Query 025777
Match_columns 248
No_of_seqs 138 out of 1223
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 09:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00072 3-isopropylmalate iso 100.0 1.7E-65 3.7E-70 457.2 19.7 241 4-247 5-246 (246)
2 PRK00439 leuD 3-isopropylmalat 100.0 2.4E-54 5.3E-59 366.7 14.5 161 71-245 1-162 (163)
3 TIGR02084 leud 3-isopropylmala 100.0 1.7E-54 3.6E-59 365.4 12.3 155 72-240 1-156 (156)
4 PRK14023 homoaconitate hydrata 100.0 5.5E-54 1.2E-58 365.4 13.7 161 72-247 2-163 (166)
5 TIGR02087 LEUD_arch 3-isopropy 100.0 1.4E-52 3.1E-57 352.9 12.4 153 72-241 1-154 (154)
6 COG0066 LeuD 3-isopropylmalate 100.0 1.7E-51 3.7E-56 353.9 13.3 166 65-242 2-179 (191)
7 TIGR00171 leuD 3-isopropylmala 100.0 1.5E-46 3.3E-51 325.2 13.2 156 65-232 2-174 (188)
8 PRK01641 leuD isopropylmalate 100.0 1.4E-45 3E-50 322.0 14.1 155 65-232 2-172 (200)
9 TIGR00139 h_aconitase homoacon 100.0 5.9E-44 1.3E-48 357.3 15.2 163 66-241 527-711 (712)
10 PRK07229 aconitate hydratase; 100.0 4.1E-42 8.9E-47 342.9 15.7 166 67-242 466-644 (646)
11 TIGR01342 acon_putative aconit 100.0 3.2E-42 6.8E-47 343.9 14.1 168 68-241 469-651 (658)
12 cd01579 AcnA_Bact_Swivel Bacte 100.0 3E-42 6.5E-47 280.0 7.9 118 76-203 1-121 (121)
13 PRK12881 acnA aconitate hydrat 100.0 1.5E-40 3.3E-45 337.9 13.8 207 30-241 618-886 (889)
14 PRK09238 bifunctional aconitat 100.0 1.6E-39 3.4E-44 328.1 14.6 166 64-243 160-342 (835)
15 PLN00070 aconitate hydratase 100.0 1.5E-38 3.2E-43 324.0 14.4 207 30-241 666-932 (936)
16 PTZ00092 aconitate hydratase-l 100.0 2.6E-38 5.6E-43 321.5 15.2 207 30-241 631-894 (898)
17 cd01674 Homoaconitase_Swivel H 100.0 8.5E-39 1.8E-43 260.7 8.7 99 77-186 2-100 (129)
18 TIGR00117 acnB aconitate hydra 100.0 3.2E-38 7E-43 318.2 13.2 165 64-243 161-343 (844)
19 TIGR01341 aconitase_1 aconitat 100.0 9.3E-38 2E-42 316.9 15.2 207 30-241 607-874 (876)
20 KOG0454 3-isopropylmalate dehy 100.0 8.4E-38 1.8E-42 294.8 9.7 240 9-248 216-468 (502)
21 PRK09277 aconitate hydratase; 100.0 4.5E-37 9.9E-42 312.2 15.0 207 30-241 617-884 (888)
22 cd01577 IPMI_Swivel Aconatase- 100.0 4.7E-37 1E-41 238.2 6.6 89 76-203 1-91 (91)
23 PRK11413 putative hydratase; P 100.0 1.1E-35 2.4E-40 299.3 14.1 169 65-240 532-750 (751)
24 TIGR01340 aconitase_mito aconi 100.0 6.1E-36 1.3E-40 301.6 9.9 190 36-238 520-745 (745)
25 TIGR02333 2met_isocit_dHY 2-me 100.0 3.2E-35 6.9E-40 297.6 14.5 202 32-241 591-855 (858)
26 cd01578 AcnA_Mitochon_Swivel M 100.0 9.9E-36 2.1E-40 248.4 8.6 124 76-204 1-144 (149)
27 cd01576 AcnB_Swivel Aconitase 100.0 1.6E-35 3.5E-40 243.2 7.7 112 75-202 1-130 (131)
28 KOG0452 RNA-binding translatio 100.0 1.4E-34 3.1E-39 280.6 5.9 207 30-240 627-889 (892)
29 COG1048 AcnA Aconitase A [Ener 100.0 2E-33 4.3E-38 282.6 13.0 205 30-242 598-859 (861)
30 cd00404 Aconitase_swivel Aconi 100.0 1.4E-33 3.1E-38 217.5 7.0 86 76-202 1-87 (88)
31 cd01580 AcnA_IRP_Swivel Aconit 100.0 2.3E-33 5E-38 237.9 6.8 110 76-187 1-152 (171)
32 PF00694 Aconitase_C: Aconitas 100.0 9.7E-33 2.1E-37 227.0 7.2 115 65-186 2-129 (131)
33 PLN00094 aconitate hydratase 2 100.0 2.9E-30 6.4E-35 261.1 12.7 171 64-243 229-415 (938)
34 PRK14812 hypothetical protein; 99.9 5.4E-27 1.2E-31 190.1 8.0 88 142-232 2-92 (119)
35 KOG0453 Aconitase/homoaconitas 99.9 5.7E-24 1.2E-28 208.0 12.2 175 62-241 563-775 (778)
36 PF06434 Aconitase_2_N: Aconit 99.7 1.1E-16 2.4E-21 138.7 7.0 159 73-242 2-174 (204)
37 COG1049 AcnB Aconitase B [Ener 99.2 2.2E-11 4.7E-16 120.5 6.8 169 64-243 160-344 (852)
38 PRK05849 hypothetical protein; 47.0 1E+02 0.0023 32.7 8.8 95 66-209 687-781 (783)
39 PRK08296 hypothetical protein; 44.6 41 0.00089 34.6 5.3 47 142-210 555-601 (603)
40 PF00391 PEP-utilizers: PEP-ut 41.5 60 0.0013 23.9 4.6 41 142-204 38-78 (80)
41 PF06574 FAD_syn: FAD syntheta 41.4 24 0.00052 29.7 2.6 36 131-166 107-146 (157)
42 PRK06241 phosphoenolpyruvate s 37.5 61 0.0013 34.6 5.5 48 142-211 822-869 (871)
43 PF02579 Nitro_FeMo-Co: Dinitr 34.8 48 0.001 24.3 3.1 43 140-184 37-79 (94)
44 PRK03955 hypothetical protein; 34.8 1.1E+02 0.0023 25.5 5.4 48 160-210 81-128 (131)
45 PRK05865 hypothetical protein; 29.0 2E+02 0.0043 31.0 7.6 48 142-211 790-837 (854)
46 COG0196 RibF FAD synthase [Coe 28.0 55 0.0012 30.8 2.9 47 132-178 117-173 (304)
47 cd00562 NifX_NifB This CD repr 26.0 76 0.0016 23.5 2.9 38 146-184 50-87 (102)
48 cd00851 MTH1175 This uncharact 23.7 1E+02 0.0022 22.9 3.2 37 147-184 53-89 (103)
49 PRK11177 phosphoenolpyruvate-p 22.3 1.4E+02 0.003 30.5 4.8 24 189-212 208-231 (575)
50 TIGR01417 PTS_I_fam phosphoeno 20.3 2.2E+02 0.0048 29.0 5.8 22 190-211 208-229 (565)
51 PF10910 DUF2744: Protein of u 20.1 47 0.001 27.5 0.8 34 145-178 13-50 (125)
No 1
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=1.7e-65 Score=457.20 Aligned_cols=241 Identities=65% Similarity=1.021 Sum_probs=206.0
Q ss_pred ccccccccccccccCCCCCCCCcccCCcccccCCCC-CCCccccceeeccCCCCccCccCCCCCCceEEeEEEecCCCCC
Q 025777 4 ASSISFGANTTFTSSPIPKTKPLFIPHSLKFTTGNG-RAAVTFQRAVSVIPKATSADSRATKEPTATFHGLCYVVGDNID 82 (248)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~v~~lgDnId 82 (248)
.+..+++++..+++++++++..+.+ ++|+|+...+ |+++++.+... +-.+..+++.+...++.++|+||+++||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Grv~k~gDNId 81 (246)
T PLN00072 5 QQSANPTLAPSLASTNKSSSSATPR-PFLRFSSTSSIFPFKPLTTSSG--TSSPTISDSAESTSSTTFHGLCFVVGDNID 81 (246)
T ss_pred ccccccccCCCcccCCCcccccCCc-hhhcccccccccccccccCCCc--cccccccccCCCCCCCeEEEeEEEeCCCcc
Confidence 4556788999998888888777775 9999976442 23333333222 111222444555668899999999999999
Q ss_pred ccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHhcCccEEE
Q 025777 83 TDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVV 162 (248)
Q Consensus 83 TD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVI 162 (248)
||+|+|++||....+++.++++|++|+|++++++|.+|++++|+.++++.|||||+|||||||||||+|||+++||+|||
T Consensus 82 TD~IiPa~~l~~~~sn~~~~~~l~~~~F~~l~~~~~~r~v~~Gd~~~~~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVI 161 (246)
T PLN00072 82 TDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPAFYKTRFVEPGEMKTKYSIIIGGENFGCGSSREHAPVALGAAGAKAVV 161 (246)
T ss_pred hhhcccHHHhccccccCCCHHHHHHhhhccCCcchhhcccCCCCCCCCceEEEecCcccCCCcHHHHHHHHHHcCCCEEE
Confidence 99999999998765655678999999999999888899999998778889999999999999999999999999999999
Q ss_pred echhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCChHHHHHhCCHHHHHHHhC
Q 025777 163 AESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTG 242 (248)
Q Consensus 163 AeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~~~~ii~aGGll~y~kk~g 242 (248)
|+||+|||||||+|+||++|++.++++++.+++||+|+||+++++|+++++|++|.+++.+++++||++|||++|+|++|
T Consensus 162 A~SFArIF~rN~iN~GLllpi~~~~~~~e~i~~Gd~i~VDl~~~~v~n~t~g~~~~~~p~~~~~~Il~aGGl~~y~r~~g 241 (246)
T PLN00072 162 AESYARIFFRNSVATGEVYPLESEVRICEECKTGDVVTVELGNSVLINHTTGKEYKLKPIGDAGPVIDAGGIFAYARKTG 241 (246)
T ss_pred ECcHHHHHHHHHHhCCcceeecccHHHHHhcCCCCEEEEECCCCEEEECCCCeEEEecCCHHHHHHHHcCCHHHHHHhhC
Confidence 99999999999999997688887778899999999999999999999999999999999988899999999999999999
Q ss_pred CCcCC
Q 025777 243 MIASR 247 (248)
Q Consensus 243 ~~~~~ 247 (248)
|||++
T Consensus 242 ~~~~~ 246 (246)
T PLN00072 242 MIPSA 246 (246)
T ss_pred CCCCC
Confidence 99985
No 2
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=2.4e-54 Score=366.72 Aligned_cols=161 Identities=43% Similarity=0.776 Sum_probs=146.2
Q ss_pred EeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHh
Q 025777 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAP 150 (248)
Q Consensus 71 ~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa 150 (248)
+||||++|||||||+|+|++||+.. +.++|++|+|++++|+|..+ .++| +|||||+|||||||||||+
T Consensus 1 ~grv~~~gdnIdTD~I~P~~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~IiVaG~NfG~GSSRE~A~ 68 (163)
T PRK00439 1 KGRVWKFGDNIDTDVIIPARYLNTS-----DPQELAKHCMEDLDPEFAKK-VKPG------DIIVAGKNFGCGSSREHAP 68 (163)
T ss_pred CCeEEEeCCCCchhhCChHHHhCCC-----CHHHHHHHHhccCCcchHhh-cCCc------eEEEeCCcccCCccHHHHH
Confidence 4899999999999999999999763 47899999999999999544 4455 7999999999999999999
Q ss_pred hhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hHHHH
Q 025777 151 VALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVI 229 (248)
Q Consensus 151 ~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~~ii 229 (248)
|||+++||+||||+||+|||+|||+|+| +||++.+ .+++.+++||+|+||+++++|++.++|++|+|+++++ +++++
T Consensus 69 ~al~~~Gi~aVIA~SFa~If~rN~~n~G-ll~i~~~-~~~~~l~~gd~i~idl~~~~v~~~~~g~~~~f~~l~~~~~~il 146 (163)
T PRK00439 69 IALKAAGVSAVIAKSFARIFYRNAINIG-LPVLECD-EAVDKIEDGDEVEVDLETGVITNLTTGEEYKFKPIPEFMLEIL 146 (163)
T ss_pred HHHHHHCCCeEEEehHHHHHHhhHHhcC-CCeEEch-hHHHhcCCCCEEEEECCCCEEEeCCCCeEEEEeeCCHHHHHHH
Confidence 9999999999999999999999999999 6888764 3478899999999999999998877799999988777 79999
Q ss_pred HhCCHHHHHHHhCCCc
Q 025777 230 DAGGIFAYARKTGMIA 245 (248)
Q Consensus 230 ~aGGll~y~kk~g~~~ 245 (248)
++||++||++++|++|
T Consensus 147 ~aGGl~~~~~~~~~~~ 162 (163)
T PRK00439 147 KAGGLIEYLKKKGRFP 162 (163)
T ss_pred HcCCHHHHHHHhcccC
Confidence 9999999999999886
No 3
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=1.7e-54 Score=365.36 Aligned_cols=155 Identities=42% Similarity=0.764 Sum_probs=142.4
Q ss_pred eEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhh
Q 025777 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPV 151 (248)
Q Consensus 72 G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~ 151 (248)
||||++|||||||+|+|++||... +++.|++|+|++++|+|..+ .++| +|||||+|||||||||||+|
T Consensus 1 grv~~~gdnIdTD~I~P~~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~iiVaG~NFG~GSSRE~A~~ 68 (156)
T TIGR02084 1 GKVHKYGDNVDTDVIIPARYLNTS-----DPKELAKHCMEDLDKDFVKK-VKEG------DIIVAGENFGCGSSREHAPI 68 (156)
T ss_pred CceEEcCCCccHhhccHHHHcCcC-----CHHHHHhhhhccCChhHHhh-cCCC------CEEEccCcccCCCcHHHHHH
Confidence 799999999999999999999743 47899999999999999544 4555 79999999999999999999
Q ss_pred hHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hHHHHH
Q 025777 152 ALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVID 230 (248)
Q Consensus 152 al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~~ii~ 230 (248)
+|+++||+||||+||+|||+|||+|+| ||+..++++++.+++||+|+||+++++|++.++|++|.+++.++ ++++++
T Consensus 69 al~~~Gi~aVIA~SFarIf~rN~iN~G--Lp~~~~~~~~~~l~~gd~i~idl~~~~v~~~~~g~~~~~~~~~~~~~~il~ 146 (156)
T TIGR02084 69 AIKASGISCVIAKSFARIFYRNAINIG--LPIVESEEAVDEIEEGDEVEVDLEKGIIKNLTKGKEYKATPFPEFLQKIMK 146 (156)
T ss_pred HHHHhCCCEEEEehHHHHHHhhhhhCC--CCeecCHHHHHHhCCCCEEEEECCCCEEEEecCCEEEEeecCCHHHHHHHH
Confidence 999999999999999999999999999 36777888899999999999999999999888899999998887 799999
Q ss_pred hCCHHHHHHH
Q 025777 231 AGGIFAYARK 240 (248)
Q Consensus 231 aGGll~y~kk 240 (248)
+|||++|+|+
T Consensus 147 ~GGl~~~~~~ 156 (156)
T TIGR02084 147 AGGLLNYVKK 156 (156)
T ss_pred cCCHHHHhhC
Confidence 9999999985
No 4
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=5.5e-54 Score=365.45 Aligned_cols=161 Identities=35% Similarity=0.646 Sum_probs=146.2
Q ss_pred eEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhh
Q 025777 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPV 151 (248)
Q Consensus 72 G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~ 151 (248)
||||++|||||||+|+|++||+... +.++|++|+|++++|+|..+ +++| +|||||+|||||||||||+|
T Consensus 2 grv~~~gdnIdTD~IiPa~~l~~~~----~~~~l~~~~f~~~~p~f~~~-~~~g------~IIVaG~NFG~GSSREhA~~ 70 (166)
T PRK14023 2 ARVWKFGDNINTDDILPGKYAPFMV----GEDRFHNYAFAHLRPEFAST-VRPG------DILVAGRNFGLGSSREYAPE 70 (166)
