+. + +.+.||.++|+. +++|.+.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CCChHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 357899999999999999999999999999998864 667778888753 442 5 457899999998 5666554
No 65
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.49 E-value=0.01 Score=42.29 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=55.1
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
++...+|.|+.. |+.+.-.+..++||.+|..-|.... +.++...+|+.. .+. + +++.||.++|+.+ ++|.+
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l 85 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYL-HCNADRLVLIFT--GKI--L--RDQDILSQRGILDGSTVHV 85 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHT-CSCTTTBCCEET--TEE--C--CTTSCHHHHTCCTTEEEEC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CEE--C--CCcCCHHHCCCCCCCEEEE
Confidence 356788999998 8899999999999999999998863 556777777653 332 5 4579999999985 55544
No 66
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=96.48 E-value=0.017 Score=40.89 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=46.4
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
..++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+++...|...+
T Consensus 49 ~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 49 KDKLKCVKLNTDES--PNVASEYGIRSIPTIMVF--KGGKKCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp TTTCEEEEEETTTC--HHHHHHHTCCSSCEEEEE--SSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred CCceEEEEEECCCC--HHHHHHCCCCcCCEEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 34688888888643 357889999999998877 46899999999999998877776654
No 67
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.45 E-value=0.019 Score=40.94 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v~ 246 (248)
.....|.||.++| .+.-.+..++||.+|..-|... .+.++...+|+. ..+. +. |.+.||.++|+.+ ++|.+.
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L~-D~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIV-ENTPIKRMQLYY--SGIE--LA-DDYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHH-SSSCTTTEEEEE--TTEE--EC-CTTSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCEE--CC-CCcccHHHCCCCCCCEEEEE
Confidence 3458899999999 7888999999999999999886 466788888874 3543 52 4339999999984 555443
No 68
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.44 E-value=0.024 Score=40.91 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
...+|.|+.. |+.+.-.+..++||.+|..-|.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~g~~I~l~ 94 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRF-KSHTDQLVLIFA--GKI--L--KDQDTLSQHGIHDGLTVHLV 94 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--E--CTTCCTGGGTCCTTCEEEEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEEE
Confidence 4688999998 8888899999999999999998764 666778888653 443 5 457999999998 5555554
No 69
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.43 E-value=0.017 Score=40.52 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=55.3
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
..|-++..+|+.+.-.+..++||.+|..-+.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 79 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 79 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBSGGGTCCTTCEEEEE
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 5788999999999999999999999999998764 567788888753 443 5 347999999998 4555553
No 70
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=96.41 E-value=0.013 Score=41.76 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=43.0
Q ss_pred HHHHHhhc--ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 11 AVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 11 ~v~~~l~~--~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
.+.++.+. ++.|...|++... .++..|++..+|++.++. +|..+.++.|..+.++|...|...+
T Consensus 39 ~~~~~~~~~~~~~~~~vd~~~~~--~l~~~~~v~~~Pt~~~~~--~G~~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 39 KVNYVLENYNYVEKIEILLQDMQ--EIAGRYAVFTGPTVLLFY--NGKEILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp HHHHHHHTCTTEEEEEEEECCC-----------CCCCEEEEEE--TTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCceEEEEECCCCH--HHHHhcCCCCCCEEEEEe--CCeEEEEEeCCcCHHHHHHHHHHhh
Confidence 34444443 6888888886443 678899999999999994 6999999999999999988777654
No 71
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=96.38 E-value=0.018 Score=41.14 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=47.1
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+++...|...+.
T Consensus 54 ~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 54 DKIEIVKLNIDEN--PGTAAKYGVMSIPTLNVY--QGGEVAKTIVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp TTCEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred CCeEEEEEEcCCC--HHHHHhCCCCcccEEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence 4688888888653 457889999999998877 468999999999999988877766653
No 72
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=96.38 E-value=0.023 Score=42.64 Aligned_cols=58 Identities=21% Similarity=0.434 Sum_probs=48.4
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.++.|...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.++|...|...++
T Consensus 81 ~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 81 GRLKVVKVNVDEH--PGLAARYGVRSVPTLVLF--RRGAPVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp TTEEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred CceEEEEEECCCC--HHHHHHCCCCccCEEEEE--eCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence 4689999998653 468899999999999988 469999999999999988888777664
No 73
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=96.37 E-value=0.022 Score=43.24 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=50.8
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..++.|...|++.. ..++..|++..+|+++++. +|..+.++.|..+.++|...|...+...
T Consensus 85 ~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 145 (148)
T 3p2a_A 85 AGKVRFVKVNTEAE--PALSTRFRIRSIPTIMLYR--NGKMIDMLNGAVPKAPFDNWLDEQLSRD 145 (148)
T ss_dssp TTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred CCceEEEEEECcCC--HHHHHHCCCCccCEEEEEE--CCeEEEEEeCCCCHHHHHHHHHHHhccc
Confidence 34688888888654 3678999999999998883 6999999999999999998888887753
No 74
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=96.34 E-value=0.006 Score=48.77 Aligned_cols=74 Identities=12% Similarity=0.197 Sum_probs=51.2
Q ss_pred cccCCCHHHHHHhhcceEEEEEecCChHHHHHHHhc--------CCCCCceEEEEeCCCCceEEeee-----CCCChHHH
Q 025774 4 RDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY--------KLDSIPVVLVVDPITGQKMRSWC-----GMVQPESL 70 (248)
Q Consensus 4 r~vl~~~~v~~~l~~~fV~w~~d~~~~eg~~~~~~~--------~~~~~P~l~ii~~~~g~~l~~~~-----G~~~~e~l 70 (248)
..+|.++.|.++++.+||+...|.+... .++..| ++..+|++++++|. |..+.... |..+.+.|
T Consensus 59 ~~~f~~~~va~~l~~~fv~ikVD~de~~--~l~~~y~~~~q~~~gv~g~Pt~v~l~~d-G~~v~~~ty~p~~~~~~~~~f 135 (173)
T 3ira_A 59 HESFEDEEVAGLMNEAFVSIKVDREERP--DIDNIYMTVCQIILGRGGWPLNIIMTPG-KKPFFAGTYIPKNTRFNQIGM 135 (173)
T ss_dssp HHTTTCHHHHHHHHHHCEEEEEETTTCH--HHHHHHHHHHHHHHSCCCSSEEEEECTT-SCEEEEESSCCSSCBTTBCCH
T ss_pred ccccCCHHHHHHHHhcCceeeeCCcccC--cHHHHHHHHHHHHcCCCCCcceeeECCC-CCceeeeeeCCCCcCCCCCCH
Confidence 3488999999999999999999997432 233334 89999999999874 88766432 12233445
Q ss_pred HHHHhhhhhc
Q 025774 71 LEDLVPFMDG 80 (248)
Q Consensus 71 ~~~L~~~~~~ 80 (248)
...|..+.+.
T Consensus 136 ~~~L~~v~~~ 145 (173)
T 3ira_A 136 LELVPRIKEI 145 (173)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 75
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=96.33 E-value=0.011 Score=44.16 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=47.7
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
+..++.|...|++... .++..|++..+|++.++ .+|..+.++.|..+.++|...|...+
T Consensus 69 ~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 69 YQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLF--KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp TTTTEEEEEEETTTCC--TTSGGGTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred hcCCeEEEEEECCCCH--HHHHHcCCCccCEEEEE--eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 3447889999886433 57789999999999998 46999999999999998887776654
No 76
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=96.29 E-value=0.024 Score=41.89 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=56.1
Q ss_pred CceEEEEEcCC----------CceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCC
Q 025774 169 LLCRVGVRLPD----------GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 238 (248)
Q Consensus 169 ~~~~i~iRlp~----------G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl 238 (248)
+.++|.|++|+ |+.+.-.+..++||.+|-.-|... .+.++...+|+.. .+. + +++.||.+.|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~i 96 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNM 96 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHH-SSCCTTTEEEEET--TEE--E--CTTSBHHHHTC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHH-HCCChHHEEEEEC--CEE--C--CCCCCHHHCCC
Confidence 46899999995 778888999999999999999875 4667788888753 432 5 45799999999
Q ss_pred c-CceEEEE
Q 025774 239 A-NAMISVT 246 (248)
Q Consensus 239 ~-~~~v~v~ 246 (248)
. +++|.+.
T Consensus 97 ~~g~~i~lv 105 (115)
T 1we7_A 97 ASGAVIHLA 105 (115)
T ss_dssp CSSCEEEEE
T ss_pred CCCCEEEEE
Confidence 8 5666554
No 77
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=96.29 E-value=0.021 Score=40.04 Aligned_cols=58 Identities=24% Similarity=0.447 Sum_probs=46.0
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
+..++.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+++...|...
T Consensus 47 ~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 47 YSGKIAVYKLNTDEA--PGIATQYNIRSIPTVLFF--KNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp TTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred hcCceEEEEEcCcch--HHHHHhCCCCcccEEEEE--eCCeEEEEEecCCCHHHHHHHHHhh
Confidence 334688888888643 467899999999998777 3689999999999999887776654
No 78
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=96.29 E-value=0.027 Score=39.51 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=46.5
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
+..++.+...|++.. ..++..|++..+|++.++. +|..+.++.|..+.+++...|...
T Consensus 48 ~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~--~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 48 YEGKADILKLDVDEN--PSTAAKYEVMSIPTLIVFK--DGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp TTTTCEEEEEETTTC--HHHHHHTTCCSBSEEEEEE--TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred hcCCcEEEEEECCcC--HHHHHhCCCcccCEEEEEe--CCeEEEEEeCCCCHHHHHHHHHHh
Confidence 334588888888643 4578999999999999884 699999999999999887776654
No 79
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.019 Score=40.53 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=55.2
Q ss_pred eEEEEEcCCCceEEEe--eCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCC--cCceEEEE
Q 025774 171 CRVGVRLPDGRRMQRN--FLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL--ANAMISVT 246 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~--F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl--~~~~v~v~ 246 (248)
..|-||..+|+.+.-. +..++||..|-.-+.+...|.++...+|+.. .+. + +++.||+++|+ .+++|.|.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET--TEE--C--CTTCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC--CEE--C--cCcCCHHHcCCCCCCCEEEEE
Confidence 4688999999877765 5599999999999933356778889999864 443 5 45799999999 36777775
Q ss_pred e
Q 025774 247 W 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 76 ~ 76 (87)
T 2lxa_A 76 I 76 (87)
T ss_dssp E
T ss_pred c
Confidence 4
No 80
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=96.26 E-value=0.032 Score=39.75 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=56.6
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+..+.|.|+-.+|+.+..+...+++++.|++...... +.++..++|... .+. + +.+.|.+++++. +.+|-|.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHh-CCCccceEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4578899998999999999999999999999876653 556677887654 433 5 567899999998 5666555
Q ss_pred e
Q 025774 247 W 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 88 ~ 88 (93)
T 2d07_B 88 Q 88 (93)
T ss_dssp E
T ss_pred e
Confidence 4
No 81
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=96.25 E-value=0.014 Score=42.27 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCCc--eEEEeeCCCCchHHHHHHHHhhcCCCC-CcCeEEEccCCCCccccCCCcCCCcccc--CCcC-c
Q 025774 168 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSE-MKPFRLTHAIPGATKSLDYDSKLTFEDS--GLAN-A 241 (248)
Q Consensus 168 ~~~~~i~iRlp~G~--r~~r~F~~~~~l~~l~~fv~~~~~~~~-~~~f~L~~~~Pr~~~~l~~d~~~tl~d~--gl~~-~ 241 (248)
+..+.|.||.++|+ .+.-....++||..|-.-|...+++.+ +...+|+.. .+. | +++.||.+. |+.+ +
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~--Gk~--L--~D~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS--GRL--L--PDHLQLKDILRKQDEYH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET--TEE--E--CTTSBTHHHHTTTCSEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC--CEE--C--CCCCCHHHHhcCCCCCC
Confidence 45689999999998 455556999999999999988655544 377888753 443 5 457999999 9985 4
Q ss_pred eEEE
Q 025774 242 MISV 245 (248)
Q Consensus 242 ~v~v 245 (248)
+|.+
T Consensus 95 tihL 98 (99)
T 2kdb_A 95 MVHL 98 (99)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 82
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.25 E-value=0.027 Score=40.63 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+...+|.|+..+|+ +.-.+..++||.+|..-|.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBHHHHTCCTTCEEEEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 45789999999996 6788999999999999998764 666778888753 442 5 457999999998 5566554
No 83
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.017 Score=42.20 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=54.2
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
.+|.||..+|+.+.-.+..++||.+|-..|... .+.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQS-ISCEESQIKLIYS--GKV--L--QDSKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHT-TTSCGGGCEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCChhhEEEEEC--CEE--C--CCcCCHHHcCCCCCCEEEEE
Confidence 468899999999999999999999999999875 4666777888753 332 5 448999999998 5666554
No 84
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=96.23 E-value=0.024 Score=42.37 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=47.8
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+..++.++..|++.. ..++..|++..+|+++++++ .|..+ ...|..+.++|...|...+.
T Consensus 80 ~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~~-~g~~~-~~~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 80 YAGKIYIYKVNVDKE--PELARDFGIQSIPTIWFVPM-KGEPQ-VNMGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp TTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEECS-SSCCE-EEESCCCHHHHHHHHHHTTC
T ss_pred hcCceEEEEEECCCC--HHHHHHcCCCCcCEEEEEeC-CCCEE-EEeCCCCHHHHHHHHHHHHc
Confidence 344789999998654 46889999999999999974 46665 78999999999887776654
No 85
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=96.20 E-value=0.011 Score=45.51 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=48.8
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 20 FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 20 fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
+.|..+|++ +...++..|++.++|+++++ ++|+.+.++.|..+.+++...|...+..
T Consensus 70 v~~~KVdvD--e~~~lA~~ygV~sIPTlilF--k~G~~v~~~~G~~~k~~l~~~i~~~l~~ 126 (140)
T 2qgv_A 70 WQVAIADLE--QSEAIGDRFGAFRFPATLVF--TGGNYRGVLNGIHPWAELINLMRGLVEP 126 (140)
T ss_dssp CEEEECCHH--HHHHHHHHHTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred EEEEEEECC--CCHHHHHHcCCccCCEEEEE--ECCEEEEEEecCCCHHHHHHHHHHHhcC
Confidence 778877774 66789999999999999988 5799999999999999998888887743
No 86
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=96.18 E-value=0.034 Score=39.79 Aligned_cols=76 Identities=8% Similarity=0.030 Sum_probs=58.3
Q ss_pred CCceEEEEEcCCCc--eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCc-cccCCCcCCCccccCCcC-ceE
Q 025774 168 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGAT-KSLDYDSKLTFEDSGLAN-AMI 243 (248)
Q Consensus 168 ~~~~~i~iRlp~G~--r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~-~~l~~d~~~tl~d~gl~~-~~v 243 (248)
++.++|.|+.++++ .+.++|..++||..|-.-|... .|.++..-+|....+.+. ..+ .++++||.+.|+.+ ++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-~GiP~~~QrL~~~~~g~~~~~L-~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-TGGCAGTMKVQVFKGDTCVSTM-DNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-HCSCTTTEEEEEEETTEEEEEC-CCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-HCcCHHHeEEEEecCCccccee-CCCCCCHhHCCcCCCCEE
Confidence 56889999998775 7999999999999999999885 467788888876543321 013 36789999999984 555
Q ss_pred EE
Q 025774 244 SV 245 (248)
Q Consensus 244 ~v 245 (248)
.+
T Consensus 91 hl 92 (95)
T 2kjr_A 91 HV 92 (95)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 87
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.17 E-value=0.023 Score=44.91 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=57.2
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
++....|.|+..+|+.+.-....++||.+|-.-|... .+.++...+|+.. .+. + +++.||.++|+. +++|.+
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gip~~~QrL~~~--g~~--L--~d~~tL~~~~i~~~~~l~l 89 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHL 89 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcChHHEEEEEC--Ccc--c--cccCCHhHcCCcccceeee
Confidence 3456899999999999999999999999999999875 3667778888753 332 5 558999999998 566655
Q ss_pred E
Q 025774 246 T 246 (248)
Q Consensus 246 ~ 246 (248)
.
T Consensus 90 ~ 90 (172)
T 3u30_A 90 V 90 (172)
T ss_dssp E
T ss_pred e
Confidence 3
No 88
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=96.15 E-value=0.034 Score=38.62 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=46.1
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 20 FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 20 fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+.+...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+++...|...+.
T Consensus 48 ~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 48 VGFGKLNSDEN--PDIAARYGVMSLPTVIFF--KDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp SEEEEEETTTC--HHHHHHTTCCSSCEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred ceEEEEECCCC--HHHHHhCCccccCEEEEE--ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 78888887643 467889999999999988 468989999999999988887776654
No 89
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=96.14 E-value=0.02 Score=43.16 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=52.1
Q ss_pred HHHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 13 SQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 13 ~~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.+-+..++.|...|++.. ..++..|++..+|+++++ .+|..+.++.|..+.++|...|...+..
T Consensus 50 ~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 113 (140)
T 3hz4_A 50 AKEYGSSAVFGRINIATN--PWTAEKYGVQGTPTFKFF--CHGRPVWEQVGQIYPSILKNAVRDMLQH 113 (140)
T ss_dssp HHHHTTTSEEEEEETTTC--HHHHHHHTCCEESEEEEE--ETTEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHhCCceEEEEEECCcC--HhHHHHCCCCcCCEEEEE--eCCcEEEEEcCCCCHHHHHHHHHHHhcc
Confidence 333445688888988654 467889999999998888 4689999999999999998888888764
No 90
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.09 E-value=0.062 Score=39.15 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
...+.|.|+-.+|+.+..+...+++|..|++...... +.++..++|+.. .+. + +.+.|.+++++. +.+|-|.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHH-TCCTTTSCEESS--SSB--C--CTTSCTTTTTCCTTEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4568899999999999999999999999999876654 445667777653 443 5 567899999998 5555554
No 91
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=96.08 E-value=0.031 Score=43.16 Aligned_cols=60 Identities=10% Similarity=0.183 Sum_probs=49.0
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+..++.|...|++.. ..++..|++..+|++.++ .+|..+.++.|..+.++|...|...+.
T Consensus 93 ~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l~ 152 (155)
T 2ppt_A 93 LAGQVRLAKIDTQAH--PAVAGRHRIQGIPAFILF--HKGRELARAAGARPASELVGFVRGKLG 152 (155)
T ss_dssp HTTTCEEEEEETTTS--THHHHHTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred ccCCEEEEEEeCCcc--HHHHHHcCCCcCCEEEEE--eCCeEEEEecCCCCHHHHHHHHHHHhc
Confidence 344788999988654 357899999999999988 369999999999999998887777654
No 92
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=96.07 E-value=0.0028 Score=49.46 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=54.7
Q ss_pred cCCCHHHHHHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCC-------C---ChHHHHHHHh
Q 025774 6 TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-------V---QPESLLEDLV 75 (248)
Q Consensus 6 vl~~~~v~~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~-------~---~~e~l~~~L~ 75 (248)
++.++.+.++++.+||....|.+..+ .+..|++..+|+++++++ +|..+.++.|. . +.+.++..+.
T Consensus 66 ~~~~~~~~~~~~~~fv~V~vD~e~~~---~~~~~~v~~~PT~~f~~~-~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~ 141 (151)
T 3ph9_A 66 FAQNEEIQEMAQNKFIMLNLMHETTD---KNLSPDGQYVPRIMFVDP-SLTVRADIAGRYSNRLYTYEPRDLPLLIENMK 141 (151)
T ss_dssp HHHCHHHHHHHHHTCEEEEESSCCSC---GGGCTTCCCSSEEEEECT-TSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHH
T ss_pred HhcCHHHHHHhhcCeEEEEecCCchh---hHhhcCCCCCCEEEEECC-CCCEEEEEeCCcCCcccccchhhHHHHHHHHH
Confidence 44456778888889999998754333 356788999999999985 58989999997 4 4456777788
Q ss_pred hhhhcC
Q 025774 76 PFMDGG 81 (248)
Q Consensus 76 ~~~~~~ 81 (248)
.++.++
T Consensus 142 ~al~~~ 147 (151)
T 3ph9_A 142 KALRLI 147 (151)
T ss_dssp HHHSCC
T ss_pred HHHHHH
Confidence 777765
No 93
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=96.06 E-value=0.053 Score=40.46 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=49.0
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..++.|...|++.. ..++..|++..+|++.++++ +|..+ ...|..+.++|...|...+...
T Consensus 68 ~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~-~G~~~-~~~G~~~~~~l~~~l~~~~~~~ 128 (136)
T 2l5l_A 68 DGQIVIYKVDTEKE--QELAGAFGIRSIPSILFIPM-EGKPE-MAQGAMPKASFKKAIDEFLLKK 128 (136)
T ss_dssp TTTCEEEEEETTTC--HHHHHHTTCCSSCEEEEECS-SSCCE-EEESCCCHHHHHHHHHHHHTSC
T ss_pred cCCEEEEEEeCCCC--HHHHHHcCCCCCCEEEEECC-CCcEE-EEeCCCCHHHHHHHHHHHhhcc
Confidence 34688999998654 36788999999999999974 57766 6889999999988888776654
No 94
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.05 E-value=0.039 Score=40.57 Aligned_cols=59 Identities=8% Similarity=0.208 Sum_probs=50.0
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.++.|...|++.. ..++..|++..+|++.++.+ |..+.++.|..+.++|...|...+..
T Consensus 60 ~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~--g~~~~~~~G~~~~~~l~~~l~~~~~~ 118 (133)
T 1x5d_A 60 GKVKLAAVDATVN--QVLASRYGIRGFPTIKIFQK--GESPVDYDGGRTRSDIVSRALDLFSD 118 (133)
T ss_dssp TSEEEEEEETTTC--CHHHHHHTCCSSSEEEEEET--TEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCC--HHHHHhCCCCeeCeEEEEeC--CCceEEecCCCCHHHHHHHHHHHhhc
Confidence 5788888888643 35778899999999999975 88888999999999998888888765
No 95
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=96.05 E-value=0.026 Score=42.00 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
..++..|++..+|+++||++ +|.++.+..|..+.+++...|...+..
T Consensus 100 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 100 HALTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp CHHHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred hhHHHHhCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 46788999999999999985 599999999999999998888877764
No 96
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.03 E-value=0.037 Score=42.29 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=56.3
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
...|.|+.++|+.+...+..++||.+|-.-+.... +.++...+|.. ..+. + +++.||.+.|+. +++|.+.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 146 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHh-CcChhhEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 46888999999999999999999999999998764 66788888875 3443 5 458999999998 5666554
No 97
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=96.01 E-value=0.042 Score=41.47 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCCCCCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhc-----CCC--CCcCeEEEccCCCCccccCCCcCCCccc
Q 025774 163 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL-----EGS--EMKPFRLTHAIPGATKSLDYDSKLTFED 235 (248)
Q Consensus 163 P~~~~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~-----~~~--~~~~f~L~~~~Pr~~~~l~~d~~~tl~d 235 (248)
.++-+.....|.||+.+|+.+.-.|..++||.+|-+-|...+ ++. ++...+|+.. .+. | +++.||++
T Consensus 10 ~~~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~--GK~--L--eD~~TL~~ 83 (125)
T 2gow_A 10 SSNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGA 83 (125)
T ss_dssp CCSCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS--SSE--E--ESSCBTGG
T ss_pred ccCCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC--CcC--C--CCCCcHHH
Confidence 333345568999999999999999999999999999998743 233 2567788765 443 5 45799999
Q ss_pred cCCc
Q 025774 236 SGLA 239 (248)
Q Consensus 236 ~gl~ 239 (248)
.|+.
T Consensus 84 y~I~ 87 (125)
T 2gow_A 84 LKLP 87 (125)
T ss_dssp GCCC
T ss_pred cCCC
Confidence 9997
No 98
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.98 E-value=0.023 Score=41.58 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCC---------------CcCeEEEccCCCCccccCCCcCCCc
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSE---------------MKPFRLTHAIPGATKSLDYDSKLTF 233 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~---------------~~~f~L~~~~Pr~~~~l~~d~~~tl 233 (248)
...+|.|+.-+|+.+.-....++||.+|-.-|.... +.+ +..|.|+ |..+. |. |+++||
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~-~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~--L~-dD~~tL 79 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYV-QLKQEREGGVQHISWSYVWRTYHLT--SAGEK--LT-EDRKKL 79 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTTCCCCCCHHHHHTTEEEE--SSSCE--EC-CSSSBH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHh-CCCcccccCcceeeeeecceeEEEE--eCCcC--cc-CCcCCH
Confidence 457899999999999999999999999999988763 111 2478998 55654 63 678999
Q ss_pred cccCCc-CceEEEE
Q 025774 234 EDSGLA-NAMISVT 246 (248)
Q Consensus 234 ~d~gl~-~~~v~v~ 246 (248)
++.|+. +++|.++
T Consensus 80 ~dygI~~g~~l~lv 93 (105)
T 1v2y_A 80 RDYGIRNRDEVSFI 93 (105)
T ss_dssp HHHTCCSSEEEEEE
T ss_pred HHcCCCCCCEEEEE
Confidence 999998 5666554
No 99
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.044 Score=40.47 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+...|.++..+|+.+.-.+..++||.+|..-+.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIWA--GKQ--L--EDGRTLSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 346899999999999999999999999999998764 667788888754 442 5 457999999998 5666554
No 100
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=95.93 E-value=0.018 Score=44.11 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=47.6
Q ss_pred HHHHHhh--cceE--EEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 11 AVSQTIS--TNFI--FWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 11 ~v~~~l~--~~fV--~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.+.++.+ .++. |...|++ +...++..|++.++|++.++ ++|..+.++.|..+.+++...|...+..
T Consensus 57 ~l~~la~~~~~v~~~~~~Vd~d--~~~~la~~~~V~~iPT~~~f--k~G~~v~~~~G~~~~~~l~~~i~~~l~~ 126 (142)
T 2es7_A 57 MIAELLREFPQFDWQVAVADLE--QSEAIGDRFNVRRFPATLVF--TDGKLRGALSGIHPWAELLTLMRSIVDT 126 (142)
T ss_dssp HHHHHHHTCTTSCCEEEEECHH--HHHHHHHTTTCCSSSEEEEE--SCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcccceeEEEEECC--CCHHHHHhcCCCcCCeEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 3444444 3566 7788774 45678899999999999999 5799999999999999988888877754
No 101
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=95.92 E-value=0.076 Score=38.85 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=55.0
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
++..+.|.|+- +|+.+..+...+++|+.|++...... +.+...++|... .+. + +.+.|.+++|+. +.+|-|
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~-gi~~~~~rF~Fd--G~r--l--~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ-GKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CeE--c--CCCCCHHHcCCCCCCEEEE
Confidence 34568888888 99999999999999999999876653 556677888654 332 5 567899999998 455544
Q ss_pred E
Q 025774 246 T 246 (248)
Q Consensus 246 ~ 246 (248)
.
T Consensus 100 ~ 100 (106)
T 2eke_C 100 H 100 (106)
T ss_dssp E
T ss_pred E
Confidence 3
No 102
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=95.92 E-value=0.0088 Score=45.60 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=40.8
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.++..|++..+|+++||++ +|.++.++.|..+.+++...|...+..
T Consensus 108 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDK-AGDLRAHHFGDVSELLLGAEIATLLGE 153 (158)
T ss_dssp HHHHHTTCCSSSEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 5788999999999999995 599999999999999998888888764
No 103
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.91 E-value=0.053 Score=38.70 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+..++|.|+-.+|+.+..+...+++++.|++...... +.++..++|... .+. + +.+.|.+++++. +++|-|.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4567888998999999999999999999999877653 556778888654 443 5 567899999998 5666554
Q ss_pred e
Q 025774 247 W 247 (248)
Q Consensus 247 ~ 247 (248)
.
T Consensus 78 ~ 78 (94)
T 2io1_B 78 Q 78 (94)
T ss_dssp E
T ss_pred E
Confidence 3
No 104
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.90 E-value=0.038 Score=39.40 Aligned_cols=69 Identities=13% Similarity=0.027 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
+..++|.|++ +|+.+.-.+..++||.+|-.-|.... +.++...+|+ |..+. + | +.||.++|+.+ ++|++
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~t-gip~~~QrL~--~~Gk~--L--d-d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSIT-GLPPAMQKVM--YKGLV--P--E-DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHH-CSCSTTCCCB--SSSBC--C--S-SSBHHHHCCCTTEEEEE
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEE--ECCee--C--C-cCcHHHCCCCCCCEEEE
Confidence 4568888985 68888899999999999999998864 5667777776 55553 5 3 34999999985 55543
No 105
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=95.88 E-value=0.072 Score=37.79 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
..++|.|+-.+|+.+..+...+++++.|++..... .+.++..++|... .+. + +.+.|.+++|+. +.+|-|.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~-~gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 75 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-QGLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 75 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-TTCCSTTEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-hCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 35789999999999999999999999999987665 3556778888654 333 5 567899999998 5555454
No 106
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.85 E-value=0.068 Score=37.57 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCceEEEeeCCC-----CchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-Cce
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRT-----DPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAM 242 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~-----~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~ 242 (248)
...+|.|+.+ |+.+.-.+..+ +||.+|..-+... .+.++...+|+.. .+. + .|.++||.++|+. ++.
T Consensus 6 ~~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~-~gip~~~qrL~~~--Gk~--L-~D~~~~L~~~~i~~g~~ 78 (92)
T 1wxv_A 6 SGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEV-IGVPQSFQKLIFK--GKS--L-KEMETPLSALGIQDGCR 78 (92)
T ss_dssp SSEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--E-CCSSSBHHHHTCCSSEE
T ss_pred CeEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHH-HCcCHHHEEEEEC--Cee--c-CCCcccHHHCCCCCCCE
Confidence 4688999984 77888899985 9999999999875 4667888888753 442 6 3568899999998 455
Q ss_pred EEEE
Q 025774 243 ISVT 246 (248)
Q Consensus 243 v~v~ 246 (248)
|++.
T Consensus 79 i~l~ 82 (92)
T 1wxv_A 79 VMLI 82 (92)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 107
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=95.84 E-value=0.06 Score=39.05 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=44.3
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.|...|++. ...++..|++..+|++.++ .+|..+.++.|. ++++|...|...
T Consensus 62 ~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 62 NVIFLEVDVDD--CQDVASECEVKSMPTFQFF--KKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp TSEEEEEETTT--THHHHHHTTCCSSSEEEEE--SSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred CCEEEEEECCC--CHHHHHHcCCccccEEEEE--eCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 47888888864 3578899999999998888 469999999999 888887777654
No 108
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=95.84 E-value=0.041 Score=41.60 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=41.1
Q ss_pred HHHHHHhcC--CCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 32 GKKVCTYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 32 g~~~~~~~~--~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
...++..|+ +..+|+++||++ +|.++.++.|..+++++...|.......
