BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025778
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92797|SYMPK_HUMAN Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2
Length = 1274
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 7/180 (3%)
Query: 25 KLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84
K++ LKQV+ ++ + DP+L ++ Q+ VRK +I IE+ + +E L
Sbjct: 51 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKL 110
Query: 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKD 144
+ L LRD + V K+I+ T + ++ +Q+ +V L+E MV
Sbjct: 111 IANLNMLLRDENVNVVKKAILTMTQLY-----KVALQWMVKSRVISELQEACWDMVSAMA 165
Query: 145 AVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFL 204
+ L+ G + A+KF+E ++ + D E ++ + ++ + HP++
Sbjct: 166 GDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQ--EHDISLDRIPRDHPYI 223
>sp|Q80X82|SYMPK_MOUSE Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1
Length = 1284
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 7/180 (3%)
Query: 25 KLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84
K++ LKQV+ ++ + DP+L ++ Q+ VRK +I IE+ + +E L
Sbjct: 51 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKL 110
Query: 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKD 144
+ L LRD + V K+I+ T + ++ +Q+ +V L+E MV
Sbjct: 111 IANLNMLLRDENVNVVKKAILTMTQLY-----KVALQWMVKSRVISDLQEACWDMVSSMA 165
Query: 145 AVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFL 204
+ L+ G + A+KF+E ++ + D E ++ + ++ + HP++
Sbjct: 166 GEIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEVPRRQ--EHDISLDRIPRDHPYI 223
>sp|Q01329|PTA1_YEAST Pre-tRNA-processing protein PTA1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PTA1 PE=1 SV=1
Length = 785
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 156 VGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANR 215
+G KL +KF+ VL + TK S N S + HP L+ +L SEA R
Sbjct: 163 IGVKLATIKFISEVVL----------SQTKSPSGNEINSSTIPDNHPVLNKPALESEAKR 212
Query: 216 MLGTLMDLLQSACNLPGSVIITVVNCLNSLCR 247
+L L++ L + SV I ++N L+ + +
Sbjct: 213 LLDMLLNYLIEEQYMVSSVFIGIINSLSFVIK 244
>sp|Q7ZYV9|SYMPK_XENLA Symplekin OS=Xenopus laevis GN=sympk PE=1 SV=1
Length = 1202
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 11/195 (5%)
Query: 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIET 69
L++ A A N K++ LKQV+ ++ + DP+L ++ Q+ VRK ++
Sbjct: 30 LNMAALATND----TKITMLKQVQELIINKDPTLLDNFLDEIIAFQADKSVEVRKIVVNF 85
Query: 70 IEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVE 129
IE+ E L+ L L+D + V KSI+ T + L+ + R E
Sbjct: 86 IEEACKLDNELLIKLIANLHMLLKDENVNVVKKSILTMTQLYKVALQWVA---RSRPPSE 142
Query: 130 RWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSK 189
+ E W + + + LE G + A+KF+E+ ++ + + D E ++
Sbjct: 143 QQ-ESCWDLVTEMAADIL-LLLESDNDGMRTHAVKFVESLIVTLSPRTADSEVPKRQDGD 200
Query: 190 QTFNISWLSGGHPFL 204
++ + H FL
Sbjct: 201 --ISLEQIPPDHQFL 213
>sp|Q8ZCS5|HSCA_YERPE Chaperone protein HscA OS=Yersinia pestis GN=hscA PE=3 SV=1
Length = 650
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 149 IALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVS 208
IA E + G +L+A + L L D Q ++ W + LDPV+
Sbjct: 55 IADEQLIAGEQLIAGQQLIAGQQLINEKQRDLLPSVVHYHPQGIDVGWKARNLAALDPVN 114
Query: 209 LTSEANRMLG-TLMDLLQSACNLP 231
S RM+G +L D++Q NLP
Sbjct: 115 TISSVKRMMGRSLADIVQRYPNLP 138
>sp|Q667Y5|HSCA_YERPS Chaperone protein HscA OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=hscA PE=3 SV=1
Length = 644
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 155 LVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEAN 214
+ G +L+A + L L D Q ++ W + LDPV+ S