T ss_pred CceEEcCCCcchhhcchHHHhccCC----CHHHHHhhhccCCChhhHhh-cCCC------CEEEccCcccCCccHHHHHH
Confidence 8999999999999999999987642 36899999999999999543 4455 79999999999999999999
Q ss_pred hHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hHHHHH
Q 025777 152 ALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVID 230 (248)
Q Consensus 152 al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~~ii~ 230 (248)
|++++||++|||+||+|||+|||+|+| ++|++ ++++++.+++||+|+||++.+++++ +|++|++.+.++ ++++++
T Consensus 71 al~~~Gi~aVIA~SFa~If~rN~~n~G-ll~~~-~~~~~~~l~~gd~i~vDl~~~~v~~--~g~~~~~~~~~~~~~~il~ 146 (166)
T PRK14023 71 ALKMLGIGAIIAKSYARIFYRNLVNLG-IPPFE-SEEVVDALEDGDEVELDLETGVLTR--GGETFQLRPPPEFLLEALK 146 (166)
T ss_pred HHHHHCCCEEEEehHHHHHHhhhhhcC-CCccC-CHHHHHHhCCCCEEEEECCCCEEEE--CCEEEEEeeCCHHHHHHHH
Confidence 999999999999999999999999999 67776 5677888999999999999999986 588999999887 799999
Q ss_pred hCCHHHHHHHhCCCcCC
Q 025777 231 AGGIFAYARKTGMIASR 247 (248)
Q Consensus 231 aGGll~y~kk~g~~~~~ 247 (248)
+|||++|+|++|++|.+
T Consensus 147 aGGl~~~~~~~~~~~~~ 163 (166)
T PRK14023 147 EGSILEYYRKHGRFPGE 163 (166)
T ss_pred cCCHHHHHHHhCCCCCC
Confidence 99999999999998865
No 5
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.4e-52 Score=352.95 Aligned_cols=153 Identities=40% Similarity=0.740 Sum_probs=135.9
Q ss_pred eEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhh
Q 025777 72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPV 151 (248)
Q Consensus 72 G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~ 151 (248)
||||++|||||||+|+|++||... ++++|++|+|++++|+|..+ .++| +|||||+|||||||||||+|
T Consensus 1 grv~~~gdnIdTD~IiP~~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~iiVaG~NFG~GSSRE~A~~ 68 (154)
T TIGR02087 1 GRVWKFGDDIDTDEIIPGRYLRTT-----DPDELASHAMEGIDPEFAKK-VRPG------DVIVAGKNFGCGSSREQAAL 68 (154)
T ss_pred CceEEcCCCcchhhCcHHHHhCcC-----CHHHHHhhccCcCCchhhhc-CCCC------cEEEcCCcccCCccHHHHHH
Confidence 799999999999999999999753 47899999999999999543 4555 79999999999999999999
Q ss_pred hHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hHHHHH
Q 025777 152 ALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVID 230 (248)
Q Consensus 152 al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~~ii~ 230 (248)
||+++||+||||+||++||+|||+|+| +++++.++ +.+++||+|+||+++++|+. ++|++|.+.+.++ ++++++
T Consensus 69 al~~~Gi~aVIA~SFa~If~rN~in~G-lp~i~~~~---~~i~~gd~i~vdl~~~~v~~-~~g~~~~~~~l~~~~~~i~~ 143 (154)
T TIGR02087 69 ALKAAGIAAVIAESFARIFYRNAINIG-LPLIEAKT---EGIKDGDEVTVDLETGEIRV-NGNEEYKGEPLPDFLLEILR 143 (154)
T ss_pred HHHHhCCCEEEeehHHHHHHhhhhhcC-CCcEecCH---HHCCCCCEEEEECCCCEEEE-CCCeEEEEeCCCHHHHHHHH
Confidence 999999999999999999999999999 45555443 56889999999999999884 5678899988887 799999
Q ss_pred hCCHHHHHHHh
Q 025777 231 AGGIFAYARKT 241 (248)
Q Consensus 231 aGGll~y~kk~ 241 (248)
+||++||+|++
T Consensus 144 aGGl~~~~~~~ 154 (154)
T TIGR02087 144 EGGLLEYLKKR 154 (154)
T ss_pred cCCHHHHHhcC
Confidence 99999999874
No 6
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-51 Score=353.90 Aligned_cols=166 Identities=35% Similarity=0.545 Sum_probs=138.6
Q ss_pred CCCceEEeEEEecC-CCCCccccccccccccCCCCchhhHHHhhhhhcCCC---CCccccccccCCcccceeEEEecCcc
Q 025777 65 EPTATFHGLCYVVG-DNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLP---ATYTTRFIDENETKTKYKIIIAGGNF 140 (248)
Q Consensus 65 ~~~~~i~G~v~~lg-DnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~---~~f~~r~~~~G~~~~~~~IIVaG~NF 140 (248)
+.++.++|++|+|+ ||||||+|||++||+.. ++++|++|+|++.+ |+|. ..+++ +++++|||||+||
T Consensus 2 ~~f~~~~G~~~pl~~dnIDTD~IIP~~fLk~i-----~~~gl~k~~f~~~r~~~PdF~-~n~~~---yq~g~IlVag~NF 72 (191)
T COG0066 2 EKFTKITGRVWPLGRDNVDTDQIIPKRFLKTI-----TRTGLGKHLFEDWRYLDPDFV-LNVPP---YQGGDILVAGENF 72 (191)
T ss_pred CceEEEeeeEEecCCCCCccccCccHHHhccc-----CHhhhhhcccccccccCcchh-hcCCc---cCCccEEEecCCC
Confidence 35778999999998 99999999999999876 37899999999888 8884 22222 3345899999999
Q ss_pred CCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhh-hhcC--CCCEEEEEccCcEEEeCCCCeEE
Q 025777 141 GCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC-EECS--TGDVVTIEIAESRLINHTTGKEY 217 (248)
Q Consensus 141 G~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~-~~~~--~Gd~I~IDL~~~~v~~~~~G~~~ 217 (248)
|||||||||+|||+++||+||||+||||||||||+||| +||+..+++.. +.++ +|++|+|||++++|++.++++.
T Consensus 73 GcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG-~Lpi~~~~~~~~~l~~~~~g~~i~VDL~~~~v~~~~~~~~- 150 (191)
T COG0066 73 GCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNG-LLPIVLAEEDVTELFEDVPGDEVTVDLETGEVTNPTGGEE- 150 (191)
T ss_pred CCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcC-cCceecChHHHHHHHHhCCCCEEEEEcCCCeEEeCCCCEE-
Confidence 99999999999999999999999999999999999999 68887665433 3344 4999999999999998654444
Q ss_pred EEeeCCC-hHHHHHhC----CHHHHHHHhC
Q 025777 218 KLKPIGD-LGPVIDAG----GIFAYARKTG 242 (248)
Q Consensus 218 ~~~~~~~-~~~ii~aG----Gll~y~kk~g 242 (248)
. .++++ .++++.+| ||+.|.+++.
T Consensus 151 ~-f~i~~f~~~~L~~GlD~iGlt~~~~~~i 179 (191)
T COG0066 151 P-FEIDDFRREILLNGLDDIGLTLQHKKEI 179 (191)
T ss_pred E-ccCCHHHHHHHHcCCcccchHHHHHHHH
Confidence 3 44555 68999999 9999988754
No 7
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=100.00 E-value=1.5e-46 Score=325.19 Aligned_cols=156 Identities=29% Similarity=0.508 Sum_probs=127.6
Q ss_pred CCCceEEeEEEec-CCCCCccccccccccccCCCCchhhHHHhhhhhcCC----------CCCccccccccCCcccceeE
Q 025777 65 EPTATFHGLCYVV-GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGL----------PATYTTRFIDENETKTKYKI 133 (248)
Q Consensus 65 ~~~~~i~G~v~~l-gDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l----------~~~f~~r~~~~G~~~~~~~I 133 (248)
++++.++|++|++ +||||||+|+|++||+.. ++++|++|+|+++ +|+| ..+.+..++.+|
T Consensus 2 ~~~~~~~G~~~~l~~dnIDTD~IiP~rfl~~~-----~~~~l~~~~f~~~R~~~~~g~~~~p~F----~ln~~~~~~~~I 72 (188)
T TIGR00171 2 APFKSHTGLVAPLDAANVDTDAIIPKQFLKRI-----TRTGFGKHLFFDWRFLDANGKEPNPDF----VLNQPQYQGASI 72 (188)
T ss_pred CCcEEEEEEEEECCCCcCcHhhhhHHHHhCcC-----CHHHHHHhccccccccccccCCCCcch----hhcccccCCCcE
Confidence 3678999999999 899999999999999764 4789999999873 3444 112222334489
Q ss_pred EEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchh-hhhh----cCCCCEEEEEccCcEE
Q 025777 134 IIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR-LCEE----CSTGDVVTIEIAESRL 208 (248)
Q Consensus 134 IVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~-~~~~----~~~Gd~I~IDL~~~~v 208 (248)
||||+|||||||||||+|||+++||+||||+||++||||||+|+| ++|++.+.+ +.+. .++|++|+|||++++|
T Consensus 73 lVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnG-ll~i~~~~~~i~~~~~~~~~~g~~i~vDl~~~~v 151 (188)
T TIGR00171 73 LLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNG-LLPIRLSYDEVKELFGQVENQGLQMTVDLENQLI 151 (188)
T ss_pred EEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCC-CCccccCHHHHHHHHHHhhCCCCEEEEECCCCEE
Confidence 999999999999999999999999999999999999999999999 678876533 2322 4899999999999999
Q ss_pred EeCCCCeEEEEeeCCC-hHHHHHhC
Q 025777 209 INHTTGKEYKLKPIGD-LGPVIDAG 232 (248)
Q Consensus 209 ~~~~~G~~~~~~~~~~-~~~ii~aG 232 (248)
++. +|++|.|+ +++ .++.+-+|
T Consensus 152 ~~~-~~~~~~f~-i~~~~r~~ll~G 174 (188)
T TIGR00171 152 HDS-EGKVYSFE-IDPFRKHCLING 174 (188)
T ss_pred EeC-CCeEEEEE-eCHHHHHHHHcC
Confidence 986 67889999 555 45666555
No 8
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=322.02 Aligned_cols=155 Identities=31% Similarity=0.507 Sum_probs=130.6
Q ss_pred CCCceEEeEEEec-CCCCCccccccccccccCCCCchhhHHHhhhhhcCCC--------CCccccccccCCcccceeEEE
Q 025777 65 EPTATFHGLCYVV-GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLP--------ATYTTRFIDENETKTKYKIII 135 (248)
Q Consensus 65 ~~~~~i~G~v~~l-gDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~--------~~f~~r~~~~G~~~~~~~IIV 135 (248)
.++++++|+||++ +||||||+|+|++||+.. ++++|++|+|++++ |+|. .+.+..++.+|||
T Consensus 2 ~~~~~i~G~~~~l~~dnIDTD~IiPa~fl~~~-----~~~~l~~~~f~~~r~~~~~~~~p~F~----ln~~~~~~~~IlV 72 (200)
T PRK01641 2 EKFTTHTGLAVPLDRANVDTDQIIPKQFLKRI-----TRTGFGKGLFDDWRYLDDGQPNPDFV----LNQPRYQGASILL 72 (200)
T ss_pred CCcEEEEEEEEEcCCCCCChhhcchHhHcCcC-----CHHHHHHhhhccccccccCCCCCCcc----ccccccCCCeEEE
Confidence 3678899999999 999999999999999764 47899999999886 6662 1112223348999
Q ss_pred ecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch----hhhhhc--CCCCEEEEEccCcEEE
Q 025777 136 AGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA----RLCEEC--STGDVVTIEIAESRLI 209 (248)
Q Consensus 136 aG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~----~~~~~~--~~Gd~I~IDL~~~~v~ 209 (248)
||+|||||||||||+|||+++||+||||+||++||+|||+|+| ++|++.++ ++.+.+ ++|++|+|||++++|+
T Consensus 73 aG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~G-ll~i~~~~~~i~~l~~~~~~~~g~~i~vDl~~~~v~ 151 (200)
T PRK01641 73 AGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNG-LLPIVLPEEDVDELFKLVEANPGAELTVDLEAQTVT 151 (200)
T ss_pred cCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCC-CCeEeeCHHHHHHHHHHHhcCCCCEEEEEcCCCEEe
Confidence 9999999999999999999999999999999999999999999 67887654 344455 7999999999999998
Q ss_pred eCCCCeEEEEeeCCC-hHHHHHhC
Q 025777 210 NHTTGKEYKLKPIGD-LGPVIDAG 232 (248)
Q Consensus 210 ~~~~G~~~~~~~~~~-~~~ii~aG 232 (248)
+. |++|.|+ +++ .++++.+|
T Consensus 152 ~~--~~~~~f~-i~~~~~~~l~~G 172 (200)
T PRK01641 152 AP--DKTFPFE-IDPFRRHCLLNG 172 (200)
T ss_pred cC--CeEEEEE-cCHHHHHHHHcC
Confidence 74 6889999 665 68888888
No 9
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=5.9e-44 Score=357.29 Aligned_cols=163 Identities=32% Similarity=0.516 Sum_probs=141.3
Q ss_pred CCceEEeEE-EecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCC
Q 025777 66 PTATFHGLC-YVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGS 144 (248)
Q Consensus 66 ~~~~i~G~v-~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GS 144 (248)
-+..++|+| ++++||||||+|+|++|+..... +++.|++|+|++++|+|..+ .++| +|||||+||||||
T Consensus 527 ~~~~i~g~v~~~~gdnI~TD~I~P~~~~~~~~~---~~~~l~~~~~~~~dp~f~~~-~~~g------~iiVaG~NfG~GS 596 (712)
T TIGR00139 527 FPEEFSGELVFCDADNINTDGIYPGKYTYQDDV---PKEKMAQVCMENYDAEFRTK-AHEG------DILVSGFNFGCGS 596 (712)
T ss_pred CCceEEEEEEEcCCCCCchhhccchhhcccCCC---CHHHHHHhhccCCCcchhhc-CCCC------CEEEeCCccCCCC
Confidence 366899998 56699999999999999954222 46899999999999999544 5556 7999999999999
Q ss_pred CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcC-------------CCCEEEEEccCcEEEeC
Q 025777 145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECS-------------TGDVVTIEIAESRLINH 211 (248)
Q Consensus 145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~-------------~Gd~I~IDL~~~~v~~~ 211 (248)
|||||+|||+++||+||||+||+|||||||+|+| ++||+++. +.+.+. +||+|+||++.++|++
T Consensus 597 SREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~G-l~~l~~~~-~~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g~i~~- 673 (712)
T TIGR00139 597 SREQAATAILAKGINLVVSGSFGNIFSRNSINNA-LLGLEIPA-LIKKLREKFGGADKELTRRTGWFLKWDVADAKIEV- 673 (712)
T ss_pred cHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcC-CceEEchh-HHHHHHhhhcccccccccCCCCEEEEEccCCEEEE-
Confidence 9999999999999999999999999999999999 67787643 444444 7999999999999998
Q ss_pred CCC----e---EEEEeeCCC-hHHHHHhCCHHHHHHHh
Q 025777 212 TTG----K---EYKLKPIGD-LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 212 ~~G----~---~~~~~~~~~-~~~ii~aGGll~y~kk~ 241 (248)
++| + +|++.++++ +++||++|||++|+|++
T Consensus 674 t~g~~~~~~~~~~~~~~~p~~~~eii~~GGl~~~~k~~ 711 (712)
T TIGR00139 674 QEGSLDGGPILEHKVGELGKNLQEIIAKGGLEGWVKNA 711 (712)
