Query 025777
Match_columns 248
No_of_seqs 138 out of 1223
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vba_A Isopropylmalate/citrama 100.0 1.2E-53 4.3E-58 364.8 15.2 163 68-244 3-166 (176)
2 2pkp_A Homoaconitase small sub 100.0 8.4E-53 2.9E-57 358.2 12.4 161 68-244 1-162 (170)
3 1v7l_A 3-isopropylmalate dehyd 100.0 1.7E-50 6E-55 341.9 13.5 153 71-242 4-158 (163)
4 3q3w_A 3-isopropylmalate dehyd 100.0 1.6E-47 5.6E-52 333.1 11.8 155 65-232 5-177 (203)
5 3h5j_A 3-isopropylmalate dehyd 100.0 7.4E-47 2.5E-51 321.3 12.2 156 65-232 5-169 (171)
6 2hcu_A 3-isopropylmalate dehyd 100.0 7.7E-46 2.6E-50 325.0 12.4 155 65-232 19-187 (213)
7 1l5j_A Aconitate hydratase 2; 100.0 5.7E-42 2E-46 347.1 11.9 169 64-242 160-352 (865)
8 2b3y_A Iron-responsive element 100.0 5.3E-41 1.8E-45 341.3 14.9 205 32-241 625-885 (888)
9 1c96_A Mitochondrial aconitase 100.0 6.6E-38 2.3E-42 315.0 15.3 194 37-242 525-751 (753)
10 2hi6_A UPF0107 protein AF0055; 56.3 71 0.0024 25.7 8.9 75 132-210 52-131 (141)
11 2yx6_A Hypothetical protein PH 31.6 35 0.0012 25.6 3.2 37 147-184 53-89 (121)
12 1zym_A Enzyme I; phosphotransf 30.9 51 0.0018 28.7 4.5 22 189-210 208-229 (258)
13 1eo1_A Hypothetical protein MT 26.1 69 0.0023 24.0 4.0 36 148-184 56-91 (124)
14 1o13_A Probable NIFB protein; 23.4 64 0.0022 25.0 3.4 36 148-184 67-102 (136)
15 2wqd_A Phosphoenolpyruvate-pro 23.1 1.3E+02 0.0043 29.4 6.1 47 142-210 185-231 (572)
16 2hwg_A Phosphoenolpyruvate-pro 22.5 1.3E+02 0.0044 29.3 6.0 47 142-210 183-229 (575)
No 1
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-53 Score=364.84 Aligned_cols=163 Identities=35% Similarity=0.691 Sum_probs=146.2
Q ss_pred ceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcC
Q 025777 68 ATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSRE 147 (248)
Q Consensus 68 ~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSRE 147 (248)
+.++|+||+++||||||+|+|++||+.. +++++++|+|++++|+|..+ .++| +|||||+|||||||||
T Consensus 3 ~~i~g~v~~~gdnIdTD~IiPa~~l~~~-----~~~~l~~~~f~~~~p~F~~~-~~~g------~IlVaG~NFG~GSSRE 70 (176)
T 3vba_A 3 SIIKGRVWKFGNNVDTDAILPARYLVYT-----KPEELAQFVMTGADPDFPKK-VKPG------DIIVGGKNFGCGSSRE 70 (176)
T ss_dssp SEEEEEEEECCSSCBHHHHSCGGGTTCC-----SHHHHGGGTTTTTCTTHHHH-CCTT------CEEEECTTBTBSSCCT
T ss_pred ceEEEEEEEeCCCcchhhcCcHHHhCcC-----CHHHHHHhhCcCCCccHHHh-cCCC------CEEEeCCCccCCccHH
Confidence 4689999999999999999999998653 57899999999999999544 3455 7999999999999999
Q ss_pred cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hH
Q 025777 148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LG 226 (248)
Q Consensus 148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~ 226 (248)
||+||++.+|++||||+||||||++||+|+| ++|++.+ ++++.+++||+|+|||++++|++.++|++|.+.+.++ ++
T Consensus 71 hA~~al~~~Gi~aVIA~SFA~If~~N~in~G-l~~i~~~-~~~~~~~~gd~i~idl~~~~v~~~~~g~~~~~~~l~~~~~ 148 (176)
T 3vba_A 71 HAPLGLKGAGISCVIAESFARIFYRNAINVG-LPLIECK-GISEKVNEGDELEVNLETGEIKNLTTGEVLKGQKLPEFMM 148 (176)
T ss_dssp HHHHHHHHTTCCEEEESCBCHHHHHHHHHTT-CCEEECT-THHHHCCTTCEEEEETTTCEEEETTTCCEEECCCCCHHHH
T ss_pred HHHHHHHHhCCcEEEeccHHHHHHhhHHHcC-CCeEEcc-hHHHhcCCCCEEEEECCCCEEEeCCCCeEEEEecCCHHHH
Confidence 9999999999999999999999999999999 5666654 5678899999999999999999887899999998776 78
Q ss_pred HHHHhCCHHHHHHHhCCC
Q 025777 227 PVIDAGGIFAYARKTGMI 244 (248)
Q Consensus 227 ~ii~aGGll~y~kk~g~~ 244 (248)
+++++||++||+|+++..