T Consensus 92 ~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~l~~~~ 142 (151)
T 3raz_A 92 SRNFMKTYGNTVGVLPFTVVEAP-KCGYRQTITGEVNEKSLTDAVKLAHSKC 142 (151)
T ss_dssp HHHHHHTTTCCSCCSSEEEEEET-TTTEEEECCSCCCHHHHHHHHHHHHTC-
T ss_pred hHHHHHHhCCccCCCCEEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 455778888 899999999995 5999999999999999988888877654
No 109
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=95.83 E-value=0.0063 Score=45.46 Aligned_cols=60 Identities=5% Similarity=-0.056 Sum_probs=51.8
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 20 FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 20 fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
+.+...|++......++..|++...|+++++. +|+.+.++.|+++++.|...|...+...
T Consensus 53 ~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~--~G~ev~Ri~G~~~~~~f~~~L~~~l~~~ 112 (116)
T 3dml_A 53 APVQRLQMRDPLPPGLELARPVTFTPTFVLMA--GDVESGRLEGYPGEDFFWPMLARLIGQA 112 (116)
T ss_dssp SCEEEEETTSCCCTTCBCSSCCCSSSEEEEEE--TTEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCchhHHHHCCCCCCCEEEEEE--CCEEEeeecCCCCHHHHHHHHHHHHhhc
Confidence 67778888876666678899999999999997 6999999999999999999998887654
No 110
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.83 E-value=0.049 Score=41.61 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=54.4
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+|.|+.++|+.+.-.+..++||.+|..-+.... +.++....|... .+. + +++.||.+.|+. +++|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~~~q~L~~~--g~~--L--~d~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHeEEEEC--CeE--C--cCcccHHHhccCCCCeeEEE
Confidence 578999999999999999999999999998864 566777888753 442 5 458999999998 5666554
No 111
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.82 E-value=0.039 Score=40.52 Aligned_cols=63 Identities=13% Similarity=0.242 Sum_probs=49.6
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
+..++.|...|++.. ..++..|++..+|++.++.+ .|..+..+.|..+.++|+..|...+...
T Consensus 64 ~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~-~~~~~~~~~G~~~~~~l~~~l~~~l~~~ 126 (130)
T 2dml_A 64 LKDVVKVGAVNADKH--QSLGGQYGVQGFPTIKIFGA-NKNKPEDYQGGRTGEAIVDAALSALRSG 126 (130)
T ss_dssp TTTTSEEEEEETTTC--HHHHHHHTCCSSSEEEEESS-CTTSCEECCSCCSHHHHHHHHHHHHHHS
T ss_pred hcCceEEEEEeCCCC--HHHHHHcCCCccCEEEEEeC-CCCeEEEeecCCCHHHHHHHHHHHHhcC
Confidence 344588888888643 45788999999999999974 3445788999999999999888887654
No 112
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.80 E-value=0.098 Score=39.46 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCceE-EEeeCCCCchHHHHHHHHhhcC----CCCC--cCeEEEccCCCCccccCCCcCCCccccCCcC
Q 025774 169 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLE----GSEM--KPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 240 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~-~r~F~~~~~l~~l~~fv~~~~~----~~~~--~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~ 240 (248)
....|.||+.+|+.+ .-.|..++||..|-.-|...++ +.++ ..-+|+.+ .+. | +++.||++.++..
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~--GK~--L--eD~~TLsdy~I~~ 87 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA--GKV--L--ENSKTVKDYRSPV 87 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET--TEE--C--CTTSBGGGGSCCT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC--CeE--C--cCCCcHHHcCCCc
Confidence 468999999999888 6899999999999999976542 2232 56778764 443 5 5689999999984
No 113
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=95.80 E-value=0.041 Score=39.13 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=44.9
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
.++.|...|++. ...++..|++..+|++.++ .+|..+.++.|. +++++...|...+
T Consensus 55 ~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 55 GKVIFLKVDVDA--VAAVAEAAGITAMPTFHVY--KDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp TTSEEEEEETTT--THHHHHHHTCCBSSEEEEE--ETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred CCeEEEEEECCc--hHHHHHHcCCCcccEEEEE--ECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 378899998864 3467889999999997776 468989999998 8888877776654
No 114
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=95.78 E-value=0.064 Score=37.52 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=42.9
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
.++.+...|++.. ..++..|++..+|++.++ .+|..+.++.| .+++++...|...
T Consensus 51 ~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~g-~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 51 DNVVVLKVDVDEC--EDIAMEYNISSMPTFVFL--KNGVKVEEFAG-ANAKRLEDVIKAN 105 (106)
T ss_dssp TTEEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred CCeEEEEEeccch--HHHHHHcCCCcccEEEEE--cCCcEEEEEcC-CCHHHHHHHHHHh
Confidence 4688888888643 467889999999998777 36888999999 6888776665543
No 115
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.77 E-value=0.061 Score=37.92 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCc--eEEEeeCCCCchHHHHHHHHhhc-CCCCCcCeEEEccCCCCccccCCCcCCCcccc--CCcC-ce
Q 025774 169 LLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQL-EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDS--GLAN-AM 242 (248)
Q Consensus 169 ~~~~i~iRlp~G~--r~~r~F~~~~~l~~l~~fv~~~~-~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~--gl~~-~~ 242 (248)
....|.||.++|+ .+.-....++||.+|-.-|.... .+.++...+|+.. .+. + +++.||.+. |+.+ ++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~--Gk~--L--~D~~tL~~~~~~i~~~~~ 79 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS--GKL--L--LDHQCLRDLLPKQEKRHV 79 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET--TEE--C--CSSSCHHHHSCSSSCSEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC--CEE--C--cCcCCHHHHhcCCCCCCE
Confidence 4588999999998 44445559999999999998864 2567788888753 443 5 457899999 9984 55
Q ss_pred EEEE
Q 025774 243 ISVT 246 (248)
Q Consensus 243 v~v~ 246 (248)
|++.
T Consensus 80 i~lv 83 (93)
T 1wgd_A 80 LHLV 83 (93)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 116
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=95.76 E-value=0.042 Score=39.66 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=45.8
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
..++.|...|++.. ..++..|++..+|+++++. +|..+.++.|..+.++|...|...+
T Consensus 60 ~~~~~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~G~~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 60 ATDLTVAKLDVDTN--PETARNFQVVSIPTLILFK--DGQPVKRIVGAKGKAALLRELSDVV 117 (121)
T ss_dssp TTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHTCSCC
T ss_pred cCCeEEEEEECCCC--HHHHHhcCCCcCCEEEEEE--CCEEEEEecCCCCHHHHHHHHHHHH
Confidence 34688888888643 3578899999999998873 6889999999999998866655443
No 117
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=95.72 E-value=0.053 Score=40.84 Aligned_cols=47 Identities=15% Similarity=0.395 Sum_probs=40.5
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
.++..|++..+|+++||++ +|.++.++.|..+.+++...|...+...
T Consensus 94 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~G~~~~~~l~~~l~~ll~~~ 140 (151)
T 2f9s_A 94 QVLDAYDVSPLPTTFLINP-EGKVVKVVTGTMTESMIHDYMNLIKPGE 140 (151)
T ss_dssp HHHHHTTCCSSCEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred HHHHhcCCCCCCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence 5788899999999999985 5999999999999999988888887653
No 118
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.72 E-value=0.055 Score=37.63 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccc-cCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKS-LDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~-l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
-.+|-|+..+|+.+.-.+..++||.+|-.-+.... +.++...+|+.. .+ . + +++.||++.|+. +++|.+.
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk--~lL--~D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQ-HIPVSKQTLIVD--GI--VIL--REDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGGEEEEET--TE--ECC--CSSSBHHHHTCCTTSCEEEE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CE--Eec--CCcCCHHHcCCCCCCEEEEE
Confidence 46899999999999999999999999999998864 667888888753 33 3 4 558999999998 5656554
No 119
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=95.70 E-value=0.052 Score=39.15 Aligned_cols=51 Identities=25% Similarity=0.428 Sum_probs=40.8
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHH
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L 74 (248)
+++|...|++. ...++..|++.++|++.++ .+|..+.++.|. ++++|...|
T Consensus 51 ~~~~~~vd~d~--~~~l~~~~~V~~~PT~~~~--~~G~~v~~~~G~-~~~~l~~~i 101 (105)
T 3zzx_A 51 DVVFLKVDVDE--CEDIAQDNQIACMPTFLFM--KNGQKLDSLSGA-NYDKLLELV 101 (105)
T ss_dssp TEEEEEEETTT--CHHHHHHTTCCBSSEEEEE--ETTEEEEEEESC-CHHHHHHHH
T ss_pred CeEEEEEeccc--CHHHHHHcCCCeecEEEEE--ECCEEEEEEeCc-CHHHHHHHH
Confidence 68888888864 4568999999999998888 469999999994 777665444
No 120
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=95.65 E-value=0.042 Score=40.25 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeee---CCCChHHHHHHHhhhh
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFM 78 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~---G~~~~e~l~~~L~~~~ 78 (248)
..++..|++..+|++.|+++ +|.++ ++. |..+++++...|...+
T Consensus 89 ~~~~~~~~i~~~P~~~lid~-~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 89 GVIWARYNVPWQPAFVFYRA-DGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp SHHHHHTTCCSSSEEEEECT-TSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred hhHHHhcCCCCCCEEEEECC-CCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 45778899999999999985 58888 888 9999999888777654
No 121
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.65 E-value=0.057 Score=40.16 Aligned_cols=57 Identities=9% Similarity=0.222 Sum_probs=47.3
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 20 FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 20 fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
+.|...|++.. ..++..|++..+|++.++ .+|. +.++.|..+.++|...|...+...
T Consensus 70 v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~--~~G~-~~~~~g~~~~~~l~~~l~~~~~~~ 126 (140)
T 2dj1_A 70 IAVAKIDATSA--SMLASKFDVSGYPTIKIL--KKGQ-AVDYDGSRTQEEIVAKVREVSQPD 126 (140)
T ss_dssp CEEEEECTTTC--HHHHHHTTCCSSSEEEEE--ETTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred eEEEEEeCccc--HHHHHHCCCCccCeEEEE--ECCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence 88888888654 568889999999999999 3577 778899999999988888887653
No 122
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=95.65 E-value=0.065 Score=39.46 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+..+.|.|+-.+|+.+..+...+++++.|++...... +.++..++|+.. .+. + +.+.|.+++++. +.+|-|.
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~-gi~~~~~rfiFd--G~~--L--~~~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQ-GISRNSVRFLFD--GTP--I--DETKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHH-TCCSSSCEEESS--SCB--C--CSSSHHHHHHCSSEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4568899999999999999999999999999876653 556777888653 443 5 567899999998 4555444
No 123
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.65 E-value=0.062 Score=37.37 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=50.3
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
+.+.+. .+|+.+.-.+..++||.+|..-+.... +.++...+|+. -.+. + +++.||.++|+.+ ++|.+
T Consensus 13 ~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~--~Gk~--L--~D~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPIT-NVLPRGQKLIF--KGKV--L--VETSTLKQSDVGSGAKLML 80 (85)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHH-CCCTTTCEEEE--TTEE--C--CTTCBTTTTTCCTTEEEEE
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEE--CCeE--C--CCcCCHHHCCCCCCCEEEE
Confidence 444444 488888899999999999999998764 66778888874 3442 5 4579999999985 55544
No 124
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=95.63 E-value=0.033 Score=42.07 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 31 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 31 eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
....++..|++..+|+++||++ +|.++.++.|..+++++...|......
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~ 145 (154)
T 3ia1_A 97 RPHEVAARFKVLGQPWTFVVDR-EGKVVALFAGRAGREALLDALLLAGAD 145 (154)
T ss_dssp CHHHHHTTSSBCSSCEEEEECT-TSEEEEEEESBCCHHHHHHHHHHTTCC
T ss_pred chHHHHHHhCCCcccEEEEECC-CCCEEEEEcCCCCHHHHHHHHHhccCc
Confidence 5677889999999999999995 599999999999999998888777654
No 125
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=95.57 E-value=0.043 Score=40.04 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=37.4
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
..++..|++..+|++.||++ +|.++ .+.|..+.+++...|...+.
T Consensus 91 ~~~~~~~~i~~~P~~~~id~-~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 91 GSVWANFGVTQQPAYAFVDP-HGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp CHHHHHTTCCSSSEEEEECT-TCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred cHHHHHcCCCCCceEEEECC-CCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 45778899999999999985 58888 99999999998888876653
No 126
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=95.56 E-value=0.08 Score=40.27 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCCc---------------eEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~~~P---------------~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..+++.|++...| .++||++ +|.++.++.|..+++++...|...+..+
T Consensus 101 ~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 101 DQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp HHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred HHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4588899999899 7899985 5999999999999999999988887654
No 127
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=95.54 E-value=0.07 Score=40.06 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=50.2
Q ss_pred ceEEEEEecCChHH---------------------HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEG---------------------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg---------------------~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.+...+++.... ..++..|++..+|+++||++ +|.++.+..|..+.+++...|...
T Consensus 63 ~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~ 141 (152)
T 2lja_A 63 DIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDR-DGKIISANMTRPSDPKTAEKFNEL 141 (152)
T ss_dssp SEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECT-TSCEEESSCCCTTCHHHHHHHHHH
T ss_pred CeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECC-CCeEEEccCCCCCHHHHHHHHHHH
Confidence 57788877765431 26788999999999999985 599999999999999998888888
Q ss_pred hhcC
Q 025774 78 MDGG 81 (248)
Q Consensus 78 ~~~~ 81 (248)
...+
T Consensus 142 ~~~~ 145 (152)
T 2lja_A 142 LGLE 145 (152)
T ss_dssp HTCC
T ss_pred hccc
Confidence 7765
No 128
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.53 E-value=0.076 Score=41.14 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=55.2
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccC-CCCccccCCCcCCCccccCCc-CceEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~-Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
.+|.|+..+|+.+.-.+..++||.+|-.-+.... +.++...+|+. | +.+. + +++.||.+.|+. +++|.+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~QrL~~-~~~g~~--L--~d~~tL~~y~i~~~~~l~l 73 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKI-GVHAFQQRLAV-HPSGVA--L--QDRVPLASQGLGPGSTVLL 73 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHH-CCCGGGEEEEE-ETTCCB--C--CTTSCGGGGTCCTTCEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHh-CCCHHHEEEEE-cCCCCC--C--CCCCCHHHcCCCCCCEEEE
Confidence 4688999999999999999999999999998864 66777888873 4 3443 5 568999999998 566654
No 129
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=95.50 E-value=0.082 Score=39.09 Aligned_cols=56 Identities=16% Similarity=0.335 Sum_probs=45.3
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
++.|...|++.. ..++..|++..+|+++++ .+|..+.++.| .++++|...|...+.
T Consensus 68 ~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~i~--~~G~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 68 TVKFAKVDADNN--SEIVSKCRVLQLPTFIIA--RSGKMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp TSEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCC--HHHHHHcCCCcccEEEEE--eCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence 688999988643 458889999999998777 46899999999 688888777776654
No 130
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.50 E-value=0.12 Score=38.38 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhc-----CCC--CCcCeEEEccCCCCccccCCCcCCCccccCCc
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL-----EGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 239 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~-----~~~--~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~ 239 (248)
+..+.|.||+.+|+.+.-.+..++||..|-.-|.... ++. ++...+|+.. .+. | +++.||.++++.
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~--GK~--L--eD~~TL~~y~I~ 86 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLP 86 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET--TEE--E--CSSCBTTTTTCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCC
Confidence 3468899999999999999999999999999998742 232 4677888765 443 5 567999999986
No 131
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=95.49 E-value=0.057 Score=38.71 Aligned_cols=57 Identities=11% Similarity=0.281 Sum_probs=44.9
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
++.|...|++ +...++..|++..+|++.++ .+|..+.++.|..++++|...|..+..
T Consensus 50 ~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~--~~G~~v~~~~G~~~~~~l~~~~~~~~~ 106 (110)
T 2l6c_A 50 QVAISSVDSE--ARPELMKELGFERVPTLVFI--RDGKVAKVFSGIMNPRELQALYASIHH 106 (110)
T ss_dssp TSCEEEEEGG--GCHHHHHHTTCCSSCEEEEE--ESSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred CcEEEEEcCc--CCHHHHHHcCCcccCEEEEE--ECCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence 4677777774 34567889999999999998 469999999999999998777766644
No 132
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=95.49 E-value=0.02 Score=43.70 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=39.6
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
..++..|++..+|+++||++ +|.++.++.|..+.+++...|...+..
T Consensus 111 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~~~~~ 157 (164)
T 2h30_A 111 GTIAQNLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRNPNAD 157 (164)
T ss_dssp CHHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHCTTCC
T ss_pred hHHHHHcCCCccceEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999985 589999999999999887777766543
No 133
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.49 E-value=0.099 Score=40.48 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
...|.|+.++|+.+.-.+..++||.+|-.-+... .+.++...+|+.. .+. + +++.||.+.|+. +++|.+.
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~--G~~--L--~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH-HCCCHHHEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4789999999999999999999999999999875 3667888999764 332 5 458999999998 5666554
No 134
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=95.48 E-value=0.14 Score=35.12 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=54.2
Q ss_pred CCceEEEEEcCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 168 SLLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 168 ~~~~~i~iRlp~G~-r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
+..+.|.|+-.+|+ .+..+...+++++.|++...... +.++..++|... .+. + +.+.|.+++|+.. .+|-|
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-GLSGHKLSFFFD--GTK--L--SGKELPADLGLESGDLIEV 77 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHH-TCTTCCCEEEET--TEE--C--CSCCCHHHHTCCTTCEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 34689999999996 89999999999999999876653 555677777653 332 4 5688999999985 44433
No 135
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=95.47 E-value=0.081 Score=37.83 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=43.3
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.|...|++.. ..++..|++..+|++.++ .+|..+.++.|. +.++|...|...
T Consensus 57 ~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 57 KMVFIKVDVDEV--SEVTEKENITSMPTFKVY--KNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp TSEEEEEETTTT--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred CCEEEEEECCCC--HHHHHHcCCCcccEEEEE--ECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 588888888653 367889999999998776 368999999998 888887666554
No 136
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.47 E-value=0.056 Score=38.94 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=54.5
Q ss_pred CceEEEEEcCCC----ceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceE
Q 025774 169 LLCRVGVRLPDG----RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI 243 (248)
Q Consensus 169 ~~~~i~iRlp~G----~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v 243 (248)
...+|.|+.++| +.+.-.+..++||.+|..-|... .+.++...+|+.. .+. + .|..+||.++|+. +++|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--gk~--L-~D~~~tL~~ygI~~g~~l 79 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-SGVPAEEAQIVYM--EQL--L-TDDHCSLGSYGLKDGDMV 79 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-TCCCGGGBCEEET--TEE--E-CCSSSBHHHHTCCTTEEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-HCcChHHeEEEEC--CEE--C-CCCcccHHHCCCCCCCEE
Confidence 457888999865 67778899999999999999876 4667778888754 342 5 3556899999998 4555
Q ss_pred EEE
Q 025774 244 SVT 246 (248)
Q Consensus 244 ~v~ 246 (248)
++.
T Consensus 80 ~l~ 82 (102)
T 1v5o_A 80 VLL 82 (102)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 137
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=95.45 E-value=0.11 Score=36.61 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=43.9
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
++.+...|.+.. ..++..|++..+|++.++ .+|..+..+.|..+.++|...|..
T Consensus 56 ~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 56 GVKIAEVDCTAE--RNICSKYSVRGYPTLLLF--RGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp CEEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEECSCCSHHHHHHHHHH
T ss_pred ceEEEEEecccc--HhHHHhcCCCcccEEEEE--eCCcEEEeccCCcCHHHHHHHHHh
Confidence 578888888643 458899999999998888 468889999999999988776653
No 138
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=95.42 E-value=0.095 Score=38.53 Aligned_cols=61 Identities=16% Similarity=0.351 Sum_probs=46.4
Q ss_pred HHHHhhc--ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 12 VSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 12 v~~~l~~--~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
+.++.+. ++.|...|++. ...++..|++..+|+++++ .+|..+.++.| .+++++...|...
T Consensus 60 l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G-~~~~~l~~~l~~~ 122 (124)
T 1xfl_A 60 FADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPTFMFL--KEGKILDKVVG-AKKDELQSTIAKH 122 (124)
T ss_dssp HHHHHHHCSSEEEEEEETTT--SHHHHHHTTCCSSSEEEEE--ETTEEEEEEES-CCHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEEEECcc--CHHHHHHcCCCccCEEEEE--ECCEEEEEEeC-CCHHHHHHHHHHh
Confidence 3444443 68899998864 3468899999999998877 46999999999 4888887766654
No 139
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=95.42 E-value=0.073 Score=37.18 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=43.7
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.|...|.+. ...++..|++..+|++.++ .+|..+.++.|. +++++...|...
T Consensus 51 ~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 51 NVIFLEVDVDD--CQDVASESEVKSMPTFQFF--KKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp TSEEEEEETTT--CHHHHHHTTCCBSSEEEEE--ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred CeEEEEEEhhh--hHHHHHHcCCCcCcEEEEE--ECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 47888888754 3468899999999999999 358899999999 888887766554
No 140
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=95.41 E-value=0.084 Score=39.40 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=51.2
Q ss_pred HHHHHhhc-ceEEEEEecCC-------hHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 11 AVSQTIST-NFIFWQVYDDT-------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 11 ~v~~~l~~-~fV~w~~d~~~-------~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.+.++.+. .+.|...|++. .+...++..|++..+|+++++. +|..+.++.|..+.+.+...+...++.
T Consensus 52 ~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~--~G~~v~~~~G~~~~~~~~~~i~~~~~~ 127 (135)
T 3emx_A 52 QLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYK--EGRIVDKLVGATPWSLKVEKAREIYGG 127 (135)
T ss_dssp HHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHC--
T ss_pred hHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEc--CCEEEEEEeCCCCHHHHHHHHHHHhCC
Confidence 44445444 36777777743 4567889999999999888886 699999999999998887777777664
No 141
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.41 E-value=0.068 Score=38.88 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=53.7
Q ss_pred ceEEEEEcCCC---ceEEEeeCC---------CCchHHHHHHHHhhcC-CCCCcC-eEEEccCCCCccccCCCcCCCccc
Q 025774 170 LCRVGVRLPDG---RRMQRNFLR---------TDPIQLLWSYCYSQLE-GSEMKP-FRLTHAIPGATKSLDYDSKLTFED 235 (248)
Q Consensus 170 ~~~i~iRlp~G---~r~~r~F~~---------~~~l~~l~~fv~~~~~-~~~~~~-f~L~~~~Pr~~~~l~~d~~~tl~d 235 (248)
..+|.||..+| +.+.-.|.. ++||.+|-..|..... +.++.. .+|+.. .+. + +++.||.+
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~--Gk~--L--~D~~tL~~ 85 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC--GRK--L--KDDQTLDF 85 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET--TEE--C--CTTCBHHH
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC--CeE--C--CCCCcHHH
Confidence 47899999999 777778665 5999999999988642 566777 888743 443 5 45799999
Q ss_pred cCCc-CceEEEE
Q 025774 236 SGLA-NAMISVT 246 (248)
Q Consensus 236 ~gl~-~~~v~v~ 246 (248)
+|+. +++|.+.
T Consensus 86 y~i~~g~~i~lv 97 (107)
T 1x1m_A 86 YGIQPGSTVHVL 97 (107)
T ss_dssp HTCCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 9998 5556553
No 142
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.37 E-value=0.066 Score=45.12 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=48.5
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
+..+++|..+|++.. ..++..|++..+|++.++ .+|..+.++.|..+.+.+...|...+
T Consensus 55 ~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 55 YNGQFILAKLDCDAE--QMIAAQFGLRAIPTVYLF--QNGQPVDGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp HTSSSEEEEEETTTC--HHHHHTTTCCSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred cCCCeEEEEEeCccC--HHHHHHcCCCCCCeEEEE--ECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence 334699999999754 478899999999999999 36899999999999888877776654
No 143
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=95.36 E-value=0.16 Score=34.06 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=52.9
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
+.|.|+-.+|+.+..+...+++++.|++...... +.++..++|... .+. + +.+.|.+++|+.. .+|-|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHH-TCCTTTCEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 5788888999999999999999999999876653 556778888654 333 5 5678999999985 44433
No 144
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=95.35 E-value=0.068 Score=43.11 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=51.3
Q ss_pred HhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 15 TISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 15 ~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
-+..++.|..+|++.. ..++..|++..+|++.++ .+|..+.++.|..+.++|...|...+...
T Consensus 142 ~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~i~~~l~~~ 204 (210)
T 3apq_A 142 EVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIF--RSGMAAVKYNGDRSKESLVAFAMQHVRST 204 (210)
T ss_dssp HTBTTBEEEEEETTTC--HHHHHHTTCCSSSEEEEE--CTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred HhcCceEEEEEECCcc--HHHHHHcCCCcCCeEEEE--ECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence 3344688888888654 468889999999999988 56888899999999999988888887653
No 145
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.11 Score=36.94 Aligned_cols=55 Identities=15% Similarity=0.416 Sum_probs=42.9
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
++.|...|++.. ..++..|++..+|++.++ .+|..+.++.|. .+++|...|...+
T Consensus 54 ~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~~ 108 (112)
T 3d6i_A 54 NVSFLSIDADEN--SEISELFEISAVPYFIII--HKGTILKELSGA-DPKEYVSLLEDCK 108 (112)
T ss_dssp TSEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEECSC-CHHHHHHHHHHHH
T ss_pred CEEEEEEecccC--HHHHHHcCCCcccEEEEE--ECCEEEEEecCC-CHHHHHHHHHHHH
Confidence 688999998654 367889999999998887 469999999997 4556666666554
No 146
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=95.34 E-value=0.037 Score=40.99 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=35.6
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHH
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L 74 (248)
..++..|++..+|+++||++ +|.++.++.|..+.++|...|
T Consensus 104 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 104 GELMKEYHIITIPTSFLLNE-KGEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp SHHHHHTTCCEESEEEEECT-TCCEEEEEESCCCHHHHHHHH
T ss_pred hhHHHhcCcCccCeEEEEcC-CCcEEEEEcCCcCHHHHHHhh
Confidence 36788999999999999985 599999999999999887654
No 147
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.33 E-value=0.065 Score=37.92 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
..+|.||. |+.+.-.+..++||.+|..-+.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASLE-GIAPEDQVVLLA--GAP--L--EDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHH-TCCGGGCEEEET--TEE--C--CTTSBHHHHTCCSSCEEEEE
T ss_pred cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHh-CcChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 46777776 8888889999999999999998764 567788888754 443 5 457999999998 5666554
No 148
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.32 E-value=0.032 Score=42.07 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=42.1
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..++..|++..+|+++||++ +|.++..+.|..+.+++...|...+...
T Consensus 96 ~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 143 (153)
T 2l5o_A 96 KAVGQAFGTQVYPTSVLIGK-KGEILKTYVGEPDFGKLYQEIDTAWRNS 143 (153)
T ss_dssp CHHHHHHTCCSSSEEEEECS-SSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCccCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 35788899999999999985 5888899999999999999999988864
No 149
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=95.32 E-value=0.039 Score=43.28 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=40.1
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.++..|++..+|+++||++ +|.++.++.|..+.+++...|...++.
T Consensus 123 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 168 (176)
T 3kh7_A 123 TLGLDLGVYGAPETYLIDK-QGIIRHKIVGVVDQKVWREQLAPLYQQ 168 (176)
T ss_dssp HHHHHHTCCSSCEEEEECT-TCBEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred hHHHHcCCCCCCeEEEECC-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5677889999999999995 599999999999999998888888764
No 150
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=95.27 E-value=0.042 Score=39.99 Aligned_cols=42 Identities=21% Similarity=0.447 Sum_probs=36.6
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
.++..|++..+|+++||++ +|.++.++.|..+++++...|..
T Consensus 95 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 95 KLLETYGVRSYPTQAFIDK-EGKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp HHHHHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHcCcccCCeEEEECC-CCcEEEeecCCCcHHHHHHHHHh
Confidence 5788999999999999995 59999999999999988777654
No 151
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.23 E-value=0.11 Score=37.93 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=46.0
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
++.|...|++.. ..++..|++..+|++.++ .+|. +.++.|..+.++|...|...+..
T Consensus 55 ~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~--~~G~-~~~~~G~~~~~~l~~~l~~~~~~ 111 (126)
T 1x5e_A 55 EVNIAKVDVTEQ--PGLSGRFIINALPTIYHC--KDGE-FRRYQGPRTKKDFINFISDKEWK 111 (126)
T ss_dssp TCEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTE-EEECCSCCCHHHHHHHHHTCGGG
T ss_pred CeEEEEEECcCC--HHHHHHcCCcccCEEEEE--eCCe-EEEeecCCCHHHHHHHHHHHhhc
Confidence 789999988644 357889999999999999 4577 57899999999888777776543
No 152
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=95.23 E-value=0.11 Score=37.36 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=45.4
Q ss_pred HHHHHhhc-ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 11 AVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 11 ~v~~~l~~-~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
.+.++.+. ++.+...|++. ...++..|++..+|++.++ .+|..+.++.| .+++++...|...
T Consensus 54 ~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 54 LFKELSEKYDAIFVKVDVDK--LEETARKYNISAMPTFIAI--KNGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp HHHHHHTTSSSEEEEEETTT--SHHHHHHTTCCSSSEEEEE--ETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcEEEEEECCc--cHHHHHHcCCCccceEEEE--eCCcEEEEEeC-CCHHHHHHHHHHh
Confidence 34444444 67888888854 3468889999999998877 46899999999 5788776666543
No 153
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.21 E-value=0.0033 Score=42.66 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=51.4
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
+|.||.++|+.+.-.+..++||.+|..-+... .+.++...+|... .+. + +++.||.++|+. +++|.+
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ-QGVPADQLRVIFA--GKE--L--PNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 47788999998888999999999999999875 3556677777543 443 5 457999999998 455543
No 154
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=95.12 E-value=0.11 Score=37.17 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=48.4
Q ss_pred HHHHhhc--ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 12 VSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 12 v~~~l~~--~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
+.++.+. ++.|...|++. ...++..|++..+|++.++ .+|..+.++.| .+++++...|...+..
T Consensus 50 l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 50 FAEYAKKFPGAIFLKVDVDE--LKDVAEAYNVEAMPTFLFI--KDGEKVDSVVG-GRKDDIHTKIVALMGS 115 (118)
T ss_dssp HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSBSEEEEE--ETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCcEEEEEEccc--CHHHHHHcCCCcCcEEEEE--eCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence 3444443 68888888864 3467889999999998887 46898999999 5888888888777653
No 155
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=95.11 E-value=0.15 Score=35.40 Aligned_cols=54 Identities=17% Similarity=0.388 Sum_probs=42.5
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.|...|++.. ..++..|++..+|++.++. +|..+.++.| .+++++...|...
