BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025777
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B5YHE5|LEUD_THEYD 3-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=leuD PE=3 SV=1
Length = 168
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 15/170 (8%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GDNIDTD IIPA YL S+P E L + + +++ ++
Sbjct: 5 GKVWKFGDNIDTDAIIPARYLNT--SDPKE---LAKHVMEDADSSFPSKV-------KPG 52
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
IIIAG NFGCGSSREHAP+A+ A+G AV+A+SYARIFFRN+ G P+ L +
Sbjct: 53 DIIIAGRNFGCGSSREHAPIAIKASGIRAVIAKSYARIFFRNAFNIG--LPIFEVPELID 110
Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
E + GD V I++ ++IN T GK+Y KPI + +I AGG+ + +K
Sbjct: 111 ETNEGDEVEIDMNSGQIINLTKGKKYNTKPIPPFMQELIKAGGLVEWTKK 160
>sp|Q9WZ25|LEUD2_THEMA 3-isopropylmalate dehydratase small subunit 2 OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=leuD2 PE=3 SV=1
Length = 166
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 100/175 (57%), Gaps = 15/175 (8%)
Query: 67 TATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENE 126
G +V GDN++TD+IIPA YL S+P E L Y + + R
Sbjct: 2 VVKIKGKVFVFGDNVNTDEIIPARYLN--TSDPQE---LAKYCMEDARPGFGRR------ 50
Query: 127 TKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE 186
K II+AG NFGCGSSREHAPVA+ AAG S V+A+S+ARIFFRN++ G P+ E
Sbjct: 51 DDIKGSIIVAGENFGCGSSREHAPVAIKAAGISCVIAKSFARIFFRNAINIG--LPI-VE 107
Query: 187 ARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
+ +E GD+ +++ + N T GKEY+++P + L +++AGG Y K
Sbjct: 108 LKEADEFEEGDIAEVDLENGVVRNLTKGKEYRIRPYPEFLMKIMEAGGWLEYCLK 162
>sp|Q8U2A0|LEUD1_PYRFU 3-isopropylmalate dehydratase small subunit 1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=leuD1 PE=3 SV=1
Length = 164
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 98/174 (56%), Gaps = 21/174 (12%)
Query: 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
G + GDNIDTD IIPA YL S+P E L + L L + E + K
Sbjct: 4 RGRAWKYGDNIDTDVIIPARYLNT--SDPKE---LAQHVLEDL----------DPEFRYK 48
Query: 131 YK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
K II+AG NFGCGSSREHAP+A+ AAG SAV+A+S+ARIF+RN++ G P+
Sbjct: 49 MKPGDIIVAGENFGCGSSREHAPLAIKAAGVSAVIAKSFARIFYRNAINIG--LPILEAP 106
Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
E TGD + I+ + + N T G+ Y P + + +I AGG+ +A++
Sbjct: 107 EAVERIETGDEIEIDFSTGEIRNLTKGEVYHANPFPEFIMEIIKAGGLVEWAKR 160
>sp|Q9UZ06|LEUD1_PYRAB 3-isopropylmalate dehydratase small subunit 1 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=leuD1 PE=3 SV=1
Length = 164
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 21/174 (12%)
Query: 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
G + GDNIDTD IIPA YL S+P E L + L L + E ++K
Sbjct: 4 RGRAWKYGDNIDTDVIIPARYLNT--SDPKE---LAKHVLEDL----------DPEFRSK 48
Query: 131 YK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
K II+AG NFGCGSSREHAP+A+ AAG S V+A+S+ARIF+RN++ G P+
Sbjct: 49 MKPGDIIVAGENFGCGSSREHAPLAIKAAGVSCVIAKSFARIFYRNAINIG--LPILEAP 106
Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
+ + TGD + ++ + + N T G+ Y+ P D + +I AGG+ +A++
Sbjct: 107 QAVDRIETGDELEVDFSSGEIRNLTKGEVYRANPFPDFIMEIIKAGGLVEWAKR 160
>sp|O67399|LEUD_AQUAE 3-isopropylmalate dehydratase small subunit OS=Aquifex aeolicus
(strain VF5) GN=leuD PE=3 SV=2
Length = 168
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 14/172 (8%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
F G + GDN+DTDQIIPA YL + D YE L + + + F E++
Sbjct: 5 FRGRVWKFGDNVDTDQIIPARYL----NTSDPYE-LAKHVM---EDSEHPEFAKEHKEGD 56
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
II+AG NFG GSSREHAP+A+ +G V+A+S+ARIFFRN++ G P+
Sbjct: 57 ---IIVAGKNFGSGSSREHAPIAIKYSGVPVVIAKSFARIFFRNAINIG--LPIVEAPEA 111
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKL-KPIGDLGPVIDAGGIFAYARK 240
+E GD + +++ + + N TGKEY+ K +L ++ AGG+ AYA++
Sbjct: 112 VDEIEHGDEIEVDLEKGVIKNLRTGKEYQATKFPKELQDILKAGGLMAYAKE 163
>sp|Q7M887|LEUD_WOLSU 3-isopropylmalate dehydratase small subunit OS=Wolinella
succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 /
NCTC 11488 / FDC 602W) GN=leuD PE=3 SV=1
Length = 167
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 16/170 (9%)
Query: 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
G + G+NIDTD II A YL N + + L S+ + + F TK
Sbjct: 5 QGKVWKFGENIDTDLIIAARYL-----NTSDPQVLASHVMEDARPDFLQHF-------TK 52
Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
I+AG NFGCGSSREHAPVAL AG SAV+A+S+ARIF+RNS TG P+ E +
Sbjct: 53 GDFIVAGENFGCGSSREHAPVALKTAGVSAVIAKSFARIFYRNSFNTG--LPI-LEVKET 109
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+E GD + +++A+ + N T + Y KPI + ++++GG+ +A+
Sbjct: 110 DEIREGDTLEVDMAQGTIKNLTRNQTYAFKPIPPFMMELLESGGLIEHAK 159
>sp|B9L5K2|LEUD_NAUPA 3-isopropylmalate dehydratase small subunit OS=Nautilia
profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)
GN=leuD PE=3 SV=1
Length = 166
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 99/171 (57%), Gaps = 16/171 (9%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GDNIDTD IIPA YL S+P E L + + + ++
Sbjct: 6 GRVWKFGDNIDTDLIIPARYLNT--SDPHE---LAKHVMEDADPEFPSKV-------RPG 53
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
II+AG NFG GSSREHAP+AL AAG +AV+A+S+ARIF+RNS G P+ E +
Sbjct: 54 DIIVAGYNFGSGSSREHAPIALKAAGVAAVIAKSFARIFYRNSFNMG--LPI-FELLESD 110
Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKT 241
E + GD++ I++ + N TGK+YK PI + + +I AGG+ +A++
Sbjct: 111 EINEGDLIKIDLDNGIIHNVDTGKDYKFTPIPEFMQELIAAGGLINFAKEM 161
>sp|B9MLV3|LEUD_CALBD 3-isopropylmalate dehydratase small subunit OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)
GN=leuD PE=3 SV=1
Length = 166
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 95/171 (55%), Gaps = 15/171 (8%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
F G + DNIDTD IIPA YL S+P+E L + L L + +
Sbjct: 3 FKGKAHKYYDNIDTDVIIPARYLN--TSDPNE---LAKHCLEDLDKEFVNKV-------Q 50
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
K I++AG NFGCGSSREHAP+A+ A G S V+A+S+ARIF+RN++ G P+
Sbjct: 51 KGDILVAGKNFGCGSSREHAPIAIKACGVSCVIAKSFARIFYRNAINIG--LPIVECEEA 108
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+ GD V +++ + N T GKE+K KP + + ++ AGG+ + +
Sbjct: 109 VDGIEAGDEVEVDLVNGIIKNLTKGKEFKAKPFPEFMQNIMKAGGLIEFVK 159
>sp|Q30WD2|LEUD_DESDG 3-isopropylmalate dehydratase small subunit OS=Desulfovibrio
desulfuricans (strain G20) GN=leuD PE=3 SV=1
Length = 167
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 15/172 (8%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
++G VGD+IDTD IIPA +L V ++P +LG+ + GL + +R
Sbjct: 3 YNGTARKVGDHIDTDAIIPARFL--VTTDP---AQLGANCMEGLEHGWVSRV-------Q 50
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
+ I++ G NFGCGSSREHAP+A+ AG VVA S+ARIF+RN G I L
Sbjct: 51 QGDIMVGGKNFGCGSSREHAPIAILGAGMPVVVAHSFARIFYRNGFNMGLI--LIEIGDD 108
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
+ GDV+++++ R+ NHTTG P+ + ++D GG+ Y R+
Sbjct: 109 ADRIHDGDVLSVDVENGRITNHTTGDVISCPPLPPFMHDILDKGGLVPYVRE 160
>sp|Q30RK1|LEUD_SULDN 3-isopropylmalate dehydratase small subunit OS=Sulfurimonas
denitrificans (strain ATCC 33889 / DSM 1251) GN=leuD
PE=3 SV=1
Length = 167
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 97/175 (55%), Gaps = 20/175 (11%)
Query: 68 ATFHGLCYVVGDNIDTDQIIPAEYL-TLVPSNPDEYEKLGSYALIGLPATYTTRFIDENE 126
A G + G +IDTD II A YL T VP E+L + + + +
Sbjct: 4 ANIDGKVWRFGKDIDTDLIIAARYLSTSVP------EELAKHVMEDADPQFVKKM----- 52
Query: 127 TKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG-EIYPLDS 185
+ II+AG NFGCGSSREHAP+AL AAG +AV+A ++ARIF+RN+ G I+ L
Sbjct: 53 --SSGDIIVAGENFGCGSSREHAPIALKAAGVAAVIAPTFARIFYRNAFNMGLPIFELQE 110
Query: 186 EARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
A + E GD +++++ + N T+ K YK PI + +IDAGG+ +A+
Sbjct: 111 SAEIAE----GDEISVDMNNGTITNKTSSKVYKFIPIPQFMQELIDAGGLMNFAQ 161
>sp|B8I4G1|LEUD_CLOCE 3-isopropylmalate dehydratase small subunit OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=leuD PE=3 SV=1
Length = 163
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 15/165 (9%)
Query: 78 GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAG 137
G+N+DTD IIPA YL S+P E L S+ + L +T R K +++AG
Sbjct: 11 GNNVDTDVIIPARYLN--TSDPAE---LASHCMEDLDEKFTQRV-------QKGDVMVAG 58
Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
NFGCGSSREHAP+++ A+G S V+AE++ARIF+RN+V G P+ + ++ D
Sbjct: 59 KNFGCGSSREHAPISIKASGISCVIAETFARIFYRNAVNIG--LPIIECSEAAKDIKDND 116
Query: 198 VVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKT 241
V I+ + + N TTGK Y+ +P + + +I A G+ Y + +
Sbjct: 117 QVEIDFDKGLIKNLTTGKTYQGQPFPEFMQEIISADGLIQYIKNS 161
>sp|O26917|LEUD1_METTH 3-isopropylmalate dehydratase small subunit 1
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=leuD1 PE=3 SV=1
Length = 170
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 18/172 (10%)
Query: 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
G + GDN+DTD IIP YL ++L S+ + G + ++ K
Sbjct: 6 RGRVWRFGDNVDTDMIIPGRYLRTFS-----LDELASHVMEGARPEFASQV-------RK 53
Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
II+AG NFGCGSSRE APVAL AG A++AES+ARIF+RN++ G P+ A++
Sbjct: 54 GDIIVAGRNFGCGSSREQAPVALKHAGVVAIIAESFARIFYRNAINIG--LPV-IMAKV- 109
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKT 241
+ GD V+I++ ++ N T G EY++KP D + +++ GG+ + KT
Sbjct: 110 -DADDGDEVSIDLRSGQIRNLTAGSEYRMKPFNDYMLSILEDGGLVNHYLKT 160
>sp|Q97EE1|LEUD_CLOAB 3-isopropylmalate dehydratase small subunit OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=leuD PE=3 SV=1
Length = 163
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 78 GDNIDTDQIIPAEYL-TLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIA 136