T Consensus 149 ~ii~aGGli~~~k~~~~~ 166 (176)
T 3vba_A 149 EILEAGGLMPYLKKKMAE 166 (176)
T ss_dssp HHHHHTSHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHhcch
Confidence 999999999999987654
No 2
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.4e-53 Score=358.23 Aligned_cols=161 Identities=34% Similarity=0.652 Sum_probs=144.1
Q ss_pred ceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcC
Q 025777 68 ATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSRE 147 (248)
Q Consensus 68 ~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSRE 147 (248)
+.++|+||+++||||||+|+|++||+.. +++.|++|+|++++|+|..+ .+.| +|||||+|||||||||
T Consensus 1 ~~~~g~v~~~~dnIdTD~IiPa~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~~------~iivaG~nfG~GSSRE 68 (170)
T 2pkp_A 1 MIIKGRAHKFGDDVDTDAIIPGPYLRTT-----DPYELASHCMAGIDENFPKK-VKEG------DVIVAGENFGCGSSRE 68 (170)
T ss_dssp CEEEEEEEECCSCCBHHHHSCGGGGSCC-----CHHHHHTTTTTTTCTTHHHH-CCTT------CEEEECTTBTBSSCCH
T ss_pred CeEEEEEEECCCCCChhhcChHHHhCCC-----CHHHHHHHhcccCCCchHHh-CCCC------CEEEecCCCCCCCCHH
Confidence 3579999999999999999999999732 47899999999999999544 3445 7999999999999999
Q ss_pred cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hH
Q 025777 148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LG 226 (248)
Q Consensus 148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~ 226 (248)
||+|+++++|++||||+|||||||+||+|+| +|||+++ ++.+++||+|+||++.++|+++++|++|++.+.++ ++
T Consensus 69 hAa~a~~~~Gi~aVIA~SFarIf~~N~in~G-llpl~~~---~~~l~~gd~i~idl~~~~v~~~~~g~~~~~~~~~~~~~ 144 (170)
T 2pkp_A 69 QAVIAIKYCGIKAVIAKSFARIFYRNAINVG-LIPIIAN---TDEIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLER 144 (170)
T ss_dssp HHHHHHHTTTCCEEEESCBCHHHHHHHHHHT-CEEEECC---GGGCCTTCEEEEETTTTEEEEGGGTEEEECBCCCHHHH
T ss_pred HHHHHHHHhCCcEEEEchHHHHHHhhHHHCC-CceEEec---HHHcCCCcEEEEECCCCEEEECCCCeEEEEEeCCHHHH
Confidence 9999999999999999999999999999999 7999886 67889999999999999988766789999976665 68
Q ss_pred HHHHhCCHHHHHHHhCCC
Q 025777 227 PVIDAGGIFAYARKTGMI 244 (248)
Q Consensus 227 ~ii~aGGll~y~kk~g~~ 244 (248)
+++++||++||++++.++
T Consensus 145 ~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 145 EILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp HHHHTTSHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh
Confidence 999999999999887654
No 3
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=1.7e-50 Score=341.93 Aligned_cols=153 Identities=36% Similarity=0.641 Sum_probs=137.0
Q ss_pred EeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHh
Q 025777 71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAP 150 (248)
Q Consensus 71 ~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa 150 (248)
+|++|+++||||||+|+|++||+.. +++.+++|+|++.+|+|..+ .++| +|||||+|||||||||||+
T Consensus 4 ~g~~~~~~dnidTD~IiPa~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~iivag~nfG~GSSREhAa 71 (163)
T 1v7l_A 4 TGKVWKFGDDISTDEITPGRYNLTK-----DPKELAKIAFIEVRPDFARN-VRPG------DVVVAGKNFGIGSSRESAA 71 (163)
T ss_dssp EEEEEECCSCCBHHHHSCTTSCCCS-----CHHHHHHHTTTTTCTTHHHH-CCTT------CEEECCSSBTBSCCCTHHH
T ss_pred EEEEEEcCCCCChhccchHHHhCCC-----CHHHHHHHhCCccCcchHHh-CCCC------CEEEecCcCCCCCCHHHHH
Confidence 6999999999999999999999832 47899999999999999544 4555 7999999999999999999
Q ss_pred hhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeE-EEEeeCCC-hHHH
Q 025777 151 VALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKE-YKLKPIGD-LGPV 228 (248)
Q Consensus 151 ~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~-~~~~~~~~-~~~i 228 (248)
|+++.+||+||||+||||||++||+|+| +|||+++ ++.+++||+|+||++.++|+ +|++ |++.+.++ ++++
T Consensus 72 ~a~~~~Gi~aVIA~SFarIf~~N~in~G-llpl~~~---~~~l~~gd~i~idl~~~~v~---~g~~~~~~~~~~~~~~~~ 144 (163)
T 1v7l_A 72 LALKALGIAGVIAESFGRIFYRNAINIG-IPLLLGK---TEGLKDGDLVTVNWETGEVR---KGDEILMFEPLEDFLLEI 144 (163)
T ss_dssp HHHHHHTCCEEEESCBCHHHHHHHHHHT-CCEEESC---CTTCCTTCEEEEETTTTEEE---ETTEEEECEECCHHHHHH
T ss_pred HHHHHhCCCEEEEchHHHHHHhhHHHCC-CceEEec---HHHcCCCcEEEEEccCCEEE---CCcEEEEEEcCCHHHHHH
Confidence 9999999999999999999999999999 7999876 67889999999999999875 4666 88877766 6899
Q ss_pred HHhCCHHHHHHHhC
Q 025777 229 IDAGGIFAYARKTG 242 (248)
Q Consensus 229 i~aGGll~y~kk~g 242 (248)
+++||++||++++.