T Consensus 50 ~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 50 EVEFAKVDVDQN--EEAAAKYSVTAMPTFVFIK--DGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp TSEEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred CCEEEEEeccCC--HHHHHHcCCccccEEEEEe--CCcEEEEEeC-CCHHHHHHHHHhh
Confidence 688888888643 4678899999999988774 6889999999 5888876666543
No 156
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=95.10 E-value=0.14 Score=40.51 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=54.9
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
+|.||..+|+.+.-....++||.+|-.-+.... +.++...+|+.. .+. + +++.||.++|+. +++|.+.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCTTTEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCHHHEEEEEC--Ccc--c--cCcCcHHHcCCCCCCEEEEE
Confidence 588999999999999999999999999998764 667888888764 332 5 458999999998 5666554
No 157
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=95.06 E-value=0.036 Score=42.63 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
..++..|++..+|+++||++ +|.++.++.|..+++.+...|...++.
T Consensus 115 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 161 (168)
T 2b1k_A 115 GMLGLDLGVYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEK 161 (168)
T ss_dssp CHHHHHHTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred hHHHHHcCccccCEEEEECC-CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 35778899999999999985 599999999999999888777776653
No 158
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=95.04 E-value=0.059 Score=36.17 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=41.6
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
++.+...|++... .++..|++..+|++.+ +|.. ++.|..+.+++...|...+
T Consensus 33 ~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~----~G~~--~~~G~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 33 KIDVEKIDIMVDR--EKAIEYGLMAVPAIAI----NGVV--RFVGAPSREELFEAINDEM 84 (85)
T ss_dssp SCCEEEECTTTCG--GGGGGTCSSCSSEEEE----TTTE--EEECSSCCHHHHHHHHHHC
T ss_pred CeEEEEEECCCCH--HHHHhCCceeeCEEEE----CCEE--EEccCCCHHHHHHHHHHHh
Confidence 7888888886443 5778999999999988 4766 7889889999887777654
No 159
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=95.02 E-value=0.052 Score=40.91 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=38.6
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.++..|++..+|+++||++ +|.++.++.|..+.+++...|...+.
T Consensus 108 ~~~~~~~v~~~P~~~~id~-~G~i~~~~~g~~~~~~l~~~l~~~l~ 152 (156)
T 1kng_A 108 RASIEWGVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQME 152 (156)
T ss_dssp HHHHHTTCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred HHHHhcCcCccCeEEEEcC-CCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 5778899999999999985 58999999999999988887777665
No 160
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.98 E-value=0.11 Score=36.36 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCceEEE-eeCCCCchHHHHHHHHhhcCCCCCcCeEEEcc-CCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 169 LLCRVGVRLPDGRRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r-~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
...+|.|+. +|+.+.- ....++||.+|-.-|... .+.++..-+|+-. |-.+ .+ +++.||.++|+. +++|++
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~-~gip~~~QkLi~~k~~Gk--~L--~D~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKVKGK--PA--ENDVKLGALKLKPNTKIMM 79 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEETTE--EC--CTTSBHHHHTCCTTEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHH-HCcCHHHeEEEeeccCCc--Cc--CCCCCHHHcCCCCCCEEEE
Confidence 356788886 7887776 778899999999999875 5677888888832 3233 24 457899999998 455554
No 161
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.98 E-value=0.16 Score=35.46 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 239 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~ 239 (248)
+.++|+.|-+|--.+..-|-...-+|++|+--|-.+- ++++..+.|....-.. .+.|.++||.|+||.
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kc-efdp~~~~Ll~d~~~~---e~LdLskSLndlgir 75 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKC-EFDPLHTLLLKDYQSQ---EPLDLTKSLNDLGLR 75 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHT-TCCTTSEEEESCSSCC---CBCCTTSCHHHHTCS
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcc-cCChhhEEEecCCCCC---cccchhcchhhhhhh
Confidence 4689999999988888889999999999999886653 4568899998764333 223889999999997
No 162
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=94.97 E-value=0.026 Score=42.91 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=40.0
Q ss_pred HHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 35 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 35 ~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
++..|++..+|+++||++ +|.++.++.|..+.+++...|...+..
T Consensus 112 ~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 112 TMKKYRLEGTPSIILADR-KGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp HHHHTTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred HHHhcccCccceEEEECC-CCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 788999999999999995 599999999999999998888888764
No 163
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.96 E-value=0.065 Score=38.27 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCceE-EEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 169 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~-~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
...+|.|+. +|+.+ .-.+..++||.+|-.-|... .+.++...+|+ |..+. +. | + ||.++|+. +++|++
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~-tgip~~~QkLi--~~Gk~--L~-D-~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFAL-TGVQPARQKVM--VKGGT--LK-D-D-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHH-TCCCTTTSCCE--ETTEE--CC-S-S-CCCSCCCCSSCEEEC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEE--ECCcC--CC-C-C-CHHHCCCCCCCEEEE
Confidence 467788886 67777 47899999999999999875 56677788887 45553 53 3 5 99999998 455543
No 164
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=94.96 E-value=0.1 Score=36.98 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=44.0
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
++.|...|++.. ..++..|++..+|++.++ .+|..+.++.| .++++|...|...+
T Consensus 57 ~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~g-~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 57 NVTFLKVDVDEL--KAVAEEWNVEAMPTFIFL--KDGKLVDKTVG-ADKDGLPTLVAKHA 111 (113)
T ss_dssp SEEEEEEETTTC--HHHHHHHHCSSTTEEEEE--ETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred CcEEEEEEcccc--HHHHHhCCCCcccEEEEE--eCCEEEEEEec-CCHHHHHHHHHHhh
Confidence 688888888643 457888999999999888 46899999999 58888877776654
No 165
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=94.94 E-value=0.15 Score=38.91 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=46.6
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
++.|..+|++.. ..++..|++..+|++.++. +|..+.++.|. +++++...|...+..
T Consensus 63 ~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 63 QVSFVKLEAEGV--PEVSEKYEISSVPTFLFFK--NSQKIDRLDGA-HAPELTKKVQRHASS 119 (153)
T ss_dssp TSEEEEEETTTS--HHHHHHTTCCSSSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred CeEEEEEECCCC--HHHHHHcCCCCCCEEEEEE--CCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 688999988653 3578899999999999997 69999999995 778887777777654
No 166
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.051 Score=39.23 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
.++|.|+. +|+.+.-.+..++||.+|-.-|.... +.++...+|+.. .+ .+ +++.||.++|+.+ ++|.+
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk--~L--~D~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIYS--GK--IL--KDDQTVESYHIQDGHSVHL 96 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHH-SCCSTTCCEEET--TE--EC--CTTSBTTTTTCCTTEEEEE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHH-CcChHHEEEEEC--CE--EC--CCcCcHHHCCCCCCCEEEE
Confidence 46788886 88888889999999999999998864 666777788753 33 25 4589999999984 55544
No 167
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=94.78 E-value=0.075 Score=38.47 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=47.8
Q ss_pred HhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCC----CChHHHHHHHhhhhhcC
Q 025774 15 TISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFMDGG 81 (248)
Q Consensus 15 ~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~----~~~e~l~~~L~~~~~~~ 81 (248)
.+..++.|...|++.. ..++..|++..+|++.++.. |..+.++.|. .+++++...|...+...
T Consensus 49 ~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 115 (122)
T 3aps_A 49 MIKGKVRAGKVDCQAY--PQTCQKAGIKAYPSVKLYQY--ERAKKSIWEEQINSRDAKTIAALIYGKLETL 115 (122)
T ss_dssp HHTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEEE--EGGGTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred HhcCCeEEEEEeCcCC--HHHHHHcCCCccceEEEEeC--CCccceeeccccCcCCHHHHHHHHHHHHHhh
Confidence 3344799999998654 35788999999999999964 3335666665 78999988888887754
No 168
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=94.75 E-value=0.21 Score=37.36 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=45.4
Q ss_pred ceEEEEEecCCh--HH-------------------HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCC--ChHHHHHHHh
Q 025774 19 NFIFWQVYDDTS--EG-------------------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLV 75 (248)
Q Consensus 19 ~fV~w~~d~~~~--eg-------------------~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~--~~e~l~~~L~ 75 (248)
++.+...+++.. +. ..++..|++..+|+++||++ +|.++.++.|.. +.+++...|.
T Consensus 61 ~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~ 139 (154)
T 3kcm_A 61 PFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDR-HGVILKKVVGAMEWDHPEVIAFLN 139 (154)
T ss_dssp SEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEEEEECT-TSBEEEEEESCCCTTSHHHHHHHH
T ss_pred CeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeEEEECC-CCcEEEEEcCCCccccHHHHHHHH
Confidence 577777777653 22 23788899999999999995 699999999986 6668887777
Q ss_pred hhhhcC
Q 025774 76 PFMDGG 81 (248)
Q Consensus 76 ~~~~~~ 81 (248)
......
T Consensus 140 ~l~~~~ 145 (154)
T 3kcm_A 140 NELSKA 145 (154)
T ss_dssp TC----
T ss_pred HHHHHh
Confidence 776554
No 169
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=94.74 E-value=0.2 Score=35.28 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=41.4
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.|...|++.. ..++..|++..+|++.++ .+|..+.++.|.. +++|...|...
T Consensus 52 ~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~-~~~l~~~l~~~ 105 (107)
T 1gh2_A 52 QAVFLEVDVHQC--QGTAATNNISATPTFQFF--RNKVRIDQYQGAD-AVGLEEKIKQH 105 (107)
T ss_dssp TSEEEEEETTTS--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred CcEEEEEECccC--HHHHHhcCCCcccEEEEE--ECCeEEEEEeCCC-HHHHHHHHHHh
Confidence 688888888643 457889999999999888 4688899999954 45566555544
No 170
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=94.70 E-value=0.21 Score=35.51 Aligned_cols=53 Identities=15% Similarity=0.348 Sum_probs=41.6
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
++.|...|++. ...++..|++..+|++.++. +|..+.++.|. +++++...|..
T Consensus 55 ~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~i~~ 107 (109)
T 3f3q_A 55 QADFYKLDVDE--LGDVAQKNEVSAMPTLLLFK--NGKEVAKVVGA-NPAAIKQAIAA 107 (109)
T ss_dssp TSEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEEEEESS-CHHHHHHHHHH
T ss_pred CCEEEEEECCC--CHHHHHHcCCCccCEEEEEE--CCEEEEEEeCC-CHHHHHHHHHh
Confidence 47777777754 34588999999999999986 69999999998 67777665544
No 171
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.69 E-value=0.28 Score=35.09 Aligned_cols=76 Identities=7% Similarity=0.010 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCc--eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccC--CCCccccCCCcCCCccccCCc-Cce
Q 025774 168 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI--PGATKSLDYDSKLTFEDSGLA-NAM 242 (248)
Q Consensus 168 ~~~~~i~iRlp~G~--r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~--Pr~~~~l~~d~~~tl~d~gl~-~~~ 242 (248)
++.++|.|..++.+ .++++|..++||..|-.-|... .|.++...+|...- ++....+ .++++||.+.|+. +++
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-~Gip~~~QrLi~~g~~g~~~~~L-~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-CGTSVNSMALELYDDSGSKVAVL-SDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-HCCCTTSEEEEEECSSSCBCCCS-SGGGSCHHHHCCCSCCE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-HCcCHHHeEEEEecCCCccccee-cCCcCCHHHCCCCCCCE
Confidence 46789999987764 7999999999999999999886 47778888887532 1211012 3678999999998 455
Q ss_pred EEE
Q 025774 243 ISV 245 (248)
Q Consensus 243 v~v 245 (248)
|.+
T Consensus 90 Ihl 92 (97)
T 2kj6_A 90 LHI 92 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 172
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=94.68 E-value=0.12 Score=41.86 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=54.9
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
..|.||..+|+.+.-.+..++||.+|-.-|.... +.++...+|+. ..+. | +++.||.++|+. +++|.+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~-gIp~~~QrLi~--~Gk~--L--~D~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHL 174 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEE--TTEE--C--CTTCBGGGGTCCTTCEEEE
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhcc-CCCHHHEEEEE--CCEE--C--CCCCCHHHCCCCCCCEEEE
Confidence 6899999999999999999999999999998764 66677788874 3443 5 448999999998 566654
No 173
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=94.57 E-value=0.18 Score=37.35 Aligned_cols=57 Identities=14% Similarity=0.344 Sum_probs=46.8
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
++.|...|++. ...++..|++..+|++.++ .+|..+.++.|. ++++|...|...+..
T Consensus 77 ~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 77 SLMFLVIDVDE--LSDFSASWEIKATPTFFFL--RDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp TSEEEEEETTT--SHHHHHHTTCCEESEEEEE--ETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCcc--cHHHHHHcCCCcccEEEEE--cCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 58888888864 3468899999999998877 469999999998 888888878777664
No 174
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=94.56 E-value=0.18 Score=36.39 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=44.5
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
++.|...|++.. ..++..|++..+|++.++ .+|..+.++.|.. .++|...|...+.
T Consensus 65 ~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~-~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 65 NAVFLKVDVDEL--KPIAEQFSVEAMPTFLFM--KEGDVKDRVVGAI-KEELTAKVGLHAA 120 (122)
T ss_dssp TSEEEEEETTTC--HHHHHHTTCCSSSEEEEE--ETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred CcEEEEEECCCC--HHHHHHcCCCcccEEEEE--eCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence 478888888643 467889999999998777 4689899999988 8888777776654
No 175
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=94.55 E-value=0.088 Score=38.35 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=43.4
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 20 FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 20 fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
+.+...|++.. ..++..|++..+|++.++. +|..+.++.|. ++++|...|...+
T Consensus 67 v~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 67 VGFYKVDVDEQ--SQIAQEVGIRAMPTFVFFK--NGQKIDTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp SEEEEEETTTC--HHHHHHHTCCSSSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred EEEEEEECcCC--HHHHHHcCCCcccEEEEEE--CCeEEeeEcCC-CHHHHHHHHHHhh
Confidence 88888888653 3578899999999998873 68899999998 8888877666543
No 176
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.54 E-value=0.073 Score=43.89 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=49.7
Q ss_pred eEEEeeCCCCchHHHHHHHHhhcCCCCC-cCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEEe
Q 025774 182 RMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 247 (248)
Q Consensus 182 r~~r~F~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~~ 247 (248)
.++..|...+|++.|+..+...+ +.+. ..++|..-+....+.+..+.++||+|++|. +..|+++.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIF-SIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHT-TCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 47799999999999999998865 3344 479998755444445556778999999998 67777763
No 177
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=94.48 E-value=0.37 Score=35.91 Aligned_cols=47 Identities=17% Similarity=0.438 Sum_probs=36.7
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCCh--HHHHHHHhhhhhcC
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP--ESLLEDLVPFMDGG 81 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~--e~l~~~L~~~~~~~ 81 (248)
.++..|++..+|.++||++ +|.++.++.|..+. +++...|.+.+...
T Consensus 96 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~ 144 (152)
T 3gl3_A 96 QTPRLYGVKGMPTSFLIDR-NGKVLLQHVGFRPADKEALEQQILAALGGN 144 (152)
T ss_dssp HHHHHTTCCSSSEEEEECT-TSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred hhHHHcCCCCCCeEEEECC-CCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence 5778899999999999995 69999999997644 67777777766543
No 178
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=94.47 E-value=0.15 Score=37.72 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=43.1
Q ss_pred ceEEEEEecCChH-----------------------HHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHh
Q 025774 19 NFIFWQVYDDTSE-----------------------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 75 (248)
Q Consensus 19 ~fV~w~~d~~~~e-----------------------g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~ 75 (248)
++.+...+++... ...++..|++..+|+++||++ +|.++.+.. +.+++...|.
T Consensus 67 ~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~ 142 (148)
T 3fkf_A 67 NFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSP-TGKILARDI---QGEALTGKLK 142 (148)
T ss_dssp TEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHH
T ss_pred CeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECC-CCeEEEecC---CHHHHHHHHH
Confidence 4788888776544 447889999999999999985 588776654 7777777777
Q ss_pred hhhh
Q 025774 76 PFMD 79 (248)
Q Consensus 76 ~~~~ 79 (248)
..+.
T Consensus 143 ~ll~ 146 (148)
T 3fkf_A 143 ELLK 146 (148)
T ss_dssp HHC-
T ss_pred HHHc
Confidence 6653
No 179
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=94.45 E-value=0.11 Score=38.60 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=37.4
Q ss_pred HHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 35 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 35 ~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
++..|++..+|+++||++ +|.++.++.|..+.++++..+...+.
T Consensus 103 ~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~l~~l~~~l~ 146 (148)
T 3hcz_A 103 FKITYDIYATPVLYVLDK-NKVIIAKRIGYENLDDFLVQYEKSLK 146 (148)
T ss_dssp HHHHHCCCSSCEEEEECT-TCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred HHHhcCcCCCCEEEEECC-CCcEEEecCCHHHHHHHHHHHHHHhc
Confidence 788899999999999995 59999999998888888888776543
No 180
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.43 E-value=0.15 Score=35.79 Aligned_cols=71 Identities=11% Similarity=-0.028 Sum_probs=51.3
Q ss_pred eEEEEEcCCCceEE--E-eeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 171 CRVGVRLPDGRRMQ--R-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 171 ~~i~iRlp~G~r~~--r-~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
..|-|+...|+... - ....++||.+|..-|....++.++..-+|...+=.+ .+ +++.||++.|+.+ ++|.|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk--~L--~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGK--SL--KDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSC--CC--CTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCc--Cc--CCCCCHHHcCCCCCCEEEE
Confidence 56778888887653 3 678999999999999874456667777786543233 25 5589999999985 44444
No 181
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=94.40 E-value=0.27 Score=38.24 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 40 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 40 ~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
++..+|+++||++ .|.++.++.|..+++++...|...+.
T Consensus 143 ~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 143 PASVIPTTIVLDK-QHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp CTTCCSEEEEECT-TSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 5688999999995 59999999999999999888887765
No 182
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=94.29 E-value=0.14 Score=38.78 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 40 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 40 ~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
++..+|.++||++ +|.++..+.|..+++++...|...+...
T Consensus 113 ~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 153 (165)
T 3or5_A 113 GITGIPTSFVIDA-SGNVSGVIVGPRSKADFDRIVKMALGAK 153 (165)
T ss_dssp CSCSSSEEEEECT-TSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred CCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence 7899999999995 5999999999999999999999888765
No 183
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.20 E-value=0.18 Score=41.92 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=48.2
Q ss_pred eEEEeeCCCCchHHHHHHHHhhcCCCCC-cCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 182 RMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 182 r~~r~F~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
.++.+|...+|++.|+..+...+ +.+. ..++|..-+-...+.+..+.++||+|++|. +..|+++
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLF-NIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHT-TCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eEEEEecccCcHHHHHHHHHHHh-CCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 36689999999999999998865 4444 479998755443344445788999999998 5666665
No 184
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=94.18 E-value=0.2 Score=34.99 Aligned_cols=71 Identities=8% Similarity=0.045 Sum_probs=51.6
Q ss_pred ceEEEEEcC--CCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcc-----CCCCccccCCCcCCCccccCCc-Cc
Q 025774 170 LCRVGVRLP--DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-----IPGATKSLDYDSKLTFEDSGLA-NA 241 (248)
Q Consensus 170 ~~~i~iRlp--~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-----~Pr~~~~l~~d~~~tl~d~gl~-~~ 241 (248)
+++|.|.-. ++....+||..++||..|-.-+... .|.++..-+|... |..+ + .+.++||.+.|+. ++
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-~Gip~~~QrLi~~~~~~~~~g~---~-l~d~~tL~~Y~i~~g~ 76 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-FATPPEYMQLQLIDDRGITIEK---N-MANDKQLGYYQCRDEF 76 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-SCCCGGGEEEEEECTTSCEEES---S-CCTTSBGGGGTCCTTC
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-HCCCHHHEEEEEecCCCCceee---E-cCCCCCHHHCCCCCCC
Confidence 456666543 3445699999999999999999874 5777888888642 2222 2 3678999999998 56
Q ss_pred eEEE
Q 025774 242 MISV 245 (248)
Q Consensus 242 ~v~v 245 (248)
+|.+
T Consensus 77 ~ihl 80 (86)
T 4b6w_A 77 VIHV 80 (86)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6644
No 185
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.07 E-value=0.07 Score=38.87 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=50.2
Q ss_pred eEEEEEcCCCceEEEeeC-CCCchHHHHHHHHhhcCCCCCcCeEEEc-cCC------CCccccC--CCcCCCccccCCc-
Q 025774 171 CRVGVRLPDGRRMQRNFL-RTDPIQLLWSYCYSQLEGSEMKPFRLTH-AIP------GATKSLD--YDSKLTFEDSGLA- 239 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~-~~~~l~~l~~fv~~~~~~~~~~~f~L~~-~~P------r~~~~l~--~d~~~tl~d~gl~- 239 (248)
..|+||-++|+. .-... .+++|.+|..-|.... +.++...+|.. +.| .....+. .+.++||.++||.
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~-gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQL-QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHS-CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHh-CcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 569999999975 33566 8899999999998864 55677777743 221 1000120 3678999999998
Q ss_pred CceEEEE
Q 025774 240 NAMISVT 246 (248)
Q Consensus 240 ~~~v~v~ 246 (248)
.++|.+.
T Consensus 86 G~~L~l~ 92 (107)
T 1wf9_A 86 GSMVYLA 92 (107)
T ss_dssp TCEEECC
T ss_pred CCEEEEE
Confidence 4555543
No 186
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=94.07 E-value=0.17 Score=37.66 Aligned_cols=58 Identities=7% Similarity=0.089 Sum_probs=44.5
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCc--eEEeeeCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~--~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+++|...|++.. ..++..|++..+|++.++...+|. .+.++.|. ++++|...|...+.
T Consensus 70 ~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 70 YVTLVDIDVDIH--PKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL 129 (133)
T ss_dssp ECEEEEEETTTC--HHHHHHTTCCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred CEEEEEEeccch--HHHHHhcCCCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence 468888887643 467889999999999998322466 88899998 88888777776654
No 187
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.01 E-value=0.38 Score=35.69 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=55.8
Q ss_pred CceEEEEE-cCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 169 LLCRVGVR-LPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 169 ~~~~i~iR-lp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
..++|.|. .|+|.+++-.|..+.+|.+|-+-+.... +.+...-+|+.+ .+. + .++.||++.|+. +.+|.+
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~-~iP~e~qrLIy~--GKi--L--KD~eTL~~~gIk~g~TIhL 85 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLL-GIPHSVLQIRYS--GKI--L--KNNETLVQHGVKPQEIVQV 85 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHH-TCCTTTEEEEET--TEE--E--CSSCCHHHHSCCSSCEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhh-CCChHHEEEEEC--CeE--c--CCcchHHHcCCCCCCEEEE
Confidence 34678887 7899999999999999999999998875 557778888665 453 6 457899999997 566643
No 188
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=93.94 E-value=0.5 Score=35.68 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=47.4
Q ss_pred ceEEEEEecCChHHH---------------------HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGK---------------------KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~---------------------~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.+.+.+++..... .++..|++..+|+++||++ +|.++.++.|..+.++.+..+.+-
T Consensus 68 ~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~e~~~~~~~~~ 146 (152)
T 2lrt_A 68 GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNR-NNELSARGENIKDLDEAIKKLLEG 146 (152)
T ss_dssp TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEET-TTEEEEETTTCSCHHHHHHHHHGG
T ss_pred CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccCceEEEECC-CCeEEEecCCHHHHHHHHHHHHhc
Confidence 588888888755431 2788999999999999995 599999999999988887776655
Q ss_pred h
Q 025774 78 M 78 (248)
Q Consensus 78 ~ 78 (248)
.
T Consensus 147 ~ 147 (152)
T 2lrt_A 147 H 147 (152)
T ss_dssp G
T ss_pred c
Confidence 4
No 189
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=93.90 E-value=0.098 Score=35.01 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=40.4
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.+...|++... .++..|++..+|++.+ +|.. ++.|..+.+++...|...
T Consensus 34 ~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~----~G~~--~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 34 AVEVEYINVMENP--QKAMEYGIMAVPTIVI----NGDV--EFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp SEEEEEEESSSSC--CTTTSTTTCCSSEEEE----TTEE--ECCSSSSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCH--HHHHHCCCcccCEEEE----CCEE--eeecCCCHHHHHHHHHHh
Confidence 7888888886543 4678899999999988 4765 788988999887777654
No 190
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=93.86 E-value=0.18 Score=36.27 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHH
Q 025774 31 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 31 eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L 74 (248)
+...++..|++..+|+++++. +|..+.++.|..+.++|...|
T Consensus 75 ~~~~~~~~~~i~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 75 DLQAFRSRYGIPTVPGFVHIT--DGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp HHHHHHHHHTCCSSCEEEEEE--TTEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeEEEEE--CCEEEEEecCCCCHHHHHHHh
Confidence 345788999999999998884 688889999999998886654
No 191
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.82 E-value=0.21 Score=44.55 Aligned_cols=69 Identities=7% Similarity=0.143 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhc--CCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI 243 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v 243 (248)
...+|.||..+|+.+.-.+..++||.+|...|.... .+.+....+|+. -.+. | ++++||.++|+. +++|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy--~GK~--L--~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKI--L--SDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSE--E--CSSSBTTTTCCCTTSCE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE--CCee--c--CCcCCHHHcCCCCCCEE
Confidence 457899999999999989999999999999998742 356677888875 3553 6 457999999998 4555
No 192
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=93.82 E-value=0.32 Score=42.23 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 246 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v~ 246 (248)
++..+|.||..+|+.+.-.+..++||.+|-.-|.... +.++...+|+.. .+. | ++++||.+.|+. +++|.+.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~-GIp~~~QRLi~~--Gk~--L--~D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEeC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence 3567899999999999999999999999999998764 667778888753 443 5 458999999998 5666553
No 193
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=93.76 E-value=0.3 Score=35.12 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=40.8
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 75 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~ 75 (248)
++.|...|++.. ..++..|++..+|+++++ .+|..+.++.|.. +++|...|.
T Consensus 61 ~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 61 DVRFVKCDVDES--PDIAKECEVTAMPTFVLG--KDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp TSEEEEEETTTC--HHHHHHTTCCSBSEEEEE--ETTEEEEEEESSC-HHHHHHHHH
T ss_pred CCEEEEEECCCC--HHHHHHCCCCcccEEEEE--eCCeEEEEEeCCC-HHHHHHHHH
Confidence 378888888643 358899999999998876 4689999999988 777765554
No 194
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=93.65 E-value=0.34 Score=34.19 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=41.6
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.|...|++. +...++..|++..+|++++ . .+|..+.++.|.. ++++...|..+
T Consensus 55 ~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~-~-~~G~~~~~~~G~~-~~~l~~~l~~~ 109 (111)
T 2pu9_C 55 DVIFLKLDCNQ-ENKTLAKELGIRVVPTFKI-L-KENSVVGEVTGAK-YDKLLEAIQAA 109 (111)
T ss_dssp TSEEEEEECSS-TTHHHHHHHCCSBSSEEEE-E-SSSSEEEEEESSC-HHHHHHHHHHH
T ss_pred CeEEEEEecCc-chHHHHHHcCCCeeeEEEE-E-eCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 48888888863 3356888999999999554 4 5688899999984 77777666554
No 195
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=93.55 E-value=0.12 Score=39.47 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=47.3
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceE---------EeeeC-CCChHHHHHHHhhhhhc
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM---------RSWCG-MVQPESLLEDLVPFMDG 80 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l---------~~~~G-~~~~e~l~~~L~~~~~~ 80 (248)
..+.|+..|++.. ..++..|++..+|++.+.. +|..+ .++.| ..+.++|...|...+..
T Consensus 54 ~~~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~--~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~ 122 (149)
T 3gix_A 54 KMAAIYLVDVDQT--AVYTQYFDISYIPSTVFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRG 122 (149)
T ss_dssp TTEEEEEEETTTC--CHHHHHTTCCSSSEEEEEE--TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCcC--HHHHHHcCCCccCeEEEEE--CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHH
Confidence 3489999998643 4588999999999999553 58888 88999 88999988888777653
No 196
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=93.55 E-value=0.082 Score=37.69 Aligned_cols=56 Identities=9% Similarity=0.179 Sum_probs=43.2
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceE--EeeeCCCChHHHHHHHhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM--RSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l--~~~~G~~~~e~l~~~L~~~~ 78 (248)
++++...|.+... .++..|++..+|++.++. +|..+ ..+.|..+.++|...|...+
T Consensus 59 ~v~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~--~g~~~~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 59 EIRLAKVDATEES--DLAQQYGVRGYPTIKFFR--NGDTASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp CCBCEEEETTTCC--SSHHHHTCCSSSEEEEEE--SSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred cEEEEEEcCCCCH--HHHHHCCCCcccEEEEEe--CCCcCCcccccCccCHHHHHHHHHhcc
Confidence 5778888876432 567889999999999993 57766 78899999998877766554
No 197
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=93.54 E-value=0.013 Score=44.27 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
+|.|+..+|+.+.-.+..++||.+|-.-|... .+.++...+|+. -.+. + +++.||.+.|+. +++|.+
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L--~D~~tL~~~~I~~gsti~l 69 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHL 69 (128)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-hCcChHHEEEEE--CCEE--C--CCCCchhhhccCCCCEEEE
Confidence 46788899999888999999999999998875 355677777764 3443 5 558999999998 455544
No 198
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.48 E-value=0.31 Score=38.25 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
...|.|+..+|+.+.-++..++||.+|-.-|.... +.++...+|+.. .+. + +++.||.+.|+. +++|.+
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~q~L~~~--g~~--L--~D~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHL 165 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEET--TEE--C--CTTSBSGGGTCCTTCEEEE
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHh-CCCceeEEEEEC--Ccc--C--CCCCcHHHhCCCCCCEEEE
Confidence 46788899999999999999999999999998764 667888888753 332 5 458899999998 566654
No 199
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=93.41 E-value=0.36 Score=38.84 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=46.1
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
.++.+...|++.. ..++..|++..+|++.++. +|..+.++.|..+.++|...|...+
T Consensus 169 ~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 169 GKILGDMVEAIEY--PEWADQYNVMAVPKIVIQV--NGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp CCEEEEEEEGGGC--HHHHHHTTCCSSCEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEEEEcccC--HHHHHhCCCcccCeEEEEe--CCceeEEEcCCCCHHHHHHHHHHhh
Confidence 3788888888643 4578899999999987773 6888889999999998888777654
No 200
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=93.32 E-value=0.35 Score=34.89 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=41.8
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++.+...|++. +...++..|++..+|++.+. .+|..+.++.|.. ++++...|...