GDNIDTD IIPA YL T VP E+L + + L + + KT I++
Sbjct: 11 GDNIDTDVIIPARYLNTSVP------EELAKHCMEDLDVDFLKKL------KTG-DIVVG 57
Query: 137 GGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTG 196
G NFGCGSSREHAP+ + AAG S V+A+S+ARIF+RNS+ G +P+ + STG
Sbjct: 58 GRNFGCGSSREHAPICIKAAGVSCVIAKSFARIFYRNSINIG--FPILECEEAVNDASTG 115
Query: 197 DVVTIEIAESRLINHTTGKEYKLKPIGDL 225
D + ++ E + N T KEYK +P D
Sbjct: 116 DKLEVDFIEGIIKNVTLNKEYKAQPFPDF 144
>sp|Q8TX94|LEUD1_METKA 3-isopropylmalate dehydratase small subunit 1 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=leuD1 PE=3 SV=1
Length = 170
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 97/175 (55%), Gaps = 15/175 (8%)
Query: 69 TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK 128
G +V GD+IDTDQIIP YLT +P+E L + + G + E
Sbjct: 4 VIRGRAWVFGDDIDTDQIIPGRYLTT--QDPEE---LAKHVMEGADPEFP-------EKV 51
Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
+ +I+AG NFGCGSSREHAP+AL AAG + VV S+ARIF+RN++ G PL
Sbjct: 52 REGDVIVAGKNFGCGSSREHAPIALKAAGIACVVTRSFARIFYRNAINLG--LPLVVCPG 109
Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTG 242
+ + G + + + E + N TG+E + KP+ D + +++AGG+ ++ G
Sbjct: 110 VDDAFEDGQGIEVNLREGYVRNLDTGEELEAKPLPDFMMRILEAGGLVELIKREG 164
>sp|Q8PWT6|LEUD2_METMA 3-isopropylmalate dehydratase small subunit 2 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=leuD2 PE=3 SV=1
Length = 162
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 16/172 (9%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
G + GD++DTD +IP YL + P E L Y G+ + + + EN+
Sbjct: 1 MKGRAWKFGDDVDTDAVIPGRYLIF--NTPGE---LAKYTFEGVRPDFA-KNVHEND--- 51
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
I++AG NFGCGSSREHAP+AL + S V+A+S+ARIFFRN++ G P+ E
Sbjct: 52 ---IVVAGSNFGCGSSREHAPLALKGSKVSCVIAKSFARIFFRNAINIG--VPV-LECPD 105
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
++ GD + ++I+ + N T G+ Y+ P+ D + ++D GG+ YARK
Sbjct: 106 TDKIDDGDELEVDISTGVIQNRTKGETYQATPLPDFVREIVDEGGLIEYARK 157
>sp|A4XJ49|LEUD_CALS8 3-isopropylmalate dehydratase small subunit OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=leuD
PE=3 SV=1
Length = 173
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 15/171 (8%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
F G + DNIDTD IIPA YL S+P E L + L L + +
Sbjct: 3 FKGKAHKYYDNIDTDVIIPARYLN--TSDPAE---LAKHCLEDLDKEFVNKV-------K 50
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
K I++AG NFGCGSSREHAP+A+ A G S V+A+S+ARIF+RN++ G P+
Sbjct: 51 KGDILVAGRNFGCGSSREHAPIAIKACGVSCVIAKSFARIFYRNAINIG--LPIVECEEA 108
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+ GD V +++ + + N T KE+K KP + + ++ AGG+ + +
Sbjct: 109 VDGIEAGDEVEVDLVKGIIKNLTKNKEFKAKPFPEFMQNIMKAGGLIEFVK 159
>sp|Q8TU71|LEUD2_METAC 3-isopropylmalate dehydratase small subunit 2 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=leuD2 PE=3 SV=1
Length = 162
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 16/172 (9%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
G + GD++DTD +IP YL + P E L Y G+ + + + EN+
Sbjct: 1 MEGRAWKFGDDVDTDAVIPGRYLIF--NTPGE---LAKYTFEGVRPDFAKK-VHEND--- 51
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
I++AG NFGCGSSREHAP+AL + S V+A+S+ARIFFRN++ G P+ E
Sbjct: 52 ---IVVAGSNFGCGSSREHAPLALKGSKVSCVIAKSFARIFFRNAINIG--VPV-LECPN 105
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
+ GD + ++++ + N T G+ Y+ P+ D + ++D GG+ YARK
Sbjct: 106 TDRIDDGDELEVDLSTGDIQNITKGETYQATPLPDFVREIVDEGGLIEYARK 157
>sp|O29626|LEUD1_ARCFU 3-isopropylmalate dehydratase small subunit 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=leuD1 PE=3 SV=1
Length = 161
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 95/169 (56%), Gaps = 16/169 (9%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GD+IDTD II +YL + +E E+L + L + K
Sbjct: 2 GRAWKFGDDIDTDVIIQGKYLVI-----NEPEELAKHVFENLRPEFAKEV-------KKG 49
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
++AG NFGCGSSREHAP+AL A G AV+A+SYARIFFRN++ G + L E + +
Sbjct: 50 DFVVAGENFGCGSSREHAPLALKATGIEAVIAKSYARIFFRNAINIG-LRVL--ECKETD 106
Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+ GD + ++ + + N T G+EY + P+ D L +++ GG+ +A+
Sbjct: 107 KIEDGDELEVDYEKGVIYNKTKGEEYPINPLPDFLKEILEKGGLVEFAK 155
>sp|A8ETJ8|LEUD_ARCB4 3-isopropylmalate dehydratase small subunit OS=Arcobacter butzleri
(strain RM4018) GN=leuD PE=3 SV=1
Length = 166
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 93/173 (53%), Gaps = 18/173 (10%)
Query: 69 TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK 128
T G + G NIDTD II A YL N + E L Y + + +
Sbjct: 3 TITGKVWNFGANIDTDVIIAARYL-----NSSDPEHLAKYVMEDADPEFPKKL------- 50
Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG-EIYPLDSEA 187
K II+AG NFGCGSSREHAP+AL AAG +AVVA S+ARIF+RN+ G I+ L
Sbjct: 51 KKGDIIVAGENFGCGSSREHAPIALKAAGIAAVVAPSFARIFYRNAFNMGLPIFELPESL 110
Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+ E G+ ++I + + + N+TT K YK PI + +I GG+ YA+
Sbjct: 111 EIKE----GEEISINLDKGEITNNTTKKTYKFIPIPPFMQELIATGGLINYAK 159
>sp|B1H0A5|LEUD_UNCTG 3-isopropylmalate dehydratase small subunit OS=Uncultured termite
group 1 bacterium phylotype Rs-D17 GN=leuD PE=3 SV=1
Length = 163
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 19/173 (10%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
G + G N++TD+IIPA YL ++P + + Y ID+N K
Sbjct: 6 LKGKVHKYGSNVNTDEIIPARYLN--TTDPT------------ILSKYCMEDIDKNFVKN 51
Query: 130 KY--KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
II+A NFGCGSSREHAP+A+ A+G SAV+A S+ARIFFRNS+ G P+
Sbjct: 52 VKAGDIIVAENNFGCGSSREHAPIAIKASGISAVIANSFARIFFRNSINIG--LPILESQ 109
Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+ + GD V I + + + N T + Y+ +P + + VI +GG+ Y +
Sbjct: 110 KAVKAIENGDAVEINLTKGIIKNITKNESYQSQPFPEFMQKVIKSGGLLGYIK 162
>sp|Q58673|LEUD_METJA Isopropylmalate/citramalate isomerase small subunit
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=leuD PE=1
SV=1
Length = 168
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 15/174 (8%)
Query: 68 ATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET 127
+ G + G+N+DTD I+PA YL V + P+E L + + G + + +
Sbjct: 3 SIIKGRVWKFGNNVDTDAILPARYL--VYTKPEE---LAQFVMTGADPDFPKKVKPGD-- 55
Query: 128 KTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
II+ G NFGCGSSREHAP+ L AG S V+AES+ARIF+RN++ G PL
Sbjct: 56 -----IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVG--LPLIECK 108
Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
+ E+ + GD + + + + N TTG+ K + + + + +++AGG+ Y +K
Sbjct: 109 GISEKVNEGDELEVNLETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKK 162
>sp|Q8RDK1|LEUD_THETN 3-isopropylmalate dehydratase small subunit OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=leuD PE=3 SV=1
Length = 161
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 21/167 (12%)
Query: 78 GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYK---II 134
GDNIDTD IIPA +L S+P E L + + L + E K K K I+
Sbjct: 9 GDNIDTDVIIPARFLN--TSDPKE---LAEHCMEDL----------DREFKNKVKEGDIL 53
Query: 135 IAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECS 194
+ G NFGCGSSREHAP+A+ A+G S ++A+S+ARIF+RN++ G P+ +
Sbjct: 54 VVGENFGCGSSREHAPLAIKASGISCIIAKSFARIFYRNAINIG--LPILESREAVDGIE 111
Query: 195 TGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
GD+V++++ + N T G E+K +P + + +I GG+ Y R+
Sbjct: 112 EGDIVSVDVDNGIIRNVTKGTEFKAQPFPEFIKEIIKYGGLINYVRE 158
>sp|B0TCR3|LEUD_HELMI 3-isopropylmalate dehydratase small subunit OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=leuD PE=3
SV=1
Length = 166
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 15/171 (8%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
F G + G +IDTD IIPA YL N E+L + + ++ +
Sbjct: 3 FTGRVWKFGKDIDTDAIIPARYL-----NTTSPEELAKHCMEDADPSFPQKV-------R 50
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
K II+A NFGCGSSREHAP+A+ AAG V+A+S+ARIFFRN++ G P+
Sbjct: 51 KGDIIVADKNFGCGSSREHAPIAIKAAGVPCVIAKSFARIFFRNAINIG--LPIFECPEA 108
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPI-GDLGPVIDAGGIFAYAR 239
+ GDVV + + N TTG+ Y K + + +I AGG+ Y +
Sbjct: 109 VDGIREGDVVQVNADRGVIFNMTTGQTYTAKALPASMQSIIQAGGLMQYVK 159
>sp|Q18AJ1|LEUD_CLOD6 3-isopropylmalate dehydratase small subunit OS=Clostridium
difficile (strain 630) GN=leuD PE=3 SV=1
Length = 163
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 14/151 (9%)
Query: 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
+G + GDNIDTD IIPA YL + +Y++L ++ + + + ++ K
Sbjct: 4 NGSVFKFGDNIDTDVIIPARYLNIA-----DYKELATHCMEDIDDKFISKV-------KK 51
Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
II+A NFGCGSSREHAP+ + +G S V+A ++ARIFFRNS+ G P+
Sbjct: 52 GDIIVATKNFGCGSSREHAPIVIKESGVSCVIASTFARIFFRNSINIG--LPILECEEAA 109
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKP 221
GD + ++ + + N T GKEYK +P
Sbjct: 110 NNIDEGDNIEVDFSTGVIKNITKGKEYKAEP 140
>sp|O27440|LEUD2_METTH 3-isopropylmalate dehydratase small subunit 2
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=leuD2 PE=3 SV=1
Length = 162
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 17/174 (9%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
G + D++DTD IIP YL + +P EKL + + GL + ++
Sbjct: 1 MKGKVWKFPDDVDTDIIIPGRYLVM--RDP---EKLREHVMEGLDPEFPSKV-------K 48
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
I+AG NFGCGSSREHAP+AL AG +AV+AES+ARIF+RN++ G PL +
Sbjct: 49 PGDFIVAGKNFGCGSSREHAPLALKGAGIAAVIAESFARIFYRNAINVG--IPLLEAPGI 106
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTG 242
E+ + GD + +++ +I E+ K + D + +++ GG+ Y +K G
Sbjct: 107 TEKLNEGDEIEVDLDRGVIIRGDD--EFPFKKLPDFMVEILEKGGLIPYLKKKG 158
>sp|B4U7M0|LEUD_HYDS0 3-isopropylmalate dehydratase small subunit OS=Hydrogenobaculum sp.