T Consensus 145 l~aGGll~~~~~~~ 158 (163)
T 1v7l_A 145 VREGGILEYIRRRG 158 (163)
T ss_dssp HHTTSHHHHHHHSC
T ss_pred HHcCCHHHHHHHHH
Confidence 99999999998853
No 4
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=100.00 E-value=1.6e-47 Score=333.09 Aligned_cols=155 Identities=29% Similarity=0.436 Sum_probs=129.5
Q ss_pred CCCceEEeEEEecC-CCCCccccccccccccCCCCchhhHHHhhhhhcCC----------CCCccccccccCCcccceeE
Q 025777 65 EPTATFHGLCYVVG-DNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGL----------PATYTTRFIDENETKTKYKI 133 (248)
Q Consensus 65 ~~~~~i~G~v~~lg-DnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l----------~~~f~~r~~~~G~~~~~~~I 133 (248)
+++++++|++++++ ||||||+|||++||+.. ++++|++|+|+.+ +|+|. .+...+++++|
T Consensus 5 ~~f~~~~G~a~~l~~dnIDTD~IIP~~fL~~~-----~~~~lg~~~f~~~R~~~~g~~~~~pdF~----~n~~~~~~~~I 75 (203)
T 3q3w_A 5 QKFIIHKGIACPLEYANIDTDQIIPKQFLLAV-----SKQGFGKHLFHDLRYLDDKESVLNMDFN----LNKKEYQNSSI 75 (203)
T ss_dssp CCCSEEEEEEEEECCSSCBHHHHSCGGGCBSS-----CSSCSGGGTTHHHHBSSSSSCSBCTTSG----GGSGGGTTEEE
T ss_pred CCcEEEEEEEEECCCcccChhhcchHHHcCcC-----CHHHHHHhhhhhhhccccCCCCCCCChh----hcccccCCCCE
Confidence 67899999999995 99999999999999864 3578999999865 35552 22223445699
Q ss_pred EEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhc------CCCCEEEEEccCcE
Q 025777 134 IIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEEC------STGDVVTIEIAESR 207 (248)
Q Consensus 134 IVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~------~~Gd~I~IDL~~~~ 207 (248)
||||+|||||||||||+|||+++||+||||+||||||||||+|+| +||++.+++..+.+ ++|++|+|||++++
T Consensus 76 lVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~G-ll~i~~~~~~~~~l~~~~~~~~g~~i~VDL~~~~ 154 (203)
T 3q3w_A 76 LVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNG-LLTIELAKDEVLEIVDELKKSQDKNIEISLLEKR 154 (203)
T ss_dssp EEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTT-CEEEECCHHHHHHHHHHHHHCSCCEEEEETTTTE
T ss_pred EEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCC-CCeEEeCHHHHHHHHHHhhcCCCCEEEEECCCCE
Confidence 999999999999999999999999999999999999999999999 78888765444443 79999999999999
Q ss_pred EEeCCCCeEEEEeeCCC-hHHHHHhC
Q 025777 208 LINHTTGKEYKLKPIGD-LGPVIDAG 232 (248)
Q Consensus 208 v~~~~~G~~~~~~~~~~-~~~ii~aG 232 (248)
|+. +|++|+|+ +++ .++++.+|
T Consensus 155 i~~--~g~~~~f~-i~~~~r~~Ll~G 177 (203)
T 3q3w_A 155 VFF--KDKIFSFD-LDDFHRICLLEG 177 (203)
T ss_dssp EEE--TTEEEECC-CCHHHHHHHHHT
T ss_pred EEE--CCEEEEEE-eCHHHHHHHHcC
Confidence 985 58899988 443 56777776
No 5
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=100.00 E-value=7.4e-47 Score=321.27 Aligned_cols=156 Identities=26% Similarity=0.326 Sum_probs=130.7
Q ss_pred CCCceEEeEEEec-CCCCCccccccccccccCCCCchhhHHHhhhhhcCC--CCCccccccccCCcccceeEEEecCccC
Q 025777 65 EPTATFHGLCYVV-GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGL--PATYTTRFIDENETKTKYKIIIAGGNFG 141 (248)
Q Consensus 65 ~~~~~i~G~v~~l-gDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l--~~~f~~r~~~~G~~~~~~~IIVaG~NFG 141 (248)
+++++++|+++++ +||||||+|+|++||+.. ++++|++|+|+.+ +|+|..+. +..++++|||||+|||
T Consensus 5 ~~f~~~~G~~~~l~~dnIdTD~IiPa~~L~~~-----~~~~l~~~~f~~~R~~p~F~~~~----~~~~~~~IlVaG~NFG 75 (171)
T 3h5j_A 5 EAFHTHSGIGVPLRRSNVDTDQIIPAVFLKRV-----TRTGFEDGLFAGWRSDPAFVLNL----SPFDRGSVLVAGPDFG 75 (171)
T ss_dssp CCCSEEEEEEEEECCCSCCHHHHSCGGGTTCC-----SCSCCGGGTTTTGGGSTTSGGGS----TTGGGCCEEEECSSBT