T Consensus 68 ~~~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 68 DVIFLKLDCNQ-ENKTLAKELGIRVVPTFKIL--KENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp TSEEEEEECSS-TTHHHHHHHCCSSSSEEEEE--ETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred CCEEEEEecCc-chHHHHHHcCCCeeeEEEEE--eCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 47888888853 34568889999999996665 4688899999975 77776666554
No 201
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=93.31 E-value=0.24 Score=37.88 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHHHHhcCCCCCc---------------eEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~~~P---------------~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..++..|++...| .++||++ +|.++.++.|..+++++...|...+..+
T Consensus 104 ~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 166 (171)
T 2rli_A 104 AQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP-DGLFTDYYGRSRSAEQISDSVRRHMAAF 166 (171)
T ss_dssp HHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT-TSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4688899998888 8899995 5999999999999999999988887754
No 202
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=93.27 E-value=0.62 Score=34.43 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
...+.|.|+-.+|+.+.-+...++++..|++...... +.+...++|... ... + +.+.|.+++|+. +..|-|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~-Gl~~~~irFlFD--G~r--I--~~~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEV 109 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCTTSEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHh-CCChhhEEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEE
Confidence 4578899999999999999999999999998776653 556778888654 332 5 568999999998 455533
No 203
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.26 E-value=0.49 Score=33.37 Aligned_cols=74 Identities=14% Similarity=-0.013 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCC-CCcc-ccCCCcCCCccccCCcC-ceEEE
Q 025774 170 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIP-GATK-SLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 170 ~~~i~iRlp~G~-r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~P-r~~~-~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
.++|.|+..++. .+.+++..++||..|-.-+... .|.++...+|....+ .+.. .+ .++++||.+.|+.+ ++|.|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-~gip~~~qrL~~~~~~g~~~~~l-~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-VGSPASCMELELYGADDKFYSKL-DQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-TCSCTTTCBCEEECSSSCEEEEC-CCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-HCCCHHHeEEEEeCCCCcccccc-CCCcCCHhHCCCCCCCEEEE
Confidence 477888876654 6899999999999999999886 577788888876532 2210 12 25689999999984 55544
No 204
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=92.37 E-value=0.015 Score=40.63 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=42.1
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
.++.+...|++. ...++..|++..+|++.++ .+|..+.++.|..+.+++...|..
T Consensus 50 ~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 2yj7_A 50 GKVKVVKVNVDE--NPNTAAQYGIRSIPTLLLF--KNGQVVDRLVGAQPKEALKERIDK 104 (106)
Confidence 356777776643 4467889999999999988 468888889998888877665554
No 205
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=93.21 E-value=0.26 Score=40.09 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=50.6
Q ss_pred HhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 15 TISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 15 ~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
-+..++.|..+|++.. ..++..|++..+|+++++. +|..+.++.|..+.++|...|...+...
T Consensus 58 ~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 120 (222)
T 3dxb_A 58 EYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLFK--NGEVAATKVGALSKGQLKEFLDANLAGS 120 (222)
T ss_dssp HTTTTCEEEEEETTTC--TTTGGGGTCCSBSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred HhcCCcEEEEEECCCC--HHHHHHcCCCcCCEEEEEE--CCeEEEEeccccChHHHHHHHHhhcccc
Confidence 3344688888888643 2467899999999999884 6889999999999999998888887654
No 206
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.12 E-value=0.5 Score=34.00 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEEE
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 246 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v~ 246 (248)
...+.+++ +|+.+.-.+..++||.+|-.-|... .+.++..-+|. .||... + +++.+|.++|+.+ ++|++.
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~-tgIpp~~QkLi-~~~~gk--L--~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENE-LQIPVSKMLLK-GWKTGD--V--EDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHH-HCCCTTTCCEE-CCSSSC--C--CTTSBHHHHCCCSEEEEEEC
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHH-HCCChhHeEEE-ccCCCC--C--CCcCCHHHcCCCCCCEEEEE
Confidence 45677777 6677778899999999999999875 46566666663 355553 5 4589999999985 555553
No 207
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=92.77 E-value=0.78 Score=34.25 Aligned_cols=59 Identities=25% Similarity=0.485 Sum_probs=43.6
Q ss_pred ceEEEEEecCChH-----------------------HHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHh
Q 025774 19 NFIFWQVYDDTSE-----------------------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 75 (248)
Q Consensus 19 ~fV~w~~d~~~~e-----------------------g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~ 75 (248)
++.+.+.+++... ...++..|++..+|+++||++ +|.++.+. ++++++...|.
T Consensus 62 ~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~ 137 (152)
T 2lrn_A 62 GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDP-EGKIVAKE---LRGDDLYNTVE 137 (152)
T ss_dssp TEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECT-TSEEEEEC---CCTTHHHHHHH
T ss_pred CeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECC-CCeEEEee---CCHHHHHHHHH
Confidence 4888888876422 467889999999999999995 58887765 35567766676
Q ss_pred hhhhcC
Q 025774 76 PFMDGG 81 (248)
Q Consensus 76 ~~~~~~ 81 (248)
..+...
T Consensus 138 ~l~~~~ 143 (152)
T 2lrn_A 138 KFVNGA 143 (152)
T ss_dssp HHHTSS
T ss_pred HHHhhc
Confidence 666643
No 208
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=92.68 E-value=0.29 Score=32.02 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=34.9
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCC-ChHHHHHH
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV-QPESLLED 73 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~-~~e~l~~~ 73 (248)
..++.+...| ...++..|++..+|++.+ +|..+.. |.. +.+++...
T Consensus 29 ~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~----~G~~~~~--G~~~~~~~l~~~ 75 (77)
T 1ilo_A 29 GIDAEFEKIK-----EMDQILEAGLTALPGLAV----DGELKIM--GRVASKEEIKKI 75 (77)
T ss_dssp TCCEEEEEEC-----SHHHHHHHTCSSSSCEEE----TTEEEEC--SSCCCHHHHHHH
T ss_pred CCceEEEEec-----CHHHHHHCCCCcCCEEEE----CCEEEEc--CCCCCHHHHHHH
Confidence 3467777777 345788999999999988 5877665 987 88877654
No 209
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=92.57 E-value=0.97 Score=35.00 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=45.1
Q ss_pred cceEEEEEecCCh---HHHHHHHhcCCC-----------------------CCceEEEEeCCCCceEEeeeCCCC--hHH
Q 025774 18 TNFIFWQVYDDTS---EGKKVCTYYKLD-----------------------SIPVVLVVDPITGQKMRSWCGMVQ--PES 69 (248)
Q Consensus 18 ~~fV~w~~d~~~~---eg~~~~~~~~~~-----------------------~~P~l~ii~~~~g~~l~~~~G~~~--~e~ 69 (248)
.++.+.+.+++.. ....++..|++. .+|+++||++ +|.++.++.|..+ .++
T Consensus 92 ~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~ 170 (186)
T 1jfu_A 92 PNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASED 170 (186)
T ss_dssp TTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHH
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECC-CCCEEEEEecCCccCHHH
Confidence 3677777776543 345666666653 7999999995 5999999999875 778
Q ss_pred HHHHHhhhhhc
Q 025774 70 LLEDLVPFMDG 80 (248)
Q Consensus 70 l~~~L~~~~~~ 80 (248)
+...|...+..
T Consensus 171 l~~~l~~ll~~ 181 (186)
T 1jfu_A 171 ALKLIRAATGK 181 (186)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 88777777653
No 210
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=92.52 E-value=1 Score=33.38 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccC-CCCcc-ccCCCcCCCccccCCcC-ceEE
Q 025774 169 LLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATK-SLDYDSKLTFEDSGLAN-AMIS 244 (248)
Q Consensus 169 ~~~~i~iRlp~G~-r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~-Pr~~~-~l~~d~~~tl~d~gl~~-~~v~ 244 (248)
+.++|.|+-.++. .+.++|..++||..|-.-|... .|.++...+|...- ..+.. .+ .+.++||.+.|+.+ ++|+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-~Gip~~~qrL~~~g~~~~~~~~l-~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-VGTTVDSMRIQLFDGDDQLKGEL-TDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-HCCCTTTEEEEEECSSSSEEEEC-CCCSSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-hCCCHHHeEEEEecCCCcccccc-CCCcCCHHHCCCCCCCEEE
Confidence 3678888877664 6899999999999999999886 47778888887532 11210 12 25689999999984 5565
Q ss_pred EE
Q 025774 245 VT 246 (248)
Q Consensus 245 v~ 246 (248)
|+
T Consensus 83 vv 84 (122)
T 1t0y_A 83 AV 84 (122)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 211
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=92.40 E-value=0.31 Score=36.81 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=45.5
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEE---------eeeCCCC-hHHHHHHHhhhhhc
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---------SWCGMVQ-PESLLEDLVPFMDG 80 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~---------~~~G~~~-~e~l~~~L~~~~~~ 80 (248)
+..++.|...|++... .++..|++..+|++.++. +|..+. ++.|.++ .++|...|...+..
T Consensus 52 ~~~~v~~~~vd~d~~~--~~~~~~~i~~~Pt~~~~~--~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~ 122 (142)
T 1qgv_A 52 VKNFAVIYLVDITEVP--DFNKMYELYDPCTVMFFF--RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG 122 (142)
T ss_dssp HTTTEEEEEEETTTCC--TTTTSSCSCSSCEEEEEE--TTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEccccCH--HHHHHcCCCCCCEEEEEE--CCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence 3346899999987543 478899999999999884 577665 4667664 88888888877764
No 212
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=92.21 E-value=0.5 Score=35.29 Aligned_cols=43 Identities=16% Similarity=0.344 Sum_probs=34.2
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
..++..|++..+|++.||++ +|.++.+.. +++++...|...+.
T Consensus 106 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 106 SEVAKQYSIYKIPANILLSS-DGKILAKNL---RGEELKKKIENIVE 148 (150)
T ss_dssp CHHHHHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHHH
T ss_pred hHHHHHcCCCccCeEEEECC-CCEEEEccC---CHHHHHHHHHHHHh
Confidence 36888999999999999995 588877653 77888777776654
No 213
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=92.20 E-value=0.87 Score=36.99 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=54.1
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
+...+.|+|+. +|+.+..+...++++..|++..... .|.+...++|... .+. + +.+.|.+++|+. +.+|-|
T Consensus 26 ~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er-~Gi~~~~~RF~Fd--G~r--I--~~~~TP~dL~MEdgD~Idv 97 (200)
T 3pge_A 26 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA 97 (200)
T ss_dssp CCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHH-HSSCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred CCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHH-hCCChhhEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 35578899986 9999999999999999999876554 3666778888654 433 5 568999999998 455544
No 214
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=92.13 E-value=0.47 Score=35.86 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=44.1
Q ss_pred cceEEEEEecCC-----------------hHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCC--hHHHHHHHhh
Q 025774 18 TNFIFWQVYDDT-----------------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ--PESLLEDLVP 76 (248)
Q Consensus 18 ~~fV~w~~d~~~-----------------~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~--~e~l~~~L~~ 76 (248)
.++.+...+.+. .....++..|++..+|+++||++ +|.++.++.|..+ .++++..+..
T Consensus 73 ~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~G~~~~~~~~~~~~~~~ 149 (158)
T 3hdc_A 73 GDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDR-KGIIRQRVTGGIEWDAPKVVSYLKS 149 (158)
T ss_dssp TSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred CCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEEEEcC-CCCEEEEEeCCCccchHHHHHHHHh
Confidence 368888888765 12346889999999999999995 6999999999764 4566665544
No 215
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.86 E-value=0.49 Score=33.41 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=53.5
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 243 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v 243 (248)
.|-|..|||.|.+-+...+.++.+|.+=+-.+. +.++..|.|... ++ .+ |.+..+-=.||.| +.|
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~-gl~~~~~~Lkh~--~k--~l--DLSlpfRlsgLpnnAkL 76 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQ-DFNPSEYDLKFQ--RT--VL--DLSLQWRFANLPNNAKL 76 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHT-TCCGGGCEEEET--TE--EE--SSSCBHHHHCCCSSCEE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHh-CCChhhCeEEeC--CE--ec--cccceeEecCCCCCCEE
Confidence 789999999999999999999999887665554 667899999875 33 25 8899999999985 444
No 216
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=91.76 E-value=0.51 Score=36.91 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEe---------eeCCCChHHHHHHHhhhhhcC
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRS---------WCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~---------~~G~~~~e~l~~~L~~~~~~~ 81 (248)
.++..|++..+|+++||++ +|.++.+ ..|..+.+++...|...+...
T Consensus 121 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 121 EVAKAYDAACTPDFYIFDR-DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp HHHHHHTCCEESEEEEEET-TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCCCeEEEEcC-CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 5778899999999999995 5888877 457788999999888888754
No 217
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=91.75 E-value=0.7 Score=37.84 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=49.7
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCC--C--CceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI--T--GQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~--~--g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
++.|...|++..+...++..|++..+|++.++.+- . |..+ .+.| .+++.+...|...+..+
T Consensus 65 ~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~ 129 (244)
T 3q6o_A 65 ALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESH 129 (244)
T ss_dssp TEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTC
T ss_pred cEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhc
Confidence 79999999987778899999999999999999852 1 2233 5667 58999999999988865
No 218
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=91.72 E-value=0.28 Score=38.46 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=47.2
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceE--E-------eeeCCCC-hHHHHHHHhhhhhc
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM--R-------SWCGMVQ-PESLLEDLVPFMDG 80 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l--~-------~~~G~~~-~e~l~~~L~~~~~~ 80 (248)
...+|+.+|++.. ..++..|++.+.|+++++- +|+.+ . ++.|..+ .++|...|..++..
T Consensus 72 ~~v~f~kVDVDe~--~e~a~~y~V~siPT~~fFk--~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~ 140 (160)
T 2av4_A 72 NFCVIYLVDITEV--PDFNTMYELYDPVSVMFFY--RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRG 140 (160)
T ss_dssp TTEEEEEEETTTC--CTTTTTTTCCSSEEEEEEE--TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCC--HHHHHHcCCCCCCEEEEEE--CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHH
Confidence 4589999999743 3589999999999998884 47765 5 8999887 88888888777653
No 219
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=91.71 E-value=0.39 Score=35.72 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=46.2
Q ss_pred EEEEcCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc
Q 025774 173 VGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 239 (248)
Q Consensus 173 i~iRlp~G~-r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~ 239 (248)
|.|+.-.|+ .+.-....++||..|-.-|... .|.++...+|+.+ .+. + ++++||.|.|+.
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~-egIP~~qQrLi~~--Gk~--L--eD~~TLsdy~I~ 63 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPEEQRLYKD--DQL--L--DDGKTLGECGFT 63 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTSBHHHHTCC
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--C--CCCCCHHHcCcc
Confidence 444444565 4777889999999999999875 4677889999843 443 5 668999999998
No 220
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=91.67 E-value=0.89 Score=42.24 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=53.0
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCC--CCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI--TGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~--~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
.+.|...|++..+...++..|++..||++.++.+- .|..+....|..+++.+...|...+..+
T Consensus 65 ~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~ 129 (519)
T 3t58_A 65 ALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESH 129 (519)
T ss_dssp TEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTC
T ss_pred cEEEEEEECCccccHHHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhc
Confidence 69999999987778899999999999999999851 3555566677789999999999988865
No 221
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=91.62 E-value=0.033 Score=43.46 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
.|.|+..+|+.+.-.+..++||.+|-.-|... .+.++...+|+. -.+. | +++.||.+.|+. +++|.+
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L--~D~~tL~dygI~~gstL~L 69 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHL 69 (152)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEE--c--cccCcHHHcCCCCCCEEEE
Confidence 57788899998888899999999999999775 355677777764 3443 5 457999999998 455544
No 222
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=91.59 E-value=0.26 Score=35.37 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=41.4
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce-EEeeeCCCChHHHHHHHhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK-MRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~-l~~~~G~~~~e~l~~~L~~~~ 78 (248)
++.|...|++..+ ++. ++..+|++.++.+ .|.. +.++.|..+.++|...|...+
T Consensus 62 ~v~~~~vd~~~~~---~~~--~v~~~Pt~~~~~~-~~~~~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 62 RVVIAKVDATAND---VPD--EIQGFPTIKLYPA-GAKGQPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp SSEEEEEETTTSC---CSS--CCSSSSEEEEECS-SCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred ceEEEEEECcccc---ccc--ccCcCCeEEEEeC-cCCCCceEecCCCCHHHHHHHHHhcc
Confidence 7899999987655 444 8999999999974 3443 677899999998877766554
No 223
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=91.56 E-value=0.51 Score=34.05 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=42.6
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCC--CCceEEeeeCCCChHHHHHHHhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI--TGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~--~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
.++.|...|++.. ..++..|++..+|++.++... .|..+.++.|..+. ++...+..+.
T Consensus 53 ~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~~G~~~~-~l~~~~~~~~ 112 (118)
T 2f51_A 53 KDVTFIKVDVDKN--GNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVS-RIKADIEKFK 112 (118)
T ss_dssp TTSEEEEEETTTC--HHHHHHTTCCSSSEEEEEEEETTEEEEEEEEESCCHH-HHHHHHHHHC
T ss_pred CCeEEEEEECCCC--HHHHHhcCCCCCCEEEEEeCCCCcceEEEeecCCCHH-HHHHHHHHhh
Confidence 4788999988654 457899999999999999531 27789999997654 4555554443
No 224
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=91.41 E-value=0.2 Score=44.30 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
..++..|++..+|.++||++ +|.++.++.|..+.+++...|...+..
T Consensus 154 ~~l~~~ygV~~~Pt~~lID~-~G~Iv~~~~G~~~~~~l~~~I~~lL~e 200 (352)
T 2hyx_A 154 YATWTNYRNRYWPAEYLIDA-TGTVRHIKFGEGDYNVTETLVRQLLND 200 (352)
T ss_dssp SHHHHHTTCCEESEEEEECT-TSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEeC-CCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 35778899999999999995 699999999999999998888888764
No 225
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=91.36 E-value=0.16 Score=38.67 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=42.6
Q ss_pred HHHHHHhhcceE-EEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCC-ChHHHHHHHhhhh
Q 025774 10 EAVSQTISTNFI-FWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPFM 78 (248)
Q Consensus 10 ~~v~~~l~~~fV-~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~-~~e~l~~~L~~~~ 78 (248)
+.+.+|++++=+ -|..-.+ ...++..|++..+|+++||++ +|.++. .|.. +.+++...|...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~v~~~P~~~lid~-~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 99 EMFRKFIANYGDPSWIMVMD---DGSLVEKFNVRSIDYIVIMDK-SSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp HHHHHHHHHHSCTTSEEEEC---CSHHHHHTTCCSSSEEEEEET-TCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCCeeEEeC---hHHHHHHhCCCCceEEEEEcC-CCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 455666665222 2222222 236888999999999999995 588777 8888 8888877776654
No 226
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=91.19 E-value=0.81 Score=37.01 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=52.5
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceEEE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 245 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v~v 245 (248)
+...+.|.|+. +|+.+.-+...+++|..|++..... .+.+...++|... ... + +.+.|.+++++.. .+|-|
T Consensus 54 p~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcER-qGL~~~sIRFLFD--GqR--I--~~ddTPeDLdMEDGDtIDV 125 (207)
T 3tix_A 54 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLTFLYD--GIE--I--QADQTPEDLDMEDNDIIEA 125 (207)
T ss_dssp -CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-TTCCGGGSCEEET--TEE--C--CSSCCTTTTTCCTTEEEEE
T ss_pred CCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHH-hCCCcccEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEE
Confidence 35578888884 9999999999999999999877554 3556667776543 332 4 5689999999984 44433
No 227
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=90.95 E-value=1.1 Score=32.57 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=53.1
Q ss_pred CCCCCCCceEEEEEcCC--C--ceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCC
Q 025774 163 PKVDRSLLCRVGVRLPD--G--RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 238 (248)
Q Consensus 163 P~~~~~~~~~i~iRlp~--G--~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl 238 (248)
|..-+++.++++|.+-| | ..+.-.+..++||..|-+-+.... |.++..-+|+.+ ++ + .+++.||.+.|+
T Consensus 15 ~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~-Gipp~~QRli~g--gk---l-l~D~~TL~~ygI 87 (105)
T 4dbg_A 15 PEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDY-GFPPVLQQWVIG--QR---L-ARDQETLHSHGV 87 (105)
T ss_dssp -----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TE---E-ECTTCBTGGGTC
T ss_pred CCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHh-CCCHHHEEEecc--Ce---E-ccCcCcHHHcCC
Confidence 33344456777777755 3 578889999999999999998764 777878887754 43 4 256899999999
Q ss_pred c--CceEEE
Q 025774 239 A--NAMISV 245 (248)
Q Consensus 239 ~--~~~v~v 245 (248)
. ++++.+
T Consensus 88 ~~~G~t~hL 96 (105)
T 4dbg_A 88 RQNGDSAYL 96 (105)
T ss_dssp CSTTCEEEE
T ss_pred CCCCCEEEE
Confidence 4 555543
No 228
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=90.93 E-value=0.75 Score=33.37 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=41.9
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce-EEeeeCCCChHHHHHHHhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK-MRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~-l~~~~G~~~~e~l~~~L~~ 76 (248)
.++.+...|.+.. ..++..|++..||++.++.+ .+.. ...+.|..+.++|..-|..
T Consensus 69 ~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~-g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 69 LTFVAARIDGEKY--PDVIERMRVSGFPTMRYYTR-IDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp TTEEEEEEETTTC--HHHHHHTTCCSSSEEEEECS-SCSSSCEECCSCCCHHHHHHHHHH
T ss_pred CCeEEEEEEcccc--HhHHHhcCCccCCEEEEEeC-CCCCCceEecCCccHHHHHHHHHh
Confidence 4688888988643 46889999999999999964 2232 2568899999888665543
No 229
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=90.91 E-value=1.3 Score=35.38 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=46.2
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce-EEeeeCCCChHHHHHHHhhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK-MRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~-l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.++.|...|++.++...++..|++..+|++.++. .|.. ..++.|..+.+++...+...++
T Consensus 53 ~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~~G~~~~~~l~~~l~~~l~ 113 (226)
T 1a8l_A 53 DKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ--DGKDFGVRYFGLPAGHEFAAFLEDIVD 113 (226)
T ss_dssp TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE--TTBCCSEEEESCCCTTHHHHHHHHHHH
T ss_pred CceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc--CCceeeEEEeccCcHHHHHHHHHHHHh
Confidence 3688889999887788999999999999999984 3554 3678898777776665555443
No 230
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=90.90 E-value=0.84 Score=39.01 Aligned_cols=66 Identities=14% Similarity=0.293 Sum_probs=50.4
Q ss_pred HHHHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCc-----------------eEEeeeCCCChHHHHHHH
Q 025774 12 VSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ-----------------KMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 12 v~~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~-----------------~l~~~~G~~~~e~l~~~L 74 (248)
+.+-+...+.+..++++..+...++..|++..||++.++.+ |. ....+.|..+.+.++.-+
T Consensus 60 la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl 137 (298)
T 3ed3_A 60 AAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRP--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFS 137 (298)
T ss_dssp HHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEEC--CCC-------------CCCEEEECCSCCSHHHHHHHH
T ss_pred HHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEEC--CceeecccccccccccccccceeecCCcCHHHHHHHH
Confidence 33344456778888887667788999999999999999974 43 356788999999987777
Q ss_pred hhhhh
Q 025774 75 VPFMD 79 (248)
Q Consensus 75 ~~~~~ 79 (248)
...+.
T Consensus 138 ~~~~~ 142 (298)
T 3ed3_A 138 LSRIR 142 (298)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 66654
No 231
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=90.14 E-value=0.22 Score=36.99 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=33.2
Q ss_pred cceEEEEEecCChH-H---------------------HHHHHhcCCCCCceEEEEeCCCCceEEeeeC
Q 025774 18 TNFIFWQVYDDTSE-G---------------------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCG 63 (248)
Q Consensus 18 ~~fV~w~~d~~~~e-g---------------------~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G 63 (248)
.++.+++.+.+... . ..++..|++..+|+++||++ +|.++.+..|
T Consensus 66 ~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~ 132 (142)
T 3eur_A 66 KKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDK-NKTVLLKDAT 132 (142)
T ss_dssp TSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECT-TCBEEEEEEC
T ss_pred CCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECC-CCcEEecCCC
Confidence 46777777776542 1 23678899999999999995 5888877654
No 232
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=89.96 E-value=0.54 Score=35.81 Aligned_cols=60 Identities=15% Similarity=0.296 Sum_probs=43.3
Q ss_pred ceEEEEEecCChH-------------------HHHHHHhcCCCC----CceEEEEeCCCCceEEeeeCCCChHHHHHHHh
Q 025774 19 NFIFWQVYDDTSE-------------------GKKVCTYYKLDS----IPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 75 (248)
Q Consensus 19 ~fV~w~~d~~~~e-------------------g~~~~~~~~~~~----~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~ 75 (248)
++.+.+.+.++.+ ...++..|++.. +|.++||++ +|.++..+.|...++..+..+.
T Consensus 63 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~il 141 (161)
T 3drn_A 63 DVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITFVIDK-KGIIRHIYNSQMNPANHVNEAL 141 (161)
T ss_dssp CEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECT-TSBEEEEEECSSCTTHHHHHHH
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCcccceEEEECC-CCEEEEEEecCCCCCcCHHHHH
Confidence 5777777776543 236778899988 999999995 5999999999665554445544
Q ss_pred hhhh
Q 025774 76 PFMD 79 (248)
Q Consensus 76 ~~~~ 79 (248)
..++
T Consensus 142 ~~l~ 145 (161)
T 3drn_A 142 KALK 145 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 233
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=89.78 E-value=0.55 Score=34.53 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 36 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 36 ~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
+..|++..+|+++||++ +|.++. |.++.+++...|..
T Consensus 102 ~~~~~v~~~P~~~lid~-~G~i~~---~~~~~~~l~~~l~~ 138 (142)
T 3ewl_A 102 RQLYDIRATPTIYLLDG-RKRVIL---KDTSMEQLIDYLAT 138 (142)
T ss_dssp TTCSCCCSSSEEEEECT-TCBEEE---CSCCHHHHHHHHHC
T ss_pred HHHcCCCCCCeEEEECC-CCCEEe---cCCCHHHHHHHHHH
Confidence 34899999999999995 588765 55778877665554
No 234
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=89.76 E-value=1.2 Score=35.89 Aligned_cols=55 Identities=5% Similarity=0.213 Sum_probs=43.7
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
++.+...|++. ...++..|++..+|++.+ +|. +.++.|..+.++|...|...+..
T Consensus 167 ~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~----~G~-~~~~~G~~~~~~l~~~l~~~~~~ 221 (229)
T 2ywm_A 167 YITSKVIDASE--NQDLAEQFQVVGVPKIVI----NKG-VAEFVGAQPENAFLGYIMAVYEK 221 (229)
T ss_dssp TEEEEEEEGGG--CHHHHHHTTCCSSSEEEE----GGG-TEEEESCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCC--CHHHHHHcCCcccCEEEE----CCE-EEEeeCCCCHHHHHHHHHHHhhh
Confidence 67888888754 345788999999999988 477 56799999999998888777653
No 235
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=89.69 E-value=1.1 Score=32.88 Aligned_cols=67 Identities=7% Similarity=0.077 Sum_probs=49.3
Q ss_pred ccCCCH------HHHHHhh-cceEEEEEecCChHH--HHHHHhcCCCC-CceEEEEeCCCCceEEe-eeCCCChHHHHHH
Q 025774 5 DTWANE------AVSQTIS-TNFIFWQVYDDTSEG--KKVCTYYKLDS-IPVVLVVDPITGQKMRS-WCGMVQPESLLED 73 (248)
Q Consensus 5 ~vl~~~------~v~~~l~-~~fV~w~~d~~~~eg--~~~~~~~~~~~-~P~l~ii~~~~g~~l~~-~~G~~~~e~l~~~ 73 (248)
.+||-+ .+.++.+ .+.-|+..|+...-. -.++..|++.+ -|.++++ ++|+.++. ..|.++.+.|...
T Consensus 33 atwCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~--k~G~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 33 SETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYF--VNGEMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEE--ETTEEEEEEEGGGCSHHHHHHH
T ss_pred CCcCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEE--ECCEEEEEeeccccCHHHHHHh
Confidence 467765 4444543 468888888865433 45899999995 9999999 56999988 6688999877543
No 236
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=89.68 E-value=1.3 Score=35.73 Aligned_cols=56 Identities=9% Similarity=0.254 Sum_probs=45.7
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 20 FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 20 fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
+.+...|.+.. ..++..|++..+|++.++. .|..+ ...|..+.+++...+...+..
T Consensus 68 ~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~g~~~-~~~g~~~~~~l~~~i~~~~~~ 123 (241)
T 3idv_A 68 IPVAKIDATSA--SVLASRFDVSGYPTIKILK--KGQAV-DYEGSRTQEEIVAKVREVSQP 123 (241)
T ss_dssp CCEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TTEEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred eEEEEEeccCC--HHHHHhcCCCcCCEEEEEc--CCCcc-cccCcccHHHHHHHHhhccCc
Confidence 88888888644 4688999999999999995 47766 588999999998888777654
No 237
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=89.45 E-value=0.72 Score=33.56 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=43.3
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce-EEeee-CCCChHHHHHHHhhhhhcC
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK-MRSWC-GMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~-l~~~~-G~~~~e~l~~~L~~~~~~~ 81 (248)
.+++|..+|++... .++..|++..+|++.++.+ .+.+ ...+. |..+.++|...|...+...
T Consensus 58 ~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~-g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 58 KDLVIAKMDATAND--ITNDQYKVEGFPTIYFAPS-GDKKNPIKFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp SSEEEEEECTTTSC--CCCSSCCCSSSSEEEEECT-TCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred CCEEEEEecCCcCH--HHHhhcCCCcCCEEEEEeC-CCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence 36899999886543 3456799999999999963 2332 12355 6688999988888776643
No 238
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=89.43 E-value=1.1 Score=38.96 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcc-CCCCccccCCCcCCCccccCCc-CceEEE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-~Pr~~~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
..++|.|+. +|+.+.-....++||.+|-.-+... .|.++..-+|+.. |.++. + +++.||.++|+. +++|++
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~-tgVpp~~QkLi~~k~~Gk~--l--~D~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRK-TQVRPERQKLLNLKYKGKT--A--ADNVKISALELKPNFKLMM 76 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGCEETTCBSSSSB--C--CTTSBTTSSCCC--CEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEeecccCCcc--c--CccccHHHcCCCCCCEEEE
Confidence 357888887 7888999999999999999999875 4777888888743 44443 4 458999999998 566654
No 239
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=89.22 E-value=0.69 Score=34.25 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=44.8
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCC--CceEEEEeCCCCceEEeee--CCCChHHHHHHHhhhhhc
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPITGQKMRSWC--GMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~--~P~l~ii~~~~g~~l~~~~--G~~~~e~l~~~L~~~~~~ 80 (248)
.+.|...|++.. ..++..|++.+ .|.++++....|.. ..+. |.++.+.+..-|..+++.
