Query 025778
Match_columns 248
No_of_seqs 122 out of 168
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 17:23:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gs3_A Symplekin, LD45768P; he 100.0 9.8E-68 3.4E-72 469.1 26.9 233 3-248 11-244 (257)
2 3o2t_A Symplekin; heat repeat, 100.0 1.2E-66 4.3E-71 484.3 26.8 236 3-248 21-257 (386)
3 2qk1_A Protein STU2; STU2P, XM 96.9 0.097 3.3E-06 44.8 18.2 139 16-172 24-176 (249)
4 2vgl_B AP-2 complex subunit be 96.7 0.016 5.6E-07 55.5 13.1 91 18-111 96-188 (591)
5 2qk2_A LP04448P; mini spindles 96.6 0.19 6.4E-06 41.9 17.2 176 16-225 23-208 (242)
6 2qk2_A LP04448P; mini spindles 96.4 0.088 3E-06 44.0 14.0 106 8-116 98-209 (242)
7 3ltm_A Alpha-REP4; protein eng 96.4 0.15 5.2E-06 41.2 15.0 90 8-110 19-108 (211)
8 2vgl_B AP-2 complex subunit be 96.3 0.18 6.1E-06 48.2 17.0 137 11-169 16-187 (591)
9 1oyz_A Hypothetical protein YI 96.2 0.28 9.7E-06 41.4 16.4 123 44-169 88-219 (280)
10 2db0_A 253AA long hypothetical 96.2 0.03 1E-06 47.4 9.6 101 9-110 108-208 (253)
11 3u0r_A Apoptosis inhibitor 5; 95.9 0.035 1.2E-06 52.7 9.7 114 57-172 39-164 (507)
12 2qk1_A Protein STU2; STU2P, XM 95.7 0.24 8.1E-06 42.3 13.4 72 44-115 144-223 (249)
13 4fdd_A Transportin-1; heat rep 95.7 0.15 5.1E-06 50.4 13.7 142 10-169 130-283 (852)
14 4db6_A Armadillo repeat protei 95.6 0.66 2.3E-05 37.0 15.4 141 10-169 56-207 (210)
15 1b3u_A Protein (protein phosph 95.6 0.26 9E-06 45.4 14.4 105 7-111 125-231 (588)
16 1b3u_A Protein (protein phosph 95.5 0.23 7.9E-06 45.9 13.8 92 20-111 453-547 (588)
17 3ltm_A Alpha-REP4; protein eng 95.4 0.4 1.4E-05 38.6 13.5 142 10-167 52-199 (211)
18 4fdd_A Transportin-1; heat rep 95.1 0.19 6.3E-06 49.7 12.2 106 6-111 88-202 (852)
19 3ltj_A Alpharep-4; protein eng 94.8 1.2 4E-05 35.5 15.0 137 17-169 23-165 (201)
20 3ltj_A Alpharep-4; protein eng 94.8 0.24 8.3E-06 39.6 10.2 144 10-169 47-196 (201)
21 2vgl_A Adaptor protein complex 94.5 0.15 5E-06 49.5 9.7 98 10-110 113-214 (621)
22 4hxt_A De novo protein OR329; 94.4 1.6 5.6E-05 35.2 16.1 144 10-174 88-244 (252)
23 1te4_A Conserved protein MTH18 94.4 0.2 7E-06 37.8 8.3 54 51-110 47-100 (131)
24 1ibr_B P95, importin beta-1 su 94.0 0.29 1E-05 43.6 10.0 114 44-173 126-248 (462)
25 2jdq_A Importin alpha-1 subuni 93.9 0.42 1.4E-05 42.6 10.7 94 18-111 30-135 (450)
26 4hxt_A De novo protein OR329; 93.8 0.65 2.2E-05 37.7 10.9 103 9-112 129-241 (252)
27 1u6g_C TIP120 protein, CAND1; 93.7 1.6 5.4E-05 44.9 15.9 152 6-171 5-163 (1230)
28 3tpo_A Importin subunit alpha- 93.6 0.72 2.5E-05 43.1 12.2 95 16-110 84-189 (529)
29 1w63_A Adapter-related protein 93.4 0.14 4.7E-06 49.4 6.9 98 11-111 110-207 (618)
30 1oyz_A Hypothetical protein YI 93.3 0.57 1.9E-05 39.5 10.1 106 6-118 88-197 (280)
31 3ul1_B Importin subunit alpha- 93.3 0.91 3.1E-05 42.3 12.3 95 16-110 65-170 (510)
32 3tjz_B Coatomer subunit gamma; 93.2 0.7 2.4E-05 42.0 10.9 135 24-166 120-274 (355)
33 2jdq_A Importin alpha-1 subuni 93.2 2.2 7.4E-05 37.8 14.2 143 13-172 239-391 (450)
34 1u6g_C TIP120 protein, CAND1; 93.1 5.1 0.00018 41.1 18.6 164 7-172 85-285 (1230)
35 4db6_A Armadillo repeat protei 93.1 1.2 4E-05 35.5 11.2 100 10-110 98-207 (210)
36 2bpt_A Importin beta-1 subunit 92.7 2.3 7.7E-05 41.2 14.6 68 43-110 131-208 (861)
37 2bpt_A Importin beta-1 subunit 92.6 4.5 0.00015 39.1 16.6 151 7-172 368-530 (861)
38 3tjz_B Coatomer subunit gamma; 92.5 2.4 8.3E-05 38.4 13.6 99 20-118 38-174 (355)
39 1ibr_B P95, importin beta-1 su 92.4 2.9 9.9E-05 37.0 13.9 146 9-172 129-289 (462)
40 4db8_A Armadillo-repeat protei 92.3 0.79 2.7E-05 37.6 9.4 92 18-110 148-249 (252)
41 4db8_A Armadillo-repeat protei 92.3 0.98 3.4E-05 37.0 9.9 139 10-168 98-248 (252)
42 1wa5_B Importin alpha subunit; 91.9 4.4 0.00015 37.4 14.9 93 19-111 226-327 (530)
43 4b8j_A Importin subunit alpha- 91.7 3.5 0.00012 37.9 14.0 151 11-170 331-495 (528)
44 4b8j_A Importin subunit alpha- 91.7 1.7 5.8E-05 40.0 11.8 97 15-111 81-188 (528)
45 1qgr_A Protein (importin beta 91.5 1.2 3.9E-05 43.4 10.9 113 44-172 126-247 (876)
46 1xqr_A HSPBP1 protein; armadil 90.7 7.9 0.00027 33.7 14.7 150 22-172 54-239 (296)
47 1wa5_B Importin alpha subunit; 90.4 2.1 7.3E-05 39.5 11.2 95 17-111 96-201 (530)
48 1qgr_A Protein (importin beta 89.9 2.7 9.2E-05 40.7 11.8 103 8-111 366-478 (876)
49 1xqr_A HSPBP1 protein; armadil 89.4 2.3 7.8E-05 37.3 10.0 94 20-113 137-239 (296)
50 3ul1_B Importin subunit alpha- 88.3 3 0.0001 38.7 10.5 139 20-170 328-477 (510)
51 1te4_A Conserved protein MTH18 87.8 0.79 2.7E-05 34.4 5.1 61 44-111 10-70 (131)
52 1w63_A Adapter-related protein 87.6 7.9 0.00027 37.0 13.3 92 16-109 42-133 (618)
53 3u0r_A Apoptosis inhibitor 5; 86.5 4 0.00014 38.7 10.1 73 38-112 57-129 (507)
54 2x19_B Importin-13; nuclear tr 86.0 28 0.00096 34.4 16.7 141 4-170 21-174 (963)
55 4ady_A RPN2, 26S proteasome re 83.5 6.5 0.00022 40.3 10.7 97 7-110 576-674 (963)
56 4ffb_C Protein STU2; tubulin f 82.6 9.8 0.00034 32.1 10.2 70 45-114 138-214 (278)
57 2of3_A ZYG-9; multifunctional 81.9 3.9 0.00013 35.6 7.4 34 82-115 203-239 (266)
58 1xm9_A Plakophilin 1; armadill 80.9 16 0.00054 33.3 11.7 100 7-110 5-114 (457)
59 2db0_A 253AA long hypothetical 80.7 18 0.00061 30.6 10.6 88 19-108 155-242 (253)
60 3tpo_A Importin subunit alpha- 80.2 7.8 0.00027 36.0 9.4 94 18-111 303-405 (529)
61 3b2a_A TON_1937, putative unch 78.2 10 0.00034 33.0 8.5 73 5-77 147-220 (265)
62 2z6g_A B-catenin; FULL-length, 73.6 19 0.00066 35.4 10.5 69 42-110 146-220 (780)
63 2z6h_A Catenin beta-1, beta-ca 73.6 22 0.00076 33.6 10.7 93 19-111 25-126 (644)
64 3l9t_A Putative uncharacterize 71.4 28 0.00096 29.8 9.6 93 6-107 69-163 (240)
65 3m1i_C Exportin-1; heat repeat 69.9 96 0.0033 31.2 15.2 104 6-115 15-132 (1049)
66 1jdh_A Beta-catenin; beta-cate 69.0 45 0.0015 29.9 11.3 91 20-110 239-337 (529)
67 2vgl_A Adaptor protein complex 69.0 41 0.0014 32.1 11.4 99 8-109 329-430 (621)
68 4atg_A TAF6; transcription, TF 68.5 49 0.0017 27.3 11.3 93 20-115 58-165 (196)
69 2z6g_A B-catenin; FULL-length, 66.2 24 0.00081 34.7 9.3 93 19-111 161-262 (780)
70 1jdh_A Beta-catenin; beta-cate 65.0 44 0.0015 29.9 10.3 88 20-107 72-167 (529)
71 2z6h_A Catenin beta-1, beta-ca 64.7 37 0.0013 32.1 10.1 89 20-108 69-165 (644)
72 2x1g_F Cadmus; transport prote 59.3 47 0.0016 32.9 10.1 191 6-245 6-216 (971)
73 1wa5_C Importin alpha RE-expor 58.5 1.5E+02 0.0051 29.4 14.5 102 5-113 3-115 (960)
74 3opb_A SWI5-dependent HO expre 57.6 1.4E+02 0.0047 29.8 12.9 132 23-173 574-730 (778)
75 3hm6_X Plexin-B1; structural g 55.2 1.4E+02 0.0048 29.1 12.1 106 27-148 110-229 (644)
76 3tt9_A Plakophilin-2; cell adh 52.8 40 0.0014 28.3 7.3 63 48-110 10-79 (233)
77 3l9t_A Putative uncharacterize 51.7 11 0.00038 32.4 3.5 96 8-109 90-204 (240)
78 3tt9_A Plakophilin-2; cell adh 51.3 1.1E+02 0.0036 25.6 9.7 94 7-104 11-116 (233)
79 3nmw_A APC variant protein; AR 49.3 34 0.0012 30.3 6.6 66 46-111 263-333 (354)
80 3l6x_A Catenin delta-1; cateni 46.2 42 0.0014 32.2 7.0 71 40-110 42-117 (584)
81 1xm9_A Plakophilin 1; armadill 45.7 1.7E+02 0.0058 26.3 11.1 47 49-95 334-383 (457)
82 4ffb_C Protein STU2; tubulin f 45.4 1.3E+02 0.0044 24.9 17.1 153 15-170 16-211 (278)
83 3b2a_A TON_1937, putative unch 44.8 1.5E+02 0.0052 25.5 10.6 23 16-38 83-105 (265)
84 2of3_A ZYG-9; multifunctional 44.6 1.2E+02 0.004 26.1 9.0 75 4-79 163-240 (266)
85 3now_A UNC-45 protein, SD10334 43.4 79 0.0027 31.6 8.7 66 46-111 665-736 (810)
86 3nmz_A APC variant protein; pr 42.9 49 0.0017 30.6 6.7 66 45-110 378-448 (458)
87 3qml_C Protein SLS1, nucleotid 41.4 40 0.0014 30.0 5.6 80 33-112 105-189 (315)
88 2x1g_F Cadmus; transport prote 40.0 2.8E+02 0.0096 27.2 15.8 110 42-172 501-616 (971)
89 3now_A UNC-45 protein, SD10334 39.8 2.3E+02 0.0077 28.3 11.4 68 45-112 376-450 (810)
90 3l6x_A Catenin delta-1; cateni 39.0 2.6E+02 0.009 26.6 13.1 93 18-110 365-474 (584)
91 3m1i_C Exportin-1; heat repeat 36.9 70 0.0024 32.2 7.3 69 43-111 492-568 (1049)
92 2h80_A STAR-related lipid tran 36.1 15 0.00052 26.0 1.6 26 191-216 46-71 (81)
93 3ig3_A Plxna3 protein; plexin 32.5 3.5E+02 0.012 26.2 12.4 107 26-148 83-205 (627)
94 4hat_C Exportin-1; heat repeat 30.1 55 0.0019 33.5 5.2 68 43-110 492-567 (1023)
95 2dky_A RHO-GTPase-activating p 29.1 12 0.0004 27.1 0.0 26 191-216 48-73 (91)
96 3nmw_A APC variant protein; AR 28.9 1.1E+02 0.0039 26.9 6.6 52 59-110 97-154 (354)
97 4ady_A RPN2, 26S proteasome re 28.5 4.8E+02 0.016 26.6 11.7 103 2-111 466-570 (963)
98 2rg8_A Programmed cell death p 28.4 2.1E+02 0.0073 22.4 7.7 62 8-75 12-73 (165)
99 2x19_B Importin-13; nuclear tr 25.4 4.8E+02 0.016 25.4 11.1 64 42-108 486-552 (963)
100 2b6c_A Hypothetical protein EF 25.0 1.3E+02 0.0046 24.4 5.9 33 32-68 114-146 (220)
101 3grl_A General vesicular trans 24.6 4.9E+02 0.017 25.3 15.7 144 4-166 18-190 (651)
102 3nmz_A APC variant protein; pr 23.2 3.1E+02 0.011 25.1 8.6 133 20-169 299-448 (458)
103 3ibv_A Exportin-T; karyopherin 22.9 99 0.0034 31.4 5.5 73 41-114 489-568 (980)
104 4gmo_A Putative uncharacterize 22.0 1.2E+02 0.004 29.2 5.6 64 46-110 35-103 (684)
105 2jak_A Serine/threonine-protei 21.9 3.6E+02 0.012 24.5 8.6 82 27-108 277-363 (392)
106 2npp_B PP2A, B subunit, serine 21.6 4.7E+02 0.016 24.1 9.4 79 27-107 265-350 (449)
107 3qml_C Protein SLS1, nucleotid 20.4 4.3E+02 0.015 23.3 8.5 32 210-243 232-264 (315)
108 1t06_A Hypothetical protein; s 20.2 1.6E+02 0.0056 24.3 5.6 52 42-93 147-198 (235)
No 1
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=100.00 E-value=9.8e-68 Score=469.07 Aligned_cols=233 Identities=18% Similarity=0.261 Sum_probs=215.8
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhh
Q 025778 3 AVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (248)
Q Consensus 3 ~s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~ 82 (248)
+++++|+++|||+|+.++| ++|+++|+||||+++++||+++|+|||++++|+++++.+||||+++||||+|++++++++
T Consensus 11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~ 89 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP 89 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988 699999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCC-ccchHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 025778 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLL 161 (248)
Q Consensus 83 ~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~-~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~ 161 (248)
+++++|.+|++|+|++|+|++|+|++++||.+| +|++.++ ++++++++|++|+++|++|++ +|+++|+|||++
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l-----~~i~~~~~~~~~~~~~W~~m~~lK~~Il~-~~~s~n~gvkl~ 163 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGL-----QYLCSLMEPGDSAEQAWNILSLIKAQILD-MIDNENDGIRTN 163 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH-----HHHTTSSSCCHHHHHHHHHHHHHHHHHHH-GGGSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCcchHHHHHHHHHHHHHHHHH-HHccCCcchHHH
Confidence 999999999999999999999999999999999 6666665 566789999999999999999 799999999999
Q ss_pred HHHHHhHHHhhccCCCCCcccccccCCcccccccccCCCCCCCChhhHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 025778 162 ALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVNC 241 (248)
Q Consensus 162 aiKF~e~vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~ss~~~~l~~a~lns 241 (248)
|+||+|+||++||++.++ .++++ +||||++||+|||+|++++||+||+++||+||+++.++. ++.++++|++||
T Consensus 164 ~iKF~e~vIl~qT~~~~~--~~~~~---~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~-iss~~l~a~lns 237 (257)
T 3gs3_A 164 AIKFLEGVVVLQSFADED--SLKRD---GDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTH-ISSVNLIACTSS 237 (257)
T ss_dssp HHHHHHHHHHHTSCCCTT--SCCCT---TCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcc--cCCCC---CCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCc-cchHHHHHHHHH
Confidence 999999999999976544 34444 499999999999999999999999999999999977553 345679999999
Q ss_pred HHHHhhC
Q 025778 242 LNSLCRE 248 (248)
Q Consensus 242 L~~iakq 248 (248)
|++|||+
T Consensus 238 L~~Iak~ 244 (257)
T 3gs3_A 238 LCTIAKM 244 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999995
No 2
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=100.00 E-value=1.2e-66 Score=484.28 Aligned_cols=236 Identities=21% Similarity=0.329 Sum_probs=220.5
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhh
Q 025778 3 AVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (248)
Q Consensus 3 ~s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~ 82 (248)
++++||+++|||+|+.+++ ++|+++|+|+||+++++||+++++|||++++|++|++.+||||+++||||+|++++|+++
T Consensus 21 ~~~~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~ 99 (386)
T 3o2t_A 21 MTTSERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL 99 (386)
T ss_dssp CCHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ccHHHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999876 499999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCC-ccchHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 025778 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLL 161 (248)
Q Consensus 83 ~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~-~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~ 161 (248)
+++++|.+||+|+|++|+|++|+|++++||.+| ||+++++ .+++++++|++|+++|++|++ +|+++|+|||++
T Consensus 100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f-----~~i~~~~~~~~~~e~~W~~m~~lK~~Il~-~~ds~n~GVrl~ 173 (386)
T 3o2t_A 100 KLIANLNMLLRDENVNVVKKAILTMTQLYKVAL-----QWMVKSRVISELQEACWDMVSAMAGDIIL-LLDSDNDGIRTH 173 (386)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-----HHHHHC-CCCHHHHHHHHHHHHHHHHHHH-GGGCSSHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-----HHHhcCCCcchhHHHHHHHHHHHHHHHHH-HhccCCcchHHH
Confidence 999999999999999999999999999999999 7877776 355789999999999999999 899999999999
Q ss_pred HHHHHhHHHhhccCCCCCcccccccCCcccccccccCCCCCCCChhhHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 025778 162 ALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVNC 241 (248)
Q Consensus 162 aiKF~e~vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~ss~~~~l~~a~lns 241 (248)
|+||+|+||++||++++|++.|++.+ +||||++||+|||+|++++||+||+++||+||++++++.+ ++++++|++||
T Consensus 174 aiKFle~VIl~qS~~~~d~~~p~~~~--~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~i-ss~~l~a~lns 250 (386)
T 3o2t_A 174 AIKFVEGLIVTLSPRMADSEIPRRQE--HDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAI-SSINLTTALGS 250 (386)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCGGGT--TSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--C-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccccccC--CCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccccc-ccHHHHHHHHH
Confidence 99999999999999988888777654 6999999999999999999999999999999999997644 45889999999
Q ss_pred HHHHhhC
Q 025778 242 LNSLCRE 248 (248)
Q Consensus 242 L~~iakq 248 (248)
|++|||+
T Consensus 251 La~Iak~ 257 (386)
T 3o2t_A 251 LANIARQ 257 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
No 3
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.097 Score=44.80 Aligned_cols=139 Identities=9% Similarity=0.046 Sum_probs=96.6
Q ss_pred hhcCCChHHHHHHHHHHHH-HHhcCCCchH------HhhhHHHHhcc-CCchhHHHHHHHHHHHHHhhh----h-h-hhh
Q 025778 16 ANNHGDLAVKLSSLKQVRG-ILSSADPSLA------AELFPYLVELQ-SSPESLVRKSLIETIEDIGLK----A-M-EHS 81 (248)
Q Consensus 16 A~~~~d~~~k~~~L~q~re-lll~~~p~ll------~~~l~~il~~~-~~~~~~vrk~~~~fiee~~~~----~-~-e~~ 81 (248)
...+++-.++.+.|..+.. ++. +.|.+. .++++.+...- .|.+..||.-.+..++.++.. . . .+.
