Query 025781
Match_columns 248
No_of_seqs 200 out of 1023
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 2.6E-40 5.7E-45 302.6 8.3 161 25-192 9-172 (304)
2 smart00415 HSF heat shock fact 100.0 5.4E-37 1.2E-41 241.8 7.8 94 27-120 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 4.9E-37 1.1E-41 240.6 5.0 93 30-122 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 6.2E-35 1.3E-39 264.8 6.4 154 23-183 5-168 (282)
5 PF00178 Ets: Ets-domain; Int 96.6 0.0016 3.5E-08 49.8 2.6 59 32-90 5-65 (85)
6 smart00413 ETS erythroblast tr 95.6 0.021 4.5E-07 44.0 4.5 57 34-90 7-65 (87)
7 KOG3806 Predicted transcriptio 92.6 0.21 4.5E-06 43.2 4.8 62 28-89 68-131 (177)
8 KOG4196 bZIP transcription fac 88.3 1.5 3.3E-05 36.1 5.9 38 155-192 82-119 (135)
9 PF02183 HALZ: Homeobox associ 83.7 2.9 6.4E-05 28.2 4.6 29 155-183 13-41 (45)
10 PF00170 bZIP_1: bZIP transcri 82.7 5.5 0.00012 28.2 6.0 35 156-190 28-62 (64)
11 smart00338 BRLZ basic region l 82.6 4.7 0.0001 28.6 5.6 36 156-191 28-63 (65)
12 PF05377 FlaC_arch: Flagella a 79.5 8.8 0.00019 27.1 5.9 38 154-191 7-44 (55)
13 PF14645 Chibby: Chibby family 79.4 4.8 0.0001 32.5 5.2 39 157-195 67-105 (116)
14 cd07429 Cby_like Chibby, a nuc 78.6 5.5 0.00012 31.9 5.3 35 159-193 70-104 (108)
15 PF06005 DUF904: Protein of un 75.2 15 0.00031 27.2 6.4 40 157-196 28-67 (72)
16 PRK13922 rod shape-determining 73.8 8.8 0.00019 34.6 6.0 38 155-192 70-110 (276)
17 PF07407 Seadorna_VP6: Seadorn 71.8 5.9 0.00013 37.7 4.4 29 154-182 32-60 (420)
18 TIGR02894 DNA_bind_RsfA transc 71.5 13 0.00029 31.7 6.1 42 156-197 113-154 (161)
19 TIGR00219 mreC rod shape-deter 70.3 12 0.00025 34.5 6.0 36 156-191 68-107 (283)
20 PF12709 Kinetocho_Slk19: Cent 69.1 18 0.00039 27.9 5.8 36 156-191 51-86 (87)
21 PRK00888 ftsB cell division pr 68.3 22 0.00047 28.0 6.4 38 154-192 34-71 (105)
22 PF02183 HALZ: Homeobox associ 67.3 26 0.00057 23.6 5.7 37 154-190 5-41 (45)
23 PF06005 DUF904: Protein of un 66.5 22 0.00047 26.3 5.6 32 157-188 21-52 (72)
24 PF07412 Geminin: Geminin; In 66.2 24 0.00052 31.2 6.8 30 156-185 120-149 (200)
25 PF04340 DUF484: Protein of un 65.3 22 0.00049 31.1 6.6 18 102-119 17-34 (225)
26 PF04977 DivIC: Septum formati 65.0 23 0.0005 25.3 5.6 27 156-182 26-52 (80)
27 PF02344 Myc-LZ: Myc leucine z 64.3 21 0.00046 22.5 4.3 29 156-184 3-31 (32)
28 PF07716 bZIP_2: Basic region 64.3 18 0.00039 24.7 4.6 27 156-182 27-53 (54)
29 PF10224 DUF2205: Predicted co 63.0 34 0.00074 25.9 6.2 34 155-188 17-50 (80)
30 smart00338 BRLZ basic region l 62.2 21 0.00045 25.2 4.8 32 153-184 32-63 (65)
31 PF08172 CASP_C: CASP C termin 61.8 23 0.00051 32.1 6.1 42 156-197 95-139 (248)
32 TIGR03752 conj_TIGR03752 integ 60.7 24 0.00052 35.0 6.4 23 153-175 72-94 (472)
33 PF00170 bZIP_1: bZIP transcri 59.8 30 0.00066 24.3 5.3 31 154-184 33-63 (64)
34 TIGR02449 conserved hypothetic 59.5 49 0.0011 24.1 6.3 29 155-183 8-36 (65)
35 PF07334 IFP_35_N: Interferon- 58.7 22 0.00048 26.7 4.5 27 157-183 3-29 (76)
