Query 025775
Match_columns 248
No_of_seqs 214 out of 2057
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:23:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03291 Pox_MCEL: mRNA cappin 100.0 7.9E-47 1.7E-51 323.2 21.8 230 6-247 30-275 (331)
2 KOG1975 mRNA cap methyltransfe 100.0 9.3E-47 2E-51 310.0 18.5 226 6-247 91-325 (389)
3 PF01209 Ubie_methyltran: ubiE 99.9 2.7E-23 5.9E-28 170.7 12.1 175 23-240 38-221 (233)
4 COG2226 UbiE Methylase involve 99.9 6.2E-23 1.4E-27 167.2 12.5 176 21-239 40-224 (238)
5 PLN02396 hexaprenyldihydroxybe 99.8 7.4E-20 1.6E-24 156.6 14.8 161 31-241 131-291 (322)
6 KOG1540 Ubiquinone biosynthesi 99.8 4.1E-19 8.9E-24 142.9 13.9 170 21-236 89-278 (296)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.5E-20 5.5E-25 149.7 6.2 179 10-240 34-216 (243)
8 PF12847 Methyltransf_18: Meth 99.8 5.3E-19 1.2E-23 129.1 11.1 108 31-146 1-111 (112)
9 PLN02233 ubiquinone biosynthes 99.8 1.9E-18 4E-23 144.8 14.8 110 29-148 71-184 (261)
10 PRK11036 putative S-adenosyl-L 99.8 1.3E-18 2.8E-23 145.4 13.4 118 24-151 37-154 (255)
11 COG2230 Cfa Cyclopropane fatty 99.8 6.5E-18 1.4E-22 140.3 15.0 160 29-245 70-229 (283)
12 PTZ00098 phosphoethanolamine N 99.8 1.2E-17 2.6E-22 140.1 16.8 108 29-147 50-157 (263)
13 PLN02244 tocopherol O-methyltr 99.8 2.5E-17 5.5E-22 143.0 19.1 108 30-147 117-224 (340)
14 PF08241 Methyltransf_11: Meth 99.8 4.3E-18 9.4E-23 120.1 9.4 95 36-144 1-95 (95)
15 PF13489 Methyltransf_23: Meth 99.7 3.2E-17 7E-22 127.0 11.9 100 29-150 20-119 (161)
16 PRK15451 tRNA cmo(5)U34 methyl 99.7 4.8E-17 1E-21 135.3 13.6 112 24-145 49-163 (247)
17 TIGR02752 MenG_heptapren 2-hep 99.7 1.1E-17 2.3E-22 137.9 9.6 118 18-147 32-152 (231)
18 KOG1270 Methyltransferases [Co 99.7 9.1E-18 2E-22 136.0 8.6 169 18-239 68-249 (282)
19 PF02353 CMAS: Mycolic acid cy 99.7 2.1E-16 4.6E-21 132.7 14.5 163 29-245 60-223 (273)
20 PRK15068 tRNA mo(5)U34 methylt 99.7 2.8E-16 6E-21 135.3 15.4 105 31-146 122-226 (322)
21 PF13847 Methyltransf_31: Meth 99.7 1.4E-16 2.9E-21 123.0 12.1 117 31-157 3-122 (152)
22 PRK05785 hypothetical protein; 99.7 5.3E-17 1.1E-21 133.2 10.0 102 29-149 49-151 (226)
23 PRK11207 tellurite resistance 99.7 1.6E-16 3.6E-21 127.7 12.1 104 31-145 30-133 (197)
24 TIGR00740 methyltransferase, p 99.7 4E-16 8.8E-21 129.2 14.6 113 24-146 46-161 (239)
25 TIGR00452 methyltransferase, p 99.7 6.6E-16 1.4E-20 131.8 15.4 107 30-147 120-226 (314)
26 PF13649 Methyltransf_25: Meth 99.7 9.7E-17 2.1E-21 115.2 8.8 96 35-140 1-101 (101)
27 TIGR00477 tehB tellurite resis 99.7 4.6E-16 9.9E-21 124.9 12.8 103 31-145 30-132 (195)
28 KOG1271 Methyltransferases [Ge 99.7 2.4E-16 5.3E-21 120.9 10.5 139 12-157 47-194 (227)
29 smart00828 PKS_MT Methyltransf 99.7 5.6E-16 1.2E-20 127.0 13.4 104 33-147 1-105 (224)
30 TIGR02021 BchM-ChlM magnesium 99.7 4.7E-15 1E-19 121.2 18.2 102 31-144 55-156 (219)
31 PF07021 MetW: Methionine bios 99.7 1.6E-15 3.4E-20 118.8 13.4 165 23-241 5-169 (193)
32 PRK00107 gidB 16S rRNA methylt 99.7 2.4E-15 5.3E-20 119.5 14.5 130 3-148 16-147 (187)
33 PLN02336 phosphoethanolamine N 99.7 3.5E-15 7.6E-20 135.4 17.1 107 29-147 264-370 (475)
34 PRK10258 biotin biosynthesis p 99.7 7.9E-16 1.7E-20 128.3 11.8 112 22-150 32-144 (251)
35 PRK11705 cyclopropane fatty ac 99.7 5.9E-15 1.3E-19 129.8 17.5 155 29-246 165-319 (383)
36 PF03848 TehB: Tellurite resis 99.7 1.2E-15 2.7E-20 120.7 11.8 103 31-145 30-132 (192)
37 TIGR03587 Pse_Me-ase pseudamin 99.6 2.8E-15 6E-20 121.0 13.1 124 3-145 17-141 (204)
38 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.2E-15 2.5E-20 131.3 11.5 103 30-146 112-215 (340)
39 TIGR03438 probable methyltrans 99.6 3E-14 6.5E-19 121.8 19.4 113 29-145 61-176 (301)
40 PRK12335 tellurite resistance 99.6 2.4E-15 5.2E-20 127.8 12.6 103 31-145 120-222 (287)
41 PRK14103 trans-aconitate 2-met 99.6 1.5E-15 3.2E-20 127.0 10.5 106 24-148 21-128 (255)
42 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.3E-14 2.9E-19 117.7 15.7 108 30-145 33-151 (213)
43 PRK01683 trans-aconitate 2-met 99.6 1.5E-15 3.2E-20 127.2 10.5 104 29-149 29-133 (258)
44 PF08242 Methyltransf_12: Meth 99.6 6.8E-17 1.5E-21 115.5 1.9 98 36-142 1-99 (99)
45 TIGR00138 gidB 16S rRNA methyl 99.6 1.1E-14 2.3E-19 115.5 14.5 127 4-147 15-143 (181)
46 PF05401 NodS: Nodulation prot 99.6 5.6E-15 1.2E-19 115.9 10.6 105 31-147 43-147 (201)
47 smart00138 MeTrc Methyltransfe 99.6 6.9E-15 1.5E-19 123.3 11.9 122 16-145 83-241 (264)
48 PRK06202 hypothetical protein; 99.6 1.7E-14 3.6E-19 119.0 14.0 102 30-145 59-165 (232)
49 PRK05134 bifunctional 3-demeth 99.6 2.8E-14 6.1E-19 117.6 14.5 108 30-149 47-154 (233)
50 PLN02585 magnesium protoporphy 99.6 1.5E-13 3.2E-18 117.6 19.2 105 31-148 144-252 (315)
51 TIGR01983 UbiG ubiquinone bios 99.6 4.4E-14 9.6E-19 115.7 15.0 109 31-150 45-153 (224)
52 PRK07580 Mg-protoporphyrin IX 99.6 1.8E-13 3.9E-18 112.5 18.1 99 30-140 62-160 (230)
53 KOG4300 Predicted methyltransf 99.6 1.7E-14 3.6E-19 113.0 10.4 115 33-158 78-196 (252)
54 PRK00121 trmB tRNA (guanine-N( 99.6 1.9E-14 4.1E-19 116.2 11.0 121 29-154 38-164 (202)
55 PF05175 MTS: Methyltransferas 99.6 6.5E-14 1.4E-18 110.0 13.8 111 31-149 31-143 (170)
56 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 1.2E-13 2.5E-18 112.8 15.7 103 30-145 38-142 (223)
57 TIGR02469 CbiT precorrin-6Y C5 99.6 1.2E-13 2.5E-18 102.3 13.9 111 24-147 11-123 (124)
58 PRK11088 rrmA 23S rRNA methylt 99.6 3.6E-14 7.8E-19 119.7 12.2 101 31-154 85-189 (272)
59 TIGR02072 BioC biotin biosynth 99.6 3.7E-14 8.1E-19 116.9 11.9 107 31-152 34-141 (240)
60 PRK06922 hypothetical protein; 99.6 3E-14 6.5E-19 130.1 12.3 108 31-146 418-537 (677)
61 PRK11873 arsM arsenite S-adeno 99.5 5.4E-14 1.2E-18 118.7 10.9 106 29-145 75-182 (272)
62 PRK13255 thiopurine S-methyltr 99.5 2E-13 4.4E-18 111.2 13.3 108 29-144 35-153 (218)
63 PRK00216 ubiE ubiquinone/menaq 99.5 1.3E-13 2.8E-18 113.7 12.1 105 31-145 51-157 (239)
64 COG4106 Tam Trans-aconitate me 99.5 2.2E-14 4.8E-19 113.1 7.0 102 31-149 30-132 (257)
65 PRK08317 hypothetical protein; 99.5 2.1E-13 4.5E-18 112.3 13.2 108 29-148 17-126 (241)
66 TIGR00406 prmA ribosomal prote 99.5 2.9E-13 6.3E-18 115.0 14.1 110 25-149 153-262 (288)
67 PF08003 Methyltransf_9: Prote 99.5 3.7E-13 8.1E-18 112.2 14.1 103 31-146 115-219 (315)
68 PLN03075 nicotianamine synthas 99.5 2.8E-13 6.1E-18 113.9 13.6 108 31-147 123-234 (296)
69 KOG2361 Predicted methyltransf 99.5 1.2E-13 2.6E-18 110.8 10.5 159 34-237 74-235 (264)
70 TIGR02081 metW methionine bios 99.5 4.9E-13 1.1E-17 107.3 13.4 160 26-241 8-169 (194)
71 PRK15001 SAM-dependent 23S rib 99.5 6.6E-13 1.4E-17 115.9 15.2 109 32-147 229-341 (378)
72 PF13659 Methyltransf_26: Meth 99.5 6.5E-14 1.4E-18 102.9 7.2 113 32-148 1-117 (117)
73 KOG3010 Methyltransferase [Gen 99.5 1.1E-13 2.4E-18 111.0 8.4 125 4-146 12-137 (261)
74 PRK13944 protein-L-isoaspartat 99.5 8.8E-13 1.9E-17 106.7 13.3 102 29-146 70-173 (205)
75 PRK08287 cobalt-precorrin-6Y C 99.5 1.6E-12 3.5E-17 103.7 14.6 103 29-147 29-132 (187)
76 PRK00377 cbiT cobalt-precorrin 99.5 1.8E-12 4E-17 104.3 14.4 121 20-152 28-151 (198)
77 TIGR00537 hemK_rel_arch HemK-r 99.5 7.6E-13 1.6E-17 104.8 11.8 107 31-148 19-142 (179)
78 PLN02336 phosphoethanolamine N 99.5 6.4E-13 1.4E-17 120.6 12.9 105 31-145 37-141 (475)
79 TIGR02716 C20_methyl_CrtF C-20 99.5 1.3E-12 2.9E-17 112.0 13.8 105 30-145 148-253 (306)
80 TIGR00091 tRNA (guanine-N(7)-) 99.5 6E-13 1.3E-17 106.7 10.4 117 30-151 15-137 (194)
81 PRK11188 rrmJ 23S rRNA methylt 99.5 1.4E-12 3E-17 105.7 12.5 116 29-156 49-175 (209)
82 PRK09489 rsmC 16S ribosomal RN 99.4 2.1E-12 4.5E-17 112.0 14.1 108 31-148 196-305 (342)
83 PRK00517 prmA ribosomal protei 99.4 2.1E-12 4.6E-17 107.6 13.3 102 27-149 115-216 (250)
84 PRK04266 fibrillarin; Provisio 99.4 2E-12 4.3E-17 105.8 12.8 108 29-148 70-178 (226)
85 PRK14967 putative methyltransf 99.4 3.2E-12 7E-17 104.8 13.6 111 29-148 34-161 (223)
86 TIGR01177 conserved hypothetic 99.4 1.7E-12 3.7E-17 112.4 12.4 121 29-157 180-305 (329)
87 PRK13942 protein-L-isoaspartat 99.4 3.2E-12 6.8E-17 104.0 12.6 101 29-146 74-176 (212)
88 PLN02232 ubiquinone biosynthes 99.4 2.5E-13 5.3E-18 105.7 5.6 80 58-147 1-82 (160)
89 PF06325 PrmA: Ribosomal prote 99.4 1.6E-12 3.5E-17 109.9 11.0 106 23-145 153-258 (295)
90 COG2264 PrmA Ribosomal protein 99.4 1.7E-12 3.7E-17 108.9 10.7 109 24-146 155-263 (300)
91 PRK13256 thiopurine S-methyltr 99.4 3.9E-12 8.4E-17 103.5 12.0 114 29-148 41-165 (226)
92 TIGR00080 pimt protein-L-isoas 99.4 4.9E-12 1.1E-16 103.1 12.1 101 29-146 75-177 (215)
93 TIGR03533 L3_gln_methyl protei 99.4 1.5E-11 3.4E-16 104.2 15.5 112 31-149 121-254 (284)
94 COG4976 Predicted methyltransf 99.4 7.1E-13 1.5E-17 105.5 6.2 140 32-239 126-265 (287)
95 PRK14968 putative methyltransf 99.4 9.3E-12 2E-16 98.9 12.6 112 30-149 22-151 (188)
96 KOG1541 Predicted protein carb 99.4 1.4E-11 3.1E-16 97.6 12.3 117 27-156 44-171 (270)
97 PRK11805 N5-glutamine S-adenos 99.4 2.8E-11 6.2E-16 103.6 15.1 110 33-149 135-266 (307)
98 PTZ00146 fibrillarin; Provisio 99.4 1.1E-11 2.4E-16 103.9 12.2 105 29-145 130-236 (293)
99 PRK07402 precorrin-6B methylas 99.3 1.9E-11 4.1E-16 98.2 12.5 110 30-153 39-149 (196)
100 PRK04457 spermidine synthase; 99.3 2.7E-11 5.8E-16 101.5 13.8 117 30-152 65-183 (262)
101 TIGR00536 hemK_fam HemK family 99.3 3.3E-11 7.2E-16 102.3 14.5 110 33-149 116-247 (284)
102 COG4123 Predicted O-methyltran 99.3 8.5E-12 1.8E-16 102.1 10.1 134 20-157 31-183 (248)
103 TIGR00438 rrmJ cell division p 99.3 1.9E-11 4.1E-16 97.6 11.5 109 29-149 30-149 (188)
104 PRK00312 pcm protein-L-isoaspa 99.3 3.4E-11 7.4E-16 97.9 13.2 101 29-147 76-176 (212)
105 PRK14121 tRNA (guanine-N(7)-)- 99.3 3E-11 6.6E-16 105.3 13.3 116 31-152 122-241 (390)
106 PF06080 DUF938: Protein of un 99.3 1.1E-10 2.4E-15 92.8 15.2 119 25-145 18-140 (204)
107 TIGR03534 RF_mod_PrmC protein- 99.3 5.2E-11 1.1E-15 99.0 13.8 110 30-147 86-218 (251)
108 PRK14966 unknown domain/N5-glu 99.3 6.7E-11 1.5E-15 103.8 14.6 121 30-157 250-394 (423)
109 cd02440 AdoMet_MTases S-adenos 99.3 4.3E-11 9.2E-16 84.6 10.7 103 34-145 1-103 (107)
110 COG2813 RsmC 16S RNA G1207 met 99.3 6.2E-11 1.3E-15 99.1 12.6 118 31-157 158-277 (300)
111 PRK00811 spermidine synthase; 99.3 4.7E-11 1E-15 101.2 12.0 113 30-147 75-192 (283)
112 PRK09328 N5-glutamine S-adenos 99.3 9.2E-11 2E-15 99.0 13.7 109 30-146 107-238 (275)
113 COG2242 CobL Precorrin-6B meth 99.3 1.9E-10 4E-15 89.8 14.1 124 19-157 21-146 (187)
114 PF05891 Methyltransf_PK: AdoM 99.3 2.6E-11 5.6E-16 96.9 9.5 106 31-145 55-160 (218)
115 PF05724 TPMT: Thiopurine S-me 99.3 2.8E-11 6.1E-16 98.5 9.9 110 28-145 34-154 (218)
116 PRK01544 bifunctional N5-gluta 99.2 1.2E-10 2.7E-15 106.0 13.3 109 31-146 138-269 (506)
117 PRK15128 23S rRNA m(5)C1962 me 99.2 1.8E-10 4E-15 101.7 13.2 116 31-148 220-341 (396)
118 PLN02781 Probable caffeoyl-CoA 99.2 1.9E-10 4E-15 94.9 12.1 106 31-145 68-177 (234)
119 PF01739 CheR: CheR methyltran 99.2 3.8E-10 8.3E-15 90.2 12.1 107 31-145 31-174 (196)
120 PRK13943 protein-L-isoaspartat 99.2 3.3E-10 7.1E-15 97.3 12.3 101 29-146 78-180 (322)
121 smart00650 rADc Ribosomal RNA 99.2 2.6E-10 5.6E-15 89.4 10.8 109 29-152 11-119 (169)
122 TIGR03704 PrmC_rel_meth putati 99.2 8.1E-10 1.8E-14 92.1 13.4 110 32-149 87-219 (251)
123 PRK14904 16S rRNA methyltransf 99.2 6.1E-10 1.3E-14 100.3 13.3 109 31-148 250-379 (445)
124 PF01135 PCMT: Protein-L-isoas 99.2 2.2E-10 4.7E-15 92.6 9.3 102 29-147 70-173 (209)
125 PRK11783 rlmL 23S rRNA m(2)G24 99.2 4.6E-10 1E-14 106.2 12.9 112 31-147 538-657 (702)
126 PRK10901 16S rRNA methyltransf 99.1 1E-09 2.3E-14 98.3 14.5 111 30-147 243-373 (427)
127 TIGR00446 nop2p NOL1/NOP2/sun 99.1 6.5E-10 1.4E-14 93.4 11.7 111 30-147 70-200 (264)
128 PHA03411 putative methyltransf 99.1 3.6E-10 7.8E-15 94.0 9.7 102 31-145 64-182 (279)
129 PRK01581 speE spermidine synth 99.1 1.7E-09 3.7E-14 93.3 14.1 113 30-147 149-269 (374)
130 COG2518 Pcm Protein-L-isoaspar 99.1 8.3E-10 1.8E-14 88.0 11.2 107 23-147 63-170 (209)
131 COG2890 HemK Methylase of poly 99.1 1.4E-09 3E-14 91.9 13.0 115 34-157 113-251 (280)
132 PRK14903 16S rRNA methyltransf 99.1 1.1E-09 2.3E-14 98.2 12.9 113 30-148 236-368 (431)
133 KOG2940 Predicted methyltransf 99.1 2.7E-10 5.8E-15 91.0 7.8 112 31-155 72-183 (325)
134 TIGR00563 rsmB ribosomal RNA s 99.1 1.4E-09 3E-14 97.5 13.0 114 30-147 237-369 (426)
135 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.1 2.8E-09 6.1E-14 88.2 13.7 131 15-145 37-198 (256)
136 KOG2904 Predicted methyltransf 99.1 3.1E-09 6.7E-14 87.1 13.4 148 6-156 125-298 (328)
137 TIGR00417 speE spermidine synt 99.1 1.2E-09 2.6E-14 92.1 11.4 111 31-148 72-188 (270)
138 PRK14901 16S rRNA methyltransf 99.1 1.7E-09 3.8E-14 97.0 13.2 114 30-146 251-384 (434)
139 PLN02366 spermidine synthase 99.1 1.5E-09 3.2E-14 92.8 11.8 112 29-145 89-205 (308)
140 PRK14902 16S rRNA methyltransf 99.1 2.6E-09 5.6E-14 96.2 13.8 112 30-147 249-380 (444)
141 KOG1499 Protein arginine N-met 99.0 1.6E-09 3.4E-14 92.0 10.4 107 29-143 58-164 (346)
142 PHA03412 putative methyltransf 99.0 1E-09 2.2E-14 89.4 8.7 98 31-141 49-158 (241)
143 COG2519 GCD14 tRNA(1-methylade 99.0 3.8E-09 8.1E-14 86.2 11.9 113 29-157 92-206 (256)
144 PRK10909 rsmD 16S rRNA m(2)G96 99.0 4.3E-09 9.3E-14 84.5 12.1 120 18-148 38-161 (199)
145 PLN02476 O-methyltransferase 99.0 6E-09 1.3E-13 87.4 12.0 106 31-145 118-227 (278)
146 PF01596 Methyltransf_3: O-met 99.0 3.8E-09 8.2E-14 85.2 10.4 106 31-145 45-154 (205)
147 COG1092 Predicted SAM-dependen 99.0 4.7E-09 1E-13 91.9 11.5 122 25-149 212-339 (393)
148 COG2263 Predicted RNA methylas 99.0 2.2E-09 4.9E-14 83.6 8.3 72 31-113 45-116 (198)
149 TIGR00095 RNA methyltransferas 99.0 1.8E-08 3.9E-13 80.4 13.8 113 31-148 49-161 (189)
150 PF08704 GCD14: tRNA methyltra 99.0 9.9E-09 2.1E-13 84.8 12.3 120 27-158 36-158 (247)
151 PF00891 Methyltransf_2: O-met 99.0 9.5E-09 2.1E-13 85.2 12.3 96 31-145 100-198 (241)
152 PF02390 Methyltransf_4: Putat 99.0 1.8E-08 3.9E-13 80.8 13.2 118 31-152 17-139 (195)
153 PRK10611 chemotaxis methyltran 99.0 6.7E-09 1.4E-13 87.7 10.9 107 32-145 116-261 (287)
154 PRK13168 rumA 23S rRNA m(5)U19 99.0 1.5E-08 3.2E-13 91.3 13.8 115 30-157 296-410 (443)
155 COG1352 CheR Methylase of chem 99.0 1.2E-08 2.7E-13 85.1 12.2 124 14-145 79-240 (268)
156 PRK03612 spermidine synthase; 99.0 4.8E-09 1E-13 96.1 10.5 112 30-146 296-415 (521)
157 KOG2899 Predicted methyltransf 98.9 4.4E-09 9.6E-14 84.7 8.5 115 31-145 58-208 (288)
158 COG1041 Predicted DNA modifica 98.9 1.3E-08 2.8E-13 86.9 10.2 119 21-147 186-311 (347)
159 PF05185 PRMT5: PRMT5 arginine 98.9 2.6E-08 5.6E-13 89.3 12.3 103 32-143 187-294 (448)
160 COG4122 Predicted O-methyltran 98.9 3.1E-08 6.8E-13 80.1 11.6 104 31-145 59-165 (219)
161 PRK03522 rumB 23S rRNA methylu 98.9 8E-09 1.7E-13 89.0 8.6 111 31-156 173-283 (315)
162 PF12147 Methyltransf_20: Puta 98.9 9.4E-08 2E-12 79.5 14.0 112 31-146 135-249 (311)
163 PF03602 Cons_hypoth95: Conser 98.9 3.6E-08 7.8E-13 78.2 11.1 113 31-149 42-156 (183)
164 PF01170 UPF0020: Putative RNA 98.8 5.2E-08 1.1E-12 77.1 11.7 131 8-145 4-149 (179)
165 PF10294 Methyltransf_16: Puta 98.8 1.8E-08 3.9E-13 79.3 9.0 113 29-148 43-158 (173)
166 TIGR03439 methyl_EasF probable 98.8 2.1E-07 4.6E-12 79.8 16.1 114 28-145 73-196 (319)
167 PLN02589 caffeoyl-CoA O-methyl 98.8 4.9E-08 1.1E-12 80.8 11.3 106 31-145 79-189 (247)
168 PF10672 Methyltrans_SAM: S-ad 98.8 4.8E-08 1E-12 82.4 11.1 115 31-149 123-241 (286)
169 PLN02672 methionine S-methyltr 98.8 3.2E-08 7E-13 96.2 11.2 111 32-147 119-279 (1082)
170 COG0220 Predicted S-adenosylme 98.8 5.7E-08 1.2E-12 79.3 10.1 118 33-154 50-172 (227)
171 PTZ00338 dimethyladenosine tra 98.8 3.5E-08 7.5E-13 84.0 8.9 84 21-113 25-109 (294)
172 COG3963 Phospholipid N-methylt 98.8 9.2E-08 2E-12 73.0 10.2 108 31-148 48-158 (194)
173 PRK04148 hypothetical protein; 98.8 1.3E-07 2.8E-12 70.6 10.7 96 31-149 16-112 (134)
174 PF05219 DREV: DREV methyltran 98.8 5.1E-08 1.1E-12 80.0 9.1 95 31-146 94-188 (265)
175 TIGR00478 tly hemolysin TlyA f 98.8 4.2E-08 9.2E-13 80.2 8.5 96 31-146 75-171 (228)
176 TIGR00479 rumA 23S rRNA (uraci 98.7 7.7E-08 1.7E-12 86.5 10.9 115 30-156 291-405 (431)
177 PRK11727 23S rRNA mA1618 methy 98.7 5.6E-07 1.2E-11 77.2 15.6 85 31-117 114-201 (321)
178 PRK00274 ksgA 16S ribosomal RN 98.7 4.4E-08 9.6E-13 82.7 8.6 82 21-113 31-113 (272)
179 PF05148 Methyltransf_8: Hypot 98.7 5.3E-08 1.1E-12 77.4 8.2 87 30-145 71-157 (219)
180 TIGR02085 meth_trns_rumB 23S r 98.7 1.7E-07 3.6E-12 82.6 11.9 112 31-157 233-344 (374)
181 KOG3420 Predicted RNA methylas 98.7 3.1E-08 6.8E-13 73.8 5.7 75 31-113 48-122 (185)
182 KOG1500 Protein arginine N-met 98.7 1.6E-07 3.5E-12 79.2 10.5 105 31-145 177-281 (517)
183 PRK14896 ksgA 16S ribosomal RN 98.7 1.1E-07 2.3E-12 79.7 9.5 83 21-115 18-101 (258)
184 TIGR00755 ksgA dimethyladenosi 98.7 4.2E-07 9E-12 75.9 12.7 86 19-116 16-105 (253)
185 KOG3178 Hydroxyindole-O-methyl 98.6 2.2E-07 4.9E-12 79.1 10.0 97 32-145 178-274 (342)
186 PLN02823 spermine synthase 98.6 4.4E-07 9.5E-12 78.5 10.9 111 31-146 103-220 (336)
187 KOG3045 Predicted RNA methylas 98.6 2.9E-07 6.2E-12 75.1 8.7 85 30-145 179-263 (325)
188 PF02475 Met_10: Met-10+ like- 98.6 1.7E-07 3.6E-12 75.2 7.0 101 27-142 97-198 (200)
189 PF11968 DUF3321: Putative met 98.6 5.5E-07 1.2E-11 72.1 9.3 113 16-150 35-153 (219)
190 COG0293 FtsJ 23S rRNA methylas 98.5 1E-06 2.2E-11 70.3 10.4 117 29-158 43-174 (205)
191 KOG0820 Ribosomal RNA adenine 98.5 6.3E-07 1.4E-11 73.7 8.8 74 29-111 56-129 (315)
192 KOG1663 O-methyltransferase [S 98.5 2.4E-06 5.2E-11 68.8 11.7 107 31-145 73-182 (237)
193 PF01728 FtsJ: FtsJ-like methy 98.5 1.7E-07 3.8E-12 74.2 5.0 116 31-158 23-154 (181)
194 PRK04338 N(2),N(2)-dimethylgua 98.5 9.3E-07 2E-11 77.9 10.0 108 32-154 58-166 (382)
195 COG0742 N6-adenine-specific me 98.5 3.1E-06 6.8E-11 66.6 11.8 113 31-149 43-157 (187)
196 KOG3191 Predicted N6-DNA-methy 98.5 1.6E-06 3.5E-11 67.2 9.4 117 31-156 43-181 (209)
197 PF07942 N2227: N2227-like pro 98.4 1E-05 2.2E-10 67.6 14.6 116 18-143 38-199 (270)
198 KOG1661 Protein-L-isoaspartate 98.4 9.7E-07 2.1E-11 70.0 8.0 104 26-145 77-192 (237)
199 PF01564 Spermine_synth: Sperm 98.4 1.3E-06 2.8E-11 72.6 9.0 113 29-146 74-191 (246)
200 PRK00050 16S rRNA m(4)C1402 me 98.4 1.2E-06 2.5E-11 74.4 8.8 86 23-113 10-98 (296)
201 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.7E-06 3.6E-11 74.5 9.0 115 31-149 46-186 (311)
202 COG0421 SpeE Spermidine syntha 98.4 4.5E-06 9.7E-11 70.4 10.9 106 33-145 78-189 (282)
203 KOG1331 Predicted methyltransf 98.4 4.6E-07 1E-11 75.0 4.4 99 31-146 45-143 (293)
204 PRK05031 tRNA (uracil-5-)-meth 98.4 8.3E-06 1.8E-10 71.6 12.6 112 32-157 207-330 (362)
205 PRK01544 bifunctional N5-gluta 98.3 4.6E-06 1E-10 76.3 10.9 118 31-153 347-469 (506)
206 KOG2352 Predicted spermine/spe 98.3 6.5E-06 1.4E-10 73.1 11.1 128 10-145 25-160 (482)
207 PRK11933 yebU rRNA (cytosine-C 98.3 5.6E-06 1.2E-10 74.7 11.0 113 30-148 112-244 (470)
208 COG0500 SmtA SAM-dependent met 98.3 1.1E-05 2.4E-10 60.7 11.2 102 35-149 52-158 (257)
209 TIGR00308 TRM1 tRNA(guanine-26 98.3 3.1E-06 6.6E-11 74.4 8.9 103 33-149 46-150 (374)
210 PF08123 DOT1: Histone methyla 98.3 1E-05 2.2E-10 65.2 11.1 120 18-145 29-157 (205)
211 KOG1269 SAM-dependent methyltr 98.3 1.2E-06 2.6E-11 76.4 6.1 109 27-145 106-214 (364)
212 TIGR02143 trmA_only tRNA (urac 98.3 9.7E-06 2.1E-10 71.0 10.9 112 32-157 198-321 (353)
213 PF03141 Methyltransf_29: Puta 98.2 7.5E-07 1.6E-11 79.3 3.1 100 33-148 119-221 (506)
214 COG2520 Predicted methyltransf 98.2 8.2E-06 1.8E-10 70.3 9.3 107 25-145 182-288 (341)
215 PRK11783 rlmL 23S rRNA m(2)G24 98.2 2.8E-05 6.2E-10 74.0 13.2 131 16-150 173-351 (702)
216 PF09243 Rsm22: Mitochondrial 98.2 1.3E-05 2.9E-10 67.7 9.8 119 31-160 33-156 (274)
217 TIGR02987 met_A_Alw26 type II 98.2 1.6E-05 3.5E-10 73.3 11.0 80 31-112 31-119 (524)
218 PF09445 Methyltransf_15: RNA 98.2 5.7E-06 1.2E-10 64.0 6.5 74 34-112 2-76 (163)
219 KOG4589 Cell division protein 98.2 2.1E-05 4.6E-10 61.4 9.4 110 29-150 67-188 (232)
220 PF01269 Fibrillarin: Fibrilla 98.1 2.9E-05 6.2E-10 62.6 10.2 104 30-145 72-177 (229)
221 COG0030 KsgA Dimethyladenosine 98.1 1.5E-05 3.2E-10 66.1 8.8 75 29-112 28-102 (259)
222 PRK00536 speE spermidine synth 98.1 2E-05 4.3E-10 65.8 9.4 97 30-145 71-170 (262)
223 KOG2915 tRNA(1-methyladenosine 98.1 3.6E-05 7.9E-10 63.5 10.0 112 29-153 103-217 (314)
224 PF04672 Methyltransf_19: S-ad 98.1 2.9E-05 6.2E-10 64.6 9.5 111 33-147 70-191 (267)
225 PF02527 GidB: rRNA small subu 98.1 6.3E-05 1.4E-09 59.6 10.7 103 27-145 43-147 (184)
226 PF13679 Methyltransf_32: Meth 98.1 8.1E-05 1.8E-09 56.5 10.9 105 30-150 24-135 (141)
227 COG0116 Predicted N6-adenine-s 98.0 0.00015 3.3E-09 63.1 13.5 136 16-157 175-355 (381)
228 COG2521 Predicted archaeal met 98.0 1.1E-05 2.3E-10 65.2 4.6 110 31-145 134-244 (287)
229 PF04816 DUF633: Family of unk 97.9 0.00015 3.3E-09 58.5 11.1 112 35-158 1-114 (205)
230 COG1189 Predicted rRNA methyla 97.9 6.9E-05 1.5E-09 60.9 8.8 102 30-147 78-179 (245)
231 PF03059 NAS: Nicotianamine sy 97.9 0.00024 5.3E-09 59.6 11.4 109 32-149 121-233 (276)
232 PF06962 rRNA_methylase: Putat 97.9 0.00014 2.9E-09 54.8 8.7 87 56-148 1-94 (140)
233 COG2265 TrmA SAM-dependent met 97.9 6.7E-05 1.4E-09 67.2 8.3 113 31-157 293-406 (432)
234 PF00398 RrnaAD: Ribosomal RNA 97.8 0.00092 2E-08 56.1 14.7 88 18-112 16-104 (262)
235 COG1889 NOP1 Fibrillarin-like 97.8 0.00079 1.7E-08 53.4 12.9 115 30-156 75-198 (231)
236 KOG2798 Putative trehalase [Ca 97.8 0.0006 1.3E-08 57.5 11.9 108 32-144 151-294 (369)
237 COG0144 Sun tRNA and rRNA cyto 97.7 0.00098 2.1E-08 58.4 13.2 121 22-147 145-289 (355)
238 KOG2730 Methylase [General fun 97.7 4.9E-05 1.1E-09 60.8 4.5 102 31-139 94-195 (263)
239 PRK11760 putative 23S rRNA C24 97.7 0.00021 4.5E-09 61.5 8.5 94 29-145 209-304 (357)
240 KOG3987 Uncharacterized conser 97.6 1.6E-05 3.5E-10 63.0 0.9 94 31-145 112-206 (288)
241 PF13578 Methyltransf_24: Meth 97.6 0.00013 2.8E-09 52.4 5.2 100 36-145 1-104 (106)
242 PF05958 tRNA_U5-meth_tr: tRNA 97.6 0.0005 1.1E-08 60.2 9.6 57 33-91 198-254 (352)
243 COG3897 Predicted methyltransf 97.6 0.00028 6.1E-09 55.6 7.1 106 31-152 79-185 (218)
244 COG2384 Predicted SAM-dependen 97.5 0.0036 7.7E-08 50.5 12.6 120 25-157 10-132 (226)
245 TIGR01444 fkbM_fam methyltrans 97.5 0.00039 8.4E-09 52.5 6.7 58 34-92 1-59 (143)
246 COG4301 Uncharacterized conser 97.5 0.01 2.3E-07 48.7 14.9 108 31-145 78-192 (321)
247 COG0357 GidB Predicted S-adeno 97.5 0.0012 2.7E-08 53.4 9.6 98 32-145 68-167 (215)
248 PF04989 CmcI: Cephalosporin h 97.4 0.00038 8.2E-09 55.8 6.1 108 31-145 32-146 (206)
249 TIGR00006 S-adenosyl-methyltra 97.4 0.0013 2.7E-08 56.2 9.4 85 24-112 12-99 (305)
250 PF11599 AviRa: RRNA methyltra 97.4 0.0043 9.2E-08 49.8 11.3 113 31-144 51-212 (246)
251 PF05971 Methyltransf_10: Prot 97.3 0.0023 5E-08 54.4 10.2 98 18-117 87-189 (299)
252 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.3 0.00081 1.8E-08 57.1 7.4 113 30-147 84-220 (283)
253 KOG3201 Uncharacterized conser 97.3 0.00049 1.1E-08 52.6 5.1 119 31-157 29-151 (201)
254 KOG1709 Guanidinoacetate methy 97.2 0.0031 6.7E-08 50.6 8.9 107 29-145 99-205 (271)
255 COG0275 Predicted S-adenosylme 97.2 0.018 4E-07 48.6 13.9 48 29-76 21-70 (314)
256 COG4076 Predicted RNA methylas 97.2 0.00065 1.4E-08 53.3 4.9 101 32-144 33-133 (252)
257 KOG2187 tRNA uracil-5-methyltr 97.2 0.00073 1.6E-08 60.6 5.7 66 23-90 373-440 (534)
258 PF03492 Methyltransf_7: SAM d 97.1 0.017 3.6E-07 50.3 13.3 114 29-149 14-186 (334)
259 PF07091 FmrO: Ribosomal RNA m 97.0 0.0026 5.6E-08 52.4 7.3 80 29-117 103-183 (251)
260 PF02005 TRM: N2,N2-dimethylgu 97.0 0.0036 7.8E-08 55.2 8.2 107 31-150 49-158 (377)
261 COG4262 Predicted spermidine s 96.9 0.015 3.3E-07 50.4 10.9 112 31-147 289-408 (508)
262 PRK10742 putative methyltransf 96.8 0.012 2.7E-07 48.5 9.1 80 30-115 85-174 (250)
263 COG4627 Uncharacterized protei 96.7 0.00087 1.9E-08 50.9 2.1 56 102-159 44-99 (185)
264 PRK11524 putative methyltransf 96.7 0.0057 1.2E-07 52.0 7.0 57 19-76 196-252 (284)
265 COG0286 HsdM Type I restrictio 96.7 0.017 3.7E-07 52.9 10.2 118 31-149 186-329 (489)
266 PLN02668 indole-3-acetate carb 96.6 0.057 1.2E-06 47.7 12.7 48 102-149 159-240 (386)
267 PF01555 N6_N4_Mtase: DNA meth 96.6 0.0059 1.3E-07 49.5 6.3 53 19-72 179-231 (231)
268 KOG1596 Fibrillarin and relate 96.6 0.017 3.7E-07 47.2 8.4 106 28-145 153-260 (317)
269 KOG4058 Uncharacterized conser 96.6 0.035 7.5E-07 42.0 9.3 106 30-150 71-177 (199)
270 PRK13699 putative methylase; P 96.5 0.011 2.3E-07 48.6 7.2 56 20-76 152-207 (227)
271 KOG1099 SAM-dependent methyltr 96.5 0.0066 1.4E-07 49.2 5.5 115 32-158 42-178 (294)
272 COG5459 Predicted rRNA methyla 96.4 0.013 2.9E-07 50.4 7.0 122 31-159 113-241 (484)
273 KOG1122 tRNA and rRNA cytosine 96.3 0.042 9.1E-07 48.5 10.0 111 31-146 241-371 (460)
274 PF06859 Bin3: Bicoid-interact 96.2 0.0029 6.3E-08 45.3 2.1 41 105-145 1-43 (110)
275 PF01861 DUF43: Protein of unk 96.2 0.48 1E-05 39.0 14.7 108 31-149 44-152 (243)
276 KOG3115 Methyltransferase-like 96.0 0.035 7.6E-07 44.3 7.2 47 31-77 60-107 (249)
277 KOG1562 Spermidine synthase [A 96.0 0.089 1.9E-06 44.4 9.8 120 31-157 121-246 (337)
278 KOG2793 Putative N2,N2-dimethy 95.9 0.051 1.1E-06 45.0 8.0 109 32-147 87-200 (248)
279 cd00315 Cyt_C5_DNA_methylase C 95.9 0.02 4.3E-07 48.4 5.8 69 34-113 2-70 (275)
280 PF01795 Methyltransf_5: MraW 95.8 0.028 6.2E-07 48.1 6.3 79 29-111 18-99 (310)
281 KOG1253 tRNA methyltransferase 95.7 0.0037 8.1E-08 55.9 0.9 112 31-152 109-222 (525)
282 COG1064 AdhP Zn-dependent alco 95.7 0.072 1.6E-06 46.2 8.5 96 27-145 162-258 (339)
283 COG1867 TRM1 N2,N2-dimethylgua 95.6 0.085 1.8E-06 45.9 8.5 112 24-149 44-157 (380)
284 PF03269 DUF268: Caenorhabditi 95.5 0.027 5.9E-07 43.2 4.8 104 32-149 2-114 (177)
285 TIGR00027 mthyl_TIGR00027 meth 95.4 0.57 1.2E-05 39.3 13.0 113 32-149 82-200 (260)
286 KOG1227 Putative methyltransfe 95.4 0.012 2.6E-07 49.6 2.6 80 27-113 190-270 (351)
287 KOG1501 Arginine N-methyltrans 95.3 0.035 7.5E-07 49.3 5.2 56 33-88 68-123 (636)
288 PF11312 DUF3115: Protein of u 95.3 0.14 3.1E-06 43.6 8.7 113 33-145 88-241 (315)
289 COG3129 Predicted SAM-dependen 95.2 0.065 1.4E-06 43.7 6.3 85 31-117 78-165 (292)
290 PF04445 SAM_MT: Putative SAM- 95.0 0.094 2E-06 43.1 6.7 76 33-114 77-160 (234)
291 COG4798 Predicted methyltransf 95.0 0.14 3.1E-06 40.6 7.3 110 29-145 46-165 (238)
292 PF03514 GRAS: GRAS domain fam 94.9 0.56 1.2E-05 41.5 12.0 128 31-160 110-261 (374)
293 PHA01634 hypothetical protein 94.9 0.085 1.9E-06 38.9 5.6 46 31-76 28-73 (156)
294 KOG0024 Sorbitol dehydrogenase 94.9 0.13 2.8E-06 44.1 7.3 103 30-148 168-275 (354)
295 KOG2671 Putative RNA methylase 94.8 0.035 7.6E-07 47.7 3.9 115 29-149 206-357 (421)
296 PF03141 Methyltransf_29: Puta 94.8 0.065 1.4E-06 48.4 5.7 109 33-160 367-479 (506)
297 PF07757 AdoMet_MTase: Predict 94.4 0.046 1E-06 39.0 3.2 32 31-63 58-89 (112)
298 COG1063 Tdh Threonine dehydrog 94.4 0.29 6.3E-06 42.9 8.9 98 31-145 168-268 (350)
299 KOG2198 tRNA cytosine-5-methyl 94.2 0.62 1.3E-05 40.7 10.1 121 29-150 153-300 (375)
300 KOG0822 Protein kinase inhibit 93.9 0.21 4.6E-06 45.4 6.9 103 32-144 368-476 (649)
301 COG3510 CmcI Cephalosporin hyd 93.9 0.52 1.1E-05 37.5 8.2 105 31-145 69-179 (237)
302 cd08283 FDH_like_1 Glutathione 93.8 0.13 2.8E-06 45.6 5.5 108 29-145 182-305 (386)
303 PF04072 LCM: Leucine carboxyl 93.3 1.1 2.4E-05 35.3 9.5 99 31-132 77-182 (183)
304 PRK09424 pntA NAD(P) transhydr 93.2 0.51 1.1E-05 43.4 8.4 102 31-145 164-284 (509)
305 PF02254 TrkA_N: TrkA-N domain 93.2 0.68 1.5E-05 33.2 7.7 95 40-151 4-101 (116)
306 KOG2920 Predicted methyltransf 93.0 0.16 3.5E-06 42.6 4.5 51 18-68 103-153 (282)
307 KOG1098 Putative SAM-dependent 93.0 0.079 1.7E-06 48.9 2.8 120 27-158 40-173 (780)
308 PF00145 DNA_methylase: C-5 cy 92.6 0.21 4.6E-06 42.7 4.9 68 34-113 2-69 (335)
309 PRK09880 L-idonate 5-dehydroge 92.2 0.4 8.6E-06 41.6 6.2 96 30-145 168-265 (343)
310 KOG2539 Mitochondrial/chloropl 92.2 0.36 7.7E-06 43.4 5.8 124 32-159 201-331 (491)
311 PF12692 Methyltransf_17: S-ad 91.1 0.36 7.8E-06 36.6 4.0 105 31-145 28-133 (160)
312 TIGR00675 dcm DNA-methyltransf 91.0 0.37 7.9E-06 41.6 4.6 67 35-113 1-67 (315)
313 PF02636 Methyltransf_28: Puta 90.9 0.42 9.2E-06 39.8 4.7 59 18-76 4-72 (252)
314 COG3315 O-Methyltransferase in 90.7 9.9 0.00021 32.6 15.0 111 32-147 93-210 (297)
315 KOG2651 rRNA adenine N-6-methy 90.6 0.93 2E-05 39.8 6.5 52 21-72 141-194 (476)
316 cd08254 hydroxyacyl_CoA_DH 6-h 90.2 2.8 6.1E-05 35.7 9.5 98 29-145 163-262 (338)
317 COG1565 Uncharacterized conser 90.1 1.5 3.3E-05 38.2 7.5 59 18-76 64-131 (370)
318 KOG3924 Putative protein methy 89.9 3 6.4E-05 36.9 9.1 120 18-145 179-307 (419)
319 KOG2352 Predicted spermine/spe 89.2 1.6 3.4E-05 39.6 7.1 112 31-145 295-415 (482)
320 PTZ00357 methyltransferase; Pr 89.2 1.4 3.1E-05 41.7 6.9 107 33-141 702-830 (1072)
321 PF06016 Reovirus_L2: Reovirus 88.6 0.57 1.2E-05 46.9 4.2 102 31-145 822-926 (1289)
322 cd08237 ribitol-5-phosphate_DH 88.4 2.4 5.2E-05 36.8 7.8 92 29-145 161-255 (341)
323 PRK03659 glutathione-regulated 88.2 7.6 0.00016 36.7 11.4 104 33-153 401-505 (601)
324 KOG0821 Predicted ribosomal RN 88.1 2.3 4.9E-05 34.7 6.7 64 31-96 50-113 (326)
325 PRK03562 glutathione-regulated 88.1 5.9 0.00013 37.6 10.6 102 32-151 400-503 (621)
326 COG0270 Dcm Site-specific DNA 88.0 1.4 3E-05 38.3 5.9 72 32-113 3-75 (328)
327 COG1255 Uncharacterized protei 87.6 3.5 7.7E-05 29.9 6.7 86 33-145 15-101 (129)
328 TIGR03451 mycoS_dep_FDH mycoth 86.2 4.6 9.9E-05 35.2 8.3 98 29-145 174-275 (358)
329 TIGR02356 adenyl_thiF thiazole 86.0 16 0.00035 29.2 10.7 33 31-63 20-54 (202)
330 cd00401 AdoHcyase S-adenosyl-L 85.9 1.9 4.2E-05 38.6 5.8 85 31-145 201-288 (413)
331 TIGR00497 hsdM type I restrict 85.8 7.5 0.00016 35.9 9.7 114 31-149 217-358 (501)
332 COG0863 DNA modification methy 85.8 2.8 6.1E-05 35.4 6.6 53 23-76 214-266 (302)
333 TIGR00561 pntA NAD(P) transhyd 85.3 2 4.2E-05 39.7 5.6 101 31-143 163-281 (511)
334 PF05206 TRM13: Methyltransfer 84.8 7.8 0.00017 32.5 8.5 69 29-98 16-90 (259)
335 cd05188 MDR Medium chain reduc 84.5 9.4 0.0002 31.1 9.1 97 30-145 133-231 (271)
336 cd08281 liver_ADH_like1 Zinc-d 84.0 5.8 0.00012 34.8 7.9 98 29-145 189-289 (371)
337 PF05711 TylF: Macrocin-O-meth 83.7 21 0.00046 29.7 10.6 108 31-149 74-215 (248)
338 PF10354 DUF2431: Domain of un 83.4 6.1 0.00013 30.7 6.9 63 85-149 57-128 (166)
339 PF11899 DUF3419: Protein of u 83.3 3.2 7E-05 36.8 5.9 45 29-74 33-77 (380)
340 PRK10669 putative cation:proto 83.1 13 0.00029 34.7 10.3 100 33-149 418-518 (558)
341 PF00107 ADH_zinc_N: Zinc-bind 83.1 2.3 5E-05 30.9 4.4 84 43-145 3-88 (130)
342 cd08230 glucose_DH Glucose deh 82.6 8.4 0.00018 33.5 8.4 94 30-145 171-268 (355)
343 PLN02740 Alcohol dehydrogenase 82.6 8.4 0.00018 33.9 8.4 100 29-145 196-299 (381)
344 PF03686 UPF0146: Uncharacteri 82.4 2.8 6.1E-05 31.0 4.4 94 31-151 13-107 (127)
345 KOG1201 Hydroxysteroid 17-beta 82.4 8.3 0.00018 32.9 7.7 81 31-115 37-124 (300)
346 PRK08644 thiamine biosynthesis 82.2 25 0.00054 28.4 10.4 33 31-63 27-61 (212)
347 PRK11524 putative methyltransf 81.9 1.6 3.5E-05 37.0 3.4 60 83-146 9-80 (284)
348 TIGR03366 HpnZ_proposed putati 81.8 6.3 0.00014 33.0 7.0 97 30-145 119-217 (280)
349 TIGR02822 adh_fam_2 zinc-bindi 81.6 11 0.00024 32.4 8.6 90 29-145 163-253 (329)
350 TIGR02354 thiF_fam2 thiamine b 81.5 21 0.00046 28.5 9.6 98 31-138 20-137 (200)
351 COG1748 LYS9 Saccharopine dehy 81.5 9 0.0002 34.1 8.0 73 33-113 2-76 (389)
352 KOG2078 tRNA modification enzy 81.3 1.7 3.6E-05 38.8 3.3 62 28-90 246-308 (495)
353 TIGR01202 bchC 2-desacetyl-2-h 81.1 5.6 0.00012 33.9 6.6 85 31-145 144-230 (308)
354 cd08238 sorbose_phosphate_red 80.6 16 0.00034 32.6 9.5 107 29-145 173-287 (410)
355 PRK01747 mnmC bifunctional tRN 80.1 13 0.00029 35.4 9.3 119 31-157 57-216 (662)
356 PLN02827 Alcohol dehydrogenase 78.5 13 0.00028 32.7 8.2 100 29-145 191-294 (378)
357 COG5379 BtaA S-adenosylmethion 77.9 5.9 0.00013 33.8 5.4 44 31-75 63-106 (414)
358 cd08239 THR_DH_like L-threonin 77.8 19 0.00041 30.9 8.9 97 29-145 161-261 (339)
359 PRK10458 DNA cytosine methylas 77.7 4.9 0.00011 36.7 5.3 59 32-93 88-146 (467)
360 PRK13699 putative methylase; P 77.5 2.6 5.7E-05 34.5 3.3 23 123-145 49-71 (227)
361 cd08232 idonate-5-DH L-idonate 77.1 7.1 0.00015 33.5 6.1 95 31-145 165-261 (339)
362 COG0686 Ald Alanine dehydrogen 77.0 6.3 0.00014 34.0 5.4 103 31-148 167-270 (371)
363 PRK08267 short chain dehydroge 77.0 39 0.00084 27.6 10.3 78 33-115 2-87 (260)
364 PRK09496 trkA potassium transp 75.2 24 0.00052 31.7 9.2 74 31-112 230-304 (453)
365 PLN03154 putative allyl alcoho 74.5 33 0.00071 29.8 9.5 99 29-145 156-257 (348)
366 cd05278 FDH_like Formaldehyde 74.4 23 0.00049 30.3 8.5 98 29-145 165-266 (347)
367 PF03446 NAD_binding_2: NAD bi 74.0 11 0.00024 28.9 5.8 100 34-158 3-106 (163)
368 PRK09496 trkA potassium transp 73.9 31 0.00068 31.0 9.6 96 34-146 2-99 (453)
369 COG0569 TrkA K+ transport syst 73.6 15 0.00032 30.0 6.7 71 34-112 2-73 (225)
370 PRK06035 3-hydroxyacyl-CoA deh 73.3 14 0.0003 31.3 6.8 94 33-143 4-118 (291)
371 cd01487 E1_ThiF_like E1_ThiF_l 73.3 41 0.0009 26.2 9.7 31 34-64 1-33 (174)
372 cd08285 NADP_ADH NADP(H)-depen 73.0 25 0.00054 30.3 8.4 98 29-145 164-265 (351)
373 PF02737 3HCDH_N: 3-hydroxyacy 72.7 4.7 0.0001 31.7 3.5 95 34-145 1-113 (180)
374 PF11899 DUF3419: Protein of u 72.6 7 0.00015 34.7 4.9 60 81-146 275-334 (380)
375 TIGR03201 dearomat_had 6-hydro 72.6 18 0.00038 31.3 7.4 44 29-72 164-208 (349)
376 PRK12475 thiamine/molybdopteri 72.4 45 0.00098 29.1 9.8 79 31-113 23-124 (338)
377 PRK06701 short chain dehydroge 72.1 58 0.0013 27.4 10.3 112 31-145 45-180 (290)
378 PRK10309 galactitol-1-phosphat 71.8 31 0.00066 29.7 8.7 98 29-145 158-259 (347)
379 PRK07063 short chain dehydroge 71.7 36 0.00078 27.8 8.8 82 31-114 6-95 (260)
380 PRK05476 S-adenosyl-L-homocyst 71.3 18 0.00038 32.7 7.1 86 31-145 211-298 (425)
381 COG1568 Predicted methyltransf 70.9 36 0.00077 29.0 8.2 105 32-149 153-263 (354)
382 cd00757 ThiF_MoeB_HesA_family 70.6 45 0.00097 27.1 9.0 34 31-64 20-55 (228)
383 PRK10083 putative oxidoreducta 70.6 37 0.0008 29.0 8.9 98 29-145 158-258 (339)
384 PRK07688 thiamine/molybdopteri 70.5 56 0.0012 28.5 9.9 78 31-112 23-123 (339)
385 PRK05786 fabG 3-ketoacyl-(acyl 70.3 54 0.0012 26.2 10.5 112 31-146 4-135 (238)
386 PRK05854 short chain dehydroge 69.6 42 0.0009 28.6 9.0 83 31-115 13-103 (313)
387 PRK06128 oxidoreductase; Provi 69.5 68 0.0015 27.0 10.3 110 32-145 55-190 (300)
388 PRK05597 molybdopterin biosynt 69.1 58 0.0013 28.6 9.8 79 31-113 27-126 (355)
389 PRK07417 arogenate dehydrogena 68.9 55 0.0012 27.5 9.4 85 34-143 2-88 (279)
390 PRK07819 3-hydroxybutyryl-CoA 68.9 18 0.00038 30.7 6.4 96 33-145 6-120 (286)
391 cd08234 threonine_DH_like L-th 68.4 35 0.00075 29.0 8.3 97 30-145 158-256 (334)
392 cd00755 YgdL_like Family of ac 68.4 65 0.0014 26.5 9.4 34 31-64 10-45 (231)
393 PF07109 Mg-por_mtran_C: Magne 68.2 39 0.00084 23.8 7.9 77 115-239 6-82 (97)
394 PRK08324 short chain dehydroge 68.0 33 0.00072 33.0 8.7 111 31-145 421-556 (681)
395 KOG1209 1-Acyl dihydroxyaceton 67.7 35 0.00075 28.0 7.3 78 31-116 6-92 (289)
396 PRK07062 short chain dehydroge 66.9 51 0.0011 27.0 8.8 84 31-115 7-97 (265)
397 cd08245 CAD Cinnamyl alcohol d 66.4 40 0.00087 28.6 8.2 95 29-145 160-255 (330)
398 TIGR02818 adh_III_F_hyde S-(hy 66.4 40 0.00086 29.5 8.3 44 29-72 183-228 (368)
399 KOG0023 Alcohol dehydrogenase, 66.3 59 0.0013 28.3 8.8 100 27-145 177-278 (360)
400 COG2933 Predicted SAM-dependen 66.3 25 0.00055 29.6 6.4 70 29-113 209-278 (358)
401 PRK08265 short chain dehydroge 66.2 72 0.0016 26.1 10.1 76 32-114 6-89 (261)
402 PLN02586 probable cinnamyl alc 66.0 34 0.00074 29.8 7.8 94 30-145 182-277 (360)
403 TIGR02825 B4_12hDH leukotriene 65.3 64 0.0014 27.4 9.3 98 29-145 136-236 (325)
404 PRK05808 3-hydroxybutyryl-CoA 64.7 53 0.0012 27.5 8.5 93 34-143 5-115 (282)
405 cd08261 Zn_ADH7 Alcohol dehydr 64.6 49 0.0011 28.2 8.5 98 29-145 157-257 (337)
406 cd08300 alcohol_DH_class_III c 64.6 49 0.0011 28.8 8.6 100 29-145 184-287 (368)
407 TIGR00936 ahcY adenosylhomocys 64.4 23 0.0005 31.8 6.4 87 30-145 193-281 (406)
408 PRK05867 short chain dehydroge 64.2 51 0.0011 26.8 8.2 82 31-115 8-96 (253)
409 cd08293 PTGR2 Prostaglandin re 64.1 49 0.0011 28.3 8.4 94 33-145 156-253 (345)
410 PF05050 Methyltransf_21: Meth 63.8 14 0.0003 27.8 4.4 37 37-73 1-42 (167)
411 PRK07533 enoyl-(acyl carrier p 63.7 81 0.0018 25.8 11.5 111 31-145 9-147 (258)
412 PF10237 N6-adenineMlase: Prob 63.5 68 0.0015 24.8 9.5 100 29-147 23-124 (162)
413 PRK08762 molybdopterin biosynt 63.5 1.1E+02 0.0023 27.1 11.0 33 31-63 134-168 (376)
414 PRK07066 3-hydroxybutyryl-CoA 63.1 13 0.00027 32.3 4.4 95 33-143 8-116 (321)
415 TIGR00006 S-adenosyl-methyltra 63.0 14 0.00031 31.7 4.6 35 122-156 216-252 (305)
416 COG0604 Qor NADPH:quinone redu 62.9 46 0.001 28.8 7.9 97 29-145 140-240 (326)
417 PRK09260 3-hydroxybutyryl-CoA 62.9 23 0.00051 29.9 6.0 96 34-145 3-116 (288)
418 PRK09242 tropinone reductase; 62.5 71 0.0015 25.9 8.8 83 31-114 8-97 (257)
419 PRK06125 short chain dehydroge 61.8 68 0.0015 26.1 8.6 81 31-114 6-90 (259)
420 PRK12939 short chain dehydroge 61.4 84 0.0018 25.2 9.2 80 31-114 6-93 (250)
421 PF02086 MethyltransfD12: D12 61.2 15 0.00032 30.3 4.5 44 31-75 20-63 (260)
422 cd08295 double_bond_reductase_ 61.0 79 0.0017 27.0 9.1 99 29-145 149-250 (338)
423 PRK07502 cyclohexadienyl dehyd 60.5 63 0.0014 27.5 8.3 90 33-145 7-99 (307)
424 cd08255 2-desacetyl-2-hydroxye 60.4 39 0.00084 27.8 6.9 93 29-145 95-189 (277)
425 PLN02494 adenosylhomocysteinas 60.2 15 0.00032 33.7 4.4 88 31-147 253-342 (477)
426 PRK06197 short chain dehydroge 60.0 79 0.0017 26.6 8.9 83 31-115 15-105 (306)
427 PRK08223 hypothetical protein; 59.6 49 0.0011 28.2 7.3 77 31-111 26-123 (287)
428 TIGR02819 fdhA_non_GSH formald 59.4 29 0.00062 30.9 6.2 108 29-145 183-298 (393)
429 cd08240 6_hydroxyhexanoate_dh_ 59.4 78 0.0017 27.1 8.9 96 31-145 175-273 (350)
430 cd08277 liver_alcohol_DH_like 59.3 65 0.0014 28.0 8.4 100 29-145 182-285 (365)
431 PRK09422 ethanol-active dehydr 59.2 80 0.0017 26.8 8.8 98 29-145 160-260 (338)
432 COG1250 FadB 3-hydroxyacyl-CoA 59.0 31 0.00068 29.7 6.0 104 33-145 4-117 (307)
433 PRK05876 short chain dehydroge 59.0 82 0.0018 26.2 8.7 81 31-115 5-93 (275)
434 cd00650 LDH_MDH_like NAD-depen 59.0 90 0.002 25.9 8.8 88 55-151 27-124 (263)
435 PRK08251 short chain dehydroge 58.9 86 0.0019 25.2 8.6 81 32-114 2-90 (248)
436 PF01795 Methyltransf_5: MraW 58.8 13 0.00029 32.0 3.7 36 122-157 217-254 (310)
437 PRK07097 gluconate 5-dehydroge 58.7 79 0.0017 25.9 8.5 82 31-115 9-97 (265)
438 PRK07890 short chain dehydroge 58.6 74 0.0016 25.8 8.2 80 31-114 4-91 (258)
439 TIGR02441 fa_ox_alpha_mit fatt 58.3 12 0.00026 36.4 3.7 96 33-145 336-449 (737)
440 PRK08293 3-hydroxybutyryl-CoA 58.0 75 0.0016 26.8 8.3 94 33-142 4-116 (287)
441 PRK00050 16S rRNA m(4)C1402 me 57.7 20 0.00043 30.7 4.7 34 122-155 212-247 (296)
442 TIGR00518 alaDH alanine dehydr 57.3 25 0.00055 31.1 5.4 98 31-145 166-266 (370)
443 cd08278 benzyl_alcohol_DH Benz 57.0 98 0.0021 26.9 9.1 98 29-145 184-284 (365)
444 TIGR02355 moeB molybdopterin s 56.8 1.1E+02 0.0024 25.2 9.0 35 31-65 23-59 (240)
445 PRK08217 fabG 3-ketoacyl-(acyl 56.7 50 0.0011 26.6 6.9 81 31-114 4-91 (253)
446 cd08294 leukotriene_B4_DH_like 56.6 90 0.0019 26.3 8.7 97 29-145 141-240 (329)
447 PRK06940 short chain dehydroge 56.1 65 0.0014 26.7 7.6 59 55-115 25-86 (275)
448 cd08236 sugar_DH NAD(P)-depend 56.1 42 0.0009 28.7 6.6 98 29-145 157-257 (343)
449 PRK07035 short chain dehydroge 55.6 1E+02 0.0022 24.9 8.6 81 31-114 7-94 (252)
450 PRK06172 short chain dehydroge 55.6 95 0.0021 25.1 8.4 80 31-114 6-93 (253)
451 PF00106 adh_short: short chai 55.4 54 0.0012 24.5 6.5 79 34-115 2-90 (167)
452 KOG0022 Alcohol dehydrogenase, 55.4 26 0.00056 30.4 4.8 44 30-73 191-236 (375)
453 PRK07024 short chain dehydroge 55.1 77 0.0017 25.8 7.8 78 33-115 3-88 (257)
454 PRK07677 short chain dehydroge 55.0 82 0.0018 25.5 7.9 78 33-113 2-86 (252)
455 COG0287 TyrA Prephenate dehydr 55.0 1.3E+02 0.0029 25.5 9.5 105 33-159 4-111 (279)
456 PRK06194 hypothetical protein; 54.8 98 0.0021 25.6 8.5 80 32-115 6-93 (287)
457 cd08242 MDR_like Medium chain 54.8 67 0.0015 27.1 7.6 90 29-145 153-244 (319)
458 PRK06124 gluconate 5-dehydroge 54.6 1.1E+02 0.0023 24.8 8.6 80 31-114 10-97 (256)
459 PRK00115 hemE uroporphyrinogen 54.5 1.2E+02 0.0025 26.4 9.1 105 10-145 212-321 (346)
460 PLN02545 3-hydroxybutyryl-CoA 54.4 1.1E+02 0.0025 25.7 8.9 95 33-143 5-116 (295)
461 PRK07530 3-hydroxybutyryl-CoA 54.2 1.3E+02 0.0028 25.3 9.2 94 33-143 5-116 (292)
462 PLN02780 ketoreductase/ oxidor 54.2 72 0.0016 27.4 7.7 60 32-92 53-115 (320)
463 PRK07576 short chain dehydroge 53.9 1.2E+02 0.0027 24.8 9.5 79 31-113 8-94 (264)
464 PRK09072 short chain dehydroge 53.9 1.2E+02 0.0026 24.7 10.0 80 31-115 4-90 (263)
465 cd08233 butanediol_DH_like (2R 53.8 1.1E+02 0.0023 26.3 8.8 98 29-145 170-271 (351)
466 TIGR02437 FadB fatty oxidation 53.7 15 0.00032 35.6 3.6 98 33-144 314-426 (714)
467 KOG2918 Carboxymethyl transfer 53.7 1.5E+02 0.0032 25.7 14.1 29 217-245 255-283 (335)
468 PRK07478 short chain dehydroge 53.6 1.1E+02 0.0025 24.6 8.6 81 32-115 6-93 (254)
469 PRK07411 hypothetical protein; 53.4 1.4E+02 0.0031 26.5 9.6 79 31-113 37-136 (390)
470 PRK05600 thiamine biosynthesis 53.1 1.5E+02 0.0033 26.2 9.6 33 31-63 40-74 (370)
471 cd03309 CmuC_like CmuC_like. P 53.0 1.3E+02 0.0028 26.0 9.0 107 11-145 187-299 (321)
472 PRK08340 glucose-1-dehydrogena 52.6 94 0.002 25.3 7.9 77 34-114 2-85 (259)
473 COG1086 Predicted nucleoside-d 52.5 1.4E+02 0.003 28.1 9.3 85 32-118 250-338 (588)
474 PLN02514 cinnamyl-alcohol dehy 52.4 99 0.0021 26.8 8.4 95 30-145 179-274 (357)
475 KOG2013 SMT3/SUMO-activating c 52.3 21 0.00046 32.6 4.0 78 31-111 11-109 (603)
476 PRK05866 short chain dehydroge 52.1 1.2E+02 0.0026 25.5 8.6 79 32-114 40-126 (293)
477 PF02153 PDH: Prephenate dehyd 52.0 67 0.0014 26.7 6.9 89 47-159 3-92 (258)
478 PRK06484 short chain dehydroge 51.9 1.8E+02 0.0039 26.6 10.4 108 32-145 269-399 (520)
479 PF01555 N6_N4_Mtase: DNA meth 51.5 13 0.00028 29.6 2.5 27 123-149 33-59 (231)
480 PRK08213 gluconate 5-dehydroge 51.3 1.3E+02 0.0028 24.4 8.8 80 31-114 11-98 (259)
481 PRK08589 short chain dehydroge 51.3 1.2E+02 0.0025 25.0 8.4 81 31-115 5-92 (272)
482 PRK11064 wecC UDP-N-acetyl-D-m 51.1 1.7E+02 0.0037 26.3 9.8 36 33-69 4-41 (415)
483 PF01210 NAD_Gly3P_dh_N: NAD-d 51.0 48 0.001 25.1 5.5 95 34-145 1-102 (157)
484 PF08351 DUF1726: Domain of un 50.9 20 0.00043 24.9 3.0 43 103-152 9-51 (92)
485 PF07101 DUF1363: Protein of u 50.9 6.6 0.00014 27.3 0.5 15 35-49 6-20 (124)
486 PRK08862 short chain dehydroge 50.8 1.1E+02 0.0023 24.7 7.8 80 31-113 4-91 (227)
487 cd05285 sorbitol_DH Sorbitol d 50.6 97 0.0021 26.5 8.0 98 29-145 160-264 (343)
488 cd03308 CmuA_CmuC_like CmuA_Cm 50.6 1.7E+02 0.0036 26.0 9.5 105 11-144 244-353 (378)
489 PRK07109 short chain dehydroge 50.4 1.7E+02 0.0036 25.3 10.9 80 31-114 7-94 (334)
490 PRK07904 short chain dehydroge 50.4 1.3E+02 0.0029 24.5 8.4 82 31-115 7-97 (253)
491 cd08296 CAD_like Cinnamyl alco 50.0 1.4E+02 0.003 25.4 8.9 97 29-145 161-258 (333)
492 PRK07814 short chain dehydroge 49.7 1.1E+02 0.0025 24.9 8.0 80 31-114 9-96 (263)
493 PRK06484 short chain dehydroge 49.3 2.1E+02 0.0045 26.2 10.3 79 31-115 4-89 (520)
494 PRK07454 short chain dehydroge 49.1 1.4E+02 0.003 23.9 8.7 80 32-115 6-93 (241)
495 PF07279 DUF1442: Protein of u 49.0 1.5E+02 0.0032 24.2 10.5 60 31-90 41-105 (218)
496 PLN02178 cinnamyl-alcohol dehy 48.7 1.1E+02 0.0025 26.8 8.2 94 30-145 177-272 (375)
497 PRK05690 molybdopterin biosynt 48.7 1.5E+02 0.0033 24.4 9.3 34 31-64 31-66 (245)
498 PRK07791 short chain dehydroge 48.5 1.3E+02 0.0029 25.1 8.3 82 31-115 5-102 (286)
499 PRK07102 short chain dehydroge 48.4 1.2E+02 0.0027 24.2 7.9 78 33-113 2-84 (243)
500 PRK06196 oxidoreductase; Provi 48.2 1.2E+02 0.0026 25.7 8.1 77 31-115 25-109 (315)
No 1
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=100.00 E-value=7.9e-47 Score=323.24 Aligned_cols=230 Identities=39% Similarity=0.719 Sum_probs=184.1
Q ss_pred CCcccchh-hhhHhHHHHHHHHHhcC------CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh--
Q 025775 6 IPRSELTH-HRLYEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-- 76 (248)
Q Consensus 6 ~~r~~~~~-~~~~~~~~~~li~~~~~------~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~-- 76 (248)
|..|.+.. +.++||||+.||+.+++ ++.+|||||||.|+++.+|...+++.++|+||+..+|++|++|+..