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~-~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLS-QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGG-GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHh-cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 3455777788899999999 774 444332 46677666554 688999998888877777642 2 2 577
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 025778 82 SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLL 161 (248)
Q Consensus 82 ~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~ 161 (248)
..+++.+...+.|..+.|...+..++-.++..+= . .. .....+.+++ .++. .+++.|..+|..
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-----~-~~---~~~~l~~ll~-------~l~~-~l~~k~~~vk~~ 165 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-----P-LA---SSGRNEDMLK-------DILE-HMKHKTPQIRME 165 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-----T-TC---TTCTTHHHHH-------HHHH-HTTCSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-----c-cc---cCCcHHHHHH-------HHHH-HHcCCChHHHHH
Confidence 8899999999999998888777776666665320 0 00 0011344444 4455 678889999999
Q ss_pred HHHHHhHHHhh
Q 025778 162 ALKFLETHVLL 172 (248)
Q Consensus 162 aiKF~e~vIl~ 172 (248)
+++|+.+++-.
T Consensus 166 al~~l~~~~~~ 176 (249)
T 2qk1_A 166 CTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.75 E-value=0.016 Score=55.48 Aligned_cols=91 Identities=10% Similarity=0.088 Sum_probs=71.7
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhh--hHHHHHHHhhccC
Q 025778 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS--ILMPVLLAFLRDG 95 (248)
Q Consensus 18 ~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~--~~l~~L~~lL~d~ 95 (248)
..++...+...| +-+.--..|++.+.++|.+...-.|+++.|||-.+--+..++..+++.+. ..++.|..+|.|+
T Consensus 96 ~~~n~~ir~~AL---~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~ 172 (591)
T 2vgl_B 96 EDPNPLIRALAV---RTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS 172 (591)
T ss_dssp SSSSHHHHHHHH---HHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS
T ss_pred CCCCHHHHHHHH---HHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC
Confidence 345533343333 44443357888888999999888899999999999999999998888776 5889999999999
Q ss_pred ChHHHHHHHHhhhhhh
Q 025778 96 DSGVAGKSIVCGTNFF 111 (248)
Q Consensus 96 ~~~V~K~aI~~~t~lY 111 (248)
|+.|...|+.+...+.
T Consensus 173 d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 173 NPMVVANAVAALSEIS 188 (591)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHH
Confidence 9999999988877654
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.59 E-value=0.19 Score=41.95 Aligned_cols=176 Identities=12% Similarity=0.107 Sum_probs=114.6
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcC-C--CchHHhhhHHHHhccC-CchhHHHHHHHHHHHHHhhhh----hhhhhhHHHH
Q 025778 16 ANNHGDLAVKLSSLKQVRGILSSA-D--PSLAAELFPYLVELQS-SPESLVRKSLIETIEDIGLKA----MEHSSILMPV 87 (248)
Q Consensus 16 A~~~~d~~~k~~~L~q~relll~~-~--p~ll~~~l~~il~~~~-~~~~~vrk~~~~fiee~~~~~----~e~~~~~l~~ 87 (248)
.....|-.++...+..+..++... . ..-+.++++.+...-. |++..||.-.+..++..+..- ..+...+++.
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ 102 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPS 102 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334577888999999999988641 1 2234677777776653 899999999999998887532 3567889999
Q ss_pred HHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHh
Q 025778 88 LLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (248)
Q Consensus 88 L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e 167 (248)
|...+.|.++.|...+..+...++.. . ..+ .+=..++. .+++.|..+|..++.|+.
T Consensus 103 ll~~l~d~~~~vr~~a~~aL~~~~~~------------~----~~~-------~ll~~l~~-~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 103 LLEKFKEKKPNVVTALREAIDAIYAS------------T----SLE-------AQQESIVE-SLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTT------------S----CHH-------HHHHHHHH-HTTCSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHc------------C----CHH-------HHHHHHHH-HHcCCChHHHHHHHHHHH
Confidence 99999999998887777776655431 0 112 23344556 667889999999999998
Q ss_pred HHHhhccCCCCCcccccccCCcccccccccCCCCCCC--ChhhHHHHHHHHHHHHHHHhh
Q 025778 168 THVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFL--DPVSLTSEANRMLGTLMDLLQ 225 (248)
Q Consensus 168 ~vIl~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l--~~~~Le~Ea~~lL~~LL~~l~ 225 (248)
.++-.+.+..... ..+. ..+|.--+.+ .....+..|...+..+...+.
T Consensus 159 ~~l~~~~~~~~~~---------~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 159 RALTRTQPTALNK---------KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHTTCCGGGCCH---------HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccH---------HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 8765543210000 0011 1223333333 234566677777766666665
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.40 E-value=0.088 Score=43.98 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=77.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh------hhhh
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA------MEHS 81 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~------~e~~ 81 (248)
.++..|-+....+....+-.....+.+++..-. ++.++|.++..-.++++.+|..++++|..+.... ..++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 344455555444554455555666666653222 4778888887656778899999999999865432 2456
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHH
Q 025778 82 SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLE 116 (248)
Q Consensus 82 ~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~ 116 (248)
+.+++.|..++.|.++.|-+.++.|.+.++..+=.
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 89999999999999999999999999999987753
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.38 E-value=0.15 Score=41.16 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPV 87 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~ 87 (248)
+.+..|-+....+|...+...+..+.++ .++ +.+|.+++.-.+++..+|...+..+.+.+. ...++.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~---~~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~ 85 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKI---GDE----RAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP 85 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH---CCG----GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCc----cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHH
Confidence 3344444555556765666555555543 343 555666666567888999999988887763 345677
Q ss_pred HHHhhccCChHHHHHHHHhhhhh
Q 025778 88 LLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 88 L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
|..+|.|+++.|...++.+.+.+
T Consensus 86 L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 86 LIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh
Confidence 77788899999888888887754
No 8
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.27 E-value=0.18 Score=48.20 Aligned_cols=137 Identities=16% Similarity=0.119 Sum_probs=84.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhh-------
Q 025778 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI------- 83 (248)
Q Consensus 11 ~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~------- 83 (248)
+-|.+....+|..+|.+.++++--+...+++ .+.+++.++.+-.+++.++||-+--++...+..++|...-
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~k 93 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVK 93 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHH
Confidence 3345555567777899988888776654433 2556777888877888999998877776655544444333
Q ss_pred ----------------------------HHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHH
Q 025778 84 ----------------------------LMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (248)
Q Consensus 84 ----------------------------~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~ 135 (248)
+++.+..++.|.+|.|-|.|+.|...+|+.. ++ .
T Consensus 94 dL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--------------p~----~ 155 (591)
T 2vgl_B 94 DCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--------------AQ----M 155 (591)
T ss_dssp GSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--------------CC----C
T ss_pred HcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--------------hh----h
Confidence 3444555555555555555555555555410 00 1
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHH
Q 025778 136 WTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (248)
Q Consensus 136 W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (248)
|.. ..+-..+.. ++++.+.+|+.+|+..+..+
T Consensus 156 ~~~-~~~~~~l~~-lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 156 VED-QGFLDSLRD-LIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp HHH-HHHHHHHHH-TTSCSCHHHHHHHHHHHHHH
T ss_pred ccc-ccHHHHHHH-HhCCCChhHHHHHHHHHHHH
Confidence 110 123355556 66777889999999988774
No 9
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.22 E-value=0.28 Score=41.36 Aligned_cols=123 Identities=12% Similarity=-0.019 Sum_probs=72.4
Q ss_pred HHhhhHHHHh-ccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHH-HHHHHhhH
Q 025778 44 AAELFPYLVE-LQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR-VLEEITMQ 121 (248)
Q Consensus 44 l~~~l~~il~-~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~-~l~~~a~~ 121 (248)
.+.+++-+.. +..|++..||...+.-+...+..++.....+++.|..++.|+++.|...++.+.+.+-.. ++..+. +
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~-~ 166 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLI-N 166 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHH-H
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHH-H
Confidence 3444443321 235778888998888888888776666677888888889999999988888888765332 121111 2
Q ss_pred hhhcCCccchHHHHHHHHHHHH-------HHHHHHhccCCCcchHHHHHHHHhHH
Q 025778 122 FRWHGKVERWLEELWTWMVRFK-------DAVFAIALEPGLVGTKLLALKFLETH 169 (248)
Q Consensus 122 ~~~~~~~~~~~~~~W~~m~~lK-------~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (248)
.+ ..+...--......+..+. ..++. ++.+.+..||..|+..+...
T Consensus 167 ~l-~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~-~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 167 LL-KDPNGDVRNWAAFAININKYDNSDIRDCFVE-MLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HH-TCSSHHHHHHHHHHHHHHTCCCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHT
T ss_pred HH-cCCCHHHHHHHHHHHHhhccCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHh
Confidence 22 1110000122223333332 23344 45667788998888776543
No 10
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.03 Score=47.43 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=83.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 025778 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVL 88 (248)
Q Consensus 9 ~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L 88 (248)
++..|-+--..+|...|+..=..+.|+. ..+|+++++++.++.....+++..-|--..+||+..+-.++++..--+|.|
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIa-ranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL 186 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIA-KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRI 186 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHH
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHH-HhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHH
Confidence 3444444445588778887777777766 589999999999999998899988888899999999999999999999999
Q ss_pred HHhhccCChHHHHHHHHhhhhh
Q 025778 89 LAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 89 ~~lL~d~~~~V~K~aI~~~t~l 110 (248)
..||.|.|..|--.++.+.+.+
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHH
Confidence 9999999998888888776654
No 11
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.91 E-value=0.035 Score=52.72 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=65.7
Q ss_pred CchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhH-----HHHHHHhhHhhhcCCccch
Q 025778 57 SPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC-----RVLEEITMQFRWHGKVERW 131 (248)
Q Consensus 57 ~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~-----~~l~~~a~~~~~~~~~~~~ 131 (248)
..+...++..++||-..++.-|++..++++++..|.+|+|+.|-+.||-..-.+.+ .+-+.++ |.+.......-
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~-QlLqtdd~~E~ 117 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILT-QLLQTDDSAEF 117 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHH-HHTTCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHH-HHHhccchHHH
Confidence 44566777777777777777777777777777777777777777777766655543 2222222 33322111111
Q ss_pred HHHHHHHHHHHHHH-------HHHHhccCCCcchHHHHHHHHhHHHhh
Q 025778 132 LEELWTWMVRFKDA-------VFAIALEPGLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 132 ~~~~W~~m~~lK~~-------Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (248)
..-.|..|+-+|.+ ++. -+.++.+.+|.-++||+..-+..
T Consensus 118 ~~V~~sL~sllk~Dpk~tl~~lf~-~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 118 NLVNNALLSIFKMDAKGTLGGLFS-QILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcChHHHHHHHHH-HHcccchHHHHHHHHHHHHHHhh
Confidence 22234444444432 112 12346789999999999655544
No 12
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.24 Score=42.34 Aligned_cols=72 Identities=6% Similarity=0.057 Sum_probs=60.0
Q ss_pred HHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhh-------hhh-hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHH
Q 025778 44 AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM-------EHS-SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 44 l~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~-------e~~-~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l 115 (248)
++.+++.+++.-.++...+|.....||..++.... .++ +.+++.|..++.|.++.|-+.++.|++.+|+.+=
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 67888888876555578999999999998875432 356 8999999999999999999999999999998664
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.65 E-value=0.15 Score=50.40 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc--------hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh----
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPS--------LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA---- 77 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~--------ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~---- 77 (248)
+..|-+....+|...+-..+..+..+..+-.+. .++.++|.++++-.+++.+||...+..+...+...
T Consensus 130 l~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~ 209 (852)
T 4fdd_A 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209 (852)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH
Confidence 333444444455555655665555555322111 25667777777656777888888777776554322
Q ss_pred hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcc
Q 025778 78 MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (248)
Q Consensus 78 ~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~G 157 (248)
......+++.|..++.|+++.|.+.+..|...+....-+.+ .+..+ .+-..++. ...+.++.
T Consensus 210 ~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~----------~~~l~-------~l~~~l~~-~~~~~~~~ 271 (852)
T 4fdd_A 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL----------LPHMH-------NIVEYMLQ-RTQDQDEN 271 (852)
T ss_dssp HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH----------GGGHH-------HHHHHHHH-HHTCSSHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH----------HHHHH-------HHHHHHHH-HccCCcHH
Confidence 23345677777778888888888888888776655332111 11222 23333344 33556788
Q ss_pred hHHHHHHHHhHH
Q 025778 158 TKLLALKFLETH 169 (248)
Q Consensus 158 vr~~aiKF~e~v 169 (248)
||..|+.|+..+
T Consensus 272 vr~~a~e~l~~l 283 (852)
T 4fdd_A 272 VALEACEFWLTL 283 (852)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.62 E-value=0.66 Score=37.02 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH-----HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh---
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--- 81 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll-----~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~--- 81 (248)
+..|-+....++...+...+..+.++.. .++... .+.+|.++.+-.+++..+|+..+..|..++...++..
