Query 025778
Match_columns 248
No_of_seqs 122 out of 168
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11935 DUF3453: Domain of un 100.0 4.6E-41 9.9E-46 296.5 15.2 146 91-248 1-146 (239)
2 KOG1895 mRNA cleavage and poly 99.9 8E-22 1.7E-26 198.3 16.0 192 28-245 2-193 (957)
3 PF05918 API5: Apoptosis inhib 96.9 0.0062 1.3E-07 60.0 9.5 112 39-172 52-163 (556)
4 PF01602 Adaptin_N: Adaptin N 96.8 0.038 8.3E-07 53.1 14.1 99 9-110 80-179 (526)
5 PRK09687 putative lyase; Provi 96.2 0.32 7E-06 44.0 15.6 154 8-168 54-218 (280)
6 PTZ00429 beta-adaptin; Provisi 95.9 0.62 1.3E-05 47.9 17.9 173 38-245 97-283 (746)
7 COG5096 Vesicle coat complex, 95.7 0.19 4E-06 51.4 13.0 106 7-113 88-196 (757)
8 PF01602 Adaptin_N: Adaptin N 95.7 0.22 4.8E-06 47.8 13.2 138 7-169 7-179 (526)
9 PF12830 Nipped-B_C: Sister ch 95.4 0.051 1.1E-06 46.2 6.6 70 42-111 4-73 (187)
10 COG5096 Vesicle coat complex, 95.0 0.2 4.4E-06 51.2 10.4 95 17-113 28-157 (757)
11 PF12717 Cnd1: non-SMC mitotic 94.7 0.27 5.8E-06 41.2 9.2 87 24-111 4-91 (178)
12 PF10508 Proteasom_PSMB: Prote 94.3 2.8 6E-05 41.0 16.5 146 7-171 76-231 (503)
13 PF13646 HEAT_2: HEAT repeats; 94.2 0.11 2.4E-06 37.5 5.0 56 49-110 2-58 (88)
14 PTZ00429 beta-adaptin; Provisi 94.1 1.4 3E-05 45.4 14.3 97 19-118 43-141 (746)
15 PF12348 CLASP_N: CLASP N term 94.1 0.55 1.2E-05 40.3 9.9 187 9-226 8-210 (228)
16 PF12755 Vac14_Fab1_bd: Vacuol 93.9 0.31 6.6E-06 37.3 7.0 62 42-103 23-88 (97)
17 PF13646 HEAT_2: HEAT repeats; 92.9 0.72 1.6E-05 33.1 7.4 83 12-107 4-87 (88)
18 cd00020 ARM Armadillo/beta-cat 92.7 0.33 7.2E-06 36.3 5.6 65 47-111 8-77 (120)
19 PF10363 DUF2435: Protein of u 92.5 0.58 1.2E-05 35.5 6.6 75 48-122 5-86 (92)
20 cd00020 ARM Armadillo/beta-cat 92.4 1.4 2.9E-05 32.9 8.7 91 20-110 19-118 (120)
21 KOG1058 Vesicle coat complex C 92.3 0.78 1.7E-05 46.8 9.0 98 13-113 25-164 (948)
22 PF12717 Cnd1: non-SMC mitotic 92.2 5.7 0.00012 33.1 13.0 131 7-148 24-157 (178)
23 PF02985 HEAT: HEAT repeat; I 90.8 0.52 1.1E-05 28.0 3.9 28 85-112 2-29 (31)
24 PF13513 HEAT_EZ: HEAT-like re 90.5 0.81 1.8E-05 30.4 5.1 50 61-110 2-55 (55)
25 KOG1060 Vesicle coat complex A 90.2 4.6 9.9E-05 41.7 12.0 103 40-144 137-240 (968)
26 PRK09687 putative lyase; Provi 90.0 2.1 4.6E-05 38.7 8.8 98 6-110 88-186 (280)
27 PF12530 DUF3730: Protein of u 89.2 15 0.00032 32.3 16.0 105 9-115 39-154 (234)
28 PF02985 HEAT: HEAT repeat; I 87.9 0.8 1.7E-05 27.2 3.1 29 47-75 1-29 (31)
29 KOG2011 Sister chromatid cohes 87.6 4.5 9.8E-05 42.9 10.3 125 25-166 262-394 (1048)
30 KOG2956 CLIP-associating prote 87.1 25 0.00054 34.4 14.2 108 5-112 284-400 (516)
31 KOG1020 Sister chromatid cohes 86.7 6.1 0.00013 43.4 10.8 81 28-108 867-956 (1692)
32 PF05918 API5: Apoptosis inhib 86.6 5.4 0.00012 39.7 9.8 131 26-167 2-140 (556)
33 PF12348 CLASP_N: CLASP N term 85.9 21 0.00045 30.4 12.8 86 27-114 113-208 (228)
34 KOG1525 Sister chromatid cohes 85.0 1.4 3E-05 47.7 5.2 127 20-159 312-441 (1266)
35 PF10274 ParcG: Parkin co-regu 84.8 5.2 0.00011 34.2 7.7 70 41-110 37-107 (183)
36 KOG1059 Vesicle coat complex A 82.5 4.3 9.2E-05 41.5 7.1 66 40-105 138-203 (877)
37 PF10521 DUF2454: Protein of u 82.4 20 0.00043 32.3 11.0 97 43-151 116-230 (282)
38 PF10508 Proteasom_PSMB: Prote 81.3 57 0.0012 31.9 19.2 108 10-119 121-240 (503)
39 PF12755 Vac14_Fab1_bd: Vacuol 80.8 22 0.00048 27.0 10.3 73 77-168 21-93 (97)
40 PF12765 Cohesin_HEAT: HEAT re 80.6 1.7 3.6E-05 28.0 2.4 35 36-70 6-42 (42)
41 KOG1060 Vesicle coat complex A 78.2 14 0.0003 38.3 9.1 102 6-113 37-173 (968)
42 KOG1248 Uncharacterized conser 77.7 92 0.002 33.8 15.1 189 10-225 699-901 (1176)
43 KOG1058 Vesicle coat complex C 75.4 80 0.0017 32.9 13.5 150 9-166 172-341 (948)
44 KOG2229 Protein required for a 75.3 60 0.0013 32.3 12.2 106 6-112 18-129 (616)
45 PF00514 Arm: Armadillo/beta-c 75.2 5.4 0.00012 24.8 3.6 29 82-110 11-39 (41)
46 PRK13800 putative oxidoreducta 71.7 24 0.00052 37.1 9.4 48 56-109 817-864 (897)
47 PF12830 Nipped-B_C: Sister ch 71.6 49 0.0011 27.8 9.8 63 16-81 16-80 (187)
48 KOG2023 Nuclear transport rece 71.6 25 0.00054 36.0 8.9 71 42-112 170-244 (885)
49 KOG0212 Uncharacterized conser 71.3 1.2E+02 0.0026 30.6 15.2 67 8-74 167-240 (675)
50 PF04826 Arm_2: Armadillo-like 70.7 61 0.0013 28.9 10.6 136 20-159 107-250 (254)
51 KOG1895 mRNA cleavage and poly 70.6 2.8 6.1E-05 44.1 2.2 95 128-225 18-112 (957)
52 PF13001 Ecm29: Proteasome sta 69.7 65 0.0014 31.5 11.4 97 59-169 387-486 (501)
53 KOG1062 Vesicle coat complex A 69.6 11 0.00023 39.1 5.9 73 78-172 137-209 (866)
54 COG5218 YCG1 Chromosome conden 68.5 1.4E+02 0.0031 30.4 14.0 143 4-166 8-156 (885)
55 PRK13800 putative oxidoreducta 67.6 1.7E+02 0.0036 30.9 14.8 28 46-73 652-679 (897)
56 PF09324 DUF1981: Domain of un 65.6 37 0.00079 25.1 6.9 64 45-108 16-84 (86)
57 KOG1061 Vesicle coat complex A 65.3 17 0.00038 37.2 6.5 133 32-173 107-270 (734)
58 KOG1020 Sister chromatid cohes 62.4 95 0.0021 34.7 11.5 93 19-112 827-921 (1692)
59 PF04118 Dopey_N: Dopey, N-ter 61.9 74 0.0016 29.3 9.5 101 45-170 96-200 (307)
60 KOG2149 Uncharacterized conser 60.3 1.3E+02 0.0029 28.7 11.0 124 10-148 61-193 (393)
61 KOG2171 Karyopherin (importin) 58.9 2.4E+02 0.0052 30.6 13.5 22 152-174 170-191 (1075)
62 PF04510 DUF577: Family of unk 57.4 70 0.0015 27.2 7.8 70 43-112 81-164 (174)
63 KOG1525 Sister chromatid cohes 57.0 93 0.002 34.3 10.5 110 45-172 221-330 (1266)
64 KOG0168 Putative ubiquitin fus 55.1 24 0.00053 37.0 5.5 105 8-114 514-631 (1051)
65 KOG0915 Uncharacterized conser 54.9 2E+02 0.0044 32.4 12.3 123 43-172 1127-1266(1702)
66 smart00185 ARM Armadillo/beta- 54.6 18 0.00038 21.7 3.0 27 84-110 13-39 (41)
67 PF12719 Cnd3: Nuclear condens 53.9 1.7E+02 0.0036 26.3 11.4 65 43-107 23-88 (298)
68 PF07840 FadR_C: FadR C-termin 53.8 21 0.00046 30.0 4.2 69 39-115 18-94 (164)
69 PF14664 RICTOR_N: Rapamycin-i 53.0 87 0.0019 29.6 8.6 61 21-81 81-143 (371)
70 KOG1062 Vesicle coat complex A 52.9 1.2E+02 0.0025 31.9 9.8 61 40-100 136-196 (866)
71 KOG2259 Uncharacterized conser 52.6 1E+02 0.0023 31.7 9.3 149 57-231 384-539 (823)
72 PF07571 DUF1546: Protein of u 51.9 98 0.0021 23.1 7.6 59 57-115 17-81 (92)
73 KOG0413 Uncharacterized conser 49.9 60 0.0013 34.9 7.3 79 33-112 956-1035(1529)
74 KOG1824 TATA-binding protein-i 49.6 1.3E+02 0.0028 32.3 9.7 117 43-176 648-770 (1233)
75 PF08167 RIX1: rRNA processing 48.8 1.5E+02 0.0033 24.3 12.8 121 41-174 20-146 (165)
76 KOG0212 Uncharacterized conser 48.5 1.8E+02 0.0039 29.5 10.0 104 11-115 339-456 (675)
77 PF13720 Acetyltransf_11: Udp 48.4 81 0.0018 23.1 6.2 48 22-72 29-76 (83)
78 KOG2032 Uncharacterized conser 48.2 2.9E+02 0.0063 27.4 11.6 116 41-176 253-376 (533)
79 KOG2160 Armadillo/beta-catenin 47.6 1.5E+02 0.0032 28.0 9.0 94 19-112 94-196 (342)
80 KOG2023 Nuclear transport rece 47.1 87 0.0019 32.3 7.8 78 25-102 191-275 (885)
81 PF07540 NOC3p: Nucleolar comp 47.0 85 0.0018 23.9 6.2 51 64-115 6-57 (95)
82 PF12335 SBF2: Myotubularin pr 46.3 2.1E+02 0.0045 25.2 11.0 92 20-113 18-118 (225)
83 cd08050 TAF6 TATA Binding Prot 45.0 1.2E+02 0.0027 28.1 8.3 72 24-96 232-322 (343)
84 PF11698 V-ATPase_H_C: V-ATPas 44.7 1.6E+02 0.0034 23.4 8.1 79 76-171 36-115 (119)
85 KOG0946 ER-Golgi vesicle-tethe 44.1 4.2E+02 0.009 28.1 15.1 162 58-247 134-346 (970)
86 KOG1992 Nuclear export recepto 43.8 92 0.002 32.7 7.5 78 50-139 92-170 (960)
87 COG5240 SEC21 Vesicle coat com 43.2 2.6E+02 0.0057 28.6 10.3 88 7-97 226-317 (898)
88 KOG2171 Karyopherin (importin) 43.1 4.7E+02 0.01 28.4 13.1 106 9-115 349-464 (1075)
89 KOG0166 Karyopherin (importin) 42.8 2.4E+02 0.0051 28.1 10.0 101 10-110 68-179 (514)
90 PF12530 DUF3730: Protein of u 42.2 2.3E+02 0.005 24.6 14.4 141 11-170 4-150 (234)
91 PF01603 B56: Protein phosphat 40.6 2.1E+02 0.0046 27.2 9.3 82 27-108 236-322 (409)
92 COG5537 IRR1 Cohesin [Cell div 40.3 4.1E+02 0.0089 27.2 11.2 123 36-174 260-389 (740)
93 cd06561 AlkD_like A new struct 39.8 1E+02 0.0022 25.4 6.3 60 51-111 110-169 (197)
94 KOG1077 Vesicle coat complex A 39.0 1.5E+02 0.0033 30.8 8.1 80 26-105 307-391 (938)
95 PF11099 M11L: Apoptosis regul 38.5 35 0.00076 28.7 3.1 59 107-173 38-96 (167)
96 PF14500 MMS19_N: Dos2-interac 38.5 1E+02 0.0023 27.6 6.4 73 63-147 188-260 (262)
97 KOG1967 DNA repair/transcripti 37.8 1.5E+02 0.0034 31.5 8.1 98 8-106 909-1018(1030)
98 KOG1240 Protein kinase contain 37.7 3.1E+02 0.0066 30.4 10.4 128 4-139 652-787 (1431)
99 PF09424 YqeY: Yqey-like prote 37.0 1.2E+02 0.0025 24.7 6.0 47 43-94 82-128 (143)
100 TIGR02270 conserved hypothetic 36.8 2.6E+02 0.0057 26.8 9.2 51 48-104 88-138 (410)
101 PLN03200 cellulose synthase-in 36.0 7.9E+02 0.017 29.0 14.6 67 46-112 609-680 (2102)
102 KOG0211 Protein phosphatase 2A 35.7 2.2E+02 0.0048 29.7 8.9 66 43-108 476-543 (759)
103 PF08713 DNA_alkylation: DNA a 35.4 99 0.0021 25.8 5.6 29 55-83 164-192 (213)
104 KOG3961 Uncharacterized conser 35.1 1.1E+02 0.0024 27.2 5.8 68 43-110 115-182 (262)
105 KOG1240 Protein kinase contain 34.7 2.2E+02 0.0047 31.5 8.8 84 22-105 437-529 (1431)
106 PF02847 MA3: MA3 domain; Int 34.6 1.9E+02 0.0042 21.5 9.0 66 6-77 2-67 (113)
107 PF08337 Plexin_cytopl: Plexin 34.5 4.9E+02 0.011 26.1 12.6 109 24-148 38-161 (539)
108 KOG3723 PH domain protein Melt 34.5 3.5E+02 0.0077 27.6 9.7 99 20-118 170-276 (851)
109 KOG1824 TATA-binding protein-i 34.4 3.7E+02 0.008 29.1 10.2 109 5-114 128-244 (1233)
110 PF09280 XPC-binding: XPC-bind 33.9 77 0.0017 21.9 3.8 34 28-66 9-42 (59)
111 KOG3678 SARM protein (with ste 33.1 5.1E+02 0.011 25.9 10.8 192 25-225 199-409 (832)
112 KOG1061 Vesicle coat complex A 32.9 89 0.0019 32.3 5.5 55 40-95 344-398 (734)
113 PLN03200 cellulose synthase-in 32.3 3.8E+02 0.0082 31.4 10.6 109 4-115 10-128 (2102)
114 KOG0211 Protein phosphatase 2A 32.1 1.9E+02 0.0041 30.2 7.8 87 24-110 573-662 (759)
115 smart00544 MA3 Domain in DAP-5 31.8 2.2E+02 0.0047 21.3 8.8 66 6-77 2-67 (113)
116 PRK13342 recombination factor 31.2 4.2E+02 0.0091 25.0 9.6 65 27-91 232-296 (413)
117 KOG2025 Chromosome condensatio 30.7 6.6E+02 0.014 26.4 12.4 145 4-169 2-153 (892)
118 KOG0946 ER-Golgi vesicle-tethe 30.6 2.3E+02 0.005 29.9 7.9 121 45-171 21-151 (970)
119 PF11935 DUF3453: Domain of un 30.0 3.8E+02 0.0082 23.4 9.1 46 70-115 140-189 (239)
120 KOG0392 SNF2 family DNA-depend 29.3 2.5E+02 0.0054 31.2 8.1 181 46-246 816-1016(1549)
121 KOG0213 Splicing factor 3b, su 28.5 6.6E+02 0.014 26.7 10.7 88 27-114 780-872 (1172)
122 COG5218 YCG1 Chromosome conden 28.1 4.4E+02 0.0095 27.2 9.2 83 25-107 67-156 (885)
123 PF02854 MIF4G: MIF4G domain; 27.9 3.2E+02 0.0069 21.9 7.5 83 29-112 1-84 (209)
124 KOG1242 Protein containing ada 27.7 2.1E+02 0.0046 28.8 7.0 28 82-109 294-321 (569)
125 KOG0414 Chromosome condensatio 27.7 4E+02 0.0087 29.3 9.3 65 46-110 359-426 (1251)
126 KOG0915 Uncharacterized conser 27.6 9.7E+02 0.021 27.4 14.1 110 42-169 994-1108(1702)
127 KOG4653 Uncharacterized conser 27.4 1.1E+02 0.0024 32.3 5.1 78 46-123 727-812 (982)
128 KOG1242 Protein containing ada 27.2 2.1E+02 0.0046 28.8 6.9 51 24-75 270-324 (569)
129 KOG1248 Uncharacterized conser 26.9 5.9E+02 0.013 28.0 10.4 95 8-103 785-889 (1176)
130 KOG2025 Chromosome condensatio 26.6 4.7E+02 0.01 27.4 9.3 85 27-111 64-154 (892)
131 KOG1820 Microtubule-associated 26.6 6.1E+02 0.013 26.8 10.4 97 26-124 353-455 (815)
132 PF11707 Npa1: Ribosome 60S bi 25.9 5.2E+02 0.011 23.7 9.6 14 157-170 129-142 (330)
133 PF14868 DUF4487: Domain of un 25.4 1.9E+02 0.004 29.1 6.3 70 40-109 473-549 (559)
134 KOG0414 Chromosome condensatio 24.3 1E+03 0.022 26.4 12.9 113 3-115 214-344 (1251)
135 KOG2213 Apoptosis inhibitor 5/ 23.9 82 0.0018 30.4 3.3 52 40-93 55-106 (460)
136 KOG1243 Protein kinase [Genera 23.3 6.2E+02 0.013 26.2 9.4 106 8-115 293-401 (690)
137 PF11841 DUF3361: Domain of un 23.3 4.4E+02 0.0096 22.0 8.1 85 28-112 37-131 (160)
138 cd00864 PI3Ka Phosphoinositide 23.1 4.2E+02 0.009 21.6 7.6 45 6-51 4-48 (152)
139 PF12460 MMS19_C: RNAPII trans 22.4 6.6E+02 0.014 23.7 18.7 189 10-247 192-394 (415)
140 PF10363 DUF2435: Protein of u 22.1 3.4E+02 0.0074 20.2 8.1 60 20-79 15-76 (92)
141 PF08167 RIX1: rRNA processing 22.0 4.4E+02 0.0096 21.5 9.8 75 138-246 22-96 (165)
142 TIGR02270 conserved hypothetic 22.0 7.1E+02 0.015 23.8 13.1 55 49-110 120-174 (410)
143 KOG0994 Extracellular matrix g 21.9 1.2E+03 0.025 26.3 13.4 95 79-174 1559-1668(1758)
144 PF05055 DUF677: Protein of un 21.5 6.7E+02 0.015 23.4 13.1 60 7-72 13-74 (336)
145 COG1043 LpxA Acyl-[acyl carrie 21.4 2.1E+02 0.0044 25.9 5.1 48 23-73 207-254 (260)
146 COG5110 RPN1 26S proteasome re 21.3 1.9E+02 0.0042 29.4 5.3 67 10-77 49-126 (881)
147 PF04063 DUF383: Domain of unk 21.3 1.9E+02 0.004 24.8 4.8 52 26-79 85-136 (192)
148 PF04388 Hamartin: Hamartin pr 21.3 5.2E+02 0.011 26.5 8.7 54 61-114 83-142 (668)
149 PF05327 RRN3: RNA polymerase 21.2 8.2E+02 0.018 24.3 11.4 89 6-95 31-123 (563)
150 KOG0166 Karyopherin (importin) 21.1 5.5E+02 0.012 25.6 8.4 114 45-170 363-485 (514)
151 PF14764 SPG48: AP-5 complex s 20.4 4.6E+02 0.01 25.7 7.7 35 60-94 282-316 (459)
No 1
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=100.00 E-value=4.6e-41 Score=296.53 Aligned_cols=146 Identities=32% Similarity=0.552 Sum_probs=120.4
Q ss_pred hhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHH
Q 025778 91 FLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (248)
Q Consensus 91 lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (248)
||+|+|+.|+|++|+|++++||.+| +|++ .+++++++|++|+++|++|++ +|+++|+|||++|+||+|+||
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~-----~~i~---~~~~~~~~W~~~~~lK~~Il~-~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVF-----RWIC---VNPSDEQLWESMNELKDRILS-LWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHH-----HHHS-----HHHHHHHHHHHHHHHHHHH-GGGSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHH-----HHHc---CCchHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHH
Confidence 6899999999999999999999999 6663 367899999999999999999 799999999999999999999
Q ss_pred hhccCCCCCcccccccCCcccccccccCCCCCCCChhhHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHhhC
Q 025778 171 LLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVNCLNSLCRE 248 (248)
Q Consensus 171 l~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~ss~~~~l~~a~lnsL~~iakq 248 (248)
++||+++++++.+ .++++||||++||+|||+|++++||+||+++||.||++++++. +++++++|++|||++|||+
T Consensus 72 l~qs~~~~~~~~~--~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~-i~~~~~~a~insL~~Iak~ 146 (239)
T PF11935_consen 72 LVQSPGSSDSPPR--RGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPH-ISSPLLTAIINSLSNIAKQ 146 (239)
T ss_dssp HHTS---TTS-----GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCccc--cccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHH
Confidence 9999998776543 2334799999999999999999999999999999999999776 4679999999999999985
No 2
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=99.88 E-value=8e-22 Score=198.34 Aligned_cols=192 Identities=35% Similarity=0.477 Sum_probs=179.0
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhh
Q 025778 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (248)
Q Consensus 28 ~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~ 107 (248)
.|+.+++++...++++.+||+|++.++..+....+|+++++++++++.++.+++...+++|.-++.|+ |.|.++.|.++
T Consensus 2 sl~~~~~~l~~~~~~~~~e~~~~l~el~~~~~~~i~~~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~-~~~r~~~i~~~ 80 (957)
T KOG1895|consen 2 SLSYAMHLLIDVSSSISDELLTELLELLELNDGLIRCLLVEILLEIGLKDFELCNKLVETLSPYLEDN-PIVRRQSIIKG 80 (957)
T ss_pred cHHHHHHHHhcccccccHhHHHHHHHHHhCCcchhhhhHHHHHhhhhHHHHHhhhhHHHHhhhhhcCc-hhhHHHHHhhh
Confidence 36778899988899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhccCCCCCcccccccC
Q 025778 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEG 187 (248)
Q Consensus 108 t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qt~~~~d~~~~~~~~ 187 (248)
+..+|..++++.+++.++.+ +++.+++|.+|..+|++|+. ....|+.|||.++.||+|.+|+.+|+
T Consensus 81 ~d~~~s~l~~i~~~~~~~~~-~~~~~s~w~~~~~~k~~i~~-~~~~G~v~vk~~~~~f~~~~i~~~t~------------ 146 (957)
T KOG1895|consen 81 ADVARSNLEPIVLQFLHMEK-NDLAESLWTAFHLFKDRICL-DDHQGTVGVKVLAAKFMEQSILLYTP------------ 146 (957)
T ss_pred hhhhhhccHHHHHHHHhcch-hHHHHHHHHHHHHhHHHHhh-ccccCcchhhhhHHHHHHhhhhhhcc------------
Confidence 99999999999999999999 89999999999999999995 55678999999999999999999996
Q ss_pred CcccccccccCCCCCCCChhhHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 025778 188 SKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVNCLNSL 245 (248)
Q Consensus 188 ~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~ss~~~~l~~a~lnsL~~i 245 (248)
.+++|||++++..+..|++..+..||++++++++.+ +.+.+.+|...