T Consensus 30 R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~ 109 (331)
T PF03291_consen 30 RQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLK 109 (331)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHH
T ss_pred hhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhc
Confidence 33444444 55889999999999998 8999999999999999999999999999999999999999999932
Q ss_pred -------cCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 77 -------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 77 -------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
....+.+.|+.+|+....+...+.....+||+|+|++++||+|++.+.++.+++++.+.|+|||+|++|+||+
T Consensus 110 ~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 110 KRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 1123568999999988776555543346999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHH
Q 025775 150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLARE 229 (248)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~ 229 (248)
+.|.+++++.... .....|||+ +|+|+|+.+ +..|.||.+|.|+|++.+++++||||+++.|+++|++
T Consensus 190 ~~i~~~l~~~~~~-------~~~~~~gN~----~y~I~f~~~-~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~e 257 (331)
T PF03291_consen 190 DEIVKRLREKKSN-------SEKKKFGNS----VYSIEFDSD-DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKE 257 (331)
T ss_dssp HHHHCCHHC-EEE-------CCCSCSETS----SEEEEESCC-SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHH
T ss_pred HHHHHHHHhhccc-------ccccccCCc----cEEEEeccc-CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHH
Confidence 9998888752110 011356664 699999876 5788999999999999999999999999999999999
Q ss_pred cCcEEEEecCchHHHhhc
Q 025775 230 AGLEYVEIQNLNEFYDDN 247 (248)
Q Consensus 230 ~G~~~v~~~~f~~~~~~~ 247 (248)
+||++|+..+|.+||+++
T Consensus 258 yGLeLV~~~~F~ef~~e~ 275 (331)
T PF03291_consen 258 YGLELVEKKNFHEFYEEE 275 (331)
T ss_dssp TTEEEEEEEEHHHHHHHH
T ss_pred cCCEEEEeCChHHHHHHh
Confidence 999999999999999964
No 2
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=100.00 E-value=9.3e-47 Score=310.00 Aligned_cols=226 Identities=36% Similarity=0.600 Sum_probs=196.9
Q ss_pred CCcccchh-hhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-----C
Q 025775 6 IPRSELTH-HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----K 79 (248)
Q Consensus 6 ~~r~~~~~-~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-----~ 79 (248)
|++|.+-+ +.+|||||+.||+.+.+++..++|||||.|+++.+|-.++++.++|+||+..+|++|+.|++... .
T Consensus 91 Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~ 170 (389)
T KOG1975|consen 91 RQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKF 170 (389)
T ss_pred hccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcc
Confidence 44455544 55899999999999999999999999999999999999999999999999999999999997632 2
Q ss_pred CceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHh
Q 025775 80 NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (248)
Q Consensus 80 ~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~ 159 (248)
.+.+.|+.+|++...+...++.++.+||+|+|+|++||+|++.+.++.++.|+.++|+|||+||+|+||++.|+.++++.
T Consensus 171 ~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 171 IFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred cceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 34589999999987776665545556999999999999999999999999999999999999999999999999999863
Q ss_pred HhhhhCCCCCCCCCCCCCcccCceeEEEecccC---CCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEE
Q 025775 160 VEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE 236 (248)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~ 236 (248)
. ...|||+ +|+|+|+.+. ...|+||.+|.|+|++.+. ||||+|+++.|+.++++.||+||.
T Consensus 251 ------e-----~~~~gNd----iykv~y~~~~~k~~~~p~fG~kY~F~LedaVd-cPEylV~F~~l~~lae~y~LeLv~ 314 (389)
T KOG1975|consen 251 ------E-----VERFGND----IYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVD-CPEYLVPFPTLVSLAEEYGLELVF 314 (389)
T ss_pred ------c-----chhhcce----eeeEeeeeecccccCCCCccceEEEEcccccC-CcceeeehHHHHHHHHhcCcEEEE
Confidence 0 1368886 5888876432 1279999999999999875 999999999999999999999999
Q ss_pred ecCchHHHhhc
Q 025775 237 IQNLNEFYDDN 247 (248)
Q Consensus 237 ~~~f~~~~~~~ 247 (248)
.++|.+||++.
T Consensus 315 ~k~F~df~~e~ 325 (389)
T KOG1975|consen 315 VKPFADFYEEE 325 (389)
T ss_pred eccHHHHHHHh
Confidence 99999999875
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.90 E-value=2.7e-23 Score=170.65 Aligned_cols=175 Identities=25% Similarity=0.346 Sum_probs=85.2
Q ss_pred HHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775 23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM 99 (248)
Q Consensus 23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (248)
.+++.. ..++.+|||+|||||..+..++.. +.++|+|+|+|+.|++.|+++....+.. +++++++|+.+.++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~---- 112 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF---- 112 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S----
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC----
Confidence 444443 457899999999999988888765 3359999999999999999998765432 69999999988887
Q ss_pred cccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHH---HhHhhhhCCCCCCCCC
Q 025775 100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQ---KNVEAYHNRSSSMKPN 173 (248)
Q Consensus 100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 173 (248)
++++||+|+|.+++|.+ ++...++++++++|||||.+++. .|....+...+. +.+.|+.
T Consensus 113 --~d~sfD~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~--------- 177 (233)
T PF01209_consen 113 --PDNSFDAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLI--------- 177 (233)
T ss_dssp ---TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------
T ss_pred --CCCceeEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccc---------
Confidence 57999999999999973 24778999999999999999877 444333322221 1111110
Q ss_pred CCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCc
Q 025775 174 LVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (248)
Q Consensus 174 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f 240 (248)
|. + +..-...|.| |.+++. .+++.+.+.++++++||+.+...++
T Consensus 178 --g~--------l--------~~~~~~~Y~y-L~~Si~----~f~~~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 178 --GR--------L--------LSGDREAYRY-LPESIR----RFPSPEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp -------------------------------------------------------------------
T ss_pred --cc--------c--------cccccccccc-cccccc----ccccccccccccccccccccccccc
Confidence 00 0 0000123554 666653 3678999999999999998876654
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.89 E-value=6.2e-23 Score=167.21 Aligned_cols=176 Identities=24% Similarity=0.331 Sum_probs=129.6
Q ss_pred HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 025775 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (248)
Q Consensus 21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (248)
+..++... ..+|.+|||+|||||..+..++.. +.++++|+|+|+.||+.|+++....+... ++|+++|+.+.++
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf--- 115 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF--- 115 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC---
Confidence 44555554 447999999999999999999876 55699999999999999999998765433 9999999999888
Q ss_pred hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHHHh----HhhhhCCCCCCC
Q 025775 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN----VEAYHNRSSSMK 171 (248)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 171 (248)
++++||+|++.++++++ .+.+.+|+++.|+|||||.+++. .|....+...+..- +.|.
T Consensus 116 ---~D~sFD~vt~~fglrnv----~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~-------- 180 (238)
T COG2226 116 ---PDNSFDAVTISFGLRNV----TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPL-------- 180 (238)
T ss_pred ---CCCccCEEEeeehhhcC----CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhh--------
Confidence 68999999999999983 36899999999999999998887 33333343333321 2221
Q ss_pred CCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecC
Q 025775 172 PNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239 (248)
Q Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~ 239 (248)
+|.- +.. -...|.| |.+++ +-+.+.+.|.+++++.||+.+...+
T Consensus 181 ---~g~~-------~~~---------~~~~y~y-L~eSi----~~~p~~~~l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 181 ---IGKL-------VAK---------DAEAYEY-LAESI----RRFPDQEELKQMIEKAGFEEVRYEN 224 (238)
T ss_pred ---hcee-------eec---------ChHHHHH-HHHHH----HhCCCHHHHHHHHHhcCceEEeeEe
Confidence 1110 000 0112333 55554 3467899999999999999887443
No 5
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.83 E-value=7.4e-20 Score=156.64 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=113.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||||||+|..+..++..+. +|+|+|+++.|++.|+.+........++.++++|+.+.++ .+++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence 567999999999999888876554 8999999999999999876543322358899998755433 357899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecc
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV 190 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 190 (248)
|..+++++- +...+++++.++|||||.+++++++..... +...+ .+. .|...+
T Consensus 204 ~~~vLeHv~----d~~~~L~~l~r~LkPGG~liist~nr~~~~--~~~~i--------------~~~-----eyi~~~-- 256 (322)
T PLN02396 204 SLEVIEHVA----NPAEFCKSLSALTIPNGATVLSTINRTMRA--YASTI--------------VGA-----EYILRW-- 256 (322)
T ss_pred EhhHHHhcC----CHHHHHHHHHHHcCCCcEEEEEECCcCHHH--HHHhh--------------hhH-----HHHHhc--
Confidence 999998832 356899999999999999999988864321 10000 000 000000
Q ss_pred cCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCch
Q 025775 191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (248)
Q Consensus 191 ~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~ 241 (248)
.+. | ......+++++++.++++++||++++...+.
T Consensus 257 ----lp~-g-----------th~~~~f~tp~eL~~lL~~aGf~i~~~~G~~ 291 (322)
T PLN02396 257 ----LPK-G-----------THQWSSFVTPEELSMILQRASVDVKEMAGFV 291 (322)
T ss_pred ----CCC-C-----------CcCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence 000 1 1111236799999999999999999887653
No 6
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.81 E-value=4.1e-19 Score=142.92 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=124.4
Q ss_pred HHHHHHHhcC-CCCeEEEEcCCCCccHhHHHHc-C------CCeEEEEeCChHHHHHHHHHHHhcCCCc--eEEEEEcCC
Q 025775 21 KTALIKIYSH-PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRKNF--IAEFFEADP 90 (248)
Q Consensus 21 ~~~li~~~~~-~~~~VLDlGcG~G~~~~~l~~~-~------~~~v~giDis~~~l~~a~~~~~~~~~~~--~~~~~~~d~ 90 (248)
|..++...-+ ++.+|||+|||||..+..+... + .++|+.+|||++||+.+++|....+... .+.++++|+
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 4444444433 6789999999999999888765 2 2589999999999999999986544322 388999999
Q ss_pred CCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh-h--HHHHHHHHhHhhhhCCC
Q 025775 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-S--TIWAKYQKNVEAYHNRS 167 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~--~~~~~~~~~~~~~~~~~ 167 (248)
.+.++ ++.+||..++.+++.++ .++++.+++++|+|||||+|.+.-.+. + .+...+.+
T Consensus 169 E~LpF------dd~s~D~yTiafGIRN~----th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~--------- 229 (296)
T KOG1540|consen 169 EDLPF------DDDSFDAYTIAFGIRNV----THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ--------- 229 (296)
T ss_pred ccCCC------CCCcceeEEEecceecC----CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh---------
Confidence 99888 58899999999988873 348899999999999999999873333 2 33333321
Q ss_pred CCCCCCCCCCcccCceeEEEecccCCCCCccee-------eeEEEEccCccCCCcceechHHHHHHHHHcCcEEEE
Q 025775 168 SSMKPNLVPNCIRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE 236 (248)
Q Consensus 168 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~-------~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~ 236 (248)
|+. +.+|..|. .|.| |.+++. -+.+.++|..+++++||..+.
T Consensus 230 ----------------ysf------~VlpvlG~~iagd~~sYqY-LveSI~----rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 230 ----------------YSF------DVLPVLGEIIAGDRKSYQY-LVESIR----RFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred ----------------hhh------hhhchhhHhhhhhHhhhhh-HHhhhh----cCCCHHHHHHHHHHcCCcccc
Confidence 111 12333332 3444 555553 356889999999999999886
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.81 E-value=2.5e-20 Score=149.69 Aligned_cols=179 Identities=19% Similarity=0.266 Sum_probs=124.5
Q ss_pred cchhhhhH----hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEE
Q 025775 10 ELTHHRLY----EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEF 85 (248)
Q Consensus 10 ~~~~~~~~----~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~ 85 (248)
..|.+++| +|++...-..+--++.+|||+|||-|.++..+++.+. .|+|+|+++.+|+.|+.+....+. .+++
T Consensus 34 f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv--~i~y 110 (243)
T COG2227 34 FKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV--NIDY 110 (243)
T ss_pred eeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc--cccc
Confidence 34444444 3444444333334899999999999999999998885 999999999999999998877662 2446
Q ss_pred EEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhC
Q 025775 86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN 165 (248)
Q Consensus 86 ~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
.+..+.+ +. ...++||+|+|..+++| .++...++.++.+++||||+++++++|.......+. .+
T Consensus 111 ~~~~~ed--l~----~~~~~FDvV~cmEVlEH----v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~-i~----- 174 (243)
T COG2227 111 RQATVED--LA----SAGGQFDVVTCMEVLEH----VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA-II----- 174 (243)
T ss_pred hhhhHHH--HH----hcCCCccEEEEhhHHHc----cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHH-HH-----
Confidence 5555422 21 12479999999998877 444677999999999999999999999644332221 11
Q ss_pred CCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCc
Q 025775 166 RSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (248)
Q Consensus 166 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f 240 (248)
+.+|...+-...++....++.++++...+...|+++....++
T Consensus 175 ---------------------------------~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 175 ---------------------------------GAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred ---------------------------------HHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 111111111122334456788999999999899998877663
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.80 E-value=5.3e-19 Score=129.14 Aligned_cols=108 Identities=27% Similarity=0.349 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC-CCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~fD~ 108 (248)
|+.+|||||||+|..+..+++. +..+++|+|+|+.|++.|+++....+...++.++++|+ .... ...+||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------FLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------TSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------cCCCCCE
Confidence 6889999999999999999883 55599999999999999999985555556799999998 2222 2567999
Q ss_pred EEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 109 V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|++.. .++.++. .+....+++++.+.|+|||++++..
T Consensus 74 v~~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLP-LDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCH-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccc-hhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99998 5664333 3778999999999999999999875
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.80 E-value=1.9e-18 Score=144.81 Aligned_cols=110 Identities=19% Similarity=0.151 Sum_probs=88.3
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHh--cCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
..++.+|||+|||+|..+..++.. + .++++|+|+|++|++.|+++... .....++.++++|+.+.++ +++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------~~~ 144 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------DDC 144 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------CCC
Confidence 347889999999999988777664 3 35899999999999999877542 1112348899999987766 467
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
+||+|++.+++|++ ++...+++++.++|||||.+++....
T Consensus 145 sfD~V~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 145 YFDAITMGYGLRNV----VDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred CEeEEEEecccccC----CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99999999999873 24778999999999999999888443
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=1.3e-18 Score=145.42 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=94.4
Q ss_pred HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (248)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 103 (248)
+++....++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++....+...++.++++|+.+... . .+
T Consensus 37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~--~---~~ 110 (255)
T PRK11036 37 LLAELPPRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ--H---LE 110 (255)
T ss_pred HHHhcCCCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh--h---cC
Confidence 4444445678999999999999999988764 8999999999999999988765544458899998855321 1 35
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 151 (248)
++||+|+|..++|++ ++...+++++.++|||||++++.+.+...
T Consensus 111 ~~fD~V~~~~vl~~~----~~~~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 111 TPVDLILFHAVLEWV----ADPKSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred CCCCEEEehhHHHhh----CCHHHHHHHHHHHcCCCeEEEEEEECccH
Confidence 789999999999873 23567899999999999999998877654
No 11
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=6.5e-18 Score=140.27 Aligned_cols=160 Identities=21% Similarity=0.273 Sum_probs=125.8
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+.||.+|||||||+|.++..++..-..+|+|+++|+++.+.+++++...+...++++.-.|..+ + .++||.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--~-------~e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--F-------EEPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--c-------ccccce
Confidence 5699999999999999999998875459999999999999999999888766678888888744 2 456999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEe
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 188 (248)
|++..+++| ...+....+++.+.++|+|||.+++.+.....-. +.
T Consensus 141 IvSvgmfEh--vg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~------------------------------~~--- 185 (283)
T COG2230 141 IVSVGMFEH--VGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE------------------------------FR--- 185 (283)
T ss_pred eeehhhHHH--hCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc------------------------------cc---
Confidence 999999988 5677799999999999999999988743321000 00
Q ss_pred cccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHh
Q 025775 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245 (248)
Q Consensus 189 ~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~ 245 (248)
..+.|-.+|.| +..++.+.+.+.+.++++||.+.....|..-|.
T Consensus 186 -----~~~~~i~~yiF--------PgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa 229 (283)
T COG2230 186 -----RFPDFIDKYIF--------PGGELPSISEILELASEAGFVVLDVESLRPHYA 229 (283)
T ss_pred -----cchHHHHHhCC--------CCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHH
Confidence 12345556666 223577888999999999999998888877664
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.78 E-value=1.2e-17 Score=140.09 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=89.5
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... .++.+.++|+...++ ++++||+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i~~~~~D~~~~~~------~~~~FD~ 120 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKDF------PENTFDM 120 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---CceEEEECCcccCCC------CCCCeEE
Confidence 5688999999999999888886653349999999999999999876542 348899999876655 4679999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|++..++++ .+.++...+++++.++|||||.++++.+
T Consensus 121 V~s~~~l~h--~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 121 IYSRDAILH--LSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEhhhHHh--CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999887766 3556788999999999999999998744
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.78 E-value=2.5e-17 Score=142.96 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=90.9
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....+...++.++++|+.+.++ .+++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------EDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------CCCCccEE
Confidence 467899999999999998887764449999999999999999887765544568999999987666 46899999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
++..++|++ .+...+++++.++|||||.+++...
T Consensus 191 ~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 191 WSMESGEHM----PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999988873 3467899999999999999998754
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.76 E-value=4.3e-18 Score=120.09 Aligned_cols=95 Identities=26% Similarity=0.351 Sum_probs=81.8
Q ss_pred EEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccch
Q 025775 36 CDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL 115 (248)
Q Consensus 36 LDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l 115 (248)
||+|||+|..+..++..+..+++|+|+++.+++.++++....+ +.+.++|+.+.++ ++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~------~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPF------PDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-------TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcc------ccccccccccccce
Confidence 8999999999999988856699999999999999999876654 6699999988877 57899999999999
Q ss_pred hhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775 116 QMCFETEERARRLLQNVSSLLKPGGYFLG 144 (248)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 144 (248)
|++ ++...+++++.++|||||.+++
T Consensus 71 ~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 984 6789999999999999999985
No 15
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.74 E-value=3.2e-17 Score=127.02 Aligned_cols=100 Identities=26% Similarity=0.417 Sum_probs=79.4
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..++.+|||+|||+|.++..+...+. +++|+|+++.+++. .. ......+...... .+++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~~----~~~~~~~~~~~~~------~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------RN----VVFDNFDAQDPPF------PDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------TT----SEEEEEECHTHHC------HSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------hh----hhhhhhhhhhhhc------cccchhh
Confidence 46789999999999999999977777 99999999999987 11 2222222212122 4689999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 150 (248)
|+|..++|++- +...+++++.++|||||++++++++..
T Consensus 82 i~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 82 IICNDVLEHLP----DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEESSGGGSS----HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhHHHHhhcc----cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999832 588999999999999999999988863
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=4.8e-17 Score=135.33 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=91.7
Q ss_pred HHHHhcCCCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (248)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (248)
++....+++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+...++.++++|+.+.++
T Consensus 49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----- 123 (247)
T PRK15451 49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----- 123 (247)
T ss_pred HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----
Confidence 34455678899999999999988777652 3459999999999999999998765544468999999865433
Q ss_pred ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
..+|+|++.+++|+ .+.+....+++++.+.|+|||.|+++
T Consensus 124 ---~~~D~vv~~~~l~~--l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 ---ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred ---CCCCEEehhhHHHh--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 35899999999997 44666789999999999999999987
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=1.1e-17 Score=137.87 Aligned_cols=118 Identities=18% Similarity=0.228 Sum_probs=91.4
Q ss_pred hHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 025775 18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94 (248)
Q Consensus 18 ~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (248)
.|.+ .+++.. ..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .++.++++|+...+
T Consensus 32 ~~~~-~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 32 KWRK-DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP 109 (231)
T ss_pred HHHH-HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC
Confidence 4443 333433 457889999999999998888765 235899999999999999988765432 35889999987655
Q ss_pred hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
+ .+++||+|++.+++|+. ++...+++++.++|+|||.+++..+
T Consensus 110 ~------~~~~fD~V~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 110 F------DDNSFDYVTIGFGLRNV----PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred C------CCCCccEEEEecccccC----CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4 36789999999888762 2356889999999999999988743
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.73 E-value=9.1e-18 Score=135.96 Aligned_cols=169 Identities=17% Similarity=0.223 Sum_probs=119.3
Q ss_pred hHHHHHHHHHh--cCCC------CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-----CCceEE
Q 025775 18 EFAKTALIKIY--SHPY------VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----KNFIAE 84 (248)
Q Consensus 18 ~~~~~~li~~~--~~~~------~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-----~~~~~~ 84 (248)
.|+..-+.... ..|+ .+|||+|||+|-++..+++.+. +|+|+|+++.|++.|+.+..... ..++++
T Consensus 68 ~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~ 146 (282)
T KOG1270|consen 68 PFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE 146 (282)
T ss_pred hHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeee
Confidence 45555555555 2344 7899999999999999988886 99999999999999998743322 223456
Q ss_pred EEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhh
Q 025775 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH 164 (248)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~ 164 (248)
+.+.|+.. ..+.||+|+|..+++| ..+..+++..+.+.|||||.+++++.+..-+...
T Consensus 147 ~~~~~~E~---------~~~~fDaVvcsevleH----V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~--------- 204 (282)
T KOG1270|consen 147 YEDTDVEG---------LTGKFDAVVCSEVLEH----VKDPQEFLNCLSALLKPNGRLFITTINRTILSFA--------- 204 (282)
T ss_pred hhhcchhh---------cccccceeeeHHHHHH----HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhh---------
Confidence 66666533 2456999999998887 5668899999999999999999998886544211
Q ss_pred CCCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecC
Q 025775 165 NRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239 (248)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~ 239 (248)
++-+ ..+|.-.+....++..|.+++++.+..++++.|+.+....+
T Consensus 205 -----------~~i~-------------------~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 205 -----------GTIF-------------------LAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVG 249 (282)
T ss_pred -----------cccc-------------------HHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence 1100 00010011112334566789999999999999888765544
No 19
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=2.1e-16 Score=132.67 Aligned_cols=163 Identities=21% Similarity=0.223 Sum_probs=109.8
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
++||.+|||||||.|+.+..++.. +. +|+|+.+|++..+.++++....+...++.+..+|..+ + +.+||
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~-------~~~fD 129 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--L-------PGKFD 129 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-S
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--c-------CCCCC
Confidence 569999999999999999999888 55 9999999999999999999888776778999988643 2 45999
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT 187 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 187 (248)
.|++..++.+ ...+....+++++.+.|+|||.+++.......-...... .
T Consensus 130 ~IvSi~~~Eh--vg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~--------~-------------------- 179 (273)
T PF02353_consen 130 RIVSIEMFEH--VGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAER--------R-------------------- 179 (273)
T ss_dssp EEEEESEGGG--TCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCT--------T--------------------
T ss_pred EEEEEechhh--cChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhc--------C--------------------
Confidence 9999988776 345678899999999999999998773333211111000 0
Q ss_pred ecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHh
Q 025775 188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245 (248)
Q Consensus 188 ~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~ 245 (248)
.-..|-.+|.| +..++++.+.+...+++.||++....++..-|.
T Consensus 180 ------~~~~~i~kyiF--------Pgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~ 223 (273)
T PF02353_consen 180 ------SSSDFIRKYIF--------PGGYLPSLSEILRAAEDAGLEVEDVENLGRHYA 223 (273)
T ss_dssp ------CCCHHHHHHTS--------TTS---BHHHHHHHHHHTT-EEEEEEE-HHHHH
T ss_pred ------CCceEEEEeeC--------CCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHH
Confidence 00012223333 122567888999999999999998888776664
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=2.8e-16 Score=135.28 Aligned_cols=105 Identities=19% Similarity=0.098 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||||||+|.++..++..+...|+|+|+|+.++.+++......+...++.++.+|+.+.++ +++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEE
Confidence 67899999999999999998887778999999999998765433221112348899998865443 56899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|..++||. .+...+++++++.|+|||.+++..
T Consensus 195 s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYHR----RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhcc----CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99988873 346789999999999999999873
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.71 E-value=1.4e-16 Score=122.96 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=92.0
Q ss_pred CCCeEEEEcCCCCccHhHHHH-c-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~-~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
++.+|||+|||+|..+..++. . +..+++|+|+|+.|++.|+.+....+.. +++|.++|+.+.+- .+ .+.||+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~~---~~~~D~ 76 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--EL---EEKFDI 76 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--CS---STTEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--cc---CCCeeE
Confidence 578999999999999999984 3 3469999999999999999988766543 69999999977331 00 278999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh-hHHHHHHH
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKYQ 157 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~~~ 157 (248)
|++..++|+ ..+...+++++.+.|++||.+++..+.. ..+.+.+.
T Consensus 77 I~~~~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~ 122 (152)
T PF13847_consen 77 IISNGVLHH----FPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLE 122 (152)
T ss_dssp EEEESTGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHH
T ss_pred EEEcCchhh----ccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHH
Confidence 999998876 3346788999999999999999997773 33333433
No 22
>PRK05785 hypothetical protein; Provisional
Probab=99.71 E-value=5.3e-17 Score=133.19 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=79.8
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..++.+|||+|||||..+..++.....+++|+|+|++|++.|+++ ..++++|+.+.++ ++++||+
T Consensus 49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~------~d~sfD~ 113 (226)
T PRK05785 49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPF------RDKSFDV 113 (226)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCC------CCCCEEE
Confidence 346789999999999988888766334899999999999998764 2357888877666 5789999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecCh
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDS 149 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~ 149 (248)
|++.+++|+ .++.+.+++++.++|||.+ ++-+..|+.
T Consensus 114 v~~~~~l~~----~~d~~~~l~e~~RvLkp~~~ile~~~p~~ 151 (226)
T PRK05785 114 VMSSFALHA----SDNIEKVIAEFTRVSRKQVGFIAMGKPDN 151 (226)
T ss_pred EEecChhhc----cCCHHHHHHHHHHHhcCceEEEEeCCCCc
Confidence 999999987 3357889999999999954 333334543
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=1.6e-16 Score=127.70 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++....+. .++.+.++|+.+.++ +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-------~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-------DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-------CCCcCEEE
Confidence 568999999999999999988765 999999999999999987766543 237788888865443 45799999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|..++|+ .+.+....+++++.++|+|||.+++.
T Consensus 101 ~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 101 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred Eecchhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999886 46778899999999999999996553
No 24
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.70 E-value=4e-16 Score=129.18 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=92.4
Q ss_pred HHHHhcCCCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (248)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (248)
+......++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+...++.++++|+.+.++
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----- 120 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----- 120 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence 44455668889999999999988888764 3458999999999999999987664433458899999866443
Q ss_pred ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
..+|+|++.+++|+ .+.++...+++++.++|+|||.+++..
T Consensus 121 ---~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 121 ---KNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ---CCCCEEeeecchhh--CCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 35899999999998 456678899999999999999999983
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.70 E-value=6.6e-16 Score=131.81 Aligned_cols=107 Identities=15% Similarity=0.005 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.++.+|||+|||+|.++..++..+...|+|+|+|+.|+.+++..-.......++.+..+++.+.+. ..+||+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V 192 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTV 192 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEE
Confidence 368899999999999888887777768999999999998754322111111246777777754332 3589999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
+|..+++|. .+...++++++++|+|||.+++.+.
T Consensus 193 ~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 193 FSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred EEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 999988873 3467799999999999999998743
No 26
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.69 E-value=9.7e-17 Score=115.22 Aligned_cols=96 Identities=27% Similarity=0.472 Sum_probs=78.0
Q ss_pred EEEEcCCCCccHhHHHHcC----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 35 VCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 35 VLDlGcG~G~~~~~l~~~~----~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
|||+|||+|..+..+.... ..+++|+|+|++|++.++++....+. +++++++|+.+.+. ..++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence 7999999999999887652 25999999999999999998866432 58999999977543 467999999
Q ss_pred eccc-hhhhcCCHHHHHHHHHHHhccccCCc
Q 025775 111 CFQH-LQMCFETEERARRLLQNVSSLLKPGG 140 (248)
Q Consensus 111 ~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG 140 (248)
|.+. ++| .+.+....+++++.++|+|||
T Consensus 73 ~~~~~~~~--~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHH--LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCC--CCHHHHHHHHHHHHHHhCCCC
Confidence 9654 887 678899999999999999998
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.69 E-value=4.6e-16 Score=124.92 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++....+. ++.+.++|+...++ +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-------NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-------cCCCCEEE
Confidence 567999999999999999988765 899999999999999887765543 36677777654333 45799999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+..++|+ .+.+....+++++.++|+|||++++.
T Consensus 100 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 100 STVVFMF--LQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred Eeccccc--CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9998886 45677889999999999999996554
No 28
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.69 E-value=2.4e-16 Score=120.88 Aligned_cols=139 Identities=20% Similarity=0.217 Sum_probs=100.6
Q ss_pred hhhhhHhHHHHHHHHHhcCCCC-eEEEEcCCCCccHhHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC
Q 025775 12 THHRLYEFAKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89 (248)
Q Consensus 12 ~~~~~~~~~~~~li~~~~~~~~-~VLDlGcG~G~~~~~l~~~~~~-~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d 89 (248)
...++.+|.+......-+.+.+ +|||||||+|+.+..++..++. .++|+|.|+.+++.|+...+..+....+.|.+.|
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D 126 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD 126 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence 3446667766544311134444 9999999999999999988764 4999999999999999988877766669999999
Q ss_pred CCCCchhhhhcccCCceeEEEecc-----chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHH
Q 025775 90 PCAENFETQMQEKANQADLVCCFQ-----HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~-----~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~ 157 (248)
+.+.++ ..++||+|.--. +++- -.....+...+..+.+.|+|||+|+++..|. +++...+.
T Consensus 127 I~~~~~------~~~qfdlvlDKGT~DAisLs~-d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 127 ITDPDF------LSGQFDLVLDKGTLDAISLSP-DGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred ccCCcc------cccceeEEeecCceeeeecCC-CCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence 998766 356676665432 2221 0122334667888999999999999997776 55555544
No 29
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.69 E-value=5.6e-16 Score=127.02 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=85.9
Q ss_pred CeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.++..|+...++ +++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEeeh
Confidence 379999999999988887663 358999999999999999988776655568999999865433 458999999
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
..++|+. .+...+++++.++|+|||.+++..+
T Consensus 74 ~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 74 FEVIHHI----KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9888873 3367899999999999999998744
No 30
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.68 E-value=4.7e-15 Score=121.22 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+|||+|..+..++..+. .++|+|+|++|++.|+++....+...++.+.++|+.+. +++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCcCEEE
Confidence 678999999999999998877655 89999999999999999887654333588999997442 36899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 144 (248)
+..++++ .+.+....++.++.+.+++++++.+
T Consensus 125 ~~~~l~~--~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIH--YPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHh--CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9888876 3556788899999999887766554
No 31
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.67 E-value=1.6e-15 Score=118.76 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=117.9
Q ss_pred HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (248)
Q Consensus 23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 102 (248)
.+|..+++|+.+|||||||.|.++..+......+..|+|++++.+..+.++ + +..+++|+.+. +.. . +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~g-L~~-f--~ 72 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEG-LAD-F--P 72 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHh-Hhh-C--C
Confidence 457778899999999999999999888776555899999999998877654 2 66899998652 211 1 5
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCc
Q 025775 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE 182 (248)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 182 (248)
+++||.|+++.++.. ....+.+++++ |+-|...++++||......++.= ...|.-..
T Consensus 73 d~sFD~VIlsqtLQ~----~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l-----~~~GrmPv----------- 129 (193)
T PF07021_consen 73 DQSFDYVILSQTLQA----VRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQL-----LLRGRMPV----------- 129 (193)
T ss_pred CCCccEEehHhHHHh----HhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHH-----HhcCCCCC-----------
Confidence 889999999998876 34466677666 45588999999998766655541 11111000
Q ss_pred eeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCch
Q 025775 183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (248)
Q Consensus 183 ~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~ 241 (248)
.+..| |.|+. .+.-.+.+..+|.++|++.|+++++...+.
T Consensus 130 ---------t~~lP-----y~WYd-----TPNih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 130 ---------TKALP-----YEWYD-----TPNIHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred ---------CCCCC-----CcccC-----CCCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 01112 55542 133468899999999999999999765543
No 32
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.67 E-value=2.4e-15 Score=119.49 Aligned_cols=130 Identities=17% Similarity=0.078 Sum_probs=97.3
Q ss_pred CCCCCcccchhhhhH-hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCC
Q 025775 3 VLPIPRSELTHHRLY-EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN 80 (248)
Q Consensus 3 ~~~~~r~~~~~~~~~-~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~ 80 (248)
++..++.+....... .++.+..+..+++++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++.+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~ 95 (187)
T PRK00107 16 KYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK 95 (187)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 344445555544333 34455666677778899999999999988877754 4469999999999999999988776643
Q ss_pred ceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 81 ~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
++.++++|+.+... .++||+|+|... .....+++.+.+.|+|||.+++....
T Consensus 96 -~i~~~~~d~~~~~~-------~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 96 -NVTVVHGRAEEFGQ-------EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred -CEEEEeccHhhCCC-------CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 38999999855321 468999998641 23577899999999999999988544
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=3.5e-15 Score=135.38 Aligned_cols=107 Identities=22% Similarity=0.242 Sum_probs=87.5
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..++.+|||||||+|..+..++.....+++|+|+|+.|++.|+++..... .++.|.++|+...++ ++++||+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~v~~~~~d~~~~~~------~~~~fD~ 335 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CSVEFEVADCTKKTY------PDNSFDV 335 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--CceEEEEcCcccCCC------CCCCEEE
Confidence 34678999999999998888876544489999999999999987765332 358899999977665 4678999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|+|..+++|. .+...+++++.++|+|||.++++.+
T Consensus 336 I~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 336 IYSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999888773 3467899999999999999998854
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.66 E-value=7.9e-16 Score=128.34 Aligned_cols=112 Identities=19% Similarity=0.301 Sum_probs=88.4
Q ss_pred HHHHHHhcC-CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775 22 TALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (248)
Q Consensus 22 ~~li~~~~~-~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (248)
..+++.... ++.+|||+|||+|..+..+...+ .+++|+|+|+.|++.|+++... ..++++|+...++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~------~~~~~~d~~~~~~----- 99 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA------DHYLAGDIESLPL----- 99 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC------CCEEEcCcccCcC-----
Confidence 344444332 56789999999999888887655 4899999999999999877432 4578899877555
Q ss_pred ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (248)
Q Consensus 101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 150 (248)
.+++||+|++..++|+. .+...++.++.++|+|||.++++++...
T Consensus 100 -~~~~fD~V~s~~~l~~~----~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 100 -ATATFDLAWSNLAVQWC----GNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred -CCCcEEEEEECchhhhc----CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 46789999999988872 3467899999999999999999976653
No 35
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.66 E-value=5.9e-15 Score=129.80 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=112.7
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+.++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++.... .+.+...|... + +++||+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~--l-------~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRD--L-------NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhh--c-------CCCCCE
Confidence 4688999999999999988887653348999999999999999887532 37777777633 1 468999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEe
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 188 (248)
|++..++++ .+......+++++.++|||||.+++.........
T Consensus 232 Ivs~~~~eh--vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~----------------------------------- 274 (383)
T PRK11705 232 IVSVGMFEH--VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD----------------------------------- 274 (383)
T ss_pred EEEeCchhh--CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC-----------------------------------
Confidence 999888877 3456678899999999999999998754322100
Q ss_pred cccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHhh
Q 025775 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246 (248)
Q Consensus 189 ~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~~ 246 (248)
.....|-.+|.|. ..++.+.+.+.+.++ .||++.+..+|...|..
T Consensus 275 ----~~~~~~i~~yifp--------~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 275 ----TNVDPWINKYIFP--------NGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR 319 (383)
T ss_pred ----CCCCCCceeeecC--------CCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence 0001222334441 124667778777766 68999988888887753
No 36
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.66 E-value=1.2e-15 Score=120.70 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.++||||||.|+++..++..+. .|+++|+|+.+++.+.+..+..+ .++...+.|+.+..+ ++.||+|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~--l~i~~~~~Dl~~~~~-------~~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG--LDIRTRVADLNDFDF-------PEEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS--------TTTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC--ceeEEEEecchhccc-------cCCcCEEE
Confidence 678999999999999999999999 89999999999999888766554 348889999877655 46899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+..++++ ...+.+..+++++.+.++|||++++.
T Consensus 100 st~v~~f--L~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMF--LQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGG--S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEecc--CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 8888876 56778899999999999999998874
No 37
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.65 E-value=2.8e-15 Score=121.05 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=91.6
Q ss_pred CCCCCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCc
Q 025775 3 VLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNF 81 (248)
Q Consensus 3 ~~~~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~ 81 (248)
+++|+|+.........++...+ ...+++.+|||+|||+|..+..+... +..+++|+|+|+.|++.|+++...
T Consensus 17 ~~~rn~~~~~~~~~~~~~~~~l--~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~----- 89 (204)
T TIGR03587 17 YIDRNSRQSLVAAKLAMFARAL--NRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN----- 89 (204)
T ss_pred hhhccccHHHHHHHHHHHHHHH--HhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC-----
Confidence 4455555444333334443332 23456789999999999999888775 456999999999999999876432
Q ss_pred eEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 82 ~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+.+.++|+.+ ++ .+++||+|++..++++ .+.+.+..+++++.+++ ++++++.
T Consensus 90 -~~~~~~d~~~-~~------~~~sfD~V~~~~vL~h--l~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 90 -INIIQGSLFD-PF------KDNFFDLVLTKGVLIH--INPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred -CcEEEeeccC-CC------CCCCEEEEEECChhhh--CCHHHHHHHHHHHHhhc--CcEEEEE
Confidence 5678888866 44 4679999999999987 35678899999999997 4566665
No 38
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.65 E-value=1.2e-15 Score=131.33 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+|||||||+|..+..++.. +..+++++|+|+.|++.|+++.... ++.++++|+.+.++ .+++||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~------~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPF------PTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCC------CCCceeE
Confidence 46789999999999988777654 3458999999999999999876433 37789999876555 3678999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|++..++|+. . +...+++++.++|+|||.+++..
T Consensus 182 VIs~~~L~~~-~---d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 182 YVSAGSIEYW-P---DPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEcChhhhC-C---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999988872 2 34578999999999999998764
No 39
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.64 E-value=3e-14 Score=121.80 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=82.9
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhcccCCc
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~ 105 (248)
++++.+|||+|||+|..+..++... ..+|+|+|+|++||+.|.++........++.++++|+.+. ++.... ....
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~ 138 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGR 138 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCC
Confidence 3567899999999999998887763 3589999999999999998876543334578899998652 221000 0112
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
..++++...+++ .+.++...++++++++|+|||.|++.
T Consensus 139 ~~~~~~gs~~~~--~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 139 RLGFFPGSTIGN--FTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred eEEEEecccccC--CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 334444455665 45778899999999999999999986
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=2.4e-15 Score=127.81 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++....+. ++.+.+.|+....+ +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-------~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-------QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-------cCCccEEE
Confidence 445999999999999999988765 999999999999999988766553 57788888755433 57899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+..++|+ .+.+....+++++.++|+|||++++.
T Consensus 190 ~~~vl~~--l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 190 STVVLMF--LNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred Ecchhhh--CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999987 45678889999999999999997765
No 41
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=1.5e-15 Score=127.01 Aligned_cols=106 Identities=21% Similarity=0.174 Sum_probs=84.8
Q ss_pred HHHHhc-CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775 24 LIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 24 li~~~~-~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (248)
++..+. .++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++ + +.++++|+.+..
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~------- 85 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G----VDARTGDVRDWK------- 85 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C----CcEEEcChhhCC-------
Confidence 344443 47889999999999998888776 235899999999999998753 2 678899985432
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
..++||+|+|..++|++- +...+++++.++|||||.+++.+++
T Consensus 86 ~~~~fD~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 PKPDTDVVVSNAALQWVP----EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCCceEEEEehhhhhCC----CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 256899999999999832 3578999999999999999998664
No 42
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.63 E-value=1.3e-14 Score=117.68 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhhh
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ 98 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~~ 98 (248)
+++.+|||+|||.|.++..++..+. +|+|+|+|+.+++.+.+..... ....++.++++|+.+.+..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-- 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA-- 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence 5778999999999999999999888 8999999999999864422100 0123588999999775431
Q ss_pred hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
..++||.|+...++++ .+.+.....++.+.++|+|||.+++.
T Consensus 110 ---~~~~fD~i~D~~~~~~--l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 ---DLGPVDAVYDRAALIA--LPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ---cCCCcCEEEechhhcc--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1357999988777775 46888899999999999999986654
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=1.5e-15 Score=127.15 Aligned_cols=104 Identities=29% Similarity=0.336 Sum_probs=85.0
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
..++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++.. ++.++.+|+.... ...+||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------~~~~~~~d~~~~~-------~~~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------DCQFVEADIASWQ-------PPQALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------CCeEEECchhccC-------CCCCcc
Confidence 347889999999999999888765 34699999999999999987753 2778899985432 246899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+|++..++|++- +...+++++.++|+|||.+++.+++.
T Consensus 96 ~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 96 LIFANASLQWLP----DHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred EEEEccChhhCC----CHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 999999999732 35689999999999999999987653
No 44
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.63 E-value=6.8e-17 Score=115.53 Aligned_cols=98 Identities=27% Similarity=0.289 Sum_probs=62.0
Q ss_pred EEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccc
Q 025775 36 CDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH 114 (248)
Q Consensus 36 LDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~ 114 (248)
||+|||+|..+..+... +..+++|+|+|+.|++.|+++...... ........+..+... .. ..++||+|++..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~--~~--~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFD--YD--PPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS-----CC--C----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhh--cc--cccccceehhhhh
Confidence 79999999999998877 455999999999999988888766431 112233333222111 00 1359999999999
Q ss_pred hhhhcCCHHHHHHHHHHHhccccCCcEE
Q 025775 115 LQMCFETEERARRLLQNVSSLLKPGGYF 142 (248)
Q Consensus 115 l~~~~~~~~~~~~~l~~~~~~LkpgG~~ 142 (248)
+|++ +++..+++++.++|+|||.|
T Consensus 76 l~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS------S-HHHHHHHHTTT-TSS-EE
T ss_pred Hhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 9984 66789999999999999986
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.63 E-value=1.1e-14 Score=115.51 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=90.1
Q ss_pred CCCCcccchhhhhHhHHHHHH-HHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCc
Q 025775 4 LPIPRSELTHHRLYEFAKTAL-IKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNF 81 (248)
Q Consensus 4 ~~~~r~~~~~~~~~~~~~~~l-i~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~ 81 (248)
+.-+|+.+|.....+.+...+ +...+ ++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.+++..+..+. .
T Consensus 15 ~~l~~~~~~~~~~~~~~~d~i~~~~~~-~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~ 92 (181)
T TIGR00138 15 FNLTSLKTPEEIWERHILDSLKLLEYL-DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-N 92 (181)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-C
Confidence 444666666544333222222 12223 4789999999999988887654 345899999999999999887766543 2
Q ss_pred eEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 82 ~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
++.++++|+.+.. ..++||+|+|.. +++ ...+++.+.++|+|||.+++...
T Consensus 93 ~i~~i~~d~~~~~-------~~~~fD~I~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 93 NVEIVNGRAEDFQ-------HEEQFDVITSRA-LAS-------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred CeEEEecchhhcc-------ccCCccEEEehh-hhC-------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 4899999986532 257899998865 333 45678888999999999998743
No 46
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.61 E-value=5.6e-15 Score=115.91 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.-.++||+|||.|.++..++... .+++++|+|+.+|+.|++|..... ++.+.++|+.+.. ++++||+|+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dvp~~~-------P~~~FDLIV 111 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLP---HVEWIQADVPEFW-------PEGRFDLIV 111 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-S---SEEEEES-TTT----------SS-EEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcCCCCC-------CCCCeeEEE
Confidence 34689999999999999998775 489999999999999999987754 4999999996633 478999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
+..+++| +.+.+++..++.++...|+|||.+++...
T Consensus 112 ~SEVlYY-L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 112 LSEVLYY-LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EES-GGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EehHhHc-CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9998887 45578899999999999999999998854
No 47
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.61 E-value=6.9e-15 Score=123.35 Aligned_cols=122 Identities=22% Similarity=0.234 Sum_probs=87.6
Q ss_pred hHhHHHHHHHHHh-cCCCCeEEEEcCCCCcc----HhHHHHc-C-----CCeEEEEeCChHHHHHHHHHHHh----cC--
Q 025775 16 LYEFAKTALIKIY-SHPYVTVCDLYCGAGVD----VDKWETA-L-----IANYIGIDVATSGIGEARDTWEN----QR-- 78 (248)
Q Consensus 16 ~~~~~~~~li~~~-~~~~~~VLDlGcG~G~~----~~~l~~~-~-----~~~v~giDis~~~l~~a~~~~~~----~~-- 78 (248)
+.+.+...++... ..++.+|||+|||||.. +..++.. + ..+++|+|+|+.||+.|++..-. .+
T Consensus 83 l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~ 162 (264)
T smart00138 83 LEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLP 162 (264)
T ss_pred HHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCC
Confidence 4444444444332 22457999999999973 2333322 1 23899999999999999874210 00
Q ss_pred --------------------CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC
Q 025775 79 --------------------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138 (248)
Q Consensus 79 --------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp 138 (248)
....+.|.++|+.+.++ +.++||+|+|..+++| .+.+....+++++++.|+|
T Consensus 163 ~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~y--f~~~~~~~~l~~l~~~L~p 234 (264)
T smart00138 163 KALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIY--FDEPTQRKLLNRFAEALKP 234 (264)
T ss_pred HHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHh--CCHHHHHHHHHHHHHHhCC
Confidence 01247899999977554 3678999999999998 4677788999999999999
Q ss_pred CcEEEEE
Q 025775 139 GGYFLGI 145 (248)
Q Consensus 139 gG~~i~~ 145 (248)
||++++.