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 56 LPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc-CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3334444444565666677777777764 333211 3466777777667778888888888888876443322
Q ss_pred --hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHH-HHHHHHHHHHHHHHHHhccCCCcch
Q 025778 82 --SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLE-ELWTWMVRFKDAVFAIALEPGLVGT 158 (248)
Q Consensus 82 --~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~-~~W~~m~~lK~~Il~~~~d~~n~Gv 158 (248)
...++.|..++.++++.|.+.++.+..++-.. ++... ...+ ...-..+.. ++.+++..+
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~---------------~~~~~~~~~~--~g~i~~L~~-ll~~~~~~v 196 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASG---------------GNEQKQAVKE--AGALEKLEQ-LQSHENEKI 196 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---------------CHHHHHHHHH--TTHHHHHHH-GGGCSCHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---------------CcHHHHHHHH--CCCHHHHHH-HHhCCCHHH
Confidence 45678888888888888888877776665320 00000 0000 012234445 567788899
Q ss_pred HHHHHHHHhHH
Q 025778 159 KLLALKFLETH 169 (248)
Q Consensus 159 r~~aiKF~e~v 169 (248)
|-.|...+..+
T Consensus 197 ~~~a~~aL~~l 207 (210)
T 4db6_A 197 QKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.57 E-value=0.26 Score=45.44 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh--hhhhhhH
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--MEHSSIL 84 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~--~e~~~~~ 84 (248)
+.++.++.+.....+...|.....-...+..+-.+...++++|.+.++..|++..||+..++.+..++... ......+
T Consensus 125 ~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l 204 (588)
T 1b3u_A 125 AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI 204 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHH
Confidence 34555665555445555555555545544433334455677777767767778888888888888776532 3345677
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
++.+..++.|+++.|-+.++.+...+.
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 777777788888877777777766543
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.53 E-value=0.23 Score=45.85 Aligned_cols=92 Identities=12% Similarity=0.135 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhh--hhhhhhhHHHHHHHhhccCC
Q 025778 20 GDLAVKLSSLKQVRGILSSADPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK--AMEHSSILMPVLLAFLRDGD 96 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p~-ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~--~~e~~~~~l~~L~~lL~d~~ 96 (248)
++...+...+.....++-.-.+. .++.++|.+..+..+++..+|.-.++.+..++.. ...+...+++.|..+++|++
T Consensus 453 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~ 532 (588)
T 1b3u_A 453 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV 532 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSC
T ss_pred CcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCC
Confidence 33334444444444443221222 2355555555555555556666555555554432 12234555555555666666
Q ss_pred hHHHHHHHHhhhhhh
Q 025778 97 SGVAGKSIVCGTNFF 111 (248)
Q Consensus 97 ~~V~K~aI~~~t~lY 111 (248)
+.|...++.+.+.++
T Consensus 533 ~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 533 ANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred chHHHHHHHHHHHHH
Confidence 666555555555544
No 17
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.43 E-value=0.4 Score=38.59 Aligned_cols=142 Identities=17% Similarity=0.095 Sum_probs=82.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~ 89 (248)
+..|-++...+|...+...+..+.++ .++ +.+|.+++.-.|++..+|.+.+..+...+. ...++.|.
T Consensus 52 ~~~L~~~l~~~~~~vr~~a~~aL~~~---~~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~ 118 (211)
T 3ltm_A 52 VEPLIKALKDEDAWVRRAAADALGQI---GDE----RAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLI 118 (211)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH---CCG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhh---CCH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHH
Confidence 33444444455655565555555443 333 455666666578889999999999987764 24567788
Q ss_pred HhhccCChHHHHHHHHhhhhhhHH-HHHHHhhHhhhcCCccchHHHHHHHHHHHHH-----HHHHHhccCCCcchHHHHH
Q 025778 90 AFLRDGDSGVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEELWTWMVRFKD-----AVFAIALEPGLVGTKLLAL 163 (248)
Q Consensus 90 ~lL~d~~~~V~K~aI~~~t~lY~~-~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~-----~Il~~~~d~~n~Gvr~~ai 163 (248)
.++.|+++.|...++.+.+.+-.. ++..+. +.+ ..+...--...-..+..+.+ .+.. ++++++..||..|+
T Consensus 119 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~ 195 (211)
T 3ltm_A 119 KALKDEDWFVRIAAAFALGEIGDERAVEPLI-KAL-KDEDGWVRQSAADALGEIGGERVRAAMEK-LAETGTGFARKVAV 195 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHCSHHHHHHHHH-HHHHCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhCchhHHHHHHH-HHhCCCHHHHHHHH
Confidence 889999999999999988765321 111111 222 21111111233333333322 3333 44566777888887
Q ss_pred HHHh
Q 025778 164 KFLE 167 (248)
Q Consensus 164 KF~e 167 (248)
.-+.
T Consensus 196 ~aL~ 199 (211)
T 3ltm_A 196 NYLE 199 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 18
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.07 E-value=0.19 Score=49.73 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhh-----
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH----- 80 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~----- 80 (248)
++.+-+.+=++...++...+...-.-+.+++....|.-.++++|.+++.-.+++..+|.-....+..+|...++.
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~ 167 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 167 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhh
Confidence 344444444444444443444444444555544455666788888887766777889998888888888655433
Q ss_pred ----hhhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 81 ----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 81 ----~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
...+++.+..++.|+++.|.+.++.+.+.+.
T Consensus 168 ~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 168 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT
T ss_pred hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5667888888888999999888888876544
No 19
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.84 E-value=1.2 Score=35.47 Aligned_cols=137 Identities=15% Similarity=0.050 Sum_probs=75.9
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCC
Q 025778 17 NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (248)
Q Consensus 17 ~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~ 96 (248)
...+|...+...+..+.++ .++ +.+|.+++.-.+++..+|...+..+.+.+. +..++.|..+|.|++
T Consensus 23 L~~~~~~vr~~A~~~L~~~---~~~----~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~ 89 (201)
T 3ltj_A 23 LQDDSYYVRRAAAYALGKI---GDE----RAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDED 89 (201)
T ss_dssp TTCSCHHHHHHHHHHHHHH---CCG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSS
T ss_pred hcCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCC
Confidence 3446655665555555543 333 445556555567888899998888887753 245677777888889
Q ss_pred hHHHHHHHHhhhhhhHH-HHHHHhhHhhhcCCccchHHHHHHHHHHHHH-----HHHHHhccCCCcchHHHHHHHHhHH
Q 025778 97 SGVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEELWTWMVRFKD-----AVFAIALEPGLVGTKLLALKFLETH 169 (248)
Q Consensus 97 ~~V~K~aI~~~t~lY~~-~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~-----~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (248)
+.|...++.+.+.+-.. ++..+. +.+ ..+...--...-..+..+.+ .+.. ++.+.+..||..|+.-+..+
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLI-KAL-KDEDWFVRIAAAFALGEIGDERAVEPLIK-ALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHTCGGGHHHHHH-HTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHh
Confidence 98888888887754322 222211 222 11100001222223333321 2334 44555667777777666544
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.77 E-value=0.24 Score=39.60 Aligned_cols=144 Identities=19% Similarity=0.122 Sum_probs=84.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~ 89 (248)
+..|-++...+|...+...+..+.++ .+| +.+|.+++.-.|++..+|.+.+..+...+. ...++.|.
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~---~~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~ 113 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQI---GDE----RAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLI 113 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH---CCG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhh---CCH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHH
Confidence 44444555556665665555555443 344 455556655568888999999998887754 23566777
Q ss_pred HhhccCChHHHHHHHHhhhhhhH-HHHHHHhhHhhhcCCccchHHHHHHHHHHHH-----HHHHHHhccCCCcchHHHHH
Q 025778 90 AFLRDGDSGVAGKSIVCGTNFFC-RVLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLAL 163 (248)
Q Consensus 90 ~lL~d~~~~V~K~aI~~~t~lY~-~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK-----~~Il~~~~d~~n~Gvr~~ai 163 (248)
.++.|+++.|...++.+.+.+-. .++..+. +.+ ..+...--...-..+..+. ..+.. ++++.+..||..|+
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~A~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEIGDERAVEPLI-KAL-KDEDGWVRQSAADALGEIGGERVRAAMEK-LAETGTGFARKVAV 190 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHCSHHHHHHHHH-HHHHCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhCchhHHHHHHH-HHhCCCHHHHHHHH
Confidence 78889999999888888876542 2221111 222 1111111123333333332 23344 45667788999999
Q ss_pred HHHhHH
Q 025778 164 KFLETH 169 (248)
Q Consensus 164 KF~e~v 169 (248)
+.+.++
T Consensus 191 ~aL~~l 196 (201)
T 3ltj_A 191 NYLETH 196 (201)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 877653
No 21
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=94.55 E-value=0.15 Score=49.49 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=75.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhcc--CCchhHHHHHHHHHHHHHhhhhhhhhh--hHH
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ--SSPESLVRKSLIETIEDIGLKAMEHSS--ILM 85 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~--~~~~~~vrk~~~~fiee~~~~~~e~~~--~~l 85 (248)
+..+......++--.+.-.|+..-.+ ..|++++.++|.+...- .|+++.|||-.+--+..+++.+++.+. ..+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i---~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANV---GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHH---CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 33333444455544455555555443 56888899999998876 899999999999999999999999988 899
Q ss_pred HHHHHhhccCChHHHHHHHHhhhhh
Q 025778 86 PVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 86 ~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+.|..+|.|.||.|+-.|+.....+
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHH
Confidence 9999999999999988887765544
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.40 E-value=1.6 Score=35.21 Aligned_cols=144 Identities=18% Similarity=0.065 Sum_probs=95.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH-----HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh---
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--- 81 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll-----~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~--- 81 (248)
+..|-+....++...+...+..+..+.. .++... .+.+|.++++-.+++.++|+..+..+...+...++..
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 166 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 166 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444445666677777777888774 333321 3567888888778888999999999998886443221
Q ss_pred --hhHHHHHHHhhccCChHHHHHHHHhhhhhhH---HHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCc
Q 025778 82 --SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC---RVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (248)
Q Consensus 82 --~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~---~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~ 156 (248)
..+++.|..++.++++.|.+.++.+..++-. ... +.+ .+ ...-..++. ++.+++.
T Consensus 167 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~l------------~~--~~~i~~L~~-ll~~~~~ 226 (252)
T 4hxt_A 167 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI-----KAI------------VD--AGGVEVLQK-LLTSTDS 226 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH-----HHH------------HH--TTHHHHHHH-GGGCSCH
T ss_pred HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH-----HHH------------HH--CCCHHHHHH-HHCCCcH
Confidence 5588889999999999888888777665532 111 000 00 112334555 5677888
Q ss_pred chHHHHHHHHhHHHhhcc
Q 025778 157 GTKLLALKFLETHVLLFT 174 (248)
Q Consensus 157 Gvr~~aiKF~e~vIl~qt 174 (248)
.+|-.|...+..+.-...
T Consensus 227 ~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999988765433
No 23
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.37 E-value=0.2 Score=37.82 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 51 LVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 51 il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+++.-.|++..||.+.+..+..++. ...++.|..+|+|+++.|.+.++.+.+.+
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3333335555566555555544432 22344555555555555555555555544
No 24
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.04 E-value=0.29 Score=43.65 Aligned_cols=114 Identities=18% Similarity=0.087 Sum_probs=72.1
Q ss_pred HHhhhHHHHhccCCc--hhHHHHHHHHHHHHHhhhh-----hhhhhhHHHHHHHhhccC--ChHHHHHHHHhhhhhhHHH
Q 025778 44 AAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRV 114 (248)
Q Consensus 44 l~~~l~~il~~~~~~--~~~vrk~~~~fiee~~~~~-----~e~~~~~l~~L~~lL~d~--~~~V~K~aI~~~t~lY~~~ 114 (248)
.++++|.+++.-.++ +..+|......+..+|... ..+...+++.+..++.|+ ++.|.+.++.|.+++...+
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467777777664455 7789999999999888643 345577888888889988 7888888888887753211
Q ss_pred HHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhhc
Q 025778 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (248)
Q Consensus 115 l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~q 173 (248)
- .....|.....+-..+.. ...+.+..+|..+++.+..++-..
T Consensus 206 ~---------------~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 206 K---------------ANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp H---------------HHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred H---------------HhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 011112211112222233 345666788888888777666543
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=93.89 E-value=0.42 Score=42.62 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=71.1
Q ss_pred cCCChHHHHHHHHHHHHHHh-cCCCc---hHH--hhhHHHHhccCCc-hhHHHHHHHHHHHHHhhhhhhhh-----hhHH
Q 025778 18 NHGDLAVKLSSLKQVRGILS-SADPS---LAA--ELFPYLVELQSSP-ESLVRKSLIETIEDIGLKAMEHS-----SILM 85 (248)
Q Consensus 18 ~~~d~~~k~~~L~q~relll-~~~p~---ll~--~~l~~il~~~~~~-~~~vrk~~~~fiee~~~~~~e~~-----~~~l 85 (248)
.++|...+...+..+++++. +.+|. .+. +++|.++++-.+. +.++|...+..+..++...++.. ..++
T Consensus 30 ~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 109 (450)
T 2jdq_A 30 FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV 109 (450)
T ss_dssp HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence 45677789999999999875 23443 222 6788888764444 78999999999999887443221 5688
Q ss_pred HHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 86 ~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
+.|..+|.++++.|...++.+.+++-
T Consensus 110 ~~L~~lL~~~~~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 110 PIFIELLSSEFEDVQEQAVWALGNIA 135 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999888877654
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.80 E-value=0.65 Score=37.71 Aligned_cols=103 Identities=20% Similarity=0.154 Sum_probs=77.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCch-----HHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh--
Q 025778 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSL-----AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-- 81 (248)
Q Consensus 9 ~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~l-----l~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~-- 81 (248)
++..|-+....++...+...+.-+.++..+ ++.. -.+.+|.++++-.+++.++|+..+..+..++..+++..
T Consensus 129 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 207 (252)
T 4hxt_A 129 GVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA 207 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344555555566767788888888888753 3321 14578888888778889999999999999987554332
Q ss_pred ---hhHHHHHHHhhccCChHHHHHHHHhhhhhhH
Q 025778 82 ---SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 82 ---~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~ 112 (248)
..+++.|..++.++++.|.+.+..+..++..
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 5578899999999999999999998888765
No 27
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.69 E-value=1.6 Score=44.87 Aligned_cols=152 Identities=10% Similarity=0.083 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcC----CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-hhh
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSA----DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEH 80 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~----~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-~e~ 80 (248)
..++..+|.... .+|...+...+.++.+.+... ++...+.+++.+++.-.|++.++|+..+..+..++..- ++.
T Consensus 5 ~~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ 83 (1230)
T ss_dssp CHHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 445667777644 477778888888888876432 33456788888887766899999999998888776543 356
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCC-ccchHHHHHHHHHHHHHHHHHHhcc-CCCcch
Q 025778 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEELWTWMVRFKDAVFAIALE-PGLVGT 158 (248)
Q Consensus 81 ~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~-~~~~~~~~W~~m~~lK~~Il~~~~d-~~n~Gv 158 (248)
...+++.|...+.|+++.|...+..+.+.+....- ... ........|..+. ..++. .++ +.+..+
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~---------~~~~~~~~~~~~~~~ll---p~L~~-~l~~~~~~~~ 150 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP---------PASSGSALAANVCKKIT---GRLTS-AIAKQEDVSV 150 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--------------CCTHHHHHHHHH---HHHHH-HHSCCSCHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC---------CcccccchHHHHHHHHH---HHHHH-HHcCCCchHH
Confidence 67888888888999998886555555554443211 000 0012345666433 34555 344 577889
Q ss_pred HHHHHHHHhHHHh
Q 025778 159 KLLALKFLETHVL 171 (248)
Q Consensus 159 r~~aiKF~e~vIl 171 (248)
|-.|+..+..++-
T Consensus 151 ~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 151 QLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877764
No 28
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.62 E-value=0.72 Score=43.11 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=72.4
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcC-CCc---hH-HhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhhhhh---h--hhH
Q 025778 16 ANNHGDLAVKLSSLKQVRGILSSA-DPS---LA-AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEH---S--SIL 84 (248)
Q Consensus 16 A~~~~d~~~k~~~L~q~relll~~-~p~---ll-~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~~e~---~--~~~ 84 (248)
...+.|...++..+..+|+++-.. +|. ++ .+.+|.++++ ..+.+++++...+..|..++....+. + ..+
T Consensus 84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga 163 (529)
T 3tpo_A 84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 163 (529)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 344588889999999999998532 442 11 4678888877 45667889999999999887644332 2 457
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
++.|..+|.++++.|...|+.+..+|
T Consensus 164 ip~Lv~LL~s~~~~v~e~A~~aL~nL 189 (529)
T 3tpo_A 164 IPAFISLLASPHAHISEQAVWALGNI 189 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999888776
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.37 E-value=0.14 Score=49.39 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=63.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 025778 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (248)
Q Consensus 11 ~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~ 90 (248)
..|......++.-.+...|+..-.+. .|++.+.++|.+..+-.++++.|||-.+--+..++..+++.+...++.+..
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 33333334444334444444444432 455666777777776667778888888887777777777777777777777
Q ss_pred hhccCChHHHHHHHHhhhhhh
Q 025778 91 FLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 91 lL~d~~~~V~K~aI~~~t~lY 111 (248)
+|.|.|+.|+-.|+.+...+.