T Consensus 54 k~~f~~vd~d~~--~~~a~~~gi~~~~iPtl~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~G 116 (133)
T 2djk_A 54 VINFGTIDAKAF--GAHAGNLNLKTDKFPAFAIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVAG 116 (133)
T ss_dssp TSEEEEECTTTT--GGGTTTTTCCSSSSSEEEEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred eEEEEEEchHHh--HHHHHHcCCCcccCCEEEEEecCcCcc-cCCCCccccCHHHHHHHHHHHHcC
Confidence 577778887633 35888999998 99999997434655 3554 999999888888888774
No 240
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=89.20 E-value=3.3 Score=29.47 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=52.3
Q ss_pred CCceEEEEEcCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcCceEE
Q 025774 168 SLLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 244 (248)
Q Consensus 168 ~~~~~i~iRlp~G~-r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~~v~ 244 (248)
+..++|.++-++|+ .+..+-..+.+++.|++...... +.....++|... ... + +.+.|.+++|+...-++
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~-g~~~~~vrF~FD--G~r--I--~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM-GLSGRKLSFFFD--GTK--L--SGRELPADLGMESGDLI 93 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHT-TCSSSCCEEEET--TEE--C--CSCSCHHHHTCCTTEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHH-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEE
Confidence 45788999999995 78889999999999999765543 445667777553 332 4 56889999999854444
No 241
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=89.19 E-value=0.2 Score=36.37 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=47.0
Q ss_pred HHHHHhhc--ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 11 AVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 11 ~v~~~l~~--~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.+.++... ++.|...|++.. ..++..|++..+|++.++ .+|..+.++.| .+++++...|...+..
T Consensus 57 ~l~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 123 (130)
T 1wmj_A 57 VFAEYAKKFPGAVFLKVDVDEL--KEVAEKYNVEAMPTFLFI--KDGAEADKVVG-ARKDDLQNTIVKHVGA 123 (130)
T ss_dssp HHHHHHHHCTTBCCEECCTTTS--GGGHHHHTCCSSCCCCBC--TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred HHHHHHHHCCCCEEEEEeccch--HHHHHHcCCCccceEEEE--eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence 44444443 577777777543 357788999999998776 56888888999 4778887777776654
No 242
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=88.93 E-value=1.4 Score=33.71 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=24.6
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEee
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSW 61 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~ 61 (248)
..++..|++..+|+++||++.+|.++.+.
T Consensus 118 ~~l~~~~~v~~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 118 EALTKKYSVESIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp HHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCEEEecc
Confidence 68899999999999999997558877653
No 243
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=88.26 E-value=2 Score=37.24 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=48.6
Q ss_pred HHHHHhhc-ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 11 AVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 11 ~v~~~l~~-~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.+.+.+.. ++.+..+|++.. ..++..|++..||++.++. .|. +....|..+.+.++..+...+.
T Consensus 58 ~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i~~~~~ 122 (350)
T 1sji_A 58 LVAQVLEHKDIGFVMVDAKKE--AKLAKKLGFDEEGSLYVLK--GDR-TIEFDGEFAADVLVEFLLDLIE 122 (350)
T ss_dssp HHHHHGGGSSEEEEEEETTTT--HHHHHHHTCCSTTEEEEEE--TTE-EEEECSCCCHHHHHHHHHTTSS
T ss_pred HHHHHHhhcCcEEEEEeCCCC--HHHHHhcCCCccceEEEEE--CCc-EEEecCCCCHHHHHHHHHHhcC
Confidence 34445555 589999998754 4688999999999999993 576 5578999999988776665543
No 244
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.14 E-value=0.74 Score=33.95 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=38.2
Q ss_pred ceEEEEEecCChHHHHHHHhcCCC------CCceEEEEeCCCCceEEeeeCCCChHHH
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMVQPESL 70 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~~~e~l 70 (248)
++.|...|++.. ..++..|++. .+|++.++ .+|..+.++.|..+.+++
T Consensus 59 ~v~~~~vd~~~~--~~~~~~~~v~~~~~~~~~Pt~~~~--~~G~~~~~~~G~~~~~~l 112 (137)
T 2dj0_A 59 GLNFGKVDVGRY--TDVSTRYKVSTSPLTKQLPTLILF--QGGKEAMRRPQIDKKGRA 112 (137)
T ss_dssp SCEEEECCTTTC--HHHHHHTTCCCCSSSSCSSEEEEE--SSSSEEEEESCBCSSSCB
T ss_pred CeEEEEEeCccC--HHHHHHccCcccCCcCCCCEEEEE--ECCEEEEEecCcCchHHH
Confidence 789988888643 4578899998 99999988 468888889897766543
No 245
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=87.98 E-value=1.2 Score=33.09 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=44.5
Q ss_pred EEcCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC
Q 025774 175 VRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 240 (248)
Q Consensus 175 iRlp~G~-r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~ 240 (248)
||+..|+ .+.-....++||..|-.-|... .+.++..-+|+.+ .+. + ++++||+|.|+.+
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~-~giPp~qQrLI~~--Gk~--L--eD~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPDEQRLYKD--DQL--L--DDGKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHH-HCCCHHHeEEEeC--CeE--C--CCcCCHHHcCCCc
Confidence 3344444 6677788999999999999875 4677888899853 442 5 6699999999975
No 246
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=87.90 E-value=2.1 Score=31.38 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=33.2
Q ss_pred cceEEEEEecCCh----------------------HHHHHHHhcCCCCCceEEEEeCCCCceEEee
Q 025774 18 TNFIFWQVYDDTS----------------------EGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 61 (248)
Q Consensus 18 ~~fV~w~~d~~~~----------------------eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~ 61 (248)
.++.+..++++.. ....++..|++..+|+++||++.+|.++.+.
T Consensus 61 ~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 61 KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp TTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEecc
Confidence 3677777777642 2467899999999999999995568876543
No 247
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=87.71 E-value=2 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCCceEEEEeCCCCceEEee
Q 025774 32 GKKVCTYYKLDSIPVVLVVDPITGQKMRSW 61 (248)
Q Consensus 32 g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~ 61 (248)
...++..|++..+|+++||++.+|.++.+.
T Consensus 97 ~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 97 VQKLSKHFNVESIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHHHHHhCCCCCCEEEEEECCCCeEEEec
Confidence 467899999999999999995568876653
No 248
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.60 E-value=1.7 Score=32.08 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=40.8
Q ss_pred HHHHHhhc--ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCC-------ChHHHHHHHh
Q 025774 11 AVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV-------QPESLLEDLV 75 (248)
Q Consensus 11 ~v~~~l~~--~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~-------~~e~l~~~L~ 75 (248)
.+.++... ++.|...|++... ..|++..+|+++++. +|..+.++.|.. +.++|...|.
T Consensus 51 ~l~~la~~~~~v~~~~vd~~~~~-----~~~~i~~~Pt~~~~~--~G~~v~~~~G~~~~~~~~~~~~~l~~~l~ 117 (135)
T 2dbc_A 51 HLSVLARKFPETKFVKAIVNSCI-----EHYHDNCLPTIFVYK--NGQIEGKFIGIIECGGINLKLEELEWKLS 117 (135)
T ss_dssp HHHHHHHHCSSEEEEEECCSSSC-----SSCCSSCCSEEEEES--SSSCSEEEESTTTTTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEEEhhcCc-----ccCCCCCCCEEEEEE--CCEEEEEEEeEEeeCCCcCCHHHHHHHHH
Confidence 34444443 5788888887543 689999999998884 699999999975 4555544443
No 249
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=87.53 E-value=2 Score=33.06 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCC---------CCCceEEEEeCCCCceEEeeeCC-CChHHHHHHHhhhhhcC
Q 025774 30 SEGKKVCTYYKL---------DSIPVVLVVDPITGQKMRSWCGM-VQPESLLEDLVPFMDGG 81 (248)
Q Consensus 30 ~eg~~~~~~~~~---------~~~P~l~ii~~~~g~~l~~~~G~-~~~e~l~~~L~~~~~~~ 81 (248)
.+...+++.|++ ...|.+.||++ .|.++..+.|. .+++++...|.+..-..
T Consensus 104 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~-~G~i~~~~~g~~~~~~~i~~~l~~~~~~~ 164 (170)
T 3me7_A 104 EDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP-ELQIKDYIYGVNYNYLEFVNALRLARGEG 164 (170)
T ss_dssp HHHHHHHHHTTCCCEEETTEEECCCEEEEECT-TSBEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHCCeEEecCCCccccCceEEEECC-CCeEEEEEeCCCCCHHHHHHHHHHhhccc
Confidence 455677777653 45688999996 59988888986 67889988888876543
No 250
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=87.30 E-value=1.9 Score=37.95 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=47.1
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEE-eeeCCCChHHHHHHHhhhhhc
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR-SWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~-~~~G~~~~e~l~~~L~~~~~~ 80 (248)
++++..+|++.. ..++..|++..||++.++. +|..+. ...|..+.+.++..+...+..
T Consensus 60 ~v~~~~Vd~~~~--~~l~~~~~v~~~Pt~~~f~--~G~~~~~~~~G~~~~~~l~~~i~~~~~~ 118 (382)
T 2r2j_A 60 QVVFARVDCDQH--SDIAQRYRISKYPTLKLFR--NGMMMKREYRGQRSVKALADYIRQQKSD 118 (382)
T ss_dssp CEEEEEEETTTC--HHHHHHTTCCEESEEEEEE--TTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred ceEEEEEECCcc--HHHHHhcCCCcCCEEEEEe--CCcEeeeeecCcchHHHHHHHHHHhccC
Confidence 488888888654 5688999999999999874 588776 489999999998888877653
No 251
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=87.00 E-value=2.1 Score=31.28 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCCceEEEEeCCCCceEEee
Q 025774 32 GKKVCTYYKLDSIPVVLVVDPITGQKMRSW 61 (248)
Q Consensus 32 g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~ 61 (248)
...++..|++..+|+++||++.+|.++.+.
T Consensus 97 ~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 97 VSELGKTFGVESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHHHHHHTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHHHHHcCCCCCCEEEEEECCCCeEEecc
Confidence 467889999999999999995568876653
No 252
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=86.37 E-value=1.5 Score=34.53 Aligned_cols=44 Identities=7% Similarity=0.166 Sum_probs=34.5
Q ss_pred HHHHhcCCC-----CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhhh
Q 025774 34 KVCTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 78 (248)
Q Consensus 34 ~~~~~~~~~-----~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~~ 78 (248)
.++..|++. .+|+++||++ +|.++.++.|.. ++++++..|....
T Consensus 108 ~~~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 160 (198)
T 1zof_A 108 SISRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDALL 160 (198)
T ss_dssp HHHHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 577888998 9999999995 599999888865 5667776666554
No 253
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=86.33 E-value=3.1 Score=33.32 Aligned_cols=55 Identities=7% Similarity=0.213 Sum_probs=43.5
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 20 FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 20 fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+.|...|++.. ..++..|++..+|++.++. .|..+. ..|..+.++++..|...+.
T Consensus 183 v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~g~~~~-~~g~~~~~~l~~~l~~~~~ 237 (241)
T 3idv_A 183 IPLAKVDATAE--TDLAKRFDVSGYPTLKIFR--KGRPYD-YNGPREKYGIVDYMIEQSG 237 (241)
T ss_dssp CCEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred EEEEEEECCCC--HHHHHHcCCcccCEEEEEE--CCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence 78888888654 3588999999999999986 477665 8899999998877766543
No 254
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=86.29 E-value=1.1 Score=34.35 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=34.5
Q ss_pred hcCCCCCc------eEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 38 YYKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 38 ~~~~~~~P------~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.|++..+| .++||++ +|.++.++.|..+++++...|...+.
T Consensus 122 ~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (171)
T 3cmi_A 122 KSGMLGLRGIKWNFEKFLVDK-KGKVYERYSSLTKPSSLSETIEELLK 168 (171)
T ss_dssp SCCSSSCCSCCSTTCEEEECS-SSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred cCCcCCCCcccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46788899 8999995 59999999999999988888877765
No 255
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=86.26 E-value=1.3 Score=40.05 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=49.3
Q ss_pred HHHhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 13 SQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 13 ~~~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.+-+...+.|...|.+. ...++..|++..||++.++ ++|..+....|..+.+.++..+...+.
T Consensus 47 a~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~~--~~g~~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 47 ATRLKGIVPLAKVDCTA--NTNTCNKYGVSGYPTLKIF--RDGEEAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp HHHTTTTCCEEEEETTT--CHHHHHHTTCCEESEEEEE--ETTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred HHHhcCceEEEEEECCC--CHHHHHhcCCCCCCEEEEE--eCCceeeeecCccCHHHHHHHHHhhcc
Confidence 34444557777888764 4568899999999999988 458888889999999998888777654
No 256
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=85.85 E-value=0.97 Score=33.98 Aligned_cols=49 Identities=14% Similarity=-0.011 Sum_probs=37.0
Q ss_pred ceEEEEEecCChH---------------------HHHHHHhcCCC----CCc--eEEEEeCCCCceEEeeeCCCChH
Q 025774 19 NFIFWQVYDDTSE---------------------GKKVCTYYKLD----SIP--VVLVVDPITGQKMRSWCGMVQPE 68 (248)
Q Consensus 19 ~fV~w~~d~~~~e---------------------g~~~~~~~~~~----~~P--~l~ii~~~~g~~l~~~~G~~~~e 68 (248)
++.+++.++++.+ ...++..|++. .+| .++||++ +|.++.+..|..+.+
T Consensus 70 ~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~-~G~i~~~~~g~~~~~ 145 (160)
T 1xvw_A 70 DSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR-SGIIRFAEMKQPGEV 145 (160)
T ss_dssp SEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECT-TSBEEEEEECCTTCC
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECC-CCeEEEEEecCCCCC
Confidence 5777777776543 34578889987 899 8999995 599999988876443
No 257
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=85.69 E-value=1.5 Score=38.02 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=41.9
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 75 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~ 75 (248)
++++...|.+... +..|++..||++.++....|..+..+.|..+.++|+..|.
T Consensus 301 ~v~~~~vd~~~~~----~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~ 353 (361)
T 3uem_A 301 NIVIAKMDSTANE----VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 353 (361)
T ss_dssp SEEEEEEETTTCB----CSSCCCCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHT
T ss_pred cEEEEEEECCccc----hhhcCCcccCeEEEEECCCCcceeEecCCCCHHHHHHHHH
Confidence 4899999988766 5789999999999996443566788999999988855443
No 258
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=85.55 E-value=2.2 Score=32.97 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEe--------eeCCCChHHHHHHHhhhhhcC
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRS--------WCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~--------~~G~~~~e~l~~~L~~~~~~~ 81 (248)
.++..|++..+|+++||++ +|.++.+ ..|..+.+++...|...+...
T Consensus 107 ~~~~~~~v~~~P~~~lid~-~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 107 EVAKAYRALRTPEVFLFDE-RRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp HHHHHTTCCEESEEEEECT-TCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred hHHHHcCCCCCCeEEEECC-CCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence 5778899999999999995 5887766 113346788888888887654
No 259
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=85.03 E-value=1.1 Score=35.33 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=35.9
Q ss_pred HHHHhcCCC-----CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhhhh
Q 025774 34 KVCTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 79 (248)
Q Consensus 34 ~~~~~~~~~-----~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~~~ 79 (248)
.++..|++. .+|+++||++ +|.++.++.|.. ++++++..|.....
T Consensus 117 ~~~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 117 ELSQAAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDALQS 170 (195)
T ss_dssp HHHHHHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred HHHHHhCCcccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 567778888 9999999995 599999888865 67888877776654
No 260
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=84.97 E-value=3.3 Score=34.06 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=44.5
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
.++.+...|++... .++..|++.++|++.+ +|..+ ..|..+.++|+..|...+..+
T Consensus 173 ~~v~~~~vd~~~~~--~~~~~~~V~~vPt~~i----~G~~~--~~G~~~~~~l~~~l~~~~~~~ 228 (243)
T 2hls_A 173 PVILSEAVEAYENP--DIADKYGVMSVPSIAI----NGYLV--FVGVPYEEDFLDYVKSAAEGR 228 (243)
T ss_dssp CCEEEEEEETTTCH--HHHHHTTCCSSSEEEE----TTEEE--EESCCCHHHHHHHHHHHHTTC
T ss_pred CcEEEEEEECccCH--HHHHHcCCeeeCeEEE----CCEEE--EeCCCCHHHHHHHHHHHhhcc
Confidence 46888888886543 5778899999999987 57754 889999999999888887653
No 261
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=84.87 E-value=0.82 Score=35.22 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=42.5
Q ss_pred ceEEEEEecCChHHHHHHHhcCC--CCCceEEEEeCCCCceEEeeeCC----------CChHHHHHHHhhhhhcC
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKL--DSIPVVLVVDPITGQKMRSWCGM----------VQPESLLEDLVPFMDGG 81 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~--~~~P~l~ii~~~~g~~l~~~~G~----------~~~e~l~~~L~~~~~~~ 81 (248)
+|+...++..... ++..|.+ ..+|+++++++ +|..+.++.|. .++++|+..|...++..
T Consensus 80 ~~~~v~~d~~~~~---~~~~~~~~~~~~Pt~~~~d~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 150 (164)
T 1sen_A 80 NFVMVNLEDEEEP---KDEDFSPDGGYIPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150 (164)
T ss_dssp TSEEEEEEGGGSC---SCGGGCTTCSCSSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCchH---HHHHhcccCCcCCeEEEECC-CCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence 4555554443221 4566777 66999999984 58888888884 78899999999888764
No 262
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=84.85 E-value=3 Score=37.90 Aligned_cols=62 Identities=11% Similarity=0.229 Sum_probs=49.2
Q ss_pred HHhhc-ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce--EEeeeCCCChHHHHHHHhhhhh
Q 025774 14 QTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 14 ~~l~~-~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~--l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+-+.. ++.|..+|.+.. ..++..|++..||++.++. +|.. +....|..+.+.++..|...+.
T Consensus 58 ~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~g~~~~~~~~~G~~~~~~l~~~l~~~~~ 122 (504)
T 2b5e_A 58 ETLVEKNITLAQIDCTEN--QDLCMEHNIPGFPSLKIFK--NSDVNNSIDYEGPRTAEAIVQFMIKQSQ 122 (504)
T ss_dssp HHTTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred HHhccCCeEEEEEECCCC--HHHHHhcCCCcCCEEEEEe--CCccccceeecCCCCHHHHHHHHHHhcC
Confidence 33444 488999998654 5689999999999999985 4765 8889999999999888776654
No 263
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=84.57 E-value=2.6 Score=34.99 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=44.7
Q ss_pred ceEEEEEecCC---hHHHHHHHhcCCC--CCceEEEEeCCCCc--eEEeeeCCCChHHHHHHHhhhh
Q 025774 19 NFIFWQVYDDT---SEGKKVCTYYKLD--SIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 19 ~fV~w~~d~~~---~eg~~~~~~~~~~--~~P~l~ii~~~~g~--~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
+++|..+|++. .+-..++..|++. .||++.++. .|. .+..+.|..+.+.|+..|....
T Consensus 54 ~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PTl~~f~--~G~~~~~~~y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 54 DLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFR--DGDFENPVPYTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp TEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSEEEEEE--TTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred CeEEEEEeCCcccchhhHHHHHHcCCCCCCCCEEEEEe--CCCcCcceeecCCCCHHHHHHHHHHhc
Confidence 68999999753 2346689999999 999999985 355 3567889999988877766553
No 264
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=84.56 E-value=4.3 Score=30.57 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=31.5
Q ss_pred cCCCCCceEEEEeCCCCceEEeeeCCC--ChHHHHHHHhhhhh
Q 025774 39 YKLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD 79 (248)
Q Consensus 39 ~~~~~~P~l~ii~~~~g~~l~~~~G~~--~~e~l~~~L~~~~~ 79 (248)
|.+...|.++||++ +|.++.++.|.. ++++++..|...+.
T Consensus 131 ~~~~~~p~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 131 DQVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSAST 172 (174)
T ss_dssp CSCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred CeeeeeeEEEEECC-CCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 34567899999995 599999999976 47888888877654
No 265
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=84.50 E-value=2.5 Score=33.46 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=36.8
Q ss_pred HHHHHhcCCC-CC---------------ceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLD-SI---------------PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~-~~---------------P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..+++.|++. .. |.+.||++ +|.++..+.|..+++.+...|...+...
T Consensus 118 ~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~-~G~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 118 KNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp HHHHHHTTC--------------CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHcCcEEeeccccCCCCCceeeecceEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4577778775 33 37899995 5999999999999999999998888764
No 266
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=84.39 E-value=0.83 Score=34.64 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCCCceEEEEeCCCCceEEeeeCCC--ChHHHHHHHhhh
Q 025774 41 LDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF 77 (248)
Q Consensus 41 ~~~~P~l~ii~~~~g~~l~~~~G~~--~~e~l~~~L~~~ 77 (248)
+..+|++.||+ +|.++.++.|.. +++++...|...
T Consensus 135 i~~~P~~~lid--~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 135 VDHTATTFVVK--EGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp EEECCCEEEEE--TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred EecCCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 35789999999 699999999988 888888877654
No 267
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=84.27 E-value=5.1 Score=30.94 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=45.4
Q ss_pred ceEEEEEecCChH-----------------------HHHHHHhcCCC------CCceEEEEeCCCCceEEeeeCCC----
Q 025774 19 NFIFWQVYDDTSE-----------------------GKKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV---- 65 (248)
Q Consensus 19 ~fV~w~~d~~~~e-----------------------g~~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~---- 65 (248)
++.+++.++++.+ ...++..|++. .+|+++||++ +|.++.++.|..
T Consensus 65 ~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~ 143 (187)
T 1we0_A 65 GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGR 143 (187)
T ss_dssp TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCC
T ss_pred CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECC-CCeEEEEEecCCCCCC
Confidence 6777887776532 23567788887 8999999995 599999888865
Q ss_pred ChHHHHHHHhhhhh
Q 025774 66 QPESLLEDLVPFMD 79 (248)
Q Consensus 66 ~~e~l~~~L~~~~~ 79 (248)
++++++..|.....
T Consensus 144 ~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 144 DASTLINKVKAAQY 157 (187)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 67888877776654
No 268
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=83.48 E-value=3.8 Score=34.18 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=45.5
Q ss_pred ceEEEEEecCC---hHHHHHHHhcCCC--CCceEEEEeCCCCc--eEEee--eCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDT---SEGKKVCTYYKLD--SIPVVLVVDPITGQ--KMRSW--CGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~---~eg~~~~~~~~~~--~~P~l~ii~~~~g~--~l~~~--~G~~~~e~l~~~L~~~~~ 79 (248)
+++|..+|++. .+...++..|++. .||++.++- |. ....+ .|..+.+.|...|...+.
T Consensus 66 ~v~~akVD~d~~g~~~n~~la~~~~V~~~~~PTl~~F~---G~~~~~~~y~~~G~~~~~~L~~fi~~~~~ 132 (248)
T 2c0g_A 66 DLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFK---GNADEYVQLPSHVDVTLDNLKAFVSANTP 132 (248)
T ss_dssp SEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEEEES---SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred CeEEEEEECCcccccccHHHHHHhCCCcCCCCeEEEEe---CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence 68999999875 2256799999999 999999884 55 25556 899999988777776654
No 269
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=82.71 E-value=4.6 Score=32.24 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=44.7
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
..++.+...|.+. ...++..|++..||++.++. .|....++.|..+.+++...+...+.
T Consensus 57 ~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~~~--~~~~~~~~~G~~~~~~l~~~~~~~~~ 115 (229)
T 2ywm_A 57 QDKIKLDIYSPFT--HKEETEKYGVDRVPTIVIEG--DKDYGIRYIGLPAGLEFTTLINGIFH 115 (229)
T ss_dssp TTTEEEEEECTTT--CHHHHHHTTCCBSSEEEEES--SSCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred CCceEEEEecCcc--cHHHHHHcCCCcCcEEEEEC--CCcccceecCCccHHHHHHHHHHHHh
Confidence 4567888888754 46789999999999999984 35667778998888877666655543
No 270
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=81.83 E-value=4.5 Score=35.32 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=45.4
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
++.|..+|++.. ..++..|++..||++.++. +|..+ ...|..+.+.++.-+...+.
T Consensus 69 ~v~~~~Vd~~~~--~~l~~~~~V~~~PTl~~f~--~G~~~-~y~G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 69 GVGFGLVDSEKD--AAVAKKLGLTEEDSIYVFK--EDEVI-EYDGEFSADTLVEFLLDVLE 124 (367)
T ss_dssp TEEEEEEETTTT--HHHHHHHTCCSTTEEEEEE--TTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred CceEEEEeCccc--HHHHHHcCCCcCceEEEEE--CCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence 588888988753 4689999999999999985 47654 78899999998887776654
No 271
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=81.64 E-value=4.9 Score=33.47 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=44.4
Q ss_pred cceEEEEEecCChHH-------------------------HHHHHhcCCC-------CCceEEEEeCCCCceEEeeeCCC
Q 025774 18 TNFIFWQVYDDTSEG-------------------------KKVCTYYKLD-------SIPVVLVVDPITGQKMRSWCGMV 65 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg-------------------------~~~~~~~~~~-------~~P~l~ii~~~~g~~l~~~~G~~ 65 (248)
.++.++++++++.+. ..++..|++. .+|.++||++ +|.+...+.|..
T Consensus 66 ~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~-dG~I~~~~~~~~ 144 (249)
T 3a2v_A 66 LGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPM 144 (249)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECT-TSBEEEEEEECT
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECC-CCeEEEEEecCC
Confidence 478888888876541 2477788886 8999999996 488888777754
Q ss_pred ----ChHHHHHHHhhhh
Q 025774 66 ----QPESLLEDLVPFM 78 (248)
Q Consensus 66 ----~~e~l~~~L~~~~ 78 (248)
+.++++..|....
T Consensus 145 ~~gr~~~Ellr~I~alq 161 (249)
T 3a2v_A 145 ELGRLVDEILRIVKALK 161 (249)
T ss_dssp TBCCCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHH
Confidence 5678777766553
No 272
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=81.13 E-value=1.7 Score=32.67 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=31.1
Q ss_pred CCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 41 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 41 ~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
+..+|.++||++ +|.++.++.|..+++++...|...+.
T Consensus 130 i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 167 (169)
T 2v1m_A 130 IKWNFSKFLVDR-QGQPVKRYSPTTAPYDIEGDIMELLE 167 (169)
T ss_dssp CCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred ccccceEEEECC-CCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence 445689999995 69999999999999988888877664
No 273
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=80.80 E-value=4.3 Score=31.55 Aligned_cols=44 Identities=9% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHhcCCC-----CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhhh
Q 025774 34 KVCTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 78 (248)
Q Consensus 34 ~~~~~~~~~-----~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~~ 78 (248)
.++..|++. .+|.++||++ +|.++....|.. +.++++..|....
T Consensus 106 ~~~~~~gv~~~~g~~~P~~~liD~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 106 SIARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDALQ 158 (192)
T ss_dssp HHHHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred HHHHHhCCcCcCCceeeEEEEEcC-CCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 577889998 8999999995 589888887753 3567776666554
No 274
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=80.80 E-value=1.2 Score=34.65 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 42 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 42 ~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
..+|.++||++ +|.++.++.|..+++++...|..
T Consensus 148 ~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ 181 (183)
T 2obi_A 148 KWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPH 181 (183)
T ss_dssp CSTTCEEEECT-TSCEEEEECTTSCTHHHHTTSGG
T ss_pred cccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHH
Confidence 44699999995 69999999999998887655543
No 275
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=80.69 E-value=3.1 Score=30.32 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=33.0
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCC
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 65 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~ 65 (248)
+..|...|++.. +..|++.+.|+++++ ++|..+.++.|..
T Consensus 54 ~v~f~kvd~d~~-----~~~~~v~~~PT~~~f--k~G~~v~~~~G~~ 93 (118)
T 3evi_A 54 ETKFVKAIVNSC-----IQHYHDNCLPTIFVY--KNGQIEAKFIGII 93 (118)
T ss_dssp TSEEEEEEGGGT-----STTCCGGGCSEEEEE--ETTEEEEEEESTT
T ss_pred CCEEEEEEhHHh-----HHHCCCCCCCEEEEE--ECCEEEEEEeChh
Confidence 467788888653 588999999999998 4699999999965
No 276
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=80.04 E-value=3.9 Score=32.24 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHhcCCC------CCceEEEEeCCCCceEEeeeCCCC----hHHHHHHHhhhh
Q 025774 34 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMVQ----PESLLEDLVPFM 78 (248)
Q Consensus 34 ~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~~----~e~l~~~L~~~~ 78 (248)
.++..|++. .+|.++||++ +|.++.++.|..+ .++++..|....
T Consensus 111 ~~~~~ygv~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 111 CIMKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp HHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCccCCCCceeeEEEEECC-CCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 567778888 8999999995 5898888777543 477777766554
No 277
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=79.99 E-value=2.8 Score=32.68 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=34.2
Q ss_pred cCCCCCc------eEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 39 YKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 39 ~~~~~~P------~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
|++..+| .++||++ +|.++.++.|..+++++...|...+..
T Consensus 140 ~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 186 (190)
T 2vup_A 140 PGILKTKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEKKLIPLLES 186 (190)
T ss_dssp CCGGGCCSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred CCcCCCccccccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 4666678 8999985 599999999999999998888888764
No 278
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=79.96 E-value=5.6 Score=31.99 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHhcCCC------CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhhhh
Q 025774 34 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 79 (248)
Q Consensus 34 ~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~~~ 79 (248)
.++..|++. .+|.++||++ +|.++.++.|.. +.++++..|.....
T Consensus 131 ~i~~~ygv~~~~~g~~~P~~~liD~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~~ 185 (220)
T 1zye_A 131 QISRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAFQF 185 (220)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCeecCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 577888888 8999999996 589888877764 44777777766543
No 279
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=79.88 E-value=5.6 Score=27.25 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=39.0
Q ss_pred HHHHHhhc---ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 11 AVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 11 ~v~~~l~~---~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.+..+|++ .+ +...|++... .++..|++. .|.+.+ .+|+.+. |..+.+++...|...++.