T Consensus 235 GG~L~lg 241 (264)
T smart00138 235 GGYLFLG 241 (264)
T ss_pred CeEEEEE
Confidence 9999986
No 48
>PRK06202 hypothetical protein; Provisional
Probab=99.61 E-value=1.7e-14 Score=118.98 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc----C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~----~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
.++.+|||+|||+|..+..++.. + ..+++|+|+|+.|++.|+++....+ +.+.+.+....+. .++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~------~~~ 128 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA------EGE 128 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc------cCC
Confidence 35679999999999987777542 2 2489999999999999988764333 4555555433332 357
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+||+|+|.+++|+ .+.+....+++++.++++ + .+++.
T Consensus 129 ~fD~V~~~~~lhh--~~d~~~~~~l~~~~r~~~-~-~~~i~ 165 (232)
T PRK06202 129 RFDVVTSNHFLHH--LDDAEVVRLLADSAALAR-R-LVLHN 165 (232)
T ss_pred CccEEEECCeeec--CChHHHHHHHHHHHHhcC-e-eEEEe
Confidence 8999999999998 345557889999999998 4 44444
No 49
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.60 E-value=2.8e-14 Score=117.62 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.++.+|||||||+|..+..+...+. +++++|+++.+++.|+++....+. .+.+...|+.+... ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA-----EHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh-----hcCCCccEE
Confidence 3688999999999998888877654 899999999999999888765432 36677777643221 134789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
++...+++ ..+...+++++.+.|+|||.++++.++.
T Consensus 119 i~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 119 TCMEMLEH----VPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred EEhhHhhc----cCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 99887776 2346678999999999999999987764
No 50
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.60 E-value=1.5e-13 Score=117.56 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++..... ....+.|.+.|+.. + +++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--l-------~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--L-------SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh--c-------CCCc
Confidence 578999999999999988887764 89999999999999999876431 11246788888632 2 4789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
|+|+|..+++| ...+....+++.+.+ +.+||.++...|.
T Consensus 214 D~Vv~~~vL~H--~p~~~~~~ll~~l~~-l~~g~liIs~~p~ 252 (315)
T PLN02585 214 DTVTCLDVLIH--YPQDKADGMIAHLAS-LAEKRLIISFAPK 252 (315)
T ss_pred CEEEEcCEEEe--cCHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence 99999988876 344556677777775 4566665544443
No 51
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.59 E-value=4.4e-14 Score=115.66 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+|||+|..+..++.... .++|+|+++.+++.++.+....+. .++.+.+.|+.+.... .+++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-----~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEK-----GAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcC-----CCCCccEEE
Confidence 478999999999998888876655 799999999999999988765432 1377788876443221 236899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 150 (248)
+...+++. .+...+++++.+.|+|||.+++..++..
T Consensus 118 ~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 118 CMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred ehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 99888863 3466899999999999999998876643
No 52
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.59 E-value=1.8e-13 Score=112.48 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.++.+|||+|||+|..+..++..+. .|+|+|+|+.|++.|+++....+...++.+.++|+.. ..++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEE
Confidence 4678999999999999988887765 7999999999999999987665433358888888421 25689999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCc
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGG 140 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG 140 (248)
++..++|+ .+.+....+++++.+.+++++
T Consensus 132 ~~~~~l~~--~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 132 VCLDVLIH--YPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred EEcchhhc--CCHHHHHHHHHHHHhhcCCeE
Confidence 99998866 356678889999988765444
No 53
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.58 E-value=1.7e-14 Score=113.04 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=90.4
Q ss_pred CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEE-EEEcCCCCCc-hhhhhcccCCceeEEE
Q 025775 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAEN-FETQMQEKANQADLVC 110 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~~~~~~fD~V~ 110 (248)
..|||+|||||.....+-..+..+|+++|+++.|-+.|.++...+. ..++. |++++..+.+ + .++++|.|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l------~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQL------ADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCccc------ccCCeeeEE
Confidence 4589999999998877765566699999999999999998887653 34455 8899887755 3 588999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHHH
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQK 158 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~~ 158 (248)
|.+++- +.++..+.++++.++|+|||++++.-... ...+.++.+
T Consensus 151 ~TlvLC----Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q 196 (252)
T KOG4300|consen 151 CTLVLC----SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ 196 (252)
T ss_pred EEEEEe----ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence 999654 57778999999999999999999984433 344444433
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.58 E-value=1.9e-14 Score=116.17 Aligned_cols=121 Identities=17% Similarity=0.064 Sum_probs=88.9
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC-CCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~f 106 (248)
..++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+. .++.++++|+ ...+ ... .+++|
T Consensus 38 ~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~--~~~~~ 112 (202)
T PRK00121 38 GNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMF--PDGSL 112 (202)
T ss_pred CCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHc--Ccccc
Confidence 346789999999999999888765 345899999999999999988765543 3588999997 3322 111 35789
Q ss_pred eEEEeccchhhhcC----CHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775 107 DLVCCFQHLQMCFE----TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (248)
Q Consensus 107 D~V~~~~~l~~~~~----~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~ 154 (248)
|+|++.+...+... .......+++++.++|+|||++++.+++......
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~ 164 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEY 164 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 99998765432110 0112467899999999999999998877755443
No 55
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.57 E-value=6.5e-14 Score=110.03 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~-~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||+|..+..++..... +++++|+++.+++.+++....++... +.++..|+.+.. .+.+||+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-------~~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-------PDGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-------CTTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-------cccceeEE
Confidence 6889999999999988888877553 79999999999999999888776433 889999985532 25799999
Q ss_pred EeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 110 CCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 110 ~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+|+--+|.... .......+++...+.|+|||.+++.....
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 99876654211 23467899999999999999998775544
No 56
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.57 E-value=1.2e-13 Score=112.81 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+|||+|||+|..+..++.... .+++|+|+++.+++.++++... ..++.+..+|+.+.++ ..++||
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~------~~~~~D 108 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL---PLNIEFIQADAEALPF------EDNSFD 108 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc---CCCceEEecchhcCCC------CCCcEE
Confidence 3788999999999999988877644 4899999999999999887651 2247888999876554 356899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|++.+++|+ ..+...+++++.+.|+|||.+++.
T Consensus 109 ~i~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 109 AVTIAFGLRN----VTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred EEEEeeeeCC----cccHHHHHHHHHHHcCCCcEEEEE
Confidence 9999888776 334778999999999999999876
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.57 E-value=1.2e-13 Score=102.31 Aligned_cols=111 Identities=13% Similarity=0.014 Sum_probs=83.5
Q ss_pred HHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775 24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (248)
++..+ ..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.+++.....+. .++.++..|+..... .
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~--~--- 84 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALE--D--- 84 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccCh--h---
Confidence 44443 346789999999999999988876 346899999999999999987765432 247888888653111 0
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
...+||+|++....+ ...++++.+.+.|+|||.+++++.
T Consensus 85 ~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 SLPEPDRVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hcCCCCEEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 245899998866432 356899999999999999998753
No 58
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.56 E-value=3.6e-14 Score=119.73 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~----~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+..+|||+|||+|..+..++... ...++|+|+|+.|++.|+++.. ++.+.++|+.+.++ .+++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~------~~~~~~~d~~~lp~------~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP------QVTFCVASSHRLPF------ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC------CCeEEEeecccCCC------cCCce
Confidence 55789999999999888876541 2379999999999999987642 27789999877665 46799
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~ 154 (248)
|+|++.++. ..++++.++|+|||++++..|+...+..
T Consensus 153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e 189 (272)
T PRK11088 153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE 189 (272)
T ss_pred eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence 999986632 2357889999999999999998866543
No 59
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.56 E-value=3.7e-14 Score=116.86 Aligned_cols=107 Identities=22% Similarity=0.359 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||+|..+..++... ..+++|+|+++.+++.++.+... ++.++++|+.+.++ .+++||+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~------~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NVQFICGDAEKLPL------EDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CCeEEecchhhCCC------CCCceeEE
Confidence 45789999999999988887764 34789999999999999887642 37789999876554 46789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 152 (248)
++..++|+. .+...++.++.++|+|||.+++..+....+
T Consensus 103 i~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 103 VSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred EEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 999999873 346789999999999999999997766443
No 60
>PRK06922 hypothetical protein; Provisional
Probab=99.56 E-value=3e-14 Score=130.08 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc--hhhhhcccCCcee
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~fD 107 (248)
++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+ .++.++++|+.+.+ + .+++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f------edeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF------EKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc------CCCCEE
Confidence 6789999999999988777664 44699999999999999998765433 24778889986543 2 467899
Q ss_pred EEEeccchhhhcC---------CHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 108 LVCCFQHLQMCFE---------TEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 108 ~V~~~~~l~~~~~---------~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
+|++...+|+.+. +.+....+++++.++|||||.+++..
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999998986532 34678999999999999999999973
No 61
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=5.4e-14 Score=118.65 Aligned_cols=106 Identities=24% Similarity=0.239 Sum_probs=84.1
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-CC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+.++.+|||+|||+|..+..++.. +. .+++|+|+++.|++.|+++....+. .++.+.++|+.+.++ .+++|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~------~~~~f 147 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPV------ADNSV 147 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCC------CCCce
Confidence 347899999999999877655543 32 4799999999999999987765442 257889999866554 35789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|++..++|+. .+...+++++.++|||||.+++.
T Consensus 148 D~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 148 DVIISNCVINLS----PDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred eEEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEE
Confidence 999999888762 23567899999999999999987
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.53 E-value=2e-13 Score=111.19 Aligned_cols=108 Identities=17% Similarity=0.066 Sum_probs=84.2
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhh
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFET 97 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~ 97 (248)
.+++.+|||+|||.|.++..++..+. +|+|+|+|+.+++.+.....-. -...++.+.++|+.+.+..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~- 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA- 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc-
Confidence 35678999999999999999998888 8999999999999864321100 0123588999999775421
Q ss_pred hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (248)
Q Consensus 98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 144 (248)
..+.||.|+...++++ .+.+.....++.+.++|+|||.+++
T Consensus 113 ----~~~~fd~v~D~~~~~~--l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 ----DLADVDAVYDRAALIA--LPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ----cCCCeeEEEehHhHhh--CCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 1357999998887775 5788899999999999999996444
No 63
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.52 E-value=1.3e-13 Score=113.65 Aligned_cols=105 Identities=25% Similarity=0.322 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
++.+|||+|||+|..+..++... ..+++|+|+++.+++.++++....+...++.+..+|+.+..+ ..++||+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~ 124 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFDA 124 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCccE
Confidence 67899999999999988887764 369999999999999999887653333358899999876543 3578999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|++..++|+. .+...+++++.+.|+|||.+++.
T Consensus 125 I~~~~~l~~~----~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 125 VTIAFGLRNV----PDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EEEecccccC----CCHHHHHHHHHHhccCCcEEEEE
Confidence 9998888763 34678899999999999998876
No 64
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.52 E-value=2.2e-14 Score=113.14 Aligned_cols=102 Identities=28% Similarity=0.312 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
+..+|.|||||+|..+..++++ +.+.++|+|.|++||+.|+.+... +.|.++|+.+-. +....|++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~------~~f~~aDl~~w~-------p~~~~dll 96 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD------ATFEEADLRTWK-------PEQPTDLL 96 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC------CceecccHhhcC-------CCCccchh
Confidence 6678999999999999888877 667999999999999999887654 779999986643 35789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+++.++|++-+ -..++..+...|.|||.+.+..|+.
T Consensus 97 faNAvlqWlpd----H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 97 FANAVLQWLPD----HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhccc----cHHHHHHHHHhhCCCceEEEECCCc
Confidence 99999999544 4457777888999999999999987
No 65
>PRK08317 hypothetical protein; Provisional
Probab=99.52 E-value=2.1e-13 Score=112.32 Aligned_cols=108 Identities=25% Similarity=0.329 Sum_probs=86.8
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
..++.+|||+|||+|..+..++.. +..+++|+|+++.+++.++++.... ..++.+.++|+...++ .+++|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~~ 88 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF------PDGSF 88 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC------CCCCc
Confidence 457889999999999998888765 3458999999999999998873322 2348889999876554 35789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
|+|++..++++. .+...+++++.++|+|||.+++..++
T Consensus 89 D~v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred eEEEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 999999888763 34678899999999999999987654
No 66
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=2.9e-13 Score=115.05 Aligned_cols=110 Identities=20% Similarity=0.160 Sum_probs=84.6
Q ss_pred HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
+..+..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|++....++...++.+...+.. .. ..+
T Consensus 153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~------~~~ 224 (288)
T TIGR00406 153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QP------IEG 224 (288)
T ss_pred HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cc------cCC
Confidence 4455667899999999999988777776767999999999999999998876654444555655531 11 256
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+||+|++.... +.+..++.++.++|+|||+++++....
T Consensus 225 ~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 225 KADVIVANILA-------EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred CceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 89999987643 235678999999999999999985543
No 67
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.52 E-value=3.7e-13 Score=112.23 Aligned_cols=103 Identities=20% Similarity=0.165 Sum_probs=77.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHH--HHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.|.+|||||||+|.++..++..+++.|+|+|.++..+.+... ++.+.. .......+.-+++ + ..+.||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lplgvE~L----p-~~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELPLGVEDL----P-NLGAFDT 185 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcCcchhhc----c-ccCCcCE
Confidence 789999999999999999999999999999999998876443 333221 2222222222222 1 1578999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|+|..++.| ..+.-..+.+++..|+|||.+++.+
T Consensus 186 VF~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 999998876 4556778999999999999999873
No 68
>PLN03075 nicotianamine synthase; Provisional
Probab=99.52 E-value=2.8e-13 Score=113.90 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCCCccHhHHHH--c-CCCeEEEEeCChHHHHHHHHHHHh-cCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWET--A-LIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~--~-~~~~v~giDis~~~l~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
++.+|+|||||.|..+..+.. . +.++++|+|+++++++.|++.+.. .+...++.|.++|+.+... ..+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------SLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc------ccCCc
Confidence 678999999998866554433 2 445899999999999999998854 4444569999999966321 23689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|+|+|. ++|+ ...++..++++++.+.|+|||++++...
T Consensus 197 DlVF~~-ALi~--~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 197 DVVFLA-ALVG--MDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CEEEEe-cccc--cccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999999 8887 3456788999999999999999999863
No 69
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=110.79 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=112.0
Q ss_pred eEEEEcCCCCccHhHHHHcCC---CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 34 TVCDLYCGAGVDVDKWETALI---ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 34 ~VLDlGcG~G~~~~~l~~~~~---~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
+|||+|||.|..+..+.+... -.+.++|.||.+++..++...... .++.-.+.|++.+.+...+ ..+++|+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~--~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPP--EEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCC--CcCccceEE
Confidence 799999999999988887632 379999999999998887543322 2366677888776643222 468999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecc
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV 190 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 190 (248)
+.+++-- .+.+....+++++.++|||||.+++---....+. + ++|..
T Consensus 150 ~IFvLSA--i~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-q------------------------------lRF~~ 196 (264)
T KOG2361|consen 150 LIFVLSA--IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-Q------------------------------LRFKK 196 (264)
T ss_pred EEEEEec--cChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-H------------------------------HhccC
Confidence 9998865 6788899999999999999999998744332221 1 11210
Q ss_pred cCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEe
Q 025775 191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237 (248)
Q Consensus 191 ~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~ 237 (248)
. ..++ ..|+..++.+ .-|+.+.+.|.+++.++||..++.
T Consensus 197 ~----~~i~--~nfYVRgDGT--~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 197 G----QCIS--ENFYVRGDGT--RAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred C----ceee--cceEEccCCc--eeeeccHHHHHHHHHhcccchhcc
Confidence 0 0000 1122333332 347889999999999999998754
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.50 E-value=4.9e-13 Score=107.26 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=103.1
Q ss_pred HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhcccC
Q 025775 26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA 103 (248)
Q Consensus 26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~ 103 (248)
...++++.+|||+|||+|..+..++......++|+|+|+.+++.++.+ + +.++++|+.+. ++ .+
T Consensus 8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~------~~ 73 (194)
T TIGR02081 8 LNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAF------PD 73 (194)
T ss_pred HHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhccccc------CC
Confidence 344567889999999999998888665444789999999999988642 2 56788887541 12 35
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCce
Q 025775 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES 183 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 183 (248)
++||+|+|..++|++ .+...+++++.+. +|..++++|+......... +...+. ..
T Consensus 74 ~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~---~~~~ii~~p~~~~~~~~~~-----~~~~~~------~~------- 128 (194)
T TIGR02081 74 KSFDYVILSQTLQAT----RNPEEILDEMLRV---GRHAIVSFPNFGYWRVRWS-----ILTKGR------MP------- 128 (194)
T ss_pred CCcCEEEEhhHhHcC----cCHHHHHHHHHHh---CCeEEEEcCChhHHHHHHH-----HHhCCc------cc-------
Confidence 789999999999873 2356677777665 4556777777543322211 000000 00
Q ss_pred eEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCch
Q 025775 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (248)
Q Consensus 184 ~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~ 241 (248)
.. ... .|.+.. . ....+.+.+.+.++++++||+++....+.
T Consensus 129 ----~~---~~~-----~~~~~~-~----~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 129 ----VT---GEL-----PYDWYN-T----PNIHFCTIADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred ----cC---CCC-----CccccC-C----CCcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence 00 000 011110 0 12346789999999999999999877664
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=6.6e-13 Score=115.94 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=84.4
Q ss_pred CCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 32 YVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+.+|||+|||+|..+..++... ..+++++|+|+.|++.|++....++.. .++.++..|+.+. + .+.+||+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~------~~~~fDl 301 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V------EPFRFNA 301 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C------CCCCEEE
Confidence 4689999999999988887763 459999999999999999887654321 2578888887442 1 2458999
Q ss_pred EEeccchhhhc-CCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 109 VCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 109 V~~~~~l~~~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|+|+-.+|... .+.....+++..+.++|+|||.+++...
T Consensus 302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 99987666432 2344567899999999999999998853
No 72
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.50 E-value=6.5e-14 Score=102.93 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=85.5
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
|.+|||+|||+|..+..++.....+++|+|+++.+++.|+......+...++.++++|..... ... ..++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~--~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPL--PDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTC--TTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhc--cCceeEEEEE
Confidence 568999999999999888877756999999999999999998887665556899999984432 111 4689999999
Q ss_pred ccchhhhcCC----HHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 112 FQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 112 ~~~l~~~~~~----~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
.--....... .+....+++.+.++|+|||.+++.+|+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6544321111 124578999999999999999998764
No 73
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=111.04 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=85.2
Q ss_pred CCCCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceE
Q 025775 4 LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA 83 (248)
Q Consensus 4 ~~~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~ 83 (248)
|..+|+.+| .+|++.. ..+......++|+|||+|..+.-++. .+.+|+|+|+|+.||+.|++..+........
T Consensus 12 Y~~ARP~YP----tdw~~~i--a~~~~~h~~a~DvG~G~Gqa~~~iae-~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~ 84 (261)
T KOG3010|consen 12 YLNARPSYP----TDWFKKI--ASRTEGHRLAWDVGTGNGQAARGIAE-HYKEVIATDVSEAMLKVAKKHPPVTYCHTPS 84 (261)
T ss_pred HhhcCCCCc----HHHHHHH--HhhCCCcceEEEeccCCCcchHHHHH-hhhhheeecCCHHHHHHhhcCCCcccccCCc
Confidence 457899999 3565533 23333333899999999976666654 4679999999999999988765432211112
Q ss_pred EEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEe
Q 025775 84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGIT 146 (248)
Q Consensus 84 ~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~ 146 (248)
.....+. .++ ...+++.|+|+|..++|+ |. ++++.+++.++||++| .+.+..
T Consensus 85 ~ms~~~~--v~L----~g~e~SVDlI~~Aqa~HW-Fd----le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 85 TMSSDEM--VDL----LGGEESVDLITAAQAVHW-FD----LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred ccccccc--ccc----cCCCcceeeehhhhhHHh-hc----hHHHHHHHHHHcCCCCCEEEEEE
Confidence 2222222 122 113789999999999998 44 7889999999998766 666653
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=8.8e-13 Score=106.70 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=78.9
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
..++.+|||+|||+|..+..++.. ..++|+++|+++.+++.|+++....+...++.++++|..+... ...+|
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------~~~~f 143 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------KHAPF 143 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------cCCCc
Confidence 357889999999999988777654 2358999999999999999888765543358899999865322 24689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|+|++..+.++ +.+++.+.|+|||.+++..
T Consensus 144 D~Ii~~~~~~~----------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 144 DAIIVTAAAST----------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cEEEEccCcch----------hhHHHHHhcCcCcEEEEEE
Confidence 99999876554 2246778999999998864
No 75
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.48 E-value=1.6e-12 Score=103.66 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=79.8
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
..++.+|||+|||+|..+..++... ..+++++|+|+.+++.|++.....+. .++.++++|+.. .+ .++||
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-------~~~~D 99 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-------PGKAD 99 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-------CcCCC
Confidence 3478899999999999888887653 35899999999999999887765432 247888888631 11 45799
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
+|++....++ ...++..+.+.|+|||.+++...
T Consensus 100 ~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 100 AIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 9998764432 45688899999999999988754
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.47 E-value=1.8e-12 Score=104.27 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=88.1
Q ss_pred HHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775 20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (248)
Q Consensus 20 ~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (248)
++...+... ..++.+|||+|||+|.++..++.. +..+++++|+++.+++.|+++....+...++.++.+|+.+.
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~--- 104 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI--- 104 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh---
Confidence 343444443 458899999999999988877654 33589999999999999998876655334578888887442
Q ss_pred hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (248)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 152 (248)
++...++||+|++... ......+++.+.++|+|||.+++..+..+.+
T Consensus 105 --l~~~~~~~D~V~~~~~-------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 151 (198)
T PRK00377 105 --LFTINEKFDRIFIGGG-------SEKLKEIISASWEIIKKGGRIVIDAILLETV 151 (198)
T ss_pred --HhhcCCCCCEEEECCC-------cccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence 1112468999987542 2236778999999999999999876665443
No 77
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.47 E-value=7.6e-13 Score=104.80 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+|||+|..+..++.... +++|+|+|+.|++.++++....+ ..+.+.++|+.+.. .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--------~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN--VGLDVVMTDLFKGV--------RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC--CceEEEEccccccc--------CCcccEEE
Confidence 567899999999999988887766 89999999999999998876554 24788888875421 35899999
Q ss_pred eccchhhhcC-----------------CHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 111 CFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 111 ~~~~l~~~~~-----------------~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
+....+..-. .......+++++.++|+|||.+++..+.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 9865543211 1122578899999999999999887543
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=6.4e-13 Score=120.65 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||||||+|..+..++... .+++|+|+++.|++.++..... ..++.++++|+....+. .++++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~----~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLN----ISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccC----CCCCCEEEEe
Confidence 56799999999999999987764 4899999999999987654321 12488999998643221 1457899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|..++|+ .+.+....+++++.++|+|||++++.
T Consensus 109 ~~~~l~~--l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMY--LSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHh--CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999998 45666889999999999999999886
No 79
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.46 E-value=1.3e-12 Score=112.03 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=87.2
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+|||||||+|..+..+++. +..+++++|+ +.+++.++++....+...+++++.+|+.+.++ ..+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--------~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--------PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--------CCCCE
Confidence 46789999999999999888876 3358999997 78999999888776655678999999876443 23699
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|++...+|. .+.+....+++++.+.|+|||.+++.
T Consensus 219 v~~~~~lh~--~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 219 VLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEeEhhhhc--CChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998888886 45667789999999999999999887
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.45 E-value=6e-13 Score=106.75 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.+..+|||||||+|..+..++.. +..+++|+|+++.+++.|+++....+.. ++.++++|+.... .... .++++|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~--~~~~-~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL--DKFF-PDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH--HhhC-CCCceeE
Confidence 45678999999999999888876 3458999999999999998887665432 5899999985421 1110 2458999
Q ss_pred EEeccchhhhcCCH-----HHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775 109 VCCFQHLQMCFETE-----ERARRLLQNVSSLLKPGGYFLGITPDSST 151 (248)
Q Consensus 109 V~~~~~l~~~~~~~-----~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 151 (248)
|++.+.-++. ... -....+++++.++|||||.+++.+.+...
T Consensus 91 v~~~~pdpw~-k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~ 137 (194)
T TIGR00091 91 VFLNFPDPWP-KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL 137 (194)
T ss_pred EEEECCCcCC-CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 9887654431 100 01257899999999999999998776653
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.45 E-value=1.4e-12 Score=105.75 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=81.1
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh--cccCC
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM--QEKAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~ 104 (248)
+.++.+|||||||+|.++..++... ...|+|+|+++ |. .. ..+.++++|+.+....+.+ ....+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~------~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI------VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC------CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 5688899999999999998887752 35899999998 21 11 1388999999875421111 01357
Q ss_pred ceeEEEeccchhhhcCCH-H------HHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775 105 QADLVCCFQHLQMCFETE-E------RARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~-~------~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 156 (248)
+||+|+|..+.++.-.+. + ....+++++.++|+|||.|++.+..++.+.+.+
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l 175 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL 175 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence 899999987666421111 1 125789999999999999999877665444433
No 82
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=2.1e-12 Score=111.95 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
...+|||+|||+|..+..++... ..+++++|+|+.|++.|++....++. ...++..|+... ..++||+|
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--------~~~~fDlI 265 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--------IKGRFDMI 265 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--------cCCCccEE
Confidence 35689999999999888887763 35899999999999999998876653 356677776431 25689999
Q ss_pred EeccchhhhcCC-HHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 110 CCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 110 ~~~~~l~~~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
+|+..+|+.... ......++.++.+.|+|||.+++....
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 999888864332 456789999999999999999987544
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.44 E-value=2.1e-12 Score=107.64 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=75.9
Q ss_pred HhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
....++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|++....++....+.+..+ +.+|
T Consensus 115 ~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------------~~~f 180 (250)
T PRK00517 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------------DLKA 180 (250)
T ss_pred hhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------CCCc
Confidence 34567899999999999888777666666799999999999999988776542111221111 2279
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
|+|++.... +....++.++.++|+|||.++++....
T Consensus 181 D~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 181 DVIVANILA-------NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 999886532 336678999999999999999985443
No 84
>PRK04266 fibrillarin; Provisional
Probab=99.44 E-value=2e-12 Score=105.83 Aligned_cols=108 Identities=17% Similarity=0.091 Sum_probs=78.9
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
+.++.+|||+|||+|..+..++.. +.+.|+|+|+++.|++.+.++.... .++.++.+|+........ ...+||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~---l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH---VVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh---ccccCC
Confidence 448899999999999999888765 3358999999999999776665432 237888999865311111 135699
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
+|++... .......+++++.++|||||.++++++.
T Consensus 144 ~i~~d~~------~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 144 VIYQDVA------QPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred EEEECCC------ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9975432 2333456789999999999999997553
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=99.43 E-value=3.2e-12 Score=104.75 Aligned_cols=111 Identities=19% Similarity=0.148 Sum_probs=82.9
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.+++.....+. ++.++++|+... + .+++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~------~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-V------EFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-c------cCCCeeE
Confidence 457889999999999988888776656999999999999999887765442 477888887542 2 3568999
Q ss_pred EEeccchhhhc-----------------CCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 109 VCCFQHLQMCF-----------------ETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 109 V~~~~~l~~~~-----------------~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
|++....+... ......+.+++++.++|+|||.+++....
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99864222110 11223677899999999999999986444
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.43 E-value=1.7e-12 Score=112.41 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=90.3
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.+++.+|||+|||+|..+...+..+ ..++|+|+++.|++.|+......+... +.+.++|+.+.++ .+++||+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~------~~~~~D~ 251 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL------SSESVDA 251 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc------ccCCCCE
Confidence 4578899999999999887765544 489999999999999988876654322 6788999877654 3578999
Q ss_pred EEeccchhh--hc---CCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 109 VCCFQHLQM--CF---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 109 V~~~~~l~~--~~---~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
|++..-... .. ...+....+++++.++|+|||.+++.+|+...+...+.
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~ 305 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAE 305 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHh
Confidence 998632110 00 11234688999999999999999999888755554443
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=3.2e-12 Score=103.97 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=78.3
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
..++.+|||||||+|..+..++.. + .++|+++|+++++++.|+++....+. .++.++++|...... ..++|
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~------~~~~f 146 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYE------ENAPY 146 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCC------cCCCc
Confidence 458899999999999988777665 2 35999999999999999998876542 358999999865432 35789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|+|++..+.+. +...+.+.|+|||.+++..
T Consensus 147 D~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence 99998775443 2235667899999998864
No 88
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.41 E-value=2.5e-13 Score=105.67 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=64.6
Q ss_pred EEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhcc
Q 025775 58 IGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135 (248)
Q Consensus 58 ~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~ 135 (248)
+|+|+|++||+.|+++..... ...+++++++|+.+.++ .+++||+|++.+++|+. ++..+++++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRNV----VDRLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhcC----CCHHHHHHHHHHH
Confidence 489999999999987764321 12358999999987665 47799999999999873 3578999999999
Q ss_pred ccCCcEEEEEec
Q 025775 136 LKPGGYFLGITP 147 (248)
Q Consensus 136 LkpgG~~i~~~~ 147 (248)
|||||.+++...
T Consensus 71 LkpGG~l~i~d~ 82 (160)
T PLN02232 71 LKPGSRVSILDF 82 (160)
T ss_pred cCcCeEEEEEEC
Confidence 999999987733
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.41 E-value=1.6e-12 Score=109.88 Aligned_cols=106 Identities=25% Similarity=0.314 Sum_probs=81.2
Q ss_pred HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (248)
Q Consensus 23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 102 (248)
.++..+..++.+|||+|||+|-++...+..+.++|+|+|+++.+++.|++....++...++... . ..+. .
T Consensus 153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~--~~~~------~ 222 (295)
T PF06325_consen 153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L--SEDL------V 222 (295)
T ss_dssp HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C--TSCT------C
T ss_pred HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E--eccc------c
Confidence 3456677889999999999998888887888889999999999999999988777654444332 1 1112 2
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
..+||+|+++-.. +.+..++..+.++|+|||+++++
T Consensus 223 ~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 223 EGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred cccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEc
Confidence 4789999887633 34678889999999999999998
No 90
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.7e-12 Score=108.92 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=81.2
Q ss_pred HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (248)
Q Consensus 24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 103 (248)
.++.+..++.+|||+|||+|-++...+..+...++|+|++|.+++.|+.....++....+.....+... .. ..
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~-----~~--~~ 227 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE-----VP--EN 227 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh-----hc--cc
Confidence 355666689999999999999888888889989999999999999999987766532111111111111 11 23
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
++||+|+++-. .+.+..+...+.+.|+|||+++++-
T Consensus 228 ~~~DvIVANIL-------A~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 228 GPFDVIVANIL-------AEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred CcccEEEehhh-------HHHHHHHHHHHHHHcCCCceEEEEe
Confidence 69999998762 2336789999999999999999984
No 91
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.40 E-value=3.9e-12 Score=103.54 Aligned_cols=114 Identities=11% Similarity=-0.007 Sum_probs=89.5
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh-----------cCCCceEEEEEcCCCCCchhh
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-----------QRKNFIAEFFEADPCAENFET 97 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~ 97 (248)
.+++.+||..|||.|.++..++..+. +|+|+|+|+.+++.+.+.... .....++.++++|+.+.+...
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34678999999999999999999998 799999999999998653210 001235899999998754210
Q ss_pred hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
...++||+|+-..+++. .+.+...+.++.+.++|+|||.+++.+.+
T Consensus 120 ---~~~~~fD~VyDra~~~A--lpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 120 ---NNLPVFDIWYDRGAYIA--LPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ---cccCCcCeeeeehhHhc--CCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 02368999988888876 57888999999999999999998887543
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.39 E-value=4.9e-12 Score=103.11 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=78.1
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
..++.+|||||||+|..+..++... .++|+++|+++.+++.|++++...+. .++.++++|...... ...+|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~------~~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE------PLAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc------ccCCC
Confidence 4588999999999999998877653 24699999999999999998876553 358899999855322 24689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|+|++...... +.+.+.+.|+|||++++..
T Consensus 148 D~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 148 DRIYVTAAGPK----------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CEEEEcCCccc----------ccHHHHHhcCcCcEEEEEE
Confidence 99988765443 2345778899999999864
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.39 E-value=1.5e-11 Score=104.19 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++.....+...++.++++|+.+. + +..+||+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~------~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L------PGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c------CCCCccEE
Confidence 4578999999999999888775 33589999999999999999887665444689999998542 2 24579999
Q ss_pred Eeccc-------------hhh----h----cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 110 CCFQH-------------LQM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 110 ~~~~~-------------l~~----~----~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+++-- .++ . -...+....++.++.++|+|||.+++.+...
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS 254 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 98521 010 0 0112345788999999999999999987654
No 94
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.38 E-value=7.1e-13 Score=105.53 Aligned_cols=140 Identities=19% Similarity=0.281 Sum_probs=99.1
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
-.++||||||||-....+... ..+++|+|||.+|++.|.++--- -.+.++|+.. |.+. ..+.+||+|++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~--Fl~~--~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVL--FLED--LTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch------HHHHHHHHHH--Hhhh--ccCCcccchhh
Confidence 468999999999877777554 34899999999999999876321 1233444311 2111 14678999999
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEeccc
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 191 (248)
..++.| ...++.++.-+...|+|||.|.+++-+..
T Consensus 195 aDVl~Y----lG~Le~~~~~aa~~L~~gGlfaFSvE~l~----------------------------------------- 229 (287)
T COG4976 195 ADVLPY----LGALEGLFAGAAGLLAPGGLFAFSVETLP----------------------------------------- 229 (287)
T ss_pred hhHHHh----hcchhhHHHHHHHhcCCCceEEEEecccC-----------------------------------------
Confidence 998888 55688899999999999999998743321
Q ss_pred CCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecC
Q 025775 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239 (248)
Q Consensus 192 ~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~ 239 (248)
..|. |-+.. ...|-.+.+.++++++.+||+++....
T Consensus 230 -----~~~~---f~l~p----s~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 230 -----DDGG---FVLGP----SQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred -----CCCC---eecch----hhhhccchHHHHHHHHhcCceEEEeec
Confidence 0011 21222 235777888999999999999997654
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=9.3e-12 Score=98.94 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCce-EEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.+++.....+...+ +.++++|+.+.. ...+||+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~d~ 93 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-------RGDKFDV 93 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-------cccCceE
Confidence 477899999999999998888774 5999999999999999887765443222 778888875522 2348999
Q ss_pred EEeccchhh-----------------hcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 109 VCCFQHLQM-----------------CFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 109 V~~~~~l~~-----------------~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
|++...... ...+......+++++.++|+|||.+++..++.
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 987542211 01123446789999999999999998876643
No 96
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.36 E-value=1.4e-11 Score=97.64 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=85.8
Q ss_pred HhcCC--CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhcccC
Q 025775 27 IYSHP--YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKA 103 (248)
Q Consensus 27 ~~~~~--~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~ 103 (248)
..++. ..-|||||||+|.....+...+. .++|+|||+.|++.|.++--. -.++.+|+.. .++ .+
T Consensus 44 Lalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~Glpf------rp 110 (270)
T KOG1541|consen 44 LALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPF------RP 110 (270)
T ss_pred hhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCC------CC
Confidence 34443 56799999999987777766664 899999999999999874222 2467777753 233 68
Q ss_pred CceeEEEeccchhhhcC-------CHHHHHHHHHHHhccccCCcEEEEEe-cChhHHHHHH
Q 025775 104 NQADLVCCFQHLQMCFE-------TEERARRLLQNVSSLLKPGGYFLGIT-PDSSTIWAKY 156 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~~~~~LkpgG~~i~~~-~~~~~~~~~~ 156 (248)
++||.|++..++++.+. +...+..++..+..+|++|+..++.+ |..+.-.+.+
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence 99999999887776533 34457789999999999999999994 4433333333
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=2.8e-11 Score=103.57 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=82.6
Q ss_pred CeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++.....+...++.++++|+.+. + +.++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l------~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-L------PGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-C------CCCCccEEEE
Confidence 68999999999998888765 34589999999999999999887665444689999997441 1 2457999998
Q ss_pred ccc------h-------hh----h----cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 112 FQH------L-------QM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 112 ~~~------l-------~~----~----~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+-- + ++ . -...+....+++++.+.|+|||.+++.+...
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 520 0 10 0 0012345788999999999999999976544
No 98
>PTZ00146 fibrillarin; Provisional
Probab=99.35 E-value=1.1e-11 Score=103.94 Aligned_cols=105 Identities=14% Similarity=0.056 Sum_probs=75.3
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+.++.+|||+|||+|.++..++.. ....|+++|+++.|++......... .++.++..|+...... .....++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y---~~~~~~v 203 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKY---RMLVPMV 203 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhh---hcccCCC
Confidence 358899999999999999998876 2458999999998664444333221 1378889998653211 1123579
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|++..+ ..++...++.++.++|||||.|++.
T Consensus 204 DvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA------QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99988763 2335666778899999999999985
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.34 E-value=1.9e-11 Score=98.24 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+|||+|||+|..+..++.. +..+++++|+|+.+++.++++....+. .++.++.+|+.+. +. . ....+|.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~-~~-~---~~~~~d~ 112 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC-LA-Q---LAPAPDR 112 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH-Hh-h---CCCCCCE
Confidence 47889999999999988887654 346999999999999999988765443 2488888887431 10 1 1234576
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~ 153 (248)
+++.. ......+++++.+.|+|||.+++..++.+.+.
T Consensus 113 v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 149 (196)
T PRK07402 113 VCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGLY 149 (196)
T ss_pred EEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence 64422 12357889999999999999999988765443
No 100
>PRK04457 spermidine synthase; Provisional
Probab=99.34 E-value=2.7e-11 Score=101.51 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=83.2
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+++.+|||||||+|..+..++.. +..+++++|+++.+++.|++.+.......++.++++|+.+ + +.....+||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~--~---l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE--Y---IAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH--H---HHhCCCCCCE
Confidence 45678999999999988878665 4458999999999999999887543323468899999743 1 1113468999
Q ss_pred EEeccchhhh-cCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775 109 VCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (248)
Q Consensus 109 V~~~~~l~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 152 (248)
|++.. .+.. ....-...++++++.+.|+|||++++...+.+..
T Consensus 140 I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~ 183 (262)
T PRK04457 140 ILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKR 183 (262)
T ss_pred EEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchh
Confidence 98753 1110 0111124789999999999999999875544433
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.34 E-value=3.3e-11 Score=102.27 Aligned_cols=110 Identities=15% Similarity=0.274 Sum_probs=82.7
Q ss_pred CeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
.+|||+|||+|..+..++... ..+++|+|+|+.+++.|++.....+...++.++++|+.+. + ...+||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~------~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L------AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C------cCCCccEEEE
Confidence 689999999999888887753 3589999999999999999877655444589999998542 2 2347999998
Q ss_pred cc-------------chhh----h----cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 112 FQ-------------HLQM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 112 ~~-------------~l~~----~----~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+- ..++ . .........+++++.+.|+|||.+++.+.+.
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 51 1111 0 0112357789999999999999999886654
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.34 E-value=8.5e-12 Score=102.14 Aligned_cols=134 Identities=17% Similarity=0.143 Sum_probs=99.4
Q ss_pred HHHHHHHHhcC--CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775 20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (248)
Q Consensus 20 ~~~~li~~~~~--~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (248)
+-..|+..+++ ...+|||||||+|.....++.+ ...+++|+|+++.+.+.|++..+.+++..++.++++|+.+...
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~- 109 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK- 109 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh-
Confidence 45677888765 5679999999999988888877 4479999999999999999988887777889999999865322
Q ss_pred hhhcccCCceeEEEeccchhhh--------------cCCHHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHH
Q 025775 97 TQMQEKANQADLVCCFQHLQMC--------------FETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (248)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~--------------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~ 157 (248)
.. ...+||+|+|+--..-. ++..-..+.+++.+.++|||||.+.+..+.. ..+.+.++
T Consensus 110 -~~--~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~ 183 (248)
T COG4123 110 -AL--VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK 183 (248)
T ss_pred -cc--cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence 11 23469999996422110 0111236789999999999999999886544 33444444
No 103
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.33 E-value=1.9e-11 Score=97.58 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=75.6
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCC
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~ 104 (248)
++++.+|||+|||+|..+..++.. +..+++|+|+|+.+ .. ..+.++++|+.+......+. ...+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~------~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI------ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC------CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 458899999999999988877665 33479999999865 11 12778888987643211111 1356
Q ss_pred ceeEEEeccchhh----hcC---CHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 105 QADLVCCFQHLQM----CFE---TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 105 ~fD~V~~~~~l~~----~~~---~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+||+|++..+.+. ... ..+....++.++.++|+|||.+++.....
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 7999998654321 111 12345789999999999999999975544
No 104
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.33 E-value=3.4e-11 Score=97.90 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=77.3
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..++.+|||+|||+|..+..++... .+++++|+++++++.|++++...+. .++.+.++|..+... ..++||+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~fD~ 147 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGWP------AYAPFDR 147 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCCC------cCCCcCE
Confidence 3478899999999999887665554 4899999999999999998876543 238889998754221 2468999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|++....++ +.+.+.+.|+|||.+++...
T Consensus 148 I~~~~~~~~----------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPE----------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence 998775544 23456789999999998755
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.32 E-value=3e-11 Score=105.30 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.+..+||||||+|..+..++... ...++|+|+++.+++.|.++....+. .++.++++|+... ...+ +++++|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~l--l~~~--~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLL--LELL--PSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHh--hhhC--CCCceeEE
Confidence 45689999999999999998773 45899999999999999988776543 3488999998542 1111 46899999
Q ss_pred EeccchhhhcCCHH---HHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775 110 CCFQHLQMCFETEE---RARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (248)
Q Consensus 110 ~~~~~l~~~~~~~~---~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 152 (248)
++.+...|. .... ....+++.+.++|+|||.+.+.+-+....
T Consensus 197 ~lnFPdPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 197 FVHFPVPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred EEeCCCCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 887654431 1010 12689999999999999999987776544
No 106
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.32 E-value=1.1e-10 Score=92.81 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=82.6
Q ss_pred HHHhcCCCC-eEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh--hc
Q 025775 25 IKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ--MQ 100 (248)
Q Consensus 25 i~~~~~~~~-~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~ 100 (248)
+..++++.. +|||||||||.++..++.. +.-..--.|+++..+..-.+.....+...-..-+..|+....-.-. ..
T Consensus 18 L~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~ 97 (204)
T PF06080_consen 18 LKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP 97 (204)
T ss_pred HHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence 344555444 5999999999999999887 3347778899988876555544433211001234556655421100 00
Q ss_pred ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
....+||+|+|...+|. .+.+..+.+++.+.++|++||.|++-
T Consensus 98 ~~~~~~D~i~~~N~lHI--~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 98 LSPESFDAIFCINMLHI--SPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cCCCCcceeeehhHHHh--cCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 12468999999999997 67888999999999999999999874
No 107
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.31 E-value=5.2e-11 Score=99.04 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..+.+|||+|||+|..+..++.. +...++|+|+++.+++.|+......+.. ++.++++|+.+. + ..++||+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~------~~~~fD~ 157 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP-L------PGGKFDL 157 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc-C------cCCceeE
Confidence 34568999999999999888776 3458999999999999999887665432 488999998652 2 3578999
Q ss_pred EEeccchh------hhc------C----------CHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 109 VCCFQHLQ------MCF------E----------TEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 109 V~~~~~l~------~~~------~----------~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|++....+ ... + .......+++++.++|+|||.+++...
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 99853221 100 0 012235789999999999999998754
No 108
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.30 E-value=6.7e-11 Score=103.82 Aligned_cols=121 Identities=16% Similarity=0.089 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|++.....+ .++.++++|+.+..+. ..++||+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~-----~~~~FDL 322 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMP-----SEGKWDI 322 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccc-----cCCCccE
Confidence 45679999999999988888764 45689999999999999999876654 3589999998654321 1357999
Q ss_pred EEeccchhh-----------------h----cCCHHHHHHHHHHHhccccCCcEEEEEecC--hhHHHHHHH
Q 025775 109 VCCFQHLQM-----------------C----FETEERARRLLQNVSSLLKPGGYFLGITPD--SSTIWAKYQ 157 (248)
Q Consensus 109 V~~~~~l~~-----------------~----~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~--~~~~~~~~~ 157 (248)
|+|+--... . -...+..+.++..+.+.|+|||.+++.+.. .+.+.+.+.
T Consensus 323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~ 394 (423)
T PRK14966 323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLA 394 (423)
T ss_pred EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHH
Confidence 999542100 0 011223568888889999999998876433 244444443
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.29 E-value=4.3e-11 Score=84.57 Aligned_cols=103 Identities=24% Similarity=0.262 Sum_probs=80.1
Q ss_pred eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (248)
Q Consensus 34 ~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (248)
+|+|+|||+|..+..++.....+++++|+++.+++.+++..... ...++.+...|+.+... ...+++|+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPP-----EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcc-----ccCCceEEEEEcc
Confidence 48999999999988887755569999999999999887433221 22347888888865432 0256899999988
Q ss_pred chhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 114 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+++. .+....+++.+.+.|+|||.++++
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 76652 667889999999999999999876
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.2e-11 Score=99.13 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.+.+|||+|||.|.....++... ..+++.+|+|..+++.|+.....++... ..++..|+.+.- .++||+|
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v--------~~kfd~I 228 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV--------EGKFDLI 228 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc--------cccccEE
Confidence 45699999999999998888774 4699999999999999999887665321 256677764422 3489999
Q ss_pred EeccchhhhcCCHH-HHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 110 CCFQHLQMCFETEE-RARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 110 ~~~~~l~~~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
+|+--+|.-..... -..+++....+.|++||.+.+..-....+-..+.
T Consensus 229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~ 277 (300)
T COG2813 229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLK 277 (300)
T ss_pred EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHH
Confidence 99988885222221 2458999999999999999988654444444444
No 111
>PRK00811 spermidine synthase; Provisional
Probab=99.28 E-value=4.7e-11 Score=101.18 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhcccCC
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
+.+.+||+||||+|..+..+++. +..+|+++|+++.+++.|++.+...+ ...+++++.+|+.. + +....+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~---l~~~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--F---VAETEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--H---HhhCCC
Confidence 35679999999999998888776 56799999999999999998775321 12458899999743 2 222357
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
+||+|++...-++.....-...++++.+.+.|+|||++++...
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 8999998654333111111247889999999999999998643
No 112
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=9.2e-11 Score=98.99 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|++... .....++.++++|+.... ..++||+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~-------~~~~fD~ 178 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPL-------PGGRFDL 178 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcC-------CCCceeE
Confidence 467899999999999888887763 4689999999999999998876 222235889999984421 2468999
Q ss_pred EEeccchhh------h----------------cCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 109 VCCFQHLQM------C----------------FETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 109 V~~~~~l~~------~----------------~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|++.....- . ....+....+++++.++|+|||.+++.+
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 988421110 0 0123446788999999999999999875
No 113
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.28 E-value=1.9e-10 Score=89.81 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=94.3
Q ss_pred HHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775 19 FAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (248)
Q Consensus 19 ~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (248)
-++-..+.++ ..|+.+++|+|||||..+..|+.. +..+++++|-++++++..++..+..+ ..++..+.+|+.+.
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~--- 96 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEA--- 96 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHh---
Confidence 3444555555 458999999999999999999854 45699999999999998887776655 34588999987442
Q ss_pred hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
+. ...++|.|++..+ ...+.+++.+...|+|||.+++....-+.+...+.
T Consensus 97 --L~-~~~~~daiFIGGg--------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~ 146 (187)
T COG2242 97 --LP-DLPSPDAIFIGGG--------GNIEEILEAAWERLKPGGRLVANAITLETLAKALE 146 (187)
T ss_pred --hc-CCCCCCEEEECCC--------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHH
Confidence 11 1227999988775 23788999999999999999998776665555443
No 114
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.28 E-value=2.6e-11 Score=96.91 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
+..+.||.|+|-|+.+..++..-+..|..+|+.+..++.|++...... ..-..+++..+.+-.. .+++||+|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P------~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTP------EEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccC------CCCcEeEEE
Confidence 357899999999999988877667899999999999999997654411 1225677777644222 247999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+++++.| .+.+++.++++++...|+|+|++++-
T Consensus 128 ~QW~lgh--LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 128 IQWCLGH--LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EES-GGG--S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ehHhhcc--CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 9999988 78999999999999999999999874
No 115
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.27 E-value=2.8e-11 Score=98.48 Aligned_cols=110 Identities=25% Similarity=0.198 Sum_probs=83.7
Q ss_pred hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh--c----C-----CCceEEEEEcCCCCCchh
Q 025775 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--Q----R-----KNFIAEFFEADPCAENFE 96 (248)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~--~----~-----~~~~~~~~~~d~~~~~~~ 96 (248)
..+++.+||..|||.|.++..++..+. +|+|+|+|+.+++.+.+.... . . ...++.++++|+.+.+..
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 355778999999999999999999888 999999999999998554321 0 0 122478999999774431
Q ss_pred hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
..++||+|.-..+++- .+.+......+.+.++|+|||.+++.
T Consensus 113 -----~~g~fD~iyDr~~l~A--lpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 113 -----DVGKFDLIYDRTFLCA--LPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp -----CHHSEEEEEECSSTTT--S-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred -----hcCCceEEEEeccccc--CCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 2357999988877764 56788999999999999999994443
No 116
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.24 E-value=1.2e-10 Score=106.04 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+......+...++.++++|+.+. + ..++||+|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~------~~~~fDlI 210 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I------EKQKFDFI 210 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C------cCCCccEE
Confidence 3468999999999988877665 44699999999999999998876655444588899987431 1 24589999
Q ss_pred Eeccchh--------------h----h-c---CCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 110 CCFQHLQ--------------M----C-F---ETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 110 ~~~~~l~--------------~----~-~---~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
+|+--.. + . + ...+....+++++.++|+|||.+++.+
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 9842100 0 0 0 122345678899999999999998874
No 117
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.22 E-value=1.8e-10 Score=101.65 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||+|.++...+..+..+++++|+|+.+++.|++....++.. .++.++++|+.+. ...+....++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~--l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH--HHHHHhcCCCCCEE
Confidence 57899999999999877666656669999999999999999988776543 3588999998542 11111124589999
Q ss_pred Eeccchh-----hhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 110 CCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 110 ~~~~~l~-----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
++.--.. ...........++..+.++|+|||.++....+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9863210 00011123556677889999999999876443
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.22 E-value=1.9e-10 Score=94.92 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc-c-cCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-E-KANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~-~~~~f 106 (248)
++.+|||+|||+|..+..++.. +.++++++|+++++++.|++.+...+...+++++++|+.+. + +.+. . ..++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L-~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-L-DQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-H-HHHHhCCCCCCC
Confidence 6789999999999877777654 34699999999999999999998877666799999998542 1 1111 1 14689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|++.. ..+.....++.+.+.|+|||++++.
T Consensus 146 D~VfiDa-------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDA-------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECC-------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9997754 2344667889999999999999875
No 119
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.19 E-value=3.8e-10 Score=90.21 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCCCccHhHHH----H---c--C-CCeEEEEeCChHHHHHHHHH-----------------HH--hcC---
Q 025775 31 PYVTVCDLYCGAGVDVDKWE----T---A--L-IANYIGIDVATSGIGEARDT-----------------WE--NQR--- 78 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~----~---~--~-~~~v~giDis~~~l~~a~~~-----------------~~--~~~--- 78 (248)
+..+||..||+||.-.--++ . . + .-+++|+|+|+.+|+.|++- += ..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999996443222 2 1 1 12899999999999999871 10 000
Q ss_pred -----CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 79 -----KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 79 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
....+.|.+.|+.+... ..+.||+|+|-.++.| .+.+...++++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~------~~~~fD~I~CRNVlIY--F~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP------PFGRFDLIFCRNVLIY--FDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGG--S-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCc------ccCCccEEEecCEEEE--eCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01237899999877222 3678999999999998 56888999999999999999999985
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=3.3e-10 Score=97.31 Aligned_cols=101 Identities=11% Similarity=0.015 Sum_probs=75.6
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
.+++.+|||+|||+|..+..++... .+.|+++|+++++++.|+++....+. .++.++++|+..... ...+|
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~------~~~~f 150 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVP------EFAPY 150 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhccc------ccCCc
Confidence 4578899999999999888887653 23799999999999999988766543 347888998754322 23579
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|+|++..+.+. ....+.+.|+|||.+++..
T Consensus 151 D~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence 99998765443 2234567899999988753
No 121
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=2.6e-10 Score=89.45 Aligned_cols=109 Identities=12% Similarity=0.034 Sum_probs=79.0
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..++.+|||+|||+|..+..++... .+++++|+++.+++.+++++... .+++++++|+.+..+ ...+||.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~------~~~~~d~ 80 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDL------PKLQPYK 80 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCc------cccCCCE
Confidence 3467899999999999999998774 58999999999999998887542 248899999977654 2446999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 152 (248)
|++..-.|. ..+.+..++++. .+.++|.+++....++.+
T Consensus 81 vi~n~Py~~---~~~~i~~~l~~~--~~~~~~~l~~q~e~a~rl 119 (169)
T smart00650 81 VVGNLPYNI---STPILFKLLEEP--PAFRDAVLMVQKEVARRL 119 (169)
T ss_pred EEECCCccc---HHHHHHHHHhcC--CCcceEEEEEEHHHhHHh
Confidence 988654442 234455555432 245889998875444433
No 122
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.16 E-value=8.1e-10 Score=92.07 Aligned_cols=110 Identities=20% Similarity=0.259 Sum_probs=78.7
Q ss_pred CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
+.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++.....+ ..++++|+.+... .. ..++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~-~~---~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALP-TA---LRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcc-hh---cCCCEeEEE
Confidence 458999999999998888765 33489999999999999998876654 4688898754211 00 135799999
Q ss_pred eccchh------h------------hc----CCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 111 CFQHLQ------M------------CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 111 ~~~~l~------~------------~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
++--.. . .+ ...+....++..+.++|+|||.+++.+...
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 863111 0 00 112235688899999999999999886543
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=6.1e-10 Score=100.27 Aligned_cols=109 Identities=24% Similarity=0.165 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
++.+|||+|||+|+.+..++.. +.++++|+|+|+.+++.++++....+. .++.++++|+.... .+.+||+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-------~~~~fD~ 321 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-------PEEQPDA 321 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-------cCCCCCE
Confidence 7889999999999988777653 335899999999999999998876653 25889999986532 2468999
Q ss_pred EEec----cchh--------hhcCCHH-------HHHHHHHHHhccccCCcEEEEEecC
Q 025775 109 VCCF----QHLQ--------MCFETEE-------RARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 109 V~~~----~~l~--------~~~~~~~-------~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
|++. ..-+ + ..+.+ ....++.++.+.|+|||+++..+..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRW-KLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred EEEcCCCCCcchhhcCcchhh-cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9852 1111 1 01222 2357899999999999999988543
No 124
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.15 E-value=2.2e-10 Score=92.63 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=73.8
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+.|+.+|||||||+|..+..++.. ....|+++|+.+...+.|++++...+. .++.++++|...... ...+|
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~------~~apf 142 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWP------EEAPF 142 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTG------GG-SE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccc------cCCCc
Confidence 679999999999999988777665 334799999999999999999876542 258999999744221 24689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|.|++..+... .-..+.+.|++||++++.+-
T Consensus 143 D~I~v~~a~~~----------ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVPE----------IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccch----------HHHHHHHhcCCCcEEEEEEc
Confidence 99999876543 22346678999999998643
No 125
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.15 E-value=4.6e-10 Score=106.16 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++....++.. .++.++++|+.+ +... ..++||+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~--~l~~---~~~~fDlI 612 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA--WLKE---AREQFDLI 612 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH--HHHH---cCCCcCEE
Confidence 47899999999999999988877778999999999999999988776543 368999999844 1111 24689999
Q ss_pred Eeccch-------hhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 110 CCFQHL-------QMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 110 ~~~~~l-------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
++.--. ...+....+...++..+.++|+|||.+++...
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 985311 01122345567889999999999999987643
No 126
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=1e-09 Score=98.28 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+|||+|||+|..+..++.... ..++++|+++.+++.++++....+. .+.++++|+.+.... . ..++||.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~--~--~~~~fD~ 316 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQW--W--DGQPFDR 316 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhh--c--ccCCCCE
Confidence 3788999999999999888877633 5899999999999999998876553 367889998653210 0 2467999
Q ss_pred EEeccch------------hhhcCCHH-------HHHHHHHHHhccccCCcEEEEEec
Q 025775 109 VCCFQHL------------QMCFETEE-------RARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 109 V~~~~~l------------~~~~~~~~-------~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|++.... ++ ..+.+ ....++..+.+.|+|||.++.++.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred EEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9853211 01 01222 235789999999999999997753
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.13 E-value=6.5e-10 Score=93.38 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+|||+|||+|+.+..++.. +.+.|+++|+++.+++.++++.+..+. .++.+.+.|+..... ..+.||
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~------~~~~fD 142 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGA------AVPKFD 142 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhh------hccCCC
Confidence 47889999999999999887664 235899999999999999998877653 247888888754222 235699
Q ss_pred EEEecc------chhhh-----cCCHH-------HHHHHHHHHhccccCCcEEEEEec
Q 025775 108 LVCCFQ------HLQMC-----FETEE-------RARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 108 ~V~~~~------~l~~~-----~~~~~-------~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
.|++.. .+..- ..+.+ ...++++++.++|||||+++.++.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 998632 11100 01111 235699999999999999988743
No 128
>PHA03411 putative methyltransferase; Provisional
Probab=99.13 E-value=3.6e-10 Score=94.00 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||+|..+..++... ..+++|+|+|+.|++.++++.. ++.++++|+.+.. ...+||+|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~-------~~~kFDlI 130 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFE-------SNEKFDVV 130 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhc-------ccCCCcEE
Confidence 45789999999998877776542 4589999999999999987642 3778999986532 24689999
Q ss_pred EeccchhhhcCC-HHH---------------HHHHHHHHhccccCCcEEEEE
Q 025775 110 CCFQHLQMCFET-EER---------------ARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~-~~~---------------~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+++-.++..-.. ... ...++.....+|+|+|.+.+.