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHC
T ss_pred HhCCCCHhHHHHHHHHHHHHH
Confidence 888888887776666555443
No 30
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.34 E-value=0.57 Score=39.46 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=74.9
Q ss_pred HHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhH
Q 025778 6 RDQALSLLAA-ANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (248)
Q Consensus 6 ~~~~~~lln~-A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (248)
...++.+|.+ +...+|...+......+.++-. .+|...+.++|.++..-.|++..||...+..+..++. +..
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~-~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------~~~ 160 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------KAT 160 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CC
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------HHH
Confidence 4556777764 4455676677777777777653 4455567788888777778899999999888876543 236
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhhh---hHHHHHHH
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTNF---FCRVLEEI 118 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~l---Y~~~l~~~ 118 (248)
++.|..++.|+++.|...++.+.+.+ -+.++..+
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L 197 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF 197 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 77788888999999988888888877 35555433
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.25 E-value=0.91 Score=42.33 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=72.4
Q ss_pred hhcCCChHHHHHHHHHHHHHHhc-CCCc---hH-HhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhhhhh---h--hhH
Q 025778 16 ANNHGDLAVKLSSLKQVRGILSS-ADPS---LA-AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEH---S--SIL 84 (248)
Q Consensus 16 A~~~~d~~~k~~~L~q~relll~-~~p~---ll-~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~~e~---~--~~~ 84 (248)
...+.|...|++...++|.++.. ++|. ++ .+.+|.++++ ..+.+++++...+..|..++...++. + .-+
T Consensus 65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~Ga 144 (510)
T 3ul1_B 65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 144 (510)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 34558888999999999999853 3442 22 3468888887 45566789998988888887644332 2 347
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
++.|..+|.++++.|...|+.+..+|
T Consensus 145 Ip~Lv~lL~s~~~~v~e~A~~aL~nL 170 (510)
T 3ul1_B 145 IPAFISLLASPHAHISEQAVWALGNI 170 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 88999999999999999999988877
No 32
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.16 E-value=0.7 Score=42.01 Aligned_cols=135 Identities=8% Similarity=0.035 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHH
Q 025778 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKS 103 (248)
Q Consensus 24 ~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~a 103 (248)
.+--.|+..-.+ .+|++++.+.+.+.+.-.|+++.|||-.+=-....+..++|.....++.+..++.|.+|.|+=.+
T Consensus 120 iR~lALRtL~~I---~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~A 196 (355)
T 3tjz_B 120 YRGPAVRALCQI---TDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHA 196 (355)
T ss_dssp HHHHHHHHHHHH---CCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 444444444443 57888888888887777788888888877666677778888888888889999999999888777
Q ss_pred HHhhhhhhH---HHHHHHhhHhhhcCCccchHHHHHHHHHHHH--------------HHHHHH---hccCCCcchHHHHH
Q 025778 104 IVCGTNFFC---RVLEEITMQFRWHGKVERWLEELWTWMVRFK--------------DAVFAI---ALEPGLVGTKLLAL 163 (248)
Q Consensus 104 I~~~t~lY~---~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK--------------~~Il~~---~~d~~n~Gvr~~ai 163 (248)
+.....+.. .++.++..++. .+. ..+.|..+.-++ ..++.+ ++.+.|..|-..|+
T Consensus 197 l~lL~ei~~~d~~a~~kLv~~l~-~~~----l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~ 271 (355)
T 3tjz_B 197 LGLLYHVRKNDRLAVSKMISKFT-RHG----LKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAA 271 (355)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-SSC----CSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHHHHh-cCC----CcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 666665553 45544443322 111 123555555444 233331 44678889999999
Q ss_pred HHH
Q 025778 164 KFL 166 (248)
Q Consensus 164 KF~ 166 (248)
|-+
T Consensus 272 k~I 274 (355)
T 3tjz_B 272 SAI 274 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 866
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=93.16 E-value=2.2 Score=37.84 Aligned_cols=143 Identities=20% Similarity=0.171 Sum_probs=91.4
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hH-HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhh----h-h
Q 025778 13 LAAANNHGDLAVKLSSLKQVRGILSSADPS----LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH----S-S 82 (248)
Q Consensus 13 ln~A~~~~d~~~k~~~L~q~relll~~~p~----ll-~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~----~-~ 82 (248)
|-+....++...+...+..+.++.. .++. ++ .+.+|.++++-.+++..+|+..+..|..++....+. . .
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 317 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA 317 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhh-CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 3333345666667777777777774 3332 12 257777777766778899999999998887533221 2 4
Q ss_pred hHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHH
Q 025778 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLA 162 (248)
Q Consensus 83 ~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~a 162 (248)
.+++.|..+|.++++.|.+.++.+.+++-...- .......++ ..+-..++. ++++++..+|..|
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-------------~~~~~~l~~--~~~i~~L~~-ll~~~~~~v~~~a 381 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGS-------------AEQIKYLVE--LGCIKPLCD-LLTVMDSKIVQVA 381 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC-------------HHHHHHHHH--HTCHHHHHH-GGGSSCHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC-------------HHHHHHHHH--CCCHHHHHH-HhcCCCHHHHHHH
Confidence 678888889999999998888887777643100 000111111 123344555 5567788999999
Q ss_pred HHHHhHHHhh
Q 025778 163 LKFLETHVLL 172 (248)
Q Consensus 163 iKF~e~vIl~ 172 (248)
+..+..+.-.
T Consensus 382 ~~aL~~l~~~ 391 (450)
T 2jdq_A 382 LNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998877653
No 34
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.10 E-value=5.1 Score=41.07 Aligned_cols=164 Identities=10% Similarity=0.089 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc---------hHHhhhHHHHhccC-CchhHHHHHHHHHHHHHhhh
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS---------LAAELFPYLVELQS-SPESLVRKSLIETIEDIGLK 76 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~---------ll~~~l~~il~~~~-~~~~~vrk~~~~fiee~~~~ 76 (248)
+.++..|-++...++...+-.....+.+++..-.+. ..++++|.+++.-. +++..+|....+.+.++|..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 455665555554444334555555556655443333 57888888886644 46788999999999988853
Q ss_pred h----hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhH--------HHHHHHhhHhhhcC---CccchHHHHHHHHHH
Q 025778 77 A----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC--------RVLEEITMQFRWHG---KVERWLEELWTWMVR 141 (248)
Q Consensus 77 ~----~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~--------~~l~~~a~~~~~~~---~~~~~~~~~W~~m~~ 141 (248)
. ..+...+++.|...+.++++.|-++++.|.+.+.. .++..+. +.+... ..-...-++|..+..
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~-~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL-SELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHH-HHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHH
Confidence 2 23568888888888999999999999988876532 1222221 222211 111223455555543
Q ss_pred H------------HHHHHHHhccCCCcchHHHHHHHHhHHHhh
Q 025778 142 F------------KDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 142 l------------K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (248)
. -..++. .+...++.+|-.++.+++.++-.
T Consensus 244 ~~~~~~~~~l~~l~~~ll~-~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 244 QAGHRIGEYLEKIIPLVVK-FCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HSSGGGTTSCTTHHHHHHH-HHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH
Confidence 2 233344 34566789999999998887654
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.07 E-value=1.2 Score=35.50 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=73.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH-----HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh---
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--- 81 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll-----~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~--- 81 (248)
+..|-+....+|...+......+.++.. .++... .+.+|.++++-.+++.++|+..+..|...+...++..
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 176 (210)
T 4db6_A 98 LPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHc-CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3344444455666677778888888775 333321 4578888888777889999999999999987533221
Q ss_pred --hhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 82 --SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 82 --~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
...++.|..++.++++.|.+.|..+..++
T Consensus 177 ~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999998887765
No 36
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.71 E-value=2.3 Score=41.20 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=52.5
Q ss_pred hHHhhhHHHHhccCCc-hhHHHHHHHHHHHHHhhhh-------hhhhhhHHHHHHHhhccC--ChHHHHHHHHhhhhh
Q 025778 43 LAAELFPYLVELQSSP-ESLVRKSLIETIEDIGLKA-------MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNF 110 (248)
Q Consensus 43 ll~~~l~~il~~~~~~-~~~vrk~~~~fiee~~~~~-------~e~~~~~l~~L~~lL~d~--~~~V~K~aI~~~t~l 110 (248)
-.++++|.+++.-.++ +..+|.-....+..+|... ..+...+++.+...+.|+ ++.|.+.++.|..++
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~ 208 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADS 208 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 4578888888776566 7889998888888888632 235677888888888887 788988888887765
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.62 E-value=4.5 Score=39.08 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhh------
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK------ 76 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~------ 76 (248)
+.++..+.+.....+-..|-..+.....++....|. +++.++|.++..-.|++..||...+..+...+..
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 345556666655566556666666666666322222 4567778777777788999999887777766542
Q ss_pred hhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhcc-CC-
Q 025778 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALE-PG- 154 (248)
Q Consensus 77 ~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d-~~- 154 (248)
..++...+++.|...+.|+ +.|...+..+..++....- . .......+.....+..+ +. .++ .+
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~-----~-~~~~~l~~~~~~il~~L-------~~-~l~~~d~ 512 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA-----E-ATPSPIYNFYPALVDGL-------IG-AANRIDN 512 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS-----S-SSSCGGGGGHHHHHHHH-------HH-HHTCSCC
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc-----c-ccchhhHHHHHHHHHHH-------HH-HHhCcCc
Confidence 2467888999999888886 7776666655554432210 0 00011223334444333 33 233 22
Q ss_pred CcchHHHHHHHHhHHHhh
Q 025778 155 LVGTKLLALKFLETHVLL 172 (248)
Q Consensus 155 n~Gvr~~aiKF~e~vIl~ 172 (248)
+..+|..+++.+..++-.
T Consensus 513 ~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 513 EFNARASAFSALTTMVEY 530 (861)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 257888888877776644
No 38
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=92.52 E-value=2.4 Score=38.41 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=73.8
Q ss_pred CChHHHHH-HHHHHHHHHhcCCC--c-hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh--------------------
Q 025778 20 GDLAVKLS-SLKQVRGILSSADP--S-LAAELFPYLVELQSSPESLVRKSLIETIEDIGL-------------------- 75 (248)
Q Consensus 20 ~d~~~k~~-~L~q~relll~~~p--~-ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~-------------------- 75 (248)
+..+.|.. .++++=-+...+++ . ....+++.++.+-..++.++||-+==++++..+
T Consensus 38 ~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N 117 (355)
T 3tjz_B 38 PINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKE 117 (355)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSC
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCc
Confidence 33446654 78888887776654 1 245777878877668889999988777766542
Q ss_pred --------------hhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHH
Q 025778 76 --------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (248)
Q Consensus 76 --------------~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~ 118 (248)
.+++++..+.+.+...+.|.+|.|-|.|+.|+..+|+..-+.+
T Consensus 118 ~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v 174 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV 174 (355)
T ss_dssp HHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 2246667777788888999999999999999999998777554
No 39
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.38 E-value=2.9 Score=37.00 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=88.9
Q ss_pred HHHHHHHhhcCC--ChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCc--hhHHHHHHHHHHHHHhh---hh
Q 025778 9 ALSLLAAANNHG--DLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSP--ESLVRKSLIETIEDIGL---KA 77 (248)
Q Consensus 9 ~~~lln~A~~~~--d~~~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~--~~~vrk~~~~fiee~~~---~~ 77 (248)
++..|-+....+ |...+-..|.-+..+..+-.|. .++.+++.++..-.+. +.+||+..+.-+..... .+
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 334334444344 6667778888888887543343 4456666666554455 68899988776655321 11
Q ss_pred h--h-hhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHH-HHHHHHHHHHHHHHHHhccC
Q 025778 78 M--E-HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLE-ELWTWMVRFKDAVFAIALEP 153 (248)
Q Consensus 78 ~--e-~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~-~~W~~m~~lK~~Il~~~~d~ 153 (248)
. + ....+++.|..++.++++.|.+.++.++..+....- ..+ .+... ..|..+. . .+.+
T Consensus 209 ~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-----~~~-----~~~~~~~l~~~~~-------~-~~~~ 270 (462)
T 1ibr_B 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-----QYM-----ETYMGPALFAITI-------E-AMKS 270 (462)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-----GGC-----TTTTTTTHHHHHH-------H-HHHC
T ss_pred hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHH-------H-HHcC
Confidence 1 1 113356777777888999998888888877665332 111 12233 5566433 2 2345
Q ss_pred CCcchHHHHHHHHhHHHhh
Q 025778 154 GLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 154 ~n~Gvr~~aiKF~e~vIl~ 172 (248)
.++.||..|+.|+..++-.
T Consensus 271 ~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 271 DIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 6788999999998877654
No 40
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.31 E-value=0.79 Score=37.59 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=45.2
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCchH-----HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh-----hhHHHH
Q 025778 18 NHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPV 87 (248)
Q Consensus 18 ~~~d~~~k~~~L~q~relll~~~p~ll-----~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~-----~~~l~~ 87 (248)
..++...+...+..+.++.. .++... .+.+|.++++-.+++..+|+..+..|..++..+++.. ...++.
T Consensus 148 ~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 226 (252)
T 4db8_A 148 SSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 226 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHH
Confidence 33444445555555555553 222111 3445555555444555666666666665554332211 234555
Q ss_pred HHHhhccCChHHHHHHHHhhhhh
Q 025778 88 LLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 88 L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
|..++.++++.|.+.|..+..++
T Consensus 227 L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 227 LEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Confidence 55556666666665555555544
No 41
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.27 E-value=0.98 Score=37.00 Aligned_cols=139 Identities=16% Similarity=0.143 Sum_probs=87.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc---hH-HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh----
Q 025778 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPS---LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS---- 81 (248)
Q Consensus 10 ~~lln~A~~~~d~~~k~~~L~q~relll~~~p~---ll-~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~---- 81 (248)
+..|-+....++...+...+..+.++..+.+.. +. .+.+|.++++-.+++.++|+..+..+..++...++..
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 177 (252)
T 4db8_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 177 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 344444444456666777777777776432211 11 3577888877667788899999999998886443322
Q ss_pred -hhHHHHHHHhhccCChHHHHHHHHhhhhhhH---HHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcc
Q 025778 82 -SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC---RVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (248)
Q Consensus 82 -~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~---~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~G 157 (248)
..+++.|..++.++++.|.+.++.+.+++-. .....+ .+ ...-..++. ++.+++..
T Consensus 178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-----------------~~--~g~i~~L~~-ll~~~~~~ 237 (252)
T 4db8_A 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV-----------------KE--AGALEKLEQ-LQSHENEK 237 (252)
T ss_dssp HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHH-----------------HH--TTHHHHHHT-TTTCSSSH
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHH-----------------HH--CCcHHHHHH-HhCCCCHH
Confidence 5567888889999899888888888777641 111000 00 012233444 55677788
Q ss_pred hHHHHHHHHhH
Q 025778 158 TKLLALKFLET 168 (248)
Q Consensus 158 vr~~aiKF~e~ 168 (248)
+|-.|...+..
T Consensus 238 v~~~A~~~L~~ 248 (252)
T 4db8_A 238 IQKEAQEALEK 248 (252)
T ss_dssp HHHTHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888776643
No 42
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=91.91 E-value=4.4 Score=37.38 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh-----hhHHHHHH
Q 025778 19 HGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLL 89 (248)
Q Consensus 19 ~~d~~~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~-----~~~l~~L~ 89 (248)
.++...+...+..+..+..+.+|. ...+++|.++.+-.+.+.++|...+..|...+...++.. ..+++.|.
T Consensus 226 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 226 SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 356666777777888888654343 346788888888777788999999988888876443222 36678889
Q ss_pred HhhccCChHHHHHHHHhhhhhh
Q 025778 90 AFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 90 ~lL~d~~~~V~K~aI~~~t~lY 111 (248)
.+|.++++.|.+.++.+..++-
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCChhhHHHHHHHHHHHH
Confidence 9999999988888887776653
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=91.73 E-value=3.5 Score=37.87 Aligned_cols=151 Identities=13% Similarity=0.015 Sum_probs=95.4
Q ss_pred HHHHHhhcCC-ChHHHHHHHHHHHHHHhcCCCchH-----HhhhHHHHhccCCchhHHHHHHHHHHHHHhhh-hhhhh--
Q 025778 11 SLLAAANNHG-DLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHS-- 81 (248)
Q Consensus 11 ~lln~A~~~~-d~~~k~~~L~q~relll~~~p~ll-----~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~-~~e~~-- 81 (248)
..|-.....+ +...+......+.++.. .++... .+++|.++.+-.+.+.++|+..+..|..++.. .++..