T Consensus 147 --------~l~~g~p~l~~~~~~~e~~~~~~~ll~~l~~p~s~~---l~~~I~~l~~~ 193 (957)
T KOG1895|consen 147 --------DLARGHPFLSYHKTSSEAEQNLSALLSQLAHPTSQS---LITVIESLLMD 193 (957)
T ss_pred --------ccccCCcccccccchHHHHHHHHHHHHHhcCchhhh---hHHHHHHHhhh
Confidence 379999999999999999999999999999998877 66666666543
No 3
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.86 E-value=0.0062 Score=60.03 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=61.8
Q ss_pred CCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHH
Q 025778 39 ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (248)
Q Consensus 39 ~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~ 118 (248)
.-|++-++-++.++.+..|.+..||++.+-=|-.+|+-++++++++.++|..||..+++..+..+=.+..++|+.=
T Consensus 52 ~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d---- 127 (556)
T PF05918_consen 52 HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD---- 127 (556)
T ss_dssp C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-----
T ss_pred hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC----
Confidence 4677777777777777777888888888877777888778888888888888887777654444433444444311
Q ss_pred hhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhh
Q 025778 119 TMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 119 a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (248)
.=..++.+=+.|.. . .++.+.||--++||+..-+.-
T Consensus 128 ----------------~k~tL~~lf~~i~~-~-~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 128 ----------------PKGTLTGLFSQIES-S-KSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp ----------------HHHHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGG
T ss_pred ----------------cHHHHHHHHHHHHh-c-ccCchHHHHHHHHHHHHHHhh
Confidence 01122233333332 1 346677888899988544443
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.75 E-value=0.038 Score=53.08 Aligned_cols=99 Identities=23% Similarity=0.299 Sum_probs=77.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhh-HHHH
Q 025778 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI-LMPV 87 (248)
Q Consensus 9 ~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~-~l~~ 87 (248)
++..+.....+++-..+.-.|+.+-.+. +|++++.++|.+..+..++++.|||-.+--+..+++.+++.+.. .++.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~ 156 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPK 156 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444555555566556666666666643 78888999999988888889999999999888899999988877 6999
Q ss_pred HHHhhccCChHHHHHHHHhhhhh
Q 025778 88 LLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 88 L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+..+|.|.|+.|+..|+.+...+
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHH
Confidence 99999999999988888777766
No 5
>PRK09687 putative lyase; Provisional
Probab=96.18 E-value=0.32 Score=44.01 Aligned_cols=154 Identities=12% Similarity=-0.052 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMP 86 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~ 86 (248)
++..++..+..+.|...+.....-+-++= ..+.-.++.+|-+..+ ..|++..||+..++.+...|.......+.+++
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg--~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~ 131 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLG--MAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVE 131 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHH
Confidence 34455555444455434433333333321 1111134566655554 56788888888888888887766666677777
Q ss_pred HHHHhhccCChHHHHHHHHhhhhh-hHHHHHHHhhHhhhcCCccchH--HHHHHHHHHHH-------HHHHHHhccCCCc
Q 025778 87 VLLAFLRDGDSGVAGKSIVCGTNF-FCRVLEEITMQFRWHGKVERWL--EELWTWMVRFK-------DAVFAIALEPGLV 156 (248)
Q Consensus 87 ~L~~lL~d~~~~V~K~aI~~~t~l-Y~~~l~~~a~~~~~~~~~~~~~--~~~W~~m~~lK-------~~Il~~~~d~~n~ 156 (248)
.+...+.|+++.|-+.++.+.+.+ -+.+++.+. +.+ ..+ ++. ......+..++ ..+.. +++..+.
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~-~~L-~d~--~~~VR~~A~~aLg~~~~~~~~~~~~L~~-~L~D~~~ 206 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVINDEAAIPLLI-NLL-KDP--NGDVRNWAAFALNSNKYDNPDIREAFVA-MLQDKNE 206 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHH-HHh-cCC--CHHHHHHHHHHHhcCCCCCHHHHHHHHH-HhcCCCh
Confidence 777778888888887777777543 122332221 222 111 122 22333333332 23445 5577888
Q ss_pred chHHHHHHHHhH
Q 025778 157 GTKLLALKFLET 168 (248)
Q Consensus 157 Gvr~~aiKF~e~ 168 (248)
.||..|+..+.+
T Consensus 207 ~VR~~A~~aLg~ 218 (280)
T PRK09687 207 EIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHHHc
Confidence 999999887754
No 6
>PTZ00429 beta-adaptin; Provisional
Probab=95.94 E-value=0.62 Score=47.89 Aligned_cols=173 Identities=10% Similarity=0.072 Sum_probs=93.2
Q ss_pred cCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHH
Q 025778 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (248)
Q Consensus 38 ~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~ 117 (248)
+.+|++.--....+..--.|+++.+|-.-+.++. |.+.++++..+++.+...+.|.+|.|-|.|+.|...+|+.-=+.
T Consensus 97 ~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs--~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel 174 (746)
T PTZ00429 97 RLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMM--CIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL 174 (746)
T ss_pred ccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc
Confidence 3567654344444443334677777777766554 34557777777788888888888888888888888888742211
Q ss_pred HhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhccCCCCCcccc--cc----cCCccc
Q 025778 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENF--TK----EGSKQT 191 (248)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qt~~~~d~~~~--~~----~~~~~d 191 (248)
+. +..|- +.+.. +++..|.+|..+|+..+..+---. ++.-+...+ .+ -..-++
T Consensus 175 v~-------------~~~~~------~~L~~-LL~D~dp~Vv~nAl~aL~eI~~~~-~~~l~l~~~~~~~Ll~~L~e~~E 233 (746)
T PTZ00429 175 FY-------------QQDFK------KDLVE-LLNDNNPVVASNAAAIVCEVNDYG-SEKIESSNEWVNRLVYHLPECNE 233 (746)
T ss_pred cc-------------ccchH------HHHHH-HhcCCCccHHHHHHHHHHHHHHhC-chhhHHHHHHHHHHHHHhhcCCh
Confidence 10 11111 22333 345566666666666555553211 000000000 00 000001
Q ss_pred cc-------c-cccCCCCCCCChhhHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 025778 192 FN-------I-SWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVNCLNSL 245 (248)
Q Consensus 192 ~s-------l-~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~ss~~~~l~~a~lnsL~~i 245 (248)
|+ + ...|.+ +.|+..+++.++..|++. |+.++++++.++..+
T Consensus 234 W~Qi~IL~lL~~y~P~~---------~~e~~~il~~l~~~Lq~~---N~AVVl~Aik~il~l 283 (746)
T PTZ00429 234 WGQLYILELLAAQRPSD---------KESAETLLTRVLPRMSHQ---NPAVVMGAIKVVANL 283 (746)
T ss_pred HHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHh
Confidence 11 0 011221 457889999999999854 567788888876654
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.72 E-value=0.19 Score=51.42 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhH-
Q 025778 7 DQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL- 84 (248)
Q Consensus 7 ~~~~~lln~A~~~-~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~- 84 (248)
++.+-.+|.=..- .|..+.+... ..|.+-.=+++++++++++.+.+.-.|+++.|||-.+--+.+..+-++++....
T Consensus 88 ~~~lLavNti~kDl~d~N~~iR~~-AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g 166 (757)
T COG5096 88 ELALLAVNTIQKDLQDPNEEIRGF-ALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG 166 (757)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHH-HHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc
Confidence 4444444444322 2222444443 345555557888999999999999999999999999999999998888887554
Q ss_pred -HHHHHHhhccCChHHHHHHHHhhhhhhHH
Q 025778 85 -MPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (248)
Q Consensus 85 -l~~L~~lL~d~~~~V~K~aI~~~t~lY~~ 113 (248)
+..+..|+.|+||.|+..|..+...++|.
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67788889999999999999999999998
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.72 E-value=0.22 Score=47.83 Aligned_cols=138 Identities=16% Similarity=0.101 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh-----------
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----------- 75 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~----------- 75 (248)
.++...+++-+ .+..+|.+.++++--+...+++ .+.++++++.+..+.+.++||-+==++.....
T Consensus 7 ~el~~~~~~~~--~~~~~~~~~l~kli~~~~~G~~--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n 82 (526)
T PF01602_consen 7 QELAKILNSFK--IDISKKKEALKKLIYLMMLGYD--ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIIN 82 (526)
T ss_dssp HHHHHHHHCSS--THHHHHHHHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 34455555544 4666788888887766654432 24677778888667788888877655554442
Q ss_pred ------------------------hhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccch
Q 025778 76 ------------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERW 131 (248)
Q Consensus 76 ------------------------~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~ 131 (248)
..++++..+++.+..++.|++|.|-|.|+.|...+|+..- +.
T Consensus 83 ~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--------------~~ 148 (526)
T PF01602_consen 83 SLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--------------DL 148 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--------------CC
T ss_pred HHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--------------HH
Confidence 1256677778888888999999999999999999998522 11
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHH
Q 025778 132 LEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (248)
Q Consensus 132 ~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (248)
.+..| -+.+.+ ++.+.+.||+.+|+.++..+
T Consensus 149 ~~~~~------~~~l~~-lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 149 VEDEL------IPKLKQ-LLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHGGH------HHHHHH-HTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHH------HHHHhh-hccCCcchhHHHHHHHHHHH
Confidence 11112 334455 55667799999999999877
No 9
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=95.36 E-value=0.051 Score=46.19 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=63.7
Q ss_pred chHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 42 ~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
++...|++.|+++..+++..+|...+++++-+.+.---++..++|+|..|..|+++.+-++|......++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999988888888999999999999999999999988877763
No 10
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.96 E-value=0.2 Score=51.17 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=75.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh---------------------
Q 025778 17 NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--------------------- 75 (248)
Q Consensus 17 ~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~--------------------- 75 (248)
...+...+|++.+|+.=--...+++ ++.++|.|+-+-..++.|+||.+=-+++-..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N 105 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPN 105 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCC
Confidence 3344556899999988776666665 78999999977668899999988665553321
Q ss_pred --------------hhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHH
Q 025778 76 --------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (248)
Q Consensus 76 --------------~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~ 113 (248)
+..+++..+++.+..+++|+++.|-|.|+.|.+.+|+.
T Consensus 106 ~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 106 EEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 33578889999999999999999999999999999953
No 11
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.73 E-value=0.27 Score=41.22 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHhhccCChHHHHH
Q 025778 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-SILMPVLLAFLRDGDSGVAGK 102 (248)
Q Consensus 24 ~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~-~~~l~~L~~lL~d~~~~V~K~ 102 (248)
.|...+...-++.. ..|++++.++|.+...=.|+++.||+...-.+......+.-.. ...+..+..++.|+|+.|...
T Consensus 4 vR~n~i~~l~DL~~-r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 4 VRNNAIIALGDLCI-RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHH-hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 46666777777885 8899999999998877779999999998887777666554443 444466677789999988877
Q ss_pred HHHhhhhhh
Q 025778 103 SIVCGTNFF 111 (248)
Q Consensus 103 aI~~~t~lY 111 (248)
|..++..+.
T Consensus 83 A~~~~~e~~ 91 (178)
T PF12717_consen 83 ARSFFSELL 91 (178)
T ss_pred HHHHHHHHH
Confidence 776665443
No 12
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.34 E-value=2.8 Score=41.04 Aligned_cols=146 Identities=19% Similarity=0.199 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC--chH--HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh-
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP--SLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS- 81 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p--~ll--~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~- 81 (248)
.+..+.|.....+++...|...+++++.++-+++. .++ +++++.++..-.+++.+|.+-.+..|..+++...++-
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 45566666666666666666666777666643322 111 4556666555556777777777777777765433221
Q ss_pred ---hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHH--HHHHHHHHhccCCCc
Q 025778 82 ---SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVR--FKDAVFAIALEPGLV 156 (248)
Q Consensus 82 ---~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~d~~n~ 156 (248)
+..+..|..++...+..+--|+..+.+.+.. . .++.++.+.. +-+.+++ -++++..
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~-------------~-----S~~~~~~~~~sgll~~ll~-eL~~dDi 216 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS-------------H-----SPEAAEAVVNSGLLDLLLK-ELDSDDI 216 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh-------------c-----CHHHHHHHHhccHHHHHHH-HhcCccH
Confidence 2225566666655455554443333222211 0 1333333333 5556666 4455555
Q ss_pred chHHHHHHHHhHHHh
Q 025778 157 GTKLLALKFLETHVL 171 (248)
Q Consensus 157 Gvr~~aiKF~e~vIl 171 (248)
=+|+.|+..+..+..
T Consensus 217 Lvqlnalell~~La~ 231 (503)
T PF10508_consen 217 LVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHHHHHHHHHc
Confidence 677777776655543
No 13
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.18 E-value=0.11 Score=37.48 Aligned_cols=56 Identities=25% Similarity=0.423 Sum_probs=42.2
Q ss_pred HHHHhc-cCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 49 PYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 49 ~~il~~-~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
|.+++. ..+++..+|...+..+.+.+. .++++.|..++.|+|+.|...++.+.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 445543 368899999998888884432 36688888888999999988888877755
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=94.12 E-value=1.4 Score=45.40 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=77.1
Q ss_pred CCChHHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCCh
Q 025778 19 HGDLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS 97 (248)
Q Consensus 19 ~~d~~~k~~~L~q~relll~~-~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~ 97 (248)
..|..+|.+.++++--....+ |- ..+++.++.+-...+.++||.+--++...++.++|++.-++.++..=+.|.||
T Consensus 43 s~~~~~kk~alKkvIa~mt~G~Dv---S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np 119 (746)
T PTZ00429 43 GTDSYRKKAAVKRIIANMTMGRDV---SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSP 119 (746)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCH
Confidence 446668888888887776433 33 56777788776778999999999999988888999999999999988999999
Q ss_pred HHHHHHHHhhhhh-hHHHHHHH
Q 025778 98 GVAGKSIVCGTNF-FCRVLEEI 118 (248)
Q Consensus 98 ~V~K~aI~~~t~l-Y~~~l~~~ 118 (248)
.|-=-|+.+++++ .+..++++
T Consensus 120 ~IRaLALRtLs~Ir~~~i~e~l 141 (746)
T PTZ00429 120 VVRALAVRTMMCIRVSSVLEYT 141 (746)
T ss_pred HHHHHHHHHHHcCCcHHHHHHH
Confidence 9998999988855 45555444
No 15
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.08 E-value=0.55 Score=40.26 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=100.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCchHHhhhHH-------HHhccCCchhHHHHHHHHHHHHHhhh---h
Q 025778 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPSLAAELFPY-------LVELQSSPESLVRKSLIETIEDIGLK---A 77 (248)
Q Consensus 9 ~~~lln~A~~~~d~~~k~~~L~q~relll~~-~p~ll~~~l~~-------il~~~~~~~~~vrk~~~~fiee~~~~---~ 77 (248)
+...|..-....|=.++.+.|.++|.++.+. .....+.|++. +..--.|..+.|-+....++.+.+.. +
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 3445555345578889999999999999866 23344444443 33333455667778888888877642 2
Q ss_pred -hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHH-HHHHHHHhccCCC
Q 025778 78 -MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAIALEPGL 155 (248)
Q Consensus 78 -~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~l-K~~Il~~~~d~~n 155 (248)
..++..+++.|...+.|....|...|-.|...++..+= . ...+ ...+.. ...+.|
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------------~----------~~~~~~~~l~~-~~~~Kn 144 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS------------Y----------SPKILLEILSQ-GLKSKN 144 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------------H------------HHHHHHHHH-HTT-S-
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------------c----------HHHHHHHHHHH-HHhCCC
Confidence 34578899999999999887777777666655543110 0 0022 333444 668999
Q ss_pred cchHHHHHHHHhHHHhhccCCCCCcccccccCCcccccc-cccCCCCCCC--ChhhHHHHHHHHHHHHHHHhhh
Q 025778 156 VGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNI-SWLSGGHPFL--DPVSLTSEANRMLGTLMDLLQS 226 (248)
Q Consensus 156 ~Gvr~~aiKF~e~vIl~qt~~~~d~~~~~~~~~~~d~sl-~~vP~~Hp~l--~~~~Le~Ea~~lL~~LL~~l~~ 226 (248)
..+|..|..++..++..+......- .. ...+ ..+|.-.+.+ ..+..++.|...|..+-+...+
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~l---~~-----~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSVL---QK-----SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GGG----------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHccchHhhh---cc-----cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 9999999999998887765111100 00 0001 1122222233 1256777778887777766663
No 16
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.86 E-value=0.31 Score=37.28 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=51.7
Q ss_pred chHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh----hhhhhhHHHHHHHhhccCChHHHHHH
Q 025778 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSGVAGKS 103 (248)
Q Consensus 42 ~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~----~e~~~~~l~~L~~lL~d~~~~V~K~a 103 (248)
..+++++|.++..-.|++..||....+-+-.+++.. ..+...+.+.|..+..|.|+.|...|
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 466899999998888999999999999999888643 34568999999999999999876543
No 17
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.86 E-value=0.72 Score=33.10 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=53.9
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHh
Q 025778 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (248)
Q Consensus 12 lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~l 91 (248)
|++.....+|...|....+.+.++ ++ ++.+|.++++-.|+++.||...+..++.++ -.++++.|..+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~ 70 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL---GD----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKL 70 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC---TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc---CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 344443567766666655555532 23 366676766667999999999999999775 24577788888
Q ss_pred hccCChH-HHHHHHHhh
Q 025778 92 LRDGDSG-VAGKSIVCG 107 (248)
Q Consensus 92 L~d~~~~-V~K~aI~~~ 107 (248)
+.+++.. |-+.++.+.
T Consensus 71 l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTC-SSHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhc
Confidence 8776544 445555543
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.65 E-value=0.33 Score=36.30 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=50.5
Q ss_pred hhHHHHhccCCchhHHHHHHHHHHHHHhhhhh----hhh-hhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHS-SILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 47 ~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~----e~~-~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
.+|.++++-.+.+.++|+..+..+...|...+ +.. ..+++.+..++.|+++.|.+.++.+.+++-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 55666666556678999999999999887532 222 378889999999999999999888888774
No 19
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.46 E-value=0.58 Score=35.46 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=56.6
Q ss_pred hHHHHhccCCchhHHHHHHHHHHHHHhhhhh---hhhhhHHHHHHHhhccCChHHHHHHHHhhhh---hhHH-HHHHHhh
Q 025778 48 FPYLVELQSSPESLVRKSLIETIEDIGLKAM---EHSSILMPVLLAFLRDGDSGVAGKSIVCGTN---FFCR-VLEEITM 120 (248)
Q Consensus 48 l~~il~~~~~~~~~vrk~~~~fiee~~~~~~---e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~---lY~~-~l~~~a~ 120 (248)
+.+.++--.|+.+.+|-++.-.+.....+.. .....++..+...|+|+|+-|+=.||++.+. .||. ++..++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 4455555578888999999988887776443 5568888888999999999999999998774 4665 6655554
Q ss_pred Hh
Q 025778 121 QF 122 (248)
Q Consensus 121 ~~ 122 (248)
++
T Consensus 85 ~y 86 (92)
T PF10363_consen 85 EY 86 (92)
T ss_pred HH
Confidence 44
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.37 E-value=1.4 Score=32.88 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCC---chHH-hhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh---hh--hhHHHHHHH
Q 025778 20 GDLAVKLSSLKQVRGILSSADP---SLAA-ELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLA 90 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p---~ll~-~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e---~~--~~~l~~L~~ 90 (248)
++...+...+..+..+..+.++ .+.. +++|.++++-.+++..+|+..+..+..++...++ .. ..+++.|..
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 3455788888888888753211 1333 7778888776678899999999999999865432 22 336888899
Q ss_pred hhccCChHHHHHHHHhhhhh
Q 025778 91 FLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 91 lL~d~~~~V~K~aI~~~t~l 110 (248)
++.+.+..+.+.+..+..++
T Consensus 99 ~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 99 LLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHh
Confidence 99999999999988888765
No 21
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=0.78 Score=46.85 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=76.9
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhc-cCCchhHHHHHHHHHHHHHh-h---------------
Q 025778 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIG-L--------------- 75 (248)
Q Consensus 13 ln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~-~~~~~~~vrk~~~~fiee~~-~--------------- 75 (248)
+.++...+|..+|++.++++--+++++++ +|+++-.|+-| -+.++.+++|.+-=|.| ++ |
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~--~p~Llm~IiRfvlps~~~elKKLly~ywE-~vPKt~~dgkl~~EMILvc 101 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGED--LPSLLMTIIRFVLPSRNHELKKLLYYYWE-LVPKTDSDGKLLHEMILVC 101 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCC--chHHHHHHhheeeccCchHHHHHHHHHHH-HccccCCCcccHHHHHHHH
Confidence 45666678888999999999999998765 45666667766 34667788888765443 22 1
Q ss_pred -------------------------hhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHH
Q 025778 76 -------------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (248)
Q Consensus 76 -------------------------~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~ 113 (248)
+.+|++-..++.++.=|+...+-|-|.||.|.-+||+.