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 997655541110 011 356778889999999977666
No 129
>PRK01581 speE spermidine synthase; Validated
Probab=99.12 E-value=1.7e-09 Score=93.29 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHH--HH---hcC-CCceEEEEEcCCCCCchhhhhccc
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WE---NQR-KNFIAEFFEADPCAENFETQMQEK 102 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~--~~---~~~-~~~~~~~~~~d~~~~~~~~~~~~~ 102 (248)
+...+||+||||+|..+..+++.+ ..+++++|+++++++.|+.. +. ... ...++.++.+|+.. + +...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--f---L~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--F---LSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--H---HHhc
Confidence 456799999999999888777764 56999999999999999962 11 111 12468899999743 2 2224
Q ss_pred CCceeEEEeccchhhh-cCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 103 ANQADLVCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 103 ~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
.++||+|++...-... ....-...++++.+.+.|+|||++++...
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 5689999987421100 00112246799999999999999988743
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.3e-10 Score=87.99 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=81.5
Q ss_pred HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775 23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (248)
.+++.. ..++.+|||||||+|..+.-++...- +|+.+|+.+...+.|++++...+.. ++.+.++|...-.-
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~------ 134 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP------ 134 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC------
Confidence 344444 55899999999999998877766544 9999999999999999999887642 38999999765332
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
...+||.|++..+.-. +-+.+.+.|++||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~----------vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPE----------VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCC----------CCHHHHHhcccCCEEEEEEc
Confidence 3578999988775433 22345678999999998643
No 131
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.4e-09 Score=91.92 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=83.1
Q ss_pred eEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEec
Q 025775 34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (248)
Q Consensus 34 ~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~ 112 (248)
+|||+|||+|..+..++.... .+|+|+|+|+.+++.|+.....++. .++.+++.|....- .++||+|+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~--------~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL--------RGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc--------CCceeEEEeC
Confidence 799999999999988887744 5999999999999999998887764 44566666764421 3489999985
Q ss_pred cch------hh------------h---cCCHHHHHHHHHHHhccccCCcEEEEEec-Ch-hHHHHHHH
Q 025775 113 QHL------QM------------C---FETEERARRLLQNVSSLLKPGGYFLGITP-DS-STIWAKYQ 157 (248)
Q Consensus 113 ~~l------~~------------~---~~~~~~~~~~l~~~~~~LkpgG~~i~~~~-~~-~~~~~~~~ 157 (248)
--. +. + ....+....++.++.+.|+|||.+++-.- +. ..+.+.+.
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~ 251 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE 251 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence 310 00 0 01234567899999999999999988854 33 44444443
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=1.1e-09 Score=98.17 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+|||+|||+|+.+..++.. +.++++++|+++.+++.++++....+.. .+.+.++|+...+- . ..++||
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~--~---~~~~fD 309 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE--Y---VQDTFD 309 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--h---hhccCC
Confidence 47889999999999988877765 3469999999999999999988776542 47889999865321 1 246799
Q ss_pred EEEeccc---hhhhc--------CCH-------HHHHHHHHHHhccccCCcEEEEEecC
Q 025775 108 LVCCFQH---LQMCF--------ETE-------ERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 108 ~V~~~~~---l~~~~--------~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
.|++..- +...- .+. ....+++.++.+.|+|||+++.++..
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9986321 11100 111 13467899999999999999888544
No 133
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=2.7e-10 Score=91.02 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
....++|||||.|.....+...+..+++.+|.|..|++.++..- . ........++|-...++ .++++|+|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-d--p~i~~~~~v~DEE~Ldf------~ens~DLii 142 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-D--PSIETSYFVGDEEFLDF------KENSVDLII 142 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-C--CceEEEEEecchhcccc------cccchhhhh
Confidence 34679999999999999998889999999999999999887532 1 22456778888766666 689999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHH
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK 155 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~ 155 (248)
++.++|| ..++...+.+++..|||+|.|+.+...++.++..
T Consensus 143 sSlslHW----~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL 183 (325)
T KOG2940|consen 143 SSLSLHW----TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL 183 (325)
T ss_pred hhhhhhh----hccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence 9999998 4457788899999999999999998888777654
No 134
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.10 E-value=1.4e-09 Score=97.46 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+|||+|||+|+.+..++.. +.++++|+|+++.+++.++++....+...++.+..+|....... . ..++||.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~--~--~~~~fD~ 312 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW--A--ENEQFDR 312 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc--c--cccccCE
Confidence 37889999999999999888765 34699999999999999999887766433344466666443210 0 2467999
Q ss_pred EEec------cchhhhc-----CCHH-------HHHHHHHHHhccccCCcEEEEEec
Q 025775 109 VCCF------QHLQMCF-----ETEE-------RARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 109 V~~~------~~l~~~~-----~~~~-------~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|++. ..++..- .+.+ ...+++.++.++|||||.++.++.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9853 2222100 0111 246899999999999999998844
No 135
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.10 E-value=2.8e-09 Score=88.22 Aligned_cols=131 Identities=20% Similarity=0.141 Sum_probs=85.5
Q ss_pred hhHhHHHHHHHHHhcC---CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-------------
Q 025775 15 RLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR------------- 78 (248)
Q Consensus 15 ~~~~~~~~~li~~~~~---~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~------------- 78 (248)
.+..|....+.+.+.+ ++.++||||||+--.-..-+...+.+++..|.++..++..++..+..+
T Consensus 37 ~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~ 116 (256)
T PF01234_consen 37 EILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCE 116 (256)
T ss_dssp HHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHh
Confidence 3455555566666653 567999999998543222222355689999999999887665332210
Q ss_pred ---C-----------CceE-EEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 79 ---K-----------NFIA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 79 ---~-----------~~~~-~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
. ...+ ..+.+|+++.+........+.+||+|++.+++..+..+.+....+++++.++|||||+|+
T Consensus 117 lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 117 LEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp HTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 0 0012 577889887654211000134699999999999999999999999999999999999999
Q ss_pred EE
Q 025775 144 GI 145 (248)
Q Consensus 144 ~~ 145 (248)
+.
T Consensus 197 l~ 198 (256)
T PF01234_consen 197 LA 198 (256)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 136
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=3.1e-09 Score=87.08 Aligned_cols=148 Identities=17% Similarity=0.114 Sum_probs=98.2
Q ss_pred CCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEE
Q 025775 6 IPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAE 84 (248)
Q Consensus 6 ~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~ 84 (248)
++|.++- .+..||-..+-+.-..++..+||+|||+|..+..++.. +...++++|.|+.++..|.+.....+....+.
T Consensus 125 IPRpETE--E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 125 IPRPETE--EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred ecCccHH--HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 5777776 33344444443333446678999999999998888765 55699999999999999998877665555577
Q ss_pred EEEcCCCCCchhhhhcccCCceeEEEeccch--h--------------------hhcCCHHHHHHHHHHHhccccCCcEE
Q 025775 85 FFEADPCAENFETQMQEKANQADLVCCFQHL--Q--------------------MCFETEERARRLLQNVSSLLKPGGYF 142 (248)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l--~--------------------~~~~~~~~~~~~l~~~~~~LkpgG~~ 142 (248)
.++.++....+.+. +...+++|+++|+--. + .-.+..+.+..++.-+.++|+|||.+
T Consensus 203 v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 203 VIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 77665554433321 1146899999885311 1 00122344567788889999999999
Q ss_pred EEEec---ChhHHHHHH
Q 025775 143 LGITP---DSSTIWAKY 156 (248)
Q Consensus 143 i~~~~---~~~~~~~~~ 156 (248)
.+.+. ....+.+..
T Consensus 282 ~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 282 QLELVERKEHSYLVRIW 298 (328)
T ss_pred EEEecccccCcHHHHHH
Confidence 98854 334444433
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.09 E-value=1.2e-09 Score=92.11 Aligned_cols=111 Identities=11% Similarity=0.078 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
.+.+||+||||+|..+..++... ..+++++|+++.+++.|++.+.... ...+++++.+|... .+....++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~-----~l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK-----FLADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH-----HHHhCCCCc
Confidence 45699999999999888777664 5689999999999999998764321 11246777777632 122235789
Q ss_pred eEEEeccchhhhcCCHHH--HHHHHHHHhccccCCcEEEEEecC
Q 025775 107 DLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~--~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
|+|++...... ..... ..++++.+.+.|+|||++++...+
T Consensus 147 DvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 147 DVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred cEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 99988654222 11122 468899999999999999987443
No 138
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=1.7e-09 Score=97.03 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+|||+|||+|+.+..++.. +.+.++++|+++.+++.++++....+.. ++.++++|+....-. .....++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~--~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLEL--KPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccc--cccccccCC
Confidence 37889999999999999888765 3458999999999999999988776532 488999998653210 000246899
Q ss_pred EEEecc------chhhhc-----CCHHH-------HHHHHHHHhccccCCcEEEEEe
Q 025775 108 LVCCFQ------HLQMCF-----ETEER-------ARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 108 ~V~~~~------~l~~~~-----~~~~~-------~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
.|++.. +++.-- .+.++ ..+++.++.++|||||+++.++
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 998632 222100 01111 4688999999999999988664
No 139
>PLN02366 spermidine synthase
Probab=99.08 E-value=1.5e-09 Score=92.83 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=81.6
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcc-cC
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQE-KA 103 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~-~~ 103 (248)
.++..+||+||||.|..+..+++.+ ..+++.+|+++.+++.|++.+...+ ...+++++.+|+.. + +.. ..
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~--~---l~~~~~ 163 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE--F---LKNAPE 163 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--H---HhhccC
Confidence 3467899999999999998887764 4689999999999999999775421 12368999999743 1 111 24
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
++||+|++...-+......--..++++.+.+.|+|||+++..
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 689999986543321111112467899999999999999875
No 140
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=2.6e-09 Score=96.25 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+|||+|||+|..+..++.. +.+.++++|+++.+++.++++....+.. ++.++++|+..... . ..++||
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~--~---~~~~fD 322 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE--K---FAEKFD 322 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--h---hcccCC
Confidence 47789999999999999888765 3469999999999999999888766542 38899999865321 0 136799
Q ss_pred EEEeccchhh--h---------cCCHHH-------HHHHHHHHhccccCCcEEEEEec
Q 025775 108 LVCCFQHLQM--C---------FETEER-------ARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 108 ~V~~~~~l~~--~---------~~~~~~-------~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
+|++...... . ..+..+ ...++.++.++|||||.++.++.
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 9987532100 0 011122 35689999999999999997643
No 141
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.05 E-value=1.6e-09 Score=92.01 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=86.1
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+-++..|||+|||||.++...+.++..+|.|+|.|.-+ +.|.+....++....++++++.+.+..+ +..+.|+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------CccceeE
Confidence 34789999999999998888888898999999977655 8898888887776678999998866544 3589999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
|++-+.-++ +.....++.++-.=-+.|+|||.++
T Consensus 131 IvSEWMGy~-Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYF-LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHH-HHHhhhhhhhhhhhhhccCCCceEc
Confidence 999775554 3335567778888889999999875
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=99.04 E-value=1e-09 Score=89.36 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCCccHhHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
.+.+|||+|||+|.++..++.. ...+++|+|+++.+++.|++... ++.++++|+....+ +++|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-------~~~F 115 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-------DTLF 115 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-------cCCc
Confidence 4679999999999988877653 23489999999999999997643 26789999865332 4689
Q ss_pred eEEEeccchhhh--------cCCHHHHHHHHHHHhccccCCcE
Q 025775 107 DLVCCFQHLQMC--------FETEERARRLLQNVSSLLKPGGY 141 (248)
Q Consensus 107 D~V~~~~~l~~~--------~~~~~~~~~~l~~~~~~LkpgG~ 141 (248)
|+|+++--.+-. .........++..+.+++++|+.
T Consensus 116 DlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 116 DMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999996433210 01123356688888886666664
No 143
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.8e-09 Score=86.16 Aligned_cols=113 Identities=17% Similarity=0.094 Sum_probs=92.8
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+.|+++|||.|.|+|.++..++.. +.++|+..|+.++.++.|++.+...+....+.+...|+.+... +..|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v 164 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV 164 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence 569999999999999999888854 5579999999999999999988876655558888899876544 3489
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
|+|+.- .++.-++++.+.+.|+|||.+++-.|+.+.+.+-+.
T Consensus 165 Dav~LD---------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 165 DAVFLD---------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred CEEEEc---------CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence 999643 344567899999999999999999999887765554
No 144
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.04 E-value=4.3e-09 Score=84.47 Aligned_cols=120 Identities=7% Similarity=-0.001 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhc--CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775 18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (248)
Q Consensus 18 ~~~~~~li~~~~--~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 95 (248)
+-++..+++.+. .++.+|||+|||+|..+..++.....+++++|+++.+++.+++..+..+. .++.++++|+.+.
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~-- 114 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSF-- 114 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHH--
Confidence 333444444432 35789999999999988765566667999999999999999887766543 2588999997431
Q ss_pred hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhc--cccCCcEEEEEecC
Q 025775 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPD 148 (248)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~--~LkpgG~~i~~~~~ 148 (248)
+.....+||+|++.--.+. .....+++.+.. .|+|+|++++..+.
T Consensus 115 ---l~~~~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 115 ---LAQPGTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ---HhhcCCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1112356999988654221 123344555544 48999999988554
No 145
>PLN02476 O-methyltransferase
Probab=99.00 E-value=6e-09 Score=87.37 Aligned_cols=106 Identities=8% Similarity=-0.005 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f 106 (248)
+..+|||||||+|..+..++.. ..+.++++|.+++..+.|++.++..+...+++++.+|+.+ ..+.+. ...++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--SLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcccCCCC
Confidence 5789999999999988888764 2457999999999999999999888776789999999754 111111 123689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|+.-. ........++.+.++|+|||++++.
T Consensus 196 D~VFIDa-------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDA-------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECC-------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9997755 2445778889999999999999987
No 146
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.00 E-value=3.8e-09 Score=85.16 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f 106 (248)
+..+||||||++|..+..++.. ..++++.+|+++...+.|++.+...+...+++++.+|+.+ ..+.+.. ..++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--VLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--HHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--hHHHHHhccCCCce
Confidence 5679999999999999888875 2469999999999999999988877666679999999743 2111211 13689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|+.-..-. .....++.+.++|+|||++++.
T Consensus 123 D~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 123 DFVFIDADKR-------NYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccccc-------chhhHHHHHhhhccCCeEEEEc
Confidence 9998766333 3556777888999999999998
No 147
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.99 E-value=4.7e-09 Score=91.88 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=93.6
Q ss_pred HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-CceEEEEEcCCCCCchhhhhcccC
Q 025775 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEKA 103 (248)
Q Consensus 25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~ 103 (248)
+...+. |.+|||+-|=||+++...+..+.++|+++|+|..+|+.|++.+.-++. ..+..|+++|+.+ +........
T Consensus 212 l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~--~l~~~~~~g 288 (393)
T COG1092 212 LGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK--WLRKAERRG 288 (393)
T ss_pred Hhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH--HHHHHHhcC
Confidence 344455 999999999999999999888888999999999999999998877764 2457899999855 322333345
Q ss_pred CceeEEEecc-----chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 104 NQADLVCCFQ-----HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 104 ~~fD~V~~~~-----~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
.+||+|++-- .-...+.-..+...++..+.++|+|||++++.+...
T Consensus 289 ~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 6999998832 111113335567889999999999999999886555
No 148
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.2e-09 Score=83.61 Aligned_cols=72 Identities=24% Similarity=0.141 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+..|+|+|||||.++...+..+...|+|+|+++++++.+++.... ...++.|+++|+.+ + .+++|.|+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~--~-------~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSD--F-------RGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhh--c-------CCccceEE
Confidence 6778999999999998888888888999999999999999988765 23469999999955 2 56789888
Q ss_pred ecc
Q 025775 111 CFQ 113 (248)
Q Consensus 111 ~~~ 113 (248)
++-
T Consensus 114 mNP 116 (198)
T COG2263 114 MNP 116 (198)
T ss_pred ECC
Confidence 764
No 149
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.99 E-value=1.8e-08 Score=80.43 Aligned_cols=113 Identities=8% Similarity=-0.027 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||++||+|.....+++.+.+.++++|.++.+++.+++.....+...++.++++|+.. ...........||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~--~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR--ALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH--HHHHhhccCCCceEEE
Confidence 58899999999999999998888889999999999999998877666544457899999843 1111111122478887
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
.---... ...+..-..+.+ ...|+++|++++..+.
T Consensus 127 ~DPPy~~--~~~~~~l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 127 LDPPFFN--GALQALLELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred ECcCCCC--CcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence 6432221 112222223322 3578999999887554
No 150
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.98 E-value=9.9e-09 Score=84.76 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=88.8
Q ss_pred HhcCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775 27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
.-+.||.+|||.|.|+|.++..+++. +.++|+..|+.++..+.|++.++..+....+.+.+.|+....+... .+.
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---~~~ 112 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---LES 112 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TT
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---ccC
Confidence 34679999999999999999988865 5579999999999999999999887766679999999976554211 246
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccc-cCCcEEEEEecChhHHHHHHHH
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGITPDSSTIWAKYQK 158 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-kpgG~~i~~~~~~~~~~~~~~~ 158 (248)
.+|.|+.-.- +.-.++..+.+.| ++||.+.+-.|+-+.+.+-...
T Consensus 113 ~~DavfLDlp---------~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~ 158 (247)
T PF08704_consen 113 DFDAVFLDLP---------DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEA 158 (247)
T ss_dssp SEEEEEEESS---------SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHH
T ss_pred cccEEEEeCC---------CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHH
Confidence 8999966442 2335677788899 8999999999998777665543
No 151
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.98 E-value=9.5e-09 Score=85.16 Aligned_cols=96 Identities=26% Similarity=0.267 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
+..+|+|||+|.|..+..++.. +..+++..|+ |.+++.+++ . .++.++.+|+. .++ +. +|++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----~rv~~~~gd~f-~~~-------P~-~D~~ 162 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----DRVEFVPGDFF-DPL-------PV-ADVY 162 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----TTEEEEES-TT-TCC-------SS-ESEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----cccccccccHH-hhh-------cc-ccce
Confidence 5678999999999999988876 4448999998 888888877 2 24999999997 444 34 9999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCC--cEEEEE
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg--G~~i~~ 145 (248)
++...+|. .+.++...+++++++.|+|| |.+++.
T Consensus 163 ~l~~vLh~--~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRHVLHD--WSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEESSGGG--S-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeehhhhh--cchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 99999998 78899999999999999999 999887
No 152
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.97 E-value=1.8e-08 Score=80.76 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
....+||||||.|.++..++.. +-..++|+|++...+..|..+....+. .++.++++|+.. +...+. +++++|.|
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~--~l~~~~-~~~~v~~i 92 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARE--LLRRLF-PPGSVDRI 92 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTT--HHHHHS-TTTSEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHH--HHhhcc-cCCchheE
Confidence 4448999999999999999877 446999999999999999888766542 458999999865 221121 35899999
Q ss_pred Eeccchhhhc----CCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775 110 CCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (248)
Q Consensus 110 ~~~~~l~~~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 152 (248)
...+-=.+.- ...--...+++.+.+.|+|||.+.+.+-+....
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~ 139 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA 139 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 8876322100 000013679999999999999998886665433
No 153
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.96 E-value=6.7e-09 Score=87.70 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCCccHhHHH----Hc----C-CCeEEEEeCChHHHHHHHHHH-H-----------------hc-----C-
Q 025775 32 YVTVCDLYCGAGVDVDKWE----TA----L-IANYIGIDVATSGIGEARDTW-E-----------------NQ-----R- 78 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~----~~----~-~~~v~giDis~~~l~~a~~~~-~-----------------~~-----~- 78 (248)
..+||..||+||.-.-.++ .. . .-+++|+|||+.+|+.|++-. . .. +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999996442222 21 1 127999999999999998721 0 00 0
Q ss_pred ------CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 79 ------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 79 ------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
....+.|.+.|+.+.++. ..+.||+|+|..++.| .+.+....+++++.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliy--F~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIY--FDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhc--CCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 112368888888764331 2478999999999887 46788999999999999999998775
No 154
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.96 E-value=1.5e-08 Score=91.30 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.++.+|||+|||+|.++..++... ..++|+|+|+.|++.|++.....+. .++.++++|+.+.. ......+++||+|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l--~~~~~~~~~fD~V 371 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDF--TDQPWALGGFDKV 371 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhh--hhhhhhcCCCCEE
Confidence 467899999999999988887665 5999999999999999988765543 24899999985421 0000024579999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
++.---. . ....++.+.+ ++|++++++++ |...+.+.+.
T Consensus 372 i~dPPr~----g---~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~ 410 (443)
T PRK13168 372 LLDPPRA----G---AAEVMQALAK-LGPKRIVYVSC-NPATLARDAG 410 (443)
T ss_pred EECcCCc----C---hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHH
Confidence 8754211 1 2344555554 68999888876 5555554444
No 155
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.96 E-value=1.2e-08 Score=85.05 Aligned_cols=124 Identities=20% Similarity=0.253 Sum_probs=85.6
Q ss_pred hhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHH----HcC------CCeEEEEeCChHHHHHHHHH-HH------h
Q 025775 14 HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWE----TAL------IANYIGIDVATSGIGEARDT-WE------N 76 (248)
Q Consensus 14 ~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~----~~~------~~~v~giDis~~~l~~a~~~-~~------~ 76 (248)
..+.+.+...|+..-.....+||-+||+||.-.--++ ... .-+++|+|||..+|+.|+.- +. +
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 3344444433333222246799999999996442222 211 23899999999999999761 11 0
Q ss_pred ------------c--C-------CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhcc
Q 025775 77 ------------Q--R-------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135 (248)
Q Consensus 77 ------------~--~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~ 135 (248)
. + ....+.|.+.|+...++ ..+.||+|+|-.++.| .+.+...+++..++..
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~------~~~~fD~IfCRNVLIY--Fd~~~q~~il~~f~~~ 230 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP------FLGKFDLIFCRNVLIY--FDEETQERILRRFADS 230 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc------ccCCCCEEEEcceEEe--eCHHHHHHHHHHHHHH
Confidence 0 0 01226788888877663 2578999999999998 5688899999999999
Q ss_pred ccCCcEEEEE
Q 025775 136 LKPGGYFLGI 145 (248)
Q Consensus 136 LkpgG~~i~~ 145 (248)
|+|||++++.
T Consensus 231 L~~gG~LflG 240 (268)
T COG1352 231 LKPGGLLFLG 240 (268)
T ss_pred hCCCCEEEEc
Confidence 9999999875
No 156
>PRK03612 spermidine synthase; Provisional
Probab=98.95 E-value=4.8e-09 Score=96.13 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHH--HHHhcC----CCceEEEEEcCCCCCchhhhhccc
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARD--TWENQR----KNFIAEFFEADPCAENFETQMQEK 102 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~--~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~ 102 (248)
+++.+|||||||+|..+..+.+.+. .+++++|+++++++.+++ .+...+ ...+++++.+|..+ + +...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~---l~~~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--W---LRKL 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--H---HHhC
Confidence 4567999999999998888877654 799999999999999998 332211 11358889998743 1 1123
Q ss_pred CCceeEEEeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 103 ANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
+++||+|++...-..... ..-...++++.+.+.|+|||.+++..
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 568999998753322000 01113578999999999999999874
No 157
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=4.4e-09 Score=84.73 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC-CCceEE--EEE-------------------
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-KNFIAE--FFE------------------- 87 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~-~~~~~~--~~~------------------- 87 (248)
.+..+|||||-+|..+..++.. +...+.|+||++..|..|++..+--. ....+. +..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 5678999999999999888776 66789999999999999998543200 000000 000
Q ss_pred -cCCCC-Cch---------hhhhcccCCceeEEEeccchhhhc--CCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 88 -ADPCA-ENF---------ETQMQEKANQADLVCCFQHLQMCF--ETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 88 -~d~~~-~~~---------~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.|..+ ..+ .+.+......||+|.|....-|+. .+.+-+..+++.+.++|.|||+|++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 000 000111457899999976543332 24566899999999999999999986
No 158
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.89 E-value=1.3e-08 Score=86.87 Aligned_cols=119 Identities=20% Similarity=0.193 Sum_probs=86.6
Q ss_pred HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhh
Q 025775 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQ 98 (248)
Q Consensus 21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~ 98 (248)
.+.+.+.. +.+|..|||--||||+.+....-.+. +++|+|++..|++-|+..++.-+. .+..+... |+...++
T Consensus 186 AR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i-~~~~~~~~~Da~~lpl--- 260 (347)
T COG1041 186 ARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI-EDYPVLKVLDATNLPL--- 260 (347)
T ss_pred HHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc-CceeEEEecccccCCC---
Confidence 33444443 45889999999999998877755566 999999999999999987766442 12334444 9988886
Q ss_pred hcccCCceeEEEeccchhhh----cCC-HHHHHHHHHHHhccccCCcEEEEEec
Q 025775 99 MQEKANQADLVCCFQHLQMC----FET-EERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~----~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
...++|.|.+-.-..-. -.. .+-..++++.+.++|++||++++..|
T Consensus 261 ---~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 ---RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ---CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 35579999884311100 011 34478899999999999999999988
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.88 E-value=2.6e-08 Score=89.29 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=75.8
Q ss_pred CCeEEEEcCCCCccHhHHHHcC-----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 32 YVTVCDLYCGAGVDVDKWETAL-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~-----~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+..|||+|||+|-++...+++. ..+|++++-|+.++...+.+...++...+++++++|+.+... +.+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 5789999999998876665543 459999999999998887776666666779999999988765 5699
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
|+|++-..- .|..-+...+.+....+.|||||+++
T Consensus 260 DIIVSElLG--sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 260 DIIVSELLG--SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEE---B--TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeccC--CccccccCHHHHHHHHhhcCCCCEEe
Confidence 999985422 12333356678899999999999875
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.88 E-value=3.1e-08 Score=80.05 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE-cCCCCCchhhhhcccCCcee
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~fD 107 (248)
+..+|||||.+.|..+..++.. + .++++.+|+++++.+.|++.++..+...++..+. +|..+. + +. ...++||
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l-~~--~~~~~fD 134 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-L-SR--LLDGSFD 134 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-H-Hh--ccCCCcc
Confidence 6789999999999988887765 3 4689999999999999999998887767788887 465321 1 11 1468999
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+... ...+...+++.+.++|+|||++++.
T Consensus 135 liFIDa-------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDA-------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 998765 3445788999999999999999987
No 161
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.88 E-value=8e-09 Score=88.99 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|++.....+. .+++|+++|+.+... . ..+.||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~--~---~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT--A---QGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH--h---cCCCCeEEE
Confidence 56899999999999998888765 5999999999999999988876654 358999999844221 1 235799998
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 156 (248)
+.---.. ....+++.+ ..++|++++++++ +...+.+.+
T Consensus 246 ~dPPr~G------~~~~~~~~l-~~~~~~~ivyvsc-~p~t~~rd~ 283 (315)
T PRK03522 246 VNPPRRG------IGKELCDYL-SQMAPRFILYSSC-NAQTMAKDL 283 (315)
T ss_pred ECCCCCC------ccHHHHHHH-HHcCCCeEEEEEC-CcccchhHH
Confidence 7632110 012223323 3367887777663 333343333
No 162
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.86 E-value=9.4e-08 Score=79.48 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
...+||||+||.|..+...... + ...+.-.|.|+..++.+++..+..+...-+.|.++|+++..- +.......+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~---l~~l~p~P~ 211 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS---LAALDPAPT 211 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH---hhccCCCCC
Confidence 5679999999999988776654 2 358999999999999999999888776667999999987432 111245678
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
+++++.... .|.+-+.....++-+.+.+.|||++|.|.
T Consensus 212 l~iVsGL~E-lF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 212 LAIVSGLYE-LFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEEEecchh-hCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 888776444 57766778889999999999999999994
No 163
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.86 E-value=3.6e-08 Score=78.17 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+-||+|......++++.+.|+.+|.++.++...++..+..+...++..+..|+.. ..........+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~--~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK--FLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH--HHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH--HHHhhcccCCCceEEE
Confidence 68999999999999999888999999999999999999999888776655568888888633 1111211367899997
Q ss_pred eccchhhhcCCHHHHHHHHHHHh--ccccCCcEEEEEecCh
Q 025775 111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS 149 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~~~ 149 (248)
+.--... . . ....+++.+. ..|+++|++++-....
T Consensus 120 lDPPY~~--~-~-~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 120 LDPPYAK--G-L-YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp E--STTS--C-H-HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ECCCccc--c-h-HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 7532221 1 1 1356666665 8899999999876554
No 164
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.85 E-value=5.2e-08 Score=77.08 Aligned_cols=131 Identities=19% Similarity=0.231 Sum_probs=82.8
Q ss_pred cccchhhhhHhHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCC--------eEEEEeCChHHHHHHHHHHHh
Q 025775 8 RSELTHHRLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIA--------NYIGIDVATSGIGEARDTWEN 76 (248)
Q Consensus 8 r~~~~~~~~~~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~--------~v~giDis~~~l~~a~~~~~~ 76 (248)
|+....-.++..+...|+... ..++..|||..||+|..+...+.. ... .+.|.|+++.+++.|+.....
T Consensus 4 R~~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 4 RPFFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp TTSSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 443333445555555555544 347889999999999988655433 232 388999999999999998887
Q ss_pred cCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCC----HHHHHHHHHHHhccccCCcEEEEE
Q 025775 77 QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 77 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+....+.+.+.|+.+.++ .++++|+|++..-...-... .+-...+++++.++|++ ..++++
T Consensus 84 ag~~~~i~~~~~D~~~l~~------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELPL------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp TT-CGGEEEEE--GGGGGG------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred cccCCceEEEecchhhccc------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 6666668999999977663 46799999996422211121 22346778899999999 333333
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.84 E-value=1.8e-08 Score=79.28 Aligned_cols=113 Identities=19% Similarity=0.042 Sum_probs=71.6
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
..++.+|||||||+|.....++.. +..+|+.+|.++ .++..+...+.++ ...++.+...|-.+....... ...+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~ 119 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHS 119 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--cccc
Confidence 347889999999999777777666 567999999999 8888877766543 234567777776543211122 3468
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
||+|++.-++.. .+....++..+.++|+++|.+++..+.
T Consensus 120 ~D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 120 FDVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp BSEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CCEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999987664 466788999999999999987777543
No 166
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.84 E-value=2.1e-07 Score=79.79 Aligned_cols=114 Identities=12% Similarity=0.039 Sum_probs=78.3
Q ss_pred hcCCCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHH-hcCCCceEEEEEcCCCCCchhhhhcc
Q 025775 28 YSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (248)
.++++..|+|+|||.|.-+..++.. ....++++|+|.++|+.+.++.. ..-....+.-+++|..+.-- .++.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~--~l~~ 150 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA--WLKR 150 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh--hccc
Confidence 3456779999999999876655443 23479999999999999998887 32222345557887644210 1111
Q ss_pred --cCCceeEEEecc-chhhhcCCHHHHHHHHHHHhc-cccCCcEEEEE
Q 025775 102 --KANQADLVCCFQ-HLQMCFETEERARRLLQNVSS-LLKPGGYFLGI 145 (248)
Q Consensus 102 --~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~-~LkpgG~~i~~ 145 (248)
......+++... ++.+ .+.+....+++++++ .|+|||.|++.
T Consensus 151 ~~~~~~~r~~~flGSsiGN--f~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGN--FSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred ccccCCccEEEEeCccccC--CCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 123456666654 5555 457778999999999 99999998886
No 167
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.83 E-value=4.9e-08 Score=80.83 Aligned_cols=106 Identities=12% Similarity=0.042 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc---cCCc
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ 105 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~ 105 (248)
+..+|||||+++|..+..++.. .-++++.+|++++..+.|++.+...+...+++++++|+.+ ..+.+.. ..++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~L~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VLDQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--HHHHHHhccccCCc
Confidence 5678999999999988877764 2458999999999999999999887777789999998744 1111111 1368
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
||+|+.-.. .......++.+.++|+|||++++.
T Consensus 157 fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999987652 344667788888999999999876
No 168
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.82 E-value=4.8e-08 Score=82.37 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+-|=||+++...+..+..+|+++|.|..+++.|++.+.-++.. .++.|++.|+.+ +...+. ..++||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~--~l~~~~-~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK--FLKRLK-KGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH--HHHHHH-HTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH--HHHHHh-cCCCCCEE
Confidence 58899999999999999888888889999999999999999988766543 468999999854 221222 35699999
Q ss_pred Eec---cchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 110 CCF---QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 110 ~~~---~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
++- ++-. -+.-..+...++..+.++|+|||.+++++.+.
T Consensus 200 IlDPPsF~k~-~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 200 ILDPPSFAKS-KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EE--SSEESS-TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred EECCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 983 2111 12224467789999999999999988764443
No 169
>PLN02672 methionine S-methyltransferase
Probab=98.81 E-value=3.2e-08 Score=96.24 Aligned_cols=111 Identities=18% Similarity=0.091 Sum_probs=79.1
Q ss_pred CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---------------CCceEEEEEcCCCCCch
Q 025775 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---------------KNFIAEFFEADPCAENF 95 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~---------------~~~~~~~~~~d~~~~~~ 95 (248)
+.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+.....++ ...++.++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999888776 34699999999999999988775432 11358999999865321
Q ss_pred hhhhcccCCceeEEEeccch---------------h------h------h-------cCCHHHHHHHHHHHhccccCCcE
Q 025775 96 ETQMQEKANQADLVCCFQHL---------------Q------M------C-------FETEERARRLLQNVSSLLKPGGY 141 (248)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l---------------~------~------~-------~~~~~~~~~~l~~~~~~LkpgG~ 141 (248)
....+||+|+++--. | | . -...+-...++.++.++|+|||.
T Consensus 199 -----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 199 -----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred -----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 012369999884210 0 0 0 01123347889999999999999
Q ss_pred EEEEec
Q 025775 142 FLGITP 147 (248)
Q Consensus 142 ~i~~~~ 147 (248)
+++-+-
T Consensus 274 l~lEiG 279 (1082)
T PLN02672 274 MIFNMG 279 (1082)
T ss_pred EEEEEC
Confidence 998744
No 170
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.78 E-value=5.7e-08 Score=79.35 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=87.4
Q ss_pred CeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
..+||||||.|.++..++... -..++|+++....+..|.++....+.. ++.+++.|+.. +...+. ++++.|-|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~--~l~~~~-~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVE--VLDYLI-PDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHH--HHHhcC-CCCCeeEEEE
Confidence 489999999999999998874 458999999999999999988876642 58889999844 322221 3569999988
Q ss_pred ccchhhh-c---CCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775 112 FQHLQMC-F---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (248)
Q Consensus 112 ~~~l~~~-~---~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~ 154 (248)
.|.=.|- . ...--...+++.+.+.|+|||.+.+.+-+......
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 7632210 0 01112368999999999999999998777654444
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.77 E-value=3.5e-08 Score=83.95 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=63.8
Q ss_pred HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM 99 (248)
Q Consensus 21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (248)
...+++.. ..++.+|||||||+|.++..++... .+++|+|+++.+++.+++++...+...+++++++|+...++
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~---- 99 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF---- 99 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc----
Confidence 33444433 4578899999999999998887765 48999999999999999888654323458999999866443
Q ss_pred cccCCceeEEEecc
Q 025775 100 QEKANQADLVCCFQ 113 (248)
Q Consensus 100 ~~~~~~fD~V~~~~ 113 (248)
..||.|+++.
T Consensus 100 ----~~~d~VvaNl 109 (294)
T PTZ00338 100 ----PYFDVCVANV 109 (294)
T ss_pred ----cccCEEEecC
Confidence 3689887754
No 172
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.77 E-value=9.2e-08 Score=73.03 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD 107 (248)
.+..|||+|.|||.++.++++.+ ...+++++.|++......+++++ +.++.+|+.+..- .+.+ ++..||
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~--~l~e~~gq~~D 119 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRT--TLGEHKGQFFD 119 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHH--HHhhcCCCeee
Confidence 57799999999999999998874 45899999999999999988876 5589999866441 1111 456799
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
.|+|..-+-. -+.....++++.+...|.+||.++-.+..
T Consensus 120 ~viS~lPll~--~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 120 SVISGLPLLN--FPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eEEecccccc--CcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9998665443 45677889999999999999998866433
No 173
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=1.3e-07 Score=70.57 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCCCc-cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~-~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||+|. .+..++..+. +|+++|+++.+++.++... +.+++.|+++.++. .-..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~-----~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLE-----IYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHH-----HHhcCCEE
Confidence 56789999999996 6667776666 9999999999998886652 67899999887763 23578999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
.+.. +..+++..+-++.+.+ |.-+++....+
T Consensus 82 ysir-------pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 82 YSIR-------PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred EEeC-------CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 7654 3444555555555543 44566654443
No 174
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.76 E-value=5.1e-08 Score=80.01 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
...++||||.|.|..+..++. .+.+|+++++|+.|...-+ ..+ . .+.|..+ . .+.+.+||+|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~----~kg----~--~vl~~~~--w----~~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLS----KKG----F--TVLDIDD--W----QQTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHH----hCC----C--eEEehhh--h----hccCCceEEEe
Confidence 346799999999999988855 4568999999999965443 333 2 2223322 1 11356899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|...+-- -.+...+++.+++.|+|+|++++.+
T Consensus 157 cLNvLDR----c~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 157 CLNVLDR----CDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ehhhhhc----cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 9996654 3347789999999999999999883
No 175
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.75 E-value=4.2e-08 Score=80.24 Aligned_cols=96 Identities=14% Similarity=0.024 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceE-EEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA-EFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|||+|||||.++..++..+..+|+|+|+++.|+..... ... ++ .+...|+.......... .-..+|++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~~---~v~~~~~~ni~~~~~~~~~~-d~~~~Dvs 147 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QDE---RVKVLERTNIRYVTPADIFP-DFATFDVS 147 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cCC---CeeEeecCCcccCCHhHcCC-CceeeeEE
Confidence 678999999999999999988878899999999998876221 111 12 23444554322211110 11367766
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
+++.. .++..+.+.|+| |.+++.+
T Consensus 148 fiS~~------------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 148 FISLI------------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred EeehH------------hHHHHHHHHhCc-CeEEEEc
Confidence 55331 247788889999 8777653
No 176
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.75 E-value=7.7e-08 Score=86.45 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.++.+|||+|||+|..+..++... .+|+|+|+++.|++.|++.....+. .++.++++|+.+. .........+||+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~--l~~~~~~~~~~D~v 366 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETV--LPKQPWAGQIPDVL 366 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHH--HHHHHhcCCCCCEE
Confidence 466899999999999998887654 5899999999999999988766543 3589999998431 11111124579999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 156 (248)
++.-.-.. ....+++.+.+ ++|++++++++ +...+.+.+
T Consensus 367 i~dPPr~G------~~~~~l~~l~~-l~~~~ivyvsc-~p~tlard~ 405 (431)
T TIGR00479 367 LLDPPRKG------CAAEVLRTIIE-LKPERIVYVSC-NPATLARDL 405 (431)
T ss_pred EECcCCCC------CCHHHHHHHHh-cCCCEEEEEcC-CHHHHHHHH
Confidence 76432110 02344555443 78988777763 444554444
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.75 E-value=5.6e-07 Score=77.24 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEE-cCCCCCchhhhhcccCCcee
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFE-ADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~-~d~~~~~~~~~~~~~~~~fD 107 (248)
++.+|||||||+|.....++.. ...+++|+|+++.+++.|+.....+ +...++.+.+ .|... +...+....+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA--IFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--hhhcccccCCceE
Confidence 4679999999999776666554 3348999999999999999988877 4555676654 33221 1111111356899
Q ss_pred EEEeccchhh
Q 025775 108 LVCCFQHLQM 117 (248)
Q Consensus 108 ~V~~~~~l~~ 117 (248)
+|+|+--+|-
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999876553
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.74 E-value=4.4e-08 Score=82.65 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=61.5
Q ss_pred HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM 99 (248)
Q Consensus 21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (248)
...+++.. ..++.+|||+|||+|..+..++.... +++|+|+++.|++.++++... .++.++++|+.+.++.
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~--- 102 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS--- 102 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH---
Confidence 33444443 35788999999999999999988765 899999999999999887643 2489999999776542
Q ss_pred cccCCceeEEEecc
Q 025775 100 QEKANQADLVCCFQ 113 (248)
Q Consensus 100 ~~~~~~fD~V~~~~ 113 (248)
+...|.|+++.
T Consensus 103 ---~~~~~~vv~Nl 113 (272)
T PRK00274 103 ---ELQPLKVVANL 113 (272)
T ss_pred ---HcCcceEEEeC
Confidence 11147776654
No 179
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.73 E-value=5.3e-08 Score=77.42 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
+++..|.|+|||.+.++..+. ... .|...|+-+. + -....+|+...++ .+++.|++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~-----------n-----~~Vtacdia~vPL------~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP-----------N-----PRVTACDIANVPL------EDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------S-----TTEEES-TTS-S--------TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccCC-----------C-----CCEEEecCccCcC------CCCceeEE
Confidence 356799999999998764442 223 6999998542 1 2368899988888 57899999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
++-.++.. .+...++.+..|+|||||.+.+.
T Consensus 127 VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 127 VFCLSLMG-----TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp EEES---S-----S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEhhhhC-----CCcHHHHHHHHheeccCcEEEEE
Confidence 87666553 13678999999999999999998
No 180
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.72 E-value=1.7e-07 Score=82.65 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||++||+|.++..++... .+++|+|+++.+++.|++.....+. .++.|+++|+.+... . ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~--~---~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFAT--A---QMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHH--h---cCCCCCEEE
Confidence 56799999999999988887655 5899999999999999988766553 258899999843211 1 124699997
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
+.---. .....+++.+. .++|++++++.+ +...+.+.+.
T Consensus 306 ~DPPr~------G~~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~ 344 (374)
T TIGR02085 306 VNPPRR------GIGKELCDYLS-QMAPKFILYSSC-NAQTMAKDIA 344 (374)
T ss_pred ECCCCC------CCcHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHH
Confidence 754211 11233444443 378998888774 5555555554
No 181
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.1e-08 Score=73.77 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.|.+++|||||+|.+.......+...++|+||++++++.+.+..+... .++.++++|+.++.+ ..+.||.++
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE--vqidlLqcdildle~------~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE--VQIDLLQCDILDLEL------KGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh--hhhheeeeeccchhc------cCCeEeeEE
Confidence 689999999999987756655567789999999999999988766533 236889999977665 468899998
Q ss_pred ecc
Q 025775 111 CFQ 113 (248)
Q Consensus 111 ~~~ 113 (248)
++.
T Consensus 120 iNp 122 (185)
T KOG3420|consen 120 INP 122 (185)
T ss_pred ecC
Confidence 865
No 182
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.70 E-value=1.6e-07 Score=79.20 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+..|||+|||.|.++...+..+.++|.+++. .+|.+.|++....++...++..+.+-+.+..+ +++.|+|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIEL-------PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccC-------chhccEEE
Confidence 67899999999998877777789999999995 56889999998888777788888888866555 67899998
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+-- +.+++.++..++..+. .++.|+|.|.++=+
T Consensus 249 SEP-MG~mL~NERMLEsYl~-Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 249 SEP-MGYMLVNERMLESYLH-ARKWLKPNGKMFPT 281 (517)
T ss_pred ecc-chhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence 754 3445566666766665 45999999988755
No 183
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.70 E-value=1.1e-07 Score=79.72 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=63.5
Q ss_pred HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM 99 (248)
Q Consensus 21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (248)
...+++.. ..++.+|||||||+|..+..++... .+++|+|+++.+++.++++.... .++.++++|+.+.++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~---- 89 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL---- 89 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc----
Confidence 33444443 4578899999999999999998874 48999999999999999877542 248999999976543
Q ss_pred cccCCceeEEEeccch
Q 025775 100 QEKANQADLVCCFQHL 115 (248)
Q Consensus 100 ~~~~~~fD~V~~~~~l 115 (248)
..||.|+++.-.
T Consensus 90 ----~~~d~Vv~NlPy 101 (258)
T PRK14896 90 ----PEFNKVVSNLPY 101 (258)
T ss_pred ----hhceEEEEcCCc
Confidence 247999886543
No 184
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.68 E-value=4.2e-07 Score=75.93 Aligned_cols=86 Identities=10% Similarity=-0.036 Sum_probs=63.2
Q ss_pred HHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 025775 19 FAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (248)
Q Consensus 19 ~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (248)
.+...+++.. ..++.+|||+|||+|..+..++.... .++++|+++.+++.++.+.... .++.++++|+...++.
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~---~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY---ERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC---CcEEEEECchhcCChh-
Confidence 3444455544 34788999999999999999987765 7999999999999998776432 2488999999775542
Q ss_pred hhcccCCcee---EEEeccchh
Q 025775 98 QMQEKANQAD---LVCCFQHLQ 116 (248)
Q Consensus 98 ~~~~~~~~fD---~V~~~~~l~ 116 (248)
.+| +|+++...|
T Consensus 91 -------~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 -------DFPKQLKVVSNLPYN 105 (253)
T ss_pred -------HcCCcceEEEcCChh
Confidence 345 776655433
No 185
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.65 E-value=2.2e-07 Score=79.13 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
-...+|+|.|.|..+..+.. .+.++.+++++...+..++..+. .+ ++.+.+|..+. . .+-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~--------P~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-T--------PKGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-C--------CCcCeEEE
Confidence 36899999999999999888 55589999999999988877764 33 77888888664 2 24579999
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+.+|+ .+.++..++++++.+.|+|||.+++.
T Consensus 243 kWiLhd--wtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 243 KWILHD--WTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred Eeeccc--CChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 999999 88999999999999999999999887
No 186
>PLN02823 spermine synthase
Probab=98.61 E-value=4.4e-07 Score=78.51 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
...+||.||+|.|..+..+++. +..+++.+|+++.+++.|++.+.... ...+++++.+|... + +....++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~---L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA--E---LEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH--H---HhhCCCCc
Confidence 4578999999999988877775 45689999999999999998764321 12468899999744 2 22245789
Q ss_pred eEEEeccchhhhcCCH--HHHHHHHH-HHhccccCCcEEEEEe
Q 025775 107 DLVCCFQHLQMCFETE--ERARRLLQ-NVSSLLKPGGYFLGIT 146 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~--~~~~~~l~-~~~~~LkpgG~~i~~~ 146 (248)
|+|++-..-...-... --..++++ .+.+.|+|||++++..
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9998863111000000 01356787 8999999999998763
No 187
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.59 E-value=2.9e-07 Score=75.10 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
+....|.|+|||.+.++. .-...|..+|+-+. +-..+.+|+.+.++ .+++.|++
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~----------------~~~V~~cDm~~vPl------~d~svDva 232 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV----------------NERVIACDMRNVPL------EDESVDVA 232 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeecC----------------CCceeeccccCCcC------ccCcccEE
Confidence 456789999999987553 32337899997431 14578999999887 58999998
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
++-.++.. .++..++.++.++|++||.+.+.
T Consensus 233 V~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 233 VFCLSLMG-----TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred EeeHhhhc-----ccHHHHHHHHHHHhccCceEEEE
Confidence 66444332 34778999999999999999998
No 188
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.57 E-value=1.7e-07 Score=75.17 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=70.5
Q ss_pred HhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
..+.++..|+|+.||-|.++..++.. ..+.|+++|++|.+++..++....++....+..+++|+.... ....
T Consensus 97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-------~~~~ 169 (200)
T PF02475_consen 97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-------PEGK 169 (200)
T ss_dssp TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-
T ss_pred hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-------Cccc
Confidence 34678999999999999999999873 455899999999999999988877766666889999985422 2578
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~ 142 (248)
+|.|++..- + ....++..+.+++++||++
T Consensus 170 ~drvim~lp-~-------~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 170 FDRVIMNLP-E-------SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEEE--T-S-------SGGGGHHHHHHHEEEEEEE
T ss_pred cCEEEECCh-H-------HHHHHHHHHHHHhcCCcEE
Confidence 999987551 1 1335777788889999876
No 189
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.55 E-value=5.5e-07 Score=72.06 Aligned_cols=113 Identities=14% Similarity=0.201 Sum_probs=77.7
Q ss_pred hHhHHHHHHHHHhcC-CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 025775 16 LYEFAKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94 (248)
Q Consensus 16 ~~~~~~~~li~~~~~-~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (248)
+.+|++......... +..++||+||=+.... ....+.-.|+.||+++.- -...+.|..+-+
T Consensus 35 lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~----------------~~I~qqDFm~rp 96 (219)
T PF11968_consen 35 LVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQH----------------PGILQQDFMERP 96 (219)
T ss_pred HHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCCC----------------CCceeeccccCC
Confidence 446666554333222 3479999999755422 222244479999998621 235666765544
Q ss_pred hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcE-----EEEEecChh
Q 025775 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY-----FLGITPDSS 150 (248)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~-----~i~~~~~~~ 150 (248)
+.. ...++||+|+++.++.| +.+....-+++..+.+.|+|+|. +++.+|.+-
T Consensus 97 lp~---~~~e~FdvIs~SLVLNf-VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 97 LPK---NESEKFDVISLSLVLNF-VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred CCC---CcccceeEEEEEEEEee-CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 421 13578999999999997 45677889999999999999999 888888763
No 190
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1e-06 Score=70.27 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=80.3
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (248)
+.++..|+|||+.+|++++..+.... ..|+|+|+.|--. . ..+.++++|++..+..+.+.+ ...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------~---~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------I---PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------C---CCceEEeeeccCccHHHHHHHHcCCC
Confidence 55899999999999999998877622 3599999976321 1 128899999998765444332 234
Q ss_pred ceeEEEeccch--------hhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHHHH
Q 025775 105 QADLVCCFQHL--------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK 158 (248)
Q Consensus 105 ~fD~V~~~~~l--------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~~ 158 (248)
++|+|+|-++- ++ .....-...+++-+..+|+|||.|++-..-+ +.+...+++
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDH-ARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred CcceEEecCCCCcCCCccccH-HHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 57999986644 11 0112234566777788999999999885544 555555554
No 191
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.51 E-value=6.3e-07 Score=73.67 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=64.5
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+++++.|||+|.|||.++..+...+. .|+++++++.|+....++.++.....+...+++|....++ ..||.
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--------P~fd~ 126 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--------PRFDG 126 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--------cccce
Confidence 56899999999999999999988766 8999999999999999999887766789999999977554 46888
Q ss_pred EEe
Q 025775 109 VCC 111 (248)
Q Consensus 109 V~~ 111 (248)
+++
T Consensus 127 cVs 129 (315)
T KOG0820|consen 127 CVS 129 (315)
T ss_pred eec
Confidence 877
No 192
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=2.4e-06 Score=68.77 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD 107 (248)
...++||||.=||..+..++.. .-++|+++|++++..+.+....+..+...++.++++++.+. +.+.+++ ..++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es-Ld~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES-LDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh-HHHHHhcCCCCcee
Confidence 5689999999999988888765 34699999999999999988877777778899999987542 2222221 357899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.++.-. .........+++.+++|+||++++.
T Consensus 152 faFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence 996644 1333458889999999999999987
No 193
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.49 E-value=1.7e-07 Score=74.15 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcccCC
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~ 104 (248)
++.+||||||++|+++..+.... ...|+|+|+.+.. +.. .+.++++|+.+..-... +.....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------~~~----~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------PLQ----NVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------S-T----TEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------ccc----ceeeeecccchhhHHHhhhhhcccccc
Confidence 34899999999999999998876 5699999998871 011 25666777654322111 211236
Q ss_pred ceeEEEeccchhhh----cC---CHHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHHHH
Q 025775 105 QADLVCCFQHLQMC----FE---TEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK 158 (248)
Q Consensus 105 ~fD~V~~~~~l~~~----~~---~~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~~ 158 (248)
++|+|+|-.+.... .. ..+.....+.-+...|+|||.+++.+... ..+...+..
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~ 154 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR 154 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence 89999998743221 11 12233445556667799999999875544 344444443
No 194
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.49 E-value=9.3e-07 Score=77.94 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
+.+|||++||+|..+..++.. +...|+++|+++.+++.+++..+.++. ..+.+.++|+.. + +.. ..+||+|+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~--~---l~~-~~~fD~V~ 130 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANA--L---LHE-ERKFDVVD 130 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHH--H---Hhh-cCCCCEEE
Confidence 468999999999999888664 555899999999999999987765543 235678888733 1 111 35799997
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~ 154 (248)
+.- ......++....+.+++||++.++.-|...+..
T Consensus 131 lDP--------~Gs~~~~l~~al~~~~~~gilyvSAtD~~~L~g 166 (382)
T PRK04338 131 IDP--------FGSPAPFLDSAIRSVKRGGLLCVTATDTAPLCG 166 (382)
T ss_pred ECC--------CCCcHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence 743 112345667766778999999999666655533
No 195
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.49 E-value=3.1e-06 Score=66.57 Aligned_cols=113 Identities=15% Similarity=0.051 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+.++||+-+|+|......++++...++.+|.+..++...++..+..+...++..+..|+. .+.+... ..++||+|+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L~~~~-~~~~FDlVf 119 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RALKQLG-TREPFDLVF 119 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHHHhcC-CCCcccEEE
Confidence 6899999999999999999999999999999999999999888777665566888999885 2221211 123599998
Q ss_pred eccchhhhcCCHHHHHHHHHH--HhccccCCcEEEEEecCh
Q 025775 111 CFQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~--~~~~LkpgG~~i~~~~~~ 149 (248)
.---.+. ..-+....+.. -...|+|+|.+++-....
T Consensus 120 lDPPy~~---~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 LDPPYAK---GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred eCCCCcc---chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 7554432 12111222333 457799999999875543
No 196
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.6e-06 Score=67.22 Aligned_cols=117 Identities=18% Similarity=0.253 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
...-+||||||+|..+..+++. +...+.++||+|.+++...+....++ .++..++.|+.+ .+ ..++.|+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~-----~l--~~~~VDv 113 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLS-----GL--RNESVDV 113 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHh-----hh--ccCCccE
Confidence 3567999999999988888765 45589999999999999888776654 236677887643 22 2367777
Q ss_pred EEecc---------------chhhh--cCCHHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHH
Q 025775 109 VCCFQ---------------HLQMC--FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKY 156 (248)
Q Consensus 109 V~~~~---------------~l~~~--~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~ 156 (248)
++-+- ...|. -...+-.+.++.++-..|.|.|.|++..... .++.+.+
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l 181 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL 181 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHH
Confidence 64321 00111 1334457888889999999999998885433 4444433
No 197
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.45 E-value=1e-05 Score=67.64 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcC-----CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--CCCc---------
Q 025775 18 EFAKTALIKIYSH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNF--------- 81 (248)
Q Consensus 18 ~~~~~~li~~~~~-----~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~--~~~~--------- 81 (248)
.++...|-..+.+ ...+||-.|||.|+++..++..++ .+.|.|.|--|+-...-.+... ....
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 4455555444431 357899999999999999999988 8999999999986655433210 0000
Q ss_pred ----------------------------eEEEEEcCCCCCchhhhhccc--CCceeEEEeccchhhhcCCHHHHHHHHHH
Q 025775 82 ----------------------------IAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLLQN 131 (248)
Q Consensus 82 ----------------------------~~~~~~~d~~~~~~~~~~~~~--~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 131 (248)
++....+|..+ ..... .++||+|++.+ ..++.+.+-+.++.
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e-----~y~~~~~~~~~d~VvT~F----FIDTA~Ni~~Yi~t 187 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLE-----VYGPDENKGSFDVVVTCF----FIDTAENIIEYIET 187 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEE-----ecCCcccCCcccEEEEEE----EeechHHHHHHHHH
Confidence 11222222211 11111 36899887765 45788889999999
Q ss_pred HhccccCCcEEE
Q 025775 132 VSSLLKPGGYFL 143 (248)
Q Consensus 132 ~~~~LkpgG~~i 143 (248)
|.++|||||+.|
T Consensus 188 I~~lLkpgG~WI 199 (270)
T PF07942_consen 188 IEHLLKPGGYWI 199 (270)
T ss_pred HHHHhccCCEEE
Confidence 999999999765
No 198
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.7e-07 Score=69.96 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=76.0
Q ss_pred HHhcCCCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcC---------CCceEEEEEcCCCCC
Q 025775 26 KIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQR---------KNFIAEFFEADPCAE 93 (248)
Q Consensus 26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~---------~~~~~~~~~~d~~~~ 93 (248)
...+.||.+.||+|+|+|.++..++.. ......|||.-++.++.+++.....- ...++.++++|....
T Consensus 77 ~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 77 DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 334679999999999999988777632 33345999999999999988764321 123467889998664
Q ss_pred chhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.- ...+||.|.|..+. .+..+++...|+|||.+++-
T Consensus 157 ~~------e~a~YDaIhvGAaa----------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 YA------EQAPYDAIHVGAAA----------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CC------ccCCcceEEEccCc----------cccHHHHHHhhccCCeEEEe
Confidence 43 35789999987632 23456677788999998876
No 199
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.43 E-value=1.3e-06 Score=72.61 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=77.7
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCC
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
.+...+||=||-|.|..+..+.+.+ ..+++++|+++.+++.|++.+.... ...+++++..|... .+.....