T ss_pred CCCcccccceeEEEcCCCCHHHHHHHHcCCHHHHHHhc
Confidence 666 3 899999988 79999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=4.1e-42 Score=342.94 Aligned_cols=166 Identities=31% Similarity=0.508 Sum_probs=142.4
Q ss_pred CceEEeEE-EecCCCCCcccccccc--ccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCC
Q 025777 67 TATFHGLC-YVVGDNIDTDQIIPAE--YLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCG 143 (248)
Q Consensus 67 ~~~i~G~v-~~lgDnIdTD~IiPa~--~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~G 143 (248)
...+.++| |+++||||||||+|++ |++.+. +.+.|++|+|++++|+|..+..+.| .+|||||+|||||
T Consensus 466 ~~~~~~~vl~~~gd~i~TD~I~Pa~~~~l~~r~----~~~~l~~~~f~~~~~~f~~~~~~~~-----~~iiVaG~nfG~G 536 (646)
T PRK07229 466 PDLLEGKVLLKVGDNITTDHIMPAGAKWLPYRS----NIPNISEFVFEGVDNTFPERAKEQG-----GGIVVGGENYGQG 536 (646)
T ss_pred CcCceEEEEEEcCCCCChhccCcCCcchhccCC----CHHHHHHHHhccCChhhhHHHHhcC-----CcEEEecCccCCC
Confidence 46788998 8999999999999999 887543 4689999999999999965432222 3899999999999
Q ss_pred CCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeec-chhhhhhcCCCCEEEE-Ecc----Cc--EEEeCCCCe
Q 025777 144 SSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDS-EARLCEECSTGDVVTI-EIA----ES--RLINHTTGK 215 (248)
Q Consensus 144 SSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~-~~~~~~~~~~Gd~I~I-DL~----~~--~v~~~~~G~ 215 (248)
||||||+|+++++||+||||+||+|||+|||+|+| +|||++ ++++++.++.||+|+| |++ .+ +++++++|+
T Consensus 537 SSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~G-llpl~~~~~~~~~~l~~gd~i~i~dl~~~~~~~~v~v~~~~~~~ 615 (646)
T PRK07229 537 SSREHAALAPRYLGVKAVLAKSFARIHKANLINFG-ILPLTFADPADYDKIEEGDVLEIEDLREFLPGGPLTVVNVTKDE 615 (646)
T ss_pred CchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcC-CceEEecChHhHhhcCCCCEEEEccchhcCCCCeEEEEEecCCE
Confidence 99999999999999999999999999999999999 789987 6778889999999999 886 45 355666788
Q ss_pred EEEEe-eCCC-hHHHHHhCCHHHHHHHhC
Q 025777 216 EYKLK-PIGD-LGPVIDAGGIFAYARKTG 242 (248)
Q Consensus 216 ~~~~~-~~~~-~~~ii~aGGll~y~kk~g 242 (248)
+|++. +.++ +++++++||++||++++.
T Consensus 616 ~~~~~~~l~~~e~~i~~aGGll~~~~~~~ 644 (646)
T PRK07229 616 EIEVRHTLSERQIEILLAGGALNLIKKKL 644 (646)
T ss_pred EEEEEccCCHHHHHHHHcCCHHHHHHHhc
Confidence 99985 5555 689999999999998853
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=3.2e-42 Score=343.87 Aligned_cols=168 Identities=32% Similarity=0.446 Sum_probs=141.1
Q ss_pred ceEEeEE-EecCCCCCccccccccccc--cCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCC
Q 025777 68 ATFHGLC-YVVGDNIDTDQIIPAEYLT--LVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGS 144 (248)
Q Consensus 68 ~~i~G~v-~~lgDnIdTD~IiPa~~l~--~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GS 144 (248)
..++|+| |+++||||||||+|++|+. .+. +.+.+++|+|++++|+|.. ..+.+.......|||||+||||||
T Consensus 469 ~~i~grv~~~~gDnI~TD~I~Pa~~~~l~~r~----~~~~l~~~~~~~~~p~f~~-~~~~~~~~~~~~iiVaG~nfG~GS 543 (658)
T TIGR01342 469 ADIEGETALIMEDNITTDHIIPAGADILKFRS----NIEAISEFTLHRIDDEFAE-RAKAADEKGKAGIIIAGENYGQGS 543 (658)
T ss_pred cccCceEEEEcCCCCChhcCCCCCccccccCC----CHHHHhhheeeCCCchHHH-HhhcccccCCceEEEcCCcCCCCc
Confidence 5788995 8999999999999999753 232 4678999999999999953 344443333457999999999999
Q ss_pred CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhcCCCCEEEEE--cc-------CcEEEeCCCC
Q 025777 145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEECSTGDVVTIE--IA-------ESRLINHTTG 214 (248)
Q Consensus 145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~~~Gd~I~ID--L~-------~~~v~~~~~G 214 (248)
|||||+|+++++||+||||+||+|||+|||+|+| ++||++. +++++.++.||+++|| ++ +..+++.++|
T Consensus 544 SREhAa~a~~~lGv~aVIA~SFarIf~~N~in~G-llpl~~~d~~~~~~i~~Gd~l~id~~l~~~~~~g~~~~i~~~~~g 622 (658)
T TIGR01342 544 SREHAALAPMFLGVEAVIAKSFARIHHANLFNFG-ILPLEFDNEEDYAKFELGDDIEIPDDLAAALADGEDEFTINKNDD 622 (658)
T ss_pred cHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcC-cceEEecChhhHHHhCCCCEEEECchhhhhcCCCCceEEEEecCC
Confidence 9999999999999999999999999999999999 7889864 5688899999999998 65 3456666678
Q ss_pred eEEEEe-eCCC-hHHHHHhCCHHHHHHHh
Q 025777 215 KEYKLK-PIGD-LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 215 ~~~~~~-~~~~-~~~ii~aGGll~y~kk~ 241 (248)
.++.+. +.++ +++|+++||++||++++
T Consensus 623 ~~~~~~~~l~~~e~ei~~aGGlln~~~~~ 651 (658)
T TIGR01342 623 EEALATLDASEREKEILAAGGKLNLIKNK 651 (658)
T ss_pred eEEEEeCCCCHHHHHHHHcCCHHHHHHHh
Confidence 888888 4455 78999999999999874
No 12
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=100.00 E-value=3e-42 Score=280.01 Aligned_cols=118 Identities=34% Similarity=0.499 Sum_probs=101.7
Q ss_pred ecCCCCCcccccccc--ccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhH
Q 025777 76 VVGDNIDTDQIIPAE--YLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVAL 153 (248)
Q Consensus 76 ~lgDnIdTD~IiPa~--~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al 153 (248)
++|||||||+|+|++ |+..+. +.++|++|+|++++|+|.. ..++|. ..|||||+|||||||||||+||+
T Consensus 1 ~~gdnidTD~IiP~~~~~~~~~~----~~~~l~~~~f~~~~p~f~~-~~~~~~----~~iiVaG~nFG~GSSRE~A~~al 71 (121)
T cd01579 1 KVGDNITTDHIMPAGAKVLPLRS----NIPAISEFVFHRVDPTFAE-RAKAAG----PGFIVGGENYGQGSSREHAALAP 71 (121)
T ss_pred CCCCcCChhhcCCCCccccccCC----CHHHHHHhhccCCCchHHh-hcccCC----CeEEEcCCcCCCCccHHHHHHHH
Confidence 579999999999995 555432 4688999999999999954 344542 25999999999999999999999
Q ss_pred HhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhcCCCCEEEEEc
Q 025777 154 GAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEECSTGDVVTIEI 203 (248)
Q Consensus 154 ~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~~~Gd~I~IDL 203 (248)
+.+||+||||+||+|||+|||+|+| ++|++.+ +.+++.+++||+|+|||
T Consensus 72 ~~~Gi~aVIA~SFa~If~rN~in~G-ll~i~~~~~~~~~~~~~gd~i~id~ 121 (121)
T cd01579 72 MYLGVRAVLAKSFARIHRANLINFG-ILPLTFADEDDYDRFEQGDQLELPL 121 (121)
T ss_pred HHHCCCEEEEccHHHHHHhHHhhcC-cceEEecChhhHhhcCCCCEEEcCC
Confidence 9999999999999999999999999 6788653 56788899999999986
No 13
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.5e-40 Score=337.87 Aligned_cols=207 Identities=24% Similarity=0.283 Sum_probs=160.7
Q ss_pred CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEE-eEE-EecCCCCCcccccccc----------ccccCC
Q 025777 30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFH-GLC-YVVGDNIDTDQIIPAE----------YLTLVP 96 (248)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~-G~v-~~lgDnIdTD~IiPa~----------~l~~~~ 96 (248)
..|+.|.+..|.|+|.|+|++ +++ ...+..++.+...+. .+| .++||+|+||||+||+ ||..+.
T Consensus 618 ~~l~~~~~~~~~wd~~StyI~---~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~g 694 (889)
T PRK12881 618 AAIEAPDGPLYDWDPKSTYIR---RPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENG 694 (889)
T ss_pred ccccCCCCCeeccCCCCCccc---CCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcC
Confidence 577889999999999999999 566 666666665655554 477 7889999999999997 998888
Q ss_pred CCchhhHHHhh----------hhhcCCC----------CCccccccccCCccc----------c--eeEEEecCccCCCC
Q 025777 97 SNPDEYEKLGS----------YALIGLP----------ATYTTRFIDENETKT----------K--YKIIIAGGNFGCGS 144 (248)
Q Consensus 97 ~~p~d~~~l~~----------~a~~~l~----------~~f~~r~~~~G~~~~----------~--~~IIVaG~NFG~GS 144 (248)
..|.|++.||. +.|..++ ++| +++.+.|+..+ . -.|||||+||||||
T Consensus 695 v~~~dfnsyg~rRgN~evm~rgtF~nir~~N~l~~~~egg~-t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GS 773 (889)
T PRK12881 695 VPKADFNSYGSRRGNHEVMMRGTFANVRIKNLMIPGKEGGL-TLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGS 773 (889)
T ss_pred CChhhcccccccccchHHhhhhccccCcccceeccccccCe-eEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCC
Confidence 88889998886 2333322 344 55556665532 1 27999999999999
Q ss_pred CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch-hhhh--hcCCCCEEEEEccCc------EEE---eCC
Q 025777 145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA-RLCE--ECSTGDVVTIEIAES------RLI---NHT 212 (248)
Q Consensus 145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~-~~~~--~~~~Gd~I~IDL~~~------~v~---~~~ 212 (248)
|||||+|+++++||+||||+||+|||++|++|+| +|||++.+ ..++ .++.||+++|+...+ .++ ++.
T Consensus 774 SRe~Aa~~~~~lGv~aVIA~SFaRIh~~Nli~~G-ilpL~f~~~~~~~~l~l~g~d~i~I~~~~~~i~p~~~v~v~~~~~ 852 (889)
T PRK12881 774 SRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMG-VLPLQFKGGDSRQSLGLTGGETFDIEGLPGEIKPRQDVTLVIHRA 852 (889)
T ss_pred cHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcC-cceEEeCCccchhhcCcCCCCEEEEeCCccccCCCCeEEEEEEeC
Confidence 9999999999999999999999999999999999 79998743 3555 578999999974322 222 344
Q ss_pred CCeEEEE--eeCC--C-hHHHHHhCCHHHHHHHh
Q 025777 213 TGKEYKL--KPIG--D-LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 213 ~G~~~~~--~~~~--~-~~~ii~aGGll~y~kk~ 241 (248)
+|+++++ .... + +.+++++||+|||++++
T Consensus 853 ~G~~~~~~~~~r~dt~~e~e~~~aGGiL~yv~~~ 886 (889)
T PRK12881 853 DGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQ 886 (889)
T ss_pred CCCEEEEEEEeccCCHHHHHHHHcCCHHHHHHHH
Confidence 6765555 3333 3 68999999999999764
No 14
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1.6e-39 Score=328.14 Aligned_cols=166 Identities=22% Similarity=0.268 Sum_probs=142.2
Q ss_pred CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccc---cCCcccceeEEEecCcc
Q 025777 64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFID---ENETKTKYKIIIAGGNF 140 (248)
Q Consensus 64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~---~G~~~~~~~IIVaG~NF 140 (248)
+..+.+++|+||+++||||||+|+|++|+..++ |.+.+++|+|++++|+|..+..+ +| ..|+|+|+||
T Consensus 160 ~~l~~~i~g~V~KvgdnInTD~I~Pa~~~~~Rs----dipl~a~~~~e~~~p~f~~~i~~~~~~G-----~~IivaG~nf 230 (835)
T PRK09238 160 PELPEKITVTVFKVTGETNTDDLSPAPDAWSRP----DIPLHALAMLKNRRPGPIKQIEELKKKG-----HPVAYVGDVV 230 (835)
T ss_pred CCCccccEEEEEEeCCCCchhccCCccccccCC----CHHHHHHHhccCCCCcHHHHHHhhccCC-----CEEEEECCCE
Confidence 344678899999999999999999999997653 57889999999999999544221 34 2599999999
Q ss_pred CCCCCcCcHhhhHHhc-C-----------ccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEE
Q 025777 141 GCGSSREHAPVALGAA-G-----------CSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRL 208 (248)
Q Consensus 141 G~GSSREhAa~al~~l-G-----------I~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v 208 (248)
|||||||||+|++..+ | .++|||+||||||||||+|+| +||++.+ ++.+++||+|+||+.+++|
T Consensus 231 G~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~Nain~G-lLpIe~d---~~~i~~Gd~i~Id~~~g~I 306 (835)
T PRK09238 231 GTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFNTMEDSG-ALPIELD---VSKLNMGDVIDIYPYKGKI 306 (835)
T ss_pred eCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHhhhHHcC-CceEEeC---HHHcCCCCEEEEECCCCEE
Confidence 9999999999998433 2 499999999999999999999 6889875 6778999999999999999
Q ss_pred EeCCCCeE-EEEeeCCC-hHHHHHhCCHHHHHHHhCC
Q 025777 209 INHTTGKE-YKLKPIGD-LGPVIDAGGIFAYARKTGM 243 (248)
Q Consensus 209 ~~~~~G~~-~~~~~~~~-~~~ii~aGGll~y~kk~g~ 243 (248)
++ .+|+. +.|++.++ .+++++|||++||++.+|+
T Consensus 307 ~~-~~g~~~~~f~l~p~~~~div~AGGli~~i~gr~l 342 (835)
T PRK09238 307 RN-ETGEVIATFKLKTDVLLDEVRAGGRIPLIIGRGL 342 (835)
T ss_pred Ee-CCCeEEEEEecCcHHHHHHHHcCChHHHHHhccc
Confidence 88 45654 89999877 7999999999999988765
No 15
>PLN00070 aconitate hydratase
Probab=100.00 E-value=1.5e-38 Score=323.96 Aligned_cols=207 Identities=25% Similarity=0.341 Sum_probs=159.6
Q ss_pred CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCC
Q 025777 30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVP 96 (248)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~ 96 (248)
..|..|++..|.|++.|+|+. +++ +.+.+..+.+...+.+ +| .++||+|+||||+||+ ||..+.