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 33677888888888889999999999999999999998
No 22
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.17 E-value=5.7 Score=33.11 Aligned_cols=131 Identities=12% Similarity=0.077 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhh-hhhhhhhHH
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSSILM 85 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~-~~e~~~~~l 85 (248)
|+.+..+-.....++...|-..|.-+.+|+.++.-..=+.++..++..-.|++.+||.....|+.|...+ +++.....+
T Consensus 24 e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4455566666667788899999999999998543334455556666666899999999999999999877 777776666
Q ss_pred HHHHHhhccC--ChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHH
Q 025778 86 PVLLAFLRDG--DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFA 148 (248)
Q Consensus 86 ~~L~~lL~d~--~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~ 148 (248)
+-+..-|++. .+..-+....-...+|...++++. . ++..++.+.++=.+++.
T Consensus 104 ~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~----------~-d~~~~~l~~kl~~~~~~ 157 (178)
T PF12717_consen 104 PELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID----------K-DKQKESLVEKLCQRFLN 157 (178)
T ss_pred HHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC----------c-HHHHHHHHHHHHHHHHH
Confidence 6666655543 222212333445568888884442 1 45666666666555555
No 23
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.80 E-value=0.52 Score=27.99 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=19.8
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhhhhH
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~lY~ 112 (248)
++.+..+++|+++.|-+.|+.|.+.+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777777654
No 24
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.51 E-value=0.81 Score=30.38 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhh----hhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 61 LVRKSLIETIEDIGLK----AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 61 ~vrk~~~~fiee~~~~----~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
.||+..+..|.+++.. ...+.+.+++.|..+|+|+++.|-..+.-+.++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5777777777755432 2457789999999999999999987777776654
No 25
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=4.6 Score=41.71 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=77.5
Q ss_pred CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHh
Q 025778 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEIT 119 (248)
Q Consensus 40 ~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a 119 (248)
=|.+.|.++-.|-+...|+++.|||-.|.-|-..-.-+++.=.++++.+..||.|.+|.|+-.|+.++..+||.=|+++-
T Consensus 137 vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH 216 (968)
T KOG1060|consen 137 VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH 216 (968)
T ss_pred hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh
Confidence 45556666666667788999999999999888776666655559999999999999999999999999999999997775
Q ss_pred hHhhh-cCCccchHHHHHHHHHHHHH
Q 025778 120 MQFRW-HGKVERWLEELWTWMVRFKD 144 (248)
Q Consensus 120 ~~~~~-~~~~~~~~~~~W~~m~~lK~ 144 (248)
+.+.. |.-. -+-+.|.....|+-
T Consensus 217 knyrklC~ll--~dvdeWgQvvlI~m 240 (968)
T KOG1060|consen 217 KNYRKLCRLL--PDVDEWGQVVLINM 240 (968)
T ss_pred HHHHHHHhhc--cchhhhhHHHHHHH
Confidence 43332 2111 12456776665543
No 26
>PRK09687 putative lyase; Provisional
Probab=89.96 E-value=2.1 Score=38.71 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=68.5
Q ss_pred HHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhH
Q 025778 6 RDQALSLLAAA-NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (248)
Q Consensus 6 ~~~~~~lln~A-~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (248)
.++++.+|... ...+|...+-.....+-++- ...+...+.+++.+.....|++..||+..+.-+.+++ + ..+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~----~~a 160 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRC-KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--D----EAA 160 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--C----HHH
Confidence 46777777766 44477767777777776653 2334345566666666667888889988887775443 1 346
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
++.|..+|+|+|+.|-+.++.+.+.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 77888888888888888888888876
No 27
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.20 E-value=15 Score=32.25 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=66.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhc--------c--CCchhHHHHHHHHHHHHHhhhhh
Q 025778 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL--------Q--SSPESLVRKSLIETIEDIGLKAM 78 (248)
Q Consensus 9 ~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~--------~--~~~~~~vrk~~~~fiee~~~~~~ 78 (248)
+++.|..=...+....+--.++..-.+.. .++..+ .++..++.+ . .+...+...-.+--+.++|..+|
T Consensus 39 v~~~L~~L~~~~~~~~~~~~~rLl~~lw~-~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p 116 (234)
T PF12530_consen 39 VLQTLVSLVEQGSLELRYVALRLLTLLWK-ANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRP 116 (234)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHH-hCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh
Confidence 34444443433333223345566666664 555444 344445444 1 12233444445568889999999
Q ss_pred hhhhhHHHHHHHhh-ccCChHHHHHHHHhhhhhhHHHH
Q 025778 79 EHSSILMPVLLAFL-RDGDSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 79 e~~~~~l~~L~~lL-~d~~~~V~K~aI~~~t~lY~~~l 115 (248)
++-..++..+...| .+.++.+.--++++.+.+.+.-.
T Consensus 117 ~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 117 DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 98899999999999 78888888899998888876554
No 28
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.89 E-value=0.8 Score=27.18 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=23.6
Q ss_pred hhHHHHhccCCchhHHHHHHHHHHHHHhh
Q 025778 47 LFPYLVELQSSPESLVRKSLIETIEDIGL 75 (248)
Q Consensus 47 ~l~~il~~~~~~~~~vrk~~~~fiee~~~ 75 (248)
++|.+++.-.|++.+||...+.-+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46778888889999999999998887764
No 29
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.64 E-value=4.5 Score=42.93 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCC----chHHhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhhhhhhh--hHHHHHHHhhccCCh
Q 025778 25 KLSSLKQVRGILSSADP----SLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSS--ILMPVLLAFLRDGDS 97 (248)
Q Consensus 25 k~~~L~q~relll~~~p----~ll~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~~e~~~--~~l~~L~~lL~d~~~ 97 (248)
+++.|.+.|.... ..- +++..+++++.-- =.|-.+++|--+++.|..-++..|++.. -.+..+-=.|.|.+.
T Consensus 262 rle~Ll~~r~etq-e~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~ 340 (1048)
T KOG2011|consen 262 RLESLLMLRKETQ-EQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNG 340 (1048)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCcc
Confidence 4777777777664 322 2556666666311 2456789999999999988899998763 333334444899999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhcc-CCCcchHHHHHHHH
Q 025778 98 GVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALE-PGLVGTKLLALKFL 166 (248)
Q Consensus 98 ~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d-~~n~Gvr~~aiKF~ 166 (248)
.|-++++.+.-.+|-. +.....+=.-.+.||++|+. |.+ ..+.|||...++-.
T Consensus 341 ~VRl~~lkaL~~L~e~---------------~~~~~~L~lFtsRFK~RIVe-Madrd~~~~Vrav~L~~~ 394 (1048)
T KOG2011|consen 341 TVRLRCLKALIKLYEK---------------DEDKDKLELFTSRFKDRIVE-MADRDRNVSVRAVGLVLC 394 (1048)
T ss_pred HHHHHHHHHHHHHHhc---------------cccchHHHHHHHHHHHHHHH-HHhhhcchhHHHHHHHHH
Confidence 9999999998888864 11223334456799999999 555 78899999888755
No 30
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.05 E-value=25 Score=34.43 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHH----hhhHHHHhccCC-chhHHHHHHHHHHHHHhhhhhh
Q 025778 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAA----ELFPYLVELQSS-PESLVRKSLIETIEDIGLKAME 79 (248)
Q Consensus 5 ~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~----~~l~~il~~~~~-~~~~vrk~~~~fiee~~~~~~e 79 (248)
..+.|.++|++-..+-.+.++=+.|.+..+++-++.=++-. ++|..++|.-.| .+.-.|+.....|+|+|+..+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 35678888888877755667888888899988766555444 455555676667 6667888888999999987654
Q ss_pred hh----hhHHHHHHHhhccCChHHHHHHHHhhhhhhH
Q 025778 80 HS----SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 80 ~~----~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~ 112 (248)
.+ --++..++.--.|.++.|++-|-+++..+--
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~la 400 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLA 400 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 43 2233334444557888899888888765443
No 31
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.72 E-value=6.1 Score=43.42 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHhc-------CCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh--hhHHHHHHHhhccCChH
Q 025778 28 SLKQVRGILSS-------ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--SILMPVLLAFLRDGDSG 98 (248)
Q Consensus 28 ~L~q~relll~-------~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~--~~~l~~L~~lL~d~~~~ 98 (248)
+=.++||-+++ .+|++.++|++.+.+=..|...-|||-++..++++|-..|.+. +.+..-+..-.+||--.
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhH
Confidence 33455555543 2899999999999999999999999999999999998776543 44444444445566555
Q ss_pred HHHHHHHhhh
Q 025778 99 VAGKSIVCGT 108 (248)
Q Consensus 99 V~K~aI~~~t 108 (248)
|.|-+-.++.
T Consensus 947 I~kLv~etf~ 956 (1692)
T KOG1020|consen 947 IKKLVRETFL 956 (1692)
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 32
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.65 E-value=5.4 Score=39.72 Aligned_cols=131 Identities=14% Similarity=0.058 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcC-CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHH
Q 025778 26 LSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (248)
Q Consensus 26 ~~~L~q~relll~~-~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI 104 (248)
++.|.+..+.+-+. |.+==.+-+-.||+.. ..+...++..+.||-..++.-|++...+++++..|.+|+|+.|-+.||
T Consensus 2 ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~-kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai 80 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKSQHEEDYKEILDGV-KGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI 80 (556)
T ss_dssp HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGG-GS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCCcccCHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45566666666421 2111123444566554 356889999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHH-------HHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHh
Q 025778 105 VCGTNFFCRVL-------EEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (248)
Q Consensus 105 ~~~t~lY~~~l-------~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e 167 (248)
-..-.+.+..= +.++ |.+. .+-=.-+...|..+.+ ++..++-|+=..-.+.++
T Consensus 81 k~lp~~ck~~~~~v~kvaDvL~-QlL~--------tdd~~E~~~v~~sL~~-ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 81 KGLPQLCKDNPEHVSKVADVLV-QLLQ--------TDDPVELDAVKNSLMS-LLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHGGGG--T--T-HHHHHHHHH-HHTT-----------HHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhHHHHHHH-HHHh--------cccHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 98888776432 2222 3332 1112234566666666 556666666666665554
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.91 E-value=21 Score=30.39 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCCchHHhh-hHHHHhccCCchhHHHHHHHHHHHHHhhhhh---h------hhhhHHHHHHHhhccCC
Q 025778 27 SSLKQVRGILSSADPSLAAEL-FPYLVELQSSPESLVRKSLIETIEDIGLKAM---E------HSSILMPVLLAFLRDGD 96 (248)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~-l~~il~~~~~~~~~vrk~~~~fiee~~~~~~---e------~~~~~l~~L~~lL~d~~ 96 (248)
..-+-...++. .-+ +.+.+ ++.+.....++++.+|..++.++..+..+.+ . ....+++.+..++.|.+
T Consensus 113 ~a~~~L~~i~~-~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~ 190 (228)
T PF12348_consen 113 AANNALDAIIE-SCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDAD 190 (228)
T ss_dssp HHHHHHHHHHT-TS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHH-HCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCC
Confidence 33333444443 222 33555 4444455678999999999999998876544 1 23678899999999999
Q ss_pred hHHHHHHHHhhhhhhHHH
Q 025778 97 SGVAGKSIVCGTNFFCRV 114 (248)
Q Consensus 97 ~~V~K~aI~~~t~lY~~~ 114 (248)
+.|-+.+-.++..+|...
T Consensus 191 ~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 191 PEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 999877777777776653
No 34
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.02 E-value=1.4 Score=47.69 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhc---cCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCC
Q 025778 20 GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL---QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~---~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~ 96 (248)
.+.+.+++.++...+.++ .+|+...+.-- .+.+ -.|...++|+.++=-+-++.+...++.+.++.-+...++|.-
T Consensus 312 ~~~~vR~~~v~~~~~~l~-~~~~~~~~~~~-~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk 389 (1266)
T KOG1525|consen 312 ISVEVRMECVESIKQCLL-NNPSIAKASTI-LLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKK 389 (1266)
T ss_pred CChhhhhhHHHHhHHHHh-cCchhhhHHHH-HHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhh
Confidence 344578888888888887 47765533222 3333 355666777766544444445556666667788888899999
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 025778 97 SGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTK 159 (248)
Q Consensus 97 ~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr 159 (248)
..|-|.||..++.+|..+.... +......|..+..|++.+|. .++-.+...|
T Consensus 390 ~~VR~~Am~~LaqlYk~~~~~~----------~~~~k~~t~~~swIp~kLL~-~~y~~~~~~r 441 (1266)
T KOG1525|consen 390 IKVRKQAMNGLAQLYKNVYCLR----------SAGGKEITPPFSWIPDKLLH-LYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----------ccCcccccccccccchhHHh-hHhhccccHH
Confidence 9999999999999999876221 22357889999999999999 5555546666
No 35
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=84.83 E-value=5.2 Score=34.21 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=53.5
Q ss_pred CchHHhhhHHHHhccCCchhHHHHHHHHHHHH-HhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 41 PSLAAELFPYLVELQSSPESLVRKSLIETIED-IGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 41 p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee-~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
..+|+-|++++-|..+.-..--++=+.++++. ...+-.-.+++++..|..-|+..|+.|.+.+..+...+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45889999999887655555566666677776 22334566799999999999999999999998887776
No 36
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.48 E-value=4.3 Score=41.52 Aligned_cols=66 Identities=29% Similarity=0.310 Sum_probs=57.0
Q ss_pred CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHH
Q 025778 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIV 105 (248)
Q Consensus 40 ~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~ 105 (248)
-|+|...+-+.++-+-+..-+-+||-.+..+-.+|.++||-+..+.+.|..=|+|+||+|+--|+-
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~ 203 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVS 203 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHH
Confidence 477778888888777666677899999999999999999999999999999999999998765554
No 37
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=82.42 E-value=20 Score=32.30 Aligned_cols=97 Identities=6% Similarity=-0.028 Sum_probs=63.0
Q ss_pred hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh----------hhhhhhhhHHHHHHHhhc--------cCChHHHHHHH
Q 025778 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL----------KAMEHSSILMPVLLAFLR--------DGDSGVAGKSI 104 (248)
Q Consensus 43 ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~----------~~~e~~~~~l~~L~~lL~--------d~~~~V~K~aI 104 (248)
..+-++|.+|.+.-|.+.++|.++...+..... +++.+....-+.|.-.+. ++.+.++..+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 456788989988888899999999998776654 223334444444444444 66778888888
Q ss_pred HhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhc
Q 025778 105 VCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIAL 151 (248)
Q Consensus 105 ~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~ 151 (248)
-|...+|+..+ . ++.....+.....+.+.|++.+.
T Consensus 196 ~~L~~L~~~~~---------~---~~~~~r~~~l~~~l~e~IL~~~~ 230 (282)
T PF10521_consen 196 PALLSLLKTQE---------N---DDSNPRSTWLDKILREGILSSME 230 (282)
T ss_pred HHHHHHHHhhc---------c---CCcccchHHHHHHHHHHHhhhce
Confidence 88888877665 1 22333444444555566887443
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=81.34 E-value=57 Score=31.94 Aligned_cols=108 Identities=22% Similarity=0.256 Sum_probs=72.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhh-----hHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhh-
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAEL-----FPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI- 83 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~-----l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~- 83 (248)
+.++-.....+|....-...+-++++.- ++.-++.+ ++.+-.+-...+..+|.-+.+++-++++..++....
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhC--CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444445555666666677777777773 23222333 555555544456778888999999999877665533
Q ss_pred ----HHHHHHHhhccCChHHHHHHHHhhhhh--hHHHHHHHh
Q 025778 84 ----LMPVLLAFLRDGDSGVAGKSIVCGTNF--FCRVLEEIT 119 (248)
Q Consensus 84 ----~l~~L~~lL~d~~~~V~K~aI~~~t~l--Y~~~l~~~a 119 (248)
.++.+...|.++|.-|...++.+.+.+ ++..++++.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~ 240 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLE 240 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 566677778899999998988887765 666664444
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=80.85 E-value=22 Score=26.96 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=52.3
Q ss_pred hhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCc
Q 025778 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (248)
Q Consensus 77 ~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~ 156 (248)
-.+++..+++.+...+.|+|+-|--.|..+..++-+.+ .++.+..+.++=+.+.+ .....+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~-----------------~~~~l~~f~~IF~~L~k-l~~D~d~ 82 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA-----------------RGEILPYFNEIFDALCK-LSADPDE 82 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH-HHcCCch
Confidence 36778899999999999999999877777666654322 24566677777777777 5566666
Q ss_pred chHHHHHHHHhH
Q 025778 157 GTKLLALKFLET 168 (248)
Q Consensus 157 Gvr~~aiKF~e~ 168 (248)
.||-+| .++-+
T Consensus 83 ~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 83 NVRSAA-ELLDR 93 (97)
T ss_pred hHHHHH-HHHHH
Confidence 788777 34443
No 40
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.63 E-value=1.7 Score=28.02 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=27.2
Q ss_pred HhcCCCchH--HhhhHHHHhccCCchhHHHHHHHHHH
Q 025778 36 LSSADPSLA--AELFPYLVELQSSPESLVRKSLIETI 70 (248)
Q Consensus 36 ll~~~p~ll--~~~l~~il~~~~~~~~~vrk~~~~fi 70 (248)
+.+.||+++ +.+...+..--.|+++.||++..++|
T Consensus 6 iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 6 IVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 346888877 47777777777899999999988864
No 41
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.18 E-value=14 Score=38.33 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh----------
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---------- 75 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~---------- 75 (248)
+++...+||.= .| .+|++.++..-.++.++.- ..+|||.++---...+++|||.|==++-.-.-
T Consensus 37 ~~dL~~lLdSn---kd-~~KleAmKRIia~iA~G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSI 110 (968)
T KOG1060|consen 37 HDDLKQLLDSN---KD-SLKLEAMKRIIALIAKGKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSI 110 (968)
T ss_pred hHHHHHHHhcc---cc-HHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeH
Confidence 45666676642 33 4899999999998875432 56888888866678889999987543332211
Q ss_pred -------------------------hhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHH
Q 025778 76 -------------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (248)
Q Consensus 76 -------------------------~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~ 113 (248)
+-+-..+.++-++....+|..|-|-|.|..+..-+|++
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 11233455666666667788888888888888888875
No 42
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.66 E-value=92 Score=33.80 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=106.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC----chHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh--hh------
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADP----SLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KA------ 77 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p----~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~--~~------ 77 (248)
-..|-+...+.+.+.|.+.|+-+.-++ ...| .+.+..+||++=+..+-+..-|+---+.|-++|+ ..
T Consensus 699 ~n~L~ds~qs~~~~~~~~rl~~L~~L~-~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e 777 (1176)
T KOG1248|consen 699 FNSLLDSFQSSSSPAQASRLKCLKRLL-KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNE 777 (1176)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccccc
Confidence 344444555555556766666666665 3455 6888899998866566666777777777777772 11
Q ss_pred --hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCC
Q 025778 78 --MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGL 155 (248)
Q Consensus 78 --~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n 155 (248)
.+.+...+..|..-+-.+.+.++=..|.+.+ ..++++- .++ + . +.+.++-+.|.. ++.+.+
T Consensus 778 ~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~---~il~e~~--~~l-----d---~---~~l~~li~~V~~-~L~s~s 840 (1176)
T KOG1248|consen 778 PASAILNEFLSIISAGLVGDSTRVVASDIVAIT---HILQEFK--NIL-----D---D---ETLEKLISMVCL-YLASNS 840 (1176)
T ss_pred chHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH---HHHHHHh--ccc-----c---H---HHHHHHHHHHHH-HHhcCC
Confidence 2344555555554444444443333244444 4444222 111 1 1 234566667777 778899
Q ss_pred cchHHHHHHHHhHHHhhccCCCCCcccccccCCcccccccccCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 025778 156 VGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQ 225 (248)
Q Consensus 156 ~Gvr~~aiKF~e~vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~ 225 (248)
--|+-+||+|+-..|..++-.-- .+..++ --.|+...-..| ..........+|++|+.-+.
T Consensus 841 reI~kaAI~fikvlv~~~pe~~l---~~~~~~--LL~sll~ls~d~----k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 841 REIAKAAIGFIKVLVYKFPEECL---SPHLEE--LLPSLLALSHDH----KIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHH---hhhHHH--HHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHhC
Confidence 99999999999988877641100 000000 011111111122 25566677788888887776
No 43
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.42 E-value=80 Score=32.95 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=93.6
Q ss_pred HHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 025778 9 ALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPV 87 (248)
Q Consensus 9 ~~~lln~A~~~-~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~ 87 (248)
+-+|++.+... .|. .+.+.|-=.+++-||+..-+++-+.++-.++-+..+.--+++||...|.+.|+.-.+.+..
T Consensus 172 apeLi~~fL~~e~Dp----sCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~ 247 (948)
T KOG1058|consen 172 APELIESFLLTEQDP----SCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRC 247 (948)
T ss_pred hHHHHHHHHHhccCc----hhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHH
Confidence 34566666654 443 5667777778888998776777776654455567788899999999999999888888888
Q ss_pred HHHhhccCChHHH-------------HHHHHhhhhhhHHHHHHHhhHhhhcCC-c--c---chHHHHHHHHHHHHHHHHH
Q 025778 88 LLAFLRDGDSGVA-------------GKSIVCGTNFFCRVLEEITMQFRWHGK-V--E---RWLEELWTWMVRFKDAVFA 148 (248)
Q Consensus 88 L~~lL~d~~~~V~-------------K~aI~~~t~lY~~~l~~~a~~~~~~~~-~--~---~~~~~~W~~m~~lK~~Il~ 148 (248)
+..+|..++++|+ -.++.++++-|-.++..... .+-+ + + .....-=..|..+--+|++
T Consensus 248 i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd---nnvklIvldrl~~l~~~~~~il~~l~mDvLr 324 (948)
T KOG1058|consen 248 IYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD---NNVKLIVLDRLSELKALHEKILQGLIMDVLR 324 (948)
T ss_pred HHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC---cchhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 8888886665543 23444455555444422210 0001 0 0 0001111224445557777
Q ss_pred HhccCCCcchHHHHHHHH
Q 025778 149 IALEPGLVGTKLLALKFL 166 (248)
Q Consensus 149 ~~~d~~n~Gvr~~aiKF~ 166 (248)
.+++.+-.||--|+-|.