T ss_pred CCcEEEEEEEEEccCCccCcccCCchhhcCCC-----CHHHHHHHhhccCcCCcCccccc----cccCCCcEEEeCCCcc
Confidence 5789999999887 999999999999999864 3578999999987 78884321 1223348999999999
Q ss_pred CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhc------CCCCEEEEEccCcEEEeCCCCe
Q 025777 142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEEC------STGDVVTIEIAESRLINHTTGK 215 (248)
Q Consensus 142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~------~~Gd~I~IDL~~~~v~~~~~G~ 215 (248)
||||||||+|+++.+||+||||+||+|||++||+|+| +||++.+++.++.+ ++|++|+|||++++|++ .|+
T Consensus 76 cGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~G-llpi~~~~~~~~~l~~~~~~~~g~~i~VDl~~~~i~~--~g~ 152 (171)
T 3h5j_A 76 TGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAG-LLAAEVAQDDVELLWKLIEQSPGLEITANLQDRIITA--ATV 152 (171)
T ss_dssp CSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHT-CEEEECCHHHHHHHHHHHHHSTTCEEEEETTTTEEEE--TTE
T ss_pred CCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcC-CceEEeCHHHHHHHHHHhhcCCCcEEEEECCCCEEEE--CCE
Confidence 9999999999999999999999999999999999999 79998876555555 89999999999999987 578
Q ss_pred EEEEeeCCChHHHHHhC
Q 025777 216 EYKLKPIGDLGPVIDAG 232 (248)
Q Consensus 216 ~~~~~~~~~~~~ii~aG 232 (248)
++.|+..+-.++.+-+|
T Consensus 153 ~~~F~i~~~~k~~ll~G 169 (171)
T 3h5j_A 153 VLPFKIDDHSAWRLLEG 169 (171)
T ss_dssp EEECBCCHHHHHHHHHT
T ss_pred EEEEEECHHHHHHHHhC
Confidence 88887544345555554
No 6
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=7.7e-46 Score=324.99 Aligned_cols=155 Identities=30% Similarity=0.539 Sum_probs=131.0
Q ss_pred CCCceEEeEEEec-CCCCCccccccccccccCCCCchhhHHHhhhhhcCCC---------CCccccccccCCcccceeEE
Q 025777 65 EPTATFHGLCYVV-GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLP---------ATYTTRFIDENETKTKYKII 134 (248)
Q Consensus 65 ~~~~~i~G~v~~l-gDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~---------~~f~~r~~~~G~~~~~~~II 134 (248)
++++.++|+|+++ +||||||||||++||+.. +++.|++|+|++++ |+|.. ....+++++||
T Consensus 19 ~~f~~~~g~v~~l~~dnIdTD~IiPa~~L~~~-----~~~~l~~~~f~~~r~~~~~g~~~p~f~~----~~~~~~~~~Il 89 (213)
T 2hcu_A 19 EEFTIYTGTTVPLMNDNIDTDQILPKQFLKLI-----DKKGFGKYLMYEWRYLDNNYTENPDFIF----NQPEYREASIL 89 (213)
T ss_dssp CCCSEEEEEEEEECCSCCCHHHHSCGGGGGSC-----TTSCCGGGTTHHHHBSSTTCCBCTTSGG----GSGGGTTCCEE
T ss_pred CCceEEEEEEEEcCCCCCChhhcchHHHhCcC-----CHHHHHHHHhhcccccccCCCCCCCccc----cchhhcCCcEE
Confidence 5688999999988 699999999999999854 35679999998763 44522 11122345899
Q ss_pred EecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhc---CCCCEEEEEccCcEEEeC
Q 025777 135 IAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEEC---STGDVVTIEIAESRLINH 211 (248)
Q Consensus 135 VaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~---~~Gd~I~IDL~~~~v~~~ 211 (248)
|||+|||||||||||+|+++++||+||||+|||||||+||+|+| +|||+++++.++++ ++|++|+|||++++|++
T Consensus 90 vaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFArIF~~N~in~G-lLpl~~~~~~~~~l~~~~~G~~i~VDl~~~~I~~- 167 (213)
T 2hcu_A 90 ITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNG-ILPIIQPKEVRDKLAKLKPTDEVTVNLFEQKIYS- 167 (213)
T ss_dssp EECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCHHHHHHHHTTT-CEEEECCHHHHHHHHTSCTTCEEEEETTTTEEEE-
T ss_pred EecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHHHHHHcC-CCcEEeCHHHHHHHhccCCCCEEEEECCCCEEEE-
Confidence 99999999999999999999999999999999999999999999 79999877667777 99999999999999986
