RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025777
         (248 letters)



>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 162

 Score =  108 bits (272), Expect = 3e-30
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 19/176 (10%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
             G  +  GD+I TD+I P  Y   +  +P E   L   A I +         D      
Sbjct: 3   TTGKVWKFGDDISTDEITPGRY--NLTKDPKE---LAKIAFIEVRP-------DFARNVR 50

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
              +++AG NFG GSSRE A +AL A G + V+AES+ RIF+RN++  G    L      
Sbjct: 51  PGDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGKT--- 107

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYARKTGMI 244
            E    GD+VT+      +      +    +P+ D    ++  GGI  Y R+ G +
Sbjct: 108 -EGLKDGDLVTVNWETGEVRKG--DEILMFEPLEDFLLEIVREGGILEYIRRRGDL 160


>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 226

 Score = 80.9 bits (199), Expect = 4e-19
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 26/191 (13%)

Query: 76  VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT------ 129
            V     TD I  A        + D          I           +    +       
Sbjct: 32  KVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAVTQEFGPVPDT 91

Query: 130 --KYK------IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIY 181
              YK      ++I   N+G GSSREH+ +     G  A++ +S+ARI   N    G + 
Sbjct: 92  ARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLP 151

Query: 182 PLDSEARLCEECSTGDVVTIEIAESRL--------INHTTGKEYKLKPIGDLGPV----I 229
              ++     +    D +TI+  +           I H  G +  +              
Sbjct: 152 LTFADPADYNKIHPVDKLTIQGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWF 211

Query: 230 DAGGIFAYARK 240
            AG      ++
Sbjct: 212 RAGSALNRMKE 222


>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein
           1, C-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 259

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 44/216 (20%), Positives = 66/216 (30%), Gaps = 51/216 (23%)

Query: 76  VVGDNIDTDQIIPA-------EYLTLVPSNPDEYEKLGSYA------------------- 109
            +GD++ TD I PA            + +      +  SY                    
Sbjct: 40  NLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRL 99

Query: 110 --------------LIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGA 155
                         L            +  +      I++AG  +G GSSR+ A      
Sbjct: 100 LNRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFL 159

Query: 156 AGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE--ECSTGDVVTIEIAESR------ 207
            G  AV+AESY RI   N V  G I          +    +  +  TI I E+       
Sbjct: 160 LGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKV 219

Query: 208 LINHTTGKEYKLKPIGDLGPVID---AGGIFAYARK 240
            +   TGK ++     D    +     GGI  Y  +
Sbjct: 220 QVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIR 255


>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
           coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
           py2 [TaxId: 35809]}
          Length = 261

 Score = 27.2 bits (59), Expect = 1.6
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 122 IDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFR 172
           +DEN+ +    I I GG  G   S         A G   ++ + +  +   
Sbjct: 35  VDENDPREYDAIFIGGGAAGRFGSAYLR-----AMGGRQLIVDRWPFLGGS 80


>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
          [TaxId: 375]}
          Length = 412

 Score = 27.4 bits (59), Expect = 1.8
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 56 TSADSRATKEPTATFHGLCYVVGDNIDT 83
             D  A  + +    G+   + D IDT
Sbjct: 40 VRHDKSARAQASGPLRGIAVGIKDIIDT 67


>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
          maltophilia [TaxId: 40324]}
          Length = 490

 Score = 27.4 bits (59), Expect = 1.9
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 55 ATSADSRATKEPTATFHGLCYVVGDNIDT 83
          A     R         HG+  ++ DNI+ 
Sbjct: 59 AERDRERRDGRLRGPLHGIPLLLKDNINA 87


>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
          subunit A {Staphylococcus aureus [TaxId: 1280]}
          Length = 485

 Score = 26.7 bits (58), Expect = 3.3
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 42 AVTFQRAVSVIPKATSADSR-ATKEPTATFHGLCYVVGDNIDT 83
          +       + I KA   D   A  +      G+   + DNI T
Sbjct: 42 SFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIIT 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 885,016
Number of extensions: 40430
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 10
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)