(strain Y04AAS1) GN=leuD PE=3 SV=1
Length = 165
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 14/169 (8%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + DNIDTDQIIPA YL S+P E L S+ + + F E++
Sbjct: 5 GKIWKFKDNIDTDQIIPARYLN--TSDPLE---LASHVM---EDSEKPNFAKEHQEGD-- 54
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
II+AG NFG GSSREHAP+A+ AG VVA+S+ARIFFRN++ G P+ +
Sbjct: 55 -IIVAGKNFGSGSSREHAPIAIKYAGVPVVVAKSFARIFFRNAINIG--LPIVECKEAVD 111
Query: 192 ECSTGDVVTIEIAESRLINHTTGKEY-KLKPIGDLGPVIDAGGIFAYAR 239
E GD+ I++ + N T K Y K +L ++ AGG+ YA+
Sbjct: 112 EAEDGDIFEIDLENGIVKNVTKNKTYSSTKFPEELMAILRAGGLMEYAK 160
>sp|C6BSH0|LEUD_DESAD 3-isopropylmalate dehydratase small subunit OS=Desulfovibrio
salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 /
VKM B-1763) GN=leuD PE=3 SV=1
Length = 164
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 15/172 (8%)
Query: 69 TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK 128
+ G Y VG +IDTD IIPA +L V ++PDE LG+ + GL A + R
Sbjct: 2 SIKGTAYRVGAHIDTDAIIPARFL--VTTDPDE---LGANCMEGLEAGWIKRV------- 49
Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
K I++A NFGCGSSREHAP+++ AG VVA+S+ARIF+RN G I L
Sbjct: 50 KKNDIMVADENFGCGSSREHAPISILGAGIPVVVAKSFARIFYRNGFNMGLI--LLEVGD 107
Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
E+ GD + ++ + + N TTG+ P+ + ++D GG+ Y +
Sbjct: 108 DFEKLGDGDQLEVDAEKGEIKNVTTGETITCAPVPPFMKGILDCGGLVEYVK 159
>sp|Q9WYC8|LEUD1_THEMA 3-isopropylmalate dehydratase small subunit 1 OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=leuD1 PE=3 SV=1
Length = 166
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GDNI TD I P Y L + E+L + L + + K
Sbjct: 4 GRVWKFGDNISTDHIAPGRYFHL----RNNLEELAKHVLEDAMEDFAKKV-------QKG 52
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
II+AG NFG GSSREHA + AG S +VA+S+ARIF+RN++ G P+ E + +
Sbjct: 53 DIIVAGKNFGLGSSREHAARIIKIAGVSCIVAKSFARIFYRNAINVG--LPV-IELKEVD 109
Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTG 242
E + GD + I++ L N TTGKEY+ PI L ++ GI Y +K G
Sbjct: 110 EINQGDELEIDLENGVLKNLTTGKEYRFTPIPKFLLEILKEDGIVNYLKKHG 161
>sp|B8J4G0|LEUD_DESDA 3-isopropylmalate dehydratase small subunit OS=Desulfovibrio
desulfuricans (strain ATCC 27774 / DSM 6949) GN=leuD
PE=3 SV=1
Length = 165
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 69 TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK 128
+ G + VG++IDTD IIPA +L + +KLG + GL ++ +R +
Sbjct: 2 NYKGKAHKVGEHIDTDAIIPARFLVTT-----DAQKLGENCMSGLEPSWASRVAPGD--- 53
Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
I++AG NFGCGSSREHAP+A+ AG V+ S+ARIF+RN+ G + L
Sbjct: 54 ----IMVAGRNFGCGSSREHAPIAILGAGMPVVIGHSFARIFYRNAFNMGLL--LMEVGD 107
Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPI-GDLGPVIDAGGIFAYARK 240
++ S GD + I+ + + N TTG E P+ + ++ GG+ Y ++
Sbjct: 108 EVDKISDGDALEIDASTGAIRNLTTGAEITCPPLPASMAAILAKGGLVGYVKE 160
>sp|O28513|LEUD2_ARCFU 3-isopropylmalate dehydratase small subunit 2 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=leuD2 PE=3 SV=1
Length = 165
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 18/175 (10%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GD+I TD I P Y L + P+ L + + + +F +
Sbjct: 5 GRAWKFGDDISTDHITPGRYYHLRSNMPE----LAKHVMEDADPDFMKKFRPGD------ 54
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG-EIYPLDSEARLC 190
I+AG NFG GSSREHAP+AL AG SAV+A+S+ARIF+RN++ G + D+++
Sbjct: 55 -FIVAGKNFGMGSSREHAPLALKIAGVSAVIAKSFARIFYRNAINVGLPVLIADTDS--- 110
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTGMI 244
+GD + +++ + ++N T G E ++KPI + + ++ GG+ +Y +K G I
Sbjct: 111 --IDSGDELEVDLGKGLVVNRTKGIEIRVKPIPEVMLKILHEGGLVSYVKKHGDI 163
>sp|A1VAE6|LEUD_DESVV 3-isopropylmalate dehydratase small subunit OS=Desulfovibrio
vulgaris subsp. vulgaris (strain DP4) GN=leuD PE=3 SV=1
Length = 167
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
+ G + VGD+IDTD IIPA +L + +KLG + GL + R
Sbjct: 3 YAGTAHKVGDHIDTDAIIPARFLVTT-----DAQKLGENCMEGLEHGWVARV-------K 50
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
I++ G NFGCGSSREHAP+A+ AG VVA S+ARIF+RN G + L
Sbjct: 51 SGDIMVGGRNFGCGSSREHAPIAILGAGMPVVVAHSFARIFYRNGFNMGLL--LLEVGDD 108
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPI-GDLGPVIDAGGIFAYAR 239
++ + GD + ++ A + N TTG P+ + ++D GG+ Y R
Sbjct: 109 VDKIADGDDIEVDAASGVITNRTTGATITCAPVPQSMRELLDTGGLVPYVR 159
>sp|Q726X3|LEUD_DESVH 3-isopropylmalate dehydratase small subunit OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=leuD PE=3 SV=1
Length = 167
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
+ G + VGD+IDTD IIPA +L + +KLG + GL + R
Sbjct: 3 YAGTAHKVGDHIDTDAIIPARFLVTT-----DAQKLGENCMEGLEHGWVARV-------K 50