T Consensus 666 ~~l~~p~~~~~~wd~~Styi~---~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~g 742 (936)
T PLN00070 666 NQLSVPSGTLYSWDPKSTYIH---EPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERG 742 (936)
T ss_pred ccCCCCCCCcccCCCCcceee---cCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcC
Confidence 346789999999999999999 776 7777776666666744 77 7889999999999997 899888
Q ss_pred CCchhhHHHhh----------hhhc--CC--------CCCccccccccCCccc------c------eeEEEecCccCCCC
Q 025777 97 SNPDEYEKLGS----------YALI--GL--------PATYTTRFIDENETKT------K------YKIIIAGGNFGCGS 144 (248)
Q Consensus 97 ~~p~d~~~l~~----------~a~~--~l--------~~~f~~r~~~~G~~~~------~------~~IIVaG~NFG~GS 144 (248)
..|.|++.||. ..|. ++ ..++ +++.+.|+..+ . -.|||||+||||||
T Consensus 743 v~~~dfnsygsrRgN~evm~rgtFaNir~~N~~~~g~~g~~-t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GS 821 (936)
T PLN00070 743 VDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVGPK-TVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGS 821 (936)
T ss_pred CChhhccccccccCcchhhhceeccchhhhhhhcCCCcCCe-eEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCC
Confidence 88889988865 2222 11 1223 45555665532 1 27999999999999
Q ss_pred CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch-hhhhhcCC--CCEEEEEccC-------c-EEE-eCC
Q 025777 145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA-RLCEECST--GDVVTIEIAE-------S-RLI-NHT 212 (248)
Q Consensus 145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~-~~~~~~~~--Gd~I~IDL~~-------~-~v~-~~~ 212 (248)
|||||+|+++++||+||||+||+|||++||+|+| +|||++.+ ..++.+.. ++.++|++.+ + .++ ...
T Consensus 822 SRe~AA~~~~~lGvkaVIA~SF~rIhrsNli~~G-iLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~ 900 (936)
T PLN00070 822 SRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTD 900 (936)
T ss_pred cHHHHHHHHHHhCCcEEEEccHHHHHHhhhhhcC-cceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeC
Confidence 9999999999999999999999999999999999 89998743 45555543 5667777633 2 222 224
Q ss_pred CCeEEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777 213 TGKEYKLKPIGD---LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 213 ~G~~~~~~~~~~---~~~ii~aGGll~y~kk~ 241 (248)
+|++|.+....+ +.+++++||+|||++++
T Consensus 901 ~g~~~~~~~r~dt~~E~~~~~~GGiL~~v~r~ 932 (936)
T PLN00070 901 NGKSFTCTLRFDTEVELAYFDHGGILPYVIRN 932 (936)
T ss_pred CCeEEEEEEeCCCHHHHHHHHcCCHHHHHHHH
Confidence 678888776543 68999999999998764
No 16
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=321.51 Aligned_cols=207 Identities=24% Similarity=0.343 Sum_probs=160.7
Q ss_pred CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCC
Q 025777 30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVP 96 (248)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~ 96 (248)
..|+.|++..|.|+|.|+|++ +++ +.+++.++.+...+.| || .++||+|+||||+||+ ||..+.
T Consensus 631 ~~l~~~~~~~~~w~~~StyI~---~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~g 707 (898)
T PTZ00092 631 NELQVPKGKLYEWDEKSTYIH---NPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERG 707 (898)
T ss_pred hhccCCCCCccccCCCCCccc---CCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcC
Confidence 457788899999999999999 555 7777766666555544 77 7889999999999997 898888
Q ss_pred CCchhhHHHhh----------hhhc--CC-------CCCccccccccCCccc------------ceeEEEecCccCCCCC
Q 025777 97 SNPDEYEKLGS----------YALI--GL-------PATYTTRFIDENETKT------------KYKIIIAGGNFGCGSS 145 (248)
Q Consensus 97 ~~p~d~~~l~~----------~a~~--~l-------~~~f~~r~~~~G~~~~------------~~~IIVaG~NFG~GSS 145 (248)
..|.|++.||. ..|. .+ .+.+ +++.+.|+..+ .-.|||||+|||||||
T Consensus 708 v~~~dfnsygsrRgN~~vm~RgtF~Niri~N~l~g~~g~~-t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSS 786 (898)
T PTZ00092 708 VERKDFNTYGARRGNDEVMVRGTFANIRLINKLCGKVGPN-TVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSS 786 (898)
T ss_pred CChhhccccccccCCchhhcceeccccceeeeeccCCCCc-eEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCc
Confidence 88899988876 2232 32 2334 44455565532 1279999999999999
Q ss_pred cCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhh--cCCCCEEEEEc-cC----c-EEE-eCCCCe
Q 025777 146 REHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEE--CSTGDVVTIEI-AE----S-RLI-NHTTGK 215 (248)
Q Consensus 146 REhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~--~~~Gd~I~IDL-~~----~-~v~-~~~~G~ 215 (248)
||||+|+++++||+||||+||+|||++||+|+| +|||++. +..++. +..+++++|++ .+ + .++ ...+|+
T Consensus 787 Re~AA~~~~~lGvraVIA~SF~rIh~~Nli~~G-vlPL~f~~~~~~~~l~~~~~~~i~i~~~~~~l~p~~~v~v~~~~G~ 865 (898)
T PTZ00092 787 RDWAAKGPYLQGVKAVIAESFERIHRSNLVGMG-ILPLQFLNGENADSLGLTGKEQFSIDLNSGELKPGQDVTVKTDTGK 865 (898)
T ss_pred HHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcC-cceeecCCcccHHHhcCCCCeEEEEeccccccCCCCeEEEEeCCCc
Confidence 999999999999999999999999999999999 8999874 345555 45677899976 22 2 333 235688
Q ss_pred EEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777 216 EYKLKPIGD---LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 216 ~~~~~~~~~---~~~ii~aGGll~y~kk~ 241 (248)
+|.+...-+ +.+++++||+|||++++
T Consensus 866 ~~~~~~r~dt~~e~~y~~~GGiL~yv~~~ 894 (898)
T PTZ00092 866 TFDTILRIDTEVEVEYFKHGGILQYVLRK 894 (898)
T ss_pred EEEEEEeCCCHHHHHHHHcCCHHHHHHHH
Confidence 888776542 67999999999998664
No 17
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=8.5e-39 Score=260.70 Aligned_cols=99 Identities=32% Similarity=0.491 Sum_probs=87.2
Q ss_pred cCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHhc
Q 025777 77 VGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAA 156 (248)
Q Consensus 77 lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~l 156 (248)
..||||||+|+|++|+..... +.+.|++|+|++++|+|. ..+++| +|||+|+|||||||||||+|||+.+
T Consensus 2 ~~DnInTD~IiP~~y~~~~~~---~~e~la~~~~e~~dp~f~-~~v~~g------dilVaG~nFG~GSSRE~A~~al~~~ 71 (129)
T cd01674 2 DADNLNTDGIYPGKYTYQDDI---TPEKMAEVCMENYDSEFS-TKTKQG------DILVSGFNFGTGSSREQAATALLAK 71 (129)
T ss_pred CccccchhccCcccccccCCC---CHHHHHHhhcccCCchhh-hcCCCC------CEEEeCCccCCCCcHHHHHHHHHHc
Confidence 369999999999999943222 468899999999999995 446667 7999999999999999999999999
Q ss_pred CccEEEechhhHHHhhchhhcCceeeeecc
Q 025777 157 GCSAVVAESYARIFFRNSVATGEIYPLDSE 186 (248)
Q Consensus 157 GI~aVIAeSFarIf~rN~in~GlilPL~~~ 186 (248)
||++|||+||+|||+|||+|+| +++++.+
T Consensus 72 Gi~~VIA~SFa~If~rN~iN~G-l~~i~~~ 100 (129)
T cd01674 72 GIPLVVSGSFGNIFSRNSINNA-LLSIELP 100 (129)
T ss_pred CccEEEechHHHHHHHhhHhcC-CCeEech
Confidence 9999999999999999999999 5677654
No 18
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=3.2e-38 Score=318.18 Aligned_cols=165 Identities=20% Similarity=0.273 Sum_probs=143.7
Q ss_pred CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccc---cccCCcccceeEEEecCcc
Q 025777 64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRF---IDENETKTKYKIIIAGGNF 140 (248)
Q Consensus 64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~---~~~G~~~~~~~IIVaG~NF 140 (248)
+..++.++|+||+++||||||+|+|++|+.++. |.+.+++++|+..+|+|..+. .++|. .|+|+|+||
T Consensus 161 ~~~~~~i~g~V~k~gddinTD~i~Pa~~a~sr~----D~~~~a~~m~~~~~p~~~~~i~~~~~~Gd-----~iivaG~nf 231 (844)
T TIGR00117 161 PALAEKITVTVFKVTGETNTDDLSPAPDAWTRP----DIPLHALAMLKNAREGIEPQIEALKQKGF-----PVAYVGDVV 231 (844)
T ss_pred CCcchheEEEEEEeCCCCchhccCChhhhhcCC----CHHHHHHHHhhcCCccHHHHHHHhccCCC-----eEEEeCCce
Confidence 344678899999999999999999999998763 678899999999999985332 14452 399999999
Q ss_pred CCCCCcCcHhhhH-------------HhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcE
Q 025777 141 GCGSSREHAPVAL-------------GAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESR 207 (248)
Q Consensus 141 G~GSSREhAa~al-------------~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~ 207 (248)
|||||||||+.++ +.+| .+|||+|||||||||++|.| ++|++.+ ++.+++||+|+||+.+|+
T Consensus 232 G~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFfrnain~G-l~~ie~~---~~~l~~GD~i~Id~~~G~ 306 (844)
T TIGR00117 232 GTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFFNTMEDSG-ALPIEVD---VSNLNMGDVIDIYPYKGE 306 (844)
T ss_pred ecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhhcchhhcC-CCeEEeC---HhhcCCCCEEEEECCCCE
Confidence 9999999999999 9999 99999999999999999999 5677654 678999999999999999
Q ss_pred EEeCCCCeE-EEEeeCCC-hHHHHHhCCHHHHHHHhCC
Q 025777 208 LINHTTGKE-YKLKPIGD-LGPVIDAGGIFAYARKTGM 243 (248)
Q Consensus 208 v~~~~~G~~-~~~~~~~~-~~~ii~aGGll~y~kk~g~ 243 (248)
|++. +|++ ++|++.++ .+++++|||++||+-.+|+
T Consensus 307 I~n~-~g~~~~~f~~~p~~l~div~AGGli~~i~gr~l 343 (844)
T TIGR00117 307 ITNH-EGELLATFELKPETLLDEVRAGGRIPLIIGRGL 343 (844)
T ss_pred EEeC-CCCEEEEeeeCCHHHHHHHHcCCchhhhhcccc
Confidence 9987 4555 99999998 6999999999999877654
No 19
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=9.3e-38 Score=316.88 Aligned_cols=207 Identities=25% Similarity=0.358 Sum_probs=159.1
Q ss_pred CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCC
Q 025777 30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVP 96 (248)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~ 96 (248)
..|+.|++..|.|+|.|+|++ +++ +.+++.++.+...+.+ +| .++||+|+||||+||+ ||..+.