Q ss_pred CCCeEEEEeeCCC-hHHHHHhC
Q 025777 212 TTGKEYKLKPIGD-LGPVIDAG 232 (248)
Q Consensus 212 ~~G~~~~~~~~~~-~~~ii~aG 232 (248)
++| +++|+ +++ .++++.+|
T Consensus 168 ~~g-~~~f~-i~~~~k~~l~~G 187 (213)
T 2hcu_A 168 PVG-DFSFD-IDGEWKHKLLNG 187 (213)
T ss_dssp TTE-EEECC-CCHHHHHHHHTT
T ss_pred CCc-eEEEe-CCHHHHHHHHcC
Confidence 456 88888 554 57888877
No 7
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=5.7e-42 Score=347.07 Aligned_cols=169 Identities=21% Similarity=0.287 Sum_probs=143.4
Q ss_pred CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhc----CCCCCccccccccC----Cc-ccceeEE
Q 025777 64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALI----GLPATYTTRFIDEN----ET-KTKYKII 134 (248)
Q Consensus 64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~----~l~~~f~~r~~~~G----~~-~~~~~II 134 (248)
+..+++++|+||+++||||||+|||++||+.+. |++.+++|+|+ +++|+|... ..+. +. +++..|+
T Consensus 160 p~~~~~i~g~v~~~~~nIdTD~IiPa~~l~~~~----d~~~~a~~lf~~~r~~~~p~f~~~-~~~~~~i~~~~~~G~~Il 234 (865)
T 1l5j_A 160 PALAEKLTVTVFKVTGETNTDDLSPAPDAWSRP----DIPLHALAMLKNAREGIEPDQPGV-VGPIKQIEALQQKGFPLA 234 (865)
T ss_dssp CCCCSCEEEEEEEEEEEEEHHHHSCGGGGGGTT----SHHHHGGGTTCSCBTTBCCSBTTT-BCSHHHHHHHHTTSSCEE
T ss_pred CCCCceEEEEEEecCCCCchhccCchhhhhcCC----CHHHHHHHHhhccccCCCcccccc-ccchhhhhhhhcCCCEEE
Confidence 344568899999999999999999999995442 57899999999 777776422 1110 00 2234699
Q ss_pred EecCccCCCCCcCcHhhhH-------------HhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEE
Q 025777 135 IAGGNFGCGSSREHAPVAL-------------GAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTI 201 (248)
Q Consensus 135 VaG~NFG~GSSREhAa~al-------------~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~I 201 (248)
|+|+|||||||||||+|++ +.+| ++|||+|||||||+||+|+| +||++.+ ++.+++||+|+|
T Consensus 235 vaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~G-llpi~~~---v~~l~~Gd~i~I 309 (865)
T 1l5j_A 235 YVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAG-ALPIEVD---VSNLNMGDVIDV 309 (865)
T ss_dssp EEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTT-CEEEECC---CTTCCTTCEEEE
T ss_pred EECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcC-CceEEec---HhhcCCCCEEEE
Confidence 9999999999999999999 9999 99999999999999999999 7888875 677899999999
Q ss_pred EccCcEEEeCCCCeE-EEEeeCCC-hHHHHHhCCHHHHHHHhC
Q 025777 202 EIAESRLINHTTGKE-YKLKPIGD-LGPVIDAGGIFAYARKTG 242 (248)
Q Consensus 202 DL~~~~v~~~~~G~~-~~~~~~~~-~~~ii~aGGll~y~kk~g 242 (248)
|+++++|+++++|++ ++|++.++ .++++++||++||+++++
T Consensus 310 dl~~g~I~~~~~g~~~~~f~~~p~~~~~~v~AGGli~~i~~r~ 352 (865)
T 1l5j_A 310 YPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRG 352 (865)
T ss_dssp ETTTTEEEETTTCCEEEECCCSCTHHHHHHHHTSHHHHHHHHH
T ss_pred ECCCCEEEEcCCCeEEEEEEeCCHHHHHHHHcCChhhhhhcch
Confidence 999999998777887 99999888 799999999999998764
No 8
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=5.3e-41 Score=341.34 Aligned_cols=205 Identities=26% Similarity=0.317 Sum_probs=156.6
Q ss_pred ccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCc-eEEeEE-EecCCCCCccccccc----------cccccCCCC
Q 025777 32 LKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTA-TFHGLC-YVVGDNIDTDQIIPA----------EYLTLVPSN 98 (248)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~i~G~v-~~lgDnIdTD~IiPa----------~~l~~~~~~ 98 (248)
++.|++..|.|+|.|+|+. +++ +.++++++.+.. ...+++ .+++||||||||+|| +||+.....