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~-----~l~~~~~ 148 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK-----FLKETQE 148 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH-----HHHTSSS
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH-----HHHhccC
Confidence 3467899999999999998887765 5799999999999999998665421 12358889998732 2222345
Q ss_pred -ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 105 -QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 105 -~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
+||+|++-..-.......--..++++.+.+.|+|||+++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 899998743211100000114679999999999999999875
No 200
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.43 E-value=1.2e-06 Score=74.37 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=63.1
Q ss_pred HHHHHhc-CCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775 23 ALIKIYS-HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM 99 (248)
Q Consensus 23 ~li~~~~-~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (248)
.+++.+. .++..++|.+||.|+++..++... .+.|+|+|.++.|++.|+++... ..++.++++|..+. ...+
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l--~~~l 84 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNL--KEVL 84 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHH--HHHH
Confidence 3444443 578899999999999999998873 36999999999999999988754 23588999988653 2222
Q ss_pred cccCCceeEEEecc
Q 025775 100 QEKANQADLVCCFQ 113 (248)
Q Consensus 100 ~~~~~~fD~V~~~~ 113 (248)
.....++|.|++..
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 21112788887744
No 201
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.39 E-value=1.7e-06 Score=74.46 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCCccHhHHHH--------cCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcc
Q 025775 31 PYVTVCDLYCGAGVDVDKWET--------ALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~--------~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 101 (248)
++.+|+|.+||+|.++..... .....++|+|+++.++..|+....-.+.. ....+.+.|....+...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~---- 121 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI---- 121 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----
Confidence 567899999999999877765 13448999999999999887654332211 12357788875544310
Q ss_pred cCCceeEEEeccchhhh------c-----------CCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 102 KANQADLVCCFQHLQMC------F-----------ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~------~-----------~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
....||+|++.--+-.. . .....--.++..+.+.|++||.+.+.+|++
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 14689999985322110 0 000112348899999999999998887765
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.37 E-value=4.5e-06 Score=70.42 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=79.2
Q ss_pred CeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC--C-CceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.+||-||-|.|+.+..+.+.. ..+++.+||++..++.+++.+.... . -.+++.+..|..+ .+.....+||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~-----~v~~~~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE-----FLRDCEEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH-----HHHhCCCcCCE
Confidence 599999999999999988874 6799999999999999998775422 1 2457788887633 23333458999
Q ss_pred EEeccchhhhcCCHH--HHHHHHHHHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~--~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|++...=.- .+.+ -..++.+.+++.|+++|+++..
T Consensus 153 Ii~D~tdp~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDPV--GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCCC--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 988542210 1111 1478999999999999999988
No 203
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=4.6e-07 Score=75.04 Aligned_cols=99 Identities=24% Similarity=0.319 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+..++|+|||.|-.+..- +...++|.|++...+..|++.-. .....+|+...+. .+.+||.++
T Consensus 45 ~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~------~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPF------REESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCcCC---CcceeeecchhhhhccccccCCC-------ceeehhhhhcCCC------CCCccccch
Confidence 5889999999999643221 44478999999988877764311 2467888877776 578999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
+..++|+ +.+......+++++.+.|+|||..++..
T Consensus 109 siavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 109 SIAVIHH-LSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 9999998 4567788999999999999999977763
No 204
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.35 E-value=8.3e-06 Score=71.63 Aligned_cols=112 Identities=10% Similarity=0.069 Sum_probs=72.5
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc----------
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---------- 101 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------- 101 (248)
+.+|||++||+|.++..++.. ..+|+|+|+++.+++.|++....++. .++.++++|+.+. .+.+..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~--l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEF--TQAMNGVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHH--HHHHhhcccccccccc
Confidence 357999999999999877654 45999999999999999988766543 2588999998442 111110
Q ss_pred --cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 102 --KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 102 --~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
...+||+|+..-- . ......+++.+.+ |++++++++.. ..+.+.+.
T Consensus 283 ~~~~~~~D~v~lDPP-R-----~G~~~~~l~~l~~---~~~ivyvSC~p-~tlarDl~ 330 (362)
T PRK05031 283 DLKSYNFSTIFVDPP-R-----AGLDDETLKLVQA---YERILYISCNP-ETLCENLE 330 (362)
T ss_pred cccCCCCCEEEECCC-C-----CCCcHHHHHHHHc---cCCEEEEEeCH-HHHHHHHH
Confidence 0125899976432 1 0112344455543 67777776433 55554443
No 205
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.33 E-value=4.6e-06 Score=76.32 Aligned_cols=118 Identities=13% Similarity=0.060 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.+..+||||||.|.++..++.. +-..++|+|++...+..+..+....+. .++.+++.|+.. +...+ +++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~--~~~~~--~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDL--ILNDL--PNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHH--HHHhc--CcccccEE
Confidence 4678999999999999999887 445899999999999888777655442 346677766521 21122 46789999
Q ss_pred Eeccchhhhc----CCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775 110 CCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (248)
Q Consensus 110 ~~~~~l~~~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~ 153 (248)
.+.|.=.|-- ...--...+++.+.+.|+|||.+.+.+-+.+...
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~ 469 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFY 469 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 8877432200 1111236799999999999999998876665443
No 206
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.32 E-value=6.5e-06 Score=73.10 Aligned_cols=128 Identities=19% Similarity=0.231 Sum_probs=97.9
Q ss_pred cchhhhhHhHH-HHHHHHHhcCCCC-eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE
Q 025775 10 ELTHHRLYEFA-KTALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE 87 (248)
Q Consensus 10 ~~~~~~~~~~~-~~~li~~~~~~~~-~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~ 87 (248)
..+...+-.|+ ....|..++.+.. ++|-+|||.-.....+...++..++.+|+|+..++....+.... .....+..
T Consensus 25 ~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~ 102 (482)
T KOG2352|consen 25 SDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVE 102 (482)
T ss_pred CChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEE
Confidence 34444444444 3444555666666 99999999998888887888999999999999999887765422 23478899
Q ss_pred cCCCCCchhhhhcccCCceeEEEeccchhhhcCCHH------HHHHHHHHHhccccCCcEEEEE
Q 025775 88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE------RARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~------~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+....+ .+.+||+|+.-..++.++.+.+ .....+.+++++|++||.++..
T Consensus 103 ~d~~~l~f------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 103 MDMDQLVF------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred ecchhccC------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 99988888 5889999999998887665443 3457889999999999997655
No 207
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.32 E-value=5.6e-06 Score=74.73 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+|||+|||+|+=+..++.. +.+.+++.|+++.-+...++..+..+. .++...+.|.....- . ....||
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~--~---~~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGA--A---LPETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhh--h---chhhcC
Confidence 48899999999999988888765 345899999999999998888776553 236777788654211 1 245799
Q ss_pred EEEe----ccc--hhhh-----cCCH-------HHHHHHHHHHhccccCCcEEEEEecC
Q 025775 108 LVCC----FQH--LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 108 ~V~~----~~~--l~~~-----~~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
.|++ +.. ++.- ..+. ....+++.++.++|||||+++-++..
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9984 321 1110 0111 12368899999999999999877443
No 208
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.32 E-value=1.1e-05 Score=60.68 Aligned_cols=102 Identities=24% Similarity=0.249 Sum_probs=68.5
Q ss_pred EEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--CchhhhhcccC-CceeEE
Q 025775 35 VCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQEKA-NQADLV 109 (248)
Q Consensus 35 VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~-~~fD~V 109 (248)
++|+|||+|... .+..... ..++|+|+++.++..+........ ...+.+...|... .++ .. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-LGLVDFVVADALGGVLPF------EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-CCceEEEEeccccCCCCC------CCCCceeEE
Confidence 999999999855 2222222 378999999999998555443211 0015677777655 333 23 479999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+....++... ....+.++.+.++|+|.+++.....
T Consensus 124 -~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 -ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred -eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5444433222 6788999999999999999886554
No 209
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.31 E-value=3.1e-06 Score=74.35 Aligned_cols=103 Identities=9% Similarity=0.149 Sum_probs=77.0
Q ss_pred CeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+|||+.||+|..+..++.. +...|+++|+++.+++.+++..+.++. .++.+++.|+... +.....+||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~-----l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANV-----LRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHH-----HHHhCCCCCEEE
Confidence 68999999999999988876 567999999999999999988765542 2467888887432 111235799996
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
..- .. ....++..+.+.+++||++.++.-|.
T Consensus 120 lDP-fG-------s~~~fld~al~~~~~~glL~vTaTD~ 150 (374)
T TIGR00308 120 IDP-FG-------TPAPFVDSAIQASAERGLLLVTATDT 150 (374)
T ss_pred eCC-CC-------CcHHHHHHHHHhcccCCEEEEEeccc
Confidence 643 11 12357788888899999999994444
No 210
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.31 E-value=1e-05 Score=65.23 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHH-cCCCeEEEEeCChHHHHHHHHHHHh-------cC-CCceEEEEEc
Q 025775 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWEN-------QR-KNFIAEFFEA 88 (248)
Q Consensus 18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~giDis~~~l~~a~~~~~~-------~~-~~~~~~~~~~ 88 (248)
..+...+-..-+.++...+|||||.|......+. .+....+|+++.+...+.|...... .+ ...++.+.++
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 3344443322355889999999999987765543 3776799999999988777653221 11 1346888999
Q ss_pred CCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+.+.++.... -...|+|+++... | .+++...+.+....||+|..++.+
T Consensus 109 dfl~~~~~~~~---~s~AdvVf~Nn~~---F--~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 109 DFLDPDFVKDI---WSDADVVFVNNTC---F--DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -TTTHHHHHHH---GHC-SEEEE--TT---T---HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CccccHhHhhh---hcCCCEEEEeccc---c--CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 98775543221 1347899887632 2 334555667788889999887754
No 211
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.30 E-value=1.2e-06 Score=76.36 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=86.9
Q ss_pred HhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
.-+.++..++|+|||-|.............++|+|.++-.+..+...........+..++.+|+...++ .++.|
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------edn~f 179 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------EDNTF 179 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC------Ccccc
Confidence 335578899999999999988887777679999999999888777655443333345668888877776 47899
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|.+.+..+..| .++...+++++.++++|||+++.-
T Consensus 180 d~v~~ld~~~~----~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 180 DGVRFLEVVCH----APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CcEEEEeeccc----CCcHHHHHHHHhcccCCCceEEeH
Confidence 99988876655 566888999999999999999864
No 212
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.26 E-value=9.7e-06 Score=70.96 Aligned_cols=112 Identities=11% Similarity=0.065 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-------c--
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-------K-- 102 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~-- 102 (248)
+.+|||++||+|.++..++.. ...|+|+|+++.|++.|++....++. .++.++++|+.+. ...... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~--~~~~~~~~~~~~~~~~ 273 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEF--TQAMNGVREFRRLKGI 273 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHH--HHHHhhcccccccccc
Confidence 347999999999999877655 45999999999999999988766553 2488999998442 111000 0
Q ss_pred ---CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 103 ---ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 103 ---~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
...||+|+..-- .. .....+++.+.+ |+++++++ .+...+.+.+.
T Consensus 274 ~~~~~~~d~v~lDPP-R~-----G~~~~~l~~l~~---~~~ivYvs-C~p~tlaRDl~ 321 (353)
T TIGR02143 274 DLKSYNCSTIFVDPP-RA-----GLDPDTCKLVQA---YERILYIS-CNPETLKANLE 321 (353)
T ss_pred ccccCCCCEEEECCC-CC-----CCcHHHHHHHHc---CCcEEEEE-cCHHHHHHHHH
Confidence 123798866432 11 112344454443 77777776 44455555554
No 213
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.23 E-value=7.5e-07 Score=79.27 Aligned_cols=100 Identities=23% Similarity=0.211 Sum_probs=63.9
Q ss_pred CeEEEEcCCCCccHhHHHHcCCCeEEEE---eCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 33 VTVCDLYCGAGVDVDKWETALIANYIGI---DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~~~~v~gi---Dis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
..+||+|||+|.+...+...+.. ...+ |..+..++.|-+|-- .+.+-.......++ +.+.||+|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleRGv------pa~~~~~~s~rLPf------p~~~fDmv 185 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALERGV------PAMIGVLGSQRLPF------PSNAFDMV 185 (506)
T ss_pred EEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhcCc------chhhhhhccccccC------Cccchhhh
Confidence 36999999999999999887652 2222 333445555544311 01111221233444 68899999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
.|..++.. ....+ ..+|-++-|+|+|||+|+.+.|.
T Consensus 186 Hcsrc~i~--W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 186 HCSRCLIP--WHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hccccccc--chhcc-cceeehhhhhhccCceEEecCCc
Confidence 99886653 11211 35788899999999999999654
No 214
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=8.2e-06 Score=70.28 Aligned_cols=107 Identities=17% Similarity=0.085 Sum_probs=85.1
Q ss_pred HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
+.....+|.+|||+-+|-|.++..++..+...|+++|++|.+++..++...-++....+..+++|+..... ..+
T Consensus 182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------~~~ 255 (341)
T COG2520 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ELG 255 (341)
T ss_pred HHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------ccc
Confidence 34455579999999999999999998887656999999999999999988777766668899999866443 127
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+|-|++.. .....+++....+.+++||++-.-
T Consensus 256 ~aDrIim~~--------p~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 256 VADRIIMGL--------PKSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred cCCEEEeCC--------CCcchhhHHHHHHHhhcCcEEEEE
Confidence 899998765 223556777778888889988766
No 215
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.19 E-value=2.8e-05 Score=73.97 Aligned_cols=131 Identities=16% Similarity=0.081 Sum_probs=85.7
Q ss_pred hHhHHHHHHHHHh--cCCCCeEEEEcCCCCccHhHHHHc-----------------------------------------
Q 025775 16 LYEFAKTALIKIY--SHPYVTVCDLYCGAGVDVDKWETA----------------------------------------- 52 (248)
Q Consensus 16 ~~~~~~~~li~~~--~~~~~~VLDlGcG~G~~~~~l~~~----------------------------------------- 52 (248)
++.-+...++... ..++..++|.+||+|.++...+..
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 3333444444432 246789999999999988655431
Q ss_pred --CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHH
Q 025775 53 --LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ 130 (248)
Q Consensus 53 --~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~ 130 (248)
....++|+|+++.+++.|+......+....+.+.++|+.+.... ...+++|+|+++--...-.....+...+..
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~----~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP----LPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc----cccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 01268999999999999999988777655688999998764331 013579999997432222233344444444
Q ss_pred HHhccc---cCCcEEEEEecChh
Q 025775 131 NVSSLL---KPGGYFLGITPDSS 150 (248)
Q Consensus 131 ~~~~~L---kpgG~~i~~~~~~~ 150 (248)
.+.+.+ .+|+.+++.+++..
T Consensus 329 ~lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 329 QLGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHHhCCCCeEEEEeCCHH
Confidence 444444 48999888777654
No 216
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.19 E-value=1.3e-05 Score=67.66 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
...+|||+|||+|.-+...... ...+++++|.|+.|++.++.............. ..+...... .....|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~------~~~~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRDFL------PFPPDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcccc------cCCCCcE
Confidence 4578999999999644333222 456899999999999999887654321111111 111110000 1223499
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHHHhH
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~~~~ 160 (248)
|++.+++-.+. + .....+++++.+.+.+ ++++. ++.+...+...++.+
T Consensus 106 vi~s~~L~EL~-~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 106 VIASYVLNELP-S-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQL 156 (274)
T ss_pred EEEehhhhcCC-c-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHH
Confidence 99999998743 3 6788888988888766 77777 555556666666544
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.18 E-value=1.6e-05 Score=73.28 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC---------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL---------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~---------~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (248)
...+|||.|||+|.++..++... ...++|+|+++.++..++..+...+ .......+.|.....+.. ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~-~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLN-IES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccc-ccc
Confidence 34689999999999998776431 1378999999999999988765543 122344445433211110 001
Q ss_pred cCCceeEEEec
Q 025775 102 KANQADLVCCF 112 (248)
Q Consensus 102 ~~~~fD~V~~~ 112 (248)
..+.||+|+++
T Consensus 109 ~~~~fD~IIgN 119 (524)
T TIGR02987 109 YLDLFDIVITN 119 (524)
T ss_pred ccCcccEEEeC
Confidence 23579999885
No 218
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.16 E-value=5.7e-06 Score=64.00 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=52.0
Q ss_pred eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc-eeEEEec
Q 025775 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ-ADLVCCF 112 (248)
Q Consensus 34 ~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-fD~V~~~ 112 (248)
.|+|+.||.|+.+..++... .+|+++|+++..++.|+...+--+...++.++++|..+. .... .... +|+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~--~~~~--~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL--LKRL--KSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH--GGGB--------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH--Hhhc--cccccccEEEEC
Confidence 69999999999999998874 489999999999999998887766556799999998542 1111 1122 8999874
No 219
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=2.1e-05 Score=61.37 Aligned_cols=110 Identities=18% Similarity=0.064 Sum_probs=70.8
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhcc--cC
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQE--KA 103 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~--~~ 103 (248)
+.|+.+|||+||.+|.+++-..+. +.+.+.|+|+-.- .+..+ +.++++ |++++.....+.+ ++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~G----a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEG----ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCC----cccccccccCCHHHHHHHHHhCCC
Confidence 358999999999999998766554 5568999998542 12223 556666 7776543222211 46
Q ss_pred CceeEEEeccchhhhcCCHHH-------HHHHHHHHhccccCCcEEEEEecChh
Q 025775 104 NQADLVCCFQHLQMCFETEER-------ARRLLQNVSSLLKPGGYFLGITPDSS 150 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~~~~~LkpgG~~i~~~~~~~ 150 (248)
.+.|+|++.++-.-.-....+ -.+++--....++|+|.|++-+.++.
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 789999987644211111111 22344445667789999999977773
No 220
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.14 E-value=2.9e-05 Score=62.60 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.+|.+||-||.++|...+.+..- .-+.|.+++.|+.+....-...+... ++--+-.|+..+.-... .-+..|
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~P~~Y~~---lv~~VD 145 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARHPEKYRM---LVEMVD 145 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTSGGGGTT---TS--EE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCChHHhhc---cccccc
Confidence 48999999999999998888765 35689999999977654433332222 26678889876543222 235899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|++.-+. .++.+-++.|+...||+||.+++.
T Consensus 146 vI~~DVaQ------p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 146 VIFQDVAQ------PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEEE-SS------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCCC------hHHHHHHHHHHHhhccCCcEEEEE
Confidence 99876532 345777899999999999999987
No 221
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.5e-05 Score=66.14 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=59.5
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..++..|||||+|.|.++..++.... .|+++++++.+++..+++.... .+++.+++|+...++... ..++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l-----~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSL-----AQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhh-----cCCCE
Confidence 45789999999999999999988776 7999999999999988886522 348999999988776311 05677
Q ss_pred EEec
Q 025775 109 VCCF 112 (248)
Q Consensus 109 V~~~ 112 (248)
|+++
T Consensus 99 vVaN 102 (259)
T COG0030 99 VVAN 102 (259)
T ss_pred EEEc
Confidence 7653
No 222
>PRK00536 speE spermidine synthase; Provisional
Probab=98.12 E-value=2e-05 Score=65.79 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+...+||=||.|-|+.+..+++.+. +|+.+||++.+++.+++.++... ...+++++.. +. ....++|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~------~~---~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ------LL---DLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh------hh---hccCCcC
Confidence 3568999999999999999988864 99999999999999998554311 1123555431 11 1123689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|++-.. . ...+.+.+++.|+|||+++..
T Consensus 141 DVIIvDs~-----~----~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 141 DLIICLQE-----P----DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CEEEEcCC-----C----ChHHHHHHHHhcCCCcEEEEC
Confidence 99987642 1 256778999999999999987
No 223
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=3.6e-05 Score=63.49 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=85.2
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+.||.+|||-|.|+|.++..+++. +.+++..+|+...-.+.|.+.++.++....+.+.+.|+....+.. +...+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~a 178 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLKA 178 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----ccccc
Confidence 669999999999999999988776 567999999999999999999999888888999999998877632 35789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecChhHHH
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSSTIW 153 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~~~~~ 153 (248)
|.|+...-- .-.++--+.++||.+| ++....|+-+.+.
T Consensus 179 DaVFLDlPa---------Pw~AiPha~~~lk~~g~r~csFSPCIEQvq 217 (314)
T KOG2915|consen 179 DAVFLDLPA---------PWEAIPHAAKILKDEGGRLCSFSPCIEQVQ 217 (314)
T ss_pred ceEEEcCCC---------hhhhhhhhHHHhhhcCceEEeccHHHHHHH
Confidence 999654422 2234444555777766 5655566655444
No 224
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.08 E-value=2.9e-05 Score=64.56 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=69.6
Q ss_pred CeEEEEcCC--CCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCCce
Q 025775 33 VTVCDLYCG--AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (248)
Q Consensus 33 ~~VLDlGcG--~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f 106 (248)
.-.|||||| |-.....+++. +-++|+.+|.+|..+..++..+..... ....++++|+.+..- .+. ...+-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~--iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA--ILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH--HHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH--HhcCHHHHhcC
Confidence 359999999 45566667654 567999999999999999998776542 247899999987431 111 011223
Q ss_pred e-----EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 107 D-----~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
| .|++...+|++ ...++...++..+...|.||++++++..
T Consensus 147 D~~rPVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp -TTS--EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 3 45566778863 4456789999999999999999999933
No 225
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.06 E-value=6.3e-05 Score=59.64 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=71.3
Q ss_pred HhcCCCC-eEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775 27 IYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 27 ~~~~~~~-~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
.+++... +++|||+|.|--...++-. +..+++.+|.+..-+...+.-....+. .++..++..+.+. ....
T Consensus 43 ~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~-------~~~~ 114 (184)
T PF02527_consen 43 PFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEP-------EYRE 114 (184)
T ss_dssp GCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHT-------TTTT
T ss_pred hhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeeccc-------ccCC
Confidence 3344444 8999999999777766544 445899999998876665554444332 1388888876441 1468
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+||+|++-.+. .+..+++-+...+++||.+++.
T Consensus 115 ~fd~v~aRAv~--------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 115 SFDVVTARAVA--------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -EEEEEEESSS--------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred CccEEEeehhc--------CHHHHHHHHHHhcCCCCEEEEE
Confidence 99999887632 2567888899999999998887
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.05 E-value=8.1e-05 Score=56.47 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCCccHhHHHH-----cCCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhccc
Q 025775 30 HPYVTVCDLYCGAGVDVDKWET-----ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK 102 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~-----~~~~~v~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~ 102 (248)
.+...|+|+|||.|.++..++. ....+|+|+|.++..++.+..+..... ...+..+.+++..+.. .
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-------S 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------c
Confidence 4678999999999999988887 544599999999999999888776543 2223455555442211 1
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (248)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 150 (248)
....++++ ++|- ..+. .+.+++...+ ++-.+++..|...
T Consensus 97 ~~~~~~~v---gLHa-CG~L--s~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 97 SDPPDILV---GLHA-CGDL--SDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred cCCCeEEE---Eeec-ccch--HHHHHHHHHH---cCCCEEEEcCCcc
Confidence 34456665 4553 2222 3344444443 6666777667653
No 227
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.04 E-value=0.00015 Score=63.10 Aligned_cols=136 Identities=17% Similarity=0.120 Sum_probs=90.9
Q ss_pred hHhHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCC---------------------------------C------
Q 025775 16 LYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------A------ 55 (248)
Q Consensus 16 ~~~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------~------ 55 (248)
++.-+...++... -.++..++|.-||+|.++...+.... +
T Consensus 175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 4444444444433 23567899999999998866544321 1
Q ss_pred -eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHH----HHHHHHH
Q 025775 56 -NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE----RARRLLQ 130 (248)
Q Consensus 56 -~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~----~~~~~l~ 130 (248)
.++|+|+++.+++.|+......+....+.|.++|+....- +...+|+|+|+--...=+.+.. -...+.+
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 3779999999999999999888877789999999976432 2268999999642111112222 2345666
Q ss_pred HHhccccCCcEEEEEecChhHHHHHHH
Q 025775 131 NVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 131 ~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
.+++.++.-+.+++++...-.....++
T Consensus 329 ~lk~~~~~ws~~v~tt~e~~~~~~~~r 355 (381)
T COG0116 329 TLKRLLAGWSRYVFTTSEDLLFCLGLR 355 (381)
T ss_pred HHHHHhcCCceEEEEccHHHHHHHhhh
Confidence 777888888888888665544443333
No 228
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.96 E-value=1.1e-05 Score=65.22 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH-HhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW-ENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.+.+|||-|.|-|..+...+..+..+|..++.+++.|+.|.-.- ...-....++.+.+|+.+ +-+.+ .+.+||+|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--~V~~~--~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--VVKDF--DDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--HHhcC--CccccceE
Confidence 68999999999999999888888889999999999999876421 000011136888998743 21112 47789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+-.- .....-+.--..++-.+++++|+|||.++=-
T Consensus 210 iHDP-PRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 210 IHDP-PRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred eeCC-CccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 6421 0001112223678999999999999998743
No 229
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.95 E-value=0.00015 Score=58.46 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=75.0
Q ss_pred EEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775 35 VCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (248)
Q Consensus 35 VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (248)
|+||||-.|.....+...+. ..++++|+++..++.|++.....+...++.+..+|-.+. +. +....|.|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~-----~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LK-----PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cC-----CCCCCCEEEEec
Confidence 68999999999999988765 479999999999999999998877777799999985331 21 122378776655
Q ss_pred chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh-hHHHHHHHH
Q 025775 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKYQK 158 (248)
Q Consensus 114 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~~~~ 158 (248)
+ ....+..++++....++....|++.-.+. ..+++-+.+
T Consensus 75 M------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~ 114 (205)
T PF04816_consen 75 M------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE 114 (205)
T ss_dssp E-------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH
T ss_pred C------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH
Confidence 2 34457788888888887776777764443 444444443
No 230
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=6.9e-05 Score=60.88 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.++..+||+|+.||+++..+.+.+.+.|+|+|.....+..- ++... .-+.+...|+....... -.+..|++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~d~--rV~~~E~tN~r~l~~~~----~~~~~d~~ 148 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRNDP--RVIVLERTNVRYLTPED----FTEKPDLI 148 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---HhcCC--cEEEEecCChhhCCHHH----cccCCCeE
Confidence 38899999999999999999999999999999998776532 22211 11344455554433211 13478899
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
+|--++.. +..++..+..+++|+|.++..+-
T Consensus 149 v~DvSFIS-------L~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 149 VIDVSFIS-------LKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred EEEeehhh-------HHHHHHHHHHhcCCCceEEEEec
Confidence 88775543 77889999999999998887633
No 231
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.87 E-value=0.00024 Score=59.63 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCCccHhHHHHc--C-CCeEEEEeCChHHHHHHHHHHH-hcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 32 YVTVCDLYCGAGVDVDKWETA--L-IANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~--~-~~~v~giDis~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
..+|+=||||.=-++.-+... . ...++++|+++.+++.+++... ..+...++.|+.+|..+... .-..||
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------dl~~~D 194 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------DLKEYD 194 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------G----S
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------ccccCC
Confidence 359999999986655544432 2 3479999999999999988766 22334458999999865432 235899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+|+...... .+.+.-.+++.++.+.++||+.++.-..++
T Consensus 195 vV~lAalVg---~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 195 VVFLAALVG---MDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp EEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred EEEEhhhcc---cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 997655322 245567889999999999999999875444
No 232
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.85 E-value=0.00014 Score=54.75 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=58.8
Q ss_pred eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhh-------cCCHHHHHHH
Q 025775 56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------FETEERARRL 128 (248)
Q Consensus 56 ~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-------~~~~~~~~~~ 128 (248)
+|+|+||.+++|+.++++....+...++.++..+-.. +...++ .++.|+|+- .+.|. ....+....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~--~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIP--EGPVDAAIF--NLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT----S--EEEEEE--EESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCc--cCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHH
Confidence 5899999999999999999887655578999887643 433332 258998854 33332 3335567889
Q ss_pred HHHHhccccCCcEEEEEecC
Q 025775 129 LQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 129 l~~~~~~LkpgG~~i~~~~~ 148 (248)
++.+.+.|+|||++.+..-.
T Consensus 75 l~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHHhhccCCEEEEEEeC
Confidence 99999999999999988443
No 233
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=6.7e-05 Score=67.16 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
++.+|||+-||.|.++..++. ...+|+|+|+++++++.|++..+.++.. ++.|..+++.+... ... ....+|.|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~--~~~-~~~~~d~Vv 367 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTP--AWW-EGYKPDVVV 367 (432)
T ss_pred CCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhh--hcc-ccCCCCEEE
Confidence 678999999999999999974 4559999999999999999988777643 38999998754222 111 135789996
Q ss_pred eccchhhhcCCHHHHH-HHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 111 CFQHLQMCFETEERAR-RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~-~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
..--= .-+. .+++.+. .++|-.+++++ .|...+.+.+.
T Consensus 368 vDPPR-------~G~~~~~lk~l~-~~~p~~IvYVS-CNP~TlaRDl~ 406 (432)
T COG2265 368 VDPPR-------AGADREVLKQLA-KLKPKRIVYVS-CNPATLARDLA 406 (432)
T ss_pred ECCCC-------CCCCHHHHHHHH-hcCCCcEEEEe-CCHHHHHHHHH
Confidence 53311 1122 4444444 45777777776 45556665554
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.84 E-value=0.00092 Score=56.13 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=63.6
Q ss_pred hHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775 18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (248)
Q Consensus 18 ~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (248)
..+-..+++.. ..++..|||+|+|+|.++..++... ++++++|+++.+++..++++... .+++++.+|+...+..
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccH
Confidence 34444444544 3478999999999999999998877 69999999999999988877632 2489999999876653
Q ss_pred hhhcccCCceeEEEec
Q 025775 97 TQMQEKANQADLVCCF 112 (248)
Q Consensus 97 ~~~~~~~~~fD~V~~~ 112 (248)
..+ ......|+++
T Consensus 92 ~~~---~~~~~~vv~N 104 (262)
T PF00398_consen 92 DLL---KNQPLLVVGN 104 (262)
T ss_dssp GHC---SSSEEEEEEE
T ss_pred Hhh---cCCceEEEEE
Confidence 211 2344555554
No 235
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00079 Score=53.43 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+||=||..+|...+....- +.+.+.|++.|+.+....-....... ++--+..|+..+.-...+ -+..|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---Ni~PIL~DA~~P~~Y~~~---Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---NIIPILEDARKPEKYRHL---VEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---CceeeecccCCcHHhhhh---cccccE
Confidence 48999999999999999888775 44679999999998766544444332 255677887664432222 356899
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE--------ecChhHHHHHH
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI--------TPDSSTIWAKY 156 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~--------~~~~~~~~~~~ 156 (248)
|.+--+ ...+.+=+..|+...|++||++++. +-++..+.+.-
T Consensus 149 iy~DVA------Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~e 198 (231)
T COG1889 149 IYQDVA------QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDE 198 (231)
T ss_pred EEEecC------CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHH
Confidence 976442 2445777889999999999987766 34445555533
No 236
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0006 Score=57.52 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh--cCCCceE-EEEEcCCCCC---------------
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QRKNFIA-EFFEADPCAE--------------- 93 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~--~~~~~~~-~~~~~d~~~~--------------- 93 (248)
..+||-.|||.|+++..++..++ .+-|=+.|--|+-...-.+.. ......+ .|++.-....
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 56899999999999999988877 566778887777543322211 0000001 1121111100
Q ss_pred ----------------chhhhhc--ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775 94 ----------------NFETQMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (248)
Q Consensus 94 ----------------~~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 144 (248)
+|.+... ...+.||+|+.-+ ..++....-+.+..|.+.|+|||+.+=
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf----FIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF----FIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEE----EeechHHHHHHHHHHHHhccCCcEEEe
Confidence 0111110 1235699875544 456788888999999999999998873
No 237
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00098 Score=58.41 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=80.7
Q ss_pred HHHHHHhcC--CCCeEEEEcCCCCccHhHHHHcC---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775 22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (248)
Q Consensus 22 ~~li~~~~~--~~~~VLDlGcG~G~~~~~l~~~~---~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (248)
+.+....+. ||.+|||++++.|+=+..++... ...|+++|+++.-+...+.+....+... +...+.|.....-.
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~ 223 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAEL 223 (355)
T ss_pred HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccccccccc
Confidence 444444433 88999999999999888777652 2357999999999988888877766422 56777776432210
Q ss_pred hhhcccCCceeEEEecc------chh------hhcCCH-------HHHHHHHHHHhccccCCcEEEEEec
Q 025775 97 TQMQEKANQADLVCCFQ------HLQ------MCFETE-------ERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 97 ~~~~~~~~~fD~V~~~~------~l~------~~~~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
.. ..++||.|.+-. +++ +. .+. .-..+++....+.|||||.++-++.
T Consensus 224 --~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~-~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 224 --LP-GGEKFDRILLDAPCSGTGVIRRDPDVKWR-RTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred --cc-ccCcCcEEEECCCCCCCcccccCcccccc-CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 00 123699987632 221 10 111 2246789999999999999998844
No 238
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.70 E-value=4.9e-05 Score=60.84 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
....|+|..||.|+.+..++.... .|+++|++|.-|..|+...+--+...++.|+++|..+ ....++-....+|+|.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld--~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD--LASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH--HHHHHhhhhheeeeee
Confidence 456799999999999988877766 8999999999999999888777777789999999854 3323322233466776
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCC
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPG 139 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 139 (248)
.+... ...+....-+-.+...+.|.
T Consensus 171 ~sppw----ggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 171 LSPPW----GGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred cCCCC----CCcchhhhhhhhhhhhcchh
Confidence 54422 22333333344444455544
No 239
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.70 E-value=0.00021 Score=61.48 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
..++.++|||||++|+++..+...+. .|+++|..+-. ...... .++...+.|...... ..+.+|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~~---~~V~h~~~d~fr~~p------~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMDT---GQVEHLRADGFKFRP------PRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhCC---CCEEEEeccCcccCC------CCCCCCE
Confidence 35899999999999999999998887 99999955421 122222 248888888755321 1567999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCC--cEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg--G~~i~~ 145 (248)
++|-.+.. ...+.+-+.+.|..| ..+|++
T Consensus 274 vVcDmve~--------P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 274 LVCDMVEK--------PARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred EEEecccC--------HHHHHHHHHHHHhcCcccEEEEE
Confidence 99977422 233444444555443 345555
No 240
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.64 E-value=1.6e-05 Score=63.01 Aligned_cols=94 Identities=19% Similarity=0.312 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+.++||||.|.|..+..++. .+.+|.++++|..|+...+.+ + +++ +-..+-.+ .+-++|+|+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr~rL~kk----~--ynV-l~~~ew~~---------t~~k~dli~ 174 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMRDRLKKK----N--YNV-LTEIEWLQ---------TDVKLDLIL 174 (288)
T ss_pred CCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHHHHHhhc----C--Cce-eeehhhhh---------cCceeehHH
Confidence 457999999999998877643 344799999999998876543 1 111 11111111 234799999
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccC-CcEEEEE
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI 145 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~~i~~ 145 (248)
|...+.-++. .-++++.++.+|+| +|..++.
T Consensus 175 clNlLDRc~~----p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLDRCFD----PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhhcC----hHHHHHHHHHHhccCCCcEEEE
Confidence 9887765444 56789999999999 8887776
No 241
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.61 E-value=0.00013 Score=52.36 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=43.2
Q ss_pred EEEcCCCCccHhHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 36 CDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 36 LDlGcG~G~~~~~l~~~----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
||+|+..|..+..++.. ...+++++|..+. .+.+.+..+..+...++.+++++..+ ..+.+ ..+++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~~--~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD--FLPSL--PDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THH--HHHHH--HH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH--HHHHc--CCCCEEEEEE
Confidence 68999999888777654 1137999999995 22222222222223358999998733 22222 2478999987
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
-.. | ..+.....++.+.+.|+|||++++.
T Consensus 76 Dg~-H----~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGD-H----SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCC-C----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 652 2 2355777899999999999999874
No 242
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.59 E-value=0.0005 Score=60.22 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=43.2
Q ss_pred CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC
Q 025775 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC 91 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~ 91 (248)
..|||+-||.|.++..++.. ..+|+|+|+++++++.|+.....++. .+++|+.+++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~ 254 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAE 254 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SH
T ss_pred CcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeecc
Confidence 48999999999999998654 45999999999999999988776553 35889887763
No 243
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.59 E-value=0.00028 Score=55.63 Aligned_cols=106 Identities=20% Similarity=0.091 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+.+|||+|+|+|--+...+..+.+.|+..|+.|..+...+-....++ ..+.+...|+.. .+..||++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~~g---------~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADLIG---------SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccccC---------CCcceeEEE
Confidence 589999999999987777777788899999999877666554444443 447888888744 256899998
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecChhHH
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSSTI 152 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~~~~ 152 (248)
....+ .+......++. ....|+..| .+++..|....+
T Consensus 148 agDlf----y~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 148 AGDLF----YNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred eecee----cCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence 87743 34555667777 555554444 455445554333
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.51 E-value=0.0036 Score=50.46 Aligned_cols=120 Identities=10% Similarity=-0.004 Sum_probs=85.6
Q ss_pred HHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775 25 IKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (248)
Q Consensus 25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 103 (248)
+..+++.+.+++||||-.|.+...+... ....+++.|+++..++.|.+.+...+...++....+|... .+. .+
T Consensus 10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~-----~~ 83 (226)
T COG2384 10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLE-----LE 83 (226)
T ss_pred HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccC-----cc
Confidence 4556667788999999999988888776 4568999999999999999999888776667777777632 221 34
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHH
Q 025775 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~ 157 (248)
..+|+|+..+. ....+..++++-...|+.=-.+++. |+. ..+++-+.
T Consensus 84 d~~d~ivIAGM------GG~lI~~ILee~~~~l~~~~rlILQ-Pn~~~~~LR~~L~ 132 (226)
T COG2384 84 DEIDVIVIAGM------GGTLIREILEEGKEKLKGVERLILQ-PNIHTYELREWLS 132 (226)
T ss_pred CCcCEEEEeCC------cHHHHHHHHHHhhhhhcCcceEEEC-CCCCHHHHHHHHH
Confidence 57898876552 3444777888877777755456554 544 44444443
No 245
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.48 E-value=0.00039 Score=52.50 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=45.6
Q ss_pred eEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 025775 34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA 92 (248)
Q Consensus 34 ~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (248)
.|||+|||.|..+..++.... .+++++|+++.+++.+++.+..++.. ++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999888877654 38999999999999998887765432 37777777644
No 246
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.01 Score=48.66 Aligned_cols=108 Identities=20% Similarity=0.181 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
.+...+|+|+|+..-+..+... ...+++.+|+|...++.........-....+.-+++|... .+. ..++.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La----~~~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALA----ELPRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHh----cccCC
Confidence 4788999999998766555443 2358999999999997654433332223345556666421 121 11222
Q ss_pred -eeE-EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 -ADL-VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 -fD~-V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
--+ ++...++.+ .+++....++.++...|+||-+|++.
T Consensus 153 ~~Rl~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 153 GRRLFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred CeEEEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEEe
Confidence 222 233344554 56788999999999999999999876
No 247
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.0012 Score=53.36 Aligned_cols=98 Identities=20% Similarity=0.121 Sum_probs=66.8
Q ss_pred CCeEEEEcCCCCccHhHHH-HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc-eeEE
Q 025775 32 YVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ-ADLV 109 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~-~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-fD~V 109 (248)
+.+++|||+|.|--...++ ..+..+++-+|....-+..-+.-....+. .++.++++.+.+ +. .... ||+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~--~~-----~~~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEE--FG-----QEKKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhh--cc-----cccccCcEE
Confidence 5899999999998777765 23444799999988765554444333331 237788877643 31 1223 9999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
++-. ...+..+++-+...+++||.+++.
T Consensus 140 tsRA--------va~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 140 TSRA--------VASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred Eeeh--------ccchHHHHHHHHHhcccCCcchhh
Confidence 8865 223677888889999999987644
No 248
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.43 E-value=0.00038 Score=55.80 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc--C
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--A 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~ 103 (248)
++..|+|+|.-.|+.+..+++. +.++|+|+||+....... ..+.+....+++++++|..+......+... .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 4688999999999988877642 446999999965443221 222222234599999999876554333222 2
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
....+|+--. -|. .+.....++....++.+|+++++.
T Consensus 110 ~~~vlVilDs-~H~----~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 110 PHPVLVILDS-SHT----HEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp -SSEEEEESS---------SSHHHHHHHHHHT--TT-EEEET
T ss_pred CCceEEEECC-Ccc----HHHHHHHHHHhCccCCCCCEEEEE
Confidence 3344554332 221 223456677799999999999875
No 249
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.41 E-value=0.0013 Score=56.21 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=60.4
Q ss_pred HHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775 24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (248)
+++.+ ..++..++|.-||.|+++..++.. +.+.|+|+|.++.+++.|+++.... ..++.+++++..+ +...+..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~--l~~~l~~ 87 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFAN--FFEHLDE 87 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHH--HHHHHHh
Confidence 34444 347889999999999999998876 3479999999999999999887643 2358888888654 2222211
Q ss_pred -cCCceeEEEec
Q 025775 102 -KANQADLVCCF 112 (248)
Q Consensus 102 -~~~~fD~V~~~ 112 (248)
...++|.|+..
T Consensus 88 ~~~~~vDgIl~D 99 (305)
T TIGR00006 88 LLVTKIDGILVD 99 (305)
T ss_pred cCCCcccEEEEe
Confidence 22457777653
No 250
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.37 E-value=0.0043 Score=49.81 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCCccHhHHH---HcCCCeEEEEeCChHHHHHHHHHHH--------------------------------
Q 025775 31 PYVTVCDLYCGAGVDVDKWE---TALIANYIGIDVATSGIGEARDTWE-------------------------------- 75 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~---~~~~~~v~giDis~~~l~~a~~~~~-------------------------------- 75 (248)
.+.+++|.+||.|.++--+. ......|.|.||++++++.|++...
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 45689999999998775442 2255689999999999998876221
Q ss_pred ---------hcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccc----hhhhc-CCHHHHHHHHHHHhccccCCcE
Q 025775 76 ---------NQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH----LQMCF-ETEERARRLLQNVSSLLKPGGY 141 (248)
Q Consensus 76 ---------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~----l~~~~-~~~~~~~~~l~~~~~~LkpgG~ 141 (248)
..+-.......++|+++........ .....|+|+.-.- .+|-= ...+....++..++.+|-++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 0111234678899998855433331 3445699977321 12211 1244678999999999955555
Q ss_pred EEE
Q 025775 142 FLG 144 (248)
Q Consensus 142 ~i~ 144 (248)
+.+
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 251
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.34 E-value=0.0023 Score=54.36 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=51.4
Q ss_pred hHHHHHHHHHh--cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCC
Q 025775 18 EFAKTALIKIY--SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCA 92 (248)
Q Consensus 18 ~~~~~~li~~~--~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~ 92 (248)
-|+...|.... .+...++||||||....-..+... ++ +++|+||++.+++.|++....+ +...++.++...-..
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~ 165 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD 165 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc
Confidence 55555443221 112568999999987543333222 55 9999999999999999988877 556667777554222
Q ss_pred CchhhhhcccCCceeEEEeccchhh
Q 025775 93 ENFETQMQEKANQADLVCCFQHLQM 117 (248)
Q Consensus 93 ~~~~~~~~~~~~~fD~V~~~~~l~~ 117 (248)
.+...+......||..+|+--+|.
T Consensus 166 -~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 166 -NIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp -SSTTTSTT--S-EEEEEE-----S
T ss_pred -ccchhhhcccceeeEEecCCcccc
Confidence 222222223468999999877664
No 252
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.32 E-value=0.00081 Score=57.10 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++..|||+++|.|+=+..++.. +.+.+++.|+++.-+...+.+....+. ..+.....|....... . ....||
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~--~--~~~~fd 158 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPK--K--PESKFD 158 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHH--H--HTTTEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccc--c--cccccc
Confidence 37889999999999988777665 356999999999999988887766552 2355555665432111 1 234699
Q ss_pred EEEecc------chhh------hcC--C----HHHHHHHHHHHhccc----cCCcEEEEEec
Q 025775 108 LVCCFQ------HLQM------CFE--T----EERARRLLQNVSSLL----KPGGYFLGITP 147 (248)
Q Consensus 108 ~V~~~~------~l~~------~~~--~----~~~~~~~l~~~~~~L----kpgG~~i~~~~ 147 (248)
.|.+-. .+.. ... . .....+++.++.+.+ +|||+++-++.
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 997622 1111 000 0 122467899999999 99999988744
No 253
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00049 Score=52.62 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCCCccHhHHHH--cCCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~--~~~~~v~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
.+.+|||+|.|--+++..+.. .+...|.-+|-+..+++..++....+. ...++..+..+.-... ......+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq----sq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ----SQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH----HHHhhCcc
Confidence 467899999885433433332 256689999999999988876543321 1111212222111111 11135689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
|+|+|..++.. .+....++..|..+|+|.|..++..|....-..++.
T Consensus 105 DiIlaADClFf----dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~ 151 (201)
T KOG3201|consen 105 DIILAADCLFF----DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL 151 (201)
T ss_pred cEEEeccchhH----HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHH
Confidence 99999886654 666788999999999999998888776643344443
No 254
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0031 Score=50.61 Aligned_cols=107 Identities=20% Similarity=0.055 Sum_probs=73.3
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+.+|.+||++|-|-|-...++...++..-+-++..+..++..+...-... .++....+--.+ ....+ ++++||-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeD--vl~~L--~d~~FDG 172 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWED--VLNTL--PDKHFDG 172 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHh--hhccc--cccCcce
Confidence 45899999999999988888877777788889999999887765432221 224444332211 11112 4678999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|.--.. -+.-+++..+.+.+.++|||+|+|-..
T Consensus 173 I~yDTy----~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 173 IYYDTY----SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eEeech----hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 854321 133567888899999999999988654
No 255
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.018 Score=48.63 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=42.0
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHh
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWEN 76 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~ 76 (248)
..|+...+|..-|.|+++..++... .++++|+|-++.+|+.|+++...
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 3478999999999999999998874 36899999999999999998754
No 256
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.19 E-value=0.00065 Score=53.28 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=71.8
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
...+.|+|.|+|-++. +++....+|++++.+|.-...|.+...-.+ ..+.+.+++|+.+.++ ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f--------e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF--------ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc--------cccceeHH
Confidence 4789999999997544 444456799999999998888887643222 1347899999977665 35799988
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 144 (248)
-+.=. ..-.+....++..+.+.||-++.++=
T Consensus 103 EmlDT--aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 103 EMLDT--ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhH--HhhcccccHHHHHHHHHhhcCCcccc
Confidence 65211 11234456677788889999998763
No 257
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00073 Score=60.63 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=51.2
Q ss_pred HHHHHh--cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC
Q 025775 23 ALIKIY--SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90 (248)
Q Consensus 23 ~li~~~--~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (248)
.+|..+ ++.+..+||+.||||.....+++ +.+.|+|+++++++++.|+.....++ ..+++|+++-+
T Consensus 373 s~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ng-isNa~Fi~gqa 440 (534)
T KOG2187|consen 373 STIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQING-ISNATFIVGQA 440 (534)
T ss_pred HHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcC-ccceeeeecch
Confidence 334444 34678899999999988877744 66799999999999999998776655 24589999944
No 258
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.09 E-value=0.017 Score=50.28 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=60.3
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc------------C-----CCeEEEEeCChHHHHHHHHHH-------HhcCCCceEE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA------------L-----IANYIGIDVATSGIGEARDTW-------ENQRKNFIAE 84 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~------------~-----~~~v~giDis~~~l~~a~~~~-------~~~~~~~~~~ 84 (248)
.+...+|+|+||..|..+..+... + .-+|.--|+-.+--...-+.+ ...+ ..=+.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-NYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-SEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-eEEEE
Confidence 335579999999999988766431 1 016777776554332221111 1111 00011
Q ss_pred EEEcCCCCCchhhhhcccCCceeEEEeccchhhhcC------C-----------------------------HHHHHHHH
Q 025775 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE------T-----------------------------EERARRLL 129 (248)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------~-----------------------------~~~~~~~l 129 (248)
-+-+...+.-+ +.++.|++++..++||+=. + ..++..+|
T Consensus 93 gvpgSFy~rLf------P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 93 GVPGSFYGRLF------PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp EEES-TTS--S-------TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccC------CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 12222222112 5789999999999998611 0 13456677
Q ss_pred HHHhccccCCcEEEEEecCh
Q 025775 130 QNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 130 ~~~~~~LkpgG~~i~~~~~~ 149 (248)
+.=.+-|+|||.++++++..
T Consensus 167 ~~Ra~ELv~GG~mvl~~~gr 186 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFLGR 186 (334)
T ss_dssp HHHHHHEEEEEEEEEEEEE-
T ss_pred HHhhheeccCcEEEEEEeec
Confidence 77788899999999996543
No 259
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.05 E-value=0.0026 Score=52.39 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=54.7
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
+++..+|+|||||.=-++..|.... ...|+|+||+..+++....-....+. .......|+.... +....|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-------~~~~~D 173 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-------PKEPAD 173 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-------TTSEES
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-------CCCCcc
Confidence 3467899999999887777776653 34999999999999988876655543 3556666876543 357899
Q ss_pred EEEeccchhh
Q 025775 108 LVCCFQHLQM 117 (248)
Q Consensus 108 ~V~~~~~l~~ 117 (248)
+....=.+|.
T Consensus 174 laLllK~lp~ 183 (251)
T PF07091_consen 174 LALLLKTLPC 183 (251)
T ss_dssp EEEEET-HHH
T ss_pred hhhHHHHHHH
Confidence 9988777774
No 260
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.99 E-value=0.0036 Score=55.25 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhcccCCcee
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.+.+|||.-+|+|.=+..++.. +...|+.-|+|+++++..+...+-++... ++...+.|+.. .+......||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~-----ll~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV-----LLYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH-----HHCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH-----HhhhccccCC
Confidence 3568999999999877777766 45699999999999999998877666554 57788888633 1212467899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 150 (248)
+|=. ++-.....++..+.+.++.||++.+|.-|..
T Consensus 124 ~IDl--------DPfGSp~pfldsA~~~v~~gGll~vTaTD~a 158 (377)
T PF02005_consen 124 VIDL--------DPFGSPAPFLDSALQAVKDGGLLCVTATDTA 158 (377)
T ss_dssp EEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HH
T ss_pred EEEe--------CCCCCccHhHHHHHHHhhcCCEEEEeccccc
Confidence 9933 3333456678888889999999999965553
No 261
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.90 E-value=0.015 Score=50.38 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHH--HHh--cC--CCceEEEEEcCCCCCchhhhhcccC
Q 025775 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WEN--QR--KNFIAEFFEADPCAENFETQMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~--~~~--~~--~~~~~~~~~~d~~~~~~~~~~~~~~ 103 (248)
...+||=+|-|-|-.+..+.+.+ ..+++-+|++|.|++.++.. ... .+ ...++..+..|+.+ . ++...
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--w---lr~a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--W---LRTAA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--H---HHhhc
Confidence 34579999999998888887775 78999999999999998832 111 11 13457888888754 2 22235
Q ss_pred CceeEEEeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 104 NQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
..||.|+...-=..... ..---.++-..+.+.|+++|.+++..-
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 68999987441110000 011235678889999999999998833
No 262
>PRK10742 putative methyltransferase; Provisional
Probab=96.76 E-value=0.012 Score=48.52 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=56.6
Q ss_pred CCCC--eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc------CC--CceEEEEEcCCCCCchhhhh
Q 025775 30 HPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------RK--NFIAEFFEADPCAENFETQM 99 (248)
Q Consensus 30 ~~~~--~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~------~~--~~~~~~~~~d~~~~~~~~~~ 99 (248)
+++. +|||+-+|.|.++..++..+. .|+++|-++.+....+...... +. ..++.++++|..+ + +
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~--~---L 158 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--A---L 158 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH--H---H
Confidence 4666 899999999999999999888 5999999999877665544331 11 1347778888633 2 2
Q ss_pred cccCCceeEEEeccch
Q 025775 100 QEKANQADLVCCFQHL 115 (248)
Q Consensus 100 ~~~~~~fD~V~~~~~l 115 (248)
.....+||+|++--.+
T Consensus 159 ~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 159 TDITPRPQVVYLDPMF 174 (250)
T ss_pred hhCCCCCcEEEECCCC
Confidence 2123479999876533
No 263
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.00087 Score=50.90 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=48.8
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHh
Q 025775 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~ 159 (248)
.+++.|+|.+..++.+ .+.+....+++++++.|||||.+-+..|+...+...|...
T Consensus 44 ~dns~d~iyaeHvlEH--lt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~ 99 (185)
T COG4627 44 EDNSVDAIYAEHVLEH--LTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHD 99 (185)
T ss_pred CCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhh
Confidence 4789999999888877 4567788999999999999999999999999888888753
No 264
>PRK11524 putative methyltransferase; Provisional
Probab=96.70 E-value=0.0057 Score=51.97 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775 19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (248)
Q Consensus 19 ~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~ 76 (248)
-+-..+|..+..+|+.|||.-||+|..+......+- +++|+|++++.++.|++|+..
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 344567778888999999999999987666555444 899999999999999999754
No 265
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.65 E-value=0.017 Score=52.85 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=74.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHc---C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~---~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
+..+|+|.+||+|+++...... . ...+.|.++++.....|+...--++....+....+|....+.... ....++
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-cCCccc
Confidence 6679999999999887655432 1 246999999999999988866555532234455555444332210 112467
Q ss_pred eeEEEeccchh---h-----------------hcCCHHHH-HHHHHHHhccccCCcEEEEEecCh
Q 025775 106 ADLVCCFQHLQ---M-----------------CFETEERA-RRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 106 fD~V~~~~~l~---~-----------------~~~~~~~~-~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
||.|+++--.- + .+.+.... ..+++.+...|+|||...+..|++
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 99887743211 1 01111222 678999999999999666666655
No 266
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.61 E-value=0.057 Score=47.71 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=34.8
Q ss_pred cCCceeEEEeccchhhhcCCH----------------------------------HHHHHHHHHHhccccCCcEEEEEec
Q 025775 102 KANQADLVCCFQHLQMCFETE----------------------------------ERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
+.++.+++.+..++||+=.-+ .++..+++.=.+-|.|||.++++++
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 578899999999999852101 1345566667778899999999865
Q ss_pred Ch
Q 025775 148 DS 149 (248)
Q Consensus 148 ~~ 149 (248)
..
T Consensus 239 Gr 240 (386)
T PLN02668 239 GR 240 (386)
T ss_pred cC
Confidence 43
No 267
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.61 E-value=0.0059 Score=49.47 Aligned_cols=53 Identities=26% Similarity=0.263 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHH
Q 025775 19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72 (248)
Q Consensus 19 ~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~ 72 (248)
-+-..+|..+..++..|||.-||+|..+......+- +.+|+|+++...+.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 344567788888999999999999987766655555 89999999999998864
No 268
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.58 E-value=0.017 Score=47.25 Aligned_cols=106 Identities=15% Similarity=0.058 Sum_probs=69.2
Q ss_pred hcCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
+++|+.+||-||.+.|......... +-.-|++++.|+.+=...-... ....++--+.-|+..+.-..- .-+.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmA---kkRtNiiPIiEDArhP~KYRm---lVgm 226 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMA---KKRTNIIPIIEDARHPAKYRM---LVGM 226 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHh---hccCCceeeeccCCCchheee---eeee
Confidence 3459999999999999988877664 4457999999986533221111 111235566777765432110 1246
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.|+|++.- -..++..-+.-|..-.||+||.|++.
T Consensus 227 VDvIFaDv------aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 227 VDVIFADV------AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEEeccC------CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 77776543 23445666677888999999999998
No 269
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.035 Score=42.04 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.+..+.+|||+|-|......++.+...-+|+++++-.+.+++-+.-..+......|..-|+-..++ ..|.-|
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--------~dy~~v 142 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--------RDYRNV 142 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc--------cccceE
Confidence 356789999999999988888877668899999999988887665444444457788888766554 233334
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE-ecChh
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDSS 150 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~~ 150 (248)
+... .+..+..+-..+..-|..|..++.. +|-..
T Consensus 143 viFg-------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 143 VIFG-------AESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred EEee-------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 3332 2333455556666677777777665 44443
No 270
>PRK13699 putative methylase; Provisional
Probab=96.51 E-value=0.011 Score=48.64 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775 20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (248)
Q Consensus 20 ~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~ 76 (248)
+-..+|+.+..+|..|||.-||+|..+......+- +++|+|+++...+.|.+|+..
T Consensus 152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 34456777788999999999999987766655554 899999999999999998765
No 271
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0066 Score=49.21 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCCccHhHHHHcC--------C--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-c
Q 025775 32 YVTVCDLYCGAGVDVDKWETAL--------I--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-Q 100 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~--------~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~ 100 (248)
-.+|.||+...|.+++.+.+.- . ..++++|+.+-+ +-.+ +.-+++|+++..-.+.+ .
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI~G----V~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PIEG----VIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------ccCc----eEEeecccCCHhHHHHHHH
Confidence 3579999999999998886541 1 139999986532 1122 67789999885433221 1
Q ss_pred c-cCCceeEEEeccc-----hhhhcCC--HHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHHHH
Q 025775 101 E-KANQADLVCCFQH-----LQMCFET--EERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK 158 (248)
Q Consensus 101 ~-~~~~fD~V~~~~~-----l~~~~~~--~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~~ 158 (248)
. ...+.|+|+|-.+ +|.+=+- .+-+..++.-...+|+|||.|+.-+..+ ..++.+++.