T Consensus 331 ~~L~~lL~~~~~~~v~~~A~~~L~nl~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (528)
T 4b8j_A 331 PCLLSLLTQNLKKSIKKEACWTISNITA-GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY 409 (528)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3333333344 65667777777777774 333221 36677777765566889999999999888764 33322
Q ss_pred ---hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHH--HHHHHHHHhccCCCc
Q 025778 82 ---SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVR--FKDAVFAIALEPGLV 156 (248)
Q Consensus 82 ---~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~d~~n~ 156 (248)
..+++.|..+|.+.++.|.+.++.+..++.+..-...- .+. .. .......+.. ..+.|.. +..+.|.
T Consensus 410 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~-~~~--~~----~~~~~~~i~~~~~~~~l~~-L~~~~~~ 481 (528)
T 4b8j_A 410 LVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKT-LAA--GD----VNVFSQMIDEAEGLEKIEN-LQSHDNN 481 (528)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHH-HHT--CS----CCHHHHHHHHTTHHHHHHH-GGGCSSH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhh-ccc--cc----ccHHHHHHHHCCcHHHHHH-HHcCCCH
Confidence 45788899999999999999999998888765431110 000 00 0111112211 1334555 5678899
Q ss_pred chHHHHHHHHhHHH
Q 025778 157 GTKLLALKFLETHV 170 (248)
Q Consensus 157 Gvr~~aiKF~e~vI 170 (248)
.|+-.|.+.++++.
T Consensus 482 ~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 482 EIYEKAVKILEAYW 495 (528)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999998753
No 44
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=91.69 E-value=1.7 Score=40.03 Aligned_cols=97 Identities=15% Similarity=0.251 Sum_probs=73.1
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhcCC-Cc----hHHhhhHHHHhccCCch-hHHHHHHHHHHHHHhhhhhhhh-----hh
Q 025778 15 AANNHGDLAVKLSSLKQVRGILSSAD-PS----LAAELFPYLVELQSSPE-SLVRKSLIETIEDIGLKAMEHS-----SI 83 (248)
Q Consensus 15 ~A~~~~d~~~k~~~L~q~relll~~~-p~----ll~~~l~~il~~~~~~~-~~vrk~~~~fiee~~~~~~e~~-----~~ 83 (248)
+....+|...+...+..+++++.... |. .-.+.+|.++++-.+++ .++|...+..|..++...++.. ..
T Consensus 81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 160 (528)
T 4b8j_A 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (528)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 33345677789999999999986443 32 12467888887755555 8999999999998887543322 35
Q ss_pred HHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 84 LMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 84 ~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
+++.|..+|.++++.|...++.+..++-
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999998888774
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.53 E-value=1.2 Score=43.39 Aligned_cols=113 Identities=19% Similarity=0.115 Sum_probs=69.5
Q ss_pred HHhhhHHHHhccCCc--hhHHHHHHHHHHHHHhhhh-----hhhhhhHHHHHHHhhccC--ChHHHHHHHHhhhhhhHHH
Q 025778 44 AAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRV 114 (248)
Q Consensus 44 l~~~l~~il~~~~~~--~~~vrk~~~~fiee~~~~~-----~e~~~~~l~~L~~lL~d~--~~~V~K~aI~~~t~lY~~~ 114 (248)
.++++|.+++...++ +..+|+-....+..+|... ..+...+++.+...+.++ ++.|.+.++.|.+.+...+
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356666666554455 7789999988888887642 355677888888888877 5778888888877665321
Q ss_pred HHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHhh
Q 025778 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 115 l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (248)
- ... . ...|.. .+-..+.. ...+.+..+|..+++++..++-.
T Consensus 206 ~-----~~~-----~---~~~~~~--~il~~l~~-~~~~~~~~vr~~a~~~l~~l~~~ 247 (876)
T 1qgr_A 206 K-----ANF-----D---KESERH--FIMQVVCE-ATQCPDTRVRVAALQNLVKIMSL 247 (876)
T ss_dssp H-----HHH-----T---SHHHHH--HHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHH
T ss_pred H-----HHH-----H---hHHHHH--HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 1 000 0 112211 12222333 33556678888888888776643
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.71 E-value=7.9 Score=33.73 Aligned_cols=150 Identities=12% Similarity=0.006 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCc--hH-HhhhHHHHh-ccCCchhHHHHHHHHHHHHHhhhhhh---hh--hhHHHHHHHhh
Q 025778 22 LAVKLSSLKQVRGILSSADPS--LA-AELFPYLVE-LQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLAFL 92 (248)
Q Consensus 22 ~~~k~~~L~q~relll~~~p~--ll-~~~l~~il~-~~~~~~~~vrk~~~~fiee~~~~~~e---~~--~~~l~~L~~lL 92 (248)
..+|+..|....+++-+.+.. +. -+-+|.++. +-.+++.++|.+.+..|..++..+++ .+ ...++.|..+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 357888888888888532211 21 245787888 76678899999999999988765432 22 46888999999
Q ss_pred cc-CChHHHHHHHHhhhhhh---HHHHHHHh--------hHhhhcCCccchHHHHHHHHHHH------HHHH--------
Q 025778 93 RD-GDSGVAGKSIVCGTNFF---CRVLEEIT--------MQFRWHGKVERWLEELWTWMVRF------KDAV-------- 146 (248)
Q Consensus 93 ~d-~~~~V~K~aI~~~t~lY---~~~l~~~a--------~~~~~~~~~~~~~~~~W~~m~~l------K~~I-------- 146 (248)
.. .++.|.+.++-+.+++- +...+.+. .+.+..+...-..+.+|-.-.-. +..+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 84 58899999999888874 22221111 12222211111224555432221 2222
Q ss_pred -HHHhccCCCcchHHHHHHHHhHHHhh
Q 025778 147 -FAIALEPGLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 147 -l~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (248)
+. ++.+.+..|+..|...+..++-.
T Consensus 214 Lv~-LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVA-LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHH-HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHH-HHcCCChhHHHHHHHHHHHHHhC
Confidence 33 55778889999999999887654
No 47
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=90.40 E-value=2.1 Score=39.53 Aligned_cols=95 Identities=22% Similarity=0.305 Sum_probs=72.7
Q ss_pred hcCCChHHHHHHHHHHHHHHhcC-CCc---hH-HhhhHHHHhccCCc-hhHHHHHHHHHHHHHhhhhhhhh-----hhHH
Q 025778 17 NNHGDLAVKLSSLKQVRGILSSA-DPS---LA-AELFPYLVELQSSP-ESLVRKSLIETIEDIGLKAMEHS-----SILM 85 (248)
Q Consensus 17 ~~~~d~~~k~~~L~q~relll~~-~p~---ll-~~~l~~il~~~~~~-~~~vrk~~~~fiee~~~~~~e~~-----~~~l 85 (248)
...+|...+...+..+++++... +|. +. .+++|.++++-.++ +..+|...+..+..++...++.. ..++
T Consensus 96 L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 175 (530)
T 1wa5_B 96 LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175 (530)
T ss_dssp HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 34567778889999999998643 442 11 46888888886665 78999999999999987443322 4568
Q ss_pred HHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 86 ~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
+.|..+|.++++.|...++.+..++.
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVA 201 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 88999999999999999998888764
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=89.87 E-value=2.7 Score=40.74 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=72.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhh------h
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK------A 77 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~------~ 77 (248)
.++..+.+....++-..|-..+.....+..+-.|. .+++++|.++..-.|++..||.-.+..+...+.. .
T Consensus 366 ~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 45566666655566667777777777776433333 4567777777666788999999998888877753 3
Q ss_pred hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 78 MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 78 ~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
.+++..+++.|...+.|+ +.|...+..+..++.
T Consensus 446 ~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 446 DVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLA 478 (876)
T ss_dssp TTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 467889999999999885 777666666555444
No 49
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.45 E-value=2.3 Score=37.26 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc---hH-HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhh---h--hhHHHHHHH
Q 025778 20 GDLAVKLSSLKQVRGILSSADPS---LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH---S--SILMPVLLA 90 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p~---ll-~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~---~--~~~l~~L~~ 90 (248)
++...+...+..+-.++-++.|. +. .+.+|.++.+-.+++..+|+..+..|..++..+++. + ..+++.|..
T Consensus 137 ~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 35556777777777777533331 33 367777777655678899999999999887655433 2 457888999
Q ss_pred hhccCChHHHHHHHHhhhhhhHH
Q 025778 91 FLRDGDSGVAGKSIVCGTNFFCR 113 (248)
Q Consensus 91 lL~d~~~~V~K~aI~~~t~lY~~ 113 (248)
||..+++.|...+..+..++-..
T Consensus 217 LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999888888777543
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=88.27 E-value=3 Score=38.75 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCch-----HHhhhHHHHhccCCchhHHHHHHHHHHHHHhhh-hhhhh-----hhHHHHH
Q 025778 20 GDLAVKLSSLKQVRGILSSADPSL-----AAELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHS-----SILMPVL 88 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p~l-----l~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~-~~e~~-----~~~l~~L 88 (248)
++...|......+.++.- .++.. -.+++|.++.+-.+.+.++|+..+..|.-++.. +++.. ..+++.|
T Consensus 328 ~~~~v~~~A~~aL~nl~a-~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L 406 (510)
T 3ul1_B 328 PKTNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL 406 (510)
T ss_dssp SSHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHc-CcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHH
Confidence 343444455555555543 22221 135777777776678889999999988876542 33322 4578889
Q ss_pred HHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHhH
Q 025778 89 LAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLET 168 (248)
Q Consensus 89 ~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~aiKF~e~ 168 (248)
..||+..|+.+++.++.+..++....= +. +. .......-+.... -+.|-. +..++|+-|+-.|.+++|+
T Consensus 407 ~~LL~~~d~~i~~~~L~aL~nil~~~~-----~~---~~-~~~~~~~iee~gg-l~~ie~-Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 407 MNLLSAKDTKIIQVILDAISNIFQAAE-----KL---GE-TEKLSIMIEECGG-LDKIEA-LQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHH-----TT---TC-HHHHHHHHHHTTH-HHHHHH-GGGCSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhH-----hc---cc-hHHHHHHHHHcCc-HHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 999999999999998888887765332 10 00 0011111111111 234445 6679999999999999998
Q ss_pred HH
Q 025778 169 HV 170 (248)
Q Consensus 169 vI 170 (248)
..
T Consensus 476 yf 477 (510)
T 3ul1_B 476 YF 477 (510)
T ss_dssp HC
T ss_pred HC
Confidence 84
No 51
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=87.80 E-value=0.79 Score=34.44 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 44 AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 44 l~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
.+.+.+.++++-.+++..+|...+..+.+.+.. .++.|..+|.|+++.|...++.+.+.+-
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------~~~~L~~~L~d~~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-------AFEPLLESLSNEDWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST-------THHHHHHGGGCSCHHHHHHHHHHHGGGC
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------HHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 355666666665567777777766555543321 1467777788888888888888777663
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.64 E-value=7.9 Score=36.97 Aligned_cols=92 Identities=8% Similarity=-0.101 Sum_probs=54.2
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccC
Q 025778 16 ANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (248)
Q Consensus 16 A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~ 95 (248)
....+|...|.+.++++--+...+++. +..+++++.+-.+++.++||-+-=++...+..++|...-++.++..-|.|.
T Consensus 42 ~l~~~~~~~k~~~l~kli~~~~~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~ 119 (618)
T 1w63_A 42 SFREEDNTYRCRNVAKLLYMHMLGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHS 119 (618)
T ss_dssp HHTTTCTTTHHHHHHHHHHHHHTTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCS
T ss_pred HhhCCCHHHHHHHHHHHHHHHHcCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCC
Confidence 333445557887777777766655542 446666776655777888887766666655555555444445544444555
Q ss_pred ChHHHHHHHHhhhh
Q 025778 96 DSGVAGKSIVCGTN 109 (248)
Q Consensus 96 ~~~V~K~aI~~~t~ 109 (248)
++.|.-.|+.+.++
T Consensus 120 n~~vr~lAL~~L~~ 133 (618)
T 1w63_A 120 TQFVQGLALCTLGC 133 (618)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHh
Confidence 55444444444443
No 53
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.51 E-value=4 Score=38.74 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=60.2
Q ss_pred cCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhH
Q 025778 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 38 ~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~ 112 (248)
..-|++-++-++.++.+.-|.+..||++.+.=|-.+|+- ++++++.+.|..||..+++.-+..+=.+..++|+
T Consensus 57 k~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 57 KHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp GGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 357888888999999999999999999999999999987 9999999999999998887644444444444443
No 54
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=86.04 E-value=28 Score=34.35 Aligned_cols=141 Identities=11% Similarity=0.037 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-----h
Q 025778 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----M 78 (248)
Q Consensus 4 s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-----~ 78 (248)
..-+++.++|+.....+|...|-+.-++++++ .++|+.. .++..++. .+.+.++|-+.+..+....+++ +
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~--~~~p~~~-~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQA--QVSPQAW-HFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHSTTHH-HHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hcCHHHH-HHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 34567888888866566765555444444442 2466544 24444543 4667899999999998776543 1
Q ss_pred hhhhhHHHHHHHhhcc---CChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccC--
Q 025778 79 EHSSILMPVLLAFLRD---GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEP-- 153 (248)
Q Consensus 79 e~~~~~l~~L~~lL~d---~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~-- 153 (248)
+--..+-..|..++.. ..+.|..+..++.+.|.+.-+ . +.|. .+=..+++ .+.+
T Consensus 96 ~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~----------------p-~~Wp---~~l~~l~~-~~~~~~ 154 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMM----------------P-DAWP---CAVADMVR-LFQAED 154 (963)
T ss_dssp GGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT----------------T-TTST---THHHHHHH-HHCC--
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC----------------c-cccc---hHHHHHHH-HHhhhc
Confidence 2222222233333332 246677777777776666444 1 1154 23345555 4443
Q ss_pred ---CCcchHHHHHHHHhHHH
Q 025778 154 ---GLVGTKLLALKFLETHV 170 (248)
Q Consensus 154 ---~n~Gvr~~aiKF~e~vI 170 (248)
.+...+..++.|+..+.
T Consensus 155 ~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 155 SPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp ----CHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhCH
Confidence 13446778888877665
No 55
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.48 E-value=6.5 Score=40.28 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=66.1
Q ss_pred HHHHH-HHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHh-ccCCchhHHHHHHHHHHHHHhhhhhhhhhhH
Q 025778 7 DQALS-LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVE-LQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (248)
Q Consensus 7 ~~~~~-lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~-~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (248)
..+++ ||.-+....+...+....-..-.+. -.+|+ ..|.+++ +..+.++.+|+-++--+..+|...+. .++
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~-~g~~e----~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~~a 648 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL-LRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--QSA 648 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-SSSCS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc-cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HHH
Confidence 34444 7777776644334433333333233 35664 4555654 34567889999999999988876653 778
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
++.|..++.|.|..|.+.||.+++-+
T Consensus 649 id~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 649 IDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 88999999999999999999877644
No 56
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=82.59 E-value=9.8 Score=32.08 Aligned_cols=70 Identities=7% Similarity=0.090 Sum_probs=48.6
Q ss_pred HhhhHHHHhccCCchhHHHHHHHHHHHHHh----hhh--h-hhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHH
Q 025778 45 AELFPYLVELQSSPESLVRKSLIETIEDIG----LKA--M-EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (248)
Q Consensus 45 ~~~l~~il~~~~~~~~~vrk~~~~fiee~~----~~~--~-e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~ 114 (248)
..+++.+++.-...++.+|--...+|..+. .+. + ..+..+++.+..++.|.|+.|-..++.+...+|+.+
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 455666665555667766666655555543 322 1 234567778888999999999999999999999754
No 57
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=81.87 E-value=3.9 Score=35.60 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=29.9
Q ss_pred hhHH---HHHHHhhccCChHHHHHHHHhhhhhhHHHH
Q 025778 82 SILM---PVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 82 ~~~l---~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l 115 (248)
.+.+ +.+..+++|.|..|-.-|+.|...+|+.+=
T Consensus 203 ~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 203 LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 4566 888899999999999999999999998765
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=80.95 E-value=16 Score=33.32 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhh--
Q 025778 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-- 80 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~-- 80 (248)
+.++.+|+. +|...|......++++..++++. .-.+.+|.++++-.+++.++++..+.-+..++..+++.