T Consensus 625 ~~~~~~~~~~w~~~St~i~---~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~ 701 (888)
T 2b3y_A 625 LATPSDKLFFWNSKSTYIK---SPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLT 701 (888)
T ss_dssp CCCCCCSSCCCCTTCSSCC---CCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCC
T ss_pred CCCCCCCccccCCCccccc---CCCCccccccCCCCcccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCC
Confidence 4557778899999999998 544 677777766654 445687 788999999999999 799887787
Q ss_pred chhhHHHhh----------hhhcCCC---------CCccccccccCCccc------------ceeEEEecCccCCCCCcC
Q 025777 99 PDEYEKLGS----------YALIGLP---------ATYTTRFIDENETKT------------KYKIIIAGGNFGCGSSRE 147 (248)
Q Consensus 99 p~d~~~l~~----------~a~~~l~---------~~f~~r~~~~G~~~~------------~~~IIVaG~NFG~GSSRE 147 (248)
|+|++.||+ ++|...+ +++ +++.+.|+..+ ..+|||||+|||||||||
T Consensus 702 ~~~f~syg~rRgn~~vm~rg~F~n~r~~n~l~~~~g~~-t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSRE 780 (888)
T 2b3y_A 702 PREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQ-TIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRD 780 (888)
T ss_dssp GGGCCCTGGGTTCHHHHHHTTTCCTTCEETTTTEECSE-EEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCT
T ss_pred hHHhccccccccCHHHHhhhcccccccccccccccCCc-eeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHH
Confidence 888776554 3453322 112 33334454321 137999999999999999
Q ss_pred cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch-hhhh--hcCCCCEEEEEccC----c-EEEeC-CCCeEEE
Q 025777 148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA-RLCE--ECSTGDVVTIEIAE----S-RLINH-TTGKEYK 218 (248)
Q Consensus 148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~-~~~~--~~~~Gd~I~IDL~~----~-~v~~~-~~G~~~~ 218 (248)
||+|+++++||+||||+||+|||++||+|+| ||||++.. .+++ .+..+|+++|||++ + .+... ++|++|.
T Consensus 781 hAa~a~~~~Gi~aVIA~SFarIf~~Nli~~G-llpl~~~~~~~~~~~~~~~~~~i~i~l~~~~~~g~~v~v~~~~G~~~~ 859 (888)
T 2b3y_A 781 WAAKGPFLLGIKAVLAESYERIHRSNLVGMG-VIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQ 859 (888)
T ss_dssp HHHHHHHHTTEEEEEESCBCHHHHHHHHHHT-CEEEEECTTCCHHHHTCCSCSCEEECCCSSCCTTCEEEEEETTSCEEE
T ss_pred HHHHHHHHcCeeEEEEhhHHHHHHhhhhhcC-CceEeecccccHHHhccCCCceEEEEcccccCCCcEEEEEeCCCeEEE
Confidence 9999999999999999999999999999999 79998753 3344 56789999999865 4 33221 5788888
Q ss_pred EeeC--CC-hHHHHHhCCHHHHHHHh
Q 025777 219 LKPI--GD-LGPVIDAGGIFAYARKT 241 (248)
Q Consensus 219 ~~~~--~~-~~~ii~aGGll~y~kk~ 241 (248)
+... ++ +++++++||+|||++++
T Consensus 860 ~~~~~~t~~e~~~~~aGGiL~yv~~~ 885 (888)
T 2b3y_A 860 AVMRFDTDVELTYFLNGGILNYMIRK 885 (888)
T ss_dssp EEECCCSHHHHHHHHHTSHHHHHHHH
T ss_pred EEecCCCHHHHHHHHcCCHHHHHHHH
Confidence 8643 33 68999999999999874
No 9
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=6.6e-38 Score=315.04 Aligned_cols=194 Identities=21% Similarity=0.243 Sum_probs=144.6
Q ss_pred CCCCCCccccceeeccCCCC-ccCccCCCCCCceEEeEE-EecCCCCCccccccc-cccccCCCCchhhHHHhhhhhcCC
Q 025777 37 GNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHGLC-YVVGDNIDTDQIIPA-EYLTLVPSNPDEYEKLGSYALIGL 113 (248)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G~v-~~lgDnIdTD~IiPa-~~l~~~~~~p~d~~~l~~~a~~~l 113 (248)
...+.|.|.++|.. +.+ +.+. ........++ .+++||||||||+|+ +||+.++ .++.+.+++|.+.