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK 178 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence 1 3458999999763 4532111 1234566777788999999999875544 555555554
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.013 Score=50.43 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
...+|||+|.|.|.-+...... ....++-++.|+..-+......+... ..+...-..|++...+ +-+.-|.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl------~lp~ad~ 185 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRL------SLPAADL 185 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhcc------CCCccce
Confidence 3467999999999654444332 22356666666655444433322211 1112222333322211 1234455
Q ss_pred EEeccchhhhc--CCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHHHh
Q 025775 109 VCCFQHLQMCF--ETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN 159 (248)
Q Consensus 109 V~~~~~l~~~~--~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~~~ 159 (248)
+++..+++..+ ..+..+...++.+...+.|||.+++. +|-+-.++.+.++.
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ 241 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQI 241 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHH
Confidence 55544554432 23344566899999999999999999 44444555555543
No 273
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.33 E-value=0.042 Score=48.47 Aligned_cols=111 Identities=15% Similarity=0.066 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
|+.+|||+++..|+=+..++.. +.+.+++.|.+.+-+....+.....+. ........|..+ +.+.. -.++||-
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~e--f~~~~--~~~~fDR 315 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGRE--FPEKE--FPGSFDR 315 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCccc--ccccc--cCcccce
Confidence 7899999999999988777664 566899999999998888777766552 124445555543 21111 1347998
Q ss_pred EEeccchhh-----------hcCCH-------HHHHHHHHHHhccccCCcEEEEEe
Q 025775 109 VCCFQHLQM-----------CFETE-------ERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 109 V~~~~~l~~-----------~~~~~-------~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
|..-.-.-. ...+. .-.++++.....++++||+++-++
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 864321110 00111 224678889999999999999773
No 274
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.25 E-value=0.0029 Score=45.31 Aligned_cols=41 Identities=27% Similarity=0.518 Sum_probs=31.8
Q ss_pred ceeEEEeccchhhhcC--CHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFE--TEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~--~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.||+|+|..+.-+... .++-+..+++.+.+.|+|||+|++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999876644333 3456889999999999999999987
No 275
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.16 E-value=0.48 Score=39.02 Aligned_cols=108 Identities=14% Similarity=-0.115 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.|.+||=+|=+--..+...+....++++.+||++..++.-++.....+. +++..+.|+...-.. . -.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~LP~-~---~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDPLPE-E---LRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---T-T---TSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccccCCH-H---HhcCCCEEE
Confidence 6899999984432212122223567999999999999988877766653 488899998764221 1 258999997
Q ss_pred eccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecCh
Q 025775 111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDS 149 (248)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~ 149 (248)
+.- ..+.+-+.-++++....||..| ..++.+-..
T Consensus 118 TDP-----PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 118 TDP-----PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp E--------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred eCC-----CCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 754 2467788999999999998655 545543333
No 276
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.00 E-value=0.035 Score=44.29 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ 77 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~ 77 (248)
+.-...|||||-|+++..++.. +-..+.|.+|--..-++.++|....
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 3457999999999999999776 3347889999999988888887653
No 277
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.96 E-value=0.089 Score=44.43 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
...+||=+|-|-|+.+.....+ ...++.-+|++...++..++-.+... ...++.+..+|-.. +.+.. +.++|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~--~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDL--KENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHh--ccCCc
Confidence 4688999999999988766655 56789999999999998888665422 12357777777522 32222 47899
Q ss_pred eEEEeccchhhhcCC--HHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775 107 DLVCCFQHLQMCFET--EERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (248)
Q Consensus 107 D~V~~~~~l~~~~~~--~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 157 (248)
|+|+.-..=.- .+ ..-.+..++.+.+.||+||+.+..- +.-.+..++.
T Consensus 197 dVii~dssdpv--gpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~~i 246 (337)
T KOG1562|consen 197 DVIITDSSDPV--GPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLDYI 246 (337)
T ss_pred eEEEEecCCcc--chHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHHHH
Confidence 99976331110 11 1135678899999999999998774 3333444443
No 278
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.88 E-value=0.051 Score=44.98 Aligned_cols=109 Identities=16% Similarity=-0.016 Sum_probs=61.7
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH----HhcCCCceEEEEEcCCCCCchhhhhcccCCc-e
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW----ENQRKNFIAEFFEADPCAENFETQMQEKANQ-A 106 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-f 106 (248)
..+||++|+|+|-....++.....+|...|+..........+- ...+.+.++.....+-....-.... ... +
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---LPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc---cCCcc
Confidence 5579999999995555555445568999998766544332211 1111111232222222222111111 223 9
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|+|++..++. ..+...-++..+...|..+|.+++.++
T Consensus 164 DlilasDvvy----~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 164 DLILASDVVY----EEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred cEEEEeeeee----cCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999887543 345566677778888888886666544
No 279
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.87 E-value=0.02 Score=48.43 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=51.4
Q ss_pred eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (248)
Q Consensus 34 ~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (248)
+|+|+.||.|+....+...+...+.++|+++.+++..+..+.. ..+++|+.+..... ....+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~----~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD----FIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh----cCCCCCEEEeCC
Confidence 6999999999998888888887889999999998876665432 15677776644321 035699998755
No 280
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.77 E-value=0.028 Score=48.06 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=52.1
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCc
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~ 105 (248)
..++...+|.--|.|+++..++.. +...++|+|.++.+++.|++++... ..++.+++.+..+ +...+.. ...+
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~--l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN--LDEYLKELNGINK 93 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG--HHHHHHHTTTTS-
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH--HHHHHHHccCCCc
Confidence 457889999999999999999876 4479999999999999998876532 2347888888644 2222221 2346
Q ss_pred eeEEEe
Q 025775 106 ADLVCC 111 (248)
Q Consensus 106 fD~V~~ 111 (248)
+|.|+.
T Consensus 94 ~dgiL~ 99 (310)
T PF01795_consen 94 VDGILF 99 (310)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 777765
No 281
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.0037 Score=55.91 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
++.+|||.-|++|..+..++.. +..++++-|.++++++.-+...+-++....++-.+.|+...-.. . +.....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~-~-~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE-H-PMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh-c-cccccccce
Confidence 4678999999999999888876 66799999999999997777665544322344445554321111 0 012468999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 152 (248)
|-. ++-.....++....+.++.||++.+|.-|...+
T Consensus 187 IDL--------DPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL 222 (525)
T KOG1253|consen 187 IDL--------DPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL 222 (525)
T ss_pred Eec--------CCCCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence 933 233334567777788889999999996555333
No 282
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.69 E-value=0.072 Score=46.19 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=64.4
Q ss_pred HhcCCCCeEEEEcCC-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 27 IYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 27 ~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
..+.|+.+|+=.|+| -|+.+.+++..-.++|+++|.+++-++.|++.-.. .++... +.+..+.+ .+.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~--~~~~~~~~---~~~ 229 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSS--DSDALEAV---KEI 229 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcC--CchhhHHh---Hhh
Confidence 345689999999988 35666677664336999999999999888875332 233322 22222222 234
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+..-. . ..+....+.|++||.+++.
T Consensus 230 ~d~ii~tv~-~----------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 230 ADAIIDTVG-P----------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CcEEEECCC-h----------hhHHHHHHHHhcCCEEEEE
Confidence 999977554 3 2466677789999999987
No 283
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.085 Score=45.88 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=73.0
Q ss_pred HHHHhcCC-CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775 24 LIKIYSHP-YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 24 li~~~~~~-~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (248)
+++.+... ..+|||.-||+|.=...++.. +...++.-|+||++++..+.....+. ..+...+..|+.. .+..
T Consensus 44 ~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~DAN~-----lm~~ 117 (380)
T COG1867 44 VLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINKDANA-----LLHE 117 (380)
T ss_pred HHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecchHHH-----HHHh
Confidence 34444432 688999999999766666555 33389999999999999998776551 1234555566522 2222
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
....||+|=. ++-.....++....+.++.||++-+|.-|.
T Consensus 118 ~~~~fd~IDi--------DPFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 118 LHRAFDVIDI--------DPFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred cCCCccEEec--------CCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 3478999933 222233446666667778899999984443
No 284
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.53 E-value=0.027 Score=43.23 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHH-HHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE-ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~-a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
+.+++=+|+..=-.-......+.+++.-++.++--++. .+.+. ..+...++...+....++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------------ssi~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------------SSILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------------ccccHHHHHHHHHHhhccchhhh
Confidence 45667777653221112223466678888766533221 11110 11111123333333578899999
Q ss_pred eccchhhh--------cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 111 CFQHLQMC--------FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 111 ~~~~l~~~--------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
|..++.+. ..+..+ ...+.++.++|||||.+++.+|-+
T Consensus 69 s~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred eechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecC
Confidence 88777432 122222 456778999999999999998855
No 285
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.44 E-value=0.57 Score=39.28 Aligned_cols=113 Identities=12% Similarity=0.017 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChH-HHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhccc---CCc
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATS-GIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ 105 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~-~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~ 105 (248)
...|+.||||-= +..+.-.....+..+|++-. +++.-++.+...+ ...+..++.+|+. .+....+... ...
T Consensus 82 ~~qvV~LGaGlD--Tr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLD--TRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccc--cHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCC
Confidence 346999999864 33332221223445555544 4555555555322 2245788999987 4443333211 234
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
--++++-.++.| .+.+....+++.+.+...||+.+++...+.
T Consensus 159 ptl~i~EGvl~Y--L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMY--LTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred Ceeeeecchhhc--CCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 457777888887 678889999999999988999999986553
No 286
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.38 E-value=0.012 Score=49.60 Aligned_cols=80 Identities=19% Similarity=-0.013 Sum_probs=59.4
Q ss_pred HhcCCCCeEEEEcCCCCccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 27 IYSHPYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
.+...+..|.|+-.|-|.++. .+...+.+.|.++|.+|.+++..+...+.++...+.....+|.....+ ...
T Consensus 190 ~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~ 262 (351)
T KOG1227|consen 190 NTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLR 262 (351)
T ss_pred hcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------ccc
Confidence 444456889999999999998 666778889999999999999888877666544445556666554433 567
Q ss_pred eeEEEecc
Q 025775 106 ADLVCCFQ 113 (248)
Q Consensus 106 fD~V~~~~ 113 (248)
.|-|....
T Consensus 263 AdrVnLGL 270 (351)
T KOG1227|consen 263 ADRVNLGL 270 (351)
T ss_pred chheeecc
Confidence 78885543
No 287
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.28 E-value=0.035 Score=49.26 Aligned_cols=56 Identities=16% Similarity=0.031 Sum_probs=46.1
Q ss_pred CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc
Q 025775 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA 88 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~ 88 (248)
..|||||.|||.++.....++...+++++.-..|.+.|+.....++...++..+.-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 46999999999877777777777899999999999999998887776666665543
No 288
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.27 E-value=0.14 Score=43.63 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=75.1
Q ss_pred CeEEEEcCCCCccHhHHHHcC------------C---------CeEEEEeCChH--HHHHHHHHHHh-------------
Q 025775 33 VTVCDLYCGAGVDVDKWETAL------------I---------ANYIGIDVATS--GIGEARDTWEN------------- 76 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~------------~---------~~v~giDis~~--~l~~a~~~~~~------------- 76 (248)
.+||-||-|.|.-+..++..- . -.++.+||.+= .++.-......
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987766554320 1 27999998752 22222221111
Q ss_pred ---cCCCceEEEEEcCCCCCchhhhhcc-cCCceeEEEeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEE
Q 025775 77 ---QRKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 77 ---~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
....+.+.|.+.|+..........- .....|+|+..|.++..|. ......+++.++...++||..+++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 1123568999999977554221000 1236899999998876654 4567789999999999999999887
No 289
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.25 E-value=0.065 Score=43.67 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
++.++||||.|.--.=-.+-.+ ++ +.+|.|+++.+++.|+.....+ +....+++....-.+ .+........+.||
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~-~if~giig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD-AIFNGIIGKNERYD 155 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc-ccccccccccceee
Confidence 5678999988764321111111 34 8999999999999999887665 333334444322111 12222222467899
Q ss_pred EEEeccchhh
Q 025775 108 LVCCFQHLQM 117 (248)
Q Consensus 108 ~V~~~~~l~~ 117 (248)
.+.|+--+|.
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999988885
No 290
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.00 E-value=0.094 Score=43.07 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=45.0
Q ss_pred CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHH---HHHHhcCC-----CceEEEEEcCCCCCchhhhhcccCC
Q 025775 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRK-----NFIAEFFEADPCAENFETQMQEKAN 104 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~---~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (248)
.+|||.-+|-|.++.-++..+. +|++++-||.+-...+ +++..... ..+++++++|..+ +. ...+.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~--~L---~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE--YL---RQPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC--HC---CCHSS
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH--HH---hhcCC
Confidence 3899999999999998887776 8999999998654433 33333221 1358999999855 21 12468
Q ss_pred ceeEEEeccc
Q 025775 105 QADLVCCFQH 114 (248)
Q Consensus 105 ~fD~V~~~~~ 114 (248)
+||+|..--.
T Consensus 151 s~DVVY~DPM 160 (234)
T PF04445_consen 151 SFDVVYFDPM 160 (234)
T ss_dssp --SEEEE--S
T ss_pred CCCEEEECCC
Confidence 9999988653
No 291
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.96 E-value=0.14 Score=40.64 Aligned_cols=110 Identities=22% Similarity=0.099 Sum_probs=59.4
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHH----HHH-HHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGE----ARD-TWENQRKNFIAEFFEADPCAENFETQMQE 101 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~----a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 101 (248)
++++.+|+|+-.|.|.++.-+... +-+.|++.-..+...-. .+. .........+.+.+-.++....
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~------- 118 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG------- 118 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-------
Confidence 568999999999999998877654 22356665544331111 000 0000000000112222211111
Q ss_pred cCCceeEEEecc---chhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 102 KANQADLVCCFQ---HLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 102 ~~~~fD~V~~~~---~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+...|++.... .+|.-..+......+...+++.|||||++++.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 234556654422 23322233556788899999999999999887
No 292
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.94 E-value=0.56 Score=41.53 Aligned_cols=128 Identities=15% Similarity=0.172 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCCccH----hHHHHcC---C-CeEEEEeC----ChHHHHHHHHHHHhc--CCCceEEEEEc---CCCCC
Q 025775 31 PYVTVCDLYCGAGVDV----DKWETAL---I-ANYIGIDV----ATSGIGEARDTWENQ--RKNFIAEFFEA---DPCAE 93 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~----~~l~~~~---~-~~v~giDi----s~~~l~~a~~~~~~~--~~~~~~~~~~~---d~~~~ 93 (248)
+.-+|+|+|.|.|.-= ..++..+ + -++||++. +...++.+.++.... ..+.+.+|... +....
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 5568999999998422 2222221 2 28999999 788888877765432 11222344332 22222
Q ss_pred chhhhhcccCCceeEEEeccchhhhcCCHH----HHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHHHhH
Q 025775 94 NFETQMQEKANQADLVCCFQHLQMCFETEE----RARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (248)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~----~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~~~~ 160 (248)
... .+...++..=+|.|.+.+|++..... ....++..+ +.|+|.-+.++. -.|+..+..++.+.+
T Consensus 190 ~~~-~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ea~~n~~~F~~RF~eal 261 (374)
T PF03514_consen 190 DPS-MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQEADHNSPSFLERFREAL 261 (374)
T ss_pred CHH-HhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence 111 11112344556778888998653221 245566655 477998666655 334566666666543
No 293
>PHA01634 hypothetical protein
Probab=94.93 E-value=0.085 Score=38.93 Aligned_cols=46 Identities=4% Similarity=-0.178 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~ 76 (248)
.+.+|+|||.+-|..+..++..+.+.|+++++++...+..++....
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 7899999999999999999999999999999999998888775544
No 294
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.87 E-value=0.13 Score=44.10 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-hhhhhcc--cCC
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQE--KAN 104 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~--~~~ 104 (248)
.+|.+||=+|+|+ |..+..+++. +.++|+.+|++++-|+.|++ +-.. .........+.+ +.+.+.. ...
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~-----~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT-----VTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe-----EEeeccccccHHHHHHHHHhhcccc
Confidence 4799999999997 5555555554 77899999999999999987 3211 111111111111 1111111 123
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
.+|+++.-..+ +..++.....+++||.+++....
T Consensus 242 ~~d~~~dCsG~----------~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 242 QPDVTFDCSGA----------EVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred CCCeEEEccCc----------hHHHHHHHHHhccCCEEEEeccC
Confidence 48877543333 33455567788999997776433
No 295
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.83 E-value=0.035 Score=47.75 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=77.1
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHH-------HHHHhcCC-CceEEEEEcCCCCCchhhhhc
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR-------DTWENQRK-NFIAEFFEADPCAENFETQMQ 100 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~-------~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~ 100 (248)
+.||+-|+|--.|||+++...+..+. .|.|.||+-.++...+ +.+++-+. ..-+..+.+|....++.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r---- 280 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR---- 280 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----
Confidence 45899999999999998877766666 8999999999887332 22222221 12256788888877765
Q ss_pred ccCCceeEEEecc--chh-----------------------hhcCC----HHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 101 EKANQADLVCCFQ--HLQ-----------------------MCFET----EERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 101 ~~~~~fD~V~~~~--~l~-----------------------~~~~~----~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
....||.|+|.- ++. +-... ..-...++.-..+.|..||.+++..|..
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 356899999942 111 10000 0123456777788999999999987743
No 296
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.79 E-value=0.065 Score=48.43 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=65.2
Q ss_pred CeEEEEcCCCCccHhHHHHcCCCeEEEEeCCh----HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVAT----SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~----~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.+|+|...|.|+++..+...+ |+....-+ +.+..-..| +. + -...|-.+ .|. -.+.+||+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydR----GL---I-G~yhDWCE-~fs----TYPRTYDL 430 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDR----GL---I-GVYHDWCE-AFS----TYPRTYDL 430 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhc----cc---c-hhccchhh-ccC----CCCcchhh
Confidence 479999999999998887654 33333222 222222111 10 1 01122211 111 14789999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhH
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNV 160 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~ 160 (248)
|.+...+-. ....-++..++-++-|.|+|||.+++. +...+..+..+..
T Consensus 431 lHA~~lfs~-~~~rC~~~~illEmDRILRP~G~~iiR--D~~~vl~~v~~i~ 479 (506)
T PF03141_consen 431 LHADGLFSL-YKDRCEMEDILLEMDRILRPGGWVIIR--DTVDVLEKVKKIA 479 (506)
T ss_pred eehhhhhhh-hcccccHHHHHHHhHhhcCCCceEEEe--ccHHHHHHHHHHH
Confidence 988765543 133346788999999999999999875 5555555555443
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.45 E-value=0.046 Score=39.04 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCC
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVA 63 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis 63 (248)
+...-.|||||+|-+..-+.+.++ .=.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 345789999999987777777777 67788864
No 298
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.41 E-value=0.29 Score=42.85 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc-CCcee
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD 107 (248)
++.+|+=+|||+ |..+..+++. +.++++.+|.++.-++.|++..... .......+.......... ...+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCC
Confidence 455899999998 5554455444 6779999999999999998754321 111111100011011111 23699
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+-... ....+..+.+.++|||.+++.
T Consensus 241 ~vie~~G----------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 241 VVIEAVG----------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence 8865442 233778888899999998877
No 299
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.22 E-value=0.62 Score=40.67 Aligned_cols=121 Identities=15% Similarity=0.002 Sum_probs=67.9
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHc---C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh--hh-c
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET--QM-Q 100 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~---~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~-~ 100 (248)
++|+.+|||++...|+=+..+... . .+.+++=|.++.-+........... .........|+...+-.. .. .
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence 358999999999999988777654 2 2379999999876655444332111 111222333332111000 00 0
Q ss_pred ccCCceeEEEeccc-----hh-h---hcCC-H---------HHHHHHHHHHhccccCCcEEEEEecChh
Q 025775 101 EKANQADLVCCFQH-----LQ-M---CFET-E---------ERARRLLQNVSSLLKPGGYFLGITPDSS 150 (248)
Q Consensus 101 ~~~~~fD~V~~~~~-----l~-~---~~~~-~---------~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 150 (248)
.....||-|.|--- .+ . .+.. + .-.-.++.+..++||+||.++-++.+-.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 02346888876321 10 0 0000 0 1134688899999999999998865543
No 300
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.89 E-value=0.21 Score=45.45 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=72.5
Q ss_pred CCeEEEEcCCCCccHhHHHHc------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 32 YVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~------~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
...|+=+|.|.|-+..+..+. .. ++++++-+|+++-..+.+ ....+..+++++..|++.-.. +..+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~a------p~eq 439 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNA------PREQ 439 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCC------chhh
Confidence 356889999999877554432 23 799999999998765542 222234569999999977542 2478
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 144 (248)
.|++++-. -..|.+-+--.+.+.-+-+.|||+|+.|=
T Consensus 440 ~DI~VSEL--LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 440 ADIIVSEL--LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ccchHHHh--hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 89987632 22344555567899999999999998763
No 301
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.88 E-value=0.52 Score=37.46 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc-CC
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-AN 104 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~ 104 (248)
+...|+|+|.-.|+.+..++.. ...+|+++||+-..++-+.... .++.|++++-.++......... .+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 4578999999999988777653 2348999999987765443321 2389999998877665443322 22
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.--+.+|..+-|. .+..-.-++....+|..|-++++.
T Consensus 143 y~kIfvilDsdHs----~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 143 YPKIFVILDSDHS----MEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred CCcEEEEecCCch----HHHHHHHHHHhhhHhhcCceEEEe
Confidence 2345555555554 445566677788888999999876
No 302
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.77 E-value=0.13 Score=45.55 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=64.5
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhcc--cC
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KA 103 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~--~~ 103 (248)
+.++.+||.+|||. |..+..++.. +...++++|.+++.++.+++... +..+.. ... .+...+.. ..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-------~~vi~~--~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-------AETINF--EEVDDVVEALRELTGG 252 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEEcC--CcchHHHHHHHHHcCC
Confidence 34788999999987 7777677665 44469999999999888776421 122211 111 12221111 22
Q ss_pred CceeEEEeccchh-----------hhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 104 NQADLVCCFQHLQ-----------MCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 104 ~~fD~V~~~~~l~-----------~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
..+|+|+..-.-+ +.+....+....+.++.+.|+++|.++..
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 3689886643111 00011122245678888999999999876
No 303
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=93.26 E-value=1.1 Score=35.28 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=56.7
Q ss_pred CCC-eEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhccc---C
Q 025775 31 PYV-TVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK---A 103 (248)
Q Consensus 31 ~~~-~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~---~ 103 (248)
++. .|+.||||-=.....+.... ...++-+|. |++++..++.+..... .....++.+|+.+..+...+.+. .
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 555 89999998754444443322 225555554 3345555444444311 11245799999886665555422 3
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHH
Q 025775 104 NQADLVCCFQHLQMCFETEERARRLLQNV 132 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 132 (248)
...-++++-.++.| .+.+....+++.+
T Consensus 156 ~~ptl~i~Egvl~Y--l~~~~~~~ll~~i 182 (183)
T PF04072_consen 156 DRPTLFIAEGVLMY--LSPEQVDALLRAI 182 (183)
T ss_dssp TSEEEEEEESSGGG--S-HHHHHHHHHHH
T ss_pred CCCeEEEEcchhhc--CCHHHHHHHHHHh
Confidence 55678888888888 5677788887765
No 304
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.22 E-value=0.51 Score=43.44 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-------------ch
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-------------NF 95 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-------------~~ 95 (248)
++.+|+=+|||. |..+...+.. +. .|+++|.+++-++.++.. + .++...|..+. ++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhH
Confidence 689999999998 5444444444 55 899999999999888763 2 33332222111 11
Q ss_pred hh----hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 96 ET----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 96 ~~----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.. .+.+....+|+|+....... ......+.++..+.+||||.++..
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEE
Confidence 00 00111146999977553221 111222348888899999998766
No 305
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.21 E-value=0.68 Score=33.19 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchh
Q 025775 40 CGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQ 116 (248)
Q Consensus 40 cG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~ 116 (248)
||.|..+..++.. ....++.+|.+++.++.++... +.++.+|..+....... .-.+.|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a--~i~~a~~vv~~~--- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERA--GIEKADAVVILT--- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHT--TGGCESEEEEES---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhc--CccccCEEEEcc---
Confidence 4555555555432 3348999999999887776432 56899999886554332 235688776644
Q ss_pred hhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775 117 MCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (248)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 151 (248)
.+. .....+....+.+.|...++....+...
T Consensus 71 ---~~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 71 ---DDD-EENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp ---SSH-HHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred ---CCH-HHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 223 3334444555777888888887776644
No 306
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.01 E-value=0.16 Score=42.64 Aligned_cols=51 Identities=16% Similarity=-0.020 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHH
Q 025775 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68 (248)
Q Consensus 18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~ 68 (248)
+.++..+-....-.+.+|||+|||.|-........+...+...|.|...++
T Consensus 103 ~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 103 PYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 333333323444578999999999997776666666568899999988874
No 307
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=92.97 E-value=0.079 Score=48.93 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=65.3
Q ss_pred HhcCCCCeEEEEcCCCCccHhHHHHc-CC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--c
Q 025775 27 IYSHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K 102 (248)
Q Consensus 27 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~ 102 (248)
.++.++..||||||.+|++++-.... +. +-|+|+|+-|-- . ..++.-++.|++.......+.. .
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------p---~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------P---IPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------c---CCccchhhhhhhHHHHHHHHHHHHH
Confidence 34668999999999999998766554 33 479999987631 0 0124445555543222111100 2
Q ss_pred CCceeEEEeccchh-------hhcCCHHHHHHHHHHHhccccCCcEEEEE-ecCh--hHHHHHHHH
Q 025775 103 ANQADLVCCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS--STIWAKYQK 158 (248)
Q Consensus 103 ~~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~--~~~~~~~~~ 158 (248)
..+.|+|..-++.. ..+....-.-..+.-....|+.||.|+-- +++. ..+...+.+
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~q 173 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQ 173 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHH
Confidence 34568776544221 11111111234556667788899996644 3332 444444444
No 308
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.58 E-value=0.21 Score=42.75 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=50.0
Q ss_pred eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (248)
Q Consensus 34 ~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (248)
+++|+-||.|+....+...++..+.++|+++.+.+.-+..+. .....|+.+.+.. .+ +. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l--~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DL--PK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HH--HH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-cc--cc-cceEEEecc
Confidence 689999999999999988888789999999998776655543 4678888776543 22 22 589987754
No 309
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.25 E-value=0.4 Score=41.62 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+||=.|||. |..+..++.. +..+++++|.+++-++.+++. + +..+ .|..+.++.+... ..+.+|
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----G----a~~v-i~~~~~~~~~~~~-~~g~~D 237 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----G----ADKL-VNPQNDDLDHYKA-EKGYFD 237 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----C----CcEE-ecCCcccHHHHhc-cCCCCC
Confidence 3688999999874 5555555554 555799999999988877652 1 1111 1212222221111 124589
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+.... . ...+....+.|++||.++..
T Consensus 238 ~vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 238 VSFEVSG------H----PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 8865432 1 12455667788999999876
No 310
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.18 E-value=0.36 Score=43.37 Aligned_cols=124 Identities=13% Similarity=0.015 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775 32 YVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD 107 (248)
...+.|+|.|.|...-..... ....++.+|.|..|+........+... ..-.++...+....+ ++. ....||
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~-~g~~~v~~~~~~r~~---~pi~~~~~yD 276 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH-IGEPIVRKLVFHRQR---LPIDIKNGYD 276 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh-cCchhccccchhccc---CCCCccccee
Confidence 456888988877543222211 244799999999999887765544100 001111111111111 111 245699
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec---ChhHHHHHHHHh
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP---DSSTIWAKYQKN 159 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~---~~~~~~~~~~~~ 159 (248)
+|+|.+.+|..-.........-+-..+..++|+.+++.-+ -+-.+...-+++
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR~~ 331 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEARQN 331 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHHHh
Confidence 9999999987433343333444445566688998888733 334444444443
No 311
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=91.10 E-value=0.36 Score=36.61 Aligned_cols=105 Identities=15% Similarity=0.017 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
....|||+|-|+|..=..+... +..+++.+|-.-..= .. .....-.++++|+.+.-- .......+.-++
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~-~~P~~~~~ilGdi~~tl~--~~~~~g~~a~la 97 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PS-STPPEEDLILGDIRETLP--ALARFGAGAALA 97 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GG-G---GGGEEES-HHHHHH--HHHHH-S-EEEE
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CC-CCCchHheeeccHHHHhH--HHHhcCCceEEE
Confidence 4467999999999877666554 556899999542211 00 001113467777644211 111123445556
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+-...++--.+......+-.-+..+|.|||+++-.
T Consensus 98 HaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 98 HADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp EE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred EeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 555555541111112333445677889999998854
No 312
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.98 E-value=0.37 Score=41.62 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=47.5
Q ss_pred EEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775 35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (248)
Q Consensus 35 VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (248)
|+|+-||.|+....+...+..-+.++|+++.+++.-+..+.. ..+++|+.+..... -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~-----~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSD-----IPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhh-----CCCcCEEEecC
Confidence 689999999999999888886778999999988766554432 24567776543321 23578886643
No 313
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.88 E-value=0.42 Score=39.75 Aligned_cols=59 Identities=5% Similarity=0.035 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCC-CCeEEEEcCCCCccHhHHHHc---------CCCeEEEEeCChHHHHHHHHHHHh
Q 025775 18 EFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN 76 (248)
Q Consensus 18 ~~~~~~li~~~~~~-~~~VLDlGcG~G~~~~~l~~~---------~~~~v~giDis~~~l~~a~~~~~~ 76 (248)
+|+...+.....+. ..+|+|+|.|+|.++..++.. ...+++-+++|+.+.+..++++..
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 44444443333332 479999999999988777653 124899999999998888877654
No 314
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.70 E-value=9.9 Score=32.55 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhcc---cCC
Q 025775 32 YVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQE---KAN 104 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~---~~~ 104 (248)
-..|+-||||-= +..+.-... ..|.-+|. |+.++.-++.+.+.+. ..+..++..|+.+.+....+.. ...
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 367999999853 333322222 25666663 5556665566655431 2358899999986665544432 123
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
.--++++-+.+.| .+.+...+++..|.....||..++...+
T Consensus 170 ~pt~~iaEGLl~Y--L~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMY--LPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEecccccc--CCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 4457788888888 6788999999999999999999998865
No 315
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.56 E-value=0.93 Score=39.81 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHHHHHHhcC--CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHH
Q 025775 21 KTALIKIYSH--PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72 (248)
Q Consensus 21 ~~~li~~~~~--~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~ 72 (248)
.+.||..... +-..|.|+|.|.|+++..+.-...-.|.+||-|....+.|+.
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3445554433 556899999999998877755533489999999777666654
No 316
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.22 E-value=2.8 Score=35.73 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=58.5
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-cccCCce
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~f 106 (248)
+.++.+||..|||. |..+..++.....++++++.++...+.+++. + +..+..+ .+......+ ......+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g----~~~~~~~-~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----G----ADEVLNS-LDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----C----CCEEEcC-CCcCHHHHHHHhcCCCc
Confidence 44778899988763 6666666665334799999999888777442 1 1111111 111111111 1134579
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|+..... ...+..+.+.|+++|.++..
T Consensus 234 D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDFVGT----------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 988653211 23566778899999999876
No 317
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=1.5 Score=38.25 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc---------CCCeEEEEeCChHHHHHHHHHHHh
Q 025775 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN 76 (248)
Q Consensus 18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~---------~~~~v~giDis~~~l~~a~~~~~~ 76 (248)
.|+...+-+.-.++...++|||.|+|.++..+++. ...++.-+++|++..+.-++.++.
T Consensus 64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 44443333333445678999999999988777653 245899999999998877766554
No 318
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.88 E-value=3 Score=36.89 Aligned_cols=120 Identities=16% Similarity=0.060 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHH-------hcCC-CceEEEEEc
Q 025775 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWE-------NQRK-NFIAEFFEA 88 (248)
Q Consensus 18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~-------~~~~-~~~~~~~~~ 88 (248)
+++.+..-+.-+.+++.-.|+|+|-|+.....+.. +...-+|+++....-+.|..... -.+. ..++..+++
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 55555555555678999999999999988777654 44566788877665444433211 1111 345788888
Q ss_pred CCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+.........+ ....++|+++.+. | +++...+. .++..-+++|-.++-+
T Consensus 259 sf~~~~~v~eI---~~eatvi~vNN~~---F-dp~L~lr~-~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 259 SFLDPKRVTEI---QTEATVIFVNNVA---F-DPELKLRS-KEILQKCKDGTRIISS 307 (419)
T ss_pred ccCCHHHHHHH---hhcceEEEEeccc---C-CHHHHHhh-HHHHhhCCCcceEecc
Confidence 88765543322 4567888776632 2 24433333 3788888999988866
No 319
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.24 E-value=1.6 Score=39.57 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc---ccCCce
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ---EKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~f 106 (248)
.+..+|-+|-|.|++...+... +...++++.++|.|++.|.+.+.-... .+......|- .++..... ..+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dG--l~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADG--LDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhc--hHHHHHHhhccccccCC
Confidence 4567888999999888777554 556999999999999999876421100 0011122221 11111110 134578
Q ss_pred eEEEecc---chhhhcCCHH--HHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQ---HLQMCFETEE--RARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~---~l~~~~~~~~--~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|++...- -.|.+-.+.. -...++..+...|.|-|.|++-
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 8875421 1232212222 3578999999999999999887
No 320
>PTZ00357 methyltransferase; Provisional
Probab=89.16 E-value=1.4 Score=41.75 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=66.4
Q ss_pred CeEEEEcCCCCccHhHHHHc----CC-CeEEEEeCChHHHHHHHHHHHh-cCC-------CceEEEEEcCCCCCchhh--
Q 025775 33 VTVCDLYCGAGVDVDKWETA----LI-ANYIGIDVATSGIGEARDTWEN-QRK-------NFIAEFFEADPCAENFET-- 97 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~l~~~----~~-~~v~giDis~~~l~~a~~~~~~-~~~-------~~~~~~~~~d~~~~~~~~-- 97 (248)
..|+=+|+|.|-+....... +. -++++++-++.++.....+... ..+ ..+++++..|+.......
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999877655443 22 2899999997755444443311 122 345899999998754311
Q ss_pred -h--hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC----CcE
Q 025775 98 -Q--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP----GGY 141 (248)
Q Consensus 98 -~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 141 (248)
. .+..-+++|+|++-. -..|..-+--.+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL--LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL--LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh--hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0 001124799998732 11344455556777777778776 776
No 321
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=88.56 E-value=0.57 Score=46.91 Aligned_cols=102 Identities=13% Similarity=-0.024 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+.++||+|.|.-.=...+.... ..++.+|+-|-+- ....+.....|+++|-...... ...++|.++
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP~~-~pvtmvD~RP~ae-------~m~~w~t~T~y~~~DYl~~~~~-----~~~~~D~vt 888 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIPPD-TPVTMVDTRPFAE-------PMNCWNTQTQYIQADYLSDAWW-----NGTPFDAVT 888 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS-TT-SEEEEEESS--SS-------SCCCCSTTEEEEES-TTSCCGG-----CC---SEEE
T ss_pred CcceEEEccCCccceeeeccCCC-CceEEEecCCccc-------ccchhhhcceeeeeccccceeE-----ecCCCCEEE
Confidence 36789999999863222222222 3799999866431 1122334578999998877664 356899999
Q ss_pred eccchhhhc-CCHHHHHHHHHHHhccccCCcE--EEEE
Q 025775 111 CFQHLQMCF-ETEERARRLLQNVSSLLKPGGY--FLGI 145 (248)
Q Consensus 111 ~~~~l~~~~-~~~~~~~~~l~~~~~~LkpgG~--~i~~ 145 (248)
|.+++.-.+ ...-.+.+.++++.+.+++.|. +++.
T Consensus 889 ailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQ 926 (1289)
T PF06016_consen 889 AILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQ 926 (1289)
T ss_dssp ECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE
T ss_pred EEeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEE
Confidence 999876432 2233578888999888888774 5555
No 322
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.43 E-value=2.4 Score=36.76 Aligned_cols=92 Identities=7% Similarity=-0.010 Sum_probs=55.2
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
..++.+||=+|||. |..+..++.. +..+++++|.++.-++.++. .+ .... .+ .+. ....
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~----~~~~-~~----~~~-----~~~g 222 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD----ETYL-ID----DIP-----EDLA 222 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC----ceee-hh----hhh-----hccC
Confidence 35789999999986 4444454443 44589999999887777653 11 1111 11 111 1124
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+-.-.-. .....+....+.|++||.+++.
T Consensus 223 ~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 223 VDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence 88886433210 0234567777899999998765
No 323
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.22 E-value=7.6 Score=36.72 Aligned_cols=104 Identities=12% Similarity=0.043 Sum_probs=65.9
Q ss_pred CeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 33 ~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
.+|+=+|+|. |..+..........++.+|.+++.++.+++. + ...+.+|+++.+..+.. .-.+.|++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a--gi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAA--GAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhc--CCccCCEEEE
Confidence 5677788776 5444443333333899999999998877642 2 56789999886654322 2356787766
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~ 153 (248)
.. .+.+....+... .+.+.|...++....+.....
T Consensus 471 ~~------~d~~~n~~i~~~-~r~~~p~~~IiaRa~~~~~~~ 505 (601)
T PRK03659 471 TC------NEPEDTMKIVEL-CQQHFPHLHILARARGRVEAH 505 (601)
T ss_pred Ee------CCHHHHHHHHHH-HHHHCCCCeEEEEeCCHHHHH
Confidence 43 334444444444 455789988888776664433
No 324
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=88.12 E-value=2.3 Score=34.70 Aligned_cols=64 Identities=16% Similarity=-0.011 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (248)
..+-|.+||.|.|+.+..+..++.+++..+++++..+.-.+-..+... .+....+.|+....+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~I~ 113 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFKIE 113 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceehHH
Confidence 356799999999999999998888899999999988765544433222 3466777887654443
No 325
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.10 E-value=5.9 Score=37.63 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=65.7
Q ss_pred CCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 32 YVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 32 ~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
..+|+=+|||. |..+...... +. .++.+|.+++.++.+++. + ...+.+|.++.+..... .-.+.|++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a--gi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA--GAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc--CCCcCCEE
Confidence 46789999996 6555444443 44 899999999998887642 2 56799999887654321 23578877
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 151 (248)
++.. .+.+....+.. ..+.+.|+-.++....+...
T Consensus 469 vv~~------~d~~~n~~i~~-~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 469 INAI------DDPQTSLQLVE-LVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred EEEe------CCHHHHHHHHH-HHHHhCCCCeEEEEECCHHH
Confidence 6643 33443333334 44456788777777666544
No 326
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.04 E-value=1.4 Score=38.29 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC-ceeEEE
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN-QADLVC 110 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~fD~V~ 110 (248)
..+++|+-||.|+....+...++.-+.++|+++.+++.-+..+.. ..++..|+........ .. .+|+++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCEEE
Confidence 457999999999999989888887899999999988765555432 3456666654332211 12 788887
Q ss_pred ecc
Q 025775 111 CFQ 113 (248)
Q Consensus 111 ~~~ 113 (248)
...
T Consensus 73 gGp 75 (328)
T COG0270 73 GGP 75 (328)
T ss_pred eCC
Confidence 754
No 327
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.56 E-value=3.5 Score=29.91 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=53.9
Q ss_pred CeEEEEcCCCCccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 33 VTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
.+|.|+|-|.=.... .++..++ .++++||++. .| . .+ +.+..-|++++.+.- -...|+|.+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a----~-~g----~~~v~DDitnP~~~i-----Y~~A~lIYS 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TA----P-EG----LRFVVDDITNPNISI-----YEGADLIYS 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cC----c-cc----ceEEEccCCCccHHH-----hhCccceee
Confidence 489999998754444 3444466 8999999876 11 1 23 789999998877631 235677765
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.- +...+...+-.+.+.++. .+++.
T Consensus 77 iR-------pppEl~~~ildva~aVga--~l~I~ 101 (129)
T COG1255 77 IR-------PPPELQSAILDVAKAVGA--PLYIK 101 (129)
T ss_pred cC-------CCHHHHHHHHHHHHhhCC--CEEEE
Confidence 43 444455555555555443 44444
No 328
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.16 E-value=4.6 Score=35.18 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=56.1
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (248)
+.++.+||=.|||. |..+..+++. +...++++|.++.-++.+++. +. ..++ +..+.+....+.. ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga---~~~i--~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GA---THTV--NSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CC---ceEE--cCCCcCHHHHHHHHhCCC
Confidence 45788999998864 4444555554 444699999999888777532 10 1122 2222222211111 123
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+|+|+-... .. ..+....+.+++||.++..
T Consensus 245 g~d~vid~~g------~~----~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVIDAVG------RP----ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEECCC------CH----HHHHHHHHHhccCCEEEEE
Confidence 5898864321 11 2345556788999998876
No 329
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.96 E-value=16 Score=29.21 Aligned_cols=33 Identities=15% Similarity=0.015 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCC
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA 63 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis 63 (248)
.+.+||=+|||. |..+ ..++..+.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 468899999995 5433 44455688899999977
No 330
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.93 E-value=1.9 Score=38.62 Aligned_cols=85 Identities=13% Similarity=0.048 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
++.+|+=+|||+ |..+...+.. +. +|+.+|+++.-++.|+.. + +... +. .+. -...|+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G----~~~~--~~-----~e~----v~~aDV 260 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----G----YEVM--TM-----EEA----VKEGDI 260 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----C----CEEc--cH-----HHH----HcCCCE
Confidence 789999999997 5444444444 55 899999998877666532 2 1111 11 111 135798
Q ss_pred EEeccchhhhcCCHHHHHHHHH-HHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~-~~~~~LkpgG~~i~~ 145 (248)
|+..-. + ..++. ...+.+++||+++..
T Consensus 261 VI~atG------~----~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 261 FVTTTG------N----KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EEECCC------C----HHHHHHHHHhcCCCCcEEEEe
Confidence 876331 1 12333 347889999999776
No 331
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.77 E-value=7.5 Score=35.87 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=64.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCC-chhhhhcccC
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAE-NFETQMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~-~~~~~~~~~~ 103 (248)
|+..|.|..||+|+++...... ....++|.+..+++...|+....-++... ......+|-... +.. ..
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~-----~~ 291 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWE-----NE 291 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcccc-----cc
Confidence 6678999999999988654321 12369999999999988876532222100 112223332221 110 13
Q ss_pred CceeEEEeccch--hh------------------hcC-CHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 104 NQADLVCCFQHL--QM------------------CFE-TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 104 ~~fD~V~~~~~l--~~------------------~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
.+||.|++.--. .+ ++. ....-..++..+...|++||...+..|+.
T Consensus 292 ~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 292 NGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred ccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 457776653211 00 000 01123467778888999999877665543
No 332
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=85.77 E-value=2.8 Score=35.43 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (248)
Q Consensus 23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~ 76 (248)
.+|..+..++..|||.-+|+|..+......+- ..+|+|+++..++.+..|...
T Consensus 214 r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 214 RLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHhcCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHh
Confidence 34555778999999999999987666555454 899999999999999998865
No 333
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.34 E-value=2 Score=39.66 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-------------Cchh
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-------------ENFE 96 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-------------~~~~ 96 (248)
++.+|+=+|||. |..+..++..-...++.+|.++..++.++.. + ..++..|..+ .++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHHH
Confidence 568999999997 4444444444233799999999987777652 1 2333333211 0111
Q ss_pred h----hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 97 ~----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
. .+.+.-..+|+|++...+.. .+...-+.+++.+.+|||+.++
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEE
Confidence 0 01112356999977653332 1111224556677788888766
No 334
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=84.80 E-value=7.8 Score=32.49 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=43.9
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcC------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETAL------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~------~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (248)
+.+...++|+|||.|.++..++..- ...++.||-...-. .+..+.........+.-+..|+.+.++...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~~~ 90 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLSKL 90 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchhhc
Confidence 3577899999999999887776542 34788999755322 333333332211246777888877776543
No 335
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.50 E-value=9.4 Score=31.07 Aligned_cols=97 Identities=24% Similarity=0.218 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-cccCCcee
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~fD 107 (248)
.++.+||-.|+|. |..+..++.....++++++.++...+.++... . ...+ +.........+ ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g--~-----~~~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG--A-----DHVI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC--C-----ceec--cCCcCCHHHHHHHhcCCCCC
Confidence 5788999999986 55555555543358999999987776664321 0 1111 11111111110 11245799
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+..... . ..+..+.+.|+++|.++..
T Consensus 204 ~vi~~~~~------~----~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 204 VVIDAVGG------P----ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEEECCCC------H----HHHHHHHHhcccCCEEEEE
Confidence 98754321 1 3456667788999998876
No 336
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.96 E-value=5.8 Score=34.77 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=56.0
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=.|+|. |..+..+++. +...|+++|.++.-++.+++. +. ..++ +..+.++.+.+.. ..+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga---~~~i--~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GA---TATV--NAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CC---ceEe--CCCchhHHHHHHHHhCCC
Confidence 45788888899874 4444555554 444799999999888777542 10 1111 1122222211111 1236
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+-... . ...+....+.|+++|.++..
T Consensus 260 ~d~vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 260 VDYAFEMAG------S----VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCEEEECCC------C----hHHHHHHHHHHhcCCEEEEE
Confidence 898864321 1 12455566788999998865
No 337
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=83.75 E-value=21 Score=29.69 Aligned_cols=108 Identities=12% Similarity=0.015 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCCccHhHHHH---c---CCCeEEEEeCChH--------------------------HHHHHHHHHHhcC
Q 025775 31 PYVTVCDLYCGAGVDVDKWET---A---LIANYIGIDVATS--------------------------GIGEARDTWENQR 78 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~---~---~~~~v~giDis~~--------------------------~l~~a~~~~~~~~ 78 (248)
-...|+|+||-.|+.+..++. . ...+++++|.=.. .++..++.+...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 346799999999986654432 1 2347888883211 2222332222211
Q ss_pred -CCceEEEEEcCCCCCchhhhhcc-cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 79 -KNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 79 -~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
...++.++.+.+.+ .++. +..++-++.+-. .--++...+|+.+...|.|||++++.-.+.
T Consensus 154 l~~~~v~~vkG~F~d-----TLp~~p~~~IAll~lD~------DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPD-----TLPDAPIERIALLHLDC------DLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TSSTTEEEEES-HHH-----HCCC-TT--EEEEEE---------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CCcccEEEECCcchh-----hhccCCCccEEEEEEec------cchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 12357888887522 2211 223343332222 335568889999999999999999985444
No 338
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.38 E-value=6.1 Score=30.69 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=40.2
Q ss_pred EEEcCCCCCchhhhhcccCCceeEEEeccchhh---------hcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQM---------CFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~---------~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
....|++...- .......+||.|+-++-... +-.+..-+..+++.+..+|+++|.+.++..++
T Consensus 57 ~~~VDat~l~~--~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 57 LHGVDATKLHK--HFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred ccCCCCCcccc--cccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45666655332 22224678999977652111 00112346789999999999999999996665
No 339
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.31 E-value=3.2 Score=36.82 Aligned_cols=45 Identities=9% Similarity=-0.056 Sum_probs=33.7
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~ 74 (248)
+.|+++||-|++|....+ .++..++++|+++|+||..+...+-+.
T Consensus 33 i~~~d~vl~ItSaG~N~L-~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNAL-DYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccCCchHH-HHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 348899999987665544 445667779999999999887655443
No 340
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.11 E-value=13 Score=34.70 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=60.1
Q ss_pred CeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 33 ~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
.+|+=+|||. |..+.........+++.+|.+++.++.+++. + ...+.+|..+....+.. .-++.|.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----g----~~~i~GD~~~~~~L~~a--~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER----G----IRAVLGNAANEEIMQLA--HLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----C----CeEEEcCCCCHHHHHhc--CccccCEEEE
Confidence 5677788886 5444433333333899999999988877642 2 66899999886543221 2357786654
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
.. .+.+........+ +.+.|+..++....+.
T Consensus 488 ~~------~~~~~~~~iv~~~-~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 488 TI------PNGYEAGEIVASA-REKRPDIEIIARAHYD 518 (558)
T ss_pred Ec------CChHHHHHHHHHH-HHHCCCCeEEEEECCH
Confidence 22 1222222333433 4457888887776554
No 341
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.11 E-value=2.3 Score=30.90 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=51.1
Q ss_pred CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc--CCceeEEEeccchhhhcC
Q 025775 43 GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFE 120 (248)
Q Consensus 43 G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~fD~V~~~~~l~~~~~ 120 (248)
|..+..+++....+++++|.++.-++.+++.-. ..++.. .+.++.+.+.+. ...+|+|+-...
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~--~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDY--SDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEET--TTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------cccccc--cccccccccccccccccceEEEEecC------
Confidence 444555555433799999999998888875321 122222 222233333222 247999865432
Q ss_pred CHHHHHHHHHHHhccccCCcEEEEE
Q 025775 121 TEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 121 ~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
. ...++....+|+++|.+++.
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEE
T ss_pred c----HHHHHHHHHHhccCCEEEEE
Confidence 1 24677777899999999987
No 342
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=82.63 E-value=8.4 Score=33.46 Aligned_cols=94 Identities=11% Similarity=0.026 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeC---ChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDV---ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDi---s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
.++.+||=+|+|. |..+..+++....++++++. ++.-++.+++ .+ +..+ +..+.+... .. ....
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~G----a~~v--~~~~~~~~~-~~-~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LG----ATYV--NSSKTPVAE-VK-LVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cC----CEEe--cCCccchhh-hh-hcCC
Confidence 4788999999875 55555555543337999987 5555555542 22 2222 222222111 11 1346
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+-... . ...+....+.|++||.+++.
T Consensus 239 ~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 239 FDLIIEATG------V----PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCEEEECcC------C----HHHHHHHHHHccCCcEEEEE
Confidence 898865432 1 12466677889999998765
No 343
>PLN02740 Alcohol dehydrogenase-like
Probab=82.60 E-value=8.4 Score=33.94 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=55.3
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=+|||. |..+..+++. +...|+++|.+++-++.+++. +. ..++...-.+.++.+.+.. ..+.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga---~~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GI---TDFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CC---cEEEecccccchHHHHHHHHhCCC
Confidence 45788999999875 4444455544 444799999999888877542 11 1122211111112211111 1236
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~ 145 (248)
+|+|+-... .. ..+......+++| |.+++.
T Consensus 269 ~dvvid~~G------~~----~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 269 VDYSFECAG------NV----EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCEEEECCC------Ch----HHHHHHHHhhhcCCCEEEEE
Confidence 898865432 11 2455555677886 887665
No 344
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=82.43 E-value=2.8 Score=30.95 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCccH-hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGAGVDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~-~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
+..+|.|+|-|.=... ..+...+. .|+++|+.+. .|. .+ +.++.-|++++.+.- =...|+|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a~-----~g----~~~v~DDif~P~l~i-----Y~~a~lI 74 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KAP-----EG----VNFVVDDIFNPNLEI-----YEGADLI 74 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S------------S----TTEE---SSS--HHH-----HTTEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---ccc-----cC----cceeeecccCCCHHH-----hcCCcEE
Confidence 3459999999975444 44444566 9999999987 111 22 668999998877631 2468898
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 151 (248)
.+.- +..+++..+-++.+. -|.-+++.....+.
T Consensus 75 YSiR-------PP~El~~~il~lA~~--v~adlii~pL~~e~ 107 (127)
T PF03686_consen 75 YSIR-------PPPELQPPILELAKK--VGADLIIRPLGGES 107 (127)
T ss_dssp EEES---------TTSHHHHHHHHHH--HT-EEEEE-BTTB-
T ss_pred EEeC-------CChHHhHHHHHHHHH--hCCCEEEECCCCCC
Confidence 7654 333344455555443 35567776555443
No 345
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.37 E-value=8.3 Score=32.89 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc----hhhhhcccC
Q 025775 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN----FETQMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~ 103 (248)
.|..||==|.|.|- .+..+++.+. .+...|+++...++..+.....+ ++....+|+.+.. ....+...-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57788888888762 1233344455 89999999999988777766543 5889999998732 122333345
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
+..|+++++.++
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 789999887755
No 346
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.19 E-value=25 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCC
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA 63 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis 63 (248)
...+|+=+|||. |..+ ..++..+.++++-+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 568899999994 5443 45555688889999987
No 347
>PRK11524 putative methyltransferase; Provisional
Probab=81.91 E-value=1.6 Score=37.02 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCchhhhhcccCCceeEEEecc--ch--hh--h---cC---CHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 83 AEFFEADPCAENFETQMQEKANQADLVCCFQ--HL--QM--C---FE---TEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~--~l--~~--~---~~---~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
..++++|+.+. ...+ +++++|+|++.- .. .+ . +. ..+.+...+.++.++|||||.+++..
T Consensus 9 ~~i~~gD~~~~--l~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTE--LKKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHH--HHhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 35677777441 1112 357889888842 11 00 0 00 11235689999999999999998863
No 348
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=81.84 E-value=6.3 Score=33.03 Aligned_cols=97 Identities=16% Similarity=0.066 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+||=+|+|. |..+..+++. +...++++|.++.-++.+++.-. ...+..+-...... ... ....+|
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~-~~~-~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA-------TALAEPEVLAERQG-GLQ-NGRGVD 189 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-------cEecCchhhHHHHH-HHh-CCCCCC
Confidence 3788999998875 4444445444 55459999999887776654211 01111110000010 010 123589
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+-... . ...+....+.|+++|.++..
T Consensus 190 ~vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 190 VALEFSG------A----TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEEECCC------C----hHHHHHHHHHhcCCCEEEEe
Confidence 8865321 1 23456667789999999875
No 349
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=81.55 E-value=11 Score=32.45 Aligned_cols=90 Identities=13% Similarity=-0.037 Sum_probs=53.0
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
..++.+||=.|+|. |..+..+++..-.++++++.++.-++.+++. + +..+ .|..+. ..+.+|
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----G----a~~v-i~~~~~--------~~~~~d 225 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----G----AASA-GGAYDT--------PPEPLD 225 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----C----Ccee-cccccc--------Ccccce
Confidence 45788999999864 4334444444333799999998877776653 1 1111 111110 123577
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+++.... . ...+....+.|++||.+++.
T Consensus 226 ~~i~~~~-------~---~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAILFAP-------A---GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEECCC-------c---HHHHHHHHHhhCCCcEEEEE
Confidence 6543221 1 12566777899999999876
No 350
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.54 E-value=21 Score=28.55 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCC-Ccc-HhHHHHcCCCeEEEEeCC---hHHHHH---------------HHHHHHhcCCCceEEEEEcCC
Q 025775 31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVA---TSGIGE---------------ARDTWENQRKNFIAEFFEADP 90 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~-~~~l~~~~~~~v~giDis---~~~l~~---------------a~~~~~~~~~~~~~~~~~~d~ 90 (248)
...+|+=+|||. |.. +..++..+.++++-+|.+ +..+.. +++++...+...++.....++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i 99 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKI 99 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeC
Confidence 467899999995 433 345556688889999988 443321 122222222223344444454
Q ss_pred CCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC
Q 025775 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp 138 (248)
....+.+. -..+|+|+... ++.+....+.+.+.+.++.
T Consensus 100 ~~~~~~~~----~~~~DlVi~a~------Dn~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 100 TEENIDKF----FKDADIVCEAF------DNAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred CHhHHHHH----hcCCCEEEECC------CCHHHHHHHHHHHHHHcCC
Confidence 43332211 24689887642 4455555666666666654
No 351
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.46 E-value=9 Score=34.09 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=47.8
Q ss_pred CeEEEEcCCC-CccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775 33 VTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (248)
Q Consensus 33 ~~VLDlGcG~-G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~ 110 (248)
.+||=||||. |+... .+++.+..+|+..|-|++..+.+...... +++..+.|+.+.+-...+ -..+|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~l---i~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVAL---IKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHH---HhcCCEEE
Confidence 5789999976 43332 33444546999999999888777654322 488899999775322111 23458887
Q ss_pred ecc
Q 025775 111 CFQ 113 (248)
Q Consensus 111 ~~~ 113 (248)
+..
T Consensus 74 n~~ 76 (389)
T COG1748 74 NAA 76 (389)
T ss_pred EeC
Confidence 644
No 352
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=81.35 E-value=1.7 Score=38.83 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=47.3
Q ss_pred hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCC
Q 025775 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADP 90 (248)
Q Consensus 28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~ 90 (248)
..++|..|.|+.||-|-++...+..+. .|++-|.++++++..+....-+... ..++.+.+|+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 556899999999999999888877774 9999999999999887755433221 1256666665
No 353
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=81.12 E-value=5.6 Score=33.90 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
++.+||=+|||. |..+..+++. +...+.++|.++..++.|... . .+ |..+. ....+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--------~~~g~Dv 203 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--------PRRDYRA 203 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--------cCCCCCE
Confidence 567888889875 5555556554 555677889888776655421 0 11 11100 1245888
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+-...- ...+..+.+.|+++|.+++.
T Consensus 204 vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 204 IYDASGD----------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred EEECCCC----------HHHHHHHHHhhhcCcEEEEE
Confidence 8654321 12456667789999999865
No 354
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=80.60 E-value=16 Score=32.62 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=56.5
Q ss_pred cCCCCeEEEEc-CCC-CccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhcc-
Q 025775 29 SHPYVTVCDLY-CGA-GVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE- 101 (248)
Q Consensus 29 ~~~~~~VLDlG-cG~-G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~- 101 (248)
+.++.+||=+| +|. |..+..++.. +..+++++|.++.-++.+++.+........+.....|..+ .++...+.+
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 34778888887 454 6555555554 2347999999999988887643211000001111122211 122221111
Q ss_pred -cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 102 -KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 102 -~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
....+|+|+.... . ...+....+.++++|.+++.