T Consensus 325 -vLss~dldvr~Ktldi~ 341 (948)
T KOG1058|consen 325 -VLSSPDLDVRSKTLDIA 341 (948)
T ss_pred -HcCcccccHHHHHHHHH
Confidence 67888888887777664
No 44
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.25 E-value=60 Score=32.27 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh----hh-hhh
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----KA-MEH 80 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~----~~-~e~ 80 (248)
+.++.+||..-..+-+. +=..+..++=-|+.+++--....+|.-.++++.-.+..+|+++-.-|-..-+ ++ ...
T Consensus 18 P~el~dLL~~~~~~lp~-~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPP-ELREKIVKALILLRNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred hHHHHHHHHhccccCCH-HHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 45778888887766332 3344555666666666543334444444446556667779887665543322 22 455
Q ss_pred hhhHHHH-HHHhhccCChHHHHHHHHhhhhhhH
Q 025778 81 SSILMPV-LLAFLRDGDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 81 ~~~~l~~-L~~lL~d~~~~V~K~aI~~~t~lY~ 112 (248)
+.+++.. +..||+++|+.-.|.+..++.-+|+
T Consensus 97 lnkslq~~~fsml~~~d~~~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 97 LNKSLQAFMFSMLDQSDSTAAKMALDTMIELYK 129 (616)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 5555554 5678999999999999999999998
No 45
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=75.21 E-value=5.4 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=25.1
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 82 SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 82 ~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
..+++.|..||+++++.|.+.+.-+..++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45788899999999999999999888776
No 46
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=71.67 E-value=24 Score=37.09 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhh
Q 025778 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (248)
Q Consensus 56 ~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~ 109 (248)
.|++..||+..+..+.++.. ...++.|..+|.|+++.|-+.++.+.+.
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred cCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 45556666666666654421 3344666666777777777777666655
No 47
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=71.63 E-value=49 Score=27.83 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=49.0
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcC--CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh
Q 025778 16 ANNHGDLAVKLSSLKQVRGILSSA--DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (248)
Q Consensus 16 A~~~~d~~~k~~~L~q~relll~~--~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~ 81 (248)
....+|...+...+.=++-.+-.+ +| -+.+|.++.+..|++..+|+-....+.+.+.|++.++
T Consensus 16 ~~~~~~~~vr~~Al~~l~~il~qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 16 LCLSSDDSVRLAALQVLELILRQGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhcCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 445566556666665555555333 67 7899999999999999999999999999999998766
No 48
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.61 E-value=25 Score=36.01 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=53.4
Q ss_pred chHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh----hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhH
Q 025778 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 42 ~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~----~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~ 112 (248)
..++-++|+.++|-..+++-+|.--..-+...-.-. .-.+-+-+++|..|-+|++|.|-|.+-.++.-+-.
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 367789999999987888889987766555443322 23457778889999999999999998887765543
No 49
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.31 E-value=1.2e+02 Score=30.62 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC---chHHhhhHHHHhccCCchhHHHHHH----HHHHHHHh
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADP---SLAAELFPYLVELQSSPESLVRKSL----IETIEDIG 74 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p---~ll~~~l~~il~~~~~~~~~vrk~~----~~fiee~~ 74 (248)
..+.||++=....+...+.-.+.=.+-+-.-.+- +++|+|+|++..+-.|++.+||... .+|+.|+-
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 3455555555443333444444444433321111 2568888888888889999999543 36777775
No 50
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=70.73 E-value=61 Score=28.94 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=87.2
Q ss_pred CChHHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh-hh--hhhh-hhHHHHHHHhhcc
Q 025778 20 GDLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL-KA--MEHS-SILMPVLLAFLRD 94 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~-~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~-~~--~e~~-~~~l~~L~~lL~d 94 (248)
-|+..|+.-|+-++.+-... +..++...+|.++.+-...+..+|-.+...+--... .+ .+++ .+++..+..|+..
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc
Confidence 46678888888888886644 334667788888877666777888888887775543 22 2333 6778888888886
Q ss_pred C-ChHHHHHHHHhhhhhhHHHHHH--HhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 025778 95 G-DSGVAGKSIVCGTNFFCRVLEE--ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTK 159 (248)
Q Consensus 95 ~-~~~V~K~aI~~~t~lY~~~l~~--~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr 159 (248)
+ +..++-+++.-+.+|....-.. ++.+|-. ...+.-..|.-...+-+++.+ +.++...-||
T Consensus 187 ~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~---~~~~L~~~~~e~~~~~~~l~~-l~~h~d~ev~ 250 (254)
T PF04826_consen 187 SESKENLLRVLTFFENINENIKKEAYVFVQDDF---SEDSLFSLFGESSQLAKKLQA-LANHPDPEVK 250 (254)
T ss_pred CCccHHHHHHHHHHHHHHHhhCcccceeccccC---CchhHHHHHccHHHHHHHHHH-HHcCCCHHHh
Confidence 4 6788999999999886654421 1112221 122334555555566667776 4454444444
No 51
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=70.60 E-value=2.8 Score=44.08 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=77.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhccCCCCCcccccccCCcccccccccCCCCCCCChh
Q 025778 128 VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPV 207 (248)
Q Consensus 128 ~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~ 207 (248)
.+...+.+|+.+...=..|.. ...+.++|+++..++|+...|-++++...|...+++.. .+.+.+..+.+|+-+..+
T Consensus 18 ~~e~~~~l~el~~~~~~~i~~-~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~~~~r~~~--i~~~~d~~~s~l~~i~~~ 94 (957)
T KOG1895|consen 18 SDELLTELLELLELNDGLIRC-LLVEILLEIGLKDFELCNKLVETLSPYLEDNPIVRRQS--IIKGADVARSNLEPIVLQ 94 (957)
T ss_pred cHhHHHHHHHHHhCCcchhhh-hHHHHHhhhhHHHHHhhhhHHHHhhhhhcCchhhHHHH--HhhhhhhhhhccHHHHHH
Confidence 355678999999998899998 77899999999999999999999999877764444432 467778889999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 025778 208 SLTSEANRMLGTLMDLLQ 225 (248)
Q Consensus 208 ~Le~Ea~~lL~~LL~~l~ 225 (248)
-+-.|.+++.+.+=..+.
T Consensus 95 ~~~~~~~~~~~s~w~~~~ 112 (957)
T KOG1895|consen 95 FLHMEKNDLAESLWTAFH 112 (957)
T ss_pred HHhcchhHHHHHHHHHHH
Confidence 988888777666655554
No 52
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=69.75 E-value=65 Score=31.54 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhh---hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHH
Q 025778 59 ESLVRKSLIETIEDIGLKAMEHS---SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (248)
Q Consensus 59 ~~~vrk~~~~fiee~~~~~~e~~---~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~ 135 (248)
+..+|.+.=+-|..++++.+.+. ..++..|..-|+++++.|. .+|+-+-+---.+| ... .+ ..
T Consensus 387 ~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr-~sIqeALssl~~af-----~~~-----~~---~~ 452 (501)
T PF13001_consen 387 DIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVR-VSIQEALSSLAPAF-----KDL-----PD---DE 452 (501)
T ss_pred cHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHH-HHHHHHHHHHHHHH-----hcc-----cc---ch
Confidence 55899999999999999988776 4455555555766666553 33433332222233 111 00 00
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHH
Q 025778 136 WTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (248)
Q Consensus 136 W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (248)
=.........++....++....+|.+|+||+.++
T Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 453 DEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 0011112222222122455578999999999876
No 53
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.57 E-value=11 Score=39.07 Aligned_cols=73 Identities=18% Similarity=0.345 Sum_probs=51.8
Q ss_pred hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcc
Q 025778 78 MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (248)
Q Consensus 78 ~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~G 157 (248)
+|++..+.+-+-.++...+|.|-|+|++|+.-+.|.+=+++- .+ ..+++..++ ..+.|
T Consensus 137 ~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-~f----------------~~~~~~lL~-----ek~hG 194 (866)
T KOG1062|consen 137 PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-HF----------------VIAFRKLLC-----EKHHG 194 (866)
T ss_pred HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-Hh----------------hHHHHHHHh-----hcCCc
Confidence 788899999999999999999999999998766665544331 11 123333333 35678
Q ss_pred hHHHHHHHHhHHHhh
Q 025778 158 TKLLALKFLETHVLL 172 (248)
Q Consensus 158 vr~~aiKF~e~vIl~ 172 (248)
|-+..++++...+-.
T Consensus 195 VL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 195 VLIAGLHLITELCKI 209 (866)
T ss_pred eeeeHHHHHHHHHhc
Confidence 888888887776654
No 54
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.45 E-value=1.4e+02 Score=30.43 Aligned_cols=143 Identities=14% Similarity=0.063 Sum_probs=85.1
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCC-CchHHhhhHHHHhccCCc--hhHHHHHHHHHHHHHhhhhhhh
Q 025778 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSAD-PSLAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKAMEH 80 (248)
Q Consensus 4 s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~-p~ll~~~l~~il~~~~~~--~~~vrk~~~~fiee~~~~~~e~ 80 (248)
++.+.+...+|.++.. .+-.-..++.+.++.-... ..-+.-.+..+|..--.+ ...+-+|++-|++.-...+||-
T Consensus 8 ~~~~s~~~if~k~Q~s--~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg 85 (885)
T COG5218 8 SSLESMQLIFNKIQQS--SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG 85 (885)
T ss_pred HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh
Confidence 5667888899999876 3346677888888773221 112234455556653333 4588899999999777777775
Q ss_pred hhhHHHHHHHhhc---cCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcc
Q 025778 81 SSILMPVLLAFLR---DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (248)
Q Consensus 81 ~~~~l~~L~~lL~---d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~G 157 (248)
.--+-+++..+|+ ..|..|-||+.|..+-+--.+ .+-++.+. +.++..+....+|. -..
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v--------------~eIDe~l~---N~L~ekl~~R~~DR-E~~ 147 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV--------------REIDEVLA---NGLLEKLSERLFDR-EKA 147 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc--------------chHHHHHH---HHHHHHHHHHHhcc-hHH
Confidence 4444455555555 567899999887654332211 11233333 34555666533333 235
Q ss_pred hHHHHHHHH
Q 025778 158 TKLLALKFL 166 (248)
Q Consensus 158 vr~~aiKF~ 166 (248)
||..|+|.+
T Consensus 148 VR~eAv~~L 156 (885)
T COG5218 148 VRREAVKVL 156 (885)
T ss_pred HHHHHHHHH
Confidence 666666654
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=67.62 E-value=1.7e+02 Score=30.87 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=16.6
Q ss_pred hhhHHHHhccCCchhHHHHHHHHHHHHH
Q 025778 46 ELFPYLVELQSSPESLVRKSLIETIEDI 73 (248)
Q Consensus 46 ~~l~~il~~~~~~~~~vrk~~~~fiee~ 73 (248)
+.+|.+.+.-.|++..||.-.++.+.++
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3444444444566777777766666655
No 56
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=65.64 E-value=37 Score=25.07 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=46.9
Q ss_pred HhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhhhhhh----hhHHHHHHHhhccCChHHHHHHHHhhh
Q 025778 45 AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHS----SILMPVLLAFLRDGDSGVAGKSIVCGT 108 (248)
Q Consensus 45 ~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~~e~~----~~~l~~L~~lL~d~~~~V~K~aI~~~t 108 (248)
..||.....+ ...++.++|..+.+-+..+....-+.+ ..++..+..-..|++..+++.|.++..
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4455555444 567889999999998888876655544 666777777777888889988887764
No 57
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.33 E-value=17 Score=37.23 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=89.1
Q ss_pred HHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh--hhHHHHHHHhhccCChHHHHHHHHhhhh
Q 025778 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--SILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (248)
Q Consensus 32 ~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~ 109 (248)
.|.+..-..+.+...+...++....|.++.+||-++--++....-++++. .-.++.|..++.|+||.|+-.|..+...
T Consensus 107 lrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 107 LRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred hhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 44444444666777788888888888999999999888887777665544 7889999999999999998887766544
Q ss_pred hh-------------HHHHHHHhhHhhhcCCccchHHHHHHHHHHHHH-------------HHHHH---hccCCCcchHH
Q 025778 110 FF-------------CRVLEEITMQFRWHGKVERWLEELWTWMVRFKD-------------AVFAI---ALEPGLVGTKL 160 (248)
Q Consensus 110 lY-------------~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~-------------~Il~~---~~d~~n~Gvr~ 160 (248)
|- +.+. +.+- .-.--..|....-++. +|+.. .+.+.|.+|=+
T Consensus 187 I~e~~~~~~~~~l~~~~~~-----~lL~----al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvl 257 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLIN-----KLLE----ALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVL 257 (734)
T ss_pred HHHhCCCCCcccccHHHHH-----HHHH----HHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEe
Confidence 32 2222 1110 0122456766665554 23331 44789999999
Q ss_pred HHHHHHhHHHhhc
Q 025778 161 LALKFLETHVLLF 173 (248)
Q Consensus 161 ~aiKF~e~vIl~q 173 (248)
.++|++=..+-..
T Consensus 258 savKv~l~~~~~~ 270 (734)
T KOG1061|consen 258 SAVKVILQLVKYL 270 (734)
T ss_pred ehHHHHHHHHHHH
Confidence 9999875544433
No 58
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.37 E-value=95 Score=34.74 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=73.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCchH--HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCC
Q 025778 19 HGDLAVKLSSLKQVRGILSSADPSLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (248)
Q Consensus 19 ~~d~~~k~~~L~q~relll~~~p~ll--~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~ 96 (248)
.+-.+-+...|+-+-.++ +.||..+ +.....|-.=-.|.+.-||.-+.+++......+++...+.-+.+..-..|..
T Consensus 827 e~~ialRtkAlKclS~iv-e~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtg 905 (1692)
T KOG1020|consen 827 ENAIALRTKALKCLSMIV-EADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTG 905 (1692)
T ss_pred CchHHHHHHHHHHHHHHH-hcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCc
Confidence 344456667777777777 5899876 4555555444467888999999999998889999999999999999999999
Q ss_pred hHHHHHHHHhhhhhhH
Q 025778 97 SGVAGKSIVCGTNFFC 112 (248)
Q Consensus 97 ~~V~K~aI~~~t~lY~ 112 (248)
..|-||||...--+|-
T Consensus 906 vsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 906 VSVRKRVIKILRDICE 921 (1692)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999987665553
No 59
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=61.88 E-value=74 Score=29.33 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=64.5
Q ss_pred HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHh---hccCChHHHHHHHHhhhhhhHHHHHHHhh
Q 025778 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAM-EHSSILMPVLLAF---LRDGDSGVAGKSIVCGTNFFCRVLEEITM 120 (248)
Q Consensus 45 ~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~-e~~~~~l~~L~~l---L~d~~~~V~K~aI~~~t~lY~~~l~~~a~ 120 (248)
+-+.|++++|-+..+..||-.+.+++|+-..+-. .+.+-.-+-+..+ |+|++..+..+++...-.++-.+=
T Consensus 96 ~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~----- 170 (307)
T PF04118_consen 96 PIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG----- 170 (307)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC-----
Confidence 5677888888778889999999999998765332 3323333333333 667888888887776555543211
Q ss_pred HhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHH
Q 025778 121 QFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (248)
Q Consensus 121 ~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (248)
. +---...|..+ -.+..+|..|++|+.+-.
T Consensus 171 -----~--~~F~~~lwl~i-------------i~sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 171 -----D--KYFWQCLWLCI-------------ITSPSRRLGALNYLLRRL 200 (307)
T ss_pred -----h--hHHHHHHHHHH-------------hcCcchhHHHHHHHHHhC
Confidence 0 00113344332 267899999999996654
No 60
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.34 E-value=1.3e+02 Score=28.72 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=76.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH----HhhhHHHHhccCCchhHHHHHHHHHHHHHh----hhhh-hh
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA----AELFPYLVELQSSPESLVRKSLIETIEDIG----LKAM-EH 80 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll----~~~l~~il~~~~~~~~~vrk~~~~fiee~~----~~~~-e~ 80 (248)
-+||.+-+- .++..+-+.|...++++.+ +|+-+ .++++.+.+...|.+..||.-...+++.+. ..+. -+
T Consensus 61 keLl~qlkH-hNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 61 KELLSQLKH-HNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHhhhcC-chHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 456666554 4455788999999999975 88754 478888889999999999999888888643 2221 12
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHH
Q 025778 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFA 148 (248)
Q Consensus 81 ~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~ 148 (248)
++-.++.+..-+..-.|.|.- .++--+..+++ +. .+......|.++..+++.|=.
T Consensus 139 ~~l~~~yi~~AMThit~~i~~---dslkfL~~Ll~-----~~-----~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQE---DSLKFLSLLLE-----RY-----PDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHH---hhHHHHHHHHH-----Hc-----ChHHHHHHHHHHHHHHHHHHH
Confidence 344445555545554554432 22222222222 21 133456677777777766654
No 61
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.93 E-value=2.4e+02 Score=30.59 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.9
Q ss_pred cCCCcchHHHHHHHHhHHHhhcc
Q 025778 152 EPGLVGTKLLALKFLETHVLLFT 174 (248)
Q Consensus 152 d~~n~Gvr~~aiKF~e~vIl~qt 174 (248)
|++.. ||+.+++-+-.++....
T Consensus 170 d~s~~-vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 170 DPSSP-VRVAAVRALGAFAEYLE 191 (1075)
T ss_pred CCcch-HHHHHHHHHHHHHHHhc
Confidence 44444 99999999988887754
No 62
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=57.45 E-value=70 Score=27.17 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=47.7
Q ss_pred hHHhhhHHHHhc-cCCchhHHHHHHHHHHHHHhh--------h----hhhhhhhHHHHHHHhhccCCh-HHHHHHHHhhh
Q 025778 43 LAAELFPYLVEL-QSSPESLVRKSLIETIEDIGL--------K----AMEHSSILMPVLLAFLRDGDS-GVAGKSIVCGT 108 (248)
Q Consensus 43 ll~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~--------~----~~e~~~~~l~~L~~lL~d~~~-~V~K~aI~~~t 108 (248)
++++++|++... .+..+.++..|+..|-...|. . -.++++.++.++..+++-+.. ..++|+..-+-
T Consensus 81 ~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e 160 (174)
T PF04510_consen 81 FMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFE 160 (174)
T ss_pred HHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 445666666543 344457999999988776662 1 157789999999999887765 77777665554
Q ss_pred hhhH
Q 025778 109 NFFC 112 (248)
Q Consensus 109 ~lY~ 112 (248)
++.+
T Consensus 161 ~~v~ 164 (174)
T PF04510_consen 161 SFVS 164 (174)
T ss_pred HHHH
Confidence 4443
No 63
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.02 E-value=93 Score=34.26 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=80.7
Q ss_pred HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhh
Q 025778 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRW 124 (248)
Q Consensus 45 ~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~ 124 (248)
.+|+-.-+-.....-..++...-+.|-+.-.-.++++..++|.|..=|-.++..+-|.|+-..+-+|..-- .|+.
T Consensus 221 ~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-----~~l~ 295 (1266)
T KOG1525|consen 221 ANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-----SQLS 295 (1266)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-----hhhc
Confidence 45555444322223445666677777777777799999999999888888899999999998888887655 4442
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhh
Q 025778 125 HGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 125 ~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (248)
....++|..+.. .+-.....||+.|+++.....+.
T Consensus 296 -----~~~~~~~~~fl~--------r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 296 -----ETYDDLWSAFLG--------RFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred -----ccchHHHHHHHH--------HhccCChhhhhhHHHHhHHHHhc
Confidence 345788987654 55678889999999999877666
No 64
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.13 E-value=24 Score=36.95 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHH-HHHHHHhcCCCchHHhh----hHHHHhc-cCCchhHHHHHHHHHHHHH-hhhhhhh
Q 025778 8 QALSLLAAANNHGDLAVKLSSLK-QVRGILSSADPSLAAEL----FPYLVEL-QSSPESLVRKSLIETIEDI-GLKAMEH 80 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~-q~relll~~~p~ll~~~----l~~il~~-~~~~~~~vrk~~~~fiee~-~~~~~e~ 80 (248)
|+++-+|+---.+. .+-+.|+ .+|+-++.++|++++.| ||-+++. .+..++.||.-+..-|..+ +..+.|+
T Consensus 514 ri~~q~~~~~~t~~--~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~sel 591 (1051)
T KOG0168|consen 514 RIIEQINEDTGTSR--KQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSEL 591 (1051)
T ss_pred hhhhhhccCcccch--hhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHH
Q ss_pred hhhHHHH------HHHhhccCChHHHHHHHHhhhhhhHHH
Q 025778 81 SSILMPV------LLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (248)
Q Consensus 81 ~~~~l~~------L~~lL~d~~~~V~K~aI~~~t~lY~~~ 114 (248)
+..++.+ +..+|..+|+.|+=-+.|-+--|.+..