36 PF15058 Speriolin_N: Sperioli 58.6 17 0.00038 32.0 4.5 32 154-185 5-36 (200)
37 PF04977 DivIC: Septum formati 55.7 59 0.0013 23.1 6.4 42 155-196 18-62 (80)
38 PRK14127 cell division protein 55.1 36 0.00078 27.2 5.5 40 156-195 32-71 (109)
39 COG3074 Uncharacterized protei 53.9 67 0.0015 24.0 6.2 20 160-179 24-43 (79)
40 PF12269 zf-CpG_bind_C: CpG bi 52.3 68 0.0015 29.1 7.4 43 159-201 27-69 (236)
41 PF07676 PD40: WD40-like Beta 52.2 5.7 0.00012 24.7 0.4 23 38-60 4-26 (39)
42 KOG3119 Basic region leucine z 52.0 51 0.0011 30.1 6.7 43 157-199 218-260 (269)
43 PF11544 Spc42p: Spindle pole 50.7 59 0.0013 24.5 5.6 31 160-190 18-48 (76)
44 PRK14872 rod shape-determining 50.4 35 0.00075 32.5 5.4 29 154-182 57-85 (337)
45 COG3074 Uncharacterized protei 49.7 50 0.0011 24.6 5.0 41 157-197 35-75 (79)
46 PRK14127 cell division protein 49.4 37 0.00081 27.1 4.7 33 153-185 36-68 (109)
47 TIGR02894 DNA_bind_RsfA transc 48.5 60 0.0013 27.8 6.1 31 157-187 107-137 (161)
48 KOG4343 bZIP transcription fac 47.6 21 0.00046 36.1 3.6 24 157-180 312-335 (655)
49 PF08961 DUF1875: Domain of un 47.3 6.3 0.00014 35.4 0.0 28 154-181 136-163 (243)
50 KOG4571 Activating transcripti 46.8 46 0.001 31.1 5.5 36 157-192 251-286 (294)
51 PF04102 SlyX: SlyX; InterPro 45.4 80 0.0017 22.8 5.6 42 154-195 11-52 (69)
52 PF06156 DUF972: Protein of un 45.0 99 0.0022 24.5 6.5 43 154-196 15-57 (107)
53 PRK15422 septal ring assembly 44.4 85 0.0018 23.8 5.6 25 173-197 51-75 (79)
54 PF04899 MbeD_MobD: MbeD/MobD 44.2 1.1E+02 0.0025 22.4 6.3 42 154-195 28-69 (70)
55 PF07989 Microtub_assoc: Micro 43.4 87 0.0019 23.2 5.6 34 156-189 38-71 (75)
56 PF14775 NYD-SP28_assoc: Sperm 43.2 54 0.0012 23.3 4.3 29 167-195 32-60 (60)
57 PRK00888 ftsB cell division pr 42.4 68 0.0015 25.2 5.2 42 155-196 28-72 (105)
58 PRK10884 SH3 domain-containing 42.2 81 0.0017 27.8 6.2 29 89-117 65-95 (206)
59 PRK10803 tol-pal system protei 42.1 73 0.0016 28.9 6.1 43 154-196 61-103 (263)
60 PF14077 WD40_alt: Alternative 41.7 36 0.00079 23.3 3.0 33 164-196 14-46 (48)
61 PRK10884 SH3 domain-containing 41.5 96 0.0021 27.4 6.6 26 161-186 132-157 (206)
62 TIGR00219 mreC rod shape-deter 41.0 84 0.0018 28.9 6.4 29 159-187 64-92 (283)
63 TIGR02209 ftsL_broad cell divi 40.1 1.4E+02 0.003 21.7 6.4 27 156-182 33-59 (85)
64 PF05064 Nsp1_C: Nsp1-like C-t 40.0 50 0.0011 26.3 4.2 43 154-196 57-99 (116)
65 KOG3863 bZIP transcription fac 39.9 54 0.0012 33.6 5.3 82 104-196 479-560 (604)
66 PRK10963 hypothetical protein; 39.2 1.1E+02 0.0023 27.0 6.5 18 102-119 14-31 (223)
67 PF06156 DUF972: Protein of un 37.8 91 0.002 24.7 5.3 24 157-180 32-55 (107)
68 PF07407 Seadorna_VP6: Seadorn 37.7 59 0.0013 31.1 4.8 45 150-194 35-88 (420)
69 PF10473 CENP-F_leu_zip: Leuci 37.4 1.1E+02 0.0024 25.5 6.0 43 154-196 66-108 (140)
70 PRK10722 hypothetical protein; 36.7 81 0.0018 28.8 5.4 34 156-189 167-204 (247)
71 PF04728 LPP: Lipoprotein leuc 36.7 59 0.0013 23.1 3.6 19 159-177 15-33 (56)