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
I++ G NFGCGSSREHAP+A+ AG VVA S+ARIF+RN G + L
Sbjct: 51 SGDIMVGGRNFGCGSSREHAPIAILGAGMPVVVAHSFARIFYRNGFNMGLL--LLEVGDD 108
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPI-GDLGPVIDAGGIFAYAR 239
++ + GD + ++ A + N TTG P+ + ++D GG+ Y R
Sbjct: 109 VDKIADGDDIEVDAASGVITNRTTGATITCAPVPQSMRELLDTGGLVPYVR 159
>sp|B2UYT4|LEUD_CLOBA 3-isopropylmalate dehydratase small subunit OS=Clostridium
botulinum (strain Alaska E43 / Type E3) GN=leuD PE=3
SV=1
Length = 161
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 69 TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK 128
+ G + GDN+DTD IIPA YL N +++L S+ + + + D +
Sbjct: 2 SIKGRVFKYGDNVDTDVIIPARYL-----NTSNHKELASHCMEDIDKDFVNNVKDGD--- 53
Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
II+A NFGCGSSREHAP+A+ A+G S V+A ++ARIF+RNS+ G P+
Sbjct: 54 ----IIVANKNFGCGSSREHAPIAIKASGISCVIASTFARIFYRNSINIG--LPILECDE 107
Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+ + GD + ++ + + N + ++YK + + + +ID G+ Y R
Sbjct: 108 AVKNINDGDELEVDFSTGIIKNLSKNEKYKGEAFPEFMQKIIDNDGLIGYIR 159
>sp|B2TIR0|LEUD_CLOBB 3-isopropylmalate dehydratase small subunit OS=Clostridium
botulinum (strain Eklund 17B / Type B) GN=leuD PE=3 SV=1
Length = 161
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 15/169 (8%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GDN+DTD IIPA YL N +++L S+ + + + D +
Sbjct: 5 GRVFKYGDNVDTDVIIPARYL-----NTSNHKELASHCMEDIDKEFVNNVKDGD------ 53
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
II+A NFGCGSSREHAP+A+ AAG S V+A ++ARIF+RNS+ G P+ +
Sbjct: 54 -IIVANKNFGCGSSREHAPIAIKAAGISCVIASTFARIFYRNSINIG--LPILECDEAVK 110
Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+ GD + ++ + + N + ++Y+ + + + +ID G+ Y R
Sbjct: 111 NINHGDELEVDFSTGIIKNLSKNEQYQGEAFPEFMQKIIDNDGLIGYIR 159
>sp|B8CX23|LEUD_HALOH 3-isopropylmalate dehydratase small subunit OS=Halothermothrix
orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuD PE=3
SV=1
Length = 165
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 81/139 (58%), Gaps = 14/139 (10%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
G GDN+DTD IIPA YL SNPDE L + + + + ++ D +
Sbjct: 3 LKGRVLKYGDNVDTDVIIPARYLNT--SNPDE---LARHCMEDIDPDFASKVKDGD---- 53
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
II+AG NFG GSSREHAP+A+ +AG S V+AES+ARIF+RN++ G P+ +
Sbjct: 54 ---IIVAGKNFGSGSSREHAPLAIKSAGVSCVIAESFARIFYRNAINIG--LPILECKDV 108
Query: 190 CEECSTGDVVTIEIAESRL 208
+ GD+V +++ E ++
Sbjct: 109 TDRIEEGDLVEVDLNEGKI 127
>sp|B1YDA5|LEUD_PYRNV 3-isopropylmalate dehydratase small subunit OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=leuD PE=3 SV=1
Length = 162
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 94/173 (54%), Gaps = 16/173 (9%)
Query: 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
G V GD IDTD IIPA+YL V ++P LG +A+ L + K K
Sbjct: 4 RGKAIVYGDKIDTDVIIPAKYL--VYTDP---AVLGQHAMEPLDPEFPK--------KAK 50
Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
+++AG FG GSSRE A +AL AG AVVAES+ARIFFRN++ G P+ +
Sbjct: 51 GAVLVAGRAFGMGSSREQAAIALKGAGVLAVVAESFARIFFRNAINVG--LPVLQVPDVT 108
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYARKTG 242
+ GD + ++I L+N TTG+ + KP+ L ++ AGG+ + + G
Sbjct: 109 KRVREGDELEVDIEGGYLLNLTTGERLEGKPLRGLPLAILKAGGLVNFLKTAG 161
>sp|Q7VH32|LEUD_HELHP 3-isopropylmalate dehydratase small subunit OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=leuD PE=3 SV=1
Length = 165
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 96/171 (56%), Gaps = 15/171 (8%)
Query: 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
G + GDN+DTD IIPA YL N ++++L ++ + + + + + E +
Sbjct: 4 QGFVHKYGDNVDTDVIIPARYL-----NTADHKELANHCMEDIDKDFVAK-VKEGD---- 53
Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
I++ G NFGCGSSREHAP+A+ A+G S ++A+S+ARIF+RN++ G + ++SE +
Sbjct: 54 --IMVGGWNFGCGSSREHAPIAIKASGISCIIAKSFARIFYRNAINIG-LAIIESE-EVA 109
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
+ GD V I+ + + N +++ P + +I+A G + K
Sbjct: 110 QSLENGDEVAIDFDKGIITNCKNNQQFSTTPFPPFIQEIINANGYLNWISK 160
>sp|Q58667|HACB_METJA Homoaconitase small subunit OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=hacB PE=1 SV=1
Length = 170
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
G + GD++DTD IIP YL D YE L S+ + G+ + + + +
Sbjct: 3 IKGRAHKFGDDVDTDAIIPGPYL----RTTDPYE-LASHCMAGIDENFPKKVKEGD---- 53
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
+I+AG NFGCGSSRE A +A+ G AV+A+S+ARIF+RN++ G I P+ +
Sbjct: 54 ---VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLI-PIIANT-- 107