T Consensus 592 i~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl 631 (1051)
T KOG0168|consen 592 IGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL 631 (1051)
T ss_pred HHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh
No 65
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.87 E-value=2e+02 Score=32.38 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=78.6
Q ss_pred hHHhhhHHHHhcc-CCchhHHHHHHHHHHHHHhhhhhh----hhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHH
Q 025778 43 LAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAME----HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (248)
Q Consensus 43 ll~~~l~~il~~~-~~~~~~vrk~~~~fiee~~~~~~e----~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~ 117 (248)
.++.+||-+++-+ .+.-.+||||.++.+-+..+.... +.++.++.|...+..-.|.|+-....-+.++=-.++|-
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHH
Confidence 4566666555432 233459999999998888776643 44777777777766666777665555555555556544
Q ss_pred HhhHhhhcCCccchHHHHHHHHHHHHH------------HHHHHhccCCCcchHHHHHHHHhHHHhh
Q 025778 118 ITMQFRWHGKVERWLEELWTWMVRFKD------------AVFAIALEPGLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~W~~m~~lK~------------~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (248)
. |--+ .+ ....|+++..+-. +++..+..+.+.|.|+.|.-|+-.+++=
T Consensus 1207 ~--R~s~-ak----sspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1207 L--RASA-AK----SSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred H--HHhh-hc----CCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence 4 1111 11 2466776665544 4555455688999999999999655554
No 66
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=54.61 E-value=18 Score=21.65 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 84 LMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 84 ~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+++.|..++..+++.+++.++.+..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 567778888888888888888777664
No 67
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=53.87 E-value=1.7e+02 Score=26.33 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=46.9
Q ss_pred hHHhhhHHHH-hccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhh
Q 025778 43 LAAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (248)
Q Consensus 43 ll~~~l~~il-~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~ 107 (248)
.+.+++++++ +--...+.++|++...-+.-.|.-+.+...+.++.+...+..+++.|.-.++++.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3446677666 2223455699999999999999988898888888888888655666655554443
No 68
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=53.77 E-value=21 Score=29.95 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=41.8
Q ss_pred CCCchHHhhhHHHHhccCCchhHHHHHHHH-HHHHHhhhhhhhhhhHHHHHHHhhccC------ChHHHHH-HHHhhhhh
Q 025778 39 ADPSLAAELFPYLVELQSSPESLVRKSLIE-TIEDIGLKAMEHSSILMPVLLAFLRDG------DSGVAGK-SIVCGTNF 110 (248)
Q Consensus 39 ~~p~ll~~~l~~il~~~~~~~~~vrk~~~~-fiee~~~~~~e~~~~~l~~L~~lL~d~------~~~V~K~-aI~~~t~l 110 (248)
-|++..|++++.+|+ +|.-++. ||..+++.+++.+..++..+..+=.+. |-.+.++ +..++..+
T Consensus 18 ld~~~~p~li~~LLs--------aRt~is~iyir~Avk~np~~~~~~l~~~~~l~d~aeafa~fDy~l~~~la~~S~Npi 89 (164)
T PF07840_consen 18 LDHDSPPELIDNLLS--------ARTNISPIYIRYAVKNNPEKVLEILAELDKLEDDAEAFAEFDYQLFRRLAFASGNPI 89 (164)
T ss_dssp HTCTTHHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHHHHHHHHCCTTS-SSHHHHHHHHHHHHHHHHHHTS-HH
T ss_pred hCccccHHHHHHHHH--------HHHHHHHHHHHHHHHHCHHHHHHHHHHhhhcccCHHHHHHHhHHHHHHHHHhcCCCc
Confidence 456666777777766 6666654 888999999987766555444332221 2234444 44455589
Q ss_pred hHHHH
Q 025778 111 FCRVL 115 (248)
Q Consensus 111 Y~~~l 115 (248)
|+++|
T Consensus 90 Y~Lil 94 (164)
T PF07840_consen 90 YGLIL 94 (164)
T ss_dssp HHHHH
T ss_pred hhhHH
Confidence 99888
No 69
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=52.99 E-value=87 Score=29.56 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHHHhcC-CCc-hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh
Q 025778 21 DLAVKLSSLKQVRGILSSA-DPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (248)
Q Consensus 21 d~~~k~~~L~q~relll~~-~p~-ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~ 81 (248)
...||...|+=+|.++--+ .|. +-..++..+++++.+++..+|.-+.+.+.|++..+|+++
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv 143 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELV 143 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH
Confidence 3459999999999999653 453 457788888888888888999999999999998887764
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.88 E-value=1.2e+02 Score=31.86 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=31.1
Q ss_pred CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHH
Q 025778 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVA 100 (248)
Q Consensus 40 ~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~ 100 (248)
.|++.+.+.|+|-++-..++.-|||-.+--...+-++.|++....+..-..+|.+.+++|.
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL 196 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVL 196 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCcee
Confidence 3555566666665553335555665554333333344455555555555555555555443
No 71
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.58 E-value=1e+02 Score=31.66 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=92.5
Q ss_pred CchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHH-HHHHhhHhhhcCCccchHHHH
Q 025778 57 SPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV-LEEITMQFRWHGKVERWLEEL 135 (248)
Q Consensus 57 ~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~-l~~~a~~~~~~~~~~~~~~~~ 135 (248)
|.-.|||+--+.=+.....+.|.+..++++-|..+++||...|--++|-+.+.|-... +++-- .+.-.+.+
T Consensus 384 DEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeq--------l~~il~~L 455 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQ--------LRQILESL 455 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHH--------HHHHHHHH
Confidence 3445899988777776667789999999999999999999999888998888665431 10000 01112444
Q ss_pred HHHHHHHHHHHHHHhcc----CCCcchHHHHHHHHhHHHhhccCCCCCcccccccCCccc--ccccccCCCCCCCChhhH
Q 025778 136 WTWMVRFKDAVFAIALE----PGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQT--FNISWLSGGHPFLDPVSL 209 (248)
Q Consensus 136 W~~m~~lK~~Il~~~~d----~~n~Gvr~~aiKF~e~vIl~qt~~~~d~~~~~~~~~~~d--~sl~~vP~~Hp~l~~~~L 209 (248)
=+.+..++..+.. ++- ++-+++-+|..+.+..+ +.-|.| +++ -.+..+-.|||.+ +
T Consensus 456 ~D~s~dvRe~l~e-lL~~~~~~d~~~i~m~v~~lL~~L----~kyPqD---------rd~i~~cm~~iGqnH~~l----v 517 (823)
T KOG2259|consen 456 EDRSVDVREALRE-LLKNARVSDLECIDMCVAHLLKNL----GKYPQD---------RDEILRCMGRIGQNHRRL----V 517 (823)
T ss_pred HhcCHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHh----hhCCCC---------cHHHHHHHHHHhccChhh----H
Confidence 4555666666665 332 34456666666554322 222222 122 2345667888844 6
Q ss_pred HHHHHHHHHHHHHHhhhccCCC
Q 025778 210 TSEANRMLGTLMDLLQSACNLP 231 (248)
Q Consensus 210 e~Ea~~lL~~LL~~l~~~ss~~ 231 (248)
.+-+.++++....+-...++.+
T Consensus 518 ~s~m~rfl~kh~~f~t~e~s~e 539 (823)
T KOG2259|consen 518 LSNMGRFLEKHTSFATIEPSLE 539 (823)
T ss_pred HHHHHHHHHhcccccccCcccc
Confidence 6667777877777776433333
No 72
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=51.90 E-value=98 Score=23.08 Aligned_cols=59 Identities=17% Similarity=0.029 Sum_probs=47.2
Q ss_pred CchhHHHHHHHHHHHHHhhhh----hhhhhhHHHHHHHhhccCC--hHHHHHHHHhhhhhhHHHH
Q 025778 57 SPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGD--SGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 57 ~~~~~vrk~~~~fiee~~~~~----~e~~~~~l~~L~~lL~d~~--~~V~K~aI~~~t~lY~~~l 115 (248)
+.+-++|.+-++++..+|++. +.+-+++..++...+.|++ ..+.=.||.+...+=+.+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~v 81 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAV 81 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456699999999999999754 6778999999999988764 4566677888777766666
No 73
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=49.88 E-value=60 Score=34.88 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=65.1
Q ss_pred HHHHhcCCCchHHhhhHHHH-hccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 33 RGILSSADPSLAAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 33 relll~~~p~ll~~~l~~il-~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
-++.+ .|-.|+.-++|.+. +++......+|.-++=.+.++|..++-+.-..+|.+.+-|.|.++.|-|+.|--.+.+.
T Consensus 956 akmcL-ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLL 1034 (1529)
T KOG0413|consen 956 AKMCL-AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLL 1034 (1529)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34444 45557777888665 77778888999999999999999999999999999999999999999999887777665
Q ss_pred H
Q 025778 112 C 112 (248)
Q Consensus 112 ~ 112 (248)
.
T Consensus 1035 q 1035 (1529)
T KOG0413|consen 1035 Q 1035 (1529)
T ss_pred h
Confidence 4
No 74
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=49.62 E-value=1.3e+02 Score=32.32 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=76.6
Q ss_pred hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-----hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHH
Q 025778 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (248)
Q Consensus 43 ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-----~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~ 117 (248)
.+.+++|++..|---..-.+|--...++++..+.. .+.+-.++..+..|+.+.|-.|...++.+.+.+...-
T Consensus 648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~--- 724 (1233)
T KOG1824|consen 648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ--- 724 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc---
Confidence 44677777777654444456666666666665433 4566777777888888888888888887776554311
Q ss_pred HhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccC-CCcchHHHHHHHHhHHHhhccCC
Q 025778 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEP-GLVGTKLLALKFLETHVLLFTSD 176 (248)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~-~n~Gvr~~aiKF~e~vIl~qt~~ 176 (248)
....-..++.+-+.|+.++..+ -..|.--++.+|.+..|....++
T Consensus 725 --------------ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~ 770 (1233)
T KOG1824|consen 725 --------------PSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPD 770 (1233)
T ss_pred --------------cHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCC
Confidence 1233445556777777733222 23577888999999988887755
No 75
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=48.77 E-value=1.5e+02 Score=24.33 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=77.1
Q ss_pred CchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-hhh----hhhHHHHHHHhhcc-CChHHHHHHHHhhhhhhHHH
Q 025778 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEH----SSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRV 114 (248)
Q Consensus 41 p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-~e~----~~~~l~~L~~lL~d-~~~~V~K~aI~~~t~lY~~~ 114 (248)
.+.++.+...+..+-.+++.+-|=-++.++..+|... .|. ...-+..|...|+. +++.+.+.+|.+.+.+|..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4466788888888877777777777777887777653 333 34445555555665 45678899999999999755
Q ss_pred HHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhcc
Q 025778 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (248)
Q Consensus 115 l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qt 174 (248)
- ++- +-.-|..=..+..+-...++ +.++ ..+...|+..+..++..+.
T Consensus 100 ~-----~~p-----~l~Rei~tp~l~~~i~~ll~-l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 100 R-----GKP-----TLTREIATPNLPKFIQSLLQ-LLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred c-----CCC-----chHHHHhhccHHHHHHHHHH-HHhc--cccHHHHHHHHHHHHHHCC
Confidence 5 221 10112222334555555555 3333 6777788888888887765
No 76
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.52 E-value=1.8e+02 Score=29.47 Aligned_cols=104 Identities=10% Similarity=0.125 Sum_probs=68.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh-hhhhHH
Q 025778 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-HSSILM 85 (248)
Q Consensus 11 ~lln~A~~~~d~~~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e-~~~~~l 85 (248)
+-|..=........|+..|+=...+. ++.|. ..+++++.+|..-+|++.+|=-...+.+.++|..... +..+.+
T Consensus 339 ~vl~~~l~~~~~~tri~~L~Wi~~l~-~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl 417 (675)
T KOG0212|consen 339 EVLTKYLSDDREETRIAVLNWIILLY-HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFL 417 (675)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH-hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 33333334455668899999988777 68886 3488999898777899999988899999999975533 344455
Q ss_pred HHHHHhhccCC-------hHHHHHHH--HhhhhhhHHHH
Q 025778 86 PVLLAFLRDGD-------SGVAGKSI--VCGTNFFCRVL 115 (248)
Q Consensus 86 ~~L~~lL~d~~-------~~V~K~aI--~~~t~lY~~~l 115 (248)
-.|..+...+. +-++|+.- .-+..+|+..-
T Consensus 418 ~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 418 LSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 55555544433 33344322 23446777654
No 77
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=48.44 E-value=81 Score=23.15 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHH
Q 025778 22 LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (248)
Q Consensus 22 ~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee 72 (248)
..+.+..|++|.+++.. .+..+.+.+.++.+-.. .++++ +.+++||++
T Consensus 29 s~~~i~~l~~ayr~l~~-~~~~~~~a~~~l~~~~~-~~~~v-~~~~~Fi~~ 76 (83)
T PF13720_consen 29 SKEEISALRRAYRILFR-SGLTLEEALEELEEEYP-DSPEV-REIVDFIRN 76 (83)
T ss_dssp -HHHHHHHHHHHHHHHT-SSS-HHHHHHHHHHHTT-SCHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhcc-CCHHH-HHHHHHHHh
Confidence 45799999999999985 55677888888876222 24444 556688873
No 78
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.23 E-value=2.9e+02 Score=27.45 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=75.7
Q ss_pred CchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh----hhhhhhhhHHHH-HHHhhccCChHHHHHHHHhhhhhhHHHH
Q 025778 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----KAMEHSSILMPV-LLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 41 p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~----~~~e~~~~~l~~-L~~lL~d~~~~V~K~aI~~~t~lY~~~l 115 (248)
..++.+++-.+.+=+.|++.-+|.-++.-|.-... +-..+-...++. +..|..+.+..|+=.++.|.+-+-+.+-
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 34778888888888899999888887765553322 113344444444 4455556677888888888776655433
Q ss_pred HHHhhHhhhcCCccchHHHHHHHHHHHH---HHHHHHhccCCCcchHHHHHHHHhHHHhhccCC
Q 025778 116 EEITMQFRWHGKVERWLEELWTWMVRFK---DAVFAIALEPGLVGTKLLALKFLETHVLLFTSD 176 (248)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~W~~m~~lK---~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qt~~ 176 (248)
.|+-+.-++ .++.. +|+++++-.|++++-..+..-.+-+++
T Consensus 333 -------------------~~~l~~~~l~ialrlR~-l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 333 -------------------NDDLESYLLNIALRLRT-LFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred -------------------hcchhhhchhHHHHHHH-HHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 233333444 45555 889999999999997776665554433
No 79
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.64 E-value=1.5e+02 Score=27.95 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=63.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCc--hH-HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh-----hhHHHHHHH
Q 025778 19 HGDLAVKLSSLKQVRGILSSADPS--LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLA 90 (248)
Q Consensus 19 ~~d~~~k~~~L~q~relll~~~p~--ll-~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~-----~~~l~~L~~ 90 (248)
+.|..+|.+.|-..++++.+=|-. |. -++++.++.+-.+.+.+||..-+..|..+...+|.-- ...+..|..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 378889999999999999643332 22 3455556666668889999999999998887554222 335566777
Q ss_pred hhccCChHHH-HHHHHhhhhhhH
Q 025778 91 FLRDGDSGVA-GKSIVCGTNFFC 112 (248)
Q Consensus 91 lL~d~~~~V~-K~aI~~~t~lY~ 112 (248)
.|.-+++.-+ ++|.-+.+++.|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHh
Confidence 7775555544 555555555554
No 80
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.11 E-value=87 Score=32.31 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCch---HHhhhHHHHhccCCchhHHHHHHHH---HHHHHhh-hhhhhhhhHHHHHHHhhccCCh
Q 025778 25 KLSSLKQVRGILSSADPSL---AAELFPYLVELQSSPESLVRKSLIE---TIEDIGL-KAMEHSSILMPVLLAFLRDGDS 97 (248)
Q Consensus 25 k~~~L~q~relll~~~p~l---l~~~l~~il~~~~~~~~~vrk~~~~---fiee~~~-~~~e~~~~~l~~L~~lL~d~~~ 97 (248)
+-+.++-+-..++...-++ +|.|+..+..++.|.+++|||.+.. |+-|+-- +-.-++..+++.......|.|.
T Consensus 191 Rs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE 270 (885)
T KOG2023|consen 191 RSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDE 270 (885)
T ss_pred HHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcch
Confidence 4445555555555444443 3899999999999999999999875 3333321 2244567777777777778888
Q ss_pred HHHHH
Q 025778 98 GVAGK 102 (248)
Q Consensus 98 ~V~K~ 102 (248)
.|.=.
T Consensus 271 ~VALE 275 (885)
T KOG2023|consen 271 NVALE 275 (885)
T ss_pred hHHHH
Confidence 76533
No 81
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=47.00 E-value=85 Score=23.87 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHhhccC-ChHHHHHHHHhhhhhhHHHH
Q 025778 64 KSLIETIEDIGLKAMEHSSILMPVLLAFLRDG-DSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 64 k~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~-~~~V~K~aI~~~t~lY~~~l 115 (248)
..++.+...+ ..+||--...+..|..+..+. +..|.|-|+.+...+|+-++
T Consensus 6 ~~IA~l~~~i-le~PE~ni~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIi 57 (95)
T PF07540_consen 6 EEIASLASSI-LEDPEENIGSLKRLLKLCESKVDVTVRKLAILSLLAVFKDII 57 (95)
T ss_pred HHHHHHHHHH-HHCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcC
Confidence 3344433333 246776677788888888888 89999999999999998776
No 82
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=46.26 E-value=2.1e+02 Score=25.24 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh-hh----hhHHHHHHHhhcc
Q 025778 20 GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-HS----SILMPVLLAFLRD 94 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e-~~----~~~l~~L~~lL~d 94 (248)
.+++.+++.|+..-..|+++-..-...++|.++.. =+....|.++..++.+-.+++.. +- ..++.-+...|.|
T Consensus 18 ~~s~rrlevlr~ci~~if~~k~~e~~k~~~av~~~--lk~~~aR~~~~~~L~~~~~~~k~~L~~~qF~~lv~lin~aLq~ 95 (225)
T PF12335_consen 18 ANSARRLEVLRNCISFIFDNKILEARKSLPAVLRA--LKSRSARQAFCRELSKHVKSNKAVLDDQQFDYLVRLINCALQD 95 (225)
T ss_pred hhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHH
Confidence 46678999999999999988777778889988753 34556899999999987766544 22 2333333444444
Q ss_pred ----CChHHHHHHHHhhhhhhHH
Q 025778 95 ----GDSGVAGKSIVCGTNFFCR 113 (248)
Q Consensus 95 ----~~~~V~K~aI~~~t~lY~~ 113 (248)
+|-.+++...-..+.+||.
T Consensus 96 ~s~~dd~~~Aa~LL~ls~~fyrk 118 (225)
T PF12335_consen 96 CSESDDYGIAAALLPLSTAFYRK 118 (225)
T ss_pred HHhccchHHHHHHHHHHHHHHHH
Confidence 3567888888888888986
No 83
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=45.02 E-value=1.2e+02 Score=28.10 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCCc-----hHHhhhHHHHhcc----------CCchhHHHHHHHHHHHHHhhh----hhhhhhhH
Q 025778 24 VKLSSLKQVRGILSSADPS-----LAAELFPYLVELQ----------SSPESLVRKSLIETIEDIGLK----AMEHSSIL 84 (248)
Q Consensus 24 ~k~~~L~q~relll~~~p~-----ll~~~l~~il~~~----------~~~~~~vrk~~~~fiee~~~~----~~e~~~~~ 84 (248)
.++..|-++-+-++ .+|. ++-+++|.++..- .+.+-.+|.+-+.++..+|++ ++.+.+++
T Consensus 232 ~~L~~lm~~v~ALl-~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri 310 (343)
T cd08050 232 ALLIYLMRMVRALL-DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI 310 (343)
T ss_pred HHHHHHHHHHHHHh-cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 44444444444443 3443 4567888887442 123459999999999999975 46788999
Q ss_pred HHHHHHhhccCC
Q 025778 85 MPVLLAFLRDGD 96 (248)
Q Consensus 85 l~~L~~lL~d~~ 96 (248)
..++..-+-|++
T Consensus 311 ~~tl~k~l~d~~ 322 (343)
T cd08050 311 TRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHHcCCC
Confidence 988887777664
No 84
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=44.67 E-value=1.6e+02 Score=23.41 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=47.1
Q ss_pred hhhhhhhhHHHHHHHhhc-cCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCC
Q 025778 76 KAMEHSSILMPVLLAFLR-DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPG 154 (248)
Q Consensus 76 ~~~e~~~~~l~~L~~lL~-d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~ 154 (248)
+-.+.-.+++..|..+|. ..||.++- | ++-.|...+ ++. +......+. ...|.+|.. +..+.
T Consensus 36 kf~~~~~~llk~L~~lL~~s~d~~~la--V-ac~Dig~~v------r~~------p~gr~ii~~-lg~K~~vM~-Lm~h~ 98 (119)
T PF11698_consen 36 KFEENNFELLKKLIKLLDKSDDPTTLA--V-ACHDIGEFV------RHY------PNGRNIIEK-LGAKERVME-LMNHE 98 (119)
T ss_dssp GGSSGGGHHHHHHHHHH-SHHHHHHHH--H-HHHHHHHHH------HH-------GGGHHHHHH-HSHHHHHHH-HTS-S
T ss_pred HHHHcccHHHHHHHHHHccCCCcceee--h-hhcchHHHH------HHC------hhHHHHHHh-cChHHHHHH-HhcCC
Confidence 335555677777777874 33554432 1 222222222 111 112344433 358999999 77999
Q ss_pred CcchHHHHHHHHhHHHh
Q 025778 155 LVGTKLLALKFLETHVL 171 (248)
Q Consensus 155 n~Gvr~~aiKF~e~vIl 171 (248)
|.-||-.|++-+|+++.
T Consensus 99 d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 99 DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.07 E-value=4.2e+02 Score=28.08 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=86.9
Q ss_pred chhHHHHHHHHHHHHHhhhhh-h------hhhhHHHHHHHhhcc------------------CChHHHHHHHHhhhhhhH
Q 025778 58 PESLVRKSLIETIEDIGLKAM-E------HSSILMPVLLAFLRD------------------GDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 58 ~~~~vrk~~~~fiee~~~~~~-e------~~~~~l~~L~~lL~d------------------~~~~V~K~aI~~~t~lY~ 112 (248)
.+.-||+..+.+|..+.+..+ | -.|.-+..|..+|+| ++++|.| +.++-++|-
T Consensus 134 ~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQK--lVAFENaFe 211 (970)
T KOG0946|consen 134 FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQK--LVAFENAFE 211 (970)
T ss_pred hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHH--HHHHHHHHH
Confidence 344577777777776654221 1 124445555555555 2345554 557788888
Q ss_pred HHHHHHhhHhhhcCCccchHHHHHHHHHH-HHHHHHHH-----------------hccCCC------cchHHHHHHHHhH
Q 025778 113 RVLEEITMQFRWHGKVERWLEELWTWMVR-FKDAVFAI-----------------ALEPGL------VGTKLLALKFLET 168 (248)
Q Consensus 113 ~~l~~~a~~~~~~~~~~~~~~~~W~~m~~-lK~~Il~~-----------------~~d~~n------~Gvr~~aiKF~e~ 168 (248)
..|+.+-..|-..+.+ -.+++-.-|.. +|..+.+- ++..++ ..-|+.++-|+=.