T Consensus 607 ~~l~~~~~~~~~w~~~StyI~---~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~g 683 (876)
T TIGR01341 607 NSIKTPSGDTYSWDEKSTYIR---LPPFFEEMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERG 683 (876)
T ss_pred cccCCCCCCccccCCCCCccc---CCCCCCccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcC
Confidence 456788999999999999999 555 7777776666555644 67 7889999999999996 688888
Q ss_pred CCchhhHHHhh----------hhhcCC--C--------CCccccccccCCccc------------ceeEEEecCccCCCC
Q 025777 97 SNPDEYEKLGS----------YALIGL--P--------ATYTTRFIDENETKT------------KYKIIIAGGNFGCGS 144 (248)
Q Consensus 97 ~~p~d~~~l~~----------~a~~~l--~--------~~f~~r~~~~G~~~~------------~~~IIVaG~NFG~GS 144 (248)
..|.|++.||. +.|..+ + +++ +++.+.|+..+ .-.|||||+||||||
T Consensus 684 v~~~dfnsygsrRgN~evm~rgtFanir~~N~l~~g~egg~-t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GS 762 (876)
T TIGR01341 684 VSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMVKGKEGGY-TVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGS 762 (876)
T ss_pred CChhhcccccccccCHHHHHHhhcccchhhhhcccCccCce-eEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCC
Confidence 88888888877 233322 2 344 56666776642 127999999999999
Q ss_pred CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhc--CCCCEEEE-Ec---cCc-E--EEe-CCC
Q 025777 145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEEC--STGDVVTI-EI---AES-R--LIN-HTT 213 (248)
Q Consensus 145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~--~~Gd~I~I-DL---~~~-~--v~~-~~~ 213 (248)
|||||+|+++++||+||||+||+|||++||+|+| +|||++. ...++.+ ..+|+++| ++ ..+ . ++. ..+
T Consensus 763 SRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~~G-ilpl~~~~~~~~~~l~l~g~e~~~i~~~~~l~pg~~v~v~~~~~~ 841 (876)
T TIGR01341 763 SRDWAAKGTKLLGVKAVIAESFERIHRSNLVGMG-VIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVTVTFTNSK 841 (876)
T ss_pred cHHHHHHHHHHhCCcEEEEccHHHHHHhhHhhcC-cceEecCCCCCHHHhCCCCCCeEEEcCccccCCCCEEEEEEEcCC
Confidence 9999999999999999999999999999999999 7999864 3456664 55788888 33 222 2 232 235
Q ss_pred C--eEEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777 214 G--KEYKLKPIGD---LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 214 G--~~~~~~~~~~---~~~ii~aGGll~y~kk~ 241 (248)
| ++|.+....+ +.+++++||+|||++++
T Consensus 842 g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv~r~ 874 (876)
T TIGR01341 842 GEKITFKCVLRIDTEVELDYYKHGGILQYVLRK 874 (876)
T ss_pred CCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHh
Confidence 6 4566655543 68999999999998764
No 20
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-38 Score=294.83 Aligned_cols=240 Identities=52% Similarity=0.747 Sum_probs=186.8
Q ss_pred cccccccccCCCCCCCCcccCCcccccC---CCCCCCccccce----eeccCCCCccCcc--CCCCCCceEEeEEEecCC
Q 025777 9 FGANTTFTSSPIPKTKPLFIPHSLKFTT---GNGRAAVTFQRA----VSVIPKATSADSR--ATKEPTATFHGLCYVVGD 79 (248)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~i~G~v~~lgD 79 (248)
.+..+.|..-+...+..++.+.+|.+-. ....+..+.... ...++|..+.... ......+++++.+..+.|
T Consensus 216 ~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~sSl~m~~F~tLc~vv~d 295 (502)
T KOG0454|consen 216 GGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTSSLGMETFHTLCGVVAD 295 (502)
T ss_pred cccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccccccCcceeeeehhhhh
Confidence 4555666555555555666566666631 222223222221 1134443322111 112335678899988999
Q ss_pred CCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHhcCcc
Q 025777 80 NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCS 159 (248)
Q Consensus 80 nIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~lGI~ 159 (248)
|||||+|||++|++....++.+++.+..+.+.++..+|.++|+.++|...+|.|+|+|+|||||||||||+|+|.+.|++
T Consensus 296 NiDTD~IIP~qfltli~~~~~~~~~f~~~~~dg~~k~~~~dFv~~vE~~~~~siii~~DNFGCGSSREHAPv~L~~~Gak 375 (502)
T KOG0454|consen 296 NIDTDQIIPAQFLTLIPSTGLILSCFYEVALDGLPKSFVTDFVLPVEPLRKYSIIIGGDNFGCGSSREHAPVCLGAAGAK 375 (502)
T ss_pred hCCcCcccChhhhcccccchhhhhhhhhheecCCchhhccceeccccccceeEEEeccCCcccccccccCcchhhhcccc
Confidence 99999999999999999888888889999998887778899999999999999999999999999999999999999999
Q ss_pred EEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccC---cEEEeCCCCeEE-EEeeCCChHHHHHhCCHH
Q 025777 160 AVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAE---SRLINHTTGKEY-KLKPIGDLGPVIDAGGIF 235 (248)
Q Consensus 160 aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~---~~v~~~~~G~~~-~~~~~~~~~~ii~aGGll 235 (248)
+|||+||+||||||++.+|++.|+.....+++++..||+.+|.+.. ++.+++++|+.+ .++|..+.-..+-+||+.
T Consensus 376 aivA~Sya~IFfrN~~atG~l~~~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad~I~ 455 (502)
T KOG0454|consen 376 AIVAPSYARIFFRNSVATGELPPLPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDADGIF 455 (502)
T ss_pred eecchhHHHHHHHhHHhcCCccCCCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCchHHH
Confidence 9999999999999999999877777666778889999998887644 357778888887 777877777788999999
Q ss_pred HHHHHhCCCcCCC
Q 025777 236 AYARKTGMIASRN 248 (248)
Q Consensus 236 ~y~kk~g~~~~~~ 248 (248)
.|++|+|||++.|
T Consensus 456 ~~~~ke~mIss~~ 468 (502)
T KOG0454|consen 456 AYARKEGMISSTE 468 (502)
T ss_pred Hhhccccccchhh
Confidence 9999999999753
No 21
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=4.5e-37 Score=312.19 Aligned_cols=207 Identities=25% Similarity=0.351 Sum_probs=156.8
Q ss_pred CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceE-EeEE-EecCCCCCcccccccc----------ccccCC
Q 025777 30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATF-HGLC-YVVGDNIDTDQIIPAE----------YLTLVP 96 (248)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i-~G~v-~~lgDnIdTD~IiPa~----------~l~~~~ 96 (248)
..++.|.+..|.|+|.|+|++ +++ +.+.+.+..+...+ ..+| .++||+|+||||+||+ ||..+.
T Consensus 617 ~~l~~~~~~~~~w~~~StyI~---~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~g 693 (888)
T PRK09277 617 NAIEVPEGPLYDWDPDSTYIR---NPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHG 693 (888)
T ss_pred ccCCCCCCCccccCCCCCccc---CCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcC
Confidence 346778899999999999999 555 77666655554444 5577 7889999999999997 788778
Q ss_pred CCchhhHHHhh----------hhhc--CC--------CCCccccccccCCccc------------ceeEEEecCccCCCC
Q 025777 97 SNPDEYEKLGS----------YALI--GL--------PATYTTRFIDENETKT------------KYKIIIAGGNFGCGS 144 (248)
Q Consensus 97 ~~p~d~~~l~~----------~a~~--~l--------~~~f~~r~~~~G~~~~------------~~~IIVaG~NFG~GS 144 (248)
..|.|++.||. ..|. ++ .+.| +++.+.|+..+ .-.|||||+||||||
T Consensus 694 v~~~dfnsygsrRgN~evm~RgtfaNir~~N~l~~g~egg~-t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GS 772 (888)
T PRK09277 694 VEPKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGY-TRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGS 772 (888)
T ss_pred CChhhccccccccccchhhhheeccccchhhhcccCCccce-EEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCC
Confidence 88888888876 2222 21 2335 56666665532 128999999999999
Q ss_pred CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhc--CCCCEEEEE-cc---Cc-EEEe---CCC
Q 025777 145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEEC--STGDVVTIE-IA---ES-RLIN---HTT 213 (248)
Q Consensus 145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~--~~Gd~I~ID-L~---~~-~v~~---~~~ 213 (248)
|||||+|+++++||+||||+||+|||++||+|+| +|||++. ...++.+ ..+|.++|+ ++ .+ .++. +.+
T Consensus 773 SRe~Aa~~~~~lgi~avia~sf~rI~~~Nli~~G-ilpl~~~~~~~~~~lgl~g~e~~~i~~l~~l~p~~~v~v~~~~~~ 851 (888)
T PRK09277 773 SRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMG-VLPLQFKPGESRKTLGLDGTETFDIEGLEDLKPGATVTVVITRAD 851 (888)
T ss_pred cHHHHHHHHHHhCCcEEEEecHHHHHHhhHhhcC-cceeecCCcccHHHhCCCCCceEEEcCcccCCCCCEEEEEEEeCC
Confidence 9999999999999999999999999999999999 7899864 3467765 677888883 42 22 2321 234
Q ss_pred C--eEEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777 214 G--KEYKLKPIGD---LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 214 G--~~~~~~~~~~---~~~ii~aGGll~y~kk~ 241 (248)
| ++|.+....+ +.+++++||+|||++++
T Consensus 852 G~~~~~~~~~r~dt~~Ei~y~~~GGiL~yv~r~ 884 (888)
T PRK09277 852 GEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRD 884 (888)
T ss_pred CCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHH
Confidence 5 5566665543 68999999999998764
No 22
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=4.7e-37 Score=238.19 Aligned_cols=89 Identities=58% Similarity=0.971 Sum_probs=81.7
Q ss_pred ecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHh
Q 025777 76 VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGA 155 (248)
Q Consensus 76 ~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~ 155 (248)
++|||||||+|+|++|+ + +|||+|+|||||||||||+|++++
T Consensus 1 ~~gd~idTD~i~p~~~~--------------------------------~------~ilVaG~nfG~GSSRE~A~~al~~ 42 (91)
T cd01577 1 LFGDNIDTDQIIPARFL--------------------------------G------DIIVAGKNFGCGSSREHAPWALKD 42 (91)
T ss_pred CCCCccchhhcchHHHc--------------------------------C------CEEEecCcccCCCcHHHHHHHHHH
Confidence 47999999999999997 2 599999999999999999999999
Q ss_pred cCccEEEechhhHHHhhchhhcCceeeeecchhhhh--hcCCCCEEEEEc
Q 025777 156 AGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE--ECSTGDVVTIEI 203 (248)
Q Consensus 156 lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~--~~~~Gd~I~IDL 203 (248)
+||++|||+||++||+|||+|+| +||+++++...+ ..++|++|+||+
T Consensus 43 ~Gi~avia~sFa~If~~N~~n~G-llp~~~~~~~~~~~~~~~g~~i~vdl 91 (91)
T cd01577 43 AGIRAVIAESFARIFFRNAINNG-LLPVTLADEDVEEVEAKPGDEVEVDL 91 (91)
T ss_pred hCCCEEEEchHHHHHHhhHhhCC-CcceeeChhhhhHhhcCCCCEEEEeC
Confidence 99999999999999999999999 788887766666 578999999986
No 23
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=1.1e-35 Score=299.26 Aligned_cols=169 Identities=22% Similarity=0.271 Sum_probs=133.4
Q ss_pred CCCceEEeEE-EecCCCCC-cccccccc-ccccCCCCchhhHHHhhhhhcCCCCCccccccc---------cCC------
Q 025777 65 EPTATFHGLC-YVVGDNID-TDQIIPAE-YLTLVPSNPDEYEKLGSYALIGLPATYTTRFID---------ENE------ 126 (248)
Q Consensus 65 ~~~~~i~G~v-~~lgDnId-TD~IiPa~-~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~---------~G~------ 126 (248)
.....+..+| .+++|||+ ||||+|++ ++..|+ + .+.+++|+|++.+|+|..|... .|.
T Consensus 532 ~l~~~~~~kv~~k~~D~itTTD~i~paG~~l~~Rs-n---~~~is~~~~~~~d~~~~~ra~~~~~~~~~~~~g~~~~~~~ 607 (751)
T PRK11413 532 ALTDNILLKVCSKILDPVTTTDELIPSGETSSYRS-N---PLGLAEFTLSRRDPGYVGRSKAVAELENQRLAGNVSELTE 607 (751)
T ss_pred CCCCcEEEEEEEEeCCCCccccccccCCCcccccc-C---HHHHhhhhccccChhhHHHHHHHhhhhhhhhcCCcHHHHH
Confidence 4456788888 78999997 99999998 566654 3 5789999999999999755433 222
Q ss_pred ----------------cccceeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhh-chhhcCceeeeecchhh
Q 025777 127 ----------------TKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFR-NSVATGEIYPLDSEARL 189 (248)
Q Consensus 127 ----------------~~~~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~r-N~in~GlilPL~~~~~~ 189 (248)
...+..++|+|+|||||||||||+++++++|++||||+||||||+| ||+|+| +|||+++..
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~iv~~~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~G-ilpL~f~~~- 685 (751)
T PRK11413 608 VFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWG-MLPFQMAEE- 685 (751)
T ss_pred HHHhhhhccccccccccccCceEEEEEeCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcC-ccceecCch-
Confidence 0112368888899999999999999999999999999999999777 999999 789987543
Q ss_pred hhhcCCCCEEEEEcc-----------CcEEEeCC---CCeEEEEeeCCC-hHHHHHhCCHHHHHHH
Q 025777 190 CEECSTGDVVTIEIA-----------ESRLINHT---TGKEYKLKPIGD-LGPVIDAGGIFAYARK 240 (248)
Q Consensus 190 ~~~~~~Gd~I~IDL~-----------~~~v~~~~---~G~~~~~~~~~~-~~~ii~aGGll~y~kk 240 (248)
..+++||+|+||.. .+++++.+ .+.++.+.+.++ +++||++||++||+|+
T Consensus 686 -~~i~~GD~l~id~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~ 750 (751)
T PRK11413 686 -PTFEVGDYIYIPGIRAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKN 750 (751)
T ss_pred -hhCCCCCEEEEechhhhhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhc
Confidence 27999999999854 23455443 234555556666 7999999999999986
No 24
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=6.1e-36 Score=301.56 Aligned_cols=190 Identities=21% Similarity=0.213 Sum_probs=136.5
Q ss_pred CCCCCCCccccceeeccCCC-CccCccCCCCCCceEE-eEE-EecCCCCCcccccccc-ccccCCCCchhhHHHhhhhhc
Q 025777 36 TGNGRAAVTFQRAVSVIPKA-TSADSRATKEPTATFH-GLC-YVVGDNIDTDQIIPAE-YLTLVPSNPDEYEKLGSYALI 111 (248)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~-G~v-~~lgDnIdTD~IiPa~-~l~~~~~~p~d~~~l~~~a~~ 111 (248)
....|.|.|.++|.+ +. +.... +...+. .+| +++||||+||||+||+ ||..++. ++.+.+|.|.
T Consensus 520 ~~~~~~~~p~s~~i~---~~~~f~~~-----~~~~i~~a~vLlk~gd~iTTDHIsPAG~~L~~rg~----~~~i~~n~~~ 587 (745)
T TIGR01340 520 PNVEVAVSPSSDRLQ---LLEPFEPW-----NGKDLSGLRVLIKVTGKCTTDHISAAGPWLKYKGH----LDNISNNTLI 587 (745)
T ss_pred CCceEEeCCCCCCCC---CCCCCCCC-----CcCCccCCeEEEEECCCcChhcccccchhHhhcCC----hhhhhcceec
Confidence 445678999999998 43 34321 334455 677 7899999999999998 8887763 5667788876
Q ss_pred CCCCCccc----cccccCCcc---------cc---eeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchh
Q 025777 112 GLPATYTT----RFIDENETK---------TK---YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSV 175 (248)
Q Consensus 112 ~l~~~f~~----r~~~~G~~~---------~~---~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~i 175 (248)
+..+.+.. .+.+.|+.. +. ..|||||+|||||||||||+++++++||+||||+||+|||++||+
T Consensus 588 ~~~n~~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nli 667 (745)
T TIGR01340 588 GAVNAETGEVNKAYDLDGSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLK 667 (745)
T ss_pred ccccccCCceeEEEcCCCCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhh
Confidence 42111100 011122221 01 159999999999999999999999999999999999999999999
Q ss_pred hcCceeeeec-chhhhhhcCCCCEEEEE-ccC-------cEEE--e-CCCC--eEEEEeeCC-C-hHHHHHhCCHHHHH
Q 025777 176 ATGEIYPLDS-EARLCEECSTGDVVTIE-IAE-------SRLI--N-HTTG--KEYKLKPIG-D-LGPVIDAGGIFAYA 238 (248)
Q Consensus 176 n~GlilPL~~-~~~~~~~~~~Gd~I~ID-L~~-------~~v~--~-~~~G--~~~~~~~~~-~-~~~ii~aGGll~y~ 238 (248)
|+| +|||++ ++.+++.++.||++++. +++ +.+. . +.+| .+|.+.... + +.+++++||+|||+
T Consensus 668 n~G-ilpl~~~~~~~~~~i~~gd~~~~~~l~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~lt~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 668 KQG-VLPLTFANEADYDKIQPGDEVATLNLYEMLKNGGGGEVDLRVTKKNGKVFEIKLKHTVSKDQIGFFKAGSALNLM 745 (745)
T ss_pred hcC-ceeEEecCCccHhhcCCCCEEEEcChhhccccCCCCeEEEEEEeCCCcEEEEEEEeeCCHHHHHHHHcCCcccCC
Confidence 999 789987 46678889999998883 421 1232 2 2234 455555433 2 68999999999985
No 25
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=3.2e-35 Score=297.65 Aligned_cols=202 Identities=25% Similarity=0.358 Sum_probs=150.8
Q ss_pred ccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCCCC
Q 025777 32 LKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVPSN 98 (248)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~~~ 98 (248)
+..|.+..|+|+|.|+|++ +++ ..+++ .+...+.+ +| .++||+|+||||+||+ ||..+...