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLK-PIGDLGPVIDAGGIFAYARKTGMIASR 247
+E GD+V I++ + ++ K K + P G ++ AGG+ Y +K +I S+
Sbjct: 108 -DEIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLEREILAAGGLVNYLKKRKLIQSK 165
>sp|A9KT78|LEUD_CLOPH 3-isopropylmalate dehydratase small subunit OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=leuD PE=3 SV=1
Length = 165
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 15/168 (8%)
Query: 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
HG+ + GDN+DTD IIPA YL S+P E L + + + R
Sbjct: 4 HGIVHKYGDNVDTDVIIPARYLN--SSDPKE---LAKKCMEDIDKEFVNRV-------NL 51
Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
I++A NFGCGSSREHAP+A+ A+G S V+AE++ARIF+RN++ G P+
Sbjct: 52 GDIMVANKNFGCGSSREHAPIAIKASGISCVIAETFARIFYRNAINIG--LPIIECKEAA 109
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAY 237
+ G+ V I+ + N T G Y+ + + + ++ A G+ Y
Sbjct: 110 RDIDAGNEVEIDFDSGIITNLTKGTSYQGQAFPEFMQKIMKADGLINY 157
>sp|A1RVI0|LEUD_PYRIL 3-isopropylmalate dehydratase small subunit OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=leuD PE=3
SV=1
Length = 161
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 91/172 (52%), Gaps = 18/172 (10%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFID-ENETK 128
G V GD IDTD IIPA+YL N LG +A+ ID E K
Sbjct: 3 IRGRAIVYGDKIDTDVIIPAKYLVYTDPN-----ILGQHAM---------EPIDPEFPKK 48
Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
K I++AG FG GSSRE A +AL AG AVVAES+ARIFFRN++ G P+
Sbjct: 49 AKGAILVAGRAFGMGSSREQAAIALKGAGVLAVVAESFARIFFRNAINIG--LPVLQVPE 106
Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYAR 239
+ ++ G+ + ++I IN TG++ + KPI L ++ AGG+ Y +
Sbjct: 107 ITKKVKEGEELEVDIENGYCINLATGEKIEGKPIRGLPLAILKAGGLTNYLK 158
>sp|Q8TW31|LEUD2_METKA 3-isopropylmalate dehydratase small subunit 2 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=leuD2 PE=3 SV=1
Length = 168
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 15/151 (9%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
+ G +V GD++DTDQIIP L V Y++LG YA+ G + E
Sbjct: 3 WSGRAHVFGDDVDTDQIIPGRCLRRV-----SYDELGRYAMTGADPEFP-------EKVR 50
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
+ +I+AG NFGCGSSRE A +AL AG + VVA S+ARIF+RN++ G + +++E
Sbjct: 51 EGDVIVAGKNFGCGSSREQAVMALQQAGVACVVARSFARIFYRNAINRG-LPTVEAEEDP 109
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLK 220
E G+ VT+++ E L+ +E L+
Sbjct: 110 TEVVEDGNRVTVDLDE--LVLRAGSEEVPLR 138
>sp|C0R087|LEUD_BRAHW 3-isopropylmalate dehydratase small subunit OS=Brachyspira
hyodysenteriae (strain ATCC 49526 / WA1) GN=leuD PE=3
SV=1
Length = 163
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 17/166 (10%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GDN+DTD IIPA YL N +++L ++ + + + + KT
Sbjct: 5 GFVHKYGDNVDTDVIIPARYL-----NTANHKELAAHCMEDIDKDFVKK------VKTG- 52
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG-EIYPLDSEARLC 190
I++ G NFGCGSSREHAP+A+ +G S V+A S+ARIF+RNS+ G I D ++
Sbjct: 53 DIMVGGDNFGCGSSREHAPIAIKESGISCVIASSFARIFYRNSINIGLAILECDEASK-- 110
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIF 235
+ S D V ++ + N T + YK +P + + +I++ G+
Sbjct: 111 -KISDNDEVEVDFDNGLIKNITKNETYKAEPFPEFIKKIINSNGLL 155
>sp|Q8ZW36|LEUD_PYRAE 3-isopropylmalate dehydratase small subunit OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=leuD PE=3 SV=1
Length = 161
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 93/173 (53%), Gaps = 16/173 (9%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
G V GD IDTD IIPA+YL V ++P LG +A+ L + K
Sbjct: 3 IRGRALVYGDKIDTDVIIPAKYL--VYTDP---ALLGQHAMEPLDPEFPK--------KA 49
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
K +++AG FG GSSRE A +AL AG AVVAES+ARIFFRN++ G P+ +
Sbjct: 50 KGAVLVAGRAFGMGSSREQAALALKGAGVLAVVAESFARIFFRNAINVG--LPVLQAPGI 107
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYARKT 241
E+ GD V +++ + N TTG+ KP+ L ++ AGG+ Y + +
Sbjct: 108 REKVKDGDEVELDVEGGIVRNITTGEVIVGKPLRGLPLEILKAGGLLNYLKNS 160
>sp|Q2LWJ1|LEUD_SYNAS 3-isopropylmalate dehydratase small subunit OS=Syntrophus
aciditrophicus (strain SB) GN=leuD PE=3 SV=1
Length = 164
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
F G + GDNIDTD IIPA YL N + + L ++ + + + +
Sbjct: 3 FTGKVWKFGDNIDTDAIIPARYL-----NTFDPQALAAHCMEDADPDFPKKV-------S 50
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
II+AG NFGCGSSREHAP+A+ AAG S V+A+S+ARIF+RN+ G P+ A L
Sbjct: 51 AGDIIVAGENFGCGSSREHAPIAIKAAGVSCVIAKSFARIFYRNAFNMG--LPIFESAEL 108
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAY-ARKT 241
+ G +T++ ++ ++PI + +I GG+ + ARK
Sbjct: 109 FDRVDEGQTITVDGDSGVILLEGAQTPLSIQPIPPFMQELIADGGLMKHLARKN 162