T Consensus 16 ~~~~~L~~~~~~~-~~~vdid~~~--~l~~~~g~~-vPtl~~---~~G~~v~---g~~~~~~L~~~l~~~~~~ 78 (87)
T 1ttz_A 16 QAVEALAQARAGA-FFSVFIDDDA--ALESAYGLR-VPVLRD---PMGRELD---WPFDAPRLRAWLDAAPHA 78 (87)
T ss_dssp HHHHHHHHTTCCC-EEEEECTTCH--HHHHHHTTT-CSEEEC---TTCCEEE---SCCCHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh-eEEEECCCCH--HHHHHhCCC-cCeEEE---ECCEEEe---CCCCHHHHHHHHHHHHHH
Confidence 44555553 22 4567886533 367788987 999877 3477664 888888887777665543
No 280
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=79.62 E-value=2.5 Score=32.91 Aligned_cols=40 Identities=15% Similarity=0.353 Sum_probs=32.0
Q ss_pred CCCCCc---eEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 40 KLDSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 40 ~~~~~P---~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
++..+| .++||++ +|.++.++.|..+++++...|...+..
T Consensus 142 ~~~~iP~~~~~~liD~-~G~i~~~~~g~~~~~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 142 ATKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEEKLIPLLGS 184 (187)
T ss_dssp SSSSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred CCCccccceeEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 445677 9999995 699999999999999998888877653
No 281
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=79.59 E-value=9.5 Score=30.60 Aligned_cols=61 Identities=18% Similarity=0.319 Sum_probs=40.6
Q ss_pred cceEEEEEecCChHHHHHHHhcCCC--CCceEEEEeCCCCceEEee-eCCCChHHHHHHHhhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSW-CGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~--~~P~l~ii~~~~g~~l~~~-~G~~~~e~l~~~L~~~~~ 79 (248)
.++.|--.|.+..+...++..|++. .+|.++|+...++. ...+ .|.++++.+..-+..+++
T Consensus 162 ~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~-ky~~~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 162 GKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDE-WDTLPTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp TTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCC-EEEETTCCCCHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCc-cccCCcCCCCHHHHHHHHHHHhC
Confidence 4566666677654555678999997 79999999865442 2223 367888877665555543
No 282
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=79.56 E-value=9.2 Score=28.46 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=30.4
Q ss_pred CCCc---eEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 42 DSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 42 ~~~P---~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
..+| +++||++ +|.++.++.|..+++++...|...+.
T Consensus 129 ~~~p~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (170)
T 2p5q_A 129 DDIQWNFAKFLVNK-DGQVVDRYYPTTSPLSLERDIKQLLE 168 (170)
T ss_dssp SCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred CcccccccEEEECC-CCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence 5678 8999985 59999999999999888887777654
No 283
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=79.32 E-value=1.2 Score=36.30 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=34.7
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCCh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP 67 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~ 67 (248)
++.|...|++ ...++..|++..+|+++++. +|..+.++.|..+.
T Consensus 151 ~v~f~~vd~~---~~~l~~~~~i~~~PTl~~~~--~G~~v~~~~G~~~~ 194 (217)
T 2trc_P 151 MVKFCKIRAS---NTGAGDRFSSDVLPTLLVYK--GGELISNFISVAEQ 194 (217)
T ss_dssp TSEEEEEEHH---HHTCSTTSCGGGCSEEEEEE--TTEEEEEETTGGGG
T ss_pred CeEEEEEECC---cHHHHHHCCCCCCCEEEEEE--CCEEEEEEeCCccc
Confidence 5777888875 33477789999999999884 68999999997653
No 284
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=78.23 E-value=6.6 Score=37.74 Aligned_cols=60 Identities=13% Similarity=0.270 Sum_probs=46.9
Q ss_pred HhhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 15 TISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 15 ~l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
-++.+++|...|.+.. ..++..|++..+|++.++. .|.. ....|..+.+++..-+..+++
T Consensus 483 ~~~~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~--~g~~-~~~~g~~~~~~l~~fi~~~~~ 542 (780)
T 3apo_A 483 LLYGQLKVGTLDCTIH--EGLCNMYNIQAYPTTVVFN--QSSI-HEYEGHHSAEQILEFIEDLRN 542 (780)
T ss_dssp HTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TTEE-EEECSCSCHHHHHHHHHHHHS
T ss_pred HhcCCeEEEEEeCCCC--HHHHHHcCCCcCCeEEEEc--CCce-eeecCcccHHHHHHHHHhhcc
Confidence 3345788999998643 3488999999999999994 3655 678899999988877777765
No 285
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=78.14 E-value=7.8 Score=30.94 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeee---------CCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWC---------GMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~---------G~~~~e~l~~~L~~~~~~~ 81 (248)
..++..|++..+|.++||++ +|.++.+.. |..+.+++...|...+...
T Consensus 133 ~~~~~~~~v~~~P~~~liD~-~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~ 189 (218)
T 3u5r_E 133 QSVAKAYGAACTPDFFLYDR-ERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK 189 (218)
T ss_dssp CHHHHHHTCCEESEEEEECT-TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred cHHHHHcCCCCCCeEEEECC-CCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence 46788899999999999995 588765421 2456788888888887654
No 286
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=77.48 E-value=3.6 Score=37.01 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=44.9
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCc-eEEeeeCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ-KMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~-~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
++++...|++.. .++..|++..||++.++. .+|. .+.+..|..+.++|+..|.....
T Consensus 404 ~v~~~~id~~~~---~~~~~~~v~~~Pt~~~~~-~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 461 (481)
T 3f8u_A 404 NIVIAKMDATAN---DVPSPYEVRGFPTIYFSP-ANKKLNPKKYEGGRELSDFISYLQREAT 461 (481)
T ss_dssp SEEEEEEETTSS---CCCTTCCCCSSSEEEEEC-TTCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred CEEEEEEECCch---hhHhhCCCcccCEEEEEe-CCCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence 699999999776 467789999999998885 3344 26778999999998777766544
No 287
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=77.19 E-value=1.5 Score=32.33 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHH
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L 74 (248)
.++..|++..+|+.+||++ +|.++.+. ++++++...|
T Consensus 104 ~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l 140 (143)
T 4fo5_A 104 ELYKKYDLRKGFKNFLIND-EGVIIAAN---VTPEKLTEIL 140 (143)
T ss_dssp HHHHHTTGGGCCCEEEECT-TSBEEEES---CCHHHHHHHH
T ss_pred HHHHHcCCCCCCcEEEECC-CCEEEEcc---CCHHHHHHHH
Confidence 5778899999999999995 58877664 3466655444
No 288
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=76.72 E-value=7.3 Score=33.45 Aligned_cols=62 Identities=16% Similarity=0.375 Sum_probs=45.7
Q ss_pred hcceEEEEEecCChHHHHHHHhcCCCC--CceEEEEeCCCCceEEeee---CCCChHHHHHHHhhhhhc
Q 025774 17 STNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~~~~~~~~~~~--~P~l~ii~~~~g~~l~~~~---G~~~~e~l~~~L~~~~~~ 80 (248)
+..+.|...|.+..+...++..|++.. +|.+.++... ..+.... |..+++.+..-+..+++.
T Consensus 165 ~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~--~~~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 165 KGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLE--EEMTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp TTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC----CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred cCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcC--CcccccCCCccccCHHHHHHHHHHHhcC
Confidence 346778888887666788999999987 9999999752 2223333 678999888878777764
No 289
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=76.66 E-value=6.6 Score=30.65 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=32.9
Q ss_pred HHHHhcCCC------CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhh
Q 025774 34 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPF 77 (248)
Q Consensus 34 ~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~ 77 (248)
.++..|++. .+|.++||++ +|.++.++.|.. +.++++..|...
T Consensus 109 ~~~~~~gv~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~e~l~~l~~l 161 (197)
T 1qmv_A 109 RLSEDYGVLKTDEGIAYRGLFIIDG-KGVLRQITVNDLPVGRSVDEALRLVQAF 161 (197)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHHcCCccCCCCceeeEEEEECC-CCcEEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 577888887 7999999995 589888888865 357777666554
No 290
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=76.45 E-value=2 Score=31.01 Aligned_cols=42 Identities=12% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHhh---cceEEEEEecCC-----hHHHHHHHhcCCCCCceEEEEeC
Q 025774 11 AVSQTIS---TNFIFWQVYDDT-----SEGKKVCTYYKLDSIPVVLVVDP 52 (248)
Q Consensus 11 ~v~~~l~---~~fV~w~~d~~~-----~eg~~~~~~~~~~~~P~l~ii~~ 52 (248)
.+.++.+ .++.|..+|++. .+...++..|++..+|++.++..
T Consensus 52 ~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~~~~~~ 101 (123)
T 1wou_A 52 VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGT 101 (123)
T ss_dssp HHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTS
T ss_pred HHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCeeCEEEEEcC
Confidence 3444444 379999999942 12234777899999999999864
No 291
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=76.27 E-value=11 Score=29.93 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=33.8
Q ss_pred HHHHhcCCC-----CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhhh
Q 025774 34 KVCTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 78 (248)
Q Consensus 34 ~~~~~~~~~-----~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~~ 78 (248)
.++..|++. .+|.++||++ +|.++.+..|.. +.++++..|....
T Consensus 127 ~~~~~ygv~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 127 SISKDYNVLFDDSVSLRAFVLIDM-NGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp HHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCccccCCcccEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 577788888 8999999995 589888877654 3778877776554
No 292
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=75.86 E-value=13 Score=32.43 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCC---CccccCCCcCCCccccCCc
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPG---ATKSLDYDSKLTFEDSGLA 239 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr---~~~~l~~d~~~tl~d~gl~ 239 (248)
....+.|.||||+...-.+..+.++++|++-|..++.-....-|.|...-+. .......+.++++.+-|..
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE 157 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence 3467999999999999999999999999999988865334667888764331 1011113567888777654
No 293
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=75.70 E-value=4.8 Score=28.47 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHH
Q 025774 31 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLED 73 (248)
Q Consensus 31 eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~ 73 (248)
+...++..|++..+|++.| +|.. +.|..+.++|...
T Consensus 54 ~~~~l~~~~~V~~~PT~~i----~G~~---~~G~~~~~~l~~~ 89 (106)
T 3kp8_A 54 PQAQECTEAGITSYPTWII----NGRT---YTGVRSLEALAVA 89 (106)
T ss_dssp CCCHHHHHTTCCSSSEEEE----TTEE---EESCCCHHHHHHH
T ss_pred hhHHHHHHcCCeEeCEEEE----CCEE---ecCCCCHHHHHHH
Confidence 4567889999999999776 4653 8899998887544
No 294
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=74.56 E-value=4.4 Score=39.03 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=46.4
Q ss_pred hhcceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeC----CCChHHHHHHHhhhhhcC
Q 025774 16 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 16 l~~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G----~~~~e~l~~~L~~~~~~~ 81 (248)
+..++.|...|++.. ..++..|++..+|+++++ ..|..+.++.| ..+.+++...|...+.+.
T Consensus 704 ~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~ 769 (780)
T 3apo_A 704 IKGKVRAGKVDCQAY--PQTCQKAGIKAYPSVKLY--QYERAKKSIWEEQINSRDAKTIAALIYGKLETL 769 (780)
T ss_dssp HTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEE--EEETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred hcCCceEEEEECCCC--HHHHHhcCCCcCCEEEEE--cCCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence 334788888888653 357889999999999998 34666666666 478999988888887643
No 295
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=73.78 E-value=14 Score=25.56 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=41.1
Q ss_pred HHHHHhh---cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 11 AVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 11 ~v~~~l~---~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
.+..+|+ .++-|...|++.++...++..|+ .+.|.+. + +|..+ . .|..+++++...|..++
T Consensus 32 ~~~~~L~~l~~~i~~~~vdi~~~~~~el~~~~g-~~vP~l~-~---~g~~~-~-~~g~~~~~l~~~l~~~~ 95 (100)
T 1wjk_A 32 EAKEVLQPYKDRFILQEVDITLPENSTWYERYK-FDIPVFH-L---NGQFL-M-MHRVNTSKLEKQLRKLS 95 (100)
T ss_dssp HHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSS-SSCSEEE-E---SSSEE-E-ESSCCHHHHHHHHHSSS
T ss_pred HHHHHHHHhhhCCeEEEEECCCcchHHHHHHHC-CCCCEEE-E---CCEEE-E-ecCCCHHHHHHHHHHHH
Confidence 5566666 35777788887555678889999 9999763 4 36654 2 34477887766665544
No 296
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=73.47 E-value=5.5 Score=32.61 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..+++.|++...|++++.+. +|. +.++.|..++++|...|.....++
T Consensus 189 ~~l~~~~gv~gtPt~vi~~~-~G~-~~~~~G~~~~~~L~~~l~~~~~~~ 235 (241)
T 1v58_A 189 EKLMDDLGANVTPAIYYMSK-ENT-LQQAVGLPDQKTLNIIMGNKLQHH 235 (241)
T ss_dssp HHHHHHHTCCSSCEEEEEET-TTE-EEEEESSCCHHHHHHHTTC-----
T ss_pred HHHHHHcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHHHHHHHHhh
Confidence 46778899999999998863 464 367899999999877777666554
No 297
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=72.23 E-value=5.8 Score=30.07 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=36.2
Q ss_pred hHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 30 SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 30 ~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
.+-..+++.|++...|+++|- +|. .+.|..+++.|...|.......
T Consensus 96 ~~~~~la~~~gI~gtPt~vi~---nG~---~i~G~~~~~~l~~~i~~~~~~~ 141 (147)
T 3gv1_A 96 AETTSLGEQFGFNGTPTLVFP---NGR---TQSGYSPMPQLEEIIRKNQQEG 141 (147)
T ss_dssp HHHHHHHHHTTCCSSCEEECT---TSC---EEESCCCTTHHHHHHHHTSCC-
T ss_pred HHHHHHHHHhCCCccCEEEEE---CCE---EeeCCCCHHHHHHHHHHHHHhc
Confidence 346788999999999999972 455 4789999999988888776654
No 298
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.92 E-value=16 Score=34.17 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 239 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~ 239 (248)
..+.+.|.|+|| .+.-.+..+.++++|++-|...+.-....-|.|...-+.... ...+.+++|.+.++.
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~-~WLd~~k~i~~q~~~ 71 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDL-TWIKLYKKVMQQDVK 71 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCE-EECCTTSBGGGSCBC
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcch-hHhhccccHHHhccc
Confidence 357899999999 577888999999999999988875334566888643233321 224678888887654
No 299
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=71.23 E-value=17 Score=27.30 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=42.2
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCC--CceEEEEeC-CCCceEEee-eCCCChHHHHHHHhhhhhc
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDP-ITGQKMRSW-CGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~--~P~l~ii~~-~~g~~l~~~-~G~~~~e~l~~~L~~~~~~ 80 (248)
..++|..+|....+..+++..|++.. +|.++|++. ..+.. ..+ .|.++++.+..-+..+++.
T Consensus 63 gki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~K-y~~~~~~~t~~~i~~Fv~d~l~G 128 (147)
T 3bj5_A 63 GKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTK-YKPESEELTAERITEFCHRFLEG 128 (147)
T ss_dssp TTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEE-ECCSCCCCCHHHHHHHHHHHHTT
T ss_pred CceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEeccccccc-CCCCcccCCHHHHHHHHHHHHcC
Confidence 46777777865445456888999875 999999985 33332 222 3678888776667777665
No 300
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=70.98 E-value=24 Score=27.65 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=40.3
Q ss_pred cceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce----------EEee---eC-CCChHHHHHHHhhhhh
Q 025774 18 TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK----------MRSW---CG-MVQPESLLEDLVPFMD 79 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~----------l~~~---~G-~~~~e~l~~~L~~~~~ 79 (248)
.+.+|..+|++ +...++..|++.++|+|.++-+-.+.. -..+ .| ..+++.|..-|..-+.
T Consensus 80 ~~v~f~kvD~d--~~~~la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~ 153 (178)
T 3ga4_A 80 SLNLFFTVDVN--EVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILN 153 (178)
T ss_dssp CCEEEEEEETT--TCHHHHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHT
T ss_pred CCEEEEEEECc--cCHHHHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcC
Confidence 56788888886 467899999999999999996532222 0112 24 5677776555555444
No 301
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=70.31 E-value=8.5 Score=32.66 Aligned_cols=68 Identities=16% Similarity=-0.019 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccC
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSG 237 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~g 237 (248)
....+.|.||||+...-.+..+.+.++|++-|...+.-.+..-|-|...-+... ....+.+++|.+.+
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~-~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATS-KTWLDSAKEIKKQV 83 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTE-EEECCTTSBHHHHC
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCc-cchhccchhHHHhc
Confidence 457899999999999999999999999999999987533455677753212211 11235667776653
No 302
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=70.17 E-value=11 Score=32.95 Aligned_cols=70 Identities=9% Similarity=-0.008 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCC---CCCcCeEEEc--cCCCCccccCCCcCCCccccCCcCce
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG---SEMKPFRLTH--AIPGATKSLDYDSKLTFEDSGLANAM 242 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~---~~~~~f~L~~--~~Pr~~~~l~~d~~~tl~d~gl~~~~ 242 (248)
...+.|+++ +...+-.|..+.+|.++...|...+++ .++..|-|.- .-|++. .-.+.++||+..|+.+..
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~--~Wl~~~~~l~~y~~~~~~ 77 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKG--IWLEAGKALDYYMLRNGD 77 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGC--EECCTTSBGGGGTCCTTC
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcC--EeccCCCCHHHhCCCCCc
Confidence 356888888 777889999999999999999887653 2588899976 335542 334678899999997543
No 303
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=69.76 E-value=21 Score=27.18 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=27.1
Q ss_pred EEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 47 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 47 l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
.+||++ +|.++.++.|..+++++...|...+..
T Consensus 139 ~~lid~-~G~i~~~~~g~~~~~~l~~~i~~lL~~ 171 (180)
T 3kij_A 139 KYLVNP-EGQVVKFWRPEEPIEVIRPDIAALVRQ 171 (180)
T ss_dssp EEEECT-TSCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred EEEECC-CCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 788885 699999999999998887777777654
No 304
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=68.97 E-value=19 Score=30.52 Aligned_cols=69 Identities=16% Similarity=-0.028 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 239 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~ 239 (248)
...+.+.|.|+|| .+.-.+..+.++++|++-|..++.-....-|-|... .... ....+.+++|.+.+..
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~-~~wL~~~~~i~~q~~~ 88 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDT-VAWLKMDKKVLDHDVS 88 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTE-EEECCTTSBGGGSSCC
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCc-CeeCCCccCHHHcCCC
Confidence 3467899999999 688899999999999999988874334566888654 3322 1224678888887654
No 305
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=68.84 E-value=23 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.529 Sum_probs=22.9
Q ss_pred HHHHhcCCCC------------CceEEEEeCCCCceEEeeeCC
Q 025774 34 KVCTYYKLDS------------IPVVLVVDPITGQKMRSWCGM 64 (248)
Q Consensus 34 ~~~~~~~~~~------------~P~l~ii~~~~g~~l~~~~G~ 64 (248)
.++..|++.. .|++.||++ +|.++..+.|.
T Consensus 103 ~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~~~ 144 (163)
T 3gkn_A 103 ALCRAFDVIKEKNMYGKQVLGIERSTFLLSP-EGQVVQAWRKV 144 (163)
T ss_dssp HHHHHTTCEEEEEETTEEEEEECCEEEEECT-TSCEEEEECSC
T ss_pred HHHHHhCCccccccccccccCcceEEEEECC-CCeEEEEEcCC
Confidence 4666777765 899999995 58988888554
No 306
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=68.83 E-value=23 Score=29.58 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=48.4
Q ss_pred eEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc
Q 025774 171 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 239 (248)
Q Consensus 171 ~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~ 239 (248)
+.|.|.|+|| .+.-.+..+.++++|++-|...+.-.+..-|.|...-+... ....+.+++|.+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~-~~wLd~~~~l~~q~~~ 68 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGF-STWLKLNKKVTAQDVR 68 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSC-EEECCSSSBGGGSCBC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCc-eeecccccCHHhhccC
Confidence 5789999999 57788899999999999998887533456788864323332 1123678888887654
No 307
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=67.94 E-value=8.5 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=26.4
Q ss_pred eEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 46 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 46 ~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
..+||++ +|.++.++.|..+++++...|...+
T Consensus 149 ~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 149 WKYLVAP-DGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp CEEEECT-TSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred eEEEEcC-CCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 8889985 6999999999999998877776543
No 308
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=65.91 E-value=7 Score=30.37 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=29.6
Q ss_pred HHHhcCCC------CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhhh
Q 025774 35 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 78 (248)
Q Consensus 35 ~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~~ 78 (248)
++..|++. ..|+.+||++ +|.++..+.|.. +.++++..|....
T Consensus 103 ~~~~ygv~~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~~l~~~l~~l~ 155 (186)
T 1n8j_A 103 LTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155 (186)
T ss_dssp HHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHhCCccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 44455554 3699999995 589888887754 4677777666553
No 309
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=65.78 E-value=3.4 Score=33.28 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=29.5
Q ss_pred HHHHhcCCC------CCceEEEEeCCCCceEEeeeCCCC----hHHHHHHHh
Q 025774 34 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMVQ----PESLLEDLV 75 (248)
Q Consensus 34 ~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~~----~e~l~~~L~ 75 (248)
.++..|++. .+|.++||++ +|.++..+.|..+ .++++..|.
T Consensus 144 ~~~~~ygv~~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~~il~~l~ 194 (222)
T 3ztl_A 144 EISKAYGVFDEEDGNAFRGLFIIDP-NGILRQITINDKPVGRSVDETLRLLD 194 (222)
T ss_dssp HHHHHTTCBCTTTSSBCEEEEEECT-TSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred HHHHHcCCeecCCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 466778887 8999999995 5998888877643 345544443
No 310
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=65.68 E-value=24 Score=30.27 Aligned_cols=72 Identities=10% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCHHHHHHhh---cceEEEEEecCChHHH-------------------HHHHhcCC----CCCceEEEEeCCCCceEEee
Q 025774 8 ANEAVSQTIS---TNFIFWQVYDDTSEGK-------------------KVCTYYKL----DSIPVVLVVDPITGQKMRSW 61 (248)
Q Consensus 8 ~~~~v~~~l~---~~fV~w~~d~~~~eg~-------------------~~~~~~~~----~~~P~l~ii~~~~g~~l~~~ 61 (248)
|..++.+|-+ +++.+.+.+.++.+.. .+++.|++ ..+|..+||++ +|.+...|
T Consensus 40 C~~e~~~~~~~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~-~G~i~~~~ 118 (322)
T 4eo3_A 40 STREAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDR-WGFVRKEW 118 (322)
T ss_dssp HHHHHHHHHHSCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHTTCEETTEECCEEEEECT-TSBEEEEE
T ss_pred CHHHHHHHHHHhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhcCCCCCCcCccEEEEECC-CCEEEEEE
Confidence 5566666654 3678888888776643 57777887 45789999996 58888888
Q ss_pred eCCCC---hHHHHHHHhhhhhc
Q 025774 62 CGMVQ---PESLLEDLVPFMDG 80 (248)
Q Consensus 62 ~G~~~---~e~l~~~L~~~~~~ 80 (248)
.+.-. +++++..|....+.
T Consensus 119 ~~v~~~~h~~~~l~~~~~~~~~ 140 (322)
T 4eo3_A 119 RRVKVEGHVQEVKEALDRLIEE 140 (322)
T ss_dssp ESCCSTTHHHHHHHHHHHHHHH
T ss_pred eCCCccccHHHHHHHHhhhchh
Confidence 87432 46777777777653
No 311
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=65.47 E-value=1.3 Score=35.63 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcCceEE
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 244 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~~v~ 244 (248)
.|-||.++|+.+.-....++||.+|-.-|... .+.++...+|+.. .+. | +++.||. ..++|.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~k-eGIP~~qQRLIf~--GK~--L--eD~~TLs----~~STLh 63 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQD-MGFEIDMMTLVNN--GFI--A--PNTELVT----DDVTYY 63 (189)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHH-hCcChhHEEEEec--CeE--C--CCCCccc----CCCEEE
Confidence 47788899998888899999999999999775 4667778888753 443 5 3467877 445553
No 312
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=65.41 E-value=6.5 Score=31.35 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=30.4
Q ss_pred CCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 41 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 41 ~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
+...|..+||++ +|.++.++.|..+++++...|...+
T Consensus 170 i~~~p~tflID~-~G~i~~~~~g~~~~~~l~~~I~~ll 206 (208)
T 2f8a_A 170 VAWNFEKFLVGP-DGVPLRRYSRRFQTIDIEPDIEALL 206 (208)
T ss_dssp CCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred cccCceEEEEcC-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 445699999994 6999999999999998877777665
No 313
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=64.78 E-value=16 Score=28.72 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
...+..+++...|+++|.. +|..+..+.|..+++.|...|...+..+
T Consensus 166 ~~~a~~~gv~g~Pt~~i~~--~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 166 FQRVAQWGISGFPALVVES--GTDRYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp HHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcccceEEEEE--CCEEEEeccCCCCHHHHHHHHHHHHHhc
Confidence 4567789999999998763 4776667889999999988888877653
No 314
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=64.75 E-value=5.6 Score=33.04 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=40.6
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCCh--H-HHHHHHhhhhhcC
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP--E-SLLEDLVPFMDGG 81 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~--e-~l~~~L~~~~~~~ 81 (248)
++.|..++++. ..++..|++..+|+++++. +|..+.++.|+.+. + -....|..+|..+
T Consensus 164 ~v~f~kVd~d~---~~l~~~~~I~~~PTll~~~--~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 164 MVKFCKIKASN---TGAGDRFSSDVLPTLLVYK--GGELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp TSEEEEEEHHH---HCCTTSSCTTTCSEEEEEE--TTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred CCEEEEEeCCc---HHHHHHCCCCCCCEEEEEE--CCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 46777777754 3477789999999998874 69999999987532 1 2334556666654
No 315
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=64.29 E-value=11 Score=34.47 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=40.4
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce------------EEeeeCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK------------MRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~------------l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.++|..+|++.. ..++..|++..||++.++.+..+.. +.-+...++.+++...+...+.
T Consensus 82 ~v~f~~VD~d~~--~~la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Lin 152 (470)
T 3qcp_A 82 IATAAAVNCASE--VDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVN 152 (470)
T ss_dssp GCEEEEEETTTC--HHHHHHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCC--HHHHHHcCCCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 488999998754 5789999999999999997543321 2223344677776665555543
No 316
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=63.01 E-value=4.3 Score=31.42 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=25.6
Q ss_pred CceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 44 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 44 ~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
+|...||++ +|.++.++.|..+++++...|..
T Consensus 152 ~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ 183 (185)
T 2gs3_A 152 NFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPH 183 (185)
T ss_dssp SCCEEEECT-TSCEEEEECTTSCGGGGGGGHHH
T ss_pred cceEEEECC-CCCEEEeeCCCCCHHHHHHHHHH
Confidence 589999995 69999999998888877665544
No 317
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=61.61 E-value=15 Score=28.06 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCCceEEEEeCCCCceEEeeeCCC--ChHHHHHHHhhhh
Q 025774 42 DSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFM 78 (248)
Q Consensus 42 ~~~P~l~ii~~~~g~~l~~~~G~~--~~e~l~~~L~~~~ 78 (248)
.+-|.+.||++ .|.++..+.|.. +.++++..|...+
T Consensus 132 ~H~~~~~liD~-~G~i~~~~~g~~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 132 IHGTSFYLIDQ-NGKVMKKYSGISNTPYEDIIRDMKRLA 169 (170)
T ss_dssp BCCCEEEEECT-TSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred EeeeEEEEEcC-CCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence 34578999996 599988898853 5678888776654
No 318
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=64.95 E-value=1.8 Score=32.41 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=23.1
Q ss_pred HHHhcC--CCCCceEEEEeCCCCceEEeeeCCCChHHH
Q 025774 35 VCTYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESL 70 (248)
Q Consensus 35 ~~~~~~--~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l 70 (248)
++..|+ +..+|.++||++ +|.++.+..| .+++++
T Consensus 104 ~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g-~~~~~l 139 (159)
T 2ls5_A 104 IFAKYALRDAGITRNVLIDR-EGKIVKLTRL-YNEEEF 139 (159)
Confidence 344555 455999999985 5888888777 344444
No 319
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=60.63 E-value=7.8 Score=29.24 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=28.5
Q ss_pred HHHHhcCCCC------CceEEEEeCCCCceEEeeeC-----CCChHHHHHHHhh
Q 025774 34 KVCTYYKLDS------IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVP 76 (248)
Q Consensus 34 ~~~~~~~~~~------~P~l~ii~~~~g~~l~~~~G-----~~~~e~l~~~L~~ 76 (248)
.++..|++.. .|...||++ .|.++.++.| ..+.++++..|..
T Consensus 113 ~~~~~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 113 SFGENYGVVMEELRLLARAVFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp HHHHHHTCEETTTTEECCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred HHHHHhCCccccCCceeeEEEEECC-CCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 5667777753 899999995 5888777443 2345677666643
No 320
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=60.05 E-value=7.6 Score=28.97 Aligned_cols=45 Identities=4% Similarity=0.071 Sum_probs=32.9
Q ss_pred HHHHhcCCCCCc------eEEEEeCCCCceEEeeeCCCC---hHHHHHHHhhhhhc
Q 025774 34 KVCTYYKLDSIP------VVLVVDPITGQKMRSWCGMVQ---PESLLEDLVPFMDG 80 (248)
Q Consensus 34 ~~~~~~~~~~~P------~l~ii~~~~g~~l~~~~G~~~---~e~l~~~L~~~~~~ 80 (248)
.++..|++...| ..+|| + +|.++.++.|... .+.++..|...++.
