BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025777
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 15/174 (8%)
Query: 68 ATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET 127
+ G + G+N+DTD I+PA YL V + P+E L + + G + + +
Sbjct: 3 SIIKGRVWKFGNNVDTDAILPARYL--VYTKPEE---LAQFVMTGADPDFPKKVKPGD-- 55
Query: 128 KTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
II+ G NFGCGSSREHAP+ L AG S V+AES+ARIF+RN++ G PL
Sbjct: 56 -----IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVG--LPLIECK 108
Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
+ E+ + GD + + + + N TTG+ K + + + + +++AGG+ Y +K
Sbjct: 109 GISEKVNEGDELEVNLETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKK 162
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
G + GD++DTD IIP YL D YE L S+ + G+ + + + +
Sbjct: 3 IKGRAHKFGDDVDTDAIIPGPYL----RTTDPYE-LASHCMAGIDENFPKKVKEGD---- 53
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
+I+AG NFGCGSSRE A +A+ G AV+A+S+ARIF+RN++ G I P+ +
Sbjct: 54 ---VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLI-PIIANT-- 107
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLK-PIGDLGPVIDAGGIFAYARKTGMIASR 247
+E GD+V I++ + ++ K K + P G ++ AGG+ Y +K +I S+
Sbjct: 108 -DEIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLEREILAAGGLVNYLKKRKLIQSK 165
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 36/170 (21%)
Query: 76 VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT------ 129
++ DNIDTDQI+P ++L L+ + G Y + Y R++D N T+
Sbjct: 31 LMNDNIDTDQILPKQFLKLIDK-----KGFGKYLM------YEWRYLDNNYTENPDFIFN 79
Query: 130 --KYK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG---EIY 181
+Y+ I+I G NFG GSSREHA AL G +VA S+ I + N + G I
Sbjct: 80 QPEYREASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPIIQ 139
Query: 182 PLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDA 231
P + +L + T D VT+ + E ++ + P+GD ID
Sbjct: 140 PKEVRDKLAKLKPT-DEVTVNLFEQKIYS----------PVGDFSFDIDG 178
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 72 GLCYVVGDNIDTDQIIPAEY-LTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
G + GD+I TD+I P Y LT +P E K+ A I + +
Sbjct: 5 GKVWKFGDDISTDEITPGRYNLT---KDPKELAKI---AFIEVRPDFA-------RNVRP 51
Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
+++AG NFG GSSRE A +AL A G + V+AES+ RIF+RN++ G L
Sbjct: 52 GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----T 107
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYK------LKPIGD-LGPVIDAGGIFAYARKTGM 243
E GD+VT +N TG+ K +P+ D L ++ GGI Y R+ G
Sbjct: 108 EGLKDGDLVT--------VNWETGEVRKGDEILMFEPLEDFLLEIVREGGILEYIRRRGD 159
Query: 244 IASR 247
+ R
Sbjct: 160 LCIR 163
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 23/111 (20%)
Query: 80 NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET---------KTK 130
NIDTDQIIP ++L V G + R++D+ E+ K +
Sbjct: 21 NIDTDQIIPKQFLLAVSKQG-----------FGKHLFHDLRYLDDKESVLNXDFNLNKKE 69
Query: 131 YK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG 178
Y+ I+++ NFG GSSREHAP AL G A++A S+A IF N++ G
Sbjct: 70 YQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNG 120
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 80 NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTR--FIDENETKTKYKIIIAG 137
N+DTDQIIPA +L V E GL A + + F+ + +++AG
Sbjct: 21 NVDTDQIIPAVFLKRVTRTGFED---------GLFAGWRSDPAFVLNLSPFDRGSVLVAG 71
Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
+FG GSSREHA AL G V++ + IF N+ G L E + D
Sbjct: 72 PDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAG---------LLAAEVAQDD 122
Query: 198 VVTIEIAESRLINHTTGKE 216
V + +LI + G E
Sbjct: 123 VEILW----KLIEQSPGLE 137
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 80 NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTR--FIDENETKTKYKIIIAG 137
N+DTDQIIPA +L V E GL A + + F+ + +++AG
Sbjct: 21 NVDTDQIIPAVFLKRVTRTGFED---------GLFAGWRSDPAFVLNLSPFDRGSVLVAG 71
Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
+FG GSSREHA AL G V++ + IF N+ G L E + D
Sbjct: 72 PDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAG---------LLAAEVAQDD 122
Query: 198 VVTIEIAESRLINHTTGKE 216
V + +LI + G E
Sbjct: 123 VELL----WKLIEQSPGLE 137
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 80 NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTR--FIDENETKTKYKIIIAG 137
N+DTDQIIPA +L V E GL A + + F+ + +++AG
Sbjct: 21 NVDTDQIIPAVFLKRVTRTGFED---------GLFAGWRSDPAFVLNLSPFDRGSVLVAG 71
Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
+FG GSSREHA AL G V++ + IF N+ G L E + D
Sbjct: 72 PDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAG---------LLAAEVAQDD 122
Query: 198 VVTIEIAESRLINHTTGKE 216
V + +LI + G E
Sbjct: 123 VELL----WKLIEQSPGLE 137
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 62/152 (40%), Gaps = 49/152 (32%)
Query: 77 VGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGS------------YALIGLP 114
+GD++ TD I PA YLT P E+ GS +A I L
Sbjct: 690 LGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRL- 748
Query: 115 ATYTTRFIDENETKT----------------KYK------IIIAGGNFGCGSSREHAPVA 152
RF+++ +T +Y+ I++AG +G GSSR+ A
Sbjct: 749 ---LNRFLNKQAPQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKG 805
Query: 153 LGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184
G AV+AESY RI N V G I PL+
Sbjct: 806 PFLLGIKAVLAESYERIHRSNLVGMGVI-PLE 836
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 41/148 (27%)
Query: 77 VGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGS------------YALIGL- 113
+GD++ TD I PA YLT P E+ GS +A I L
Sbjct: 670 LGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLL 729
Query: 114 --------PATY---TTRFIDENETKTKYK------IIIAGGNFGCGSSREHAPVALGAA 156
P T + +D + +Y+ I++AG +G GSSR+ A
Sbjct: 730 NRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLL 789
Query: 157 GCSAVVAESYARIFFRNSVATGEIYPLD 184
G AV+AESY RI N V G I PL+
Sbjct: 790 GIKAVLAESYERIHRSNLVGMGVI-PLE 816
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 114 PATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRN 173
P T R+ ++ + ++I N+G GSSREH+ + G A++ +S+ARI N
Sbjct: 615 PVPDTARYYKQHGIRW---VVIGDENYGEGSSREHSALEPRHLGGRAIITKSFARIHETN 671
Query: 174 SVATGEIYPL 183
G + PL
Sbjct: 672 LKKQG-LLPL 680
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 114 PATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRN 173
P T R+ ++ + ++I N+G GSSREH+ + G A++ +S+ARI N
Sbjct: 615 PVPDTARYYKQHGIRW---VVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETN 671
Query: 174 SVATGEIYPL 183
G + PL
Sbjct: 672 LKKQG-LLPL 680
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 114 PATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRN 173
P T R+ ++ + ++I N+G GSSREH+ + G A++ +S+ARI N
Sbjct: 615 PVPDTARYYKQHGIRW---VVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETN 671
Query: 174 SVATGEIYPL 183
G + PL
Sbjct: 672 LKKQG-LLPL 680
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 34 FTTGNGRAAVTFQRAVSVIPKATSADSRATKEPTATFHGLCYVVGDNIDTDQIIPAEYLT 93
F +G+ Q + V K T+ D + P F G DNI + +I A +
Sbjct: 543 FDKWDGKDLEDLQILIKVKGKCTT-DHISAAGPWLKFRGHL----DNISNNLLIGAINIE 597
Query: 94 LVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVAL 153
+N + P T R+ ++ + ++I N+G G+SREH+ +
Sbjct: 598 NRKANSVRNAVTQEFG----PVPDTARYYKQHGIRW---VVIGDENYGEGASREHSALEP 650
Query: 154 GAAGCSAVVAESYARIFFRNSVATGEIYPL 183
G A++ +S+ARI N G + PL
Sbjct: 651 RHLGGRAIITKSFARIHETNLKKQG-LLPL 679
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 114 PATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRN 173
P T R+ ++ + ++I N+G G+SREH+ + G A++ +S+ARI N
Sbjct: 614 PVPDTARYYKQHGIRW---VVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETN 670
Query: 174 SVATGEIYPL 183
G + PL
Sbjct: 671 LKKQG-LLPL 679
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 114 PATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRN 173