T Consensus 5 ~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 5 PKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp HHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455666653 45668999999999988654442 12567888888866788889999998888887643222
Q ss_pred -h--hhHHHHHHHhhc-cCChHHHHHHHHhhhhh
Q 025778 81 -S--SILMPVLLAFLR-DGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 81 -~--~~~l~~L~~lL~-d~~~~V~K~aI~~~t~l 110 (248)
+ .-.++.|..+|. ..++.+.+.+.-+..++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL 114 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL 114 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 1 345788888998 77888887776665543
No 59
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=80.68 E-value=18 Score=30.56 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChH
Q 025778 19 HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSG 98 (248)
Q Consensus 19 ~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~ 98 (248)
++|-..|+..|+=.--+- .+++....-|||.++.+-+|.+--||-..++-+..+...++. +-+++..-..=++|.+.-
T Consensus 155 skd~~Dkl~aLnFi~alG-en~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~l 232 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMG-ENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSL 232 (253)
T ss_dssp CSSHHHHHHHHHHHHTCC-TTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHH
T ss_pred CCChHHHHHHHHHHHHHh-ccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHH
Confidence 577778998888776655 478888999999999999999999999999999999888777 555666556667888888
Q ss_pred HHHHHHHhhh
Q 025778 99 VAGKSIVCGT 108 (248)
Q Consensus 99 V~K~aI~~~t 108 (248)
|.|.+..+.+
T Consensus 233 v~~~V~egL~ 242 (253)
T 2db0_A 233 VNKTVKEGIS 242 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766554
No 60
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=80.24 E-value=7.8 Score=35.98 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=68.4
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh-----hhHHHHH
Q 025778 18 NHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVL 88 (248)
Q Consensus 18 ~~~d~~~k~~~L~q~relll~~~p~----ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~-----~~~l~~L 88 (248)
.+++...+...++.+.+++-+.+.. +-.+.+|.++.+-.+++..+|+..+..|..++...++.. ..+++.|
T Consensus 303 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L 382 (529)
T 3tpo_A 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 382 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH
Confidence 4566667778888888887533211 114567777777667888999999999998876443322 4578889
Q ss_pred HHhhccCChHHHHHHHHhhhhhh
Q 025778 89 LAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 89 ~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
..+|.++++.|.+.|+.+.+++-
T Consensus 383 v~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 383 VGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999888877663
No 61
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=78.17 E-value=10 Score=32.96 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhc-CCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh
Q 025778 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSS-ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (248)
Q Consensus 5 ~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~-~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~ 77 (248)
...++++++++-..+.|-..|.--|+.+-|+.-. .||+.+..++.++=++-...++.++++..+.++++..+.
T Consensus 147 ~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 147 DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 3568899999999779999999999999999864 489999999999988866679999999999999998654
No 62
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=73.64 E-value=19 Score=35.35 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=46.8
Q ss_pred chHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh---h--hhhHHHHHHHhhcc-CChHHHHHHHHhhhhh
Q 025778 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---H--SSILMPVLLAFLRD-GDSGVAGKSIVCGTNF 110 (248)
Q Consensus 42 ~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e---~--~~~~l~~L~~lL~d-~~~~V~K~aI~~~t~l 110 (248)
.+....+|.++.+-.+.+..+|+..+..|..++..... . ...+++.|..+|.+ +++.+.+.++.+..++
T Consensus 146 ~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L 220 (780)
T 2z6g_A 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220 (780)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34466777777665567788888888888888764321 1 23577887777764 4788877777766553
No 63
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=73.61 E-value=22 Score=33.63 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCc--hH--HhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhhh--hhh--hhHHHHHH
Q 025778 19 HGDLAVKLSSLKQVRGILSSADPS--LA--AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAM--EHS--SILMPVLL 89 (248)
Q Consensus 19 ~~d~~~k~~~L~q~relll~~~p~--ll--~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~~--e~~--~~~l~~L~ 89 (248)
..|...|...+..+.++..+.... +. ++.++.++.+ ..+.+.++|+..+..|...+.... +.+ ...++.|.
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv 104 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV 104 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHH
Confidence 567778888888888888543321 11 3567777765 445578999999999987765331 111 35888999
Q ss_pred HhhccCChHHHHHHHHhhhhhh
Q 025778 90 AFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 90 ~lL~d~~~~V~K~aI~~~t~lY 111 (248)
.+|.++++.|.+.++.+..++-
T Consensus 105 ~lL~~~~~~v~~~A~~aL~nL~ 126 (644)
T 2z6h_A 105 KMLGSPVDSVLFYAITTLHNLL 126 (644)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998888774
No 64
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=71.36 E-value=28 Score=29.79 Aligned_cols=93 Identities=9% Similarity=0.134 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHh-ccCCchhHHHHHHHHHHHHHhh-hhhhhhhh
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVE-LQSSPESLVRKSLIETIEDIGL-KAMEHSSI 83 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~-~~~~~~~~vrk~~~~fiee~~~-~~~e~~~~ 83 (248)
.++.+.+....-.+.--..++-... ++-.. + -.++.|+.+.+ +..|.+=.||.+++..+.+.|. .+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~----lLg~~-~-~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVF----LFGYL-S-KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHH----HHHHT-T-TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHH----HHHhc-c-CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 3455555555555432223322221 33222 2 33778888776 8888999999999999999997 77774
Q ss_pred HHHHHHHhhccCChHHHHHHHHhh
Q 025778 84 LMPVLLAFLRDGDSGVAGKSIVCG 107 (248)
Q Consensus 84 ~l~~L~~lL~d~~~~V~K~aI~~~ 107 (248)
+++.+.....|+++.|-|-|+...
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhh
Confidence 556667788999999988888775
No 65
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=69.87 E-value=96 Score=31.21 Aligned_cols=104 Identities=5% Similarity=0.001 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-----hhh
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEH 80 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-----~e~ 80 (248)
-+++.++|.....+ +..+|-..-.+++++ .++|+.. .++-.++. .+.+..+|-|.+..+....+++ ++-
T Consensus 15 ~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~--~~~p~~~-~~l~~iL~--~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 15 IALLDQVVSTFYQG-SGVQQKQAQEILTKF--QDNPDAW-QKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHH--HHSTTGG-GGHHHHHH--HCSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHHHHHH--HhCchHH-HHHHHHHh--hCCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 45677788776654 433443333333332 2456544 34444543 3557889999999998776543 122
Q ss_pred hhhHHHHHHHhhccC---------ChHHHHHHHHhhhhhhHHHH
Q 025778 81 SSILMPVLLAFLRDG---------DSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 81 ~~~~l~~L~~lL~d~---------~~~V~K~aI~~~t~lY~~~l 115 (248)
-..+-..|..++.+. ++.|..+..++.+.+.+.-+
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~ 132 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEW 132 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhC
Confidence 222333333333322 25566666666666655433
No 66
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=69.04 E-value=45 Score=29.87 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHHHHhcCC-CchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhh-----hhHHHHHHHhhc
Q 025778 20 GDLAVKLSSLKQVRGILSSAD-PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLR 93 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~-p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~-----~~~l~~L~~lL~ 93 (248)
++...+...+..+..+.-+.. .....+++|.++++-.+.+.++|...+..+...+...++.. ...++.|..++.
T Consensus 239 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~ 318 (529)
T 1jdh_A 239 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHH
Confidence 333344444555555543221 12335677888777777888899888888888876433221 345677777776
Q ss_pred c--CChHHHHHHHHhhhhh
Q 025778 94 D--GDSGVAGKSIVCGTNF 110 (248)
Q Consensus 94 d--~~~~V~K~aI~~~t~l 110 (248)
+ +++.|...++.+.+++
T Consensus 319 ~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 319 RAGDREDITEPAICALRHL 337 (529)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 4 3467777777777655
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=68.99 E-value=41 Score=32.14 Aligned_cols=99 Identities=10% Similarity=0.170 Sum_probs=70.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC--chHHhhhHHHHhccC-CchhHHHHHHHHHHHHHhhhhhhhhhhH
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADP--SLAAELFPYLVELQS-SPESLVRKSLIETIEDIGLKAMEHSSIL 84 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p--~ll~~~l~~il~~~~-~~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (248)
+++.-|..-...+|...|.-.|.....++. .+| .++..+.+.++..-. |++..+|+...+.+-..|.. +.+..+
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~-~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~I 405 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLAS-SEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQI 405 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTT-CTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHH
Confidence 445555544455777788888999988885 555 567777777776433 77788999999999988854 346677
Q ss_pred HHHHHHhhccCChHHHHHHHHhhhh
Q 025778 85 MPVLLAFLRDGDSGVAGKSIVCGTN 109 (248)
Q Consensus 85 l~~L~~lL~d~~~~V~K~aI~~~t~ 109 (248)
+..|...+.+.|+...+.+|.+.+.
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~ 430 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAI 430 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7778888888887776666654443
No 68
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=68.49 E-value=49 Score=27.29 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-----hHHhhhHHHHhcc----CCchhHHHHHHHHHHHHHhhhh----hhhhhhHHH
Q 025778 20 GDLAVKLSSLKQVRGILSSADPS-----LAAELFPYLVELQ----SSPESLVRKSLIETIEDIGLKA----MEHSSILMP 86 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p~-----ll~~~l~~il~~~----~~~~~~vrk~~~~fiee~~~~~----~e~~~~~l~ 86 (248)
.|. .++..+-++-+-++ .+|+ .+.+++|.++..- -.+. .+|.+-++++..+|++. +.+-+++..
T Consensus 58 ~~l-~~L~~lm~~~~ALl-~N~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~ 134 (196)
T 4atg_A 58 KEA-EVLKTCIALYFSLI-KNKHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLK 134 (196)
T ss_dssp TCH-HHHHHHHHHHHHHH-HCTTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCccCchHHHHHHH
Confidence 455 45555555444444 3333 5578888887542 1222 89999999999999864 677899999
Q ss_pred HHHHhhccC--ChHHHHHHHHhhhhhhHHHH
Q 025778 87 VLLAFLRDG--DSGVAGKSIVCGTNFFCRVL 115 (248)
Q Consensus 87 ~L~~lL~d~--~~~V~K~aI~~~t~lY~~~l 115 (248)
++..-+-|+ +..+.=.||.+...+=+.+.
T Consensus 135 tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~v 165 (196)
T 4atg_A 135 TLKGVWMDPNRSEDSQYGALYCLSILSKNVV 165 (196)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhHHHHH
Confidence 999887765 45666677777777766666
No 69
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=66.23 E-value=24 Score=34.69 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=64.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCc--h--HHhhhHHHHhc-cCCchhHHHHHHHHHHHHHhhhhh--hh--hhhHHHHHH
Q 025778 19 HGDLAVKLSSLKQVRGILSSADPS--L--AAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAM--EH--SSILMPVLL 89 (248)
Q Consensus 19 ~~d~~~k~~~L~q~relll~~~p~--l--l~~~l~~il~~-~~~~~~~vrk~~~~fiee~~~~~~--e~--~~~~l~~L~ 89 (248)
..|...|...+..+.++..+.+.. + .+++++.++.+ ..+.+.++|+..+..|...+.... +. -...++.|.
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv 240 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALV 240 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHH
Confidence 566667777777777776432111 1 13567777655 344588999999999998664321 11 146889999
Q ss_pred HhhccCChHHHHHHHHhhhhhh
Q 025778 90 AFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 90 ~lL~d~~~~V~K~aI~~~t~lY 111 (248)
.+|.++++.|.+.++.+..++-
T Consensus 241 ~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 241 NMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999888773
No 70
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=64.96 E-value=44 Score=29.94 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc--h-HHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh---hh--hhHHHHHHHh
Q 025778 20 GDLAVKLSSLKQVRGILSSADPS--L-AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLAF 91 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p~--l-l~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e---~~--~~~l~~L~~l 91 (248)
+|...+......++++..+.++. + -.+.+|.++++-.+++..+|+..+..+..+|..+.+ .+ ...++.|..+
T Consensus 72 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 46667777777788765432211 1 135677888886777889999999999988865322 22 5678899999
Q ss_pred hccCChHHHHHHHHhh
Q 025778 92 LRDGDSGVAGKSIVCG 107 (248)
Q Consensus 92 L~d~~~~V~K~aI~~~ 107 (248)
+.++++.+...+..+.
T Consensus 152 l~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCL 167 (529)
T ss_dssp GGCCCHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHH
Confidence 9998877765554443
No 71
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=64.71 E-value=37 Score=32.09 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=61.3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc--h-HHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh----hh-hhHHHHHHHh
Q 025778 20 GDLAVKLSSLKQVRGILSSADPS--L-AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME----HS-SILMPVLLAF 91 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~p~--l-l~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e----~~-~~~l~~L~~l 91 (248)
.+...+......++.+..+.++. + -.+.+|.++++-.+++..+|+..+..|..++....+ .. ...++.|..+
T Consensus 69 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 46667777777777766432211 1 134677788886677889999999999998865322 11 5688999999
Q ss_pred hccCChHHHHHHHHhhh
Q 025778 92 LRDGDSGVAGKSIVCGT 108 (248)
Q Consensus 92 L~d~~~~V~K~aI~~~t 108 (248)
|.++++.+...+..+..
T Consensus 149 L~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp GGCCCHHHHHHHHHHHH
T ss_pred HCcCCHHHHHHHHHHHH
Confidence 99988876665544443
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=59.34 E-value=47 Score=32.92 Aligned_cols=191 Identities=12% Similarity=0.051 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-----hhh
Q 025778 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEH 80 (248)
Q Consensus 6 ~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-----~e~ 80 (248)
-+++.+++..... +|...|-+.-+.+++ +.++|+.. .++..++. .+.+.++|-+.+..+....+++ ++.
T Consensus 6 ~~~l~~~l~~~~~-~d~~~r~~A~~~L~~--~~~~p~~w-~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 6 IARLEEAVVSFYR-SNSQNQAITHEWLTD--AEASPQAW-QFSWQLMQ--LGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp -----CTHHHHHT-STTTC----CHHHHH--TTTSTHHH-HHHHHHTC--TTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHH--HHcCHHHH-HHHHHHHh--cCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 3456666666443 443334333333333 23566543 24444543 4567899999999998776543 122
Q ss_pred hhhHHHHHHHhhcc---CChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCC---
Q 025778 81 SSILMPVLLAFLRD---GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPG--- 154 (248)
Q Consensus 81 ~~~~l~~L~~lL~d---~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~--- 154 (248)
-..+-..|..++.. ..+.|..+..++.+.+...-+ . .|.. +=..+++ .+.++
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~----------------p--~Wp~---~l~~l~~-~~~~~~~~ 137 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHML----------------G--EWPG---AIEEVIN-TFQNQRMP 137 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT----------------C--C---------HHHH-HHHHTC--
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc----------------c--cccH---HHHHHHH-HHhccccc
Confidence 22222233333322 246666666666666555333 1 3432 2234454 33432
Q ss_pred ---CcchHHHHHHHHhHHHh-hccCCCCCcccccccCCcccccccccCCCCCCCChhhHHHHHHHHHHHHHHHhhhccCC
Q 025778 155 ---LVGTKLLALKFLETHVL-LFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNL 230 (248)
Q Consensus 155 ---n~Gvr~~aiKF~e~vIl-~qt~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~ss~ 230 (248)
+.+.+..++.|+..+-= ++..+ +. .++ .++ ...|..+...+++.+...+....+.
T Consensus 138 ~~~~~~~~~~~l~iL~~l~EEi~~~~---~~-~~r---------------~~~--~~~l~~~~~~vl~ll~~~l~~~~~~ 196 (971)
T 2x1g_F 138 NVSADVQLWIMLEVLTAIPEEAQVIH---TS-VKR---------------VVL--RAEIAKRVQLVIHTVERYLKLQMNR 196 (971)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCC---CS-SCH---------------HHH--HHHHHTTHHHHHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHhHHHHhccC---cH-HHH---------------HHH--HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45677778877775541 22211 00 000 001 2456666777777777777644221
Q ss_pred C-----hhHHHHHHHHHHHH
Q 025778 231 P-----GSVIITVVNCLNSL 245 (248)
Q Consensus 231 ~-----~~l~~a~lnsL~~i 245 (248)
. ..+...++.|+...
T Consensus 197 ~~~~~~~~~~~~al~~l~~~ 216 (971)
T 2x1g_F 197 VWDAEAYSNMNRAVKCVGTW 216 (971)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHHHHHH
Confidence 1 14677777887643
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=58.49 E-value=1.5e+02 Score=29.42 Aligned_cols=102 Identities=7% Similarity=0.036 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-------
Q 025778 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA------- 77 (248)
Q Consensus 5 ~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~------- 77 (248)
..+++.++|.++.+ +|...+ .-.+++++ .+.|.+...++. ++. ..+.+.++|.+.+-.+....+++
T Consensus 3 d~~~l~~~L~~~~s-pd~~~r--Ae~~L~~~--~~~p~~~~~L~~-il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~ 75 (960)
T 1wa5_C 3 DLETVAKFLAESVI-ASTAKT--SERNLRQL--ETQDGFGLTLLH-VIA-STNLPLSTRLAGALFFKNFIKRKWVDENGN 75 (960)
T ss_dssp HHHHHHHHHHHTTS-GGGHHH--HHHHHHHH--HTSTTHHHHHHH-HHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSC
T ss_pred cHHHHHHHHHHhcC-CCHHHH--HHHHHHHh--hcCCCHHHHHHH-HHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 56789999998665 454444 33444443 467765543333 322 23345678888777777555432
Q ss_pred ----hhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHH
Q 025778 78 ----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (248)
Q Consensus 78 ----~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~ 113 (248)
++--..+=..|...+.++++.|.+++-++.+.|.+.