T Consensus 212 rLfsIIeeEGg~dGgI--VveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lq 289 (970)
T KOG0946|consen 212 RLFSIIEEEGGLDGGI--VVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQ 289 (970)
T ss_pred HHHHHHHhcCCCCCcc--hHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHH
Confidence 8887775544222221 13555555443 34433220 122222 2467777766655
Q ss_pred HHhhccCCCCCcccccccCCcccccccccCCCCCCCCh-hh-HHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHh
Q 025778 169 HVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDP-VS-LTSEANRMLGTLMDLLQSACNLPGSVIITVVNCLNSLC 246 (248)
Q Consensus 169 vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~-~~-Le~Ea~~lL~~LL~~l~~~ss~~~~l~~a~lnsL~~ia 246 (248)
+|-+-. ||+.+.=.. +. =--...++++.|...+.++. ++..+....+++.+-++
T Consensus 290 ivr~lV-----------------------sP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~-vp~dIltesiitvAevV 345 (970)
T KOG0946|consen 290 IVRSLV-----------------------SPGNTSSITHQNQKALVSSHLLDVLCTILMHPG-VPADILTESIITVAEVV 345 (970)
T ss_pred HHHHhc-----------------------CCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC-CcHhHHHHHHHHHHHHH
Confidence 554433 222221111 11 11234578888888888775 56777888888888776
Q ss_pred h
Q 025778 247 R 247 (248)
Q Consensus 247 k 247 (248)
|
T Consensus 346 R 346 (970)
T KOG0946|consen 346 R 346 (970)
T ss_pred H
Confidence 6
No 86
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.76 E-value=92 Score=32.75 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=60.4
Q ss_pred HHHhccCCchhHHHHHHHHHHHHHhhhh-hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCc
Q 025778 50 YLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKV 128 (248)
Q Consensus 50 ~il~~~~~~~~~vrk~~~~fiee~~~~~-~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~ 128 (248)
.++.+-......+.+++.+-|--+++.| |+.=+..++-|..-+...|-++.+.+..++-++|+ ||..+-|
T Consensus 92 lIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFk--------r~R~efr- 162 (960)
T KOG1992|consen 92 LIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFK--------RYRPEFR- 162 (960)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH--------hcCcccc-
Confidence 3334434455678999999999999887 78888888888888889999999999999999998 7776644
Q ss_pred cchHHHHHHHH
Q 025778 129 ERWLEELWTWM 139 (248)
Q Consensus 129 ~~~~~~~W~~m 139 (248)
+ .++|.-.
T Consensus 163 --S-daL~~EI 170 (960)
T KOG1992|consen 163 --S-DALWLEI 170 (960)
T ss_pred --c-HHHHHHH
Confidence 2 4677543
No 87
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=43.23 E-value=2.6e+02 Score=28.63 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCc----hhHHHHHHHHHHHHHhhhhhhhhh
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSP----ESLVRKSLIETIEDIGLKAMEHSS 82 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~----~~~vrk~~~~fiee~~~~~~e~~~ 82 (248)
.+.++.+.+-+..++.-.++...+..-+++ ..+|.++.+|.|-+=.--.+. .-|..|-+..|-++- -.+++.-
T Consensus 226 lklv~hf~~n~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~ 302 (898)
T COG5240 226 LKLVEHFRGNASMKNQLAGVLLVRATVELL-KENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD 302 (898)
T ss_pred HHHHHHhhcccccccchhheehHHHHHHHH-HhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH
Confidence 344555555444444445666666666666 467777766666332332332 225555555544432 1245555
Q ss_pred hHHHHHHHhhccCCh
Q 025778 83 ILMPVLLAFLRDGDS 97 (248)
Q Consensus 83 ~~l~~L~~lL~d~~~ 97 (248)
.++..|..+|.....
T Consensus 303 ~~vs~L~~fL~s~rv 317 (898)
T COG5240 303 QTVSSLRTFLKSTRV 317 (898)
T ss_pred HHHHHHHHHHhcchH
Confidence 555555555554433
No 88
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.06 E-value=4.7e+02 Score=28.44 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=69.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh---hh--hh
Q 025778 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGL---KA--ME 79 (248)
Q Consensus 9 ~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~---~~--~e 79 (248)
+.+++-+...+++-.++-..|-..--+. ++.+. .+|+++|-++.+-.|+++.||--...-|..... .. ..
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~-EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIA-EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 4566667777777777766666555444 34333 558888888888889999999887776665542 11 12
Q ss_pred hhhhHHHHHHHhhccC-ChHHHHHHHHhhhhhhHHHH
Q 025778 80 HSSILMPVLLAFLRDG-DSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 80 ~~~~~l~~L~~lL~d~-~~~V~K~aI~~~t~lY~~~l 115 (248)
+-.++.+.|...+.+. ++.|...|..+.-+..-.+-
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 2345555666677654 67888888777766655444
No 89
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.78 E-value=2.4e+02 Score=28.11 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=73.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCc----hHHhhhHHHHhcc-CCchhHHHHHHHHHHHHHhhhhhh---h
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPS----LAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAME---H 80 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~-~p~----ll~~~l~~il~~~-~~~~~~vrk~~~~fiee~~~~~~e---~ 80 (248)
.+.+-++..+.|...++....+.|.++... +|- .-.+.+|.+++|- .+.++.++-..+--+.-++....| .
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 344445556677778999999999999643 343 2257788888774 466678877777777777764332 2
Q ss_pred h--hhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 81 S--SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 81 ~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
. ..+++.+..|+...+..|..+++.+.+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNI 179 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNI 179 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhcc
Confidence 2 66778889999999999999998888765
No 90
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=42.25 E-value=2.3e+02 Score=24.62 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=88.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 025778 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (248)
Q Consensus 11 ~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~ 90 (248)
.|+..+....+..-+...|+-+-++.-+++ ...+-++..+..+...+..+.+-.....+-..-+++....+..-+.|..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~ 82 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLL 82 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 345555556777789999999999998887 7777888877777767777776666666666666554332222221221
Q ss_pred h-hc-----cCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHH
Q 025778 91 F-LR-----DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALK 164 (248)
Q Consensus 91 l-L~-----d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiK 164 (248)
+ ++ -++..-....|.+++++.+.+- . ..+.|.-|...=+.+++ ++.++.++-.|+.
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~----------~-----~p~~g~~ll~~ls~~L~---~~~~~~~~alale 144 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICC----------S-----RPDHGVDLLPLLSGCLN---QSCDEVAQALALE 144 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHH----------h-----ChhhHHHHHHHHHHHHh---ccccHHHHHHHHH
Confidence 0 11 1122233444555555555443 1 23388888887777775 6788889999998
Q ss_pred HHhHHH
Q 025778 165 FLETHV 170 (248)
Q Consensus 165 F~e~vI 170 (248)
++..+-
T Consensus 145 ~l~~Lc 150 (234)
T PF12530_consen 145 ALAPLC 150 (234)
T ss_pred HHHHHH
Confidence 887654
No 91
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=40.62 E-value=2.1e+02 Score=27.19 Aligned_cols=82 Identities=17% Similarity=0.093 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-h----hhhhhHHHHHHHhhccCChHHHH
Q 025778 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-M----EHSSILMPVLLAFLRDGDSGVAG 101 (248)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-~----e~~~~~l~~L~~lL~d~~~~V~K 101 (248)
.+|...-....++||++...++.+++-.=+-.++.=.-.+.+.+++++..- + .....+...+...+..+...|+.
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAE 315 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAE 315 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 677777788888999999999999987532233333334556777776432 2 22344444455556677777877
Q ss_pred HHHHhhh
Q 025778 102 KSIVCGT 108 (248)
Q Consensus 102 ~aI~~~t 108 (248)
+|+....
T Consensus 316 rAl~~w~ 322 (409)
T PF01603_consen 316 RALYFWN 322 (409)
T ss_dssp HHHGGGG
T ss_pred HHHHHHC
Confidence 7776544
No 92
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=40.31 E-value=4.1e+02 Score=27.23 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=63.6
Q ss_pred HhcCCCchHHhhhHHHHh--c---cCCchhHHHHHHHHHHHHHhhhhhhhhhhHH--HHHHHhhccCChHHHHHHHHhhh
Q 025778 36 LSSADPSLAAELFPYLVE--L---QSSPESLVRKSLIETIEDIGLKAMEHSSILM--PVLLAFLRDGDSGVAGKSIVCGT 108 (248)
Q Consensus 36 ll~~~p~ll~~~l~~il~--~---~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l--~~L~~lL~d~~~~V~K~aI~~~t 108 (248)
+.+.+|+++..++..+.. | -.|-+.-+|--..--+..-|.-.|++..+.. ...--+|.|...+|-+.+..
T Consensus 260 l~~ln~sl~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~K--- 336 (740)
T COG5537 260 LYDLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSK--- 336 (740)
T ss_pred HHhhcchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHH---
Confidence 334578775444444321 1 2333444444333333333334455554332 22222377777777655432
Q ss_pred hhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhcc
Q 025778 109 NFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (248)
Q Consensus 109 ~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qt 174 (248)
+-+..+ .... .-...=.-+..+|++|+.+..-..+. ||+|++|-++..=.+-.
T Consensus 337 -il~~L~---------s~~p--~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~ 389 (740)
T COG5537 337 -ILLFLC---------SRIP--HTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGV 389 (740)
T ss_pred -HHHHHH---------hcCC--cchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcc
Confidence 222222 1111 11255566779999999954434444 99999999887655543
No 93
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=39.82 E-value=1e+02 Score=25.37 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 51 LVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 51 il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
+.+...+.+.-+||++..++-....+ ......+++.+..++.|++.-|-|-+--+...++
T Consensus 110 ~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~ 169 (197)
T cd06561 110 LEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYG 169 (197)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 33444566666666666555444333 2234444455555555555555444444433333
No 94
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.04 E-value=1.5e+02 Score=30.84 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCC--CchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh--hhhhhhHHHHHHHhhc-cCChHHH
Q 025778 26 LSSLKQVRGILSSAD--PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--MEHSSILMPVLLAFLR-DGDSGVA 100 (248)
Q Consensus 26 ~~~L~q~relll~~~--p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~--~e~~~~~l~~L~~lL~-d~~~~V~ 100 (248)
=..|=.+-.+++|-| |+++..-...+=+|-++++..+|-...+=+...|... .+-+.+-.+.+...|+ +.|..|.
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSir 386 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIR 386 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHH
Confidence 345666667777665 4577777776667767777777776655444333221 1222222344444444 4455555
Q ss_pred HHHHH
Q 025778 101 GKSIV 105 (248)
Q Consensus 101 K~aI~ 105 (248)
|||+.
T Consensus 387 rravD 391 (938)
T KOG1077|consen 387 RRAVD 391 (938)
T ss_pred HHHHH
Confidence 55543
No 95
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=38.48 E-value=35 Score=28.74 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhc
Q 025778 107 GTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (248)
Q Consensus 107 ~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~q 173 (248)
-..=|+.=|..++..-- .+ ..+. ....+|+.|...+.+....|||++++-|+..++=-.
T Consensus 38 I~~~Y~~d~n~mcd~i~-~~-----~~S~--~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~ 96 (167)
T PF11099_consen 38 IKNDYKRDFNSMCDIIE-AN-----DISY--NIDDIKNEVIEILLSDNRPSVKLATISLISIIIEKW 96 (167)
T ss_dssp HHHHTHHHHHHHHHHHH-CC-----CCTT---HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHh-cc-----cccc--cHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHHH
Confidence 33557777777764221 11 1111 566899999885555777999999999998886443
No 96
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=38.46 E-value=1e+02 Score=27.55 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHH
Q 025778 63 RKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF 142 (248)
Q Consensus 63 rk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~l 142 (248)
|.-+..-+.+.....+.+.+.+++.|..=|..+.+.|.+.+.++.....+. +.. ..+.++....|+. +
T Consensus 188 ~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~-y~~--------~~~~~~~~~iw~~---l 255 (262)
T PF14500_consen 188 REDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN-YGA--------DSLSPHWSTIWNA---L 255 (262)
T ss_pred HHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-CCH--------HHHHHHHHHHHHH---H
Confidence 344444556565677888999999999999999888887777776655441 100 0123456788875 4
Q ss_pred HHHHH
Q 025778 143 KDAVF 147 (248)
Q Consensus 143 K~~Il 147 (248)
|..|+
T Consensus 256 k~Eil 260 (262)
T PF14500_consen 256 KFEIL 260 (262)
T ss_pred HHHHc
Confidence 55554
No 97
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=37.78 E-value=1.5e+02 Score=31.50 Aligned_cols=98 Identities=22% Similarity=0.385 Sum_probs=68.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCch----HHhhhHHHHhccCCch---hHHHHHHHHHHHHHhhhhh--
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSL----AAELFPYLVELQSSPE---SLVRKSLIETIEDIGLKAM-- 78 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~l----l~~~l~~il~~~~~~~---~~vrk~~~~fiee~~~~~~-- 78 (248)
...-||=||..-+|...|++.|+-...++. ..+.+ ++.++|..+.+..|.+ ..||---..-++..-..-|
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~-~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLT-ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHH-hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 456788899988999999999999999986 55444 4778888888876665 5677666666665443222
Q ss_pred ---hhhhhHHHHHHHhhccCChHHHHHHHHh
Q 025778 79 ---EHSSILMPVLLAFLRDGDSGVAGKSIVC 106 (248)
Q Consensus 79 ---e~~~~~l~~L~~lL~d~~~~V~K~aI~~ 106 (248)
-+-++++..|.--|.|.--.|-|.|+.|
T Consensus 988 ~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 988 SLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2237788888888888755555555554
No 98
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=37.66 E-value=3.1e+02 Score=30.40 Aligned_cols=128 Identities=19% Similarity=0.325 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcC---CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh--hhh
Q 025778 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSA---DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KAM 78 (248)
Q Consensus 4 s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~---~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~--~~~ 78 (248)
|..|=++-||.+|..-+.-..=+..|..+.-|+... -|. +-+++..++.|--.|+.-+|+.+.+||.++.. .+.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~-v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA-VKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH-HHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 456778899999998766556677777777766433 233 34788888888778999999999999998853 345
Q ss_pred hhhhhHHHHHHHhhccCChHHHHH--HHHhhh-hhhHHHHHHHhhHhhhcCCccchHHHHHHHH
Q 025778 79 EHSSILMPVLLAFLRDGDSGVAGK--SIVCGT-NFFCRVLEEITMQFRWHGKVERWLEELWTWM 139 (248)
Q Consensus 79 e~~~~~l~~L~~lL~d~~~~V~K~--aI~~~t-~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m 139 (248)
+--.++.|.+.-+++-.-..+-|. -++|.- -+=|.+|.++. +|- +++..-|...
T Consensus 731 dvyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVsRsv~~~l~-r~~------~ens~f~k~l 787 (1431)
T KOG1240|consen 731 DVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVSRSVFNQLL-RWS------DENSSFWKKL 787 (1431)
T ss_pred hheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCcHHHHHHHH-HHh------hcchHHHHHH
Confidence 555566666666666433333333 233332 34455554444 552 2345556544
No 99
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=37.03 E-value=1.2e+02 Score=24.72 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=31.7
Q ss_pred hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhcc
Q 025778 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (248)
Q Consensus 43 ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d 94 (248)
++.+|||.- -...+++.++.++|++.+...+.-..+++..+..-+..
T Consensus 82 iL~~yLP~~-----lseeEi~~~v~~~i~e~ga~~~k~mG~vMk~l~~~~~G 128 (143)
T PF09424_consen 82 ILEEYLPKQ-----LSEEEIEAIVEEAIAELGASSMKDMGKVMKALMAKLKG 128 (143)
T ss_dssp HHGGGS----------HHHHHHHHHHHHHHTT--BGGGHHHHHHHHHHHHTT
T ss_pred HHHHhCcCC-----CCHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 456777742 33568999999999999887777778888877766553
No 100
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.79 E-value=2.6e+02 Score=26.76 Aligned_cols=51 Identities=8% Similarity=0.078 Sum_probs=23.8
Q ss_pred hHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHH
Q 025778 48 FPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (248)
Q Consensus 48 l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI 104 (248)
++.+++.-.|++..||.-+++-+.++. .+.+.+.|..+|.+++|.|..-++
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~------~~~a~~~L~~~L~~~~p~vR~aal 138 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG------GRQAEPWLEPLLAASEPPGRAIGL 138 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC------chHHHHHHHHHhcCCChHHHHHHH
Confidence 333443334555556666655555332 123334444455555555444444
No 101
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=35.99 E-value=7.9e+02 Score=28.99 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=46.0
Q ss_pred hhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh-----hhHHHHHHHhhccCChHHHHHHHHhhhhhhH
Q 025778 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 46 ~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~-----~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~ 112 (248)
+-+|.+.++...++..+|+.-+..|+.+|..+.+.. ...++.|..+|...+..+.|.+..+.+++++
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 355666666666677778877777777776444322 3456667777777777788887777777774
No 102
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=35.69 E-value=2.2e+02 Score=29.72 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=45.9
Q ss_pred hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-hhhh-hhHHHHHHHhhccCChHHHHHHHHhhh
Q 025778 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHS-SILMPVLLAFLRDGDSGVAGKSIVCGT 108 (248)
Q Consensus 43 ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-~e~~-~~~l~~L~~lL~d~~~~V~K~aI~~~t 108 (248)
+-+..+|.+.+++.|..-++|.-+.+++...+... .++. .+.-+.+..-+.|..-.+.++|..+++
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 55889999999999999999999999999877644 3444 333333444466666666666555544
No 103
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=35.41 E-value=99 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=12.7
Q ss_pred cCCchhHHHHHHHHHHHHHhhhhhhhhhh
Q 025778 55 QSSPESLVRKSLIETIEDIGLKAMEHSSI 83 (248)
Q Consensus 55 ~~~~~~~vrk~~~~fiee~~~~~~e~~~~ 83 (248)
..|++..||+-+.-+|.++++++++....
T Consensus 164 ~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 164 LKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp TTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 34444445555555555555544444333
No 104
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.14 E-value=1.1e+02 Score=27.21 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=49.3
Q ss_pred hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 43 ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+|+-|++++-+.-++-..--|.=+.|+|..-+.+-.-.+++.+..|..-|...|-.|.+++.++...+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~l 182 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQL 182 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 77889998888766655555555667777666555666788888888888888888888776655443
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=34.74 E-value=2.2e+02 Score=31.46 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh--hh--h----hhhhhHHHHHHHhh
Q 025778 22 LAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KA--M----EHSSILMPVLLAFL 92 (248)
Q Consensus 22 ~~~k~~~L~q~relll~~-~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~--~~--~----e~~~~~l~~L~~lL 92 (248)
...|++.|.=++++-..- +-..+|-++|+++-+-.|+...||-.-..-+.++.. ++ + =+.--++|.|..|+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 346899998888888654 445899999999999999999999988877776653 11 1 12345678899999
Q ss_pred ccCChHHHHHHHH
Q 025778 93 RDGDSGVAGKSIV 105 (248)
Q Consensus 93 ~d~~~~V~K~aI~ 105 (248)
.|.++..++-+..
T Consensus 517 ~d~~~~~vRiayA 529 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYA 529 (1431)
T ss_pred ccCccceehhhHH
Confidence 9977766665543
No 106
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.65 E-value=1.9e+02 Score=21.49 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~ 77 (248)
+.++-.+|.++-..+|..+=...+ +|+- -|.+.++++-.++....+.+...|+.++.++...+.++
T Consensus 2 rk~i~~~l~ey~~~~d~~ea~~~l---~el~---~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 2 RKKIFSILMEYFSSGDVDEAVECL---KELK---LPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHH---HHTT----GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHH---HHhC---CCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 346677888888778854444444 4542 33677888888887777778889999999999888654
No 107
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=34.48 E-value=4.9e+02 Score=26.10 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhcc---------
Q 025778 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD--------- 94 (248)
Q Consensus 24 ~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d--------- 94 (248)
..-..|.+-..|+ .++.|+-.|+. .||=|.+-+..-|.-+|++|--+.-.+.+++..++.+|..=|-+
T Consensus 38 ~~~~~l~~f~~LL--~nk~Fl~~fi~-tlE~q~~fs~rDr~~vASLL~vaL~~kl~Y~T~Il~~LL~~li~~~~~~k~pk 114 (539)
T PF08337_consen 38 TVEQGLRQFSQLL--NNKHFLLTFIH-TLESQRSFSMRDRCNVASLLMVALQGKLEYATDILKTLLADLIEKSVESKNPK 114 (539)
T ss_dssp HHHHHHHHHHHHH--TSHHHHHHHHH-HHHCSSSS-HHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred hHhHHHHHHHHHh--cCchHHHHHHH-HHHhCCCcccccchhhhhHHHHHHccccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3345677777777 67778878877 56778778889999999999988888888887777765543321
Q ss_pred ----CChHHHHHHH-Hhhh-hhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHH
Q 025778 95 ----GDSGVAGKSI-VCGT-NFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFA 148 (248)
Q Consensus 95 ----~~~~V~K~aI-~~~t-~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~ 148 (248)
.+..|+-+-+ --++ .+|..+-+ ...+..+-...+||.+|=.
