BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025781
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 23 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSF 82
A S P FL K + L+ DP TD +I W+ G F V+ +FA+++LP FKH+N +SF
Sbjct: 12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 83 VRQLNTYGFRKVATSRW-----------EFCNQMFRKGEKDLLCKIRRR 120
VRQLN YGFRKV EF + F +G++ LL I+R+
Sbjct: 72 VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Query: 26 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQ 85
S P FL K + L++D T+ +I W DG FV+ A+FA++LLP +KH+N +SF+RQ
Sbjct: 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 86 LNTYGFRKVAT----------SRWEFCNQMFRKGEKDLLCKIRRR 120
LN YGF K+ + EF + F++ LL +I+R+
Sbjct: 62 LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNT 88
P F+ K + ++ D + + I W+ G VV F +++LP FKHSNF+SFVRQLN
Sbjct: 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 89 YGFRKVA-----------TSRWEFCNQ 104
YG+ KV SRWEF N+
Sbjct: 73 YGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNT 88
P F+ K + ++ D + + I W+ G VV F +++LP FKHSNF+SFVRQLN
Sbjct: 3 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 89 YGFRKVA-----------TSRWEFCNQ 104
YG+ KV SRWEF N+
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNT 88
P F+ K + ++ D + + I W+ G VV F +++LP FKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 89 YGFRKVA-----------TSRWEFCNQ 104
YG+ KV SRWEF N+
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
Length = 92
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNT 88
P F+ K + + D + + I W+ G VV F +++LP FKHSNF+SFVRQLN
Sbjct: 3 PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 89 YGFRKVA-----------TSRWEFCNQ 104
YG+ KV SRWEF N+
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNT 88
P F+ K + ++ D + + I W+ G VV F +++L FKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 89 YGFRKVA-----------TSRWEFCNQ 104
YG+ KV SRWEF N+
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNT 88
P F+ K + ++ D + + I W+ G VV F +++L FKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 89 YGFRKVA-----------TSRWEFCNQ 104
YG+ KV SRWEF N+
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1 Complexed With Dna
Length = 106
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 38 LIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
L++DP+ + I+W G G F + +P E AR
Sbjct: 21 LLDDPSNSHFIAWTGRGMEFKLIEPEEVAR 50
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D ++ + ISW GDG F + P E AR
Sbjct: 70 FLLE---LLTDKSSQSFISWTGDGWEFKLSDPDEVAR 103
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D + + ISW GDG F + P E AR
Sbjct: 10 FLLE---LLTDKSCQSFISWTGDGWEFKLSDPDEVAR 43
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D + + ISW GDG F + P E AR
Sbjct: 45 FLLE---LLTDKSCQSFISWTGDGWEFKLSDPDEVAR 78
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D + + ISW GDG F + P E AR
Sbjct: 40 FLLE---LLTDKSCQSFISWTGDGWEFKLSDPDEVAR 73
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D + + ISW GDG F + P E AR
Sbjct: 41 FLLE---LLTDKSCQSFISWTGDGWEFKLSDPDEVAR 74
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D + + ISW GDG F + P E AR
Sbjct: 62 FLLE---LLTDKSCQSFISWTGDGWEFKLSDPDEVAR 95
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D + + ISW GDG F + P E AR
Sbjct: 61 FLLE---LLTDKSCQSFISWTGDGWEFKLSDPDEVAR 94
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D + + ISW GDG F + P E AR
Sbjct: 61 FLLE---LLTDKSCQSFISWTGDGWEFKLSDPDEVAR 94
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFAR 67
FLL+ L+ D + + ISW GDG F + P E AR
Sbjct: 21 FLLE---LLTDKSCQSFISWTGDGWEFKLSDPDEVAR 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,169,500
Number of Sequences: 62578
Number of extensions: 223346
Number of successful extensions: 481
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 19
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)