>sp|A6LPX5|LEUD_CLOB8 3-isopropylmalate dehydratase small subunit OS=Clostridium
beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=leuD
PE=3 SV=1
Length = 161
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 69 TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK 128
+ G + GDN+DTD IIPA YL +N +L ++ + + +
Sbjct: 2 SVKGKVFKYGDNVDTDVIIPARYLNTSDAN-----ELAAHCMEDIDVDFVKNV------- 49
Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
II+A NFGCGSSREHAP+A+ AG S V+A ++ARIF+RN++ G P+
Sbjct: 50 KSGDIIVANKNFGCGSSREHAPLAIKTAGVSCVIASTFARIFYRNAINIG--LPILECDE 107
Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
+ GD + ++ + + N T +EY+ + + + +ID G+ Y R
Sbjct: 108 AVKNIDAGDELEVDFSTGLIKNLTKSQEYQGEAFPEFMQKIIDNDGLIGYIR 159
>sp|Q8TRF7|LEUD3_METAC 3-isopropylmalate dehydratase small subunit 3 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=leuD3 PE=3 SV=1
Length = 164
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 19/171 (11%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GD+I+TD IIP +YL + + G++A+ G+ +T +
Sbjct: 7 GRVWKFGDDINTDAIIPGKYL-----RTRDMQIFGTHAMEGIDPEFTKK-------AKPG 54
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
II+AG NFGCGSSRE AP+AL +G + +VA+S+ARIFFRN++ G PL EA +
Sbjct: 55 DIIVAGTNFGCGSSREQAPLALKHSGIACIVAKSFARIFFRNAINIG--LPL-MEADV-- 109
Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKT 241
EC GD + +++ + ++ G +K + D L +++ GG+ A+ +K
Sbjct: 110 ECQEGDEIKVDLFKGEVLVPEKGI-FKGNKLPDFLLDILNDGGLVAHRKKV 159
>sp|A3MWK3|LEUD_PYRCJ 3-isopropylmalate dehydratase small subunit OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=leuD PE=3 SV=1
Length = 161
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 18/172 (10%)
Query: 70 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFID-ENETK 128
G V GD IDTD IIPA+YL V ++P A++G + ID E K
Sbjct: 3 IRGRAIVYGDKIDTDVIIPAKYL--VYTDP---------AILG---QHAMEPIDPEFPKK 48
Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
K I++AG FG GSSRE A +AL AG AVVAES+ARIF+RN++ G P+
Sbjct: 49 AKGAILVAGRAFGMGSSREQAAIALKGAGVLAVVAESFARIFYRNAINVG--LPVLQAPG 106
Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYAR 239
+ + GD + +++ + N TTG+ + KP+ L ++ AGG+ Y +
Sbjct: 107 VRAKVREGDELEVDLTGGVVRNLTTGEAIQGKPLAGLPLEILKAGGLLQYLK 158
>sp|Q8TJM9|LEUD1_METAC 3-isopropylmalate dehydratase small subunit 1 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=leuD1 PE=3 SV=1
Length = 166
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 17/137 (12%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GD+IDTD IIP +YL + + ++A+ G+ +T +
Sbjct: 8 GRVWKFGDDIDTDVIIPGKYL-----RTKDMQIFAAHAMEGIAPEFTKK-------AKPG 55
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
II+AG NFGCGSSRE AP+A+ AG + VVA+S+ARIFFRN++ G PL EA +
Sbjct: 56 DIIVAGENFGCGSSREQAPLAIKHAGIACVVAKSFARIFFRNAINVG--LPL-MEADI-- 110
Query: 192 ECSTGDVVTIEIAESRL 208
EC GD + +++ + +
Sbjct: 111 ECQEGDEIEVDLLKGEV 127
>sp|Q0QLE1|DMDB_EUBBA 2,3-dimethylmalate dehydratase small subunit OS=Eubacterium barkeri
GN=DmdB PE=1 SV=1
Length = 163
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + GDN+DTD IIPA +L S+P E L ++ + + A ++++
Sbjct: 5 GSVFRYGDNVDTDVIIPARFLN--TSDPLE---LAAHCMEDIDADFSSKV-------NAG 52
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
II+A NFGCGSSREHAP+++ A+G S V+A S+ARIF+RN++ G P+
Sbjct: 53 DIIVADDNFGCGSSREHAPISIKASGVSCVIANSFARIFYRNAINIG--LPILECPEAVA 110
Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKT 241
GD V ++ + + T G+ ++ + + + +I AGG+ Y T
Sbjct: 111 VIEAGDEVEVDFDSGVITDVTKGQSFQGQAFPEFMQTLIAAGGLVNYINAT 161
>sp|Q8PZ49|LEUD1_METMA 3-isopropylmalate dehydratase small subunit 1 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=leuD1 PE=3 SV=1
Length = 169
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 21/172 (12%)
Query: 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
G + G++IDTD IIP +YL + + ++A+ G+ ++ +
Sbjct: 8 GRVWKFGNDIDTDVIIPGKYL-----RTKDMQVFAAHAMEGIDPGFSKK-------AKPG 55
Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
II+AG NFGCGSSRE AP+AL AG + +VA+S+ARIFFRN++ G PL EA +
Sbjct: 56 DIIVAGDNFGCGSSREQAPLALKHAGIACIVAKSFARIFFRNAINIG--LPL-MEADI-- 110
Query: 192 ECSTGDVVTIEIAESRLINHTTGKE-YKLKPIGD-LGPVIDAGGIFAYARKT 241
EC GD + +++ + + +GK ++ + D L ++ GG+ A+ +K
Sbjct: 111 ECEEGDQIEVDLLKGEV--KVSGKGVFRGNKLPDFLLDMLTDGGLVAHRKKV 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,297,076
Number of Sequences: 539616
Number of extensions: 3907142
Number of successful extensions: 10485
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9290
Number of HSP's gapped (non-prelim): 647
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)