T Consensus 115 LllRRTESVvEKmLtnW~sicLY~~Lke-------------~aGepLf~L~~AiK~QveK 161 (539)
T PF08337_consen 115 LLLRRTESVVEKMLTNWMSICLYQFLKE-------------CAGEPLFLLYKAIKQQVEK 161 (539)
T ss_dssp CTTSSSSSHHHHHHHHHHHHHTHHHHHH-------------TTHHHHHHHHHHHHHHHCT
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhc-------------ccchHHHHHHHHHHHHHhc
Confidence 1234554433 3333 66765441 2358999999999998754
No 108
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=34.48 E-value=3.5e+02 Score=27.56 Aligned_cols=99 Identities=21% Similarity=0.143 Sum_probs=55.3
Q ss_pred CChHHHHH---HHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCC
Q 025778 20 GDLAVKLS---SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (248)
Q Consensus 20 ~d~~~k~~---~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~ 96 (248)
.+..++++ -|-++--.+-+.-|+.+.-++|.+..+-...+++=+-.+--+.--+..+.+|.+.++++.|..-+.|.+
T Consensus 170 v~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 170 VIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccc
Confidence 34555555 122333333356677555556655555333333333333223334456779999999999998888765
Q ss_pred h-----HHHHHHHHhhhhhhHHHHHHH
Q 025778 97 S-----GVAGKSIVCGTNFFCRVLEEI 118 (248)
Q Consensus 97 ~-----~V~K~aI~~~t~lY~~~l~~~ 118 (248)
. .+.|..-+-.-..-+..||.+
T Consensus 250 ~~~i~~~Ilk~ia~~~pv~l~~~~E~l 276 (851)
T KOG3723|consen 250 HNDIILNILKEIAVYEPVALNSFLEML 276 (851)
T ss_pred chhHHHHHHHHHHhcCccchhhHHHHH
Confidence 3 456666555555555555433
No 109
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=34.36 E-value=3.7e+02 Score=29.14 Aligned_cols=109 Identities=18% Similarity=0.153 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccC----CchhHHHHHHHHHHHHHhhhh-
Q 025778 5 SRDQALSLLAAANNH--GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS----SPESLVRKSLIETIEDIGLKA- 77 (248)
Q Consensus 5 ~~~~~~~lln~A~~~--~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~----~~~~~vrk~~~~fiee~~~~~- 77 (248)
---++..-|.+|... .+.+.|++.|.-.-+.+. +..+++++|=+.++-+.- .+...|||--+--|......-
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls-r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS-RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH-hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 344666677777755 555689999999999885 888888898888875532 345578887776666544332
Q ss_pred hhhhhhHHHHHHHhhccC-ChHHHHHHHHhhhhhhHHH
Q 025778 78 MEHSSILMPVLLAFLRDG-DSGVAGKSIVCGTNFFCRV 114 (248)
Q Consensus 78 ~e~~~~~l~~L~~lL~d~-~~~V~K~aI~~~t~lY~~~ 114 (248)
.+....+++.|..=|... .+..++.-|||.+.+-|.+
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Confidence 344455666665555544 5778899999999887754
No 110
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=33.91 E-value=77 Score=21.93 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHH
Q 025778 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSL 66 (248)
Q Consensus 28 ~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~ 66 (248)
++.+.|+++ ..+|++++.++..+- ..++++...+
T Consensus 9 qf~~lR~~v-q~NP~lL~~lLqql~----~~nP~l~q~I 42 (59)
T PF09280_consen 9 QFQQLRQLV-QQNPQLLPPLLQQLG----QSNPQLLQLI 42 (59)
T ss_dssp HHHHHHHHH-HC-GGGHHHHHHHHH----CCSHHHHHHH
T ss_pred HHHHHHHHH-HHCHHHHHHHHHHHh----ccCHHHHHHH
Confidence 567788888 499988877777652 3455555544
No 111
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=33.12 E-value=5.1e+02 Score=25.95 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhcCCCchHHh-hhHHHHhccC-CchhHHHHHHHHHHHHHhhhhhhhhhhHH-----HHHHHhhccCCh
Q 025778 25 KLSSLKQVRGILSSADPSLAAE-LFPYLVELQS-SPESLVRKSLIETIEDIGLKAMEHSSILM-----PVLLAFLRDGDS 97 (248)
Q Consensus 25 k~~~L~q~relll~~~p~ll~~-~l~~il~~~~-~~~~~vrk~~~~fiee~~~~~~e~~~~~l-----~~L~~lL~d~~~ 97 (248)
+++.=+-+.+.+...+-+.+.+ =+-.|+.++- ...+++.|.++++||-.++-..+-+...+ +.+.+-.+-.||
T Consensus 199 Rve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P 278 (832)
T KOG3678|consen 199 RVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDP 278 (832)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCH
Confidence 4444444444444333332222 2333445543 34569999999999999887766664444 445555667789
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHH-HHHHHHH-------hc----cCCCcchHHHHHHH
Q 025778 98 GVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAI-------AL----EPGLVGTKLLALKF 165 (248)
Q Consensus 98 ~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~l-K~~Il~~-------~~----d~~n~Gvr~~aiKF 165 (248)
.+++.+.++.+++-=..=..+-.+.+ . .-...|=-..++ |+.++++ .+ +-+.+=-|--++|.
T Consensus 279 ~lLRH~ALAL~N~~L~~~~a~qrrmv-e-----Kr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaL 352 (832)
T KOG3678|consen 279 ALLRHCALALGNCALHGGQAVQRRMV-E-----KRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLAL 352 (832)
T ss_pred HHHHHHHHHhhhhhhhchhHHHHHHH-H-----hhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhh
Confidence 99999999888754222211111111 0 012233322222 3444432 00 12223334556788
Q ss_pred HhHHHhhccCCCCCcccccccCCcccccccccCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 025778 166 LETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQ 225 (248)
Q Consensus 166 ~e~vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~ 225 (248)
+|-+|.+.-|+.=.-+..+..+ .-.-+|+-+-.|+|+-..+|+.+-+.|-.-++...
T Consensus 353 VEPlva~~DP~~FARD~hd~aQ---G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaI 409 (832)
T KOG3678|consen 353 VEPLVASLDPGRFARDAHDYAQ---GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAI 409 (832)
T ss_pred hhhhhhccCcchhhhhhhhhhc---cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHH
Confidence 8888877766521100111110 12224555667899999999998887766555433
No 112
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.90 E-value=89 Score=32.28 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=43.0
Q ss_pred CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccC
Q 025778 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (248)
Q Consensus 40 ~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~ 95 (248)
+.+-++++++++.+.+.+-+++.-|-.+--|..+..+..+- ..|++.|..+++-.
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~ 398 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETK 398 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhc
Confidence 44556788888888888888877777777777777777666 99999999999844
No 113
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=32.31 E-value=3.8e+02 Score=31.42 Aligned_cols=109 Identities=10% Similarity=0.093 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCC--CchH---HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh
Q 025778 4 VSRDQALSLLAAANNH-GDLAVKLSSLKQVRGILSSAD--PSLA---AELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (248)
Q Consensus 4 s~~~~~~~lln~A~~~-~d~~~k~~~L~q~relll~~~--p~ll---~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~ 77 (248)
.+...+..|+.+-... ....+|-..+++.|++.-+++ -.++ ++++|.++.+-...+..+|...+..+...+..+
T Consensus 10 ~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e 89 (2102)
T PLN03200 10 GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE 89 (2102)
T ss_pred chHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence 5667888888887754 345577788999999996552 2244 458898888766677889998887777776532
Q ss_pred h--hh--hhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHH
Q 025778 78 M--EH--SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 78 ~--e~--~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l 115 (248)
. .. ...+++.|..+|+..++..-+.+ ++.||-+..
T Consensus 90 ~nk~~Iv~~GaIppLV~LL~sGs~eaKe~A---A~AL~sLS~ 128 (2102)
T PLN03200 90 DLRVKVLLGGCIPPLLSLLKSGSAEAQKAA---AEAIYAVSS 128 (2102)
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHH---HHHHHHHHc
Confidence 1 11 26788889999988877655444 344444444
No 114
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=32.08 E-value=1.9e+02 Score=30.17 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHh-cCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh--hhhhhhHHHHHHHhhccCChHHH
Q 025778 24 VKLSSLKQVRGILS-SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--MEHSSILMPVLLAFLRDGDSGVA 100 (248)
Q Consensus 24 ~k~~~L~q~relll-~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~--~e~~~~~l~~L~~lL~d~~~~V~ 100 (248)
.+...|..+-+++- ...+..-..|+|-+..+..|+.++||-=++.++..+.+.- +..=..+.+.+..|..|++..|-
T Consensus 573 ~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr 652 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVR 652 (759)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchh
Confidence 44555555555542 2455667889999999999999999999999999887633 22224455556666679988888
Q ss_pred HHHHHhhhhh
Q 025778 101 GKSIVCGTNF 110 (248)
Q Consensus 101 K~aI~~~t~l 110 (248)
=+++++.+.+
T Consensus 653 ~~a~~a~~~i 662 (759)
T KOG0211|consen 653 YRAILAFGSI 662 (759)
T ss_pred HHHHHHHHHH
Confidence 7888877654
No 115
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.82 E-value=2.2e+02 Score=21.27 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~ 77 (248)
+.++-.++.++-.++|..+=.+.+.. |- -|.+-++++-.++....+....-|+.++.++...|+..
T Consensus 2 ~k~i~~~l~ey~~~~D~~ea~~~l~~---L~---~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 2 KKKIFLIIEEYLSSGDTDEAVHCLLE---LK---LPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHH---hC---CCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 45677788899888887655555543 32 24567788888887777776778999999999988655
No 116
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.19 E-value=4.2e+02 Score=25.00 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHh
Q 025778 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (248)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~l 91 (248)
+.+....+-+-+.||.-.-.++..+++-+.|+..-.||.+.-..|+++..+++.+..++.+....
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Confidence 33333344443445544444555566555566666777777777777777776666665554443
No 117
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.66 E-value=6.6e+02 Score=26.41 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhH---HHHhcc--CCchhHHHHHHHHHHHHHhhhh-
Q 025778 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFP---YLVELQ--SSPESLVRKSLIETIEDIGLKA- 77 (248)
Q Consensus 4 s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~---~il~~~--~~~~~~vrk~~~~fiee~~~~~- 77 (248)
++.+++.+..|.++.+ ++.-=...+++++|+.- . ..|-.+|+. .++..- ......+=+|++-|++..-..+
T Consensus 2 ~~~~r~~~If~k~Q~s-~agh~~kl~~k~~em~t-~-~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~ 78 (892)
T KOG2025|consen 2 SSLERMQLIFNKIQQS-DAGHYSKLLAKVMEMLT-A-HEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDK 78 (892)
T ss_pred hHHHHHHHHHHHHHhh-hcchHHHHHHHHHHhhh-H-hhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCc
Confidence 4678888899988875 11112456777777662 2 223344444 333332 2223478899999999775444
Q ss_pred -hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCc
Q 025778 78 -MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (248)
Q Consensus 78 -~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~ 156 (248)
.+++...+..|..-.+..|-.|-+|+.|..+ .+.+..+ .. ++.. ++.++..++..+.| .-.
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila----~l~d~~~-------ei---dd~v---fn~l~e~l~~Rl~D-rep 140 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILA----LLSDENA-------EI---DDDV---FNKLNEKLLIRLKD-REP 140 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHH----HHhcccc-------cc---CHHH---HHHHHHHHHHHHhc-cCc
Confidence 3445555555555555678889988776433 3332111 01 2343 44667777774434 445
Q ss_pred chHHHHHHHHhHH
Q 025778 157 GTKLLALKFLETH 169 (248)
Q Consensus 157 Gvr~~aiKF~e~v 169 (248)
.||+.|++-+.+.
T Consensus 141 ~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 141 NVRIQAVLALSRL 153 (892)
T ss_pred hHHHHHHHHHHHH
Confidence 7999999877654
No 118
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.61 E-value=2.3e+02 Score=29.87 Aligned_cols=121 Identities=20% Similarity=0.137 Sum_probs=59.7
Q ss_pred HhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHhh-ccC-ChHHHHHHHHhhhhhhHHH-HHHHh
Q 025778 45 AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHS-SILMPVLLAFL-RDG-DSGVAGKSIVCGTNFFCRV-LEEIT 119 (248)
Q Consensus 45 ~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~~e~~-~~~l~~L~~lL-~d~-~~~V~K~aI~~~t~lY~~~-l~~~a 119 (248)
+|.++.+.+- .+..-.+-||-.+-=|-...+++-+.+ ..-+..|..-| +|. ||..+|.+..++..+++.= +.++.
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 4444444322 123333455554444443344432221 22222222222 332 6677777776666655432 22332
Q ss_pred hHhhhcCCccchHHHHHHHHHHHH--HH---HHHHhccCCCcchHHHHHHHHhHHHh
Q 025778 120 MQFRWHGKVERWLEELWTWMVRFK--DA---VFAIALEPGLVGTKLLALKFLETHVL 171 (248)
Q Consensus 120 ~~~~~~~~~~~~~~~~W~~m~~lK--~~---Il~~~~d~~n~Gvr~~aiKF~e~vIl 171 (248)
.+ ++ ..++-..|-+=.-+| +. +++ .|+..+-+||..+|+.++.++=
T Consensus 101 dd----s~-qsdd~g~~iae~fik~qd~I~lll~-~~e~~DF~VR~~aIqLlsalls 151 (970)
T KOG0946|consen 101 DD----ST-QSDDLGLWIAEQFIKNQDNITLLLQ-SLEEFDFHVRLYAIQLLSALLS 151 (970)
T ss_pred cc----ch-hhhHHHHHHHHHHHcCchhHHHHHH-HHHhhchhhhhHHHHHHHHHHh
Confidence 21 11 112344554433333 33 355 6799999999999999987653
No 119
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=30.02 E-value=3.8e+02 Score=23.44 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=26.7
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhccC----ChHHHHHHHHhhhhhhHHHH
Q 025778 70 IEDIGLKAMEHSSILMPVLLAFLRDG----DSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 70 iee~~~~~~e~~~~~l~~L~~lL~d~----~~~V~K~aI~~~t~lY~~~l 115 (248)
+.-+.++.|++.++++++|..+-.+. .+...|..+.+.--.+|..|
T Consensus 140 L~~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l 189 (239)
T PF11935_consen 140 LSNIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFL 189 (239)
T ss_dssp HHHHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHH
Confidence 33344566777777777777665544 34445555555556666666
No 120
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=29.26 E-value=2.5e+02 Score=31.24 Aligned_cols=181 Identities=17% Similarity=0.104 Sum_probs=88.6
Q ss_pred hhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhh
Q 025778 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRW 124 (248)
Q Consensus 46 ~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~ 124 (248)
..+|.++.|-......+|--.+.-|++.++.. .|....+++.+.-++.+.+..+-|..+-+.--+....+ .+++
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l----~~~l- 890 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVL----MVGL- 890 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhh----cccc-
Confidence 34444444444555556665555555555433 34555555555555555554444443333221111111 0111
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhccCC--CCCcccccc------cCCc----ccc
Q 025778 125 HGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSD--SNDFENFTK------EGSK----QTF 192 (248)
Q Consensus 125 ~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qt~~--~~d~~~~~~------~~~~----~d~ 192 (248)
.++ . .-+---+++ ..+...+.||-++-|++-++|-+-+-. ..+|..-+. ++.+ .-.
T Consensus 891 ----~~~-----~--~Llv~pllr-~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqll 958 (1549)
T KOG0392|consen 891 ----VPY-----N--PLLVVPLLR-RMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLL 958 (1549)
T ss_pred ----ccc-----c--eeehhhhhc-ccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhc
Confidence 011 0 011222333 446777899999999999999887632 233311110 1000 013
Q ss_pred cccccCCCC-CC---CChhhHHHHHHHHHHHHHHHhhhc---cCCChhHHHHHHHHHHHHh
Q 025778 193 NISWLSGGH-PF---LDPVSLTSEANRMLGTLMDLLQSA---CNLPGSVIITVVNCLNSLC 246 (248)
Q Consensus 193 sl~~vP~~H-p~---l~~~~Le~Ea~~lL~~LL~~l~~~---ss~~~~l~~a~lnsL~~ia 246 (248)
+-+.+|+-| |+ -..++-+.||-.-|..|=+|--+. --+- +-=++.++|+||
T Consensus 959 dpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMG---LGKTLQticilA 1016 (1549)
T KOG0392|consen 959 DPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMG---LGKTLQTICILA 1016 (1549)
T ss_pred CcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeecccc---ccHHHHHHHHHH
Confidence 334555332 11 144777888888888777765532 1112 445566666665
No 121
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=28.54 E-value=6.6e+02 Score=26.72 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhh----hh-hhhhhHHHHHHHhhccCChHHHH
Q 025778 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK----AM-EHSSILMPVLLAFLRDGDSGVAG 101 (248)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~----~~-e~~~~~l~~L~~lL~d~~~~V~K 101 (248)
.-+-.+-.-+...-..+++.+.-++|-.-.++++.+|.+.++.|..+.+- .. ++...+=-.|...|..++|.|+-
T Consensus 780 ~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLg 859 (1172)
T KOG0213|consen 780 LGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLG 859 (1172)
T ss_pred hhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHH
Confidence 33334433333333346677788887776788999999999999876541 12 33444444566678888999887
Q ss_pred HHHHhhhhhhHHH
Q 025778 102 KSIVCGTNFFCRV 114 (248)
Q Consensus 102 ~aI~~~t~lY~~~ 114 (248)
.++-+.-+||-..
T Consensus 860 sILgAikaI~nvi 872 (1172)
T KOG0213|consen 860 SILGAIKAIVNVI 872 (1172)
T ss_pred HHHHHHHHHHHhc
Confidence 7777776777655
No 122
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=28.14 E-value=4.4e+02 Score=27.16 Aligned_cols=83 Identities=23% Similarity=0.163 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCCc---hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh--h--hhhhhhhHHHHHHHhhccCCh
Q 025778 25 KLSSLKQVRGILSSADPS---LAAELFPYLVELQSSPESLVRKSLIETIEDIGL--K--AMEHSSILMPVLLAFLRDGDS 97 (248)
Q Consensus 25 k~~~L~q~relll~~~p~---ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~--~--~~e~~~~~l~~L~~lL~d~~~ 97 (248)
=+.-|+.--+..+.+||. +.+.++-.+|-+...++..||+-+.++|.-+.- + +..+..-.+..|..-+-|..+
T Consensus 67 il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~ 146 (885)
T COG5218 67 ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK 146 (885)
T ss_pred HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH
Confidence 356667777767778886 888899999888778888999998887775531 1 223334444444444445455
Q ss_pred HHHHHHHHhh
Q 025778 98 GVAGKSIVCG 107 (248)
Q Consensus 98 ~V~K~aI~~~ 107 (248)
.|-..|+.|.
T Consensus 147 ~VR~eAv~~L 156 (885)
T COG5218 147 AVRREAVKVL 156 (885)
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 123
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=27.93 E-value=3.2e+02 Score=21.94 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCCh-HHHHHHHHhh
Q 025778 29 LKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS-GVAGKSIVCG 107 (248)
Q Consensus 29 L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~-~V~K~aI~~~ 107 (248)
|++++.++-.-.++-++.+..++.....+.+.+..+.++++|-+.+...+..++ ....|...+....+ .+....+..+
T Consensus 1 ~r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~-~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 1 LRKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSP-LYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHH-HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CchHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHH-HHHHHHHHHhccchhhHHHHHHHHH
Confidence 456666665446777777777777653333566777777777666665554443 33344444444444 4444544444
Q ss_pred hhhhH
Q 025778 108 TNFFC 112 (248)
Q Consensus 108 t~lY~ 112 (248)
-.-|.
T Consensus 80 ~~~f~ 84 (209)
T PF02854_consen 80 QEEFE 84 (209)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 124
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=27.73 E-value=2.1e+02 Score=28.79 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=16.5
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHhhhh
Q 025778 82 SILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (248)
Q Consensus 82 ~~~l~~L~~lL~d~~~~V~K~aI~~~t~ 109 (248)
+.+++.|..-|.|..|.|.|.++.|+..
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5555556666666666666666655543
No 125
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.68 E-value=4e+02 Score=29.32 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=47.9
Q ss_pred hhhHHHHhccCCchhHHHHHHHHHHHHHhhhhh---hhhhhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAM---EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 46 ~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~---e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+|++-+.+=..|-++-+|--+.+....+|..+. .....++.-...-|.|.+..|-|.||+-...+
T Consensus 359 ~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 359 ELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 444544455568888999999999999997653 34456666666668899999999999876543
No 126
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.57 E-value=9.7e+02 Score=27.40 Aligned_cols=110 Identities=20% Similarity=0.171 Sum_probs=63.1
Q ss_pred chHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-----hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHH
Q 025778 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLE 116 (248)
Q Consensus 42 ~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-----~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~ 116 (248)
-++..++|.+.-++.||+..|++..++. +.+...+ -++...+++-|..=+.+.-=-|--. ++..-.-++
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sI-W~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVRea----sclAL~dLl- 1067 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSI-WNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREA----SCLALADLL- 1067 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHH-HHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHH----HHHHHHHHH-
Confidence 3778999999999999999999999884 4444433 3555666665554444433222222 222222222
Q ss_pred HHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHH
Q 025778 117 EITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (248)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (248)
|+.-...+.+...+.|+.. ++ ..|.--+|||-++=||.-.+
T Consensus 1068 ----~g~~~~~~~e~lpelw~~~-------fR-vmDDIKEsVR~aa~~~~~~l 1108 (1702)
T KOG0915|consen 1068 ----QGRPFDQVKEKLPELWEAA-------FR-VMDDIKESVREAADKAARAL 1108 (1702)
T ss_pred ----cCCChHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHHHH
Confidence 3211111223344555554 44 33555569999988877544
No 127
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.39 E-value=1.1e+02 Score=32.31 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=52.7
Q ss_pred hhhHHHHhccCCchhHHHHHHHHHHHHHhh--h--hhhhhhhHHHHHHHhhccCChHHHHHHHH---hhhhhhHH-HHHH
Q 025778 46 ELFPYLVELQSSPESLVRKSLIETIEDIGL--K--AMEHSSILMPVLLAFLRDGDSGVAGKSIV---CGTNFFCR-VLEE 117 (248)
Q Consensus 46 ~~l~~il~~~~~~~~~vrk~~~~fiee~~~--~--~~e~~~~~l~~L~~lL~d~~~~V~K~aI~---~~t~lY~~-~l~~ 117 (248)
+-+.+.+...+|+.+.+|-.+.-.+..... + ......+++.....+|+|+|+-|+=.||+ |..-.||. +|+.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~d 806 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPD 806 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHH
Confidence 446667767778877777766665554443 1 23445788888999999999999999999 55556664 3444
Q ss_pred HhhHhh
Q 025778 118 ITMQFR 123 (248)
Q Consensus 118 ~a~~~~ 123 (248)
.+.++.
T Consensus 807 L~e~Y~ 812 (982)
T KOG4653|consen 807 LSEEYL 812 (982)
T ss_pred HHHHHH
Confidence 443343
No 128
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=27.18 E-value=2.1e+02 Score=28.77 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh
Q 025778 24 VKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGL 75 (248)
Q Consensus 24 ~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~ 75 (248)
+|...+.-+.-+. .-.|. .+++++|.+.+.-.|..++||+...+-+-.+|.