T Consensus 591 ~~~~~~~~~~w~~~Styi~---~pp~f~~~~---~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~ 664 (858)
T TIGR02333 591 TQSAVSPLYDWRPMSTYIR---RPPYWEGAL---AGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLP 664 (858)
T ss_pred cccCcCCCccCCCCCceec---CCCCccCCC---CcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCC
Confidence 6778899999999999999 555 66552 33345555 67 6889999999999874 99999999
Q ss_pred chhhHHHhh----h--------hhcCC------------CCCccccccccCCccc------ce------eEEEecCccCC
Q 025777 99 PDEYEKLGS----Y--------ALIGL------------PATYTTRFIDENETKT------KY------KIIIAGGNFGC 142 (248)
Q Consensus 99 p~d~~~l~~----~--------a~~~l------------~~~f~~r~~~~G~~~~------~~------~IIVaG~NFG~ 142 (248)
|.|++.||. | ++.++ .+.| +++.+.|+..+ .| .|||||+||||
T Consensus 665 ~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~~~g~~~~g~~-t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~ 743 (858)
T TIGR02333 665 EEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDGSVKQGSL-ARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQ 743 (858)
T ss_pred hhhcccccccccchHHHhhcccccchhhhhhccccCccccCce-eEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCC
Confidence 999999875 1 22221 1223 44555665542 11 79999999999
Q ss_pred CCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhh--cCCCCEEEE--EccCc-E--EE-eCCC
Q 025777 143 GSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEE--CSTGDVVTI--EIAES-R--LI-NHTT 213 (248)
Q Consensus 143 GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~--~~~Gd~I~I--DL~~~-~--v~-~~~~ 213 (248)
|||||||+|+++++||++|||+||+|||++||+|+| +|||++. ...++. +...|.++| ++..+ . ++ .+.+
T Consensus 744 GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~~~G-~lpl~f~~~~~~~~l~l~g~e~~~i~~~~~p~~~~~v~~~~~~ 822 (858)
T TIGR02333 744 GSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVGMG-VLPLEFKPGTNRHTLGLDGTETFDVVGEITPRADLTLVVTRKN 822 (858)
T ss_pred CCcHHHHHHHHHHhCceEEEEccHHHHHHhhhhhcC-cceEEeCCCCChhhcCCCCCeeEEeccCCCCCCeEEEEEEeCC
Confidence 999999999999999999999999999999999999 7999864 345666 456677777 23222 2 22 2345
Q ss_pred Ce--EEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777 214 GK--EYKLKPIGD---LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 214 G~--~~~~~~~~~---~~~ii~aGGll~y~kk~ 241 (248)
|+ +|.+....+ +.+++++||+|||+.++
T Consensus 823 g~~~~~~~~~r~dt~~ei~y~~~GgiL~~v~~~ 855 (858)
T TIGR02333 823 GEKLEVPVTCRLDTAEEVSVYEAGGVLQRFAQD 855 (858)
T ss_pred CCEEEEEEEEEcCCHHHHHHHHcCCHHHHHHHH
Confidence 64 455555543 57999999999998764
No 26
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=9.9e-36 Score=248.44 Aligned_cols=124 Identities=26% Similarity=0.332 Sum_probs=98.9
Q ss_pred ecCCCCCcccccccc-ccccCCCCchhhHHHhhhhhcCCCCCcccc-----ccccCCcc-----------cc-eeEEEec
Q 025777 76 VVGDNIDTDQIIPAE-YLTLVPSNPDEYEKLGSYALIGLPATYTTR-----FIDENETK-----------TK-YKIIIAG 137 (248)
Q Consensus 76 ~lgDnIdTD~IiPa~-~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r-----~~~~G~~~-----------~~-~~IIVaG 137 (248)
|+.+||+||||+||+ ||+.++. .+.+++|+|++.+..|..+ ....|+.. .+ ..|||||
T Consensus 1 k~~g~~tTDhI~pag~~l~~R~~----l~~is~~~~~~a~n~~~~~~~~~~~~~~g~~~~~~~~A~~yk~~g~~~iIVaG 76 (149)
T cd01578 1 KAKGKCTTDHISAAGPWLKYRGH----LDNISNNLLIGAINAENGKANSVKNQVTGEYGPVPDTARDYKAHGIKWVVIGD 76 (149)
T ss_pred CCCCccCcccccCCCcccccccC----HHHHHHHHhhhhhhhhccccccccccCCCcccchHHHHHHHHHcCCCeEEEcc
Confidence 467899999999998 8888764 7889999999833222100 01111110 11 2699999
Q ss_pred CccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeec-chhhhhhcCCCCEEEE-Ecc
Q 025777 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDS-EARLCEECSTGDVVTI-EIA 204 (248)
Q Consensus 138 ~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~-~~~~~~~~~~Gd~I~I-DL~ 204 (248)
+|||||||||||+|+++++||+||||+||+|||++||+|+| +|||++ ++.+++.++.||+|+| +++
T Consensus 77 ~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~G-ilpl~f~~~~~~~~i~~gd~i~i~~l~ 144 (149)
T cd01578 77 ENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQG-LLPLTFADPADYDKIHPDDKVDILGLT 144 (149)
T ss_pred CccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcC-CceEEecChHHHHhcCCCCEEEEecCc
Confidence 99999999999999999999999999999999999999999 789975 5678899999999999 454
No 27
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=100.00 E-value=1.6e-35 Score=243.17 Aligned_cols=112 Identities=22% Similarity=0.311 Sum_probs=94.5
Q ss_pred EecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCcccc------ccccCCcccceeEEEecCccCCCCCcCc
Q 025777 75 YVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTR------FIDENETKTKYKIIIAGGNFGCGSSREH 148 (248)
Q Consensus 75 ~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r------~~~~G~~~~~~~IIVaG~NFG~GSSREh 148 (248)
++++||||||+|+|++|+.. ++.+..|+|+++++.|... ...+|. .|+|+|+||||||||||
T Consensus 1 ~~~gddIdTD~i~P~~y~~~-------~~~~~~ha~~~l~~~f~~~~~~~~~~~~~g~-----~ilvaG~nFG~GSSRe~ 68 (131)
T cd01576 1 FKVPGETNTDDLSPAPDAWS-------RPDIPLHALAMLKNKREGEIVAIAQLKPKGH-----PVAYVGDVVGTGSSRKS 68 (131)
T ss_pred CcCCCCCchhcccChhhcCC-------cchHHHHHhccCCcccCchhhhhhhcccCCC-----eEEEECCceeeccchHH
Confidence 47899999999999999863 3468889999998887431 233342 49999999999999999
Q ss_pred HhhhHH------------hcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEE
Q 025777 149 APVALG------------AAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIE 202 (248)
Q Consensus 149 Aa~al~------------~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~ID 202 (248)
|+++|+ .+|++||||+||+|||||||+|+| ++|++.+ ++.+++||+|+||
T Consensus 69 A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~G-l~~i~~~---~~~~~~GD~l~vD 130 (131)
T cd01576 69 ATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSG-ALPIQLD---VSVLDMGDILNID 130 (131)
T ss_pred HHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcC-CceEEeC---HHHcCCCCEEEeC
Confidence 999998 779999999999999999999999 5677654 5668999999987
No 28
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-34 Score=280.60 Aligned_cols=207 Identities=28% Similarity=0.357 Sum_probs=158.4
Q ss_pred CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEE-eEE-EecCCCCCcccccccc----------ccccCC
Q 025777 30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFH-GLC-YVVGDNIDTDQIIPAE----------YLTLVP 96 (248)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~-G~v-~~lgDnIdTD~IiPa~----------~l~~~~ 96 (248)
..|+.|+..+|+|+|+|+|+. .++ +.++.+++..+..+. ..| +.|||.|+||||+||+ ||..+.
T Consensus 627 n~L~~p~~~Ly~Wd~~STYI~---~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg 703 (892)
T KOG0452|consen 627 NQLEVPSSKLYPWDPKSTYIK---EPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERG 703 (892)
T ss_pred hhccCCccceeccCCCCceec---CCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcC
Confidence 568899999999999999999 666 899999988877774 466 6789999999999995 899999
Q ss_pred CCchhhHHHhh------------hhhcCCC------CCccccccccCCccc------ce------eEEEecCccCCCCCc
Q 025777 97 SNPDEYEKLGS------------YALIGLP------ATYTTRFIDENETKT------KY------KIIIAGGNFGCGSSR 146 (248)
Q Consensus 97 ~~p~d~~~l~~------------~a~~~l~------~~f~~r~~~~G~~~~------~~------~IIVaG~NFG~GSSR 146 (248)
.+|+|++.||+ |+++++. .+-.+-+++.||..+ +| .||+||+.|||||||
T Consensus 704 ~tprdFNsYGsRRGND~vMaRGTFANIrlvNkl~~k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSR 783 (892)
T KOG0452|consen 704 LTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLLSKVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSR 783 (892)
T ss_pred CChhhccccccccCchhhhhcccchhhHHHHHHhcccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCcc
Confidence 99999999987 3333221 111134566776643 12 799999999999999
Q ss_pred CcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchh-hhhh--cCCCCEEEEEccC------cEEEe-CCCCeE
Q 025777 147 EHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR-LCEE--CSTGDVVTIEIAE------SRLIN-HTTGKE 216 (248)
Q Consensus 147 EhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~-~~~~--~~~Gd~I~IDL~~------~~v~~-~~~G~~ 216 (248)
+||++++..+||+|||||||+|||+.|++.+| |+||++.+. ..+. +.-.+..+|.+.+ +.|.+ .++|+.
T Consensus 784 DWAAKGP~LlGvKAViaeS~ErIHrsnLvGmG-IiPl~f~~Ge~AdtLgLtG~E~yti~lP~~~lkPgq~i~v~~dtGk~ 862 (892)
T KOG0452|consen 784 DWAAKGPFLLGVKAVIAESYERIHRSNLVGMG-IIPLQFLPGEDADTLGLTGRERYTIHLPENILKPGQDITVTTDTGKV 862 (892)
T ss_pred chhhcCchhhhhHHHHHHHHHHHHhhccccce-eeeeeecCCCChhhcCcccceeEEEECCcccCCCCceEEEEecCCcE
Confidence 99999999999999999999999999999999 899986432 1221 2222334444322 12222 236999
Q ss_pred EEEeeCCC---hHHHHHhCCHHHHHHH
Q 025777 217 YKLKPIGD---LGPVIDAGGIFAYARK 240 (248)
Q Consensus 217 ~~~~~~~~---~~~ii~aGGll~y~kk 240 (248)
|.+...+| ++.++++||||||+.+
T Consensus 863 F~~~~rFdteVeltyy~~GGiL~y~iR 889 (892)
T KOG0452|consen 863 FVCTLRFDTEVELTYYKNGGILNYMIR 889 (892)
T ss_pred EEEEEEecceEEEEEEecCCcHHHHHh
Confidence 99888875 4789999999999643
No 29
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=2e-33 Score=282.56 Aligned_cols=205 Identities=24% Similarity=0.310 Sum_probs=149.3
Q ss_pred CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccc----------ccccccCC
Q 025777 30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIP----------AEYLTLVP 96 (248)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiP----------a~~l~~~~ 96 (248)
..+..|++..+.|.+.++|++ +++ .....+...+ ++| |+ .+++|+|+||||+| ++||....
T Consensus 598 ~~~~~~~~~~y~w~~~styi~---~pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~g 671 (861)
T COG1048 598 NAIEVPEGPLYDWPNISTYIR---LPPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHG 671 (861)
T ss_pred ccccCCCcCcccCCCcCcccc---CCCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcC
Confidence 347789999999999999999 666 7777777666 555 66 67899999999999 45888888
Q ss_pred CCchhhHHHhh----------hhhcC--C-------CCCccccccccCCccc---------ceeEEEecCccCCCCCcCc
Q 025777 97 SNPDEYEKLGS----------YALIG--L-------PATYTTRFIDENETKT---------KYKIIIAGGNFGCGSSREH 148 (248)
Q Consensus 97 ~~p~d~~~l~~----------~a~~~--l-------~~~f~~r~~~~G~~~~---------~~~IIVaG~NFG~GSSREh 148 (248)
..+.|++.|+. -+|.. + .++| +++.+.|++++ ...|||||+|||.||||||
T Consensus 672 v~~~dfNsygsrrgnhevm~r~tfaNir~~n~~~~~~gg~-t~~~p~g~iydaa~~yk~~g~p~vvvaG~~YG~GSSRdw 750 (861)
T COG1048 672 VERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGEGGY-TIHQPSGEIYDAAMKYKEEGIPLVVVAGKNYGTGSSRDW 750 (861)
T ss_pred CCcccccchhcccccHHHhhhhhhcccccccccccccCcc-eeecCCchhHHHHHHHHHcCCCeEEEeeccCCCCchHHH
Confidence 87888888874 12221 1 1233 45555564421 1389999999999999999
Q ss_pred HhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchh-hhhhcCCCCEEEEE--ccC-----cE--EE-eCCCCeEE
Q 025777 149 APVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR-LCEECSTGDVVTIE--IAE-----SR--LI-NHTTGKEY 217 (248)
Q Consensus 149 Aa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~-~~~~~~~Gd~I~ID--L~~-----~~--v~-~~~~G~~~ 217 (248)
||++++.+||+|||||||+|||++|++++| +|||++.+. .++.+.-.+..+|| ..+ .+ |. .+.+|.+.