T Consensus 525 ~~~~~~~p~s~~~~---~~~~f~~~----~~~~~~~~~vL~klgd~iTTDhIsPAG~~L~~rg----~f~ni~~n~l~~~ 593 (753)
T 1c96_A 525 GQRVAVSPTSQRLQ---LLEPFDKW----DGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRG----HLDNISNNLLIGA 593 (753)
T ss_dssp TCCCCCCTTCSSBC---CCCCCCCC----CSSCEEEEEEEEEBCSCCBHHHHBCCGGGGGGTB----CHHHHGGGBTTTS
T ss_pred cceEeeCCCCcccc---CCCCCCCC----CccccccceEEEeccCCcccccccccchhhcccc----chhhhhhhhcccc
Confidence 34568888888887 332 3321 1112345577 789999999999999 5998875 3678888888654
Q ss_pred CCCcc-----ccccccCCcc---------c---ceeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhh
Q 025777 114 PATYT-----TRFIDENETK---------T---KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVA 176 (248)
Q Consensus 114 ~~~f~-----~r~~~~G~~~---------~---~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in 176 (248)
++.+. .++.+.|+.. + ..+|||||+|||||||||||+|+++++||+||||+||+|||++||+|
T Consensus 594 ~~~~~g~~~~~~~~~~~~~~~~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~ 673 (753)
T 1c96_A 594 INIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKK 673 (753)
T ss_dssp BBTTTCCBSCEECTTTCCEECHHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHH
T ss_pred ccccCCCcceeEEecCCcccccHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhh
Confidence 32221 2333344321 0 14899999999999999999999999999999999999999999999
Q ss_pred cCceeeeecc-hhhhhhcCCCCEEEEE----ccCcE-E---EeCCCCeEEEEe---eCCC-hHHHHHhCCHHHHHHHhC
Q 025777 177 TGEIYPLDSE-ARLCEECSTGDVVTIE----IAESR-L---INHTTGKEYKLK---PIGD-LGPVIDAGGIFAYARKTG 242 (248)
Q Consensus 177 ~GlilPL~~~-~~~~~~~~~Gd~I~ID----L~~~~-v---~~~~~G~~~~~~---~~~~-~~~ii~aGGll~y~kk~g 242 (248)
+| +|||++. +..++.++.||+|+|| +..+. + +++.+|+++.+. +.++ +++|+++||+|||+|++.
T Consensus 674 ~G-llpl~~~~~~~~~~l~~gd~i~I~gl~~l~~g~~v~~~i~~~~g~~~~~~~~~~~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 674 QG-LLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp TT-CEEEEESSGGGGGGCCTTCEEEEECGGGCCTTCCEEEEEECTTSCEEEEEEECCCCHHHHHHHHHTSHHHHHHHHS
T ss_pred cC-CcceeecCcchhhhcCCCCEEEEcChHHcCCCceEEEEEEecCCcEEEEEEeCCCCHHHHHHHHcCCHHHHHHHhh
Confidence 99 7999874 4578889999999998 44442 2 345568777665 2333 689999999999999853
No 10
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=56.31 E-value=71 Score=25.71 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=52.3
Q ss_pred eEEEecCccCCCCCc-CcHhhhHHhcCc--cEEEechhhHHHhhchhhcCceeeee--cchhhhhhcCCCCEEEEEccCc
Q 025777 132 KIIIAGGNFGCGSSR-EHAPVALGAAGC--SAVVAESYARIFFRNSVATGEIYPLD--SEARLCEECSTGDVVTIEIAES 206 (248)
Q Consensus 132 ~IIVaG~NFG~GSSR-EhAa~al~~lGI--~aVIAeSFarIf~rN~in~GlilPL~--~~~~~~~~~~~Gd~I~IDL~~~ 206 (248)
.|+|= -.|-||+= -+.-+.++..|. +|+|-+.-..|--.-++=.+ +|+. .+++.++.++.||.|+||-+++
T Consensus 52 kILv~--P~gkGSt~gS~vl~~l~~~g~aPaAiI~~~~e~Il~~Gaiva~--IP~vd~~~~d~~~~i~~G~~v~vd~~~G 127 (141)
T 2hi6_A 52 RILVF--PGGKGSTVGSYVLLNLRKNGVAPKAIINKKTETIIAVGAAMAE--IPLVEVRDEKFFEAVKTGDRVVVNADEG 127 (141)
T ss_dssp SEEEE--SCCSCCSSCTTHHHHHHHHTCSCSEEEESSCCHHHHHHHHHHT--CCEEECCCTHHHHHCCTTSEEEEETTTT
T ss_pred eEEEe--cCCCCccHHHHHHHHHHHCCCCCeEEEecCcchhhhhhhheeC--CceEeccChhHHHHhcCCCEEEEeCCCC
Confidence 46554 34455542 144555555565 59998888888888888887 5665 2445688899999999998888
Q ss_pred EEEe
Q 025777 207 RLIN 210 (248)
Q Consensus 207 ~v~~ 210 (248)
.|..