T Consensus 270 tK~aslellg~m~-~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 270 TKMASLELLGAMA-DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred hHHHHHHHHHHHH-HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4555554444333 23343 558888888888899999999999998887774
No 129
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.91 E-value=5.9e+02 Score=27.98 Aligned_cols=95 Identities=25% Similarity=0.249 Sum_probs=63.0
Q ss_pred HHHHHHHHhhcCCChHHHHHH-HHHHHHHHhcC----CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhh--
Q 025778 8 QALSLLAAANNHGDLAVKLSS-LKQVRGILSSA----DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-- 80 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~-L~q~relll~~----~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~-- 80 (248)
..+..|.+. ..+|..-.... +-++..++.+- +-..+..++..+-.+-...+.++++--++||--.+.+.|+.
T Consensus 785 efl~~Isag-l~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l 863 (1176)
T KOG1248|consen 785 EFLSIISAG-LVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL 863 (1176)
T ss_pred HHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345555544 44554444444 66777766543 33355555555555566788999999999999888887653
Q ss_pred ---hhhHHHHHHHhhccCChHHHHHH
Q 025778 81 ---SSILMPVLLAFLRDGDSGVAGKS 103 (248)
Q Consensus 81 ---~~~~l~~L~~lL~d~~~~V~K~a 103 (248)
...+++.+..++.|....+.+++
T Consensus 864 ~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 864 SPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 36688888888888776665554
No 130
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.64 E-value=4.7e+02 Score=27.39 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCC--chHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh----hhhhhhhhHHHHHHHhhccCChHHH
Q 025778 27 SSLKQVRGILSSADP--SLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----KAMEHSSILMPVLLAFLRDGDSGVA 100 (248)
Q Consensus 27 ~~L~q~relll~~~p--~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~----~~~e~~~~~l~~L~~lL~d~~~~V~ 100 (248)
+-|..--+-+...++ ++++.++-.+|-+...++-.||.-+..+|.-+.- .+..........+..-+.|.-|+|-
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHH
Confidence 444444444444444 3888999999888778888999999988886643 3345556777777777778888888
Q ss_pred HHHHHhhhhhh
Q 025778 101 GKSIVCGTNFF 111 (248)
Q Consensus 101 K~aI~~~t~lY 111 (248)
.+|+.|.+-+-
T Consensus 144 iqAv~aLsrlQ 154 (892)
T KOG2025|consen 144 IQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHHHHh
Confidence 88888776543
No 131
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.55 E-value=6.1e+02 Score=26.78 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhh------hhhhhHHHHHHHhhccCChHH
Q 025778 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM------EHSSILMPVLLAFLRDGDSGV 99 (248)
Q Consensus 26 ~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~------e~~~~~l~~L~~lL~d~~~~V 99 (248)
.+.|..+-+.+.+ ..-+.-+.+.|+++-...++.+|-++..|+..-+++.. +-+..+++.+....+|.+..|
T Consensus 353 ~d~l~~~~d~~~n--s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~V 430 (815)
T KOG1820|consen 353 RDALLKALDAILN--STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDV 430 (815)
T ss_pred HHHHHHHHHHHHh--cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHH
Confidence 3555666666654 33356778888888888888888887777775554332 345777888888889999999
Q ss_pred HHHHHHhhhhhhHHHHHHHhhHhhh
Q 025778 100 AGKSIVCGTNFFCRVLEEITMQFRW 124 (248)
Q Consensus 100 ~K~aI~~~t~lY~~~l~~~a~~~~~ 124 (248)
-+-+--+++.+|+..=+.+..+.+.
T Consensus 431 R~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 431 RKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999988888776653
No 132
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=25.93 E-value=5.2e+02 Score=23.67 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=11.2
Q ss_pred chHHHHHHHHhHHH
Q 025778 157 GTKLLALKFLETHV 170 (248)
Q Consensus 157 Gvr~~aiKF~e~vI 170 (248)
.+|.+.|+|+=..+
T Consensus 129 siR~~fI~F~Lsfl 142 (330)
T PF11707_consen 129 SIRTNFIRFWLSFL 142 (330)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999984443
No 133
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=25.45 E-value=1.9e+02 Score=29.09 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=46.9
Q ss_pred CCchHHhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhh------hhhhhhHHHHHHHhhccCChHHHHHHHHhhhh
Q 025778 40 DPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKA------MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (248)
Q Consensus 40 ~p~ll~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~------~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~ 109 (248)
+|+.+.+.+-.+-.+ ...+..-+|=-+++|+.-.++-. ...++.+-.-...||+|++..|...|+.+++.
T Consensus 473 ~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~ 549 (559)
T PF14868_consen 473 DPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQ 549 (559)
T ss_pred ChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 455555555555433 34454558888899999887622 23445555555666899999999999988774
No 134
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.28 E-value=1e+03 Score=26.44 Aligned_cols=113 Identities=11% Similarity=0.145 Sum_probs=72.9
Q ss_pred cchHHHHHHHHHHhhcC----CChHHHHHH-----------HHHHHHHHhcCC--CchHHhhhHHHHhcc-CCchhHHHH
Q 025778 3 AVSRDQALSLLAAANNH----GDLAVKLSS-----------LKQVRGILSSAD--PSLAAELFPYLVELQ-SSPESLVRK 64 (248)
Q Consensus 3 ~s~~~~~~~lln~A~~~----~d~~~k~~~-----------L~q~relll~~~--p~ll~~~l~~il~~~-~~~~~~vrk 64 (248)
+++++.+..+|..+... .....++=+ .+.+-.++-.++ ++++.+++.++-..- .+.+....|
T Consensus 214 ~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k 293 (1251)
T KOG0414|consen 214 SSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPK 293 (1251)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhcccccchh
Confidence 35667777777666532 222233322 223333333333 778888888774321 124667889
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHH
Q 025778 65 SLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 65 ~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l 115 (248)
-+..|+-|..-.-|.++.+-+..|..+|+.+.-..-..+++.++++....+
T Consensus 294 ~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l 344 (1251)
T KOG0414|consen 294 IVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASEL 344 (1251)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999888888888888888887777766666666677777777666
No 135
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=23.95 E-value=82 Score=30.36 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=36.6
Q ss_pred CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhc
Q 025778 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (248)
Q Consensus 40 ~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~ 93 (248)
-|+|.++-++.-+++..|.+.-+|++.+.=+-..|+- +.++++.++|..||+
T Consensus 55 fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 55 FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLN 106 (460)
T ss_pred CchhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHH
Confidence 3555555555556666777888899887766666665 677788888888777
No 136
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=23.30 E-value=6.2e+02 Score=26.16 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh--hhhhhhhhH
Q 025778 8 QALSLLAAANNHGD-LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KAMEHSSIL 84 (248)
Q Consensus 8 ~~~~lln~A~~~~d-~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~--~~~e~~~~~ 84 (248)
+++-.|-.|..-+| .+..+.-|-+....+ ..+.+-..|.|-++.+=..++..+|=-+.+.|++-.. ...++-.++
T Consensus 293 kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~l--d~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I 370 (690)
T KOG1243|consen 293 KVLPILLAALEFGDAASDFLTPLFKLGKDL--DEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQI 370 (690)
T ss_pred HHHHHHHHHhhccccchhhhhHHHHhhhhc--cccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchh
Confidence 34444444444444 445555555555444 2222445577777666456666778778777775542 445677899
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhhhhHHHH
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l 115 (248)
++.+..-+.|.|+.+.-..+.++..+-+.+=
T Consensus 371 ~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 371 FPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred HHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999998888888877554
No 137
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.27 E-value=4.4e+02 Score=21.99 Aligned_cols=85 Identities=12% Similarity=0.205 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCC---CchHHhhhHHHHhccCCc--hhHHHHHHHHHHHHHhhhhhhhh-----hhHHHHHHHhhccCCh
Q 025778 28 SLKQVRGILSSAD---PSLAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLRDGDS 97 (248)
Q Consensus 28 ~L~q~relll~~~---p~ll~~~l~~il~~~~~~--~~~vrk~~~~fiee~~~~~~e~~-----~~~l~~L~~lL~d~~~ 97 (248)
.|..-.||.-|+. ..+-+.|+.++..+-..+ +..+-+--.+++|.+....+.+- -.-++.|...|.+.++
T Consensus 37 ~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~ 116 (160)
T PF11841_consen 37 ALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQ 116 (160)
T ss_pred HHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCH
Confidence 4888888887653 246689999998884332 46777788889998876554322 3346778888888888
Q ss_pred HHHHHHHHhhhhhhH
Q 025778 98 GVAGKSIVCGTNFFC 112 (248)
Q Consensus 98 ~V~K~aI~~~t~lY~ 112 (248)
.+...+|.-...+|.
T Consensus 117 ~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 117 EIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888877776666654
No 138
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=23.14 E-value=4.2e+02 Score=21.60 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHH
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYL 51 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~i 51 (248)
+++....+.......-..++-+.+-..|..+. ++|..++.|+..+
T Consensus 4 ~~~l~~i~~~~p~~~l~~~ek~llw~~R~~~~-~~p~~lp~~L~sv 48 (152)
T cd00864 4 RKPLLAILLYPPFSTLTEEEKELLWKFRYYLL-NVPKALPKLLKSV 48 (152)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHh-hChHHHHHHHHHc
Confidence 44555555555454445578888889999886 6777666666654
No 139
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=22.41 E-value=6.6e+02 Score=23.66 Aligned_cols=189 Identities=18% Similarity=0.163 Sum_probs=98.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCC--CchHHhhhHHHHhcc-CCchhHHHHHHHHHHHHHh----hhhhhhhh
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSAD--PSLAAELFPYLVELQ-SSPESLVRKSLIETIEDIG----LKAMEHSS 82 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~--p~ll~~~l~~il~~~-~~~~~~vrk~~~~fiee~~----~~~~e~~~ 82 (248)
-++++-+....+...+...++-+-- +.+|. .+.++++++...... .......|....+.+-=+. .+.-....
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~la~-LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~ 270 (415)
T PF12460_consen 192 QSLLNLALSSEDEFSRLAALQLLAS-LVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT 270 (415)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHH-HHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH
Confidence 3455555555665566666665554 44783 346777887776543 3333444444444332222 24445567
Q ss_pred hHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHH-------hccCCC
Q 025778 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAI-------ALEPGL 155 (248)
Q Consensus 83 ~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~-------~~d~~n 155 (248)
..++.|..++.+ +.+-+.+..++.-+..-.=+...+.+. ....-.| |++++.. .+.+.+
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~------a~vklLy------kQR~F~~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENH------ANVKLLY------KQRFFTQVLPKLLEGFKEAD 336 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcccc------chhhhHH------hHHHHHHHHHHHHHHHhhcC
Confidence 778888888888 333333333322222110000000000 1112222 3333331 223333
Q ss_pred cchHHHHHHHHhHHHhhccCCCCCcccccccCCcccccccccCCCCCCCChhhHHHHHHHHHHHHHHHhhhccCCChhHH
Q 025778 156 VGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVI 235 (248)
Q Consensus 156 ~Gvr~~aiKF~e~vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~ss~~~~l~ 235 (248)
+++|...++-+..+ =.+-| .+.+..|...++=.|+..|..+ +..+.
T Consensus 337 ~~~k~~yL~ALs~l----------------------------l~~vP---~~vl~~~l~~LlPLLlqsL~~~---~~~v~ 382 (415)
T PF12460_consen 337 DEIKSNYLTALSHL----------------------------LKNVP---KSVLLPELPTLLPLLLQSLSLP---DADVL 382 (415)
T ss_pred hhhHHHHHHHHHHH----------------------------HhhCC---HHHHHHHHHHHHHHHHHHhCCC---CHHHH
Confidence 44565555433222 11222 6788999999999999999633 44578
Q ss_pred HHHHHHHHHHhh
Q 025778 236 ITVVNCLNSLCR 247 (248)
Q Consensus 236 ~a~lnsL~~iak 247 (248)
.+++++|..+.+
T Consensus 383 ~s~L~tL~~~l~ 394 (415)
T PF12460_consen 383 LSSLETLKMILE 394 (415)
T ss_pred HHHHHHHHHHHH
Confidence 889998887764
No 140
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=22.14 E-value=3.4e+02 Score=20.23 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHHHhcCC-Cc-hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh
Q 025778 20 GDLAVKLSSLKQVRGILSSAD-PS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME 79 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~-p~-ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e 79 (248)
+..+.|..-|...++++.+++ +. -.+.++.=+++.-.|+++-|==-.+.-+.+.|..+++
T Consensus 15 p~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 15 PLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred CCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 667889999999999998887 42 3355555444444566654444444445555544444
No 141
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=22.00 E-value=4.4e+02 Score=21.50 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhccCCCCCcccccccCCcccccccccCCCCCCCChhhHHHHHHHHH
Q 025778 138 WMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRML 217 (248)
Q Consensus 138 ~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL 217 (248)
.+..++.+|.+ ++.+.+..-|-+.+.++-.+|..-. +..|.+.+...+
T Consensus 22 ~l~~l~~ri~~-LL~s~~~~~rw~G~~Ll~~~~~~~~-------------------------------~e~l~~~~~~W~ 69 (165)
T PF08167_consen 22 ALHKLVTRINS-LLQSKSAYSRWAGLCLLKVTVEQCS-------------------------------WEILLSHGSQWL 69 (165)
T ss_pred HHHHHHHHHHH-HhCCCChhhHHHHHHHHHHHHHHhh-------------------------------HHHHHHHHHHHH
Confidence 45677888999 6777777778888877755543311 245667777777
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHh
Q 025778 218 GTLMDLLQSACNLPGSVIITVVNCLNSLC 246 (248)
Q Consensus 218 ~~LL~~l~~~ss~~~~l~~a~lnsL~~ia 246 (248)
..|+..++.+. +..+.-+++.+|+.|.
T Consensus 70 ~~Ll~~L~~~~--~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 70 RALLSILEKPD--PPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 77777777532 2344556666666553
No 142
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.97 E-value=7.1e+02 Score=23.84 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=34.7
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 49 PYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 49 ~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+.++..-.+.++.||+-+++.+.. +.. ...+.|..+|+|+|+.|...++.+.+.+
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~---r~~----~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGA---HRH----DPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHh---hcc----ChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 333334356677788766644443 211 2345677778899999988888877654
No 143
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.93 E-value=1.2e+03 Score=26.30 Aligned_cols=95 Identities=18% Similarity=0.012 Sum_probs=51.1
Q ss_pred hhhhhHHHHHHHhhc--cCChHHHHHHHHhhhhhhHHHHHHHhh--------HhhhcCCccchHHHHHHHHHHHHHHHHH
Q 025778 79 EHSSILMPVLLAFLR--DGDSGVAGKSIVCGTNFFCRVLEEITM--------QFRWHGKVERWLEELWTWMVRFKDAVFA 148 (248)
Q Consensus 79 e~~~~~l~~L~~lL~--d~~~~V~K~aI~~~t~lY~~~l~~~a~--------~~~~~~~~~~~~~~~W~~m~~lK~~Il~ 148 (248)
+.+....+.+..-|+ |..-..++.+|+-+..-.+.+=+.+++ .....+ -+...+++|..|.++|..+.+
T Consensus 1559 ~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~-a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1559 EDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATS-ATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555554 334456788888776665555444321 000011 123468999999999999988
Q ss_pred HhccC-----CCcchHHHHHHHHhHHHhhcc
Q 025778 149 IALEP-----GLVGTKLLALKFLETHVLLFT 174 (248)
Q Consensus 149 ~~~d~-----~n~Gvr~~aiKF~e~vIl~qt 174 (248)
+-.+. .-.+++..|..-=+..=.+|+
T Consensus 1638 ns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~ 1668 (1758)
T KOG0994|consen 1638 NSAEAKQAEKTAGSAKEQALSAEQGLEILQK 1668 (1758)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43222 124556555544444334443
No 144
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.50 E-value=6.7e+02 Score=23.42 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCC--chhHHHHHHHHHHHH
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSS--PESLVRKSLIETIED 72 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~--~~~~vrk~~~~fiee 72 (248)
+++++-|......+..+ .+.++++-+.+++-+- +.++.|++.+.| .++++...+.+|.+.
T Consensus 13 ~~~i~sl~~~~~~~s~s--~~s~~~~t~~Lle~~Q----evv~~ile~~~di~~~~~L~~Lv~~YFd~ 74 (336)
T PF05055_consen 13 NRVISSLATGVETRSLS--FDSLKEVTECLLEMNQ----EVVKVILECKKDIWKNPELFRLVSDYFDS 74 (336)
T ss_pred HHHHHHhhhccccCCCC--hHHHHHHHHHHhCCCh----HHHHHHHHHHHHhhcChhHHHHHHHHHHh
Confidence 35555555544433332 8999999999987666 455555555433 688999999999983
No 145
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=21.41 E-value=2.1e+02 Score=25.85 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHH
Q 025778 23 AVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDI 73 (248)
Q Consensus 23 ~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~ 73 (248)
.+.++.|++|.+++...+. .+.+-++++++-. ...++|++ +.+||.+.
T Consensus 207 ~e~i~alr~ayk~lfr~~~-~~~e~~~~i~~~~-~~~~~v~~-~~dFi~~s 254 (260)
T COG1043 207 REEIHALRKAYKLLFRSGL-TLREALEEIAEEY-ADNPEVKE-FIDFIASS 254 (260)
T ss_pred HHHHHHHHHHHHHHeeCCC-CHHHHHHHHHHHh-cCChHHHH-HHHHHhhc
Confidence 4789999999999986665 4568888886532 33445554 45888754
No 146
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=1.9e+02 Score=29.35 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=50.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCC------Cc---hH-HhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhh
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSAD------PS---LA-AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKA 77 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~------p~---ll-~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~ 77 (248)
+++|=++...+|..-+=..|++++|.+-+.. |. |+ |++++ +++. ....++..++|+++.|--.|-.+
T Consensus 49 LellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~d-l~~iydkw~~~n~K~~LaDilS~l~m~y 126 (881)
T COG5110 49 LELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLD-LLEIYDKWLEGNKKRWLADILSALCMVY 126 (881)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcch-HHHHHhhccCcchhhHHHHHHHHHeeec
Confidence 6788888888888888999999999997553 22 22 45554 4443 55678899999999999888543
No 147
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=21.32 E-value=1.9e+02 Score=24.77 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh
Q 025778 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME 79 (248)
Q Consensus 26 ~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e 79 (248)
++++.+.|+++++.+... ..+..++.|...++..=|+=+++.|--.|.....
T Consensus 85 lS~~~~gR~~~l~~~~~~--~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~ 136 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYD--GPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS 136 (192)
T ss_pred hcCCHHHHHHHhCchhhh--hHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence 567788899998555433 2566666676566655566667888888865433
No 148
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.28 E-value=5.2e+02 Score=26.50 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHH------HHHhhccCChHHHHHHHHhhhhhhHHH
Q 025778 61 LVRKSLIETIEDIGLKAMEHSSILMPV------LLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (248)
Q Consensus 61 ~vrk~~~~fiee~~~~~~e~~~~~l~~------L~~lL~d~~~~V~K~aI~~~t~lY~~~ 114 (248)
.-|-....++..+..+++-++.+++.+ |..|..|.++.|+=.|+.+.+.+.|.+
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 455555566666666666666554443 444556899999999999888777643
No 149
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=21.21 E-value=8.2e+02 Score=24.31 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhcCCC---hHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccC-CchhHHHHHHHHHHHHHhhhhhhhh
Q 025778 6 RDQALSLLAAANNHGD---LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS-SPESLVRKSLIETIEDIGLKAMEHS 81 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d---~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~-~~~~~vrk~~~~fiee~~~~~~e~~ 81 (248)
.+++++.++......| .++-...|+++..-+-.-+.. -..++..++.+-= ..+..+++-..+|+...+..++.++
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl 109 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYL 109 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGH
T ss_pred HHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556666643222233 245556666666666433444 5677888877732 4677889999999999999999999
Q ss_pred hhHHHHHHHhhccC
Q 025778 82 SILMPVLLAFLRDG 95 (248)
Q Consensus 82 ~~~l~~L~~lL~d~ 95 (248)
..++..|...+...
T Consensus 110 ~~vl~~LV~~f~p~ 123 (563)
T PF05327_consen 110 SPVLSMLVKNFIPP 123 (563)
T ss_dssp HHHHHHHHHGGGS-
T ss_pred HHHHHHHHHhccCC
Confidence 99998888776643
No 150
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.06 E-value=5.5e+02 Score=25.58 Aligned_cols=114 Identities=17% Similarity=0.028 Sum_probs=74.3
Q ss_pred HhhhHHHHhccCCchhHHHHHHHHHHHHHhhh-hhh---hh--hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHH
Q 025778 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AME---HS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (248)
Q Consensus 45 ~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~-~~e---~~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~ 118 (248)
.+++|.++.+-...+..+||-.+=-|--++.. .++ ++ .-+++.+..||.-.|+-+++.+..+..+|....=
T Consensus 363 a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e--- 439 (514)
T KOG0166|consen 363 ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE--- 439 (514)
T ss_pred cccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH---
Confidence 57888888876677788999777666655532 122 22 3377888889987888888888888777776554
Q ss_pred hhHhhhcCCccchHHHHHHHHH---HHHHHHHHHhccCCCcchHHHHHHHHhHHH
Q 025778 119 TMQFRWHGKVERWLEELWTWMV---RFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (248)
Q Consensus 119 a~~~~~~~~~~~~~~~~W~~m~---~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (248)
++--. .. +.+..|. .-.+.|=. +..++|++|--.|.|-+++.-
T Consensus 440 --~~~~~-----~~-n~~~~~IEe~ggldkiE~-LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 440 --AEKNR-----GT-NPLAIMIEEAGGLDKIEN-LQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred --Hhccc-----cc-cHHHHHHHHccChhHHHH-hhccccHHHHHHHHHHHHHhc
Confidence 22100 00 1222211 23344544 668999999999999887763
No 151
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=20.43 E-value=4.6e+02 Score=25.69 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhcc
Q 025778 60 SLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (248)
Q Consensus 60 ~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d 94 (248)
.+|||-+.+++-.+|+++|.++...-.-|...+..
T Consensus 282 ~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~ 316 (459)
T PF14764_consen 282 AEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGS 316 (459)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcc
Confidence 49999999999999999999887776666666653
Done!