P T R+ ++ + ++I N+G G+SREH+ + G A++ +S+ARI N
Sbjct: 615 PVPDTARYYKQHGIRW---VVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETN 671
Query: 174 SVATGEIYPL 183
G + PL
Sbjct: 672 LKKQG-LLPL 680
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 114 PATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRN 173
P T R+ ++ + ++I N+G GSSREH + G A++ +S+ARI N
Sbjct: 615 PVPDTARYYKQHGIRW---VVIGDENYGEGSSREHRALEPRFLGGRAIITKSFARIHETN 671
Query: 174 SVATGEIYPL 183
G + PL
Sbjct: 672 LKKQG-LLPL 680
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 114 PATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRN 173
P T R+ ++ + ++I N+G GSS+EH+ + G A++ +S+ARI N
Sbjct: 614 PVPDTARYYKQHGIRW---VVIGDENYGEGSSQEHSALEPRHLGGRAIITKSFARIHETN 670
Query: 174 SVATGEIYPL 183
G + PL
Sbjct: 671 LKKQG-LLPL 679
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 112 GLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFF 171
GLP T+ ++ + + + GG F G CSA+V + R+F+
Sbjct: 256 GLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFG-------GWGFEQCSALVNHEFERVFY 308
Query: 172 RNSVATG 178
+N++A G
Sbjct: 309 KNNMAAG 315
>pdb|2ZWI|A Chain A, Crystal Structure Of AlphaBETA-Galactoside Alpha-2,3-
Sialyltransferase From A Luminous Marine Bacterium,
photobacterium Phosphoreum
pdb|2ZWI|B Chain B, Crystal Structure Of AlphaBETA-Galactoside Alpha-2,3-
Sialyltransferase From A Luminous Marine Bacterium,
photobacterium Phosphoreum
Length = 373
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 29 PHSLKFTTGNGRAAVTFQRAVSVIPKATSADSRATK------------EPTATFHGLCYV 76
PH G T ++ + ++ +A DS P+AT++
Sbjct: 233 PHENFIFIGTNSGTATAEQQIDILTEAKKPDSPIITNSIQGLDLFFKGHPSATYNQQIID 292
Query: 77 VGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFI 122
+ I+ IP E L + + PD +GS LP T +FI
Sbjct: 293 AHNMIEIYNKIPFEALIMTDALPDAVGGMGSSVFFSLPNTVENKFI 338
>pdb|1JYH|A Chain A, Crystal Structure Of The Escherichia Coli Sbmc Protein
(Aka Gyrase Inhibitory Protein Gyri, Aka Yeeb)
Length = 157
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 81 IDTDQIIPAEYLTLVPSNPDE--YEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGG 138
+D+ I+P E++ + NPDE EKL ++ +P +T E T+ I GG
Sbjct: 37 VDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE----ITGG 92
Query: 139 NFGCGSSR 146
+ +R
Sbjct: 93 QYAVAVAR 100
>pdb|4B6A|TT Chain t, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 614
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 175 VATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYK 218
V +GE+Y +D + E C+ +VT+E +S TGK +K
Sbjct: 332 VQSGEVYLIDLKMASLEHCTKKGLVTLETVDSY-----TGKSHK 370
>pdb|3D3N|A Chain A, Crystal Structure Of LipaseESTERASE (LP_2923) FROM
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr108
pdb|3D3N|B Chain B, Crystal Structure Of LipaseESTERASE (LP_2923) FROM
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr108
Length = 284
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 117 YTTRFIDENETKTKY--KIIIAGGNFGCGSSREHAPVA--LGAAGCSAVV 162
Y I + ET Y II GG F S RE AP+A AAG VV
Sbjct: 20 YWLDQISDFETAVDYPIXIICPGGGFTYHSGREEAPIATRXXAAGXHTVV 69
>pdb|3BXP|A Chain A, Crystal Structure Of A Putative Carboxylesterase (lp_2923)
From Lactobacillus Plantarum Wcfs1 At 1.70 A Resolution
pdb|3BXP|B Chain B, Crystal Structure Of A Putative Carboxylesterase (lp_2923)
From Lactobacillus Plantarum Wcfs1 At 1.70 A Resolution
Length = 277
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 117 YTTRFIDENETKTKY--KIIIAGGNFGCGSSREHAPVA--LGAAGCSAVV 162
Y I + ET Y II GG F S RE AP+A AAG VV
Sbjct: 21 YWLDQISDFETAVDYPIXIICPGGGFTYHSGREEAPIATRXXAAGXHTVV 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,294,161
Number of Sequences: 62578
Number of extensions: 307649
Number of successful extensions: 705
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 27
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)