T Consensus 751 AAkg~~lLGv~AVIAeSFeRIHrSNLi~mG-vLPLqf~~~~~~~~l~l~g~e~~~i~~~~~~~p~~~~~v~~~~~dg~~~ 829 (861)
T COG1048 751 AAKGPRLLGVKAVIAESFERIHRSNLIGMG-VLPLQFPNGETYDKLGLDGEETIDIGGLENLKPGATVTVTVTRGDGPVE 829 (861)
T ss_pred HhhCchhcCeeeeeehhHHHHHHhhcccce-eeeeeccCCCChhhcCCCCceeEeecccccCCCCceEEEEEEcCCCceE
Confidence 999999999999999999999999999999 899998643 45665443333443 222 12 22 23355443
Q ss_pred EEee--CCC---hHHHHHhCCHHHHHHHhC
Q 025777 218 KLKP--IGD---LGPVIDAGGIFAYARKTG 242 (248)
Q Consensus 218 ~~~~--~~~---~~~ii~aGGll~y~kk~g 242 (248)
.+.. ..+ +.+++++||+|||++++-
T Consensus 830 ~~~~~~r~dt~~E~~y~k~GGiL~~v~~~~ 859 (861)
T COG1048 830 EFPVLCRIDTAEEIEYYKAGGILNYVKRDL 859 (861)
T ss_pred EEeeeeecCCHHHHHHHHcCchHHHHHHHh
Confidence 3332 222 679999999999998753
No 30
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=100.00 E-value=1.4e-33 Score=217.51 Aligned_cols=86 Identities=45% Similarity=0.663 Sum_probs=78.9
Q ss_pred ecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHh
Q 025777 76 VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGA 155 (248)
Q Consensus 76 ~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~ 155 (248)
+++||||||||+|++ + +|||+|+|||||||||||+|++++
T Consensus 1 ~~~~~~~td~~~p~~----------------------------------~------~iiVaG~nfG~GSSRE~A~~al~~ 40 (88)
T cd00404 1 KVAGNITTDHISPAG----------------------------------P------GVVIGDENYGTGSSREHAALELRL 40 (88)
T ss_pred CcccccccccccCCC----------------------------------C------EEEEecCCeecCCCHHHHHHHHHH
Confidence 468999999999997 2 699999999999999999999999
Q ss_pred cCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhcCCCCEEEEE
Q 025777 156 AGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEECSTGDVVTIE 202 (248)
Q Consensus 156 lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~~~Gd~I~ID 202 (248)
+|+++|||+||+|||+||++|+| ++|++++ ..+++.+++||+|+||
T Consensus 41 ~Gi~aVia~sfa~If~rN~~n~G-ll~l~~~~~~~~~~i~~gd~l~id 87 (88)
T cd00404 41 LGGRAVIAKSFARIFFRNLVDQG-LLPLEFADPEDYLKLHTGDELDIY 87 (88)
T ss_pred hCCCEEEEeCHHHHHHhhHHhcC-CceEEecCcchhhhcCCCCEEEeC
Confidence 99999999999999999999999 6888764 4578889999999987
No 31
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.98 E-value=2.3e-33 Score=237.89 Aligned_cols=110 Identities=37% Similarity=0.538 Sum_probs=89.8
Q ss_pred ecCCCCCcccccccc----------ccccCCCCchhhHHHhhh------------hhcCC--------CCCccccccccC
Q 025777 76 VVGDNIDTDQIIPAE----------YLTLVPSNPDEYEKLGSY------------ALIGL--------PATYTTRFIDEN 125 (248)
Q Consensus 76 ~lgDnIdTD~IiPa~----------~l~~~~~~p~d~~~l~~~------------a~~~l--------~~~f~~r~~~~G 125 (248)
.|||+|+||||+||+ ||......|.|++.|+.. ++..+ .+.+ +++.+.|
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~-t~~~p~g 79 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGT-THHPPTG 79 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCc-EEECCCC
Confidence 379999999999998 999889999999999772 22111 1233 4455666
Q ss_pred Ccccc------e------eEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch
Q 025777 126 ETKTK------Y------KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187 (248)
Q Consensus 126 ~~~~~------~------~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~ 187 (248)
+..+- | .|||||+|||||||||||+|+++++||+||||+||+|||++||+|+| +|||++.+
T Consensus 80 ~~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~G-llpl~~~~ 152 (171)
T cd01580 80 EVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMG-ILPLQFPP 152 (171)
T ss_pred cEeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcC-cceEEeCC
Confidence 55321 1 59999999999999999999999999999999999999999999999 78998643
No 32
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.97 E-value=9.7e-33 Score=226.98 Aligned_cols=115 Identities=41% Similarity=0.607 Sum_probs=84.6
Q ss_pred CCCceEEeEEEe-cCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcc---------c--cee
Q 025777 65 EPTATFHGLCYV-VGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK---------T--KYK 132 (248)
Q Consensus 65 ~~~~~i~G~v~~-lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~---------~--~~~ 132 (248)
+.+.+.+|.+.. +.+|+|||+|+|++|+.... ...++.++|.+...... ...+.++.. + +.+
T Consensus 2 ~~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~-----~~~l~~~l~~~~r~~~~-~~~~~~~~~~f~~~~~~~~~~~~~ 75 (131)
T PF00694_consen 2 EKFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFA-----NTGLGNILFDDWRYGKT-GYLPDGEKPDFYLNAPRYKVEGGD 75 (131)
T ss_dssp CCCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCG-----CTTTGGGTTTTSCBSSE-EETTTTEEETHHHHHHHHHHTTTE
T ss_pred CccEEEeCccccccccccccccccHHHHhcccc-----CcchhhhhccCcceeee-eccccCcCCcchhchhhhcccCCC
Confidence 356788999865 48999999999999998753 46788888865544331 111111110 1 235
Q ss_pred EEE-ecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc
Q 025777 133 III-AGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE 186 (248)
Q Consensus 133 IIV-aG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~ 186 (248)
||| +|+|||||||||||+||++++||+||||+||+|||++||+|+| ||||+++
T Consensus 76 ilv~~g~nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~G-llpl~~~ 129 (131)
T PF00694_consen 76 ILVVGGENFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNG-LLPLEFP 129 (131)
T ss_dssp EEEEE-SSBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT--EEEEES
T ss_pred EEEECCCcccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCC-ceEEEec
Confidence 554 5699999999999999999999999999999999999999999 7999865
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.97 E-value=2.9e-30 Score=261.08 Aligned_cols=171 Identities=22% Similarity=0.265 Sum_probs=135.4
Q ss_pred CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCc-ccceeEEEecCccCC
Q 025777 64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET-KTKYKIIIAGGNFGC 142 (248)
Q Consensus 64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~-~~~~~IIVaG~NFG~ 142 (248)
+..+++++-.||++..++|||.++|+...++++..|-....|-+.-+.++.+... .. .+. .+++.|+|+|+||||
T Consensus 229 ~~~~~~i~~~vfkv~ge~ntddlspa~~a~sr~diplha~~m~~~~~~~~~~~~~--~i--~~lk~~g~~iivvG~nfG~ 304 (938)
T PLN00094 229 PPVPEKITVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNPREGIQGPIA--QI--EELKKKGHPLAYVGDVVGT 304 (938)
T ss_pred CCCcceeEEEEEEecCcCccccCCCcccccCCCCchhHHHHHhcCCCCCcccHHH--HH--HHHHHcCCceEEECCceec
Confidence 3456788999999999999999999999888864442222222221211111110 00 011 124589999999999
Q ss_pred CCCcCcHhhhH-------------HhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEE
Q 025777 143 GSSREHAPVAL-------------GAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLI 209 (248)
Q Consensus 143 GSSREhAa~al-------------~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~ 209 (248)
|||||||+.++ +.+|+.+ ||+|||||||||++|.| ++|++.+ .+.+++||+|+||+.+|+|+
T Consensus 305 GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G-~~~Ie~~---v~~i~~GD~I~id~~~G~I~ 379 (938)
T PLN00094 305 GSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSG-ALPIEMD---VKNLNMGDVIDIYPYEGVVK 379 (938)
T ss_pred CCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcC-CceEecc---HhhcCCCCEEEEEcCCCEEE
Confidence 99999999999 9999999 99999999999999999 5677654 67799999999999999999
Q ss_pred eCCCCeEE-EEeeCCC-hHHHHHhCCHHHHHHHhCC
Q 025777 210 NHTTGKEY-KLKPIGD-LGPVIDAGGIFAYARKTGM 243 (248)
Q Consensus 210 ~~~~G~~~-~~~~~~~-~~~ii~aGGll~y~kk~g~ 243 (248)
++++|+++ .+++.++ .+++++|||++||++.+|+
T Consensus 380 n~~~g~~~~~f~~~p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 380 RHGTDEVITTFSLKTPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred ecCCCeEEEeccCCChHHHHHHHcCCcHhhhhcccc
Confidence 98889999 8999988 6899999999999998765
No 34
>PRK14812 hypothetical protein; Provisional
Probab=99.94 E-value=5.4e-27 Score=190.07 Aligned_cols=88 Identities=26% Similarity=0.439 Sum_probs=75.3
Q ss_pred CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhh---hcCCCCEEEEEccCcEEEeCCCCeEEE
Q 025777 142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE---ECSTGDVVTIEIAESRLINHTTGKEYK 218 (248)
Q Consensus 142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~---~~~~Gd~I~IDL~~~~v~~~~~G~~~~ 218 (248)
||||||||+|||+.+||+||||+||++||++||+|+| +||++.+++..+ .+++|++|+|||++++|++. +++|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnG-llpi~~~~~~~~~l~~~~~g~~i~vDL~~~~v~~~--~~~~~ 78 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNG-MLPIVQPREVREKLAQLKPTDQVTVDLEQQKIISP--VEEFT 78 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCC-CCcccCCHHHHHHHhccCCCCEEEEEcCCCEEEcC--CeEEE
Confidence 9999999999999999999999999999999999999 678887766655 45799999999999999874 47899
Q ss_pred EeeCCChHHHHHhC
Q 025777 219 LKPIGDLGPVIDAG 232 (248)
Q Consensus 219 ~~~~~~~~~ii~aG 232 (248)
|++.+..+..+-+|
T Consensus 79 f~i~~~~~~~Ll~G 92 (119)
T PRK14812 79 FEIDSEWKHKLLNS 92 (119)
T ss_pred EEECHHHHHHHHhC
Confidence 98876544444444
No 35
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=99.90 E-value=5.7e-24 Score=207.99 Aligned_cols=175 Identities=22% Similarity=0.314 Sum_probs=126.1
Q ss_pred CCCCCCceEEeE------E-EecCCCCCcccccccc-ccccCCCC------c----hhhHHHhhhhhcCC-CCCcccc--
Q 025777 62 ATKEPTATFHGL------C-YVVGDNIDTDQIIPAE-YLTLVPSN------P----DEYEKLGSYALIGL-PATYTTR-- 120 (248)
Q Consensus 62 ~~~~~~~~i~G~------v-~~lgDnIdTD~IiPa~-~l~~~~~~------p----~d~~~l~~~a~~~l-~~~f~~r-- 120 (248)
.-++++..|.|. | .++...+|||||+-++ ||+.+++- - -..|....++++.+ +.+|...
T Consensus 563 qlLepF~~w~gkd~edl~ilikv~gkCttDhIsaaGpwlkY~Ghl~nisnn~~igain~En~e~n~~~n~~~ge~~~vp~ 642 (778)
T KOG0453|consen 563 QLLEPFDKWDGKDLEDLKILIKVKGKCTTDHISAAGPWLKYRGHLENISNNDLIGAINKENGEANCVKNYLTGEFGTVPD 642 (778)
T ss_pred hhcCCCCcccccccccceEEEEEecccCccccccCCcceeccchhhhcccchhhhhcchhhhhhhhhhhccccccCCcCc
Confidence 456788888886 3 6788999999999998 77765510 0 01223333444332 4444211
Q ss_pred ----ccccCCcccceeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeec-chhhhhhcCC
Q 025777 121 ----FIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDS-EARLCEECST 195 (248)
Q Consensus 121 ----~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~-~~~~~~~~~~ 195 (248)
+...| .-+|+|+++|||.|||||||+..++.+|+++||.+||+|||.+|++|+| +|||++ ++++|+++++
T Consensus 643 ~~~~yk~~g----~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqg-lLpLtfanpadydKi~~ 717 (778)
T KOG0453|consen 643 TARDYKKHG----IRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQG-LLPLTFANPADYDKIRP 717 (778)
T ss_pred hhhhHHhcC----ceeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcc-eeeeeccCHHHhhhcCh
Confidence 11111 1179999999999999999999999999999999999999999999999 799997 6789999999
Q ss_pred CCEEEEE-cc---Cc---E-EEeCCCCeEEEE--eeCCC--hHHHHHhCCHHHHHHHh
Q 025777 196 GDVVTIE-IA---ES---R-LINHTTGKEYKL--KPIGD--LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 196 Gd~I~ID-L~---~~---~-v~~~~~G~~~~~--~~~~~--~~~ii~aGGll~y~kk~ 241 (248)
.|.+++. |. .+ + ++...+|+++.. .+... +.+++++|.-+|+++..
T Consensus 718 ~d~~~~~~L~~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e~ 775 (778)
T KOG0453|consen 718 ADKVSIKGLTRRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKEL 775 (778)
T ss_pred hcccchhhhhhhcCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHHh
Confidence 9998883 32 22 2 233446776554 44443 56899999999998763
No 36
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=99.66 E-value=1.1e-16 Score=138.70 Aligned_cols=159 Identities=23% Similarity=0.264 Sum_probs=101.2
Q ss_pred EEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhh
Q 025777 73 LCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVA 152 (248)
Q Consensus 73 ~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~a 152 (248)
.||++.+++|||+++||...++|+ |..--+...+..-.++. ....+.= ..+++.++..|+--|.||||..|...