T Consensus 253 t~g~g~D~vid~~g------~----~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVP------V----PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCC------C----HHHHHHHHHHhccCCeEEEE
Confidence 2346898865321 1 13455667788888865543
No 355
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=80.10 E-value=13 Score=35.45 Aligned_cols=119 Identities=11% Similarity=0.151 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCCCccHhHHHH-------c-C-----CCeEEEEeCCh---HHHHHHHHHHH-----------h-----cC
Q 025775 31 PYVTVCDLYCGAGVDVDKWET-------A-L-----IANYIGIDVAT---SGIGEARDTWE-----------N-----QR 78 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~-------~-~-----~~~v~giDis~---~~l~~a~~~~~-----------~-----~~ 78 (248)
+..+|||+|=|+|........ . + .-++++++..| +.+..+.+.+. . .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 457999999999985543321 1 1 12788999654 33333321110 0 01
Q ss_pred C--------CceEEEEEcCCCCCchhhhhcccCCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 79 K--------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 79 ~--------~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
. ...+.+..+|+.+ .++.....+|+++.-. +... .+.-....++..+.++++|||.+.- ...+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~-----~~~~~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~t-~t~a 208 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANE-----LLPQLDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLAT-FTSA 208 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHH-----HHHhccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEEE-eehH
Confidence 0 1134455666532 2221235699997643 2221 1222357899999999999998874 4444
Q ss_pred hHHHHHHH
Q 025775 150 STIWAKYQ 157 (248)
Q Consensus 150 ~~~~~~~~ 157 (248)
..+++-+.
T Consensus 209 ~~vr~~l~ 216 (662)
T PRK01747 209 GFVRRGLQ 216 (662)
T ss_pred HHHHHHHH
Confidence 55555554
No 356
>PLN02827 Alcohol dehydrogenase-like
Probab=78.49 E-value=13 Score=32.74 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=.|+|. |..+..+++. +...++++|.++.-++.|++. +. ..++...-.+.+....+.. ..+.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga---~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GV---TDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC---cEEEcccccchHHHHHHHHHhCCC
Confidence 45789999998865 4444444443 555689999998877766432 21 1122111000122211111 1236
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~ 145 (248)
+|+|+-... .. ..+....+.+++| |.++..
T Consensus 264 ~d~vid~~G------~~----~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 264 ADYSFECVG------DT----GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCEEEECCC------Ch----HHHHHHHHhhccCCCEEEEE
Confidence 898865332 11 2345566678898 998764
No 357
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.94 E-value=5.9 Score=33.78 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHH
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~ 75 (248)
++.+|.-||+|....+.++ ...++++.++|+++..|+..+-+..
T Consensus 63 ~ghrivtigSGGcn~L~yl-sr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYL-SRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCcEEEEecCCcchHHHHh-hcCCceeEEEeCCHHHHHHHHHHHH
Confidence 5789999999876655555 4455599999999999887665543
No 358
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=77.83 E-value=19 Score=30.89 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=54.0
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (248)
..++.+||=+|+|. |..+..+++. +...++++|.+++-++.+++. +. ..++ |..+.+ ...+.. ...
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga---~~~i--~~~~~~-~~~~~~~~~~~ 230 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GA---DFVI--NSGQDD-VQEIRELTSGA 230 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CC---CEEE--cCCcch-HHHHHHHhCCC
Confidence 34788999998764 4444444444 554499999998877776542 10 1111 111111 111111 233
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+|+|+-... . ...+....+.|+++|.+++.
T Consensus 231 ~~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIECSG------N----TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCEEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 6999864321 1 12345556788999999865
No 359
>PRK10458 DNA cytosine methylase; Provisional
Probab=77.67 E-value=4.9 Score=36.68 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Q 025775 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~ 93 (248)
..+++|+-||.|++...+...+...+.++|+++.+.+.-+..+.... ....+..|+.+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p---~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP---ATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC---ccceeccChhhC
Confidence 45999999999999999888888778899999987765444431111 133455666554
No 360
>PRK13699 putative methylase; Provisional
Probab=77.53 E-value=2.6 Score=34.51 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhccccCCcEEEEE
Q 025775 123 ERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 123 ~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+-....+.++.++|||||.+++.
T Consensus 49 ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 49 EWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEE
Confidence 34578899999999999998764
No 361
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=77.13 E-value=7.1 Score=33.46 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
++.+||-.|||. |..+..+++. +...+++++.++...+.+++. . . -.++ |.....+.. .....+.+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g-~-----~~vi--~~~~~~~~~-~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G-A-----DETV--NLARDPLAA-YAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C-C-----CEEE--cCCchhhhh-hhccCCCccE
Confidence 688899998875 5555555554 444789999988887755442 1 1 1112 111111111 1111245899
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+..... ...++.+.+.|+++|.++..
T Consensus 235 vld~~g~----------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 235 VFEASGA----------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 8754321 12456777889999999865
No 362
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=77.04 E-value=6.3 Score=33.95 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
++.+|.=||-|. |..+.+++....+.|+-+|+|.+-+.+....+.. ++....... ..+.+ .-.+.|+|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~-----rv~~~~st~--~~iee----~v~~aDlv 235 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG-----RVHTLYSTP--SNIEE----AVKKADLV 235 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc-----eeEEEEcCH--HHHHH----HhhhccEE
Confidence 456788899886 7777777766556999999999888777665543 244444332 12222 23578998
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 148 (248)
+..-.+. ......-..+++.+.||||+.++=.-.|
T Consensus 236 IgaVLIp----gakaPkLvt~e~vk~MkpGsVivDVAiD 270 (371)
T COG0686 236 IGAVLIP----GAKAPKLVTREMVKQMKPGSVIVDVAID 270 (371)
T ss_pred EEEEEec----CCCCceehhHHHHHhcCCCcEEEEEEEc
Confidence 7654332 2333455677888899999998755444
No 363
>PRK08267 short chain dehydrogenase; Provisional
Probab=76.96 E-value=39 Score=27.60 Aligned_cols=78 Identities=8% Similarity=-0.053 Sum_probs=46.0
Q ss_pred CeEEEEcCCCC--ccH-hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh-hhcc---c-CC
Q 025775 33 VTVCDLYCGAG--VDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-QMQE---K-AN 104 (248)
Q Consensus 33 ~~VLDlGcG~G--~~~-~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~---~-~~ 104 (248)
.++|=.|++.| ..+ ..++..+. +|+.++.+++.++........ .++.++++|+.+..-.. .+.. . .+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 35777776543 222 23344455 899999998877666544332 24788999997743211 1111 1 45
Q ss_pred ceeEEEeccch
Q 025775 105 QADLVCCFQHL 115 (248)
Q Consensus 105 ~fD~V~~~~~l 115 (248)
+.|+|+...+.
T Consensus 77 ~id~vi~~ag~ 87 (260)
T PRK08267 77 RLDVLFNNAGI 87 (260)
T ss_pred CCCEEEECCCC
Confidence 78988776543
No 364
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.25 E-value=24 Score=31.73 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
+..+|+=+|+|. |..+...+......++.+|.+++.++..+.... .+.++.+|..+....... .-..+|.|
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~------~~~~i~gd~~~~~~L~~~--~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP------NTLVLHGDGTDQELLEEE--GIDEADAF 301 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC------CCeEEECCCCCHHHHHhc--CCccCCEE
Confidence 467899898875 333332223323389999999998877665432 156789998765432211 23567877
Q ss_pred Eec
Q 025775 110 CCF 112 (248)
Q Consensus 110 ~~~ 112 (248)
++.
T Consensus 302 i~~ 304 (453)
T PRK09496 302 IAL 304 (453)
T ss_pred EEC
Confidence 653
No 365
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.47 E-value=33 Score=29.80 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=57.1
Q ss_pred cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=.|+ | .|..+..+++....++++++.+++-.+.+++.+.. ...+... ...++...+.. ..+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa------~~vi~~~-~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF------DEAFNYK-EEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC------CEEEECC-CcccHHHHHHHHCCCC
Confidence 457899999998 3 46666666665334799999888776665532211 1112111 01122221111 1246
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+.... . ..+..+.+.|++||.++..
T Consensus 229 vD~v~d~vG-------~----~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDNVG-------G----DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEECCC-------H----HHHHHHHHHhccCCEEEEE
Confidence 898864331 1 2456677889999998865
No 366
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=74.42 E-value=23 Score=30.34 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=54.4
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (248)
..++.+||-.|+|. |..+..++.. +...+++++.++...+.++.. +. ..++.. .+..+...+.. ..+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~--~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GA---TDIINP--KNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CC---cEEEcC--CcchHHHHHHHHcCCC
Confidence 34678888887753 5555555554 434788998887766655432 10 112211 11222221111 235
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+|+|+..... ...+....+.|+++|.++..
T Consensus 236 ~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGF----------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 68988653211 13566677888999998865
No 367
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=73.97 E-value=11 Score=28.85 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=53.8
Q ss_pred eEEEEcCCC-C-ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 34 TVCDLYCGA-G-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 34 ~VLDlGcG~-G-~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
+|-=||+|. | ..+..+...+. .|++.|.+++..+...+. + + ...+- ..+. -...|+|++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~----g----~--~~~~s----~~e~----~~~~dvvi~ 63 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA----G----A--EVADS----PAEA----AEQADVVIL 63 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT----T----E--EEESS----HHHH----HHHBSEEEE
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh----h----h--hhhhh----hhhH----hhcccceEe
Confidence 455577775 2 22334444566 899999998776654432 2 1 22221 1111 134588865
Q ss_pred ccchhhhcCCHHHHHHHHHH--HhccccCCcEEEEEecChhHHHHHHHH
Q 025775 112 FQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDSSTIWAKYQK 158 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~--~~~~LkpgG~~i~~~~~~~~~~~~~~~ 158 (248)
. +.+.+..+.++.. +...|++|.+++-..........++.+
T Consensus 64 ~------v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~ 106 (163)
T PF03446_consen 64 C------VPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE 106 (163)
T ss_dssp -------SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH
T ss_pred e------cccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh
Confidence 3 2456778888888 889999998888764444433444443
No 368
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.91 E-value=31 Score=30.98 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=52.8
Q ss_pred eEEEEcCCC-CccHhHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 34 TVCDLYCGA-GVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 34 ~VLDlGcG~-G~~~~~l~~-~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
+|+=+|||. |..+...+. .+. .++.+|.+++.++.++.. .+ +..+.+|..+....... .-..+|.|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~---~~----~~~~~gd~~~~~~l~~~--~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDR---LD----VRTVVGNGSSPDVLREA--GAEDADLLIA 71 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---cC----EEEEEeCCCCHHHHHHc--CCCcCCEEEE
Confidence 567777764 333322222 344 899999999887766542 12 67888998764332211 2356887765
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
.. . .+.....+....+.+.|.-.+++.+
T Consensus 72 ~~------~-~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 72 VT------D-SDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred ec------C-ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 43 1 1223334444455554555555544
No 369
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=73.59 E-value=15 Score=30.03 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=44.7
Q ss_pred eEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEec
Q 025775 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (248)
Q Consensus 34 ~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~ 112 (248)
+++=+|||. |..+...+......|+.+|.+++.++.....- .....+++|.++....... .-..+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~a--gi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEA--GIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhc--CCCcCCEEEEe
Confidence 567789986 44443333333338999999999877633311 1267889999876553322 34578888663
No 370
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=73.34 E-value=14 Score=31.31 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=54.8
Q ss_pred CeEEEEcCCC-Cc-cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc----------CCC---------ceEEEEEcCCC
Q 025775 33 VTVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQ----------RKN---------FIAEFFEADPC 91 (248)
Q Consensus 33 ~~VLDlGcG~-G~-~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~----------~~~---------~~~~~~~~d~~ 91 (248)
.+|.=||+|+ |. .+..++..+. +|+.+|.+++.++.+.++.... +.. .++.. ..|
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~-- 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STS-- 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCC--
Confidence 4577889996 32 3344445565 8999999999998776543321 000 00000 011
Q ss_pred CCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 92 AENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 92 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
.. .-...|+|+..- .+..+....+++++.+.++|+.+++
T Consensus 80 ---~~-----~~~~aDlVieav-----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 80 ---YE-----SLSDADFIVEAV-----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ---HH-----HhCCCCEEEEcC-----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 10 123468875532 2344456788888988888887654
No 371
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.34 E-value=41 Score=26.15 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=22.3
Q ss_pred eEEEEcCCC-CccH-hHHHHcCCCeEEEEeCCh
Q 025775 34 TVCDLYCGA-GVDV-DKWETALIANYIGIDVAT 64 (248)
Q Consensus 34 ~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis~ 64 (248)
+|+=+|||. |... ..++..+.++++-+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899984 5544 444556888899999876
No 372
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.97 E-value=25 Score=30.33 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=55.4
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (248)
..++.+||=.|+|. |..+..+++. +...++++|.+++..+.++.. +. ...+ +..+.++...+.. ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~---~~~v--~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GA---TDIV--DYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---ceEe--cCCCCCHHHHHHHHhCCC
Confidence 44788898888763 4444444444 555699999998877666542 10 1111 1111222111111 234
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+|+|+.... . ...+..+.+.|+++|.++..
T Consensus 235 ~~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGG------G----QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCC------C----HHHHHHHHHHhhcCCEEEEe
Confidence 6898864321 1 13566778889999998854
No 373
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=72.66 E-value=4.7 Score=31.70 Aligned_cols=95 Identities=21% Similarity=0.177 Sum_probs=56.1
Q ss_pred eEEEEcCCC-C-ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh-------cCC---------CceEEEEEcCCCCCch
Q 025775 34 TVCDLYCGA-G-VDVDKWETALIANYIGIDVATSGIGEARDTWEN-------QRK---------NFIAEFFEADPCAENF 95 (248)
Q Consensus 34 ~VLDlGcG~-G-~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~-------~~~---------~~~~~~~~~d~~~~~~ 95 (248)
+|.=+|+|+ | +.+..++..+. +|+.+|.+++.++.+.++... .+. ..++. ...|+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl----- 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDL----- 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSG-----
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCH-----
Confidence 356688886 3 23334444566 999999999999988776543 110 00122 12222
Q ss_pred hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
. +.. ..|+|+=. ..+..+.-.++++++.+.+.|+-+|.-.
T Consensus 74 ~----~~~-~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 74 E----EAV-DADLVIEA-----IPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp G----GGC-TESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred H----HHh-hhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 1 112 67877432 2467888899999999999999887654
No 374
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=72.64 E-value=7 Score=34.71 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=46.8
Q ss_pred ceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775 81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 81 ~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
.++.++++++.+ .... .+++++|.++....+-| .+.+...+.++.+.+.++|||.++.-.
T Consensus 275 drv~i~t~si~~--~L~~--~~~~s~~~~vL~D~~Dw--m~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEE--VLRR--LPPGSFDRFVLSDHMDW--MDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHH--HHHh--CCCCCeeEEEecchhhh--CCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 457888877633 2111 14789999998888777 567899999999999999999999873
No 375
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=72.60 E-value=18 Score=31.34 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=32.2
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHH
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARD 72 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~ 72 (248)
..++.+||=+|||. |..+..++.....+++++|.+++-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 45789999999975 555555555533379999999998887754
No 376
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=72.44 E-value=45 Score=29.10 Aligned_cols=79 Identities=16% Similarity=0.044 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCChH---------------------HHHHHHHHHHhcCCCceEEEEE
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVATS---------------------GIGEARDTWENQRKNFIAEFFE 87 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis~~---------------------~l~~a~~~~~~~~~~~~~~~~~ 87 (248)
.+.+||=+|||. |..+ ..++..+.++++-+|.+.- =.+.|+++....+...+++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 467899999995 4433 4555668889999998741 1233444555444445566677
Q ss_pred cCCCCCchhhhhcccCCceeEEEecc
Q 025775 88 ADPCAENFETQMQEKANQADLVCCFQ 113 (248)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~fD~V~~~~ 113 (248)
.++....+.+. -..+|+|+...
T Consensus 103 ~~~~~~~~~~~----~~~~DlVid~~ 124 (338)
T PRK12475 103 TDVTVEELEEL----VKEVDLIIDAT 124 (338)
T ss_pred ccCCHHHHHHH----hcCCCEEEEcC
Confidence 77654333222 34689887643
No 377
>PRK06701 short chain dehydrogenase; Provisional
Probab=72.12 E-value=58 Score=27.37 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChH-HHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hccc
Q 025775 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATS-GIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~-~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~ 102 (248)
++.+||=.|++.|- .+..+++.+. +|+.++.++. .++.........+ .++.++.+|+.+..-... ....
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35678888865542 1123334455 7888887753 2333333333222 347789999977432111 1112
Q ss_pred CCceeEEEeccchhhh---c--CCHH-----------HHHHHHHHHhccccCCcEEEEE
Q 025775 103 ANQADLVCCFQHLQMC---F--ETEE-----------RARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 103 ~~~fD~V~~~~~l~~~---~--~~~~-----------~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
-+..|+|+........ + .+.+ ..-.+++.+...++++|.++.+
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 2468888755432110 0 1111 1234555666666777777765
No 378
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.80 E-value=31 Score=29.73 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=53.1
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhcccCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~ 105 (248)
..++.+||=.|||. |..+..+++. +...++++|.+++-++.+++. +. ..++..+-.. ....... ....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga---~~~i~~~~~~~~~~~~~~--~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GA---MQTFNSREMSAPQIQSVL--RELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC---ceEecCcccCHHHHHHHh--cCCC
Confidence 34788999998875 4444445444 554588999998877766432 10 1112111101 0111111 1235
Q ss_pred ee-EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 AD-LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD-~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+| +|+-.. .. ...+....+.|++||.+++.
T Consensus 229 ~d~~v~d~~------G~----~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 229 FDQLILETA------GV----PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCeEEEECC------CC----HHHHHHHHHHhhcCCEEEEE
Confidence 77 554311 11 23556677888999998876
No 379
>PRK07063 short chain dehydrogenase; Provisional
Probab=71.69 E-value=36 Score=27.81 Aligned_cols=82 Identities=9% Similarity=-0.120 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCCccHh----HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775 31 PYVTVCDLYCGAGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~----~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (248)
.+.+||=.|++.| ... .++..+. +|+.+|.+++.++...+.........++.++++|+.+..-.. .....
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567888887654 222 3334455 899999998887776665543212235788999997743211 11112
Q ss_pred CCceeEEEeccc
Q 025775 103 ANQADLVCCFQH 114 (248)
Q Consensus 103 ~~~fD~V~~~~~ 114 (248)
.+..|+++...+
T Consensus 84 ~g~id~li~~ag 95 (260)
T PRK07063 84 FGPLDVLVNNAG 95 (260)
T ss_pred hCCCcEEEECCC
Confidence 357898877654
No 380
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=71.30 E-value=18 Score=32.71 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.+.+|+=+|+|. |..+...+.....+|+.+|+++.....+.. .+ .. ..+ +.+. ....|+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~--v~~-----l~ea----l~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FR--VMT-----MEEA----AELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CE--ecC-----HHHH----HhCCCEE
Confidence 689999999997 443433333323389999999865443322 12 11 112 1111 2357988
Q ss_pred EeccchhhhcCCHHHHHHHHH-HHhccccCCcEEEEE
Q 025775 110 CCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~-~~~~~LkpgG~~i~~ 145 (248)
+..-. + ..++. .....+|+|++++..
T Consensus 272 I~aTG------~----~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 272 VTATG------N----KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EECCC------C----HHHHHHHHHhcCCCCCEEEEc
Confidence 76431 1 12343 567889999998877
No 381
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=70.89 E-value=36 Score=29.00 Aligned_cols=105 Identities=18% Similarity=0.007 Sum_probs=69.2
Q ss_pred CCeEEEEcCCCCccHhHHH---HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 32 YVTVCDLYCGAGVDVDKWE---TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~---~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
|..|+=+|- .++.-++ ..-+.++..+||++..|..-.+-.+..+. .+++.+..|+.++-.. . ..++||+
T Consensus 153 gK~I~vvGD---DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe-~---~~~kFDv 224 (354)
T COG1568 153 GKEIFVVGD---DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPE-D---LKRKFDV 224 (354)
T ss_pred CCeEEEEcC---chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChH-H---HHhhCCe
Confidence 566888872 2222222 22456999999999999877666555442 1277788888764322 1 2578999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCC---cEEEEEecCh
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG---GYFLGITPDS 149 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg---G~~i~~~~~~ 149 (248)
.+..- .++..-+..++..=...|+.- |+|-++...+
T Consensus 225 fiTDP-----peTi~alk~FlgRGI~tLkg~~~aGyfgiT~res 263 (354)
T COG1568 225 FITDP-----PETIKALKLFLGRGIATLKGEGCAGYFGITRRES 263 (354)
T ss_pred eecCc-----hhhHHHHHHHHhccHHHhcCCCccceEeeeeccc
Confidence 86533 234556778888888888876 8998885554
No 382
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=70.61 E-value=45 Score=27.14 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCCh
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT 64 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis~ 64 (248)
...+|+=+|||. |... ..++..+.++++-+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 367899999994 4443 344555788888886543
No 383
>PRK10083 putative oxidoreductase; Provisional
Probab=70.57 E-value=37 Score=28.96 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=54.4
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHH-c-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~-~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (248)
..++.+||=.|+|. |..+..+++ . +...++++|.+++..+.+++. + +..+ .|..+..+...+......
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----G----a~~~-i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----G----ADWV-INNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----C----CcEE-ecCccccHHHHHhcCCCC
Confidence 44788899899764 444444554 2 665688999988877766542 1 1111 111122232222212223
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+.... . ...+....+.|+++|.++..
T Consensus 229 ~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 229 PTLIIDAAC------H----PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCEEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 557654221 1 12456667889999999875
No 384
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=70.47 E-value=56 Score=28.55 Aligned_cols=78 Identities=21% Similarity=0.114 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCCh--------------H-------HHHHHHHHHHhcCCCceEEEEE
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT--------------S-------GIGEARDTWENQRKNFIAEFFE 87 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis~--------------~-------~l~~a~~~~~~~~~~~~~~~~~ 87 (248)
...+||=+|||. |..+ ..|+..+.++++-+|-+. . -.+.++++....+...++....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 468899999994 4433 455566888999999863 1 1123344444434334566666
Q ss_pred cCCCCCchhhhhcccCCceeEEEec
Q 025775 88 ADPCAENFETQMQEKANQADLVCCF 112 (248)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~fD~V~~~ 112 (248)
.++......+. -..+|+|+..
T Consensus 103 ~~~~~~~~~~~----~~~~DlVid~ 123 (339)
T PRK07688 103 QDVTAEELEEL----VTGVDLIIDA 123 (339)
T ss_pred ccCCHHHHHHH----HcCCCEEEEc
Confidence 66654333222 2468998764
No 385
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.26 E-value=54 Score=26.19 Aligned_cols=112 Identities=10% Similarity=-0.031 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCC--ccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h---cccC
Q 025775 31 PYVTVCDLYCGAG--VDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G--~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~---~~~~ 103 (248)
++.+||=.|++.| ..+. .++..+. +|++++-++..++...+.....+ ++.++.+|+.+..-... + ...-
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3568888887643 2222 2223355 89999998877665544433322 37788999976432111 1 1112
Q ss_pred CceeEEEeccchhh--hcCCHHH-----------HHHHHHHHhccccCCcEEEEEe
Q 025775 104 NQADLVCCFQHLQM--CFETEER-----------ARRLLQNVSSLLKPGGYFLGIT 146 (248)
Q Consensus 104 ~~fD~V~~~~~l~~--~~~~~~~-----------~~~~l~~~~~~LkpgG~~i~~~ 146 (248)
+..|.++....... .+...+. ...+++.+...++++|.+++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45677765443211 0011111 1233555666677788777663
No 386
>PRK05854 short chain dehydrogenase; Provisional
Probab=69.60 E-value=42 Score=28.63 Aligned_cols=83 Identities=8% Similarity=-0.158 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhccc
Q 025775 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~ 102 (248)
.+.++|=.|++.| .... ++..+. +|+.++-+.+..+.+.+.........++.++.+|+.+..-. ..+...
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 4567787776654 3333 333454 89999988877766655543322123478899999763311 112223
Q ss_pred CCceeEEEeccch
Q 025775 103 ANQADLVCCFQHL 115 (248)
Q Consensus 103 ~~~fD~V~~~~~l 115 (248)
.++.|+++...+.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 4678998876543
No 387
>PRK06128 oxidoreductase; Provisional
Probab=69.51 E-value=68 Score=27.02 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCCccHhHH----HHcCCCeEEEEeCChH--HHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcc
Q 025775 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATS--GIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE 101 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l----~~~~~~~v~giDis~~--~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~ 101 (248)
+.+||=.|++.| ....+ +..+. +|+.++.+.+ ..+...+.....+ .++.++.+|+.+..-.. ....
T Consensus 55 ~k~vlITGas~g-IG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSG-IGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCc-HHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 567888886543 33333 33455 6776665433 2222222332222 24778899997743211 1111
Q ss_pred cCCceeEEEeccchhhhcC-----CHHHH-----------HHHHHHHhccccCCcEEEEE
Q 025775 102 KANQADLVCCFQHLQMCFE-----TEERA-----------RRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~-----~~~~~-----------~~~l~~~~~~LkpgG~~i~~ 145 (248)
.-+..|+++...+...... +.+.. -.+++.+...|+++|.++.+
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 2356899887665321101 12222 23556667777888887765
No 388
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=69.07 E-value=58 Score=28.61 Aligned_cols=79 Identities=15% Similarity=-0.012 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHHhcCCCceEEEEEcC
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEAD 89 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis~-------------------~~l~~a~~~~~~~~~~~~~~~~~~d 89 (248)
...+||=+|||. |..+ ..++..+.++++-+|.+. .-.+.+.++....+...+++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 468999999995 4433 455556888888888664 1223444555554434445555555
Q ss_pred CCCCchhhhhcccCCceeEEEecc
Q 025775 90 PCAENFETQMQEKANQADLVCCFQ 113 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (248)
+......+. -..+|+|+...
T Consensus 107 i~~~~~~~~----~~~~DvVvd~~ 126 (355)
T PRK05597 107 LTWSNALDE----LRDADVILDGS 126 (355)
T ss_pred cCHHHHHHH----HhCCCEEEECC
Confidence 543222111 24699997753
No 389
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=68.91 E-value=55 Score=27.50 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=50.1
Q ss_pred eEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775 34 TVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 34 ~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
+|.=||+|. |..+..+...+. +|+++|.++..++.+... +. +..... +.. .....|+|+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~---~~~~~~-----~~~-----~~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL---VDEAST-----DLS-----LLKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC---cccccC-----CHh-----HhcCCCEEEE
Confidence 456678886 334445545555 899999999888776543 10 110001 111 1245788865
Q ss_pred ccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
.. +.....++++++...++++.++.
T Consensus 64 av-------p~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 64 AL-------PIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred cC-------CHHHHHHHHHHHHHhCCCCcEEE
Confidence 43 34456677888888888775543
No 390
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.88 E-value=18 Score=30.73 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=58.1
Q ss_pred CeEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCC---------ceEEEEEcCCCCCc
Q 025775 33 VTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAEN 94 (248)
Q Consensus 33 ~~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-------~~~---------~~~~~~~~d~~~~~ 94 (248)
.+|-=||+|+ ++.+..++..+. .|+..|.+++.++.+.++.... +.. .++. ...|
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~----- 78 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTD----- 78 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCC-----
Confidence 3688889986 233344455566 8999999999999877664321 100 0000 1111
Q ss_pred hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccc-cCCcEEEEE
Q 025775 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGI 145 (248)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-kpgG~~i~~ 145 (248)
+. .-...|+|+-. ..++.+--..++..+.+++ +|+.++.-.
T Consensus 79 ~~-----~~~~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 79 LG-----DFADRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred HH-----HhCCCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 11 12346777543 2466777788889999888 677666543
No 391
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.38 E-value=35 Score=28.98 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+||-+|+|. |..+..++.. +...++.++.+++..+.+++. +. ...+.. .+.............+|
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~---~~~~~~--~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GA---TETVDP--SREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CC---eEEecC--CCCCHHHHHHhcCCCCc
Confidence 4788999998653 5454555544 443488999998887766432 10 112221 11111110111235689
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+.... . ...+..+.+.|+++|.++..
T Consensus 229 ~v~~~~~------~----~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATG------V----PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCC------C----hHHHHHHHHHHhcCCEEEEE
Confidence 9975321 1 13456667788999998765
No 392
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=68.37 E-value=65 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCC-CccHh-HHHHcCCCeEEEEeCCh
Q 025775 31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVAT 64 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~-~l~~~~~~~v~giDis~ 64 (248)
...+||=+|||. |..+. .|+..+.++++-+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 357899999984 55443 45556888888888554
No 393
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=68.23 E-value=39 Score=23.76 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=53.0
Q ss_pred hhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecccCCC
Q 025775 115 LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEK 194 (248)
Q Consensus 115 l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 194 (248)
+|| +.++..+++..+... ..|.+++++.....+...++..-+ . |..
T Consensus 6 IHY---p~~d~~~~l~~La~~--t~~~~ifTfAP~T~~L~~m~~iG~------------l-------------FP~---- 51 (97)
T PF07109_consen 6 IHY---PAEDAAQMLAHLASR--TRGSLIFTFAPRTPLLALMHAIGK------------L-------------FPR---- 51 (97)
T ss_pred ecc---CHHHHHHHHHHHHHh--ccCcEEEEECCCCHHHHHHHHHhc------------c-------------CCC----
Confidence 576 688888888888776 567888888777777776653211 1 111
Q ss_pred CCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecC
Q 025775 195 FPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239 (248)
Q Consensus 195 ~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~ 239 (248)
+.....-|++..+.+.+.++++|+++.....
T Consensus 52 --------------~dRsp~i~~~~e~~l~~~l~~~g~~~~r~~r 82 (97)
T PF07109_consen 52 --------------PDRSPRIYPHREEDLRRALAAAGWRIGRTER 82 (97)
T ss_pred --------------CCCCCcEEEeCHHHHHHHHHhCCCeeeeccc
Confidence 1112234688899999999999999886554
No 394
>PRK08324 short chain dehydrogenase; Validated
Probab=68.02 E-value=33 Score=32.95 Aligned_cols=111 Identities=12% Similarity=0.016 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCC--ccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh-hh---cccC
Q 025775 31 PYVTVCDLYCGAG--VDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-QM---QEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G--~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~---~~~~ 103 (248)
++.+||=.|++.| ..+. .+...+. +|+.+|.++..++.+....... .++.++.+|+.+..-.. .+ ....
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678888886433 2222 2233355 8999999998776665544322 23788899987643211 11 1123
Q ss_pred CceeEEEeccchhhhc----CCHHH-----------HHHHHHHHhccccC---CcEEEEE
Q 025775 104 NQADLVCCFQHLQMCF----ETEER-----------ARRLLQNVSSLLKP---GGYFLGI 145 (248)
Q Consensus 104 ~~fD~V~~~~~l~~~~----~~~~~-----------~~~~l~~~~~~Lkp---gG~~i~~ 145 (248)
+..|+|+...+....- .+.+. ...+++.+.+.+++ ||.+++.
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5689987765422100 01111 23455666666665 6777766
No 395
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.74 E-value=35 Score=28.00 Aligned_cols=78 Identities=8% Similarity=-0.097 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhh-cc
Q 025775 31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQM-QE 101 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~-~~ 101 (248)
....||=.||..|+....++.. ++ .|+++--+-+-....... .+ +.....|+.+++-. ..+ ..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~---~g----l~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQ---FG----LKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHh---hC----CeeEEeccCChHHHHHHHHHHhhC
Confidence 4567999999999987766543 55 777776554433322211 22 44566777654321 111 22
Q ss_pred cCCceeEEEeccchh
Q 025775 102 KANQADLVCCFQHLQ 116 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~ 116 (248)
++++.|+.+.+.+..
T Consensus 78 ~~Gkld~L~NNAG~~ 92 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQS 92 (289)
T ss_pred CCCceEEEEcCCCCC
Confidence 678889887765444
No 396
>PRK07062 short chain dehydrogenase; Provisional
Probab=66.94 E-value=51 Score=26.96 Aligned_cols=84 Identities=8% Similarity=-0.088 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCCc--c-HhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAGV--D-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~--~-~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
.+..+|=.|++.|- . +..++..+. +|+.++.+++.++.+.+.........++.++.+|+.+..-.. ......
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46778888876642 1 122333455 899999998877766555443221234778899997743211 111123
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
++.|+++...+.
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 578988776543
No 397
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=66.39 E-value=40 Score=28.59 Aligned_cols=95 Identities=20% Similarity=0.146 Sum_probs=55.4
Q ss_pred cCCCCeEEEEcCC-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 29 SHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 29 ~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
..++.+||-.||| .|..+..++.....++++++.+++.++.+++. .. ...+... ....... ..+.+|
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~--~~~~~~~---~~~~~d 227 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL-GA------DEVVDSG--AELDEQA---AAGGAD 227 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CC------cEEeccC--CcchHHh---ccCCCC
Confidence 4577889999887 46555555555333899999999888776432 11 1111111 1111101 124588
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+.... . ...+..+.+.|+++|.++..
T Consensus 228 ~vi~~~~------~----~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 228 VILVTVV------S----GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEEECCC------c----HHHHHHHHHhcccCCEEEEE
Confidence 8865321 1 12456667889999998876
No 398
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=66.39 E-value=40 Score=29.48 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=31.9
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHH
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARD 72 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~ 72 (248)
+.++.+||=.|||. |..+..+++. +..+++++|.++.-++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 45788999999875 5444555554 44479999999988887754
No 399
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.32 E-value=59 Score=28.30 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=57.7
Q ss_pred HhcCCCCeEEEEcCC-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-cccCC
Q 025775 27 IYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKAN 104 (248)
Q Consensus 27 ~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~ 104 (248)
.-+.||.+|-=+|.| -|+.+.+++.+-..+|+++|-+..--+.|-+++-.. .|+.. ..+.+.-+.+ ..-++
T Consensus 177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd------~fv~~-~~d~d~~~~~~~~~dg 249 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD------VFVDS-TEDPDIMKAIMKTTDG 249 (360)
T ss_pred cCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc------eeEEe-cCCHHHHHHHHHhhcC
Confidence 334578876666654 588888888774449999999987666665543221 22222 1122221111 11233
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
-.|-|++. + +..++.+.+.||++|.+++.
T Consensus 250 ~~~~v~~~-a-----------~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 250 GIDTVSNL-A-----------EHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred cceeeeec-c-----------ccchHHHHHHhhcCCEEEEE
Confidence 44555432 2 22456677889999999887
No 400
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=66.29 E-value=25 Score=29.64 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=45.4
Q ss_pred cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
+.++....|+|...|+++-.+...+. .|+++|--+ |.+. .-..+ .++....|-..-.. .....|-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma~s----L~dtg---~v~h~r~DGfk~~P------~r~~idW 273 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MAQS----LMDTG---QVTHLREDGFKFRP------TRSNIDW 273 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccch-hhhh----hhccc---ceeeeeccCccccc------CCCCCce
Confidence 45899999999999999998888877 899999654 2211 11122 25555555543221 2455776
Q ss_pred EEecc
Q 025775 109 VCCFQ 113 (248)
Q Consensus 109 V~~~~ 113 (248)
.+|.+
T Consensus 274 mVCDm 278 (358)
T COG2933 274 MVCDM 278 (358)
T ss_pred EEeeh
Confidence 66655
No 401
>PRK08265 short chain dehydrogenase; Provisional
Probab=66.18 E-value=72 Score=26.11 Aligned_cols=76 Identities=8% Similarity=-0.073 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 32 YVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
+.++|=.|++.| .... ++..+. +|+.+|.+++.++....... .++.++++|+.+..-.. ......
T Consensus 6 ~k~vlItGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGGATL-IGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 567887776543 3333 333455 89999998776554433321 24778899998753211 111123
Q ss_pred CceeEEEeccc
Q 025775 104 NQADLVCCFQH 114 (248)
Q Consensus 104 ~~fD~V~~~~~ 114 (248)
++.|+++....
T Consensus 79 g~id~lv~~ag 89 (261)
T PRK08265 79 GRVDILVNLAC 89 (261)
T ss_pred CCCCEEEECCC
Confidence 56898877543
No 402
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=65.96 E-value=34 Score=29.84 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~fD 107 (248)
.++.+||=.|+|. |..+..+++....++++++.++.....+.+.+ + +..+. +..+. .+.. ..+.+|
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~---G----a~~vi-~~~~~~~~~~----~~~~~D 249 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL---G----ADSFL-VSTDPEKMKA----AIGTMD 249 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC---C----CcEEE-cCCCHHHHHh----hcCCCC
Confidence 4788888899875 55555555553337888888775443332221 2 11111 11111 1111 123588
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+-... . ...+++..+.|++||.++..
T Consensus 250 ~vid~~g------~----~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 250 YIIDTVS------A----VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EEEECCC------C----HHHHHHHHHHhcCCcEEEEe
Confidence 8864331 1 12456677889999998865
No 403
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=65.27 E-value=64 Score=27.36 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=55.6
Q ss_pred cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=.|. | .|..+..+++....++++++.+++-.+.+++. +. -..+..+-. ..+...... ..+.
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l----Ga---~~vi~~~~~-~~~~~~~~~~~~~g 207 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL----GF---DVAFNYKTV-KSLEETLKKASPDG 207 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC---CEEEecccc-ccHHHHHHHhCCCC
Confidence 457889988884 3 46666666665334899999888877766431 21 111211100 111111111 1346
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+-... . ..+....++|+++|.++..
T Consensus 208 vdvv~d~~G-------~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 208 YDCYFDNVG-------G----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred eEEEEECCC-------H----HHHHHHHHHhCcCcEEEEe
Confidence 898865321 1 1246677889999999865
No 404
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.70 E-value=53 Score=27.54 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=54.3
Q ss_pred eEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh-------cCC-C--------ceEEEEEcCCCCCch
Q 025775 34 TVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWEN-------QRK-N--------FIAEFFEADPCAENF 95 (248)
Q Consensus 34 ~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~-------~~~-~--------~~~~~~~~d~~~~~~ 95 (248)
+|-=||+|. +..+..++..+. +|+++|++++.++.+..+... .+. . .++.+ ..| .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~-----~ 77 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTD-----L 77 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCC-----H
Confidence 567788886 334444555565 899999999999766543322 110 0 00111 111 1
Q ss_pred hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
. .-...|+|+..- .+..+...++++++.+.++|+.++.
T Consensus 78 ~-----~~~~aDlVi~av-----~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 78 D-----DLKDADLVIEAA-----TENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred H-----HhccCCeeeecc-----cccHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 124568875422 1334445689999999999988773
No 405
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=64.64 E-value=49 Score=28.19 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=55.8
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~ 105 (248)
+.++.+||-.|+|. |..+..+++....+++++..+++..+.++... . ...+ +..+..+...+.. ....
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~------~~v~--~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-A------DDTI--NVGDEDVAARLRELTDGEG 227 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-C------CEEe--cCcccCHHHHHHHHhCCCC
Confidence 45788999998764 55555565553347889888887776664321 1 1112 1112222221111 2345
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+.... . ...+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g------~----~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG------N----PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC------C----HHHHHHHHHHHhcCCEEEEE
Confidence 899865421 1 12456677888999998865
No 406
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=64.62 E-value=49 Score=28.82 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=54.8
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=+|+|. |..+..+++. +...++++|.+++-++.+++. +. ...+...-.+.++...+.. ..+.
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga---~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GA---TDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---CEEEcccccchHHHHHHHHHhCCC
Confidence 45788999998764 4444445444 444799999999888777542 10 1122111000112211111 1236
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~ 145 (248)
+|+|+-... . ...+....+.|+++ |.++..
T Consensus 257 ~d~vid~~g------~----~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 257 VDYTFECIG------N----VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CcEEEECCC------C----hHHHHHHHHhhccCCCeEEEE
Confidence 898865321 1 12455566788887 888765
No 407
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=64.36 E-value=23 Score=31.77 Aligned_cols=87 Identities=17% Similarity=0.049 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
-.+.+|+=+|+|. |..+...++....+|+++|.++.-...|.. .+ . ...++ .+. -...|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~--~v~~l-----eea----l~~aDV 253 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----F--RVMTM-----EEA----AKIGDI 253 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----C--EeCCH-----HHH----HhcCCE
Confidence 3789999999997 544444444433489999998864433321 12 1 11221 111 134698
Q ss_pred EEeccchhhhcCCHHHHHHHHH-HHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~-~~~~~LkpgG~~i~~ 145 (248)
|++.-. + ..++. .....+|+|++++..
T Consensus 254 VItaTG------~----~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 254 FITATG------N----KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred EEECCC------C----HHHHHHHHHhcCCCCcEEEEE
Confidence 765331 1 22333 467789999999877
No 408
>PRK05867 short chain dehydrogenase; Provisional
Probab=64.24 E-value=51 Score=26.78 Aligned_cols=82 Identities=10% Similarity=-0.045 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCCc--c-HhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAGV--D-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~--~-~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
.+.++|=.|++.|- . +..++..+. +|+.++.+++.++.........+ .++.++++|+.+..-.. ...+..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46788988876542 1 223334455 89999999887776655544322 24778899987643211 111123
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
++.|+++...+.
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 578988776543
No 409
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=64.06 E-value=49 Score=28.26 Aligned_cols=94 Identities=11% Similarity=0.001 Sum_probs=53.8
Q ss_pred CeEEEEcC--CCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCceeE
Q 025775 33 VTVCDLYC--GAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQADL 108 (248)
Q Consensus 33 ~~VLDlGc--G~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~ 108 (248)
.+||=.|+ |.|..+..+++. +..++++++.+++..+.+++.+.. ..++.. .+.++.+.+.. .++.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~--~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAINY--KTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEEC--CCCCHHHHHHHHCCCCceE
Confidence 78888886 346666666655 443799999888777666543221 112211 12223222111 2346999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+.... . . .+....+.|+++|.++..
T Consensus 228 vid~~g------~-~----~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG------G-E----ISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC------c-H----HHHHHHHHhccCCEEEEE
Confidence 865331 1 1 235667789999998864
No 410
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=63.77 E-value=14 Score=27.78 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=23.3
Q ss_pred EEcCCCC--ccHhHHH--Hc-CCCeEEEEeCChHHHHHHHHH
Q 025775 37 DLYCGAG--VDVDKWE--TA-LIANYIGIDVATSGIGEARDT 73 (248)
Q Consensus 37 DlGcG~G--~~~~~l~--~~-~~~~v~giDis~~~l~~a~~~ 73 (248)
|+|+..| .....+. .. ....++++|++|..++..+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 22 345899999999998887777
No 411
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.68 E-value=81 Score=25.82 Aligned_cols=111 Identities=9% Similarity=-0.065 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCC-ccHh----HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhcc
Q 025775 31 PYVTVCDLYCGAG-VDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQE 101 (248)
Q Consensus 31 ~~~~VLDlGcG~G-~~~~----~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~ 101 (248)
.+..+|=.|+++| +... .++..+. +|+.+|.+....+...+.....+ ...++.+|+.+..-. .....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 4678888887752 3333 3344455 78888887654332222222211 145678998764311 11112
Q ss_pred cCCceeEEEeccchhhh------c--CCHHHHHHH-----------HHHHhccccCCcEEEEE
Q 025775 102 KANQADLVCCFQHLQMC------F--ETEERARRL-----------LQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~------~--~~~~~~~~~-----------l~~~~~~LkpgG~~i~~ 145 (248)
..++.|++++....... + .+.++.+.. .+.+...|+.+|.++..
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 23678988876543210 0 123333332 35566667777876654
No 412
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=63.49 E-value=68 Score=24.83 Aligned_cols=100 Identities=18% Similarity=0.058 Sum_probs=62.6
Q ss_pred cCCCCeEEEEcCCCCccHhHHHH--cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~G~~~~~l~~--~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
..++.+|+-|||=+-.. .+.. ....++.-+|++... ...+ .+ .|..-|...+.-. ...-.++|
T Consensus 23 ~~~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF--------~~~~--~~-~F~fyD~~~p~~~--~~~l~~~~ 87 (162)
T PF10237_consen 23 ALDDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRF--------EQFG--GD-EFVFYDYNEPEEL--PEELKGKF 87 (162)
T ss_pred cCCCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchH--------HhcC--Cc-ceEECCCCChhhh--hhhcCCCc
Confidence 34678999999987532 3322 234489999998643 3322 11 3666666543211 11125799
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|+|++--- |.+.+-+.+....+..++++++.++..++
T Consensus 88 d~vv~DPP----Fl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 88 DVVVIDPP----FLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred eEEEECCC----CCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 99988652 24566677777888888899888887644
No 413
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=63.49 E-value=1.1e+02 Score=27.11 Aligned_cols=33 Identities=15% Similarity=-0.032 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCC
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA 63 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis 63 (248)
.+.+||=+|||. |..+ ..++..+.++++-+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999984 5433 44556688899999987
No 414
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.14 E-value=13 Score=32.32 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=57.7
Q ss_pred CeEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh-------cCCC-----ceEEEEEcCCCCCchhhh
Q 025775 33 VTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWEN-------QRKN-----FIAEFFEADPCAENFETQ 98 (248)
Q Consensus 33 ~~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~-------~~~~-----~~~~~~~~d~~~~~~~~~ 98 (248)
.+|-=||+|+ .+++..++..+. +|+..|++++.++.+..+... .+.. .++.+. .++.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~------~~l~~- 79 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV------ATIEA- 79 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec------CCHHH-
Confidence 4688889986 233444555566 999999999988876664432 1100 000100 11211
Q ss_pred hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
.-...|+|+-. +.+..+--..++.++.+.++|+.++.
T Consensus 80 ---av~~aDlViEa-----vpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 80 ---CVADADFIQES-----APEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred ---HhcCCCEEEEC-----CcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 12456777543 34667777889999999999988443
No 415
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=62.98 E-value=14 Score=31.74 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHH
Q 025775 122 EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKY 156 (248)
Q Consensus 122 ~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~ 156 (248)
.+.++.++..+..+|+|||.+++.+..+ +.+.+++
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~ 252 (305)
T TIGR00006 216 LEELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNF 252 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHH
Confidence 3468899999999999999998875555 5555553
No 416
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=62.90 E-value=46 Score=28.79 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=56.4
Q ss_pred cCCCCeEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc-C-C
Q 025775 29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-A-N 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~ 104 (248)
+.++.+||=.|... |..+..|++.-...++++--+++-.+.+++.-...- +.+...| +.+.+.+. . .
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~v----i~y~~~~-----~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHV----INYREED-----FVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEE----EcCCccc-----HHHHHHHHcCCC
Confidence 45789999988544 566666666532277777777766664444322111 2222222 33332221 2 3
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+|+|+..-.-. .+.+..+.|+++|.++..
T Consensus 211 gvDvv~D~vG~~-----------~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 211 GVDVVLDTVGGD-----------TFAASLAALAPGGRLVSI 240 (326)
T ss_pred CceEEEECCCHH-----------HHHHHHHHhccCCEEEEE
Confidence 699997755332 345567788999998876
No 417
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.88 E-value=23 Score=29.86 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=54.3
Q ss_pred eEEEEcCCC-C-ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCCc---------eEEEEEcCCCCCch
Q 025775 34 TVCDLYCGA-G-VDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKNF---------IAEFFEADPCAENF 95 (248)
Q Consensus 34 ~VLDlGcG~-G-~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-------~~~~---------~~~~~~~d~~~~~~ 95 (248)
+|.=||+|. | ..+..++..+. +|+.+|.+++.++.+.++.... +... ++. ...| +
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~-----~ 75 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLD-----L 75 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCc-----H
Confidence 577788885 2 23334444555 8999999999998876543210 0000 011 1111 1
Q ss_pred hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+ .-...|+|+..- .+..+....++.++.+.++|+.++...
T Consensus 76 ~~----~~~~aD~Vi~av-----pe~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 76 KA----AVADADLVIEAV-----PEKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred HH----hhcCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 11 124568886432 134444567788888889888766543
No 418
>PRK09242 tropinone reductase; Provisional
Probab=62.54 E-value=71 Score=25.95 Aligned_cols=83 Identities=8% Similarity=0.017 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCC--ccH-hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAG--VDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G--~~~-~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
.+.++|=.|++.| ..+ ..++..+. +|+.++.+++.++...+.........++.++.+|+.+..-.. .....-
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678888887654 222 23333455 899999988877666555433211235788899997643211 111123
Q ss_pred CceeEEEeccc
Q 025775 104 NQADLVCCFQH 114 (248)
Q Consensus 104 ~~fD~V~~~~~ 114 (248)
++.|+|+....
T Consensus 87 g~id~li~~ag 97 (257)
T PRK09242 87 DGLHILVNNAG 97 (257)
T ss_pred CCCCEEEECCC
Confidence 57898876554
No 419
>PRK06125 short chain dehydrogenase; Provisional
Probab=61.84 E-value=68 Score=26.14 Aligned_cols=81 Identities=7% Similarity=-0.033 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCCccHh----HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 31 PYVTVCDLYCGAGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~----~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
.+.++|=.|++.| ... .++..+. +|++++.+++.++.......... ..++.++.+|+.+..-...+....++.
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 3567888887554 232 3334455 89999999887766555443221 124778899987643221111123578
Q ss_pred eEEEeccc
Q 025775 107 DLVCCFQH 114 (248)
Q Consensus 107 D~V~~~~~ 114 (248)
|+++...+
T Consensus 83 d~lv~~ag 90 (259)
T PRK06125 83 DILVNNAG 90 (259)
T ss_pred CEEEECCC
Confidence 88877543
No 420
>PRK12939 short chain dehydrogenase; Provisional
Probab=61.38 E-value=84 Score=25.20 Aligned_cols=80 Identities=11% Similarity=-0.172 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCCccHhHHH----HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh----ccc
Q 025775 31 PYVTVCDLYCGAGVDVDKWE----TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM----QEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~----~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~ 102 (248)
++.+||=.|+ +|.....++ +.+. ++++++.+++.++...+.....+ .++.++++|+.+..-...+ ...
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567786665 344444433 3355 78999988877766555443322 2478899999764321111 111
Q ss_pred CCceeEEEeccc
Q 025775 103 ANQADLVCCFQH 114 (248)
Q Consensus 103 ~~~fD~V~~~~~ 114 (248)
-++.|+|+....
T Consensus 82 ~~~id~vi~~ag 93 (250)
T PRK12939 82 LGGLDGLVNNAG 93 (250)
T ss_pred cCCCCEEEECCC
Confidence 256888876543
No 421
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=61.22 E-value=15 Score=30.27 Aligned_cols=44 Identities=14% Similarity=0.020 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHH
Q 025775 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~ 75 (248)
+..+++|+=||+|..+..+.. ....++.-|+++..+...+...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 688999999999976655543 44589999999998877764443
No 422
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=60.98 E-value=79 Score=27.02 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=56.8
Q ss_pred cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=.|+ | -|..+..+++....++++++.+++..+.+++.+... .++..+ ...++...+.. ..+.
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~-~~~~~~~~i~~~~~~g 221 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD------DAFNYK-EEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc------eeEEcC-CcccHHHHHHHhCCCC
Confidence 457889998886 2 466666666653337999998888777666532111 112111 01122211111 1246
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+-... . ..+....+.|+++|.++..
T Consensus 222 vd~v~d~~g-------~----~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYFDNVG-------G----KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEEECCC-------H----HHHHHHHHHhccCcEEEEe
Confidence 898865331 1 2456677899999998865
No 423
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=60.53 E-value=63 Score=27.50 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=51.3
Q ss_pred CeEEEEcCCC-Cc-cHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 33 VTVCDLYCGA-GV-DVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 33 ~~VLDlGcG~-G~-~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.+|.=||+|. |. .+..+...+. ..|+++|.+++.++.+++. +. ......+ ... .....|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~---~~~~~~~-----~~~----~~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL---GDRVTTS-----AAE----AVKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC---CceecCC-----HHH----HhcCCCEE
Confidence 5688899987 33 2233444443 3799999999877665431 10 0001111 111 12457888
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+..- +......+++.+...+++|++++..
T Consensus 71 iiav-------p~~~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 71 ILCV-------PVGASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred EECC-------CHHHHHHHHHHHHhhCCCCCEEEeC
Confidence 6543 2333566777788888998866543
No 424
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=60.40 E-value=39 Score=27.82 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=53.5
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
..++.+||=.|||. |..+..++.. +...+++++.+++.++.+++.-... ...... . .. . ....+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~------~~~~~~--~-~~---~--~~~~~ 160 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD------PVAADT--A-DE---I--GGRGA 160 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc------cccccc--h-hh---h--cCCCC
Confidence 34788888888865 5555555554 4433999999988877665431000 011110 0 00 0 23468
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|+.... . ...+....+.|+++|.++..
T Consensus 161 d~vl~~~~------~----~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 161 DVVIEASG------S----PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CEEEEccC------C----hHHHHHHHHHhcCCcEEEEE
Confidence 88864321 1 12456667789999999865
No 425
>PLN02494 adenosylhomocysteinase
Probab=60.16 E-value=15 Score=33.66 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.+.+|+=+|+|. |..+...+.. +. +|+.+|.++.-...|.. .+ ... .+ +.+.+ ...|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G----~~v--v~-----leEal----~~ADV 312 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EG----YQV--LT-----LEDVV----SEADI 312 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cC----Cee--cc-----HHHHH----hhCCE
Confidence 689999999997 5444444443 44 89999999865433322 11 111 12 22111 35798
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 147 (248)
|++.-.-. ..+.......||+||+++-...
T Consensus 313 VI~tTGt~---------~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 313 FVTTTGNK---------DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEECCCCc---------cchHHHHHhcCCCCCEEEEcCC
Confidence 87633211 1123567778999999988733
No 426
>PRK06197 short chain dehydrogenase; Provisional
Probab=60.05 E-value=79 Score=26.64 Aligned_cols=83 Identities=6% Similarity=-0.214 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCCccHhHH----HHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775 31 PYVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l----~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (248)
.+.+||=.|+. |+....+ +..+. +|+.++.+++..+.+.+.........++.++++|+.+..-.. .+.+.
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 46678877754 4334333 33455 888888887776655544432211234788999997743211 11112
Q ss_pred CCceeEEEeccch
Q 025775 103 ANQADLVCCFQHL 115 (248)
Q Consensus 103 ~~~fD~V~~~~~l 115 (248)
.++.|+++...+.
T Consensus 93 ~~~iD~li~nAg~ 105 (306)
T PRK06197 93 YPRIDLLINNAGV 105 (306)
T ss_pred CCCCCEEEECCcc
Confidence 3568988876644
No 427
>PRK08223 hypothetical protein; Validated
Probab=59.62 E-value=49 Score=28.21 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCC-Ccc-HhHHHHcCCCeEEEEeCChHH-------------------HHHHHHHHHhcCCCceEEEEEcC
Q 025775 31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVATSG-------------------IGEARDTWENQRKNFIAEFFEAD 89 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~-~~~l~~~~~~~v~giDis~~~-------------------l~~a~~~~~~~~~~~~~~~~~~d 89 (248)
...+||=+|||- |.. +..++..+.++++-+|-+.-- .+.|+++....+...+++.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 568899999994 544 456666788888888865332 23344445444444455555555
Q ss_pred CCCCchhhhhcccCCceeEEEe
Q 025775 90 PCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
+......+. -..+|+|+.
T Consensus 106 l~~~n~~~l----l~~~DlVvD 123 (287)
T PRK08223 106 IGKENADAF----LDGVDVYVD 123 (287)
T ss_pred cCccCHHHH----HhCCCEEEE
Confidence 554433222 246899874
No 428
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=59.42 E-value=29 Score=30.86 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=57.2
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (248)
..++.+||=.|+|. |..+..++.. +...++.+|.++.-++.|++. + +..+... .+.++...+.. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G----a~~v~~~-~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G----CETVDLS-KDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C----CeEEecC-CcccHHHHHHHHcCCC
Confidence 45778887788875 4444445444 555577788888777777653 2 2111110 11122211111 124
Q ss_pred ceeEEEeccchh---hhcCCH-HHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQ---MCFETE-ERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~---~~~~~~-~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+|+|+-..... +..+.. ......+++..+++++||.+++.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 589886533211 000000 01124677778899999999876
No 429
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=59.40 E-value=78 Score=27.14 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD 107 (248)
++.+||-.|+|. |..+..+++. +...+++++.++...+.+.+ + + +..+ .+-.+..+...+.. ..+.+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g----~~~~-~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-A---G----ADVV-VNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---C----CcEE-ecCCCccHHHHHHHHhCCCCc
Confidence 678888888753 4444444444 55578999988877766643 2 1 1111 11112122111111 123688
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+.... . ...+..+.+.|+++|.++..
T Consensus 246 ~vid~~g------~----~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 246 AVIDFVN------N----SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEEECCC------C----HHHHHHHHHHhhcCCeEEEE
Confidence 8865331 1 12466677888999998864
No 430
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=59.31 E-value=65 Score=28.02 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=53.8
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=+|+|. |..+..+++. +..+++++|.++.-++.+++. +. ..++...-...++.+.+.. ..+.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GA---TDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---CcEeccccccchHHHHHHHHhCCC
Confidence 45788999888764 4444444444 554799999998887777532 10 1111111000111111110 1246
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~ 145 (248)
+|+|+-... . ...+....+.|+++ |.++..
T Consensus 255 ~d~vid~~g------~----~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 255 VDYSFECTG------N----ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCEEEECCC------C----hHHHHHHHHhcccCCCEEEEE
Confidence 898864221 1 12456667788885 888765
No 431
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=59.20 E-value=80 Score=26.83 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=53.6
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+.++.+||=.|||. |..+..++.. ...++++++-+++..+.+++ +.. -.++... ........+....+.+
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~------~~v~~~~-~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGA------DLTINSK-RVEDVAKIIQEKTGGA 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCC------cEEeccc-ccccHHHHHHHhcCCC
Confidence 45788898888653 4444555553 23489999999988887743 211 1112111 0011111121112347
Q ss_pred eE-EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DL-VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~-V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|. +.+.. . ...+..+.+.|+++|.++..