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~ 115 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS 115 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 111122333445555556677777777777766553
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=57.64 E-value=1.4e+02 Score=29.83 Aligned_cols=132 Identities=9% Similarity=0.072 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhcCCC-------chHH--hhhHHHHhccCCchhHHHHHHHHHHHHHhhhhh----hhh----hh--
Q 025778 23 AVKLSSLKQVRGILSSADP-------SLAA--ELFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHS----SI-- 83 (248)
Q Consensus 23 ~~k~~~L~q~relll~~~p-------~ll~--~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~----e~~----~~-- 83 (248)
-++.+.|..+.+|.-..++ .++. +.+|.+.++-.+.+..+||-.++.|.-.+.... ++. ++
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhh
Confidence 3588888998898865432 1454 488988888878888999999888886654222 121 22
Q ss_pred -HHHHHHHhhccCChHHHHHHHHhhhhh---hHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhcc--CCCcc
Q 025778 84 -LMPVLLAFLRDGDSGVAGKSIVCGTNF---FCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALE--PGLVG 157 (248)
Q Consensus 84 -~l~~L~~lL~d~~~~V~K~aI~~~t~l---Y~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d--~~n~G 157 (248)
-++.|..|+..+|..+.+.|.-+.+++ ++.+- +++... . ..-+.++. ++. .+++|
T Consensus 654 ~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia-----~~ll~~------~-------~gi~~Ll~-lL~~~~~~~~ 714 (778)
T 3opb_A 654 RNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA-----KELLTK------K-------ELIENAIQ-VFADQIDDIE 714 (778)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH-----HHHTTC------H-------HHHHHHHH-HHHHTTTCHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH-----HHHHHc------c-------ccHHHHHH-HHhccCCCHH
Confidence 377888889889998888877666655 56555 444321 0 33344455 343 38999
Q ss_pred hHHHHHHHHhHHHhhc
Q 025778 158 TKLLALKFLETHVLLF 173 (248)
Q Consensus 158 vr~~aiKF~e~vIl~q 173 (248)
+|-.++.++-.++-+.
T Consensus 715 l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 715 LRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998877544
No 75
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=55.20 E-value=1.4e+02 Score=29.06 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhcc----CCh-----
Q 025778 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD----GDS----- 97 (248)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d----~~~----- 97 (248)
+.|.+-..|+ .+..|+-.|+. .+|-|.+-+..-|.-+|++|--+.-.+.|++..++.+|..=|-+ .+|
T Consensus 110 ~~l~~f~~LL--~nK~FLl~fI~-tLE~q~~Fs~rDr~~vASLL~vaL~~kleY~T~Il~~LL~dLi~~~~~k~PkLmlR 186 (644)
T 3hm6_X 110 QGLGQLSNLL--NSKLFLTKFIH-TLETQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYVAKNPKLMLR 186 (644)
T ss_dssp HHHHHHHHHH--TCHHHHHHHHH-HHHHCTTCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSCGGGTTC
T ss_pred HHHHHHHHHh--cccHHHHHHHH-HHhcCcccccccchhhHHHHHHHhccchhHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 4677777777 67778878887 56778888889999999999988888888888777766543221 223
Q ss_pred ---HHHHHHH-Hhhh-hhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHH
Q 025778 98 ---GVAGKSI-VCGT-NFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFA 148 (248)
Q Consensus 98 ---~V~K~aI-~~~t-~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~ 148 (248)
.|+-+-. --++ .+|+.+- +...+..|-.+.+||.+|=.
T Consensus 187 RTESVvEKmLtnWmsicLY~~Lr-------------e~aGepLf~L~~AiKqQv~K 229 (644)
T 3hm6_X 187 RTETVVEKLLTNWMSICLYTFVR-------------DSVGEPLYMLFRGIKHQVDK 229 (644)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHH-------------HTTHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhhhh-------------hhcchHHHHHHHHHHHhccc
Confidence 3443322 2223 5666444 12358999999999999864
No 76
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=52.81 E-value=40 Score=28.26 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=44.9
Q ss_pred hHHHHhccCCchh--HHHHHHHHHHHHHhhhhhh---hh--hhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 48 FPYLVELQSSPES--LVRKSLIETIEDIGLKAME---HS--SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 48 l~~il~~~~~~~~--~vrk~~~~fiee~~~~~~e---~~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+|.++++-..++. +++...+.+|.-.|..+++ .+ ...++.|..+|+.+++.+.+.|.-+..++
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nL 79 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNL 79 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5666666444444 7888888888877764422 22 45789999999999999988888877766
No 77
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=51.73 E-value=11 Score=32.35 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHH---------HHHH--------HhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHH
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQ---------VRGI--------LSSADPSLAAELFPYLVELQSSPESLVRKSLIETI 70 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q---------~rel--------ll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fi 70 (248)
-++.+|.++ . .+ ++.+..++. +||. +...+|+ ..++.+.+...|++..|||.+++.+
T Consensus 90 ~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 90 YAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---KALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp HHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---TTHHHHHHHHHCSSHHHHHHHHHHT
T ss_pred HHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---HHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 446677766 2 33 466766666 5555 3223452 3556666777899999999999887
Q ss_pred HHHhhh--hhhhhhhHHHHHHHhhccCChHHHHHHHHhhhh
Q 025778 71 EDIGLK--AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (248)
Q Consensus 71 ee~~~~--~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~ 109 (248)
---|+. ..+....+++.|..+..|++--|-|.+--....
T Consensus 164 rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 164 RIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp CSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred HHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 533332 123334566666677778877777665544443
No 78
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=51.34 E-value=1.1e+02 Score=25.59 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHhcCCCc---h-HHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh-
Q 025778 7 DQALSLLAAANNHGDL--AVKLSSLKQVRGILSSADPS---L-AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME- 79 (248)
Q Consensus 7 ~~~~~lln~A~~~~d~--~~k~~~L~q~relll~~~p~---l-l~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e- 79 (248)
+.++++|+ ++|. ..|.......+.+..++++. + -...+|.++++-..++.++++..+.-|.-++..+++
T Consensus 11 ~~lV~lL~----s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 11 ERAVSMLE----ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp HHHHHTCC----SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhC----CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 34455543 3443 56777778888888655432 1 145678888886667889999999999888764322
Q ss_pred --hh--hhHHHHHHHhhc-cCChHHHHHHH
Q 025778 80 --HS--SILMPVLLAFLR-DGDSGVAGKSI 104 (248)
Q Consensus 80 --~~--~~~l~~L~~lL~-d~~~~V~K~aI 104 (248)
.+ .-.++.|..+|+ ..++.+.+.+.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~ 116 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQIT 116 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHH
Confidence 22 457888888997 46787777664
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=49.32 E-value=34 Score=30.35 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=47.2
Q ss_pred hhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh---hh--hhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 46 ~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e---~~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
+.+|.++++-.+.+.++++-.+..|..++..+++ .+ .-+++.|..||...++.+.+.+..+..++.
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4567777776677778999999888888754332 22 456888888998888888777766655543
No 80
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=46.20 E-value=42 Score=32.23 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=54.5
Q ss_pred CCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh---hh--hhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 40 ~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e---~~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+..+-+.-+|.++++-.+.+.+++...+..|..+|..+.+ .+ ...++.|..+|..+++.|...|+-+..+|
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4446666778888776667888999999999988864432 12 56789999999999999988888877765
No 81
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=45.67 E-value=1.7e+02 Score=26.29 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=24.2
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHhhhh--hh-hhhhHHHHHHHhhccC
Q 025778 49 PYLVELQSSPESLVRKSLIETIEDIGLKA--ME-HSSILMPVLLAFLRDG 95 (248)
Q Consensus 49 ~~il~~~~~~~~~vrk~~~~fiee~~~~~--~e-~~~~~l~~L~~lL~d~ 95 (248)
|.++++-.+++.++||-.+..|...+... .+ .-..+++.|..+|...
T Consensus 334 ~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 334 PQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSC
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCC
Confidence 44444444555666666666666554321 11 1134566666666654
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=45.35 E-value=1.3e+02 Score=24.87 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=91.1
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhcCCCc--------hHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh---------
Q 025778 15 AANNHGDLAVKLSSLKQVRGILSSADPS--------LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--------- 77 (248)
Q Consensus 15 ~A~~~~d~~~k~~~L~q~relll~~~p~--------ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~--------- 77 (248)
+=..+.+=.++.+.+.++++++-+.... .+..+.+.+-.+-.|.+..+..-.++++...+...
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 3345567778888888888887532111 12233333334446888888888888887665321
Q ss_pred -hhhhhhHHHHHHHh-hccCChHHHHHHHHhhhhhh------HHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHH----
Q 025778 78 -MEHSSILMPVLLAF-LRDGDSGVAGKSIVCGTNFF------CRVLEEITMQFRWHGKVERWLEELWTWMVRFKDA---- 145 (248)
Q Consensus 78 -~e~~~~~l~~L~~l-L~d~~~~V~K~aI~~~t~lY------~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~---- 145 (248)
......+++.|..= +.|..+.+...++.++..++ ..+++.+. .+. .+++..-...+..++..+=..
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~-~~l-~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVI-PFF-EKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHG-GGG-GCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHH-hccCHHHHHHHHHHHHHHHHHhCCC
Confidence 23345666666653 67788888777776665443 23444443 333 344444456777777654221
Q ss_pred --------------HHHHhccCCCcchHHHHHHHHhHHH
Q 025778 146 --------------VFAIALEPGLVGTKLLALKFLETHV 170 (248)
Q Consensus 146 --------------Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (248)
+.. .+++.|.+||-.|++++-.+-
T Consensus 174 ~~~~k~~l~~i~~~l~k-~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 174 NVNVQTFLPELLKHVPQ-LAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp TCCHHHHHHHHGGGHHH-HHTCSSHHHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHH
Confidence 122 457889999999999885543
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=44.81 E-value=1.5e+02 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=13.5
Q ss_pred hhcCCChHHHHHHHHHHHHHHhc
Q 025778 16 ANNHGDLAVKLSSLKQVRGILSS 38 (248)
Q Consensus 16 A~~~~d~~~k~~~L~q~relll~ 38 (248)
...+.|-...+..++-.+-++.+
T Consensus 83 llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 83 ALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHTT
T ss_pred HHhccchhHHHHHHHHHHHHHcC
Confidence 33445644556677777777643
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=44.63 E-value=1.2e+02 Score=26.11 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhh---HHHHhccCCchhHHHHHHHHHHHHHhhhhhh
Q 025778 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELF---PYLVELQSSPESLVRKSLIETIEDIGLKAME 79 (248)
Q Consensus 4 s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l---~~il~~~~~~~~~vrk~~~~fiee~~~~~~e 79 (248)
++..++.+.+-++-.+.+.-.+.+.|..+..++-..... ....+ |.+..+-.|++..||.....-+.|+.+..-+
T Consensus 163 ~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 163 VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 355667777777888888889999999999998644433 35678 9898888899999999999999888765444
No 85
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=43.43 E-value=79 Score=31.62 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=47.3
Q ss_pred hhhHHHHhccCCchhHHHHHHHHHHHHHhhhh---hh-hh--hhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKA---ME-HS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 46 ~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~---~e-~~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
+.++.++.+-...+..+|+-.+..|.-++... .+ .+ ...++.|..||.++++.+.+++..+..++-
T Consensus 665 g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp SHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34555666655567788988888888776522 22 22 357888999999999999999888877754
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=42.86 E-value=49 Score=30.61 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=48.5
Q ss_pred HhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh---hh--hhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 45 ~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e---~~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
.+.+|.++++-.+.+.++++..+..|..++..+++ .+ .-+++.|..||...++.+.+.|..+..+|
T Consensus 378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448 (458)
T ss_dssp TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35677787776677788999999999888754332 22 45678899999888888887777666554
No 87
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=41.40 E-value=40 Score=29.96 Aligned_cols=80 Identities=10% Similarity=0.170 Sum_probs=54.3
Q ss_pred HHHHhcCCCchHHhhhHHHHhcc---CCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhccC--ChHHHHHHHHhh
Q 025778 33 RGILSSADPSLAAELFPYLVELQ---SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG--DSGVAGKSIVCG 107 (248)
Q Consensus 33 relll~~~p~ll~~~l~~il~~~---~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~--~~~V~K~aI~~~ 107 (248)
-+.+.+.+|.|+...++++-... .+.+..+.|-+++.|.+..+....+...-++.|..++.-. ++.+..+|..-.
T Consensus 105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~~~~~d~~~k~Kvl~li 184 (315)
T 3qml_C 105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYERNNKDKQLQIKVLELI 184 (315)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 34444578998888888764432 2234478888889998776654434444556666666655 899999999888
Q ss_pred hhhhH
Q 025778 108 TNFFC 112 (248)
Q Consensus 108 t~lY~ 112 (248)
.-+|.
T Consensus 185 ~d~f~ 189 (315)
T 3qml_C 185 SKILK 189 (315)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 88885
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=39.99 E-value=2.8e+02 Score=27.22 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=62.6
Q ss_pred chHHhhhHHHHhccC-CchhHHHHHHHHHHHHHh---hhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHH
Q 025778 42 SLAAELFPYLVELQS-SPESLVRKSLIETIEDIG---LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (248)
Q Consensus 42 ~ll~~~l~~il~~~~-~~~~~vrk~~~~fiee~~---~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~ 117 (248)
..++++++-+.++.. |+++.||.-....+...+ ..+++++..+++.|...+ | +.|...|..+...+-+.+
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~--- 574 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC--- 574 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH---
Confidence 466777774446653 567889988877777544 356788899999888877 4 666555544444333211
Q ss_pred HhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccC--CCcchHHHHHHHHhHHHhh
Q 025778 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEP--GLVGTKLLALKFLETHVLL 172 (248)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~--~n~Gvr~~aiKF~e~vIl~ 172 (248)
.+..-..+..+-+.+.. +++. .....+..+++.+-.++..
T Consensus 575 --------------~~~l~p~~~~ll~~l~~-~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 575 --------------QLQLKPYADPLLNACHA-SLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp --------------HHHHHHHHHHHHHHHHH-HHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred --------------HHhccccHHHHHHHHHH-HHcCCCCChHHHHHHHHHHHHHHHh
Confidence 01222333445555555 3443 2356777777777666643
No 89
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=39.84 E-value=2.3e+02 Score=28.32 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=50.1
Q ss_pred HhhhHHHHhccCCc--hhHHHHHHHHHHHHHhhhh---hhhh--hhHHHHHHHhhccCChHHHHHHHHhhhhhhH
Q 025778 45 AELFPYLVELQSSP--ESLVRKSLIETIEDIGLKA---MEHS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (248)
Q Consensus 45 ~~~l~~il~~~~~~--~~~vrk~~~~fiee~~~~~---~e~~--~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~ 112 (248)
..+++.+..+-.++ +.++|+|.++-|.+.+... .++. ..+++.|..+|..+++.+...+..+.++|-.
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 35566555552233 7899999999999997643 2333 5688999999999999998888888777654
No 90
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=39.00 E-value=2.6e+02 Score=26.61 Aligned_cols=93 Identities=13% Similarity=0.137 Sum_probs=43.8
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCc--hHHhhhHHHHhccCCc--------hhHHHHHHHHHHHHHhhhhhhhh-----h
Q 025778 18 NHGDLAVKLSSLKQVRGILSSADPS--LAAELFPYLVELQSSP--------ESLVRKSLIETIEDIGLKAMEHS-----S 82 (248)
Q Consensus 18 ~~~d~~~k~~~L~q~relll~~~p~--ll~~~l~~il~~~~~~--------~~~vrk~~~~fiee~~~~~~e~~-----~ 82 (248)
.+++...+......++++..+.+-. +-.+.+|.++++-... +.++..-....+..++..+++.. .