T Consensus 2 ~vfkV~GEtnTDdLSPa~dA~SRp----DiPLHA~aMl~~~~~~~-l~~i~~l-k~kg~~la~vGdvvGtGSSRKSa~NS 75 (204)
T PF06434_consen 2 TVFKVPGETNTDDLSPAPDAWSRP----DIPLHALAMLKNRRPGP-LEQIEEL-KEKGHPLAYVGDVVGTGSSRKSATNS 75 (204)
T ss_dssp EEEEEEEEEEHHHHS-GGGGGGTT----SHHHHHCCTT-S-BTTS-HHHHHHH-HTTSS-EEEEEEEEEES---THHHHH
T ss_pred eEEEeCCccccCcCCccccccCCC----CchHHHHHhcccccccH-HHHHHHH-HHcCCcEEEecCccccCcccchhhhh
Confidence 468899999999999999988875 44433333333222221 0000000 01245788889999999999999998
Q ss_pred HHhcC------------ccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeE-EEE
Q 025777 153 LGAAG------------CSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKE-YKL 219 (248)
Q Consensus 153 l~~lG------------I~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~-~~~ 219 (248)
+.... ...|++..+|+|||+-+-..| .||++.+ ...++.||+|+|+..++++++. +|+. .+|
T Consensus 76 vlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsG-aLPIe~d---v~~l~~Gdvi~I~p~~gki~~~-~gev~~~f 150 (204)
T PF06434_consen 76 VLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSG-ALPIECD---VSSLNTGDVITIYPYEGKIYKE-NGEVISTF 150 (204)
T ss_dssp HHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT--EEEE------TT--TT-EEEEETTTTEEEET-T--EEEE-
T ss_pred hhhhccCCCCCCCccCccCeEECCEEcceEeccccccC-CceEEEe---ccccCCCcEEEEecCCcEEECC-CCCEEEEe
Confidence 86542 257899999999999999999 7999875 5678999999999999999985 4554 446
Q ss_pred eeCCC-hHHHHHhCCHHHHHHHhC
Q 025777 220 KPIGD-LGPVIDAGGIFAYARKTG 242 (248)
Q Consensus 220 ~~~~~-~~~ii~aGGll~y~kk~g 242 (248)
+..++ .++-+||||.++++-.++
T Consensus 151 ~l~p~~l~DevrAGGri~LiiGR~ 174 (204)
T PF06434_consen 151 ELKPQTLLDEVRAGGRIPLIIGRG 174 (204)
T ss_dssp --S-TCHHHHHHHTSHHHHHHHHH
T ss_pred ecCchhHHHHHhcCCcEEEEechH
Confidence 66666 569999999999986553
No 37
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=99.20 E-value=2.2e-11 Score=120.46 Aligned_cols=169 Identities=23% Similarity=0.256 Sum_probs=122.7
Q ss_pred CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccc-cCCc-ccceeEEEecCccC
Q 025777 64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFID-ENET-KTKYKIIIAGGNFG 141 (248)
Q Consensus 64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~-~G~~-~~~~~IIVaG~NFG 141 (248)
++.+..++-.||++..+++||.++|+.-.++++..| -|++.++.+.-+...++ -.+. .++..++..|.-.|
T Consensus 160 p~v~e~i~vtvFkv~getnTDdLSPa~dA~sRpDip-------LHalaMlk~~~~gg~i~~i~~lk~Kg~~vayvgdvvG 232 (852)
T COG1049 160 PALPEKITVTVFKVAGETNTDDLSPAPDAWSRPDIP-------LHALAMLKNAREGGPIKQIEALKQKGHPVAYVGDVVG 232 (852)
T ss_pred cccCceeEEEEEEecCccccccCCCCcccccCCCcc-------hHHHhhccccccCChHHHHHHHhhcCceEEEeccccc
Confidence 345678888899998899999999999888775333 23333343322110000 0001 12347888899999
Q ss_pred CCCCcCcHhhhHHhc------------CccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEE
Q 025777 142 CGSSREHAPVALGAA------------GCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLI 209 (248)
Q Consensus 142 ~GSSREhAa~al~~l------------GI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~ 209 (248)
.||||..|....... ....|+..-.++|||+.+-..| -||++.+ ...++.||+|+|+--+++++
T Consensus 233 tGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~G-alPI~~d---v~~l~~Gdvi~i~py~gki~ 308 (852)
T COG1049 233 TGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAG-ALPIEVD---VSNLEMGDVIDIYPYEGKIR 308 (852)
T ss_pred cCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcC-CCceEee---eccccccceEEeeccCCeee
Confidence 999999998744322 2246777889999999999999 7999875 55789999999999999999
Q ss_pred eCCCCeEEE-EeeCCC-hHHHHHhCCHHHHHHHhCC
Q 025777 210 NHTTGKEYK-LKPIGD-LGPVIDAGGIFAYARKTGM 243 (248)
Q Consensus 210 ~~~~G~~~~-~~~~~~-~~~ii~aGGll~y~kk~g~ 243 (248)
++++|+++. |...++ .++-+||||.++.+-.+|+
T Consensus 309 ~~~~ge~v~~f~lkt~~lldevrAGgripliiGrgL 344 (852)
T COG1049 309 NNNTGEVVATFSLKTDVLLDEVRAGGRIPLIIGRGL 344 (852)
T ss_pred ccCCCcEEEEeecCchhHHHHHhcCCceeEEEcccc
Confidence 988787655 555555 5899999999998766554
No 38
>PRK05849 hypothetical protein; Provisional
Probab=47.02 E-value=1e+02 Score=32.72 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=60.0
Q ss_pred CCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCC
Q 025777 66 PTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSS 145 (248)
Q Consensus 66 ~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSS 145 (248)
.+....|+|.++.+. + +...++.-|.... .+|+|++-|...- .-||.. .|+.
T Consensus 687 s~g~v~g~v~v~~~~-~-~~~~~G~Ilv~~~----------------tdPg~~~lf~~~i-----~g~Vte-----~Gg~ 738 (783)
T PRK05849 687 TQKRVEATVADLDND-N-DDDLEGKIVCIEN----------------ADPGYDWLFTKGI-----AGLITC-----YGGA 738 (783)
T ss_pred cCCEEEEEEEEecCh-h-hcCCCCCEEEeCC----------------CCccchHHHhhhe-----eEEEEc-----CCCc
Confidence 577888998776554 2 3444555554322 3566655443110 013332 4677
Q ss_pred cCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEE
Q 025777 146 REHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLI 209 (248)
Q Consensus 146 REhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~ 209 (248)
--|++..-+.+||+|||. .| ...++.++.|+.|.||...|+|+
T Consensus 739 ~SH~AI~ARe~gIPavvg-------------~~--------~~~~~~~~~g~~v~vDg~~G~v~ 781 (783)
T PRK05849 739 NSHMAIRAAELGLPAVIG-------------VG--------EELFEKWLKAKRILLDCASQRIE 781 (783)
T ss_pred ccHHHHHHHHcCCCEEEc-------------cC--------cchhhhccCCCEEEEECCCCEEE
Confidence 779999999999999974 12 01145678899999999887765
No 39
>PRK08296 hypothetical protein; Provisional
Probab=44.57 E-value=41 Score=34.62 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=36.6
Q ss_pred CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEe
Q 025777 142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLIN 210 (248)
Q Consensus 142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~ 210 (248)
.|+..-|++..-+.+||.+|+.-. ...+.++.|+.|+||-..|+|+.
T Consensus 555 ~Gg~~SHaAIvARe~GIPaVvgv~----------------------~at~~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 555 IGGVMSHAAIVCREYGLPAVVGTG----------------------NATKRIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred cCCCcchHHHHHHHcCCCEEEcCc----------------------cHhhhcCCCCEEEEECCCCEEEE
Confidence 478888999999999999996311 12456789999999998887764
No 40
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=41.45 E-value=60 Score=23.90 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=26.0
Q ss_pred CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEcc
Q 025777 142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIA 204 (248)
Q Consensus 142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~ 204 (248)
.|+.--|++..-+.+|+.+|+.-.- ..+.++.|+.|+||-.
T Consensus 38 ~Gg~~SH~aIlAr~~giP~ivg~~~----------------------~~~~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 38 EGGPTSHAAILARELGIPAIVGVGD----------------------ATEAIKDGDWVTLDGN 78 (80)
T ss_dssp SSSTTSHHHHHHHHTT-EEEESTTT----------------------HHHHSCTTEEEEEETT
T ss_pred cCCccchHHHHHHHcCCCEEEeecc----------------------HhhccCCCCEEEEECC
Confidence 3566667777777777777764431 2445677888888754
No 41
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=41.41 E-value=24 Score=29.67 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=27.3
Q ss_pred eeEEEecCccCCCCCcCcHhhhHHhcC----ccEEEechh
Q 025777 131 YKIIIAGGNFGCGSSREHAPVALGAAG----CSAVVAESY 166 (248)
Q Consensus 131 ~~IIVaG~NFG~GSSREhAa~al~~lG----I~aVIAeSF 166 (248)
...||+|.||-+|.-|+.-+.-|+.+| +.+++.+.+
T Consensus 107 ~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~ 146 (157)
T PF06574_consen 107 VKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPV 146 (157)
T ss_dssp EEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---
T ss_pred ccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCE
Confidence 378999999999999999999998775 667766654
No 42
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=37.52 E-value=61 Score=34.59 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeC
Q 025777 142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINH 211 (248)
Q Consensus 142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~ 211 (248)
.|+.--|++..-+.+||.+|+ | ..+.++.++.||.|+||...|+|+..
T Consensus 822 ~Gg~~sH~aIvare~gIPavv---------------~-------~~~~~~~l~~G~~v~lDg~~G~v~il 869 (871)
T PRK06241 822 VGGLMTHGAVIAREYGIPAVV---------------G-------VENATKLIKDGQRIRVDGTEGYVEIL 869 (871)
T ss_pred CCCcchHHHHHHHhcCCCEEE---------------c-------cccHHhhcCCCCEEEEECCCCEEEEc
Confidence 566667777777777877776 2 12236678999999999988887653
No 43
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=34.80 E-value=48 Score=24.25 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=31.6
Q ss_pred cCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeee
Q 025777 140 FGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184 (248)
Q Consensus 140 FG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~ 184 (248)
.++|.....|. .|...|+.+||+..++.-.++-+...| +-++.
T Consensus 37 ~~~~~~~~~~~-~l~~~~v~~li~~~iG~~~~~~L~~~g-I~v~~ 79 (94)
T PF02579_consen 37 EGGGGGDKIAK-FLAEEGVDVLICGGIGEGAFRALKEAG-IKVYQ 79 (94)
T ss_dssp CSSCHSTHHHH-HHHHTTESEEEESCSCHHHHHHHHHTT-SEEEE
T ss_pred cccccchhHHH-HHHHcCCCEEEEeCCCHHHHHHHHHCC-CEEEE
Confidence 34444444444 445599999999999999999999999 55454
No 44
>PRK03955 hypothetical protein; Reviewed
Probab=34.77 E-value=1.1e+02 Score=25.53 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=29.6
Q ss_pred EEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEe
Q 025777 160 AVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLIN 210 (248)
Q Consensus 160 aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~ 210 (248)
|+|-+.=..|----++=.| +|+....+ ++.++.||.|+||-++++|..
T Consensus 81 aiI~~~~~~ils~GaIvAg--IP~V~~~~-~~~l~~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 81 AIINLEAEPIVATGAIISG--IPLVDKVD-ISKLKDGDRVVVDGDEGEVEI 128 (131)
T ss_pred EEEEecCCceeEeeeeecC--CceEcccc-ceecCCCCEEEEeCCCCEEEE
Confidence 5554444333333333336 55654333 778999999999977777764
No 45
>PRK05865 hypothetical protein; Provisional
Probab=28.98 E-value=2e+02 Score=31.00 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=31.4
Q ss_pred CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeC
Q 025777 142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINH 211 (248)
Q Consensus 142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~ 211 (248)
.|+..-|++..-+.+||.+|+. .....+.+++|+.|+||-..|+|...
T Consensus 790 ~Gg~~SH~AIvARe~gIPaVvg----------------------v~~at~~l~dG~~V~vDg~~G~V~~l 837 (854)
T PRK05865 790 LGGPMSHAAVVAREFGFPCVVD----------------------AQGATRFLPPGALVEVDGATGEIHVV 837 (854)
T ss_pred cCCCccHHHHHHHHcCCCEEEc----------------------cccHhhcCCCCCEEEEECCCcEEEEe
Confidence 4555556666666666665542 22235567999999999988877653
No 46
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=27.95 E-value=55 Score=30.84 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=37.4
Q ss_pred eEEEecCccCCCCCcCcHhhhHHhcC---ccEEEechhh-------HHHhhchhhcC
Q 025777 132 KIIIAGGNFGCGSSREHAPVALGAAG---CSAVVAESYA-------RIFFRNSVATG 178 (248)
Q Consensus 132 ~IIVaG~NFG~GSSREhAa~al~~lG---I~aVIAeSFa-------rIf~rN~in~G 178 (248)
.-||+|.+|-+|.-|+-.+.-|+.+| +.+++.+.+. --.=|+++..|
T Consensus 117 k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~g 173 (304)
T COG0196 117 KHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALREG 173 (304)
T ss_pred cEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhcC
Confidence 56999999999999999999998875 6788888665 23446666666
No 47
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=26.01 E-value=76 Score=23.46 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=30.7
Q ss_pred cCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeee
Q 025777 146 REHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184 (248)
Q Consensus 146 REhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~ 184 (248)
..+++..+...|+.+||+.+++.-.++-+.+.| +-++.
T Consensus 50 ~~~~~~~l~~~~v~~vi~~~iG~~a~~~l~~~g-I~v~~ 87 (102)
T cd00562 50 GKLAARLLALEGCDAVLVGGIGGPAAAKLEAAG-IKPIK 87 (102)
T ss_pred chHHHHHHHHCCCcEEEEcccCccHHHHHHHcC-CEEEE
Confidence 456778888899999999999998888888888 44443
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=23.73 E-value=1e+02 Score=22.90 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=24.5
Q ss_pred CcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeee
Q 025777 147 EHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184 (248)
Q Consensus 147 EhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~ 184 (248)
...+.-|...|+.+||+.+++.-.++-+...| +-++.
T Consensus 53 ~~~~~~l~~~~v~~vi~~~iG~~~~~~l~~~g-I~v~~ 89 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGGIGPRALNKLRNAG-IKVYK 89 (103)
T ss_pred hHHHHHHHHcCCCEEEeCCCCcCHHHHHHHCC-CEEEE
Confidence 34444556678888888887777777777777 44443
No 49
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=22.31 E-value=1.4e+02 Score=30.55 Aligned_cols=24 Identities=8% Similarity=0.369 Sum_probs=17.5
Q ss_pred hhhhcCCCCEEEEEccCcEEEeCC
Q 025777 189 LCEECSTGDVVTIEIAESRLINHT 212 (248)
Q Consensus 189 ~~~~~~~Gd~I~IDL~~~~v~~~~ 212 (248)
..+.++.|+.|.||...|.|+...
T Consensus 208 ~~~~~~~G~~vilDg~~G~v~~~P 231 (575)
T PRK11177 208 ITKQVKNGDYLILDAVNNQIYVNP 231 (575)
T ss_pred HHhhccCCCEEEEECCCCEEEECC
Confidence 455678899999998877776543
No 50
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=20.32 E-value=2.2e+02 Score=28.98 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=16.5
Q ss_pred hhhcCCCCEEEEEccCcEEEeC
Q 025777 190 CEECSTGDVVTIEIAESRLINH 211 (248)
Q Consensus 190 ~~~~~~Gd~I~IDL~~~~v~~~ 211 (248)
...++.|+.|.||-..|.|...
T Consensus 208 ~~~~~~G~~v~vDg~~G~v~~~ 229 (565)
T TIGR01417 208 TSQVKNGDTVIIDGVKGIVIFN 229 (565)
T ss_pred HhhCCCCCEEEEECCCCEEEeC
Confidence 4457889999999887777653
No 51
>PF10910 DUF2744: Protein of unknown function (DUF2744); InterPro: IPR021226 This entry is represented by Mycobacteriophage D29, Gp29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.07 E-value=47 Score=27.52 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=31.0
Q ss_pred CcCcHhhhHHhc----CccEEEechhhHHHhhchhhcC
Q 025777 145 SREHAPVALGAA----GCSAVVAESYARIFFRNSVATG 178 (248)
Q Consensus 145 SREhAa~al~~l----GI~aVIAeSFarIf~rN~in~G 178 (248)
-+||+.|+|+.+ |+.+|.-..|.|-.-..+.+.|
T Consensus 13 PeEhflWaL~~lP~~~G~~~it~~~~lr~wS~hLw~cG 50 (125)
T PF10910_consen 13 PEEHFLWALRNLPGPAGAGLITPPGYLRDWSEHLWECG 50 (125)
T ss_pred HHHHHHHHHccCCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 479999999864 8899999999999999999999
Done!