T Consensus 102 ~~~~~~gv~~~p~~g~~~~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~ 155 (159)
T 2a4v_A 102 EFIGLLGAKKTPLSGSIRSHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK 155 (159)
T ss_dssp HHHHHHTCBSSSSSCBCCEEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccCCccceEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHHHH
Confidence 567788888887 77777 4 6999998888653 35677777776654
No 321
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=58.77 E-value=25 Score=26.18 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=34.3
Q ss_pred CchHHHHHHHHhhcCCCCCcCeEEEc-cCCCCc---cccCCCcCCCccccCCcCceEE
Q 025774 191 DPIQLLWSYCYSQLEGSEMKPFRLTH-AIPGAT---KSLDYDSKLTFEDSGLANAMIS 244 (248)
Q Consensus 191 ~~l~~l~~fv~~~~~~~~~~~f~L~~-~~Pr~~---~~l~~d~~~tl~d~gl~~~~v~ 244 (248)
.||++|.+.+...+ || +..|.+.. + -.|- +.+.++.++||.++|+.+++++
T Consensus 20 ~TL~dLV~~l~~~~-gy-~~eiSV~~~~-~~rLLyD~DfDDnl~k~L~dLgv~~gsfL 74 (127)
T 3onh_A 20 MKLSDFVVLIREKY-SY-PQDISLLDAS-NQRLLFDYDFEDLNDRTLSEINLGNGSII 74 (127)
T ss_dssp CBHHHHHHHHHHHH-TC-CSSEEEEETT-TTEEEEETTBCTTTTSBTTTTTCCTTCEE
T ss_pred cCHHHHHHHHHHhc-CC-CCcEEEEecC-CCCeEeCCCccccccCcHHHcCcCCCcEE
Confidence 58999999987765 55 34888872 2 1111 1233456899999999976654
No 322
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=58.54 E-value=9.3 Score=34.58 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=42.3
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCce--EEeeeCCCChHHHHHHHhhhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~--l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
++++...|.+..+. .. |++..||++.++ + .|.. +..+.|..+.++|+..|...+.
T Consensus 411 ~v~~~~vd~~~~~~---~~-~~v~~~Pt~~~~-~-~G~~~~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 411 DVLIAKLDHTENDV---RG-VVIEGYPTIVLY-P-GGKKSESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp SCEEEEEEGGGCCC---SS-CCCSSSSEEEEE-C-CTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred cEEEEEecCCcccc---cc-CCceecCeEEEE-e-CCceecceEecCCCCHHHHHHHHHhcCC
Confidence 79999999876542 23 999999999988 3 4654 6778899999988777776543
No 323
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=58.37 E-value=36 Score=25.58 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=39.3
Q ss_pred hcceEEEEEecCChHHH-------------------HHHHhcCCC----------CCceEEEEeCCCCceEEeeeCC---
Q 025774 17 STNFIFWQVYDDTSEGK-------------------KVCTYYKLD----------SIPVVLVVDPITGQKMRSWCGM--- 64 (248)
Q Consensus 17 ~~~fV~w~~d~~~~eg~-------------------~~~~~~~~~----------~~P~l~ii~~~~g~~l~~~~G~--- 64 (248)
+.++.+++.+.++++.. .++..|++. .+|.++||++ +|.+..++.|.
T Consensus 65 ~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~ 143 (164)
T 4gqc_A 65 KANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPL 143 (164)
T ss_dssp GSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECT-TSBEEEEEECSCTT
T ss_pred ccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECC-CCEEEEEEEeCCCC
Confidence 34567777777665532 355566652 3677889985 58877765442
Q ss_pred --CChHHHHHHHhhhhh
Q 025774 65 --VQPESLLEDLVPFMD 79 (248)
Q Consensus 65 --~~~e~l~~~L~~~~~ 79 (248)
.+.++++..|.....
T Consensus 144 ~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 144 NEPDYDEVVREANKIAG 160 (164)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 357888887766543
No 324
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=57.33 E-value=20 Score=26.95 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 32 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 32 g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
....+..+++..+|+++| +|. .+.|..+.+.|...|...+.
T Consensus 133 ~~~~a~~~gv~gtPt~~i----~g~---~~~G~~~~~~l~~~i~~~l~ 173 (175)
T 3gyk_A 133 SMALAQKLGFNGTPSFVV----EDA---LVPGFVEQSQLQDAVDRARK 173 (175)
T ss_dssp HHHHHHHHTCCSSSEEEE----TTE---EECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccCCEEEE----CCE---EeeCCCCHHHHHHHHHHHHh
Confidence 346778899999999876 353 57799999998888777654
No 325
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=56.38 E-value=7.1 Score=27.32 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=28.5
Q ss_pred cceEEEEEecCChH---HHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCC
Q 025774 18 TNFIFWQVYDDTSE---GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 65 (248)
Q Consensus 18 ~~fV~w~~d~~~~e---g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~ 65 (248)
..|.+...+.+... ...++..|++..+|.+ ++ +|..+..+.|..
T Consensus 45 ~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~~---~g~~v~~~~~~~ 91 (116)
T 2e7p_A 45 ASYKVVELDELSDGSQLQSALAHWTGRGTVPNV-FI---GGKQIGGCDTVV 91 (116)
T ss_dssp CCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EE---TTEEEECHHHHH
T ss_pred CCeEEEEccCCCChHHHHHHHHHHhCCCCcCEE-EE---CCEEECChHHHH
Confidence 35666655554321 2457889999999999 44 477776655543
No 326
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=55.62 E-value=24 Score=28.72 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=31.2
Q ss_pred HHHHhcCCCC---------CceEEEEeCCCCceEEeeeC-----CCChHHHHHHHhhhhhc
Q 025774 34 KVCTYYKLDS---------IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPFMDG 80 (248)
Q Consensus 34 ~~~~~~~~~~---------~P~l~ii~~~~g~~l~~~~G-----~~~~e~l~~~L~~~~~~ 80 (248)
.++..|++.. .|..+||++ .|.+...+.+ ..+.++++..|......
T Consensus 118 ~vak~yGv~~~~~~~~G~~~p~tfvID~-dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~ 177 (224)
T 3keb_A 118 DFHKRYGVLITEYPLSGYTSPAIILADA-ANVVHYSERLANTRDFFDFDAIEKLLQEGEQQ 177 (224)
T ss_dssp THHHHTTCBCCSTTSTTCBCCEEEEECT-TCBEEEEEECSBTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccccccccCCccCEEEEEcC-CCEEEEEEecCCCCCCCCHHHHHHHHHHhhhc
Confidence 4666677643 699999995 4887665432 35678888888776543
No 327
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=55.26 E-value=24 Score=26.25 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=32.9
Q ss_pred HHHHHhcCCCC------CceEEEEeCCCCceEEeeeCC-----CChHHHHHHHhhhh
Q 025774 33 KKVCTYYKLDS------IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFM 78 (248)
Q Consensus 33 ~~~~~~~~~~~------~P~l~ii~~~~g~~l~~~~G~-----~~~e~l~~~L~~~~ 78 (248)
..++..|++.. +|++.||++ +|.++.+..|. .+.++++..|...+
T Consensus 111 ~~~~~~~~v~~~~~g~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 111 MSFGEAFGVYIKELRLLARSVFVLDE-NGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp CHHHHHTTCBBTTTCSBCCEEEEECT-TSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred hHHHHHhCCccccCCceeeEEEEEcC-CCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 45777888865 499999995 59988888763 24578887776553
No 328
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=55.26 E-value=12 Score=28.97 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
...+..+++...|+++| +|..+....|..+.+.|...|...+..
T Consensus 142 ~~~a~~~gv~gtPt~~v----ng~~~~~~~G~~~~e~l~~~i~~l~~k 185 (192)
T 3h93_A 142 KKLAMAYQVTGVPTMVV----NGKYRFDIGSAGGPEETLKLADYLIEK 185 (192)
T ss_dssp HHHHHHHTCCSSSEEEE----TTTEEEEHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEE----CCEEEecccccCCHHHHHHHHHHHHHH
Confidence 35677889999999876 477766666888899988887776653
No 329
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=54.48 E-value=21 Score=27.62 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 32 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 32 g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
....+..++++..|+++| +|..+-..+|..+.+.|...|...++
T Consensus 141 ~~~~a~~~gv~GtPtfvv----ng~~~v~~~Ga~~~e~~~~~i~~ll~ 184 (185)
T 3feu_A 141 AKMLSEKSGISSVPTFVV----NGKYNVLIGGHDDPKQIADTIRYLLE 184 (185)
T ss_dssp HHHHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCccCEEEE----CCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 345677899999999986 46655445898899999887776654
No 330
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=53.72 E-value=2.7 Score=34.39 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCCCCCCCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC
Q 025774 161 EEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 240 (248)
Q Consensus 161 ~eP~~~~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~ 240 (248)
|+|.+ ...+.|.| -.+|+.+.-+...+++++.|++..... .|.++..++|... .+. + +.+.|.+++|+..
T Consensus 14 ~~~~p--~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcER-qGLs~~siRFLFD--GqR--I--~dddTPadL~MED 83 (227)
T 3v7o_A 14 PEVKP--ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMED 83 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCC--CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHH-hCCCccceEEEEC--CEe--c--CCCCCHHHcCCCC
Confidence 44443 34677777 558999999999999999999876544 3545666666443 443 4 4588999999984
Q ss_pred -ceE
Q 025774 241 -AMI 243 (248)
Q Consensus 241 -~~v 243 (248)
++|
T Consensus 84 GDtI 87 (227)
T 3v7o_A 84 NDII 87 (227)
T ss_dssp ----
T ss_pred CCEE
Confidence 444
No 331
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=53.61 E-value=29 Score=27.15 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=36.4
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
..+..+++...|+++|-. +|..+....|..+++.|+..|...+..
T Consensus 160 ~~a~~~gv~g~Pt~~v~~--~~~~~~~~~g~~~~e~~~~~i~~~~~~ 204 (208)
T 3kzq_A 160 SLAKSLGVNSYPSLVLQI--NDAYFPIEVDYLSTEPTLKLIRERIIE 204 (208)
T ss_dssp HHHHHTTCCSSSEEEEEE--TTEEEEECCCSSCSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccEEEEEE--CCEEEEeeCCCCCHHHHHHHHHHHHhc
Confidence 556789999999998764 366666778999999999998888764
No 332
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=53.38 E-value=35 Score=24.30 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=34.0
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHH
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L 74 (248)
.+-+-..|++... .++..|++. .|.|.++ .+|+.+ ..|..+++++...|
T Consensus 58 ~i~~~~vDId~d~--~l~~~ygv~-VP~l~~~--~dG~~v--~~g~~~~~~L~~~L 106 (107)
T 2fgx_A 58 WFELEVINIDGNE--HLTRLYNDR-VPVLFAV--NEDKEL--CHYFLDSDVIGAYL 106 (107)
T ss_dssp CCCCEEEETTTCH--HHHHHSTTS-CSEEEET--TTTEEE--ECSSCCCHHHHHHH
T ss_pred CCeEEEEECCCCH--HHHHHhCCC-CceEEEE--ECCEEE--EecCCCHHHHHHHh
Confidence 5777778887433 256778986 9998765 347765 45888888876554
No 333
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=52.74 E-value=46 Score=24.68 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=34.4
Q ss_pred cceEEEEEecCChHHH-------------------HHHHhcCCC-----------CCceEEEEeCCCCceEEeeeCC---
Q 025774 18 TNFIFWQVYDDTSEGK-------------------KVCTYYKLD-----------SIPVVLVVDPITGQKMRSWCGM--- 64 (248)
Q Consensus 18 ~~fV~w~~d~~~~eg~-------------------~~~~~~~~~-----------~~P~l~ii~~~~g~~l~~~~G~--- 64 (248)
.++++++.+.++++.. .+++.|++. ..|.++||++ .|.+..++.|.
T Consensus 63 ~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~ 141 (157)
T 4g2e_A 63 VNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDK-EGKVRYKWVSDDPT 141 (157)
T ss_dssp CSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECT-TSBEEEEEEESSTT
T ss_pred cCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECC-CCEEEEEEECCCCC
Confidence 3677777777766532 345555542 3567788985 48877665442
Q ss_pred --CChHHHHHHHh
Q 025774 65 --VQPESLLEDLV 75 (248)
Q Consensus 65 --~~~e~l~~~L~ 75 (248)
.+.++++..|.
T Consensus 142 ~~~~~~eil~~l~ 154 (157)
T 4g2e_A 142 KEPPYDEIEKVVK 154 (157)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 34566655543
No 334
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=52.08 E-value=16 Score=29.32 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHHHhcCC-----CCCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhhh
Q 025774 34 KVCTYYKL-----DSIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 78 (248)
Q Consensus 34 ~~~~~~~~-----~~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~~ 78 (248)
.++..|++ ..+|.++||++ +|.++..+.|.. +.++++..|....
T Consensus 131 ~~~~~ygv~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 131 DISKNYNVLYDNSFALRGLFIIDK-NGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp HHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCcccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 45566777 36899999995 589888877743 4677777766554
No 335
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=51.87 E-value=31 Score=32.84 Aligned_cols=49 Identities=14% Similarity=-0.023 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcc
Q 025774 169 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA 217 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~ 217 (248)
..+.+.|.||||+...-.+..+.++++|++-|..++.-....-|.|...
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~ 310 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIA 310 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEe
Confidence 3467899999999999999999999999999999865334567888653
No 336
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=50.74 E-value=24 Score=28.00 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=29.5
Q ss_pred ceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 45 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 45 P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
|..+||++ .|.++.++.|.++++++...|...+..
T Consensus 160 ~ttflID~-~G~i~~~~~g~~~~~~l~~~I~~ll~~ 194 (207)
T 2r37_A 160 FEKFLVGP-DGIPIMRWHHRTTVSNVKMDILSYMRR 194 (207)
T ss_dssp TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 78899994 699999999999999988888777653
No 337
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=49.99 E-value=20 Score=28.72 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=29.5
Q ss_pred ceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 45 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 45 P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
|..+||++ +|.++.++.|.++++++...|...+..
T Consensus 178 pttfLID~-~G~vv~~~~g~~~~~~l~~~I~~ll~~ 212 (215)
T 2i3y_A 178 FEKFLVGP-DGIPVMRWSHRATVSSVKTDILAYLKQ 212 (215)
T ss_dssp TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHGGG
T ss_pred ceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 68899994 699999999999999988888777653
No 338
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=49.85 E-value=8.2 Score=31.60 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=28.4
Q ss_pred HHHHhcCCC------CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhh
Q 025774 34 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 76 (248)
Q Consensus 34 ~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~ 76 (248)
.++..|++. .+|..+||++ +|.++.++.|.. ..++++..|..
T Consensus 152 ~v~~~ygv~~~~~g~~~p~~flID~-~G~I~~~~~~~~~~~~~~~eil~~l~~ 203 (240)
T 3qpm_A 152 QISKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMNDLPVGRSVDETLRLVQA 203 (240)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HHHHHhCCccccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 456667775 6899999996 588877766643 34566655543
No 339
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=49.27 E-value=15 Score=19.35 Aligned_cols=17 Identities=47% Similarity=0.368 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHhhHhh
Q 025774 111 IENEELLQALAASMETI 127 (248)
Q Consensus 111 ~eeee~~~A~~~sl~~~ 127 (248)
+|+++++.|++-|+...
T Consensus 2 ~EeEEl~LAlAlS~sEa 18 (26)
T 2d3g_P 2 QEEEELQLALALSQSEA 18 (26)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45667778887777654
No 340
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=46.77 E-value=31 Score=26.29 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=29.3
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
...+..+++...|+++| +|.. +.|..+++.|...|...+..
T Consensus 139 ~~~a~~~gv~GtPt~vv----nG~~---~~G~~~~~~l~~~i~~~~~~ 179 (186)
T 3bci_A 139 KKIAKDNHIKTTPTAFI----NGEK---VEDPYDYESYEKLLKDKIKL 179 (186)
T ss_dssp HHHHHHTTCCSSSEEEE----TTEE---CSCTTCHHHHHHHHHC----
T ss_pred HHHHHHcCCCCCCeEEE----CCEE---cCCCCCHHHHHHHHHHHHHh
Confidence 35677899999999876 4653 56988999998887776654
No 341
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=46.55 E-value=9.4 Score=29.13 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=28.9
Q ss_pred HHHHhcCCCCC---------ceEEEEeCCCCceEEeeeC-CC----ChHHHHHHHhh
Q 025774 34 KVCTYYKLDSI---------PVVLVVDPITGQKMRSWCG-MV----QPESLLEDLVP 76 (248)
Q Consensus 34 ~~~~~~~~~~~---------P~l~ii~~~~g~~l~~~~G-~~----~~e~l~~~L~~ 76 (248)
.++..|++... |..+||++ +|.++..+.| .. ..++++..|.+
T Consensus 110 ~~~~~~gv~~~~~~~~g~~~p~~~lid~-~G~I~~~~~g~~~~~~~~~~~~l~~l~~ 165 (175)
T 1xvq_A 110 SFGEDYGVTIADGPMAGLLARAIVVIGA-DGNVAYTELVPEIAQEPNYEAALAALGA 165 (175)
T ss_dssp SHHHHTTCBBCSSTTTTSBCSEEEEECT-TSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred HHHHHhCCcccccccCCcccceEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHHHh
Confidence 47778888665 99999995 5998888764 22 34555555543
No 342
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=46.28 E-value=28 Score=27.52 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=30.9
Q ss_pred HHHHhcCCC------CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhhh
Q 025774 34 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 78 (248)
Q Consensus 34 ~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~~ 78 (248)
.++..|++. .+|..+||++ +|.++..+.|.. +.++++..|....
T Consensus 123 ~~~~~ygv~~~~~g~~~p~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 123 QISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCcccCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 455566663 5899999995 589888877653 4577777766554
No 343
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=45.38 E-value=22 Score=26.73 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.2
Q ss_pred CceEEEEeCCCCceEEeeeC-----CCChHHHHHHHhhh
Q 025774 44 IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPF 77 (248)
Q Consensus 44 ~P~l~ii~~~~g~~l~~~~G-----~~~~e~l~~~L~~~ 77 (248)
.|.+.||++ +|.++..+.| ..++++++..|...
T Consensus 133 ~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 133 ARAVFIIDK-EGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp CCEEEEECT-TSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred eeEEEEEcC-CCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 699999995 5888887764 34567888777653
No 344
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=44.66 E-value=38 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
...+..+++...|++ ||+ |..+ +.|..+.++|...|...+..
T Consensus 140 ~~~a~~~gv~gtPt~-vin---g~~~--~~g~~~~~~l~~~i~~~l~~ 181 (195)
T 2znm_A 140 QKLTEQYRIDSTPTV-IVG---GKYR--VIFNNGFDGGVHTIKELVAK 181 (195)
T ss_dssp HHHHHHTTCCSSSEE-EET---TTEE--ECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCeE-EEC---CEEE--EcCCCCHHHHHHHHHHHHHH
Confidence 456778999999995 453 5532 56777788888888877764
No 345
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=50.53 E-value=4.6 Score=29.16 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=21.6
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEe
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRS 60 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~ 60 (248)
..++..|++..+|+++||++ +|.++.+
T Consensus 98 ~~~~~~~~v~~~P~~~lid~-~G~i~~~ 124 (143)
T 2lus_A 98 SNVTAKYGITGIPALVIVKK-DGTLISM 124 (143)
Confidence 46788899999999999985 4776654
No 346
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=44.41 E-value=99 Score=23.26 Aligned_cols=57 Identities=18% Similarity=0.343 Sum_probs=35.3
Q ss_pred ceEEEEEecCChHHH-------------------HHHHhcCCC------------CCceEEEEeCCCCceEEeeeCCC--
Q 025774 19 NFIFWQVYDDTSEGK-------------------KVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGMV-- 65 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~-------------------~~~~~~~~~------------~~P~l~ii~~~~g~~l~~~~G~~-- 65 (248)
++.+++.+.++.+.. .++..|++. ..|..+||++ .|.++..+.|..
T Consensus 85 ~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~-~G~I~~~~~~~~~~ 163 (179)
T 3ixr_A 85 NATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGP-THRIVEAWRQVKVP 163 (179)
T ss_dssp TEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECT-TSBEEEEECSCCST
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECC-CCEEEEEEcCCCCC
Confidence 577777777654421 455566663 2588999996 588888876543
Q ss_pred -ChHHHHHHHhh
Q 025774 66 -QPESLLEDLVP 76 (248)
Q Consensus 66 -~~e~l~~~L~~ 76 (248)
..++++..|..
T Consensus 164 ~~~~~il~~l~~ 175 (179)
T 3ixr_A 164 GHAEEVLNKLKA 175 (179)
T ss_dssp THHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 23455555443
No 347
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=44.03 E-value=1.2e+02 Score=24.16 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCC
Q 025774 159 LPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 238 (248)
Q Consensus 159 l~~eP~~~~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl 238 (248)
+.++|.+ ...+.|.++- +|+.+.-+...++++..|++-.... .+.+...++|... .+. + +.+.|-++++.
T Consensus 12 ~~~~~~~--~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~-~g~~~~~~~f~fd--G~~--i--~~~~Tpk~L~~ 81 (209)
T 3uf8_A 12 VKPEVKP--ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDM 81 (209)
T ss_dssp ------C--CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-HTCCGGGCEEEET--TEE--C--CTTCCTTTTTC
T ss_pred ccceeCC--CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHh-hCCChheEEEEEC--CEe--c--cCCCChHHhhh
Confidence 3456654 4578888886 8888899999999999998755443 2566777777543 221 3 44667777776
Q ss_pred cC
Q 025774 239 AN 240 (248)
Q Consensus 239 ~~ 240 (248)
..
T Consensus 82 ed 83 (209)
T 3uf8_A 82 ED 83 (209)
T ss_dssp CT
T ss_pred cc
Confidence 63
No 348
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=43.72 E-value=23 Score=28.09 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 31 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 31 eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
+...++..|++..+|++++.+ |. .+.|..++++|...|....
T Consensus 169 ~~~~l~~~~gV~gtPt~v~~d---G~---~~~G~~~~~~l~~~l~~~~ 210 (216)
T 1eej_A 169 DHYALGVQLGVSGTPAVVLSN---GT---LVPGYQPPKEMKEFLDEHQ 210 (216)
T ss_dssp HHHHHHHHHTCCSSSEEECTT---SC---EEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCEEEEcC---Ce---EecCCCCHHHHHHHHHHhh
Confidence 446788899999999985433 53 4689999988877766554
No 349
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=43.62 E-value=39 Score=25.27 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhh
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 78 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~ 78 (248)
...++.++++..|+++| +|.-+-...|..+.++|+..+...+
T Consensus 140 ~~~a~~~gv~gTPtfiI----NGky~v~~~~~~s~e~~~~~i~~Ll 181 (184)
T 4dvc_A 140 DKQFQDSGLTGVPAVVV----NNRYLVQGQSAKSLDEYFDLVNYLL 181 (184)
T ss_dssp HHHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCCEEEE----CCEEeeCCcCCCCHHHHHHHHHHHH
Confidence 46678899999999875 4664434455667888877665443
No 350
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=43.55 E-value=38 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHH-HhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 34 KVC-TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 34 ~~~-~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..+ ..+++...|+++| +|.. +.|..+++.|...|.......
T Consensus 158 ~~a~~~~GV~GtPtfvv----ng~~---~~G~~~~e~l~~~i~~~~~~~ 199 (205)
T 3gmf_A 158 DEAINQYNVSGTPSFMI----DGIL---LAGTHDWASLRPQILARLNEG 199 (205)
T ss_dssp HHHHHHHCCCSSSEEEE----TTEE---CTTCCSHHHHHHHHHHHHTC-
T ss_pred HHHHHHcCCccCCEEEE----CCEE---EeCCCCHHHHHHHHHHHhhcc
Confidence 456 8899999999986 3553 689999999988888877664
No 351
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=43.01 E-value=66 Score=25.92 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=35.7
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 20 FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 20 fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
..|...|.+. -..++..|++..+|++.+. +| ..++.|..+.+++...+..+++
T Consensus 65 v~~~~vd~d~--~~~~~~~~gv~~~Pt~~i~---~g--~~~~~G~~~~~~l~~fv~~~l~ 117 (243)
T 2hls_A 65 LKLNVYYRES--DSDKFSEFKVERVPTVAFL---GG--EVRWTGIPAGEEIRALVEVIMR 117 (243)
T ss_dssp EEEEEEETTT--THHHHHHTTCCSSSEEEET---TT--TEEEESCCCTTHHHHHHHHHHH
T ss_pred eEEEEecCCc--CHHHHHhcCCCcCCEEEEE---CC--ceeEcCCCcHHHHHHHHHHHHh
Confidence 4454556543 3468999999999999987 25 5667787666666555554443
No 352
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=42.78 E-value=48 Score=30.52 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCC-CcCeEEEcc
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSE-MKPFRLTHA 217 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~-~~~f~L~~~ 217 (248)
...++|.|+||+...-.+..+.++++|++-|..++.-.+ ..-|.|...
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 478999999999999999999999999999988864222 346888653
No 353
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=41.62 E-value=89 Score=21.91 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcCc
Q 025774 170 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA 241 (248)
Q Consensus 170 ~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~ 241 (248)
-+.|.|+ -+|..+.-+-..+.+++.|++--... .|......++... ... + ..+.|-+++|+..+
T Consensus 21 ~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r-~gv~~~sirFlfD--G~r--I--~~~~TP~~L~meD~ 84 (95)
T 2l76_A 21 LFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATH-LGVSPSRILLLFG--ETE--L--SPTATPRTLKLGVA 84 (95)
T ss_dssp CEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHH-HTSCGGGEEEEET--TEE--C--CTTSCHHHHTCCSS
T ss_pred eEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhh-cCCChhhEEEEEC--CcC--C--CCCCCHhHcCCCCC
Confidence 4888898 58888999999999999999864333 3656666666542 332 4 56789999999843
No 354
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=41.25 E-value=34 Score=25.36 Aligned_cols=41 Identities=15% Similarity=-0.021 Sum_probs=28.1
Q ss_pred HHHHhcCCC----C--CceEEEEeCCCCceEEeeeCC-----CChHHHHHHHh
Q 025774 34 KVCTYYKLD----S--IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLV 75 (248)
Q Consensus 34 ~~~~~~~~~----~--~P~l~ii~~~~g~~l~~~~G~-----~~~e~l~~~L~ 75 (248)
.++..|++. . .|...||++ +|.++..+.|. .+.++++..|.
T Consensus 110 ~~~~~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l~ 161 (163)
T 1psq_A 110 SFGRDYALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAK 161 (163)
T ss_dssp HHHHHHTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred HHHHHhCCccccCCceEEEEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHHH
Confidence 466667664 2 399999995 58988888763 23377776664
No 355
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=40.54 E-value=48 Score=26.01 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
...+..+++...|+++| +|.. +.|..+++.|...|...+...
T Consensus 153 ~~~a~~~gV~gtPtfvv----nG~~---~~G~~~~e~l~~~i~~~~~~~ 194 (202)
T 3gha_A 153 SDLNQKMNIQATPTIYV----NDKV---IKNFADYDEIKETIEKELKGK 194 (202)
T ss_dssp HHHHHHTTCCSSCEEEE----TTEE---CSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcCCEEEE----CCEE---ecCCCCHHHHHHHHHHHHHhh
Confidence 45678899999999987 3654 678899999988888776653
No 356
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=40.53 E-value=21 Score=30.49 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCCceEEEeeCC--CCchHHHHHHHHhhcCCCCCcCeEEEccCCC
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLR--TDPIQLLWSYCYSQLEGSEMKPFRLTHAIPG 220 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~--~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr 220 (248)
.++..+|.|.|+||+.+.-.|.. +.|.++|.+-+ .+......-|-|...-|.
T Consensus 2 ~~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~l--gL~~~~~~~FaL~~~~~~ 55 (322)
T 4dxa_B 2 SPEFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGM--RLSQETQQYFTIWICSEN 55 (322)
T ss_dssp ---CCEEEEECTTSCEEEEECTTGGGCCHHHHHTTS--SCCTTGGGGEEEEEECSS
T ss_pred CCCceEEEEEEECCcEEEEEEcCCCCCcHHHHHHHh--CcCccccCeeEEEEECCc
Confidence 45688999999999999999999 99999995421 111112345888765443
No 357
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=40.51 E-value=92 Score=21.99 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=43.4
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCC
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPG 220 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr 220 (248)
.+..-|+|=+.||+...--...+.|.++|..-+.....-.....+.|+-.+|-
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~ 59 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPH 59 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETT
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 34467888889999999999999999999999887754445778889887775
No 358
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=39.57 E-value=50 Score=25.06 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
...+..+++...|+++ |+ |..+ +.|. ++++|...|...+..
T Consensus 145 ~~~a~~~gv~gtPt~v-in---g~~~--~~g~-~~~~l~~~i~~~~~~ 185 (193)
T 2rem_A 145 RAYALKVRPVGTPTIV-VN---GRYM--VTGH-DFEDTLRITDYLVSR 185 (193)
T ss_dssp HHHHHHHCCSSSSEEE-ET---TTEE--ECCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEE-EC---CEEE--ecCC-CHHHHHHHHHHHHHH
Confidence 3567789999999954 43 5543 4677 888888887777653
No 359
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=39.50 E-value=26 Score=26.19 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=20.3
Q ss_pred HHHHHhcCCC-----------CCceEEEEeCCCCceEEeeeCC
Q 025774 33 KKVCTYYKLD-----------SIPVVLVVDPITGQKMRSWCGM 64 (248)
Q Consensus 33 ~~~~~~~~~~-----------~~P~l~ii~~~~g~~l~~~~G~ 64 (248)
..+++.|++. ..|+.+||+ +|.+...+.|.
T Consensus 106 ~~~~~~~gv~~~~~~~g~~~~~~p~~~vid--~G~i~~~~~~~ 146 (162)
T 1tp9_A 106 ATYTHALGLELDLQEKGLGTRSRRFALLVD--DLKVKAANIEG 146 (162)
T ss_dssp SHHHHHTTCEEEETTTTSEEEECCEEEEEE--TTEEEEEEECS
T ss_pred chHHHHcCcccccccCCCCccceeEEEEEE--CCEEEEEEeeC
Confidence 3466667664 378888887 58877666654
No 360
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=39.14 E-value=6.3 Score=34.77 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCc-CceE
Q 025774 168 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI 243 (248)
Q Consensus 168 ~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~-~~~v 243 (248)
...+.|+|+- +|+.+..+...+++++.|++..... .+.+...+++... .+. + ..+.|.+++|+. ++.|
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r-~G~~~~~~rFlFd--G~r--I--~~~~TP~~L~MEDgD~I 87 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDII 87 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHH-hCCCcceEEEEEC--CeE--C--CCCCChHHcCCCccchh
Confidence 4467788875 7888999999999999999865443 3545666666543 333 4 467899999998 4444
No 361
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=38.93 E-value=83 Score=24.98 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHH
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLE 72 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~ 72 (248)
..++..|+++.||.++++.+ +|... .+.......+++.
T Consensus 195 ~~l~~~f~v~~~Pslvl~~~-~g~~~-~~~~~~~~r~~~~ 232 (244)
T 3q6o_A 195 ANVVRKFGVTDFPSCYLLFR-NGSVS-RVPVLMESRSFYT 232 (244)
T ss_dssp HHHHHHHTCCCSSEEEEEET-TSCEE-ECCCSSSSHHHHH
T ss_pred HHHHHHcCCCCCCeEEEEeC-CCCeE-eeccccccHHHHH
Confidence 57888899999999999985 45532 2333334444433
No 362
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=38.46 E-value=36 Score=26.92 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhh
Q 025774 32 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 76 (248)
Q Consensus 32 g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~ 76 (248)
-..++..|++...|++++. +|. .+.|..++++|...|..