72 KOG4196 bZIP transcription fac 36.4 1.3E+02 0.0028 25.0 6.0 33 157-189 77-109 (135)
73 PF05377 FlaC_arch: Flagella a 36.3 1.5E+02 0.0034 20.9 6.1 35 155-193 15-49 (55)
74 PF11382 DUF3186: Protein of u 36.3 1E+02 0.0022 28.7 6.2 41 155-195 33-73 (308)
75 PF12325 TMF_TATA_bd: TATA ele 34.7 1.7E+02 0.0037 23.7 6.5 28 157-184 33-60 (120)
76 PRK13169 DNA replication intia 34.6 1.8E+02 0.0038 23.3 6.5 40 155-194 16-55 (110)
77 PF13874 Nup54: Nucleoporin co 34.5 1.8E+02 0.0039 23.8 6.8 38 154-191 51-88 (141)
78 PF12808 Mto2_bdg: Micro-tubul 33.4 84 0.0018 21.9 3.9 26 157-182 25-50 (52)
79 PF05812 Herpes_BLRF2: Herpesv 33.2 68 0.0015 26.1 3.9 26 156-181 5-30 (118)
80 smart00340 HALZ homeobox assoc 32.9 1.3E+02 0.0027 20.3 4.4 26 157-182 8-33 (44)
81 KOG4571 Activating transcripti 32.9 1.3E+02 0.0028 28.2 6.2 35 154-188 255-289 (294)
82 PRK13169 DNA replication intia 32.6 1.2E+02 0.0027 24.2 5.3 24 157-180 32-55 (110)
83 KOG0837 Transcriptional activa 32.6 99 0.0021 28.6 5.2 41 156-196 229-269 (279)
84 PF12325 TMF_TATA_bd: TATA ele 32.5 2.3E+02 0.005 22.9 7.0 28 157-184 19-46 (120)
85 PRK13923 putative spore coat p 32.3 1.7E+02 0.0036 25.3 6.3 44 155-198 112-155 (170)
86 PF13591 MerR_2: MerR HTH fami 31.6 35 0.00076 25.5 1.9 70 80-174 14-83 (84)
87 TIGR03752 conj_TIGR03752 integ 31.5 1.2E+02 0.0025 30.3 6.0 28 155-182 67-94 (472)
88 KOG3805 ERG and related ETS tr 31.5 78 0.0017 30.0 4.5 61 32-92 276-339 (361)
89 PF14197 Cep57_CLD_2: Centroso 30.9 85 0.0018 22.9 3.8 23 158-180 44-66 (69)
90 PHA03162 hypothetical protein; 30.8 1.3E+02 0.0028 25.0 5.2 24 156-179 15-38 (135)
91 PF10212 TTKRSYEDQ: Predicted 30.8 79 0.0017 31.9 4.7 45 157-201 458-502 (518)
92 PRK04406 hypothetical protein; 30.4 2.3E+02 0.0049 21.0 7.4 40 154-193 18-57 (75)
93 PF10224 DUF2205: Predicted co 30.3 2.2E+02 0.0048 21.5 6.0 35 155-189 31-65 (80)
94 KOG3119 Basic region leucine z 30.3 95 0.0021 28.4 4.9 27 157-183 225-251 (269)
95 PF04728 LPP: Lipoprotein leuc 30.1 2E+02 0.0044 20.4 6.4 33 154-186 17-49 (56)
96 PF04325 DUF465: Protein of un 29.9 1E+02 0.0022 20.7 3.8 23 160-182 26-48 (49)
97 PRK15422 septal ring assembly 29.9 2.3E+02 0.0049 21.5 5.9 23 157-179 21-43 (79)
98 PF06632 XRCC4: DNA double-str 29.5 1.4E+02 0.0029 28.5 5.9 28 156-183 139-166 (342)
99 PHA03155 hypothetical protein; 29.3 80 0.0017 25.6 3.6 25 155-179 9-33 (115)
100 PF08606 Prp19: Prp19/Pso4-lik 28.5 2.5E+02 0.0054 20.8 6.4 40 157-196 18-57 (70)
101 PF08675 RNA_bind: RNA binding 28.2 52 0.0011 25.4 2.3 27 45-71 34-60 (87)
102 PHA00728 hypothetical protein 28.1 84 0.0018 25.9 3.6 22 160-181 4-25 (151)
103 PRK09413 IS2 repressor TnpA; R 28.1 1.3E+02 0.0029 23.6 4.9 28 156-183 73-100 (121)
104 PF14916 CCDC92: Coiled-coil d 28.0 1.3E+02 0.0029 21.5 4.3 34 156-189 5-42 (60)
105 PRK13922 rod shape-determining 27.9 1.8E+02 0.0039 26.1 6.2 30 158-187 66-95 (276)
106 COG2433 Uncharacterized conser 27.3 1.7