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~ 444 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 3344445555555555555432211 2245556555552222 23445445555555544332211 3
Q ss_pred hHHHHHHHhhccC--ChHHHHHHHHhhhhh
Q 025778 83 ILMPVLLAFLRDG--DSGVAGKSIVCGTNF 110 (248)
Q Consensus 83 ~~l~~L~~lL~d~--~~~V~K~aI~~~t~l 110 (248)
..++.|..|+++. .+.+.|-|-+...++
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 4555666666654 555555555544443
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=36.85 E-value=70 Score=32.25 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=44.0
Q ss_pred hHHhhhHHHHhccC-----CchhHHHH---HHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 43 LAAELFPYLVELQS-----SPESLVRK---SLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 43 ll~~~l~~il~~~~-----~~~~~vrk---~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
+++++++.++.+.. ++.+.+|. |+++=+.+....+++++..+++.|...+.|.++.|.-.|..++..+-
T Consensus 492 ~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~ 568 (1049)
T 3m1i_C 492 FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIV 568 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45566665554421 24455553 44443334455678999999999998898888888766666555443
No 92
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=36.14 E-value=15 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.3
Q ss_pred cccccccCCCCCCCChhhHHHHHHHH
Q 025778 191 TFNISWLSGGHPFLDPVSLTSEANRM 216 (248)
Q Consensus 191 d~sl~~vP~~Hp~l~~~~Le~Ea~~l 216 (248)
.|.++.|..+|+||+...|++=..++
T Consensus 46 PIdi~~VkkDH~FLd~d~l~sL~RRl 71 (81)
T 2h80_A 46 PINIVAVKNDHDFLEKDLVEPLCRRL 71 (81)
T ss_dssp CSCHHHHHTSCCSSCSTTHHHHHHHH
T ss_pred cccHHHhccCCCccCHHHHHHHHHHH
Confidence 57888999999999999999876664
No 93
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=32.53 E-value=3.5e+02 Score=26.19 Aligned_cols=107 Identities=19% Similarity=0.058 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhcc-----C-Ch--
Q 025778 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD-----G-DS-- 97 (248)
Q Consensus 26 ~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~d-----~-~~-- 97 (248)
-+.|.+-..|+ .+..|+-.|+. .+|-|.+-+..-|.-+|++|--+.-.+.|++..++.+|..=|-+ . .|
T Consensus 83 e~~l~~f~~LL--~nk~FLl~fI~-tLE~q~~Fs~rDr~~vASLL~vaL~~kleY~T~Il~~LL~dli~~~v~~k~~PkL 159 (627)
T 3ig3_A 83 EKALRLFGQLL--HSRAFLLTFIH-TLEAQSSFSMRDRGTVASLTMVALQSRLDYATGLLKQLLADLIEKNLESKNHPKL 159 (627)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHH-HHHTCTTCCHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHHh--cccHHHHHHHH-HHhcCCCcchhcchhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcccCCcch
Confidence 35677777777 67778878877 56778788889999999999988888888887777765543221 1 22
Q ss_pred ------HHHHHHH-Hhhh-hhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHH
Q 025778 98 ------GVAGKSI-VCGT-NFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFA 148 (248)
Q Consensus 98 ------~V~K~aI-~~~t-~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~ 148 (248)
.|+-+-. --++ .+|+.+- +...+..|-.+.+||.+|=.
T Consensus 160 mlRRtESVvEKmLtnW~sicLY~~Lk-------------e~aGepLf~L~~AiK~Qv~K 205 (627)
T 3ig3_A 160 LLRRTESVAEKMLTNWFTFLLHKFLK-------------ECAGEPLFLLYCAIKQQMEK 205 (627)
T ss_dssp TTTSCCCHHHHHHHHHHHHHTHHHHH-------------HTTHHHHHHHHHHHHHHHTT
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHH-------------hhcchhHHHHHHHHHHhccc
Confidence 3443322 2222 5666444 22358999999999998863
No 94
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=30.09 E-value=55 Score=33.48 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=45.1
Q ss_pred hHHhhhHHHHhccC-----CchhHHHH---HHHHHHHHHhhhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 43 LAAELFPYLVELQS-----SPESLVRK---SLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 43 ll~~~l~~il~~~~-----~~~~~vrk---~~~~fiee~~~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
++++++|.++.+-. |+...||. |+++=+.+-...+++++..++..|...+.++.|.|.-.|..++..+
T Consensus 492 ~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l 567 (1023)
T 4hat_C 492 FVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKI 567 (1023)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 56677777776643 34455664 4444333444678999999999999888888887766665554443
No 95
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=29.08 E-value=12 Score=27.09 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCChhhHHHHHHHH
Q 025778 191 TFNISWLSGGHPFLDPVSLTSEANRM 216 (248)
Q Consensus 191 d~sl~~vP~~Hp~l~~~~Le~Ea~~l 216 (248)
.|.++.|..+|+||+...|++=..++
T Consensus 48 PIdi~~VkkDH~FLd~d~l~sL~RRl 73 (91)
T 2dky_A 48 PIDISLVKREHDFLDRDAIEALCRRL 73 (91)
T ss_dssp SCCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred cccHHHhccCCCccCHHHHHHHHHHH
Confidence 57888999999999999998876653
No 96
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=28.92 E-value=1.1e+02 Score=26.86 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHhhhhh---hhh---hhHHHHHHHhhccCChHHHHHHHHhhhhh
Q 025778 59 ESLVRKSLIETIEDIGLKAM---EHS---SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 59 ~~~vrk~~~~fiee~~~~~~---e~~---~~~l~~L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
+.++|+..+..|..+|..+. ..+ ..+++.|..+|+.+++.|...++.+..++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 154 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 154 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 56899999999999986442 222 34699999999999998888877766554
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=28.46 E-value=4.8e+02 Score=26.63 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=59.3
Q ss_pred ccchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh-c-CCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhh
Q 025778 2 AAVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILS-S-ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME 79 (248)
Q Consensus 2 ~~s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll-~-~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e 79 (248)
+.|.+++++++|.+.....+. .-.+.-.-+--++. . .++..+..++..+.+ +.+..+||+.+.=|..++..+++
T Consensus 466 ~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCCChH
Confidence 345667888888777765442 11111111112221 1 244455555554443 44568999999888888887887
Q ss_pred hhhhHHHHHHHhhccCChHHHHHHHHhhhhhh
Q 025778 80 HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (248)
Q Consensus 80 ~~~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY 111 (248)
.+..+++.|. .+++|.|-..++.+.+..|
T Consensus 542 ~~~~li~~L~---~~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 542 LADDLITKML---ASDESLLRYGGAFTIALAY 570 (963)
T ss_dssp GGHHHHHHHH---HCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHHHHHHh
Confidence 7776666443 4677777666655554333
No 98
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=28.44 E-value=2.1e+02 Score=22.38 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=45.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhh
Q 025778 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL 75 (248)
Q Consensus 8 ~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~ 75 (248)
++.+++++=-.++|..|=+..++. + +.|++.+.|+-.++..+-|+...-|..++.++...+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~e---L---~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRD---L---NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHH---H---TCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH---h---CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 566777777777887665555544 2 3577888888888888888888788888888887654
No 99
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=25.38 E-value=4.8e+02 Score=25.37 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=43.4
Q ss_pred chHHhhhHHHHhccCCchhHHHHHHHHHHHHHh---hhhhhhhhhHHHHHHHhhccCChHHHHHHHHhhh
Q 025778 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIG---LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGT 108 (248)
Q Consensus 42 ~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~---~~~~e~~~~~l~~L~~lL~d~~~~V~K~aI~~~t 108 (248)
.+++.+++.+.++.. +++.||.-...++...+ ..+++++..+++.|...+.+ +.|...|..++.
T Consensus 486 ~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~ 552 (963)
T 2x19_B 486 DVVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLK 552 (963)
T ss_dssp SHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHH
Confidence 467777776556653 46678888877777544 35578888888888888865 666555554443
No 100
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=25.02 E-value=1.3e+02 Score=24.44 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=17.9
Q ss_pred HHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHH
Q 025778 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIE 68 (248)
Q Consensus 32 ~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~ 68 (248)
+..++. ++|. .+.+.+.+...+++.-+||+.+.
T Consensus 114 ~~~~~~-~~~~---~~~~~i~~W~~s~~~w~rR~ai~ 146 (220)
T 2b6c_A 114 FGSWVA-LHLT---ELPTIFALFYGAENFWNRRVALN 146 (220)
T ss_dssp HHHHHH-HSGG---GHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHH-HChH---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 444443 4552 23344445666667777777765
No 101
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=24.57 E-value=4.9e+02 Score=25.28 Aligned_cols=144 Identities=11% Similarity=0.049 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH-HhhhHHHHhc-cCCc-hhHHHHHHHHHHHHHhhhh---
Q 025778 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA-AELFPYLVEL-QSSP-ESLVRKSLIETIEDIGLKA--- 77 (248)
Q Consensus 4 s~~~~~~~lln~A~~~~d~~~k~~~L~q~relll~~~p~ll-~~~l~~il~~-~~~~-~~~vrk~~~~fiee~~~~~--- 77 (248)
|..|-+-.|.+.-..++-...+.+.+...|.+. .++|.-. ..=+|.++.. +.|+ +.++=|-+.+-+--++..+
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s-k~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLS-KKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTT-TTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHH-HHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 455666666666677777778999999999997 4777643 3346666644 5553 5566666766554333211
Q ss_pred -----------------hhhh---hhHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHH
Q 025778 78 -----------------MEHS---SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWT 137 (248)
Q Consensus 78 -----------------~e~~---~~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~ 137 (248)
.+.. ..-++.|..+|+.+|-.|.-.++|+.+.+-.. ..+..|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~-----------------r~~~~Q~ 159 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ-----------------LGPQVQQ 159 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-----------------SHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc-----------------CcHHHHH
Confidence 0111 45677788899999988888888887765431 1245677
Q ss_pred HHHHH---HHHHHHHhccCCCcchHHHHHHHH
Q 025778 138 WMVRF---KDAVFAIALEPGLVGTKLLALKFL 166 (248)
Q Consensus 138 ~m~~l---K~~Il~~~~d~~n~Gvr~~aiKF~ 166 (248)
.+... -.++++ ++++.++-+|-.++=++
T Consensus 160 ~Il~~p~gi~~Lv~-lL~d~rE~iRneallLL 190 (651)
T 3grl_A 160 IILVSPMGVSRLMD-LLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHSTTHHHHHHG-GGGCSSHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHH-HHhCchHHHHHHHHHHH
Confidence 66643 233344 44556666666655443
No 102
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=23.17 E-value=3.1e+02 Score=25.05 Aligned_cols=133 Identities=10% Similarity=0.005 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHHHhcCC---CchH--HhhhHHHHhccCCch-h---HHHHHHHHHHHHHhh---hhhhh---h--h
Q 025778 20 GDLAVKLSSLKQVRGILSSAD---PSLA--AELFPYLVELQSSPE-S---LVRKSLIETIEDIGL---KAMEH---S--S 82 (248)
Q Consensus 20 ~d~~~k~~~L~q~relll~~~---p~ll--~~~l~~il~~~~~~~-~---~vrk~~~~fiee~~~---~~~e~---~--~ 82 (248)
++...+...+..+.+|..+.+ +.+. ...+|.++++-...+ . ++++-.+..|..++. ..++. + .
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 454556666677777775221 2232 456676665533222 2 578877777776654 23222 1 3
Q ss_pred hHHHHHHHhhccCChHHHHHHHHhhhhhhHHHHHHHhhHhhhcCCccchHHHHHHHHHHHHHHHHHHhccCCCcchHHHH
Q 025778 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLA 162 (248)
Q Consensus 83 ~~l~~L~~lL~d~~~~V~K~aI~~~t~lY~~~l~~~a~~~~~~~~~~~~~~~~W~~m~~lK~~Il~~~~d~~n~Gvr~~a 162 (248)
..++.|..+|.+.+..|.|.|.-+..++-. + ++.+....-....+ ..++. ++.+++..+|-.|
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~-------------~--~~~~~~~i~~~G~I-~~Lv~-LL~s~~~~v~~~A 441 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSA-------------R--NPKDQEALWDMGAV-SMLKN-LIHSKHKMIAMGS 441 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHS-------------S--CHHHHHHHHHHTHH-HHHHT-TTTCSSHHHHHHH
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHc-------------C--CHHHHHHHHHCCCH-HHHHH-HHhCCCHHHHHHH
Confidence 467888889998888888888777766521 0 01111111111111 23334 5577888888888
Q ss_pred HHHHhHH
Q 025778 163 LKFLETH 169 (248)
Q Consensus 163 iKF~e~v 169 (248)
..-+..+
T Consensus 442 a~AL~nL 448 (458)
T 3nmz_A 442 AAALRNL 448 (458)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777655
No 103
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=22.87 E-value=99 Score=31.36 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred CchHHhhhHHHHh--ccCCchhHHHHHHHHHHHHHhh---hhhhhhhhHHHHHHH--hhccCChHHHHHHHHhhhhhhHH
Q 025778 41 PSLAAELFPYLVE--LQSSPESLVRKSLIETIEDIGL---KAMEHSSILMPVLLA--FLRDGDSGVAGKSIVCGTNFFCR 113 (248)
Q Consensus 41 p~ll~~~l~~il~--~~~~~~~~vrk~~~~fiee~~~---~~~e~~~~~l~~L~~--lL~d~~~~V~K~aI~~~t~lY~~ 113 (248)
|.+. +++..+++ +..++++.||....+.+..-+. .++++++.+++.+.. -+.+.++.|..+|..++..+.+.
T Consensus 489 p~l~-~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 489 TVLS-QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp CHHH-HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Q ss_pred H
Q 025778 114 V 114 (248)
Q Consensus 114 ~ 114 (248)
+
T Consensus 568 ~ 568 (980)
T 3ibv_A 568 I 568 (980)
T ss_dssp T
T ss_pred h
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=22.01 E-value=1.2e+02 Score=29.23 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=42.5
Q ss_pred hhhHHHHhccCCchhHHHHHHHHHHHHHhhhh--hhhh--hhHHHH-HHHhhccCChHHHHHHHHhhhhh
Q 025778 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKA--MEHS--SILMPV-LLAFLRDGDSGVAGKSIVCGTNF 110 (248)
Q Consensus 46 ~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~--~e~~--~~~l~~-L~~lL~d~~~~V~K~aI~~~t~l 110 (248)
.++| +++--.+++++.|.|.+.-|.+++... ..++ ...+.. +..+|.|.++.|...|.-++.+|
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL 103 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3455 443323677889999999999888521 1111 344544 56678999999988888777665
No 105
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=21.90 E-value=3.6e+02 Score=24.47 Aligned_cols=82 Identities=13% Similarity=0.055 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhh-hhhh----hhHHHHHHHhhccCChHHHH
Q 025778 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHS----SILMPVLLAFLRDGDSGVAG 101 (248)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~-~e~~----~~~l~~L~~lL~d~~~~V~K 101 (248)
.+|...-...+++||++...++.+++-+=+-.++.=.-.+.+.||++...- ++-. ..+...+..-+..+.-.|+.
T Consensus 277 ~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAE 356 (392)
T 2jak_A 277 PQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAE 356 (392)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 456566555668899999999998876422222222234556666665322 2222 33333333334555666666
Q ss_pred HHHHhhh
Q 025778 102 KSIVCGT 108 (248)
Q Consensus 102 ~aI~~~t 108 (248)
||.....
T Consensus 357 rAL~~wn 363 (392)
T 2jak_A 357 RALYYWN 363 (392)
T ss_dssp HHHGGGG
T ss_pred HHHHHhC
Confidence 6655443
No 106
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=21.57 E-value=4.7e+02 Score=24.12 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhccCCchhHHHH--HHHHHHHHHhhh-hhhhhh----hHHHHHHHhhccCChHH
Q 025778 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRK--SLIETIEDIGLK-AMEHSS----ILMPVLLAFLRDGDSGV 99 (248)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~il~~~~~~~~~vrk--~~~~fiee~~~~-~~e~~~----~~l~~L~~lL~d~~~~V 99 (248)
.+|...-...+++||++...++.++|-+ .|-..-.| .+.+.||+++.. .++-.. .+...|..-+..+.-.|
T Consensus 265 ~qL~ycv~qf~eKDp~L~~~vi~~LLk~--WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqV 342 (449)
T 2npp_B 265 PQLAYCVVQFLEKDSTLTEPVVMALLKY--WPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQV 342 (449)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 4566666666789999999999999864 44333344 345666666632 222222 23333333355556666
Q ss_pred HHHHHHhh
Q 025778 100 AGKSIVCG 107 (248)
Q Consensus 100 ~K~aI~~~ 107 (248)
+.+|....
T Consensus 343 AErAL~~w 350 (449)
T 2npp_B 343 AERALYYW 350 (449)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHH
Confidence 66665433
No 107
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=20.43 E-value=4.3e+02 Score=23.31 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhhc-cCCChhHHHHHHHHHH
Q 025778 210 TSEANRMLGTLMDLLQSA-CNLPGSVIITVVNCLN 243 (248)
Q Consensus 210 e~Ea~~lL~~LL~~l~~~-ss~~~~l~~a~lnsL~ 243 (248)
|-.-..+|+.|.+..++. .++- .=...+|+|+
T Consensus 232 E~~~r~fF~~L~~ik~~~~~~lK--~~~~FLnWLa 264 (315)
T 3qml_C 232 ELHTRTFFDTLYNLKKIFKSDIT--INKGFLNWLA 264 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccC--CCHHHHHHHH
Confidence 336677888888877743 2221 1245566665
No 108
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=20.23 E-value=1.6e+02 Score=24.27 Aligned_cols=52 Identities=2% Similarity=0.034 Sum_probs=42.0
Q ss_pred chHHhhhHHHHhccCCchhHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhc
Q 025778 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (248)
Q Consensus 42 ~ll~~~l~~il~~~~~~~~~vrk~~~~fiee~~~~~~e~~~~~l~~L~~lL~ 93 (248)
..++.+|+-+.....|++.-|+|-+.-++.++++++++...+++.....+-.
T Consensus 147 ~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~~l~~ 198 (235)
T 1t06_A 147 SKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKEVGI 198 (235)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHCE
T ss_pred hhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcc
Confidence 3566777755545668888999999999999999999999999987776644
Done!