T Consensus 170 ~~~l~~~~gV~gTPt~vi~---nG~---~~~G~~~~~~l~~~l~~ 208 (211)
T 1t3b_A 170 HYELGIQFGVRGTPSIVTS---TGE---LIGGYLKPADLLRALEE 208 (211)
T ss_dssp HHHHHHHHTCCSSCEEECT---TSC---CCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCEEEEe---CCE---EecCCCCHHHHHHHHHh
Confidence 4567889999999999873 365 47899899888666543
No 363
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=37.74 E-value=14 Score=30.57 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHhcCCC------CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHh
Q 025774 34 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV 75 (248)
Q Consensus 34 ~~~~~~~~~------~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~ 75 (248)
.++..|++. .+|.++||++ +|.+..++.|.. ..++++..|.
T Consensus 166 ~va~~ygv~~~~~g~~~p~tflID~-~G~I~~~~~~~~~~~~~~~eil~~L~ 216 (254)
T 3tjj_A 166 QISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQ 216 (254)
T ss_dssp HHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred HHHHHcCCccccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 455556663 5799999985 588877766533 3456655544
No 364
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=37.43 E-value=78 Score=25.21 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=24.4
Q ss_pred CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhh
Q 025774 43 SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPF 77 (248)
Q Consensus 43 ~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~ 77 (248)
..|.++||++ +|.+...+.|.. +.++++..|...
T Consensus 130 ~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eil~~i~~l 167 (224)
T 1prx_A 130 TARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVISL 167 (224)
T ss_dssp TCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred cceEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 4799999996 488887776643 467776666554
No 365
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=37.40 E-value=7 Score=34.54 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCceEEEEEcCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCccccCCcC-ceE
Q 025774 167 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 243 (248)
Q Consensus 167 ~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~-~~v 243 (248)
+++.+.|.|+- +|+.+.-+...++++..|++...... +.+...++|.. -.+. + ..+.|-+++|+.. ..|
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~-g~~~~~~~f~f--~G~~--i--~~~~Tp~~l~med~d~i 96 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ-GKEMDSLRFLY--DGIR--I--QADQAPEDLDMEDNDII 96 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHh-CCCcceEEEEE--CCEE--c--CCCCCHHHcCCCCCCEe
Confidence 34566777765 77888888899999999998765542 44455555543 3443 5 5678999999984 443
No 366
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=36.77 E-value=29 Score=29.46 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHH
Q 025774 32 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 32 g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L 74 (248)
-..++..|++..||++.+ +|+ .+.|..+.+++.+.+
T Consensus 240 ~~~la~~~gI~~vPT~~i----~G~---~~~G~~~~~~L~~~l 275 (291)
T 3kp9_A 240 QAQECTEAGITSYPTWII----NGR---TYTGVRSLEALAVAS 275 (291)
T ss_dssp CCHHHHTTTCCSTTEEEE----TTE---EEESCCCHHHHHHHT
T ss_pred HHHHHHHcCCcccCeEEE----CCE---EecCCCCHHHHHHHH
Confidence 457889999999999654 465 388999988875443
No 367
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=36.45 E-value=68 Score=25.75 Aligned_cols=47 Identities=6% Similarity=0.115 Sum_probs=34.0
Q ss_pred HHHHHh-cCCCCCceEEEEeCCCCceE-----EeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTY-YKLDSIPVVLVVDPITGQKM-----RSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~-~~~~~~P~l~ii~~~~g~~l-----~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
...+.. +++...|+++|.. .+|..+ ..+.|..+++.|...|...+..
T Consensus 160 ~~~a~~~~GV~GtPtfvv~~-~nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l~~ 212 (226)
T 3f4s_A 160 KSLAINKLGITAVPIFFIKL-NDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGK 212 (226)
T ss_dssp HHHHHHHHCCCSSCEEEEEE-CCTTCCCCGGGGEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCEEEEEc-CCCEEeeCCCCcccccccCHHHHHHHHHHHHhc
Confidence 356777 9999999999865 346543 2456666699998888877654
No 368
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=35.32 E-value=86 Score=23.81 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=30.6
Q ss_pred ceEEEEEecCChHHHHHHHhcC---CCCCceEEEEeCCCCceEEeeeC
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYK---LDSIPVVLVVDPITGQKMRSWCG 63 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~---~~~~P~l~ii~~~~g~~l~~~~G 63 (248)
++.|...+++ +...++..|. +.++|++++++. .|..+.++-|
T Consensus 85 ~v~~~~v~~d--~~~~~~~~~~~~~v~~iPt~i~~~~-~G~~~~~~g~ 129 (167)
T 1z6n_A 85 NIELAIISKG--RAEDDLRQRLALERIAIPLVLVLDE-EFNLLGRFVE 129 (167)
T ss_dssp TEEEEEECHH--HHHHHTTTTTTCSSCCSSEEEEECT-TCCEEEEEES
T ss_pred CcEEEEEECC--CCHHHHHHHHHcCCCCcCeEEEECC-CCCEEEEEcC
Confidence 5677777764 4455677776 999999999984 4677777743
No 369
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=34.05 E-value=52 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=23.8
Q ss_pred CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhh
Q 025774 43 SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPF 77 (248)
Q Consensus 43 ~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~ 77 (248)
.+|.++||++ +|.+...+.|.. +.++++..|...
T Consensus 126 ~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 126 TCRAVFIIGP-DKKLKLSILYPATTGRNFSEILRVIDSL 163 (233)
T ss_dssp ECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred ccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 5799999996 488877776543 467776666544
No 370
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=33.93 E-value=42 Score=26.01 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=29.9
Q ss_pred HHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHH
Q 025774 34 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 34 ~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L 74 (248)
+.++.++++..|+++| +|..+..++|..++++|.+.|
T Consensus 145 ~~a~~~GV~gtPtf~i----ng~~~~~~s~~~~~e~w~~~l 181 (182)
T 3gn3_A 145 KYARQNGIHVSPTFMI----NGLVQPGMSSGDPVSKWVSDI 181 (182)
T ss_dssp HHHHHHTCCSSSEEEE----TTEECTTCCTTSCHHHHHHHH
T ss_pred HHHHHCCCCccCEEEE----CCEEccCCCCCCCHHHHHHHh
Confidence 5678899999999986 477666688888999987765
No 371
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=33.18 E-value=1.1e+02 Score=20.61 Aligned_cols=72 Identities=8% Similarity=0.140 Sum_probs=51.5
Q ss_pred ceEEEEEc--CCCceEEEeeCCCCchHHHHHHHHhhcC-CCCCcC-eEEEccCCCCccccCCCcCCCccccCCcCceEEE
Q 025774 170 LCRVGVRL--PDGRRMQRNFLRTDPIQLLWSYCYSQLE-GSEMKP-FRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 245 (248)
Q Consensus 170 ~~~i~iRl--p~G~r~~r~F~~~~~l~~l~~fv~~~~~-~~~~~~-f~L~~~~Pr~~~~l~~d~~~tl~d~gl~~~~v~v 245 (248)
.+.|-|.| =+|+.+.=|.+..-++..|.+-|...+. +....+ |.+...-+.. .+ ..+.+|.|.|+.++.++.
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~--~L--~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDK--VF--SGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTE--EE--ETTSBTGGGTCCTTCEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCE--EE--cCCCEEeeCCcCCCCEEE
Confidence 45677777 3788999999999999999998877642 112333 7775432332 24 568999999999877664
No 372
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=32.48 E-value=51 Score=21.11 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=25.0
Q ss_pred HHHhhc---ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceE
Q 025774 13 SQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 58 (248)
Q Consensus 13 ~~~l~~---~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l 58 (248)
.+++++ .|.+...+.+ .+...++..|++.++|.+.+ +|..+
T Consensus 23 ~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~gv~~vPt~~i----~g~~~ 66 (80)
T 2k8s_A 23 ANAIDPSKYTVEIVHLGTD-KARIAEAEKAGVKSVPALVI----DGAAF 66 (80)
T ss_dssp HHHSCTTTEEEEEEETTTC-SSTHHHHHHHTCCEEEEEEE----TTEEE
T ss_pred HHHHHhcCCeEEEEEecCC-hhhHHHHHHcCCCcCCEEEE----CCEEE
Confidence 336654 2444444432 13456778899999999876 46644
No 373
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=31.18 E-value=1.2e+02 Score=25.80 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=54.9
Q ss_pred ccCCCH------HHHHHhhc-ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCC-------CC-ceEEeeeCCCChHH
Q 025774 5 DTWANE------AVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI-------TG-QKMRSWCGMVQPES 69 (248)
Q Consensus 5 ~vl~~~------~v~~~l~~-~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~-------~g-~~l~~~~G~~~~e~ 69 (248)
|++|+. .+.++-.+ ..++.-++-+|+...++.....-.+-|...|=+.. .| ..++...|..+|+.
T Consensus 190 ~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGITAGASTP~~ 269 (297)
T 3dnf_A 190 NTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGISAGASTPDW 269 (297)
T ss_dssp CCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEEECTTCCHH
T ss_pred CCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHH
Confidence 566664 67777775 67777888888998887776554445665552211 12 25888999999999
Q ss_pred HHHHHhhhhhcC
Q 025774 70 LLEDLVPFMDGG 81 (248)
Q Consensus 70 l~~~L~~~~~~~ 81 (248)
++..+...|...
T Consensus 270 li~eVi~~l~~~ 281 (297)
T 3dnf_A 270 IIEQVKSRIQEI 281 (297)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999998888765
No 374
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=30.88 E-value=1.4e+02 Score=20.92 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCceEEEeeCC--CCchHHHHHHHHhhcCCCCCcCeEE
Q 025774 169 LLCRVGVRLPDGRRMQRNFLR--TDPIQLLWSYCYSQLEGSEMKPFRL 214 (248)
Q Consensus 169 ~~~~i~iRlp~G~r~~r~F~~--~~~l~~l~~fv~~~~~~~~~~~f~L 214 (248)
...-|+|+.|||.-+.-.-.+ .-..++|.+-+...+++.....|.-
T Consensus 13 ~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~TAFeY 60 (106)
T 2npt_A 13 QVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEY 60 (106)
T ss_dssp CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCCSEEEE
T ss_pred CceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccceeeeeee
Confidence 457799999999988888884 5567999999988877655555543
No 375
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=30.34 E-value=67 Score=23.93 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHH
Q 025774 32 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 32 g~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L 74 (248)
....+..+++...|+++ |+ |. .+.|..+.+.|...|
T Consensus 138 ~~~~a~~~gv~gtPt~v-vn---g~---~~~G~~~~~~l~~~i 173 (175)
T 1z6m_A 138 VIAEANAAHIQFVPTII-IG---EY---IFDESVTEEELRGYI 173 (175)
T ss_dssp HHHHHHHHTCCSSCEEE-ET---TE---EECTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCcCeEE-EC---CE---EccCCCCHHHHHHHh
Confidence 34678889999999965 43 55 357988888886655
No 376
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=30.28 E-value=72 Score=20.21 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=21.5
Q ss_pred EEEEEcCCCceEEEeeCCCCchHHHHHHH
Q 025774 172 RVGVRLPDGRRMQRNFLRTDPIQLLWSYC 200 (248)
Q Consensus 172 ~i~iRlp~G~r~~r~F~~~~~l~~l~~fv 200 (248)
.|.|.+|||+. +.|....|+.+|..-+
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSL 28 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHH
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHH
Confidence 37889999974 7888888888887655
No 377
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=36.40 E-value=11 Score=26.79 Aligned_cols=36 Identities=8% Similarity=0.280 Sum_probs=29.0
Q ss_pred CCCCCceEEEEEcCCCceEEEeeCCCCchHHHHHHH
Q 025774 165 VDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYC 200 (248)
Q Consensus 165 ~~~~~~~~i~iRlp~G~r~~r~F~~~~~l~~l~~fv 200 (248)
++....+.+++|++|-++...+|.-+..|+-.|+--
T Consensus 20 ~~~~~~i~L~LRi~Dpkk~~gk~KeNeaIeF~Fdle 55 (98)
T 2lru_A 20 DGEKIAIKLWLRIEDIKKLKGKYKDNEAIEFSFDLE 55 (98)
Confidence 344557889999999998888999999998888753
No 378
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=30.06 E-value=32 Score=23.49 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.3
Q ss_pred CcchHHHHHHHHHHhhHhhhc
Q 025774 109 PDIENEELLQALAASMETIKD 129 (248)
Q Consensus 109 ~~~eeee~~~A~~~sl~~~~~ 129 (248)
+..+|+++++||+.||+.-+.
T Consensus 8 ~~~eDeDLkrAieLSL~Es~~ 28 (81)
T 1q0v_A 8 PEDEEELIRKAIELSLKESRN 28 (81)
T ss_dssp CSSHHHHHHHHHHHHHHCCCC
T ss_pred ccCchHHHHHHHHHhHHHHcC
Confidence 356889999999999997644
No 379
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=29.81 E-value=1.3e+02 Score=27.12 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=38.9
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhh
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 77 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~ 77 (248)
++-+...|++ +-..++..|++.+.|.+++ +|+.+.. |..+.+++...|...
T Consensus 148 ~v~~~~vd~~--~~~~~~~~~~i~svPt~~i----~g~~~~~--G~~~~~~l~~~l~~~ 198 (521)
T 1hyu_A 148 RIKHTAIDGG--TFQNEITERNVMGVPAVFV----NGKEFGQ--GRMTLTEIVAKVDTG 198 (521)
T ss_dssp TEEEEEEETT--TCHHHHHHTTCCSSSEEEE----TTEEEEE--SCCCHHHHHHHHCCS
T ss_pred ceEEEEEech--hhHHHHHHhCCCccCEEEE----CCEEEec--CCCCHHHHHHHHhhc
Confidence 5677777765 4456889999999999976 5776644 988989888876654
No 380
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=29.41 E-value=1e+02 Score=23.70 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhc
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 80 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~ 80 (248)
...+..+++...|+++| +|..+. .|. +.+.|...|...++.
T Consensus 144 ~~~a~~~gv~gtPt~vv----ng~~~~--~~~-~~e~l~~~i~~ll~k 184 (193)
T 3hz8_A 144 QELTETFQIDGVPTVIV----GGKYKV--EFA-DWESGMNTIDLLADK 184 (193)
T ss_dssp HHHHHHTTCCSSSEEEE----TTTEEE--CCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCCEEEE----CCEEEe--cCC-CHHHHHHHHHHHHHH
Confidence 45678899999999986 366432 244 888888877777653
No 381
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=29.22 E-value=30 Score=26.37 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=28.1
Q ss_pred HHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 35 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 35 ~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
.+..+++...|+++| +|..+....|..+++.|...|...+.
T Consensus 154 ~a~~~gv~gtPt~~i----ng~~~~~~~g~~~~~~l~~~i~~~l~ 194 (195)
T 3c7m_A 154 SYDVAKIQGVPAYVV----NGKYLIYTKSIKSIDAMADLIRELAS 194 (195)
T ss_dssp HHHHHHHHCSSEEEE----TTTEEECGGGCCCHHHHHHHHHHHHT
T ss_pred HHHHcCCCccCEEEE----CCEEEeccCCCCCHHHHHHHHHHHHh
Confidence 456678899999654 36543223487889998887776653
No 382
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=28.66 E-value=66 Score=25.59 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=23.5
Q ss_pred CCceEEEEeCCCCceEEeeeCCC----ChHHHHHHHhhh
Q 025774 43 SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPF 77 (248)
Q Consensus 43 ~~P~l~ii~~~~g~~l~~~~G~~----~~e~l~~~L~~~ 77 (248)
..|.++||++ +|.+...+.|.. +.++++..|...
T Consensus 127 ~~p~~flID~-~G~I~~~~~~~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 127 TCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSL 164 (220)
T ss_dssp ECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred ccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 4799999996 488777765533 567776666544
No 383
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=27.90 E-value=1.4e+02 Score=23.95 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=33.5
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
...+..+++..+|+++| +|. ..+.|..+++.|...|...+...
T Consensus 173 ~~~a~~~Gv~GvPtfvv----~g~--~~v~Ga~~~e~~~~~i~~~~~~~ 215 (239)
T 3gl5_A 173 EREAAQLGATGVPFFVL----DRA--YGVSGAQPAEVFTQALTQAWGER 215 (239)
T ss_dssp HHHHHHTTCCSSSEEEE----TTT--EEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCeeCeEEE----CCc--EeecCCCCHHHHHHHHHHHHhhc
Confidence 34567889999999975 344 23689999999999999888753
No 384
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=27.82 E-value=1.5e+02 Score=20.47 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=36.6
Q ss_pred CCCceEEEEEcCC---Cc--eEEEeeCCCCchHHHHHHHHhh-cCCCCCcCeEEEccCC-CCccccC
Q 025774 167 RSLLCRVGVRLPD---GR--RMQRNFLRTDPIQLLWSYCYSQ-LEGSEMKPFRLTHAIP-GATKSLD 226 (248)
Q Consensus 167 ~~~~~~i~iRlp~---G~--r~~r~F~~~~~l~~l~~fv~~~-~~~~~~~~f~L~~~~P-r~~~~l~ 226 (248)
.++.+-|+|++-+ |. +-..-.+.+.+=+.|..-+..+ +++..+..|+|++-.| .+...++
T Consensus 2 ~~d~~iIRVs~e~~~~Gn~YKSIlltsqDktp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~~kEL~iP 68 (90)
T 1rlf_A 2 SSDCRIIRVQMELGEDGSVYKSILVTSQDKAPSVISRVLKKNNRDSAVASEFELVQLLPGDRELTIP 68 (90)
T ss_dssp CSCEEEEEEEECCSSSCCSCCEEEEETTCCCTTHHHHHHHHTTTTSCCCCCEEEEETTTTCEECCTT
T ss_pred CCceEEEEEEEEeCCCCceEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCCCCEEecC
Confidence 3456667777753 53 3344455555556666666665 3444688999999988 4444444
No 385
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=26.84 E-value=50 Score=25.73 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=24.8
Q ss_pred HHHHhcCCC---------CCceEEEEeCCCCceEEeeeCC-----CChHHHHHHH
Q 025774 34 KVCTYYKLD---------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDL 74 (248)
Q Consensus 34 ~~~~~~~~~---------~~P~l~ii~~~~g~~l~~~~G~-----~~~e~l~~~L 74 (248)
.++..|++. ..|..+||++ +|.++.+..|. .+.++++..|
T Consensus 146 ~~~~~ygv~~~~~~~~g~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L 199 (200)
T 3zrd_A 146 DFKQAYGVAITEGPLAGLTARAVVVLDG-QDNVIYSELVNEITTEPNYDAALAAL 199 (200)
T ss_dssp HHHHHTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred HHHHHhCceeecccCCCccccEEEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence 455566653 3699999985 58887775542 2445555544
No 386
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=26.36 E-value=27 Score=22.14 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=12.0
Q ss_pred ccCCCHHHHHHhhc
Q 025774 5 DTWANEAVSQTIST 18 (248)
Q Consensus 5 ~vl~~~~v~~~l~~ 18 (248)
.+|+|++|++|++.
T Consensus 27 SLLRsPEVI~Fl~~ 40 (62)
T 2kw3_C 27 SLLRSPEVVQFLQK 40 (62)
T ss_dssp HTTCCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHH
Confidence 47899999999975
No 387
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=25.20 E-value=57 Score=22.99 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=36.7
Q ss_pred EEEeeCCCCchHHHHHHHHhhcCCCCCc-----------CeEEEccCCCCc--cccCCCcCCCccccCCc-CceEEE
Q 025774 183 MQRNFLRTDPIQLLWSYCYSQLEGSEMK-----------PFRLTHAIPGAT--KSLDYDSKLTFEDSGLA-NAMISV 245 (248)
Q Consensus 183 ~~r~F~~~~~l~~l~~fv~~~~~~~~~~-----------~f~L~~~~Pr~~--~~l~~d~~~tl~d~gl~-~~~v~v 245 (248)
+.-.|..+.||+++.+.+... ..+-.. .=.|+-..|+.- .+- .+.+++|.|+|+. +..|.|
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~-p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr-~NL~k~l~eLgl~~g~ei~V 81 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNS-ASLQMKSPAITATLEGKNRTLYMQSVTSIEERTR-PNLSKTLKELGLVDGQELAV 81 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHC-TTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHH-HHHHSBSGGGTCCTTCEEEE
T ss_pred EEEEECCchhHHHHHHHHHhC-hHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhH-hhhhCCHHHhCCCCCCEEEE
Confidence 345788999999999998763 122111 233443334321 011 2568999999998 455555
No 388
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=24.83 E-value=80 Score=27.46 Aligned_cols=65 Identities=2% Similarity=-0.166 Sum_probs=44.1
Q ss_pred EEEEEcCCCc----eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEccCCCCccccCCCcCCCcccc
Q 025774 172 RVGVRLPDGR----RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDS 236 (248)
Q Consensus 172 ~i~iRlp~G~----r~~r~F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~~Pr~~~~l~~d~~~tl~d~ 236 (248)
.+.|.||||. ...-.|..+.++++|.+-|...+.-....-|-|...-+........+.+++|.+.
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 3568999997 8999999999999999999888643334568886532211011112556666554
No 389
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.61 E-value=1.4e+02 Score=20.64 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=39.6
Q ss_pred ceEEEEEecCChHHHHHHHhcCCC----CCceEEEEeCCCCc---------eEEeeeCCCChHHHHHHHhhhhhcC
Q 025774 19 NFIFWQVYDDTSEGKKVCTYYKLD----SIPVVLVVDPITGQ---------KMRSWCGMVQPESLLEDLVPFMDGG 81 (248)
Q Consensus 19 ~fV~w~~d~~~~eg~~~~~~~~~~----~~P~l~ii~~~~g~---------~l~~~~G~~~~e~l~~~L~~~~~~~ 81 (248)
..|+.-++.....|..++..++.. ..|.|++....+.. ....+...+++++|...|..++..+
T Consensus 64 dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 64 AVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp SEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 356665555566788888777653 45666655432211 1233455678899999888887764
No 390
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.38 E-value=1.8e+02 Score=19.87 Aligned_cols=71 Identities=11% Similarity=0.187 Sum_probs=43.0
Q ss_pred HHHHHhhc---ceEEEEEecCChHHHHHHHhcCC----CCCceEEEEeCCCCc---------eEEeeeCCCChHHHHHHH
Q 025774 11 AVSQTIST---NFIFWQVYDDTSEGKKVCTYYKL----DSIPVVLVVDPITGQ---------KMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 11 ~v~~~l~~---~fV~w~~d~~~~eg~~~~~~~~~----~~~P~l~ii~~~~g~---------~l~~~~G~~~~e~l~~~L 74 (248)
+..+.+.. ..|+..++.....|..++..++. ...|.|++....+.. ....+...+++++|...|
T Consensus 45 ~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i 124 (143)
T 3cnb_A 45 DAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTI 124 (143)
T ss_dssp HHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Confidence 44455543 45666555555678887776654 335555554432211 123455578899999999
Q ss_pred hhhhhcC
Q 025774 75 VPFMDGG 81 (248)
Q Consensus 75 ~~~~~~~ 81 (248)
..++..+
T Consensus 125 ~~~~~~~ 131 (143)
T 3cnb_A 125 KQLVEQK 131 (143)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9998865
No 391
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=21.88 E-value=1.2e+02 Score=21.16 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=42.1
Q ss_pred HHHHHhhc---ceEEEEEecCChHHHHHHHhcCC----CCCceEEEEeCCCCc---------eEEeeeCCC-ChHHHHHH
Q 025774 11 AVSQTIST---NFIFWQVYDDTSEGKKVCTYYKL----DSIPVVLVVDPITGQ---------KMRSWCGMV-QPESLLED 73 (248)
Q Consensus 11 ~v~~~l~~---~fV~w~~d~~~~eg~~~~~~~~~----~~~P~l~ii~~~~g~---------~l~~~~G~~-~~e~l~~~ 73 (248)
+..+.+.. ..|+.-+......|..++..++. ...|.|++....+.. ....+.... ++++|...
T Consensus 42 ~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~ 121 (144)
T 3kht_A 42 KALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGR 121 (144)
T ss_dssp HHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHH
T ss_pred HHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHH
Confidence 34444443 34555554455568877776654 346666655432211 123455567 89999999
Q ss_pred HhhhhhcC
Q 025774 74 LVPFMDGG 81 (248)
Q Consensus 74 L~~~~~~~ 81 (248)
|..++.++
T Consensus 122 i~~~l~~~ 129 (144)
T 3kht_A 122 IYAIFSYW 129 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888875
No 392
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=21.48 E-value=3.1e+02 Score=21.84 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=39.9
Q ss_pred HHhhcceEEEEEecCChHHH--------------------------HHHHhcCC------CCCceEEEEeCCCCceEEee
Q 025774 14 QTISTNFIFWQVYDDTSEGK--------------------------KVCTYYKL------DSIPVVLVVDPITGQKMRSW 61 (248)
Q Consensus 14 ~~l~~~fV~w~~d~~~~eg~--------------------------~~~~~~~~------~~~P~l~ii~~~~g~~l~~~ 61 (248)
+|-+.++.+++++.++.... .++..|++ -.++.++||+|. |.+...+
T Consensus 81 ~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~-G~Ir~~~ 159 (216)
T 3sbc_A 81 KFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPK-GVIRHIT 159 (216)
T ss_dssp HHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTT-SBEEEEE
T ss_pred hhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCC-CeEEEEE
Confidence 34445899999999876532 46777776 246889999975 7653332
Q ss_pred -eC-C--CChHHHHHHHhhh
Q 025774 62 -CG-M--VQPESLLEDLVPF 77 (248)
Q Consensus 62 -~G-~--~~~e~l~~~L~~~ 77 (248)
.- . -..++++..|..+
T Consensus 160 v~~~~~grn~dEiLr~l~Al 179 (216)
T 3sbc_A 160 INDLPVGRNVDEALRLVEAF 179 (216)
T ss_dssp EECTTBCCCHHHHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHHHHh
Confidence 21 1 2567777765543
No 393
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=21.42 E-value=1e+02 Score=23.33 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCCh-HHHHHHHhhhhh
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP-ESLLEDLVPFMD 79 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~-e~l~~~L~~~~~ 79 (248)
.+.+..+++...|+++| +|..+..-.+..+. +.|+..|...+.
T Consensus 141 ~~~a~~~gv~gtPt~vi----ng~~~~~g~~~~~~~e~~~~~i~~L~~ 184 (195)
T 3hd5_A 141 SQLAEAAHIDGTPAFAV----GGRYMTSPVLAGNDYAGALKVVDQLIV 184 (195)
T ss_dssp HHHHHHTTCCSSSEEEE----TTTEEECTTTTTGGGTTHHHHHHHHHH
T ss_pred HHHHHHhCCCcCceEEE----CCEEEeCccccCChHHHHHHHHHHHHH
Confidence 45677899999999986 46544222222344 666665555444
No 394
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.07 E-value=2.1e+02 Score=19.63 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=42.2
Q ss_pred HHHHHhhc---ceEEEEEecCChHHHHHHHhcCC----CCCceEEEEeCCCCc---------eEEeeeCCCChHHHHHHH
Q 025774 11 AVSQTIST---NFIFWQVYDDTSEGKKVCTYYKL----DSIPVVLVVDPITGQ---------KMRSWCGMVQPESLLEDL 74 (248)
Q Consensus 11 ~v~~~l~~---~fV~w~~d~~~~eg~~~~~~~~~----~~~P~l~ii~~~~g~---------~l~~~~G~~~~e~l~~~L 74 (248)
+..+.+.+ ..|+.-++.....|..++..++. ...|.|++....+.. ....+...+++++|...|
T Consensus 42 ~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 121 (142)
T 3cg4_A 42 QCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKT 121 (142)
T ss_dssp HHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHH
Confidence 44555554 35555555555677777766543 345655555432211 123455578899999999
Q ss_pred hhhhhcC
Q 025774 75 VPFMDGG 81 (248)
Q Consensus 75 ~~~~~~~ 81 (248)
..++..+
T Consensus 122 ~~~~~~~ 128 (142)
T 3cg4_A 122 TFFMGFV 128 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888753
No 395
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=20.72 E-value=1.1e+02 Score=24.25 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCceEEEEeCCCCceEEeeeCC---------CChHHHHHHHhh
Q 025774 43 SIPVVLVVDPITGQKMRSWCGM---------VQPESLLEDLVP 76 (248)
Q Consensus 43 ~~P~l~ii~~~~g~~l~~~~G~---------~~~e~l~~~L~~ 76 (248)
..|+.+|| + +|.+...+.|. .++++++..|..
T Consensus 124 ~~p~t~li-~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~ 164 (241)
T 1nm3_A 124 SWRYSMLV-K-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP 164 (241)
T ss_dssp ECCEEEEE-E-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred ceeEEEEE-E-CCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence 35888888 4 68888887774 346677666654
No 396
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=20.06 E-value=1.5e+02 Score=22.64 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCCceEEEEeCCCCceEEeeeCCCChHHHHHHHhhhhh
Q 025774 33 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 79 (248)
Q Consensus 33 ~~~~~~~~~~~~P~l~ii~~~~g~~l~~~~G~~~~e~l~~~L~~~~~ 79 (248)
...+..+++...|+++| +|+ .+.|..+.+.|...|.....
T Consensus 157 ~~~a~~~Gv~G~Ptfvi----~g~---~~~G~~~~~~l~~~l~~~~~ 196 (203)
T 2imf_A 157 THAAIERKVFGVPTMFL----GDE---MWWGNDRLFMLESAMGRLCR 196 (203)
T ss_dssp HHHHHHTTCCSSSEEEE----TTE---EEESGGGHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCcCCEEEE----CCE---EEECCCCHHHHHHHHhcccc
Confidence 34567889999999876 354 47898888888877776654
No 397
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=20.03 E-value=73 Score=23.54 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=20.2
Q ss_pred HHHHHhcCCCC---------CceEEEEeCCCCceEEeeeC
Q 025774 33 KKVCTYYKLDS---------IPVVLVVDPITGQKMRSWCG 63 (248)
Q Consensus 33 ~~~~~~~~~~~---------~P~l~ii~~~~g~~l~~~~G 63 (248)
..++..|++.. .|...||++ +|.++..+.|
T Consensus 110 ~~~~~~~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~ 148 (165)
T 1q98_A 110 HALHSQLGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV 148 (165)
T ss_dssp THHHHHTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred chHHHHhCceecccccCCccceeEEEEcC-CCEEEEEEeC
Confidence 34556666632 488888885 5888777765
Done!