T Consensus 232 d~vi~~~~-------~----~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 232 HAAVVTAV-------A----KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred cEEEEeCC-------C----HHHHHHHHHhccCCCEEEEE
Confidence 74 43321 1 23467778889999998865
No 432
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=59.00 E-value=31 Score=29.69 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=59.1
Q ss_pred CeEEEEcCCCC--ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--------c
Q 025775 33 VTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--------K 102 (248)
Q Consensus 33 ~~VLDlGcG~G--~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------~ 102 (248)
.+|-=||.|+- +.+..++..++ .|+..|+++++++.+.......-. -....+-+........+.. .
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~---k~~~~g~l~~~~~~~~l~~i~~~~~~~~ 79 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLE---KLVEKGKLTEEEADAALARITPTTDLAA 79 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHH---HHHhcCCCChhhHHHHHhhccccCchhH
Confidence 45777888872 23333334345 899999999999988775543200 0000011111100000000 0
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
-...|+|+ .-.+++.+--+++++++-.+++|+.+|---
T Consensus 80 l~~~DlVI-----EAv~E~levK~~vf~~l~~~~~~~aIlASN 117 (307)
T COG1250 80 LKDADLVI-----EAVVEDLELKKQVFAELEALAKPDAILASN 117 (307)
T ss_pred hccCCEEE-----EeccccHHHHHHHHHHHHhhcCCCcEEeec
Confidence 13356663 234678888899999999999999877543
No 433
>PRK05876 short chain dehydrogenase; Provisional
Probab=58.98 E-value=82 Score=26.16 Aligned_cols=81 Identities=14% Similarity=-0.008 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (248)
.+.++|=.|++.| .... ++..+. +|+.+|.++..++...+.....+ .++.++.+|+.+..-.. .....
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3567887776654 2333 333455 79999999887776555444322 34778899997743211 11112
Q ss_pred CCceeEEEeccch
Q 025775 103 ANQADLVCCFQHL 115 (248)
Q Consensus 103 ~~~fD~V~~~~~l 115 (248)
.++.|+++...+.
T Consensus 81 ~g~id~li~nAg~ 93 (275)
T PRK05876 81 LGHVDVVFSNAGI 93 (275)
T ss_pred cCCCCEEEECCCc
Confidence 3568988776543
No 434
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=58.97 E-value=90 Score=25.91 Aligned_cols=88 Identities=8% Similarity=0.086 Sum_probs=45.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhcccCCceeEEEeccch---------hhhcCCHHH
Q 025775 55 ANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADLVCCFQHL---------QMCFETEER 124 (248)
Q Consensus 55 ~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l---------~~~~~~~~~ 124 (248)
.++.-+|++++.++............. ...+...+ +..+. -...|+|++.... ..+..+.+-
T Consensus 27 ~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~----d~~~~----~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i 98 (263)
T cd00650 27 IELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD----DPYEA----FKDADVVIITAGVGRKPGMGRLDLLKRNVPI 98 (263)
T ss_pred eEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC----chHHH----hCCCCEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence 489999999877665544433221100 12222111 11111 2347888774322 112234455
Q ss_pred HHHHHHHHhccccCCcEEEEEecChhH
Q 025775 125 ARRLLQNVSSLLKPGGYFLGITPDSST 151 (248)
Q Consensus 125 ~~~~l~~~~~~LkpgG~~i~~~~~~~~ 151 (248)
..++.+.+.+.- |+|.++..+...+.
T Consensus 99 ~~~i~~~i~~~~-p~a~~i~~tNP~d~ 124 (263)
T cd00650 99 VKEIGDNIEKYS-PDAWIIVVSNPVDI 124 (263)
T ss_pred HHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 666777776655 89987776433333
No 435
>PRK08251 short chain dehydrogenase; Provisional
Probab=58.92 E-value=86 Score=25.20 Aligned_cols=81 Identities=6% Similarity=-0.126 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCCccHhHH----HHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-h---hhcccC
Q 025775 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-T---QMQEKA 103 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l----~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~---~~~~~~ 103 (248)
+.++|=.|+. |+....+ +..+. +|+.++.++..++.............++.+..+|+.+..-. . ......
T Consensus 2 ~k~vlItGas-~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGAS-SGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3467777754 4444433 33354 89999999887776655444322223588899999875321 1 111123
Q ss_pred CceeEEEeccc
Q 025775 104 NQADLVCCFQH 114 (248)
Q Consensus 104 ~~fD~V~~~~~ 114 (248)
+..|+|+...+
T Consensus 80 ~~id~vi~~ag 90 (248)
T PRK08251 80 GGLDRVIVNAG 90 (248)
T ss_pred CCCCEEEECCC
Confidence 56888877654
No 436
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=58.81 E-value=13 Score=31.99 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHH
Q 025775 122 EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (248)
Q Consensus 122 ~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~ 157 (248)
.+.++.++..+..+|+|||.+++.+..+ +.+.+++-
T Consensus 217 L~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f 254 (310)
T PF01795_consen 217 LEELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFF 254 (310)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHH
Confidence 3578999999999999999998886665 55555543
No 437
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=58.73 E-value=79 Score=25.87 Aligned_cols=82 Identities=10% Similarity=0.028 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
.+.++|=.|++.|- .+..++..+. +++.++-+++.++...+.....+ .++.++++|+.+..-.. ......
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 56778888877642 1223344455 78889998887776655554332 24788999997643211 111123
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
++.|+++...+.
T Consensus 86 ~~id~li~~ag~ 97 (265)
T PRK07097 86 GVIDILVNNAGI 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 568988776544
No 438
>PRK07890 short chain dehydrogenase; Provisional
Probab=58.57 E-value=74 Score=25.76 Aligned_cols=80 Identities=13% Similarity=-0.052 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh-h---hccc
Q 025775 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-Q---MQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~---~~~~ 102 (248)
++.+||=.|++.| .... ++..+. +|++++.++..++.........+ .++.++.+|+.+..-.. . ....
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 3567887775443 3333 334465 89999999887766555443322 24788999997643211 1 1112
Q ss_pred CCceeEEEeccc
Q 025775 103 ANQADLVCCFQH 114 (248)
Q Consensus 103 ~~~fD~V~~~~~ 114 (248)
-+..|+|+....
T Consensus 80 ~g~~d~vi~~ag 91 (258)
T PRK07890 80 FGRVDALVNNAF 91 (258)
T ss_pred cCCccEEEECCc
Confidence 356898877654
No 439
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=58.26 E-value=12 Score=36.40 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=61.3
Q ss_pred CeEEEEcCCC-C-ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCC---------ceEEEEEcCCCCCc
Q 025775 33 VTVCDLYCGA-G-VDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAEN 94 (248)
Q Consensus 33 ~~VLDlGcG~-G-~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-------~~~---------~~~~~~~~d~~~~~ 94 (248)
.+|-=||+|+ | +.+..++..+. .|+..|++++.++.+.++.... +.. .++.+. .|
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~----- 408 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LD----- 408 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CC-----
Confidence 4688999997 2 33344445566 8999999999999887765431 100 001110 11
Q ss_pred hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+. .-...|+| +.-++++.+--.+++.++-++++|+.+|.-.
T Consensus 409 ~~-----~~~~aDlV-----iEAv~E~l~~K~~vf~~l~~~~~~~~ilasN 449 (737)
T TIGR02441 409 YS-----GFKNADMV-----IEAVFEDLSLKHKVIKEVEAVVPPHCIIASN 449 (737)
T ss_pred HH-----HhccCCee-----hhhccccHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 10 11345666 3335678888899999999999999877543
No 440
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.97 E-value=75 Score=26.76 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=53.5
Q ss_pred CeEEEEcCCCCc--cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCC----------ceEEEEEcCCCCC
Q 025775 33 VTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN----------FIAEFFEADPCAE 93 (248)
Q Consensus 33 ~~VLDlGcG~G~--~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-------~~~----------~~~~~~~~d~~~~ 93 (248)
.+|.=||+|.-+ .+..++..+. +|+.+|.+++.++.+.++.... ... .++. ...|
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d---- 77 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTD---- 77 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCC----
Confidence 357778998622 2233334455 8999999999998887653211 000 0011 1111
Q ss_pred chhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEE
Q 025775 94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (248)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~ 142 (248)
+.+ .-...|+|+..- .+..+....+++++...++++.++
T Consensus 78 -~~~----a~~~aDlVieav-----pe~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 78 -LAE----AVKDADLVIEAV-----PEDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred -HHH----HhcCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCCEE
Confidence 211 124568876533 134555778888898888777655
No 441
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=57.73 E-value=20 Score=30.71 Aligned_cols=34 Identities=35% Similarity=0.430 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHH
Q 025775 122 EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAK 155 (248)
Q Consensus 122 ~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~ 155 (248)
.+.++.++..+..+|+|||.+++.+..+ +.+.++
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~ 247 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISFHSLEDRIVKR 247 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 3468899999999999999988875554 555555
No 442
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=57.31 E-value=25 Score=31.05 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhcccCCcee
Q 025775 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQAD 107 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~fD 107 (248)
++.+|+=+|+|. |..+...+.. +. +|+.+|.++..++.+...+.. .+ ..+..+ ..+.+. -..+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~-----~v---~~~~~~~~~l~~~----l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG-----RI---HTRYSNAYEIEDA----VKRAD 232 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc-----ee---EeccCCHHHHHHH----HccCC
Confidence 456799999985 4444444433 55 799999998776655433211 01 111111 112211 24689
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|++...... .....-+-++..+.++||++++-.
T Consensus 233 vVI~a~~~~g----~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 233 LLIGAVLIPG----AKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred EEEEccccCC----CCCCcCcCHHHHhcCCCCCEEEEE
Confidence 9986432111 000111123444667999887755
No 443
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=57.00 E-value=98 Score=26.89 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=54.9
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
+.++.+||=.|+|. |..+..+++. +...++++|.++...+.++.. +. ..++.. ....+.+.+.. ....
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~---~~~i~~--~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GA---THVINP--KEEDLVAAIREITGGG 254 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---cEEecC--CCcCHHHHHHHHhCCC
Confidence 34688888888754 4444444444 555799999998877665432 10 112221 11222211110 1346
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+.... . ...+..+.+.|+++|.++..
T Consensus 255 ~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 255 VDYALDTTG------V----PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CcEEEECCC------C----cHHHHHHHHHhccCCEEEEe
Confidence 898864321 1 12456677888999998865
No 444
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=56.83 E-value=1.1e+02 Score=25.18 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCChH
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVATS 65 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis~~ 65 (248)
.+.+|+=+|||. |..+ ..++..+.++++-+|.+.-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 357899999994 5444 4445558888888886543
No 445
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.66 E-value=50 Score=26.56 Aligned_cols=81 Identities=12% Similarity=-0.053 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCC--ccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAG--VDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G--~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
++.++|=.|++.| ..+. .++..+. +++.+|.++..++.+.+.....+ .++.++++|+.+..-.. ......
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3667888886443 2222 2233354 79999999877766655544322 24778899987643211 111112
Q ss_pred CceeEEEeccc
Q 025775 104 NQADLVCCFQH 114 (248)
Q Consensus 104 ~~fD~V~~~~~ 114 (248)
++.|.|+...+
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 56898887654
No 446
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=56.60 E-value=90 Score=26.31 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=56.0
Q ss_pred cCCCCeEEEEcC--CCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 105 (248)
..++.+||=.|. |.|..+..++.....++++++.+++-.+.+++ + +. ..++. ....++.+.+.. ..+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~---Ga---~~vi~--~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-L---GF---DAVFN--YKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c---CC---CEEEe--CCCccHHHHHHHHCCCC
Confidence 457888988874 34666666666533379999988887776654 2 21 11221 122222221111 1346
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+.... . ..+....+.|+++|.++..
T Consensus 212 vd~vld~~g-------~----~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-------G----EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-------H----HHHHHHHHhhccCCEEEEE
Confidence 898864321 1 2356777889999998764
No 447
>PRK06940 short chain dehydrogenase; Provisional
Probab=56.07 E-value=65 Score=26.75 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=36.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh-hhc--ccCCceeEEEeccch
Q 025775 55 ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-QMQ--EKANQADLVCCFQHL 115 (248)
Q Consensus 55 ~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~--~~~~~fD~V~~~~~l 115 (248)
.+|+.+|.++..++...+.....+ .++.++++|+.+..-.. .+. ...+..|+++...+.
T Consensus 25 ~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~ 86 (275)
T PRK06940 25 KKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGV 86 (275)
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 489999998877766555443322 34778899997743211 111 113578988876654
No 448
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=56.06 E-value=42 Score=28.70 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=53.8
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhhhcccCCc
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQEKANQ 105 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~ 105 (248)
..++.+||-.|+|. |..+..+++. +...+++++-++...+.++.. +. ..++...-. ...+.... ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~---~~~~~~~~~~~~~~~~~~--~~~~ 227 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GA---DDTINPKEEDVEKVRELT--EGRG 227 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC---CEEecCccccHHHHHHHh--CCCC
Confidence 44788899998765 5555555554 443499998888776655321 11 111211110 11111111 2235
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+|+... .. ...+..+.+.|+++|.++..
T Consensus 228 ~d~vld~~------g~----~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 228 ADLVIEAA------GS----PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCEEEECC------CC----HHHHHHHHHHhhcCCEEEEE
Confidence 89886432 11 22456677888999998866
No 449
>PRK07035 short chain dehydrogenase; Provisional
Probab=55.64 E-value=1e+02 Score=24.87 Aligned_cols=81 Identities=10% Similarity=-0.027 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCCc--cH-hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAGV--DV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~--~~-~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
++.+||=.|++.|- .+ ..++..+. +|+.++.++..++...+.....+ .++.++++|+.+..-.. .....-
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45678888877652 11 22333455 89999998877766655544332 24678889987643211 111123
Q ss_pred CceeEEEeccc
Q 025775 104 NQADLVCCFQH 114 (248)
Q Consensus 104 ~~fD~V~~~~~ 114 (248)
++.|+++...+
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 46898876554
No 450
>PRK06172 short chain dehydrogenase; Provisional
Probab=55.56 E-value=95 Score=25.09 Aligned_cols=80 Identities=13% Similarity=-0.067 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch-hh---hhccc
Q 025775 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~ 102 (248)
++.+||=.|++.| .... ++..+. +|+.++-++..++...+.....+ .++.++.+|+.+..- .. .....
T Consensus 6 ~~k~ilItGas~~-iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567888886543 2333 333454 89999999877665555443322 247888999976431 11 11112
Q ss_pred CCceeEEEeccc
Q 025775 103 ANQADLVCCFQH 114 (248)
Q Consensus 103 ~~~fD~V~~~~~ 114 (248)
.++.|+|+...+
T Consensus 82 ~g~id~li~~ag 93 (253)
T PRK06172 82 YGRLDYAFNNAG 93 (253)
T ss_pred hCCCCEEEECCC
Confidence 356898887654
No 451
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=55.40 E-value=54 Score=24.48 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=47.0
Q ss_pred eEEEEcCCCCccHh----HHHHcCCCeEEEEeCC--hHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhcccC
Q 025775 34 TVCDLYCGAGVDVD----KWETALIANYIGIDVA--TSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA 103 (248)
Q Consensus 34 ~VLDlGcG~G~~~~----~l~~~~~~~v~giDis--~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~ 103 (248)
+||=.|++.| ... .++..+...++.+.-+ ....+.....+...+ .++.++++|+.+..-. +.+....
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 4566676654 233 3334445588888888 555555555554333 4689999998764321 1122245
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
++.|++++....
T Consensus 79 ~~ld~li~~ag~ 90 (167)
T PF00106_consen 79 GPLDILINNAGI 90 (167)
T ss_dssp SSESEEEEECSC
T ss_pred cccccccccccc
Confidence 789998876544
No 452
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.39 E-value=26 Score=30.41 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCccHhHH-H-HcCCCeEEEEeCChHHHHHHHHH
Q 025775 30 HPYVTVCDLYCGAGVDVDKW-E-TALIANYIGIDVATSGIGEARDT 73 (248)
Q Consensus 30 ~~~~~VLDlGcG~G~~~~~l-~-~~~~~~v~giDis~~~l~~a~~~ 73 (248)
.||.+|.=+|+|.=+++... + ..+.++++|+|++++-.+.|++.
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 37788888888764433322 1 23778999999999988888764
No 453
>PRK07024 short chain dehydrogenase; Provisional
Probab=55.10 E-value=77 Score=25.80 Aligned_cols=78 Identities=9% Similarity=-0.014 Sum_probs=45.5
Q ss_pred CeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccCC
Q 025775 33 VTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~ 104 (248)
.+||=.|++.| .... +++.+. +|+.+|.+++.++...+..... .++.++.+|+.+..-.. ......+
T Consensus 3 ~~vlItGas~g-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITGASSG-IGQALAREYARQGA-TLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEcCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 46676776443 3333 333455 8999999887776554443221 15888999998743211 1111235
Q ss_pred ceeEEEeccch
Q 025775 105 QADLVCCFQHL 115 (248)
Q Consensus 105 ~fD~V~~~~~l 115 (248)
..|+++...+.
T Consensus 78 ~id~lv~~ag~ 88 (257)
T PRK07024 78 LPDVVIANAGI 88 (257)
T ss_pred CCCEEEECCCc
Confidence 68988876543
No 454
>PRK07677 short chain dehydrogenase; Provisional
Probab=54.98 E-value=82 Score=25.51 Aligned_cols=78 Identities=13% Similarity=-0.014 Sum_probs=45.1
Q ss_pred CeEEEEcCCCC--ccH-hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcccCCc
Q 025775 33 VTVCDLYCGAG--VDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQ 105 (248)
Q Consensus 33 ~~VLDlGcG~G--~~~-~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~ 105 (248)
.++|=.|++.| ..+ ..++..+. +|++++.++..++...+.....+ .++.++.+|+.+..-... .....++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46777777554 212 22333455 89999998877766555443322 247889999976432111 1112256
Q ss_pred eeEEEecc
Q 025775 106 ADLVCCFQ 113 (248)
Q Consensus 106 fD~V~~~~ 113 (248)
.|+++...
T Consensus 79 id~lI~~a 86 (252)
T PRK07677 79 IDALINNA 86 (252)
T ss_pred ccEEEECC
Confidence 89887654
No 455
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=54.96 E-value=1.3e+02 Score=25.47 Aligned_cols=105 Identities=20% Similarity=0.163 Sum_probs=65.0
Q ss_pred CeEEEEcCCC-C-ccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775 33 VTVCDLYCGA-G-VDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (248)
Q Consensus 33 ~~VLDlGcG~-G-~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V 109 (248)
.+|+=+|.|- | .++..+...+. ..++|.|.+...++.+... + +.+-..+. ... ......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----g----v~d~~~~~---~~~----~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----G----VIDELTVA---GLA----EAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----C----cccccccc---hhh----hhcccCCEE
Confidence 4677788885 3 33344444444 3578999888877766532 1 11111110 000 023567988
Q ss_pred EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHh
Q 025775 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (248)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~ 159 (248)
+.. .+......+++++...|++|..+.=...-...+.+.+.+.
T Consensus 69 iva-------vPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~ 111 (279)
T COG0287 69 IVA-------VPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKY 111 (279)
T ss_pred EEe-------ccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHh
Confidence 653 3566688999999999999998877666667777766653
No 456
>PRK06194 hypothetical protein; Provisional
Probab=54.80 E-value=98 Score=25.59 Aligned_cols=80 Identities=9% Similarity=-0.145 Sum_probs=46.6
Q ss_pred CCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-hh---hcccC
Q 025775 32 YVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQ---MQEKA 103 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~~ 103 (248)
+.+||=.|.+ |..... ++..+. +|+.+|.++..++.........+ .++.++.+|+.+..-. .. .....
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4677866654 333333 334455 89999998877766555443322 2477899999764321 11 11123
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
+..|+|+...+.
T Consensus 82 g~id~vi~~Ag~ 93 (287)
T PRK06194 82 GAVHLLFNNAGV 93 (287)
T ss_pred CCCCEEEECCCC
Confidence 468988876654
No 457
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=54.77 E-value=67 Score=27.05 Aligned_cols=90 Identities=18% Similarity=0.060 Sum_probs=52.2
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+.++.+||=.|+|. |..+..+++. +. .+++++.+++..+.+++ + + +.. ..+.... . ....+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~-~---g----~~~-~~~~~~~-~------~~~~~ 215 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR-L---G----VET-VLPDEAE-S------EGGGF 215 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH-c---C----CcE-EeCcccc-c------cCCCC
Confidence 34778888887653 3333344443 44 69999999888877765 2 1 111 1111110 1 24568
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|+.... . ...+....+.|+++|.++..
T Consensus 216 d~vid~~g------~----~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 216 DVVVEATG------S----PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CEEEECCC------C----hHHHHHHHHHhhcCCEEEEE
Confidence 98865321 1 22455667788999999863
No 458
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=54.61 E-value=1.1e+02 Score=24.79 Aligned_cols=80 Identities=10% Similarity=-0.077 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (248)
++.+||=.|++.| .... ++..+. +|+.++.+++.++...+.....+ .++.++.+|+.+..-.. .....
T Consensus 10 ~~k~ilItGas~~-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARG-LGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 5778888886543 3333 333455 89999999877766555444322 24778999997643211 11112
Q ss_pred CCceeEEEeccc
Q 025775 103 ANQADLVCCFQH 114 (248)
Q Consensus 103 ~~~fD~V~~~~~ 114 (248)
.++.|.++...+
T Consensus 86 ~~~id~vi~~ag 97 (256)
T PRK06124 86 HGRLDILVNNVG 97 (256)
T ss_pred cCCCCEEEECCC
Confidence 356788876554
No 459
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=54.54 E-value=1.2e+02 Score=26.44 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=60.3
Q ss_pred cchhhhhHhHHH---HHHHHHhcCC--CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEE
Q 025775 10 ELTHHRLYEFAK---TALIKIYSHP--YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE 84 (248)
Q Consensus 10 ~~~~~~~~~~~~---~~li~~~~~~--~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~ 84 (248)
..+...+..|+. +.+++..... +..||=++||++.....+...+. .++++|-..+ +..+++.+... .
T Consensus 212 ~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~~~~-~~is~d~~~d-l~~~k~~~g~~------~ 283 (346)
T PRK00115 212 ALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGELLEAMAETGA-DVVGLDWTVD-LAEARRRVGDK------K 283 (346)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHhcCC-CEEeeCCCCC-HHHHHHHcCCC------e
Confidence 344455666765 3444443333 56789888888877777666566 7888887643 55666655431 2
Q ss_pred EEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+++++.. . .+ ..+.+...+...++.+.+.++|+++..
T Consensus 284 ~i~Gni~p----------------~----ll---~gt~e~i~~~~~~~i~~~~~~gfIl~~ 321 (346)
T PRK00115 284 ALQGNLDP----------------A----VL---LAPPEAIEEEVRAILDGGGGPGHIFNL 321 (346)
T ss_pred EEEeCCCh----------------h----Hh---cCCHHHHHHHHHHHHHHhCCCCeeeec
Confidence 45665511 0 11 134555666666666655666755543
No 460
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=54.37 E-value=1.1e+02 Score=25.69 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=55.3
Q ss_pred CeEEEEcCCC-C-ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh-------cCCCc--------eEEEEEcCCCCCch
Q 025775 33 VTVCDLYCGA-G-VDVDKWETALIANYIGIDVATSGIGEARDTWEN-------QRKNF--------IAEFFEADPCAENF 95 (248)
Q Consensus 33 ~~VLDlGcG~-G-~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~-------~~~~~--------~~~~~~~d~~~~~~ 95 (248)
.+|-=||+|. | ..+..++..+. +|++.|.+++.++.++++... .+... ...-...+ .
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~ 78 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN-----L 78 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC-----H
Confidence 4577789986 3 33344444455 899999999998876654321 11000 00001111 1
Q ss_pred hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
. .-...|+|+..- .+..+....+++++...++|+.+++
T Consensus 79 ~-----~~~~aD~Vieav-----~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 79 E-----ELRDADFIIEAI-----VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred H-----HhCCCCEEEEcC-----ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 123468875532 2456667788889999889988665
No 461
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.23 E-value=1.3e+02 Score=25.30 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=54.2
Q ss_pred CeEEEEcCCCCc--cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCC---------ceEEEEEcCCCCCc
Q 025775 33 VTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAEN 94 (248)
Q Consensus 33 ~~VLDlGcG~G~--~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-------~~~---------~~~~~~~~d~~~~~ 94 (248)
.+|.=||+|.-+ .+..++..+. +|+..|.+++.++.+.++.... +.. .++.. ..|
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~----- 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATD----- 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCC-----
Confidence 467778998622 2334444455 8999999999988765433211 100 00111 111
Q ss_pred hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (248)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i 143 (248)
+. .-...|+|+..- .+..+....+++.+...++|+.+++
T Consensus 78 ~~-----~~~~aD~Vieav-----pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 78 LE-----DLADCDLVIEAA-----TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred HH-----HhcCCCEEEEcC-----cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 11 123568875532 2334456678888999999988776
No 462
>PLN02780 ketoreductase/ oxidoreductase
Probab=54.17 E-value=72 Score=27.37 Aligned_cols=60 Identities=7% Similarity=-0.080 Sum_probs=38.7
Q ss_pred CCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 025775 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA 92 (248)
Q Consensus 32 ~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (248)
+..+|=.|++.|- .+..+++.+. +|+.++.+++.++...+.........++..+.+|+.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 5778888876652 2233444465 8999999999887766655432112346777888864
No 463
>PRK07576 short chain dehydrogenase; Provisional
Probab=53.87 E-value=1.2e+02 Score=24.80 Aligned_cols=79 Identities=9% Similarity=-0.141 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh-hh---ccc
Q 025775 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-QM---QEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~---~~~ 102 (248)
++.++|=.|. +|+.... ++..+. .|+++|.+++.++...+.....+ .++.++.+|+.+..-.. .+ ...
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567887775 3333333 333354 79999998877665544433222 23678899997643211 11 112
Q ss_pred CCceeEEEecc
Q 025775 103 ANQADLVCCFQ 113 (248)
Q Consensus 103 ~~~fD~V~~~~ 113 (248)
.++.|++++..
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 35689887654
No 464
>PRK09072 short chain dehydrogenase; Provisional
Probab=53.85 E-value=1.2e+02 Score=24.69 Aligned_cols=80 Identities=8% Similarity=-0.049 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCC--cc-HhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAG--VD-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G--~~-~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
++.+||=.|++.| .. +..++..+. +|++++.++..++........ ..++.++.+|+.+..-.. ... ..
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~-~~ 78 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAR-EM 78 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHH-hc
Confidence 3567888886653 21 223344455 899999998877665544321 124788999997743211 111 12
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
+..|.++...+.
T Consensus 79 ~~id~lv~~ag~ 90 (263)
T PRK09072 79 GGINVLINNAGV 90 (263)
T ss_pred CCCCEEEECCCC
Confidence 567988776543
No 465
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=53.84 E-value=1.1e+02 Score=26.31 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=54.7
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~ 104 (248)
..++.+||=.|+|. |..+..++.. +...+++++.+++..+.+++. + +..+ .|..+.++...+.. ..+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----g----a~~~-i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----G----ATIV-LDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----CCEE-ECCCccCHHHHHHHHhCCC
Confidence 34778888888653 3333444444 444799999988887766432 1 1111 12222222222111 223
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
.+|+|+-... . ...+..+.+.|+++|.++..
T Consensus 241 ~~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 241 GVDVSFDCAG------V----QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCEEEECCC------C----HHHHHHHHHhccCCCEEEEE
Confidence 5899865331 1 12456677789999998765
No 466
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=53.74 E-value=15 Score=35.63 Aligned_cols=98 Identities=9% Similarity=0.021 Sum_probs=60.3
Q ss_pred CeEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCCce------EEEEEcCCCCCchhh
Q 025775 33 VTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKNFI------AEFFEADPCAENFET 97 (248)
Q Consensus 33 ~~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-------~~~~~------~~~~~~d~~~~~~~~ 97 (248)
.+|-=||+|+ ++.+..++..+. .|+..|.+++.++.+.++.... +.... ..-+... .++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~~- 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT---LSYA- 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe---CCHH-
Confidence 3688899997 233344455566 8999999999999877654321 10000 0000000 0010
Q ss_pred hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (248)
Q Consensus 98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 144 (248)
.-...|+|+= -+++..+--.+++.++-++++|+.+|.-
T Consensus 389 ----~~~~aDlViE-----av~E~l~~K~~vf~~l~~~~~~~~ilas 426 (714)
T TIGR02437 389 ----GFDNVDIVVE-----AVVENPKVKAAVLAEVEQHVREDAILAS 426 (714)
T ss_pred ----HhcCCCEEEE-----cCcccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1234677643 2457888889999999999999977654
No 467
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.66 E-value=1.5e+02 Score=25.72 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=25.2
Q ss_pred eechHHHHHHHHHcCcEEEEecCchHHHh
Q 025775 217 LVHFPSLIRLAREAGLEYVEIQNLNEFYD 245 (248)
Q Consensus 217 lv~~~~l~~~~~~~G~~~v~~~~f~~~~~ 245 (248)
.-+.+..+.-+.++|++.+..-++.++|+
T Consensus 255 y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n 283 (335)
T KOG2918|consen 255 YNSIESQRSRFLKAGWEYVIAVDMNEIYN 283 (335)
T ss_pred cccHHHHHHHHHhcCCceeehhhHHHHHH
Confidence 45778888889999999999999999887
No 468
>PRK07478 short chain dehydrogenase; Provisional
Probab=53.56 E-value=1.1e+02 Score=24.64 Aligned_cols=81 Identities=7% Similarity=-0.085 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCC--cc-HhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccCC
Q 025775 32 YVTVCDLYCGAG--VD-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (248)
Q Consensus 32 ~~~VLDlGcG~G--~~-~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~ 104 (248)
+.++|=.|++.| .. +..++..+. +|+.++-++..++...+.....+ .++.++.+|+.+..-.. .+...-+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 467777776554 21 223334455 89999998887776665554332 24778899997643211 1111235
Q ss_pred ceeEEEeccch
Q 025775 105 QADLVCCFQHL 115 (248)
Q Consensus 105 ~fD~V~~~~~l 115 (248)
+.|+++...+.
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 78988776543
No 469
>PRK07411 hypothetical protein; Validated
Probab=53.44 E-value=1.4e+02 Score=26.53 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcC
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis~~~l-------------------~~a~~~~~~~~~~~~~~~~~~d 89 (248)
...+||=+|||. |..+ ..++..++++++-+|.+.--+ +.|+++....+...++..+...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 468899999994 4433 445556888888888553221 2344444444444456666655
Q ss_pred CCCCchhhhhcccCCceeEEEecc
Q 025775 90 PCAENFETQMQEKANQADLVCCFQ 113 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (248)
+......+. -..+|+|+...
T Consensus 117 ~~~~~~~~~----~~~~D~Vvd~~ 136 (390)
T PRK07411 117 LSSENALDI----LAPYDVVVDGT 136 (390)
T ss_pred cCHHhHHHH----HhCCCEEEECC
Confidence 544322211 24699987643
No 470
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=53.10 E-value=1.5e+02 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCC
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA 63 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis 63 (248)
...+||=+|||. |..+ ..++..+.++++-+|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 468899999995 4444 34455588889988866
No 471
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=53.03 E-value=1.3e+02 Score=26.03 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=59.7
Q ss_pred chhhhhHhHHH---HHHHHHhcCC-CCeEEEEcCCCC-ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEE
Q 025775 11 LTHHRLYEFAK---TALIKIYSHP-YVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEF 85 (248)
Q Consensus 11 ~~~~~~~~~~~---~~li~~~~~~-~~~VLDlGcG~G-~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~ 85 (248)
.+...+.+|+. +.+++.+... +..+.=-.||.. ..+..+...+. .++.+|....-+..+++.+... ..
T Consensus 187 LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~-dvl~~d~~~~dl~eak~~~g~k------~~ 259 (321)
T cd03309 187 ISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGV-DSWNVVMTANNTAELRRLLGDK------VV 259 (321)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCC-CEEEecCCCCCHHHHHHHhCCC------eE
Confidence 34445666665 3444444333 333555678876 44555555566 7888897764566676665432 14
Q ss_pred EEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC-CcEEEEE
Q 025775 86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI 145 (248)
Q Consensus 86 ~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~~i~~ 145 (248)
+++++.. . .+.. -.+.+...+.+.++.+.+.+ ||+++.+
T Consensus 260 l~GNlDp----------------~----~L~~-~~t~E~i~~~v~~~l~~~g~~~~fIf~~ 299 (321)
T cd03309 260 LAGAIDD----------------V----ALDT-ATWPEEDARGVAKAAAECAPIHPFISAP 299 (321)
T ss_pred EEcCCCh----------------H----HhcC-CCCHHHHHHHHHHHHHHhCCCCCEEeCc
Confidence 5565411 1 0100 01246677778888888888 5555544
No 472
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=52.59 E-value=94 Score=25.31 Aligned_cols=77 Identities=9% Similarity=-0.070 Sum_probs=46.0
Q ss_pred eEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccCCce
Q 025775 34 TVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQA 106 (248)
Q Consensus 34 ~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~f 106 (248)
+||=.|++.|- .+..++..+. +|+.++.++..++.+.+.....+ ++.++++|+.+..-.. ......++.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 46667765542 1233344465 89999999888777665554322 3778899997643211 111123578
Q ss_pred eEEEeccc
Q 025775 107 DLVCCFQH 114 (248)
Q Consensus 107 D~V~~~~~ 114 (248)
|+++...+
T Consensus 78 d~li~naG 85 (259)
T PRK08340 78 DALVWNAG 85 (259)
T ss_pred CEEEECCC
Confidence 98877654
No 473
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=52.48 E-value=1.4e+02 Score=28.13 Aligned_cols=85 Identities=12% Similarity=-0.023 Sum_probs=57.8
Q ss_pred CCeEEEEcCCCCccHhHHH----HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 32 YVTVCDLYCGAGVDVDKWE----TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l~----~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
+.+||==| |+|.....+. ..++++++-+|.++..+..-...+...-...+..++-+|+.+.+...... ...+.|
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~-~~~kvd 327 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAM-EGHKVD 327 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHH-hcCCCc
Confidence 67777665 6666665554 34788999999999999887776665322346889999998754322111 245689
Q ss_pred EEEeccchhhh
Q 025775 108 LVCCFQHLQMC 118 (248)
Q Consensus 108 ~V~~~~~l~~~ 118 (248)
+|+-..++-|+
T Consensus 328 ~VfHAAA~KHV 338 (588)
T COG1086 328 IVFHAAALKHV 338 (588)
T ss_pred eEEEhhhhccC
Confidence 99877666553
No 474
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=52.42 E-value=99 Score=26.83 Aligned_cols=95 Identities=20% Similarity=0.078 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~ 108 (248)
.++.+||=.|+|. |..+..+++.....+++++.+++..+.+.+.+ + +.....+.....+. .....+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~---G----a~~~i~~~~~~~~~----~~~~~~D~ 247 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHL---G----ADDYLVSSDAAEMQ----EAADSLDY 247 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhc---C----CcEEecCCChHHHH----HhcCCCcE
Confidence 4688888887764 44444555543336888888876655544332 2 11111111111111 11235788
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+-... . ...+..+.+.|+++|.++..
T Consensus 248 vid~~g------~----~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 248 IIDTVP------V----FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEECCC------c----hHHHHHHHHHhccCCEEEEE
Confidence 864321 1 12455566789999998865
No 475
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=52.28 E-value=21 Score=32.60 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCC-CccHhHH-HHcCCCeEEEEeCChHHHHH-------------------HHHHHHhcCCCceEEEEEcC
Q 025775 31 PYVTVCDLYCGA-GVDVDKW-ETALIANYIGIDVATSGIGE-------------------ARDTWENQRKNFIAEFFEAD 89 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~~~l-~~~~~~~v~giDis~~~l~~-------------------a~~~~~~~~~~~~~~~~~~d 89 (248)
.+.+||=+|||. |.-+.+. +..++.++.-+|++.--+.- |.+....-+...++...+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 578999999985 5444433 34477777777765433221 11111222223457788999
Q ss_pred CCCCchhhhhcccCCceeEEEe
Q 025775 90 PCAENFETQMQEKANQADLVCC 111 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~ 111 (248)
+.+..+...+ -++||+|..
T Consensus 91 I~e~~fnv~f---f~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEF---FRQFDIVLN 109 (603)
T ss_pred ccCcchHHHH---HHHHHHHHH
Confidence 8776543222 356888844
No 476
>PRK05866 short chain dehydrogenase; Provisional
Probab=52.15 E-value=1.2e+02 Score=25.49 Aligned_cols=79 Identities=6% Similarity=-0.090 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCCccHhHH----HHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcccC
Q 025775 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA 103 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l----~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~ 103 (248)
+.+||=.|++.| ....+ +..+. +|+.++.+++.++...+.....+ .++.++.+|+.+..-... +...-
T Consensus 40 ~k~vlItGasgg-IG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 40 GKRILLTGASSG-IGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467888886544 33333 33354 89999999887776655543322 247788999977432111 11123
Q ss_pred CceeEEEeccc
Q 025775 104 NQADLVCCFQH 114 (248)
Q Consensus 104 ~~fD~V~~~~~ 114 (248)
+..|+++...+
T Consensus 116 g~id~li~~AG 126 (293)
T PRK05866 116 GGVDILINNAG 126 (293)
T ss_pred CCCCEEEECCC
Confidence 57898877654
No 477
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=52.05 E-value=67 Score=26.69 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=52.4
Q ss_pred hHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHH
Q 025775 47 DKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125 (248)
Q Consensus 47 ~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~ 125 (248)
..+...+ ..+|+|.|.++..++.|.+. +. +.-...+ . + .-..+|+|+.. .+....
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~---~~~~~~~-----~-~----~~~~~Dlvvla-------vP~~~~ 58 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALEL----GI---IDEASTD-----I-E----AVEDADLVVLA-------VPVSAI 58 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHHT----TS---SSEEESH-----H-H----HGGCCSEEEE--------S-HHHH
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHHC----CC---eeeccCC-----H-h----HhcCCCEEEEc-------CCHHHH
Confidence 3444444 34999999999998887643 11 0011110 0 0 12346988643 356778
Q ss_pred HHHHHHHhccccCCcEEEEEecChhHHHHHHHHh
Q 025775 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (248)
Q Consensus 126 ~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~ 159 (248)
..+++++...+++|+++.=+..-...+.+.+.+.
T Consensus 59 ~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~ 92 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERL 92 (258)
T ss_dssp HHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHh
Confidence 9999999999999988776666666666666553
No 478
>PRK06484 short chain dehydrogenase; Validated
Probab=51.94 E-value=1.8e+02 Score=26.62 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=59.1
Q ss_pred CCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccCC
Q 025775 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (248)
Q Consensus 32 ~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~ 104 (248)
+..+|=.|++.|- .+..++..+. +|+.++.+++.++...+... .++..+.+|+.+..-.. .....-+
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4566767765541 1233344455 89999998877766554332 13567889997743211 1111236
Q ss_pred ceeEEEeccchhhh---c--CCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775 105 QADLVCCFQHLQMC---F--ETEERAR-----------RLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 105 ~fD~V~~~~~l~~~---~--~~~~~~~-----------~~l~~~~~~LkpgG~~i~~ 145 (248)
+.|+++...+.... + .+.++.+ .+.+.+...|+.+|.++..
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~i 399 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNL 399 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEE
Confidence 78988775543210 0 1222222 2344555666777887766
No 479
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=51.46 E-value=13 Score=29.61 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhccccCCcEEEEEecCh
Q 025775 123 ERARRLLQNVSSLLKPGGYFLGITPDS 149 (248)
Q Consensus 123 ~~~~~~l~~~~~~LkpgG~~i~~~~~~ 149 (248)
+.+...+.++.++|+|||.+++.+.+.
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecch
Confidence 347889999999999999998886555
No 480
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=51.34 E-value=1.3e+02 Score=24.37 Aligned_cols=80 Identities=14% Similarity=-0.085 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCCccHhHHH----HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775 31 PYVTVCDLYCGAGVDVDKWE----TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~----~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (248)
++.++|=.|+ +|.....++ ..+. +|+.++-++..++...+.....+ .++.++.+|+.+..-.. .+...
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888885 444444333 3355 89999998887766655544322 24778999998743221 11112
Q ss_pred CCceeEEEeccc
Q 025775 103 ANQADLVCCFQH 114 (248)
Q Consensus 103 ~~~fD~V~~~~~ 114 (248)
.++.|.|+...+
T Consensus 87 ~~~id~vi~~ag 98 (259)
T PRK08213 87 FGHVDILVNNAG 98 (259)
T ss_pred hCCCCEEEECCC
Confidence 356898877654
No 481
>PRK08589 short chain dehydrogenase; Validated
Probab=51.32 E-value=1.2e+02 Score=25.05 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCCc--c-HhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhcccC
Q 025775 31 PYVTVCDLYCGAGV--D-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~--~-~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~ 103 (248)
++.++|=.|++.|- . +..++..+. +|++++.+ ..++...+.....+ .++..+.+|+.+..-. ....+..
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 35678877876542 1 223344455 89999988 55554444443222 2477889999764321 1111123
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
+..|+++.....
T Consensus 81 g~id~li~~Ag~ 92 (272)
T PRK08589 81 GRVDVLFNNAGV 92 (272)
T ss_pred CCcCEEEECCCC
Confidence 568988776543
No 482
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=51.13 E-value=1.7e+02 Score=26.28 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCccH--hHHHHcCCCeEEEEeCChHHHHH
Q 025775 33 VTVCDLYCGAGVDV--DKWETALIANYIGIDVATSGIGE 69 (248)
Q Consensus 33 ~~VLDlGcG~G~~~--~~l~~~~~~~v~giDis~~~l~~ 69 (248)
.+|.=||.|.-+.. ..++..+. +|+++|+++..++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence 45777888874433 33444465 89999999998775
No 483
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=51.00 E-value=48 Score=25.15 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=51.4
Q ss_pred eEEEEcCCCCccHhHH-HHcCCCeEEEEeCChHHHHHHHHHHHhcCC------CceEEEEEcCCCCCchhhhhcccCCce
Q 025775 34 TVCDLYCGAGVDVDKW-ETALIANYIGIDVATSGIGEARDTWENQRK------NFIAEFFEADPCAENFETQMQEKANQA 106 (248)
Q Consensus 34 ~VLDlGcG~G~~~~~l-~~~~~~~v~giDis~~~l~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~f 106 (248)
+|.=||+|.++.+... +.....+|+-...+++.++.-+..-..... ..++. ...| +.+.+ ...
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~d-----l~~a~----~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTD-----LEEAL----EDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESS-----HHHHH----TT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccC-----HHHHh----Ccc
Confidence 3566888876655433 222334899999999777765543221110 01121 1222 22222 356
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
|+|+..---+ ..+.+++++...++++-.++..
T Consensus 71 d~IiiavPs~-------~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 71 DIIIIAVPSQ-------AHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp SEEEE-S-GG-------GHHHHHHHHTTTSHTT-EEEET
T ss_pred cEEEecccHH-------HHHHHHHHHhhccCCCCEEEEe
Confidence 8876543222 2678999999999777777654
No 484
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=50.95 E-value=20 Score=24.90 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=25.6
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (248)
Q Consensus 103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 152 (248)
...+|+++... +. .--.+.+..+...++-||.+++.+|+.+..
T Consensus 9 G~e~~~~i~d~--~~-----g~~pnal~a~~gtv~gGGllill~p~~~~w 51 (92)
T PF08351_consen 9 GQEFDLLIFDA--FE-----GFDPNALAALAGTVRGGGLLILLLPPWESW 51 (92)
T ss_dssp T--BSSEEEE---SS--------HHHHHHHHTTB-TT-EEEEEES-GGGT
T ss_pred CCccCEEEEEc--cC-----CCCHHHHHHHhcceecCeEEEEEcCCHHHh
Confidence 45688876654 11 113567888899999999999999986543
No 485
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=50.92 E-value=6.6 Score=27.33 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=11.2
Q ss_pred EEEEcCCCCccHhHH
Q 025775 35 VCDLYCGAGVDVDKW 49 (248)
Q Consensus 35 VLDlGcG~G~~~~~l 49 (248)
-+|||||.|.....-
T Consensus 6 NIDIGcG~GNTmda~ 20 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAA 20 (124)
T ss_pred ccccccCCCcchhhh
Confidence 379999999765433
No 486
>PRK08862 short chain dehydrogenase; Provisional
Probab=50.80 E-value=1.1e+02 Score=24.74 Aligned_cols=80 Identities=9% Similarity=-0.015 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
++..+|=.|++.|- .+..++..+. +|+.++.+++.++...+.....+ .++..+++|+.+..-.. .....-
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35678888888763 2234444465 89999999988877666554332 23667788886633111 111122
Q ss_pred C-ceeEEEecc
Q 025775 104 N-QADLVCCFQ 113 (248)
Q Consensus 104 ~-~fD~V~~~~ 113 (248)
+ ..|+++...
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 4 789887765
No 487
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.62 E-value=97 Score=26.48 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=54.6
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch---hhhhcc--
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF---ETQMQE-- 101 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~-- 101 (248)
+.++.+||=.|+|. |..+..+++. +...++.++.++...+.+++. .. -.++.. .+... ...+..
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~--g~-----~~vi~~--~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL--GA-----THTVNV--RTEDTPESAEKIAELL 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc--CC-----cEEecc--ccccchhHHHHHHHHh
Confidence 45788888888764 5555555554 443488998888777666442 11 111211 11111 111110
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
....+|+|+..... ...+....+.|+++|.++..
T Consensus 231 ~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 GGKGPDVVIECTGA----------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 23459999753311 12466677899999998865
No 488
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=50.61 E-value=1.7e+02 Score=25.96 Aligned_cols=105 Identities=10% Similarity=0.163 Sum_probs=58.4
Q ss_pred chhhhhHhHHH---HHHHHHhcCCCCeEEEEcCCCCcc-HhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEE
Q 025775 11 LTHHRLYEFAK---TALIKIYSHPYVTVCDLYCGAGVD-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF 86 (248)
Q Consensus 11 ~~~~~~~~~~~---~~li~~~~~~~~~VLDlGcG~G~~-~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~ 86 (248)
.....+.+|++ +.+++....++..+.=-+||.... +..+...+...+.++|-+ .-+..|++.+... ..+
T Consensus 244 lsp~~f~ef~~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~-~dl~~ak~~~g~~------~~i 316 (378)
T cd03308 244 LRPKQFEKFYWPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKGKTVGLFEY-GDPKKVKEKLGDK------KCI 316 (378)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCC-CCHHHHHHHhCCC------EEE
Confidence 34455667765 344444433444444488998764 445555555446666655 5667777765532 256
Q ss_pred EcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhcccc-CCcEEEE
Q 025775 87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK-PGGYFLG 144 (248)
Q Consensus 87 ~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~~i~ 144 (248)
++++... + + ...+.+...+..+++.+... .+|+++.
T Consensus 317 ~GNl~p~---------------~-----L--~~Gt~e~i~~~v~~~l~~~~~~~gfIl~ 353 (378)
T cd03308 317 AGGFPTT---------------L-----L--KYGTPEECIDYVKELLDTLAPGGGFIFG 353 (378)
T ss_pred EcCCCCH---------------H-----H--hcCCHHHHHHHHHHHHHHhCCCCCEEEe
Confidence 6765111 1 1 11356667777777777766 4665543
No 489
>PRK07109 short chain dehydrogenase; Provisional
Probab=50.40 E-value=1.7e+02 Score=25.26 Aligned_cols=80 Identities=11% Similarity=-0.076 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hccc
Q 025775 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~ 102 (248)
++.+||=.|++.| .... ++..+. +|+.++.+++.++...+.....+ .++.++.+|+.+..-... ....
T Consensus 7 ~~k~vlITGas~g-IG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITGASAG-VGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3467777776543 2332 333455 89999999887776655554332 347788999977432111 1112
Q ss_pred CCceeEEEeccc
Q 025775 103 ANQADLVCCFQH 114 (248)
Q Consensus 103 ~~~fD~V~~~~~ 114 (248)
-++.|+++....
T Consensus 83 ~g~iD~lInnAg 94 (334)
T PRK07109 83 LGPIDTWVNNAM 94 (334)
T ss_pred CCCCCEEEECCC
Confidence 357898877654
No 490
>PRK07904 short chain dehydrogenase; Provisional
Probab=50.38 E-value=1.3e+02 Score=24.52 Aligned_cols=82 Identities=10% Similarity=-0.119 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCCCccHhHHH----HcCCCeEEEEeCChHH-HHHHHHHHHhcCCCceEEEEEcCCCCCch----hhhhcc
Q 025775 31 PYVTVCDLYCGAGVDVDKWE----TALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQE 101 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l~----~~~~~~v~giDis~~~-l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~ 101 (248)
.+.+||=.|++.| ....++ +.+..+|+.++-+++. ++.+.+.....+ ..++.++++|+.+..- .+....
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh
Confidence 4567888888654 333333 3333489999988764 655544443322 1247889999976432 111111
Q ss_pred cCCceeEEEeccch
Q 025775 102 KANQADLVCCFQHL 115 (248)
Q Consensus 102 ~~~~fD~V~~~~~l 115 (248)
.+..|++++..+.
T Consensus 85 -~g~id~li~~ag~ 97 (253)
T PRK07904 85 -GGDVDVAIVAFGL 97 (253)
T ss_pred -cCCCCEEEEeeec
Confidence 2578977765433
No 491
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=50.01 E-value=1.4e+02 Score=25.40 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=53.8
Q ss_pred cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
..++.+||=.|||. |..+..++.....+++.++.+++.++.+++ +.. ..++ +..+.++...+... ..+|
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~------~~~i--~~~~~~~~~~~~~~-~~~d 230 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGA------HHYI--DTSKEDVAEALQEL-GGAK 230 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCC------cEEe--cCCCccHHHHHHhc-CCCC
Confidence 34678899998654 444444444422379999998887776643 211 1112 11222222222111 3578
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+.... . ...+..+.+.|+++|.++..
T Consensus 231 ~vi~~~g------~----~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 231 LILATAP------N----AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred EEEECCC------c----hHHHHHHHHHcccCCEEEEE
Confidence 8864221 1 13456677789999998865
No 492
>PRK07814 short chain dehydrogenase; Provisional
Probab=49.68 E-value=1.1e+02 Score=24.91 Aligned_cols=80 Identities=13% Similarity=-0.045 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h---ccc
Q 025775 31 PYVTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~---~~~ 102 (248)
++.++|=.|.+. ..... ++..+. +|++++.+++.++...+.....+ .++.++.+|+.+..-... + ...
T Consensus 9 ~~~~vlItGasg-gIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGR-GLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467788888544 33333 334465 89999999887766555443322 247788999977442111 1 111
Q ss_pred CCceeEEEeccc
Q 025775 103 ANQADLVCCFQH 114 (248)
Q Consensus 103 ~~~fD~V~~~~~ 114 (248)
-++.|+|+....
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 246898877543
No 493
>PRK06484 short chain dehydrogenase; Validated
Probab=49.25 E-value=2.1e+02 Score=26.19 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCC---ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
++..+|=.|++.| ..+..++..+. +|+.++.+.+.++....... .++.++++|+.+..-.. .+....
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG-----PDHHALAMDVSDEAQIREGFEQLHREF 77 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC-----CceeEEEeccCCHHHHHHHHHHHHHHh
Confidence 3567787777665 22233344455 89999988877765544331 13667899987643211 111123
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
++.|+++...+.
T Consensus 78 g~iD~li~nag~ 89 (520)
T PRK06484 78 GRIDVLVNNAGV 89 (520)
T ss_pred CCCCEEEECCCc
Confidence 578988876543
No 494
>PRK07454 short chain dehydrogenase; Provisional
Probab=49.10 E-value=1.4e+02 Score=23.91 Aligned_cols=80 Identities=6% Similarity=-0.083 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCCccHhHH----HHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775 32 YVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (248)
Q Consensus 32 ~~~VLDlGcG~G~~~~~l----~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~ 103 (248)
+.++|=.|+ +|.....+ ++.+. +|++++.++...+...+.....+ .++.++++|+.+..-.. ...+..
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 457788885 44433333 33455 89999998876655544443321 24788999998743211 111123
Q ss_pred CceeEEEeccch
Q 025775 104 NQADLVCCFQHL 115 (248)
Q Consensus 104 ~~fD~V~~~~~l 115 (248)
++.|+++...+.
T Consensus 82 ~~id~lv~~ag~ 93 (241)
T PRK07454 82 GCPDVLINNAGM 93 (241)
T ss_pred CCCCEEEECCCc
Confidence 568988776543
No 495
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=49.02 E-value=1.5e+02 Score=24.24 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=39.2
Q ss_pred CCCeEEEEcCCCCcc--HhHHHH---cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC
Q 025775 31 PYVTVCDLYCGAGVD--VDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~--~~~l~~---~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~ 90 (248)
....+++.+|+.|.. +..|+. +-.+++++|-.++..+...++.....+....++|+.++.
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 345688887665432 333332 234589999999998877777766555433468888874
No 496
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=48.68 E-value=1.1e+02 Score=26.81 Aligned_cols=94 Identities=18% Similarity=0.081 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHH-HHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (248)
Q Consensus 30 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~-l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD 107 (248)
.++.+||=.|+|. |..+..+++....+++++|.+++. .+.+++ .+ +.... +..+.. .+.+..+.+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lG----a~~~i-~~~~~~---~v~~~~~~~D 244 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LG----ADSFL-VTTDSQ---KMKEAVGTMD 244 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CC----CcEEE-cCcCHH---HHHHhhCCCc
Confidence 3688899888875 544455555433378999887654 333322 22 11111 111110 1111123588
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (248)
Q Consensus 108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 145 (248)
+|+-... ....+....+.+++||.++..
T Consensus 245 ~vid~~G----------~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 245 FIIDTVS----------AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred EEEECCC----------cHHHHHHHHHhhcCCCEEEEE
Confidence 8864321 112456667789999998865
No 497
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=48.67 E-value=1.5e+02 Score=24.39 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCCh
Q 025775 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT 64 (248)
Q Consensus 31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis~ 64 (248)
...+|+=+|||. |..+ ..++..+.++++-+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 468999999984 5444 344455778888887543
No 498
>PRK07791 short chain dehydrogenase; Provisional
Probab=48.54 E-value=1.3e+02 Score=25.09 Aligned_cols=82 Identities=12% Similarity=-0.057 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCCcc---HhHHHHcCCCeEEEEeCCh---------HHHHHHHHHHHhcCCCceEEEEEcCCCCCchh--
Q 025775 31 PYVTVCDLYCGAGVD---VDKWETALIANYIGIDVAT---------SGIGEARDTWENQRKNFIAEFFEADPCAENFE-- 96 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~---~~~l~~~~~~~v~giDis~---------~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-- 96 (248)
++.++|=.|++.|-- +..++..+. +++.+|.+. +.++.+.+.....+ .++.++.+|+.+..-.
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHHH
Confidence 467888888776521 123334455 788888764 44444444333222 2467888999774321
Q ss_pred --hhhcccCCceeEEEeccch
Q 025775 97 --TQMQEKANQADLVCCFQHL 115 (248)
Q Consensus 97 --~~~~~~~~~fD~V~~~~~l 115 (248)
....+..++.|+++...+.
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 1111123678988776544
No 499
>PRK07102 short chain dehydrogenase; Provisional
Probab=48.35 E-value=1.2e+02 Score=24.24 Aligned_cols=78 Identities=8% Similarity=-0.056 Sum_probs=43.2
Q ss_pred CeEEEEcCCCCccHhH----HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-hhhcccCCcee
Q 025775 33 VTVCDLYCGAGVDVDK----WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQMQEKANQAD 107 (248)
Q Consensus 33 ~~VLDlGcG~G~~~~~----l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~fD 107 (248)
.+||=.|+.. +.... +++.+. +|+++|.+++..+...+...... ..++.++++|+.+..-. ..+......+|
T Consensus 2 ~~vlItGas~-giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGATS-DIARACARRYAAAGA-RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcCCc-HHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 3577777543 33333 333455 89999998876654433332211 12488999999774321 11111123578
Q ss_pred EEEecc
Q 025775 108 LVCCFQ 113 (248)
Q Consensus 108 ~V~~~~ 113 (248)
++++..
T Consensus 79 ~vv~~a 84 (243)
T PRK07102 79 IVLIAV 84 (243)
T ss_pred EEEECC
Confidence 887644
No 500
>PRK06196 oxidoreductase; Provisional
Probab=48.19 E-value=1.2e+02 Score=25.66 Aligned_cols=77 Identities=10% Similarity=-0.175 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCCccHhHH----HHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775 31 PYVTVCDLYCGAGVDVDKW----ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (248)
Q Consensus 31 ~~~~VLDlGcG~G~~~~~l----~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~ 102 (248)
.+.+||=.|++. +....+ +..+. +|++++.+++.++.+.+... .+.++.+|+.+..-.. .....
T Consensus 25 ~~k~vlITGasg-gIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 25 SGKTAIVTGGYS-GLGLETTRALAQAGA-HVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhc
Confidence 467788888654 333333 33455 89999998876665544332 1678899997743211 11112
Q ss_pred CCceeEEEeccch
Q 025775 103 ANQADLVCCFQHL 115 (248)
Q Consensus 103 ~~~fD~V~~~~~l 115 (248)
.+..|+++...+.
T Consensus 97 ~~~iD~li~nAg~ 109 (315)
T PRK06196 97 GRRIDILINNAGV 109 (315)
T ss_pred CCCCCEEEECCCC
Confidence 3578998876643
Done!