T Consensus 128 ~v~v 131 (141)
T 2hi6_A 128 YVEL 131 (141)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 11
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=31.58 E-value=35 Score=25.58 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=30.8
Q ss_pred CcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeee
Q 025777 147 EHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184 (248)
Q Consensus 147 EhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~ 184 (248)
...+..|...|+.+||+..++.-.++-+...| |-++.
T Consensus 53 g~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~G-I~v~~ 89 (121)
T 2yx6_A 53 GDLPNFIKDHGAKIVLTYGIGRRAIEYFNSLG-ISVVT 89 (121)
T ss_dssp CHHHHHHHHTTCCEEECSBCCHHHHHHHHHTT-CEEEC
T ss_pred CHHHHHHHHcCCCEEEECCCCHhHHHHHHHCC-CEEEE
Confidence 36777788889999999999999999999999 54443
No 12
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=30.88 E-value=51 Score=28.68 Aligned_cols=22 Identities=5% Similarity=0.240 Sum_probs=16.8
Q ss_pred hhhhcCCCCEEEEEccCcEEEe
Q 025777 189 LCEECSTGDVVTIEIAESRLIN 210 (248)
Q Consensus 189 ~~~~~~~Gd~I~IDL~~~~v~~ 210 (248)
....++.|+.|+||-..|+|..
T Consensus 208 ~~~~~~~G~~v~vDg~~G~v~~ 229 (258)
T 1zym_A 208 VTSQVKNDDYLILDAVNNQVYV 229 (258)
T ss_dssp HHHHCCTTCEEEECCSSCCEEE
T ss_pred HHHhCCCCCEEEEECCCCeEEE
Confidence 3456789999999987776654
No 13
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=26.11 E-value=69 Score=23.99 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=31.1
Q ss_pred cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeee
Q 025777 148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184 (248)
Q Consensus 148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~ 184 (248)
.++..|...|+.+||+..++.-.++-+...| |-++.
T Consensus 56 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~G-I~v~~ 91 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIASSPGPNAFEVLNELG-IKIYR 91 (124)
T ss_dssp THHHHHHHTTCCEEEECCSSHHHHHHHHHHT-CEEEE
T ss_pred HHHHHHHHCCCCEEEECCcCHHHHHHHHHCC-CEEEE
Confidence 6788888999999999999999999999999 55554
No 14
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=23.40 E-value=64 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=30.7
Q ss_pred cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeee
Q 025777 148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184 (248)
Q Consensus 148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~ 184 (248)
..+..|...|+.+||+.+.+.-.++-+...| |-++.
T Consensus 67 ~~a~~L~~~gv~vVI~g~IG~~a~~~L~~~G-I~v~~ 102 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVRGIGRRAIAAFEAMG-VKVIK 102 (136)
T ss_dssp CHHHHHHHTTCSEEECSCCCHHHHHHHHHTT-CEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCC-CEEEe
Confidence 6777888889999999999999999999999 55554
No 15
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=23.09 E-value=1.3e+02 Score=29.41 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEe
Q 025777 142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLIN 210 (248)
Q Consensus 142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~ 210 (248)
.|+.--|++..-+.+||.+|+.-. ...+.+++||.|+||-..|+|..
T Consensus 185 ~Gg~tSHaAIvAR~lgIPaVvg~~----------------------~~~~~~~~G~~v~vDg~~G~V~~ 231 (572)
T 2wqd_A 185 IGGRTSASAIMSRSLEIPAIVGTK----------------------SITQEVKQGDMIIVDGLNGDVIV 231 (572)
T ss_dssp SCCTTSHHHHHHHHTTCCEEECCS----------------------SHHHHCCTTCEEEEETTTTEEEE
T ss_pred CCCcccHHHHHHHHcCCCEEEech----------------------hHHhhCCCCCEEEEECCCCEEEe
Confidence 566666777777777777776422 12345678889988877776654
No 16
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=22.51 E-value=1.3e+02 Score=29.33 Aligned_cols=47 Identities=11% Similarity=0.269 Sum_probs=30.3
Q ss_pred CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEe
Q 025777 142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLIN 210 (248)
Q Consensus 142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~ 210 (248)
.|+.--|++..-+.+||.+|+.-. ...+.+++||.|+||-..|+|..
T Consensus 183 ~Gg~tSHaAIvAR~lgIPaVvG~~----------------------~~~~~~~~G~~v~vDg~~G~V~~ 229 (575)
T 2hwg_A 183 AGGRTSHTSIMARSLELPAIVGTG----------------------SVTSQVKNDDYLILDAVNNQVYV 229 (575)
T ss_dssp SCCTTSHHHHHHHHTTCCEEECCS----------------------CHHHHCCTTCEEEEETTTTEEEE
T ss_pred CCCcccHHHHHHHHCCCCEEEcch----------------------hHHhhCCCCCEEEEECCCCEEEe
Confidence 466666666666666666666422 22345678899999877776654
Done!