Sbjct: 55 IAGEQLIAGEQLIAGQQLINEKQRDLLPSVVHYHPQGIDVGWKARNLAALDPVNTISSVK 114
Query: 215 RMLG-TLMDLLQSACNLP 231
RM+G +L D++Q NLP
Sbjct: 115 RMMGRSLADIVQRYPNLP 132
>sp|Q9HVW7|MURA_PSEAE UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=murA PE=3 SV=1
Length = 421
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 195 SWLSGGHPFLDPVSLTSEANRMLGTLM----DLLQSACNLPGSVIITVVNCLNSL 245
L GGH F D VS+T N M+ + +LQ+A P ++ + NCLN++
Sbjct: 152 GGLRGGHFFFDTVSVTGTENLMMAAALANGRTVLQNAAREP--EVVDLANCLNAM 204
>sp|Q02GZ1|MURA_PSEAB UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=murA PE=3 SV=1
Length = 421
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 195 SWLSGGHPFLDPVSLTSEANRMLGTLM----DLLQSACNLPGSVIITVVNCLNSL 245
L GGH F D VS+T N M+ + +LQ+A P ++ + NCLN++
Sbjct: 152 GGLRGGHFFFDTVSVTGTENLMMAAALANGRTVLQNAAREP--EVVDLANCLNAM 204
>sp|B7UZY9|MURA_PSEA8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Pseudomonas
aeruginosa (strain LESB58) GN=murA PE=3 SV=1
Length = 421
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 195 SWLSGGHPFLDPVSLTSEANRMLGTLM----DLLQSACNLPGSVIITVVNCLNSL 245
L GGH F D VS+T N M+ + +LQ+A P ++ + NCLN++
Sbjct: 152 GGLRGGHFFFDTVSVTGTENLMMAAALANGRTVLQNAAREP--EVVDLANCLNAM 204
>sp|P11067|NIFB_AZOVI FeMo cofactor biosynthesis protein NifB OS=Azotobacter vinelandii
GN=nifB PE=3 SV=1
Length = 502
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 36 LSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPV 87
++ DP + A+++P L+E Q+ P RK LIE + GL+ + IL+ V
Sbjct: 174 INCVDPEIGAKIYPDLLEQQAHPRRQGRKILIEQ-QQKGLEMLVARGILVKV 224
>sp|B1W1H9|TATB_STRGG Sec-independent protein translocase protein TatB OS=Streptomyces
griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
GN=tatB PE=3 SV=1
Length = 166
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 28 SLKQVRGILSSADPSLAAELFPYLVELQS---SPESLVRKSLIETIEDIGLKAMEHS 81
+++++R SA + +EL P + + +P++ VRK L++ +D+GLK + S
Sbjct: 36 TIRKIREFSDSAKEDIRSELGPQFKDFEFEDLNPKTFVRKQLMDGNDDLGLKEIRES 92
>sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830
OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2
Length = 608
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL 75
V G S +P A +LF ++++ SP + SLI+ D+G+
Sbjct: 254 VSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGM 297
>sp|A6VBC3|MURA_PSEA7 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Pseudomonas
aeruginosa (strain PA7) GN=murA PE=3 SV=1
Length = 421
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 189 KQTFNISWLSGGHPFLDPVSLTSEANRMLGTLM----DLLQSACNLPGSVIITVVNCLNS 244
K + L GG F D VS+T N M+ + +LQ+A P ++ + NCLN+
Sbjct: 146 KAKAPVGGLHGGQFFFDTVSVTGTENLMMAAALANGRTVLQNAAREP--EVVDLANCLNA 203
Query: 245 L 245
+
Sbjct: 204 M 204
>sp|Q5WLR5|EFG_BACSK Elongation factor G OS=Bacillus clausii (strain KSM-K16) GN=fusA
PE=3 SV=1
Length = 692
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
Y E +S ESLV +++ E ED+ +K +E + L A +R G V +VCGT
Sbjct: 203 YKDEAESLRESLV-EAVAELDEDLMMKYLEGEELTKDELKAAIRKGTCNVEFYPVVCGTA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|B5XJR1|EFG_STRPZ Elongation factor G OS=Streptococcus pyogenes serotype M49 (strain
NZ131) GN=fusA PE=3 SV=1
Length = 692
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q S E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQESREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,190,108
Number of Sequences: 539616
Number of extensions: 3348642
Number of successful extensions: 7971
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7966
Number of HSP's gapped (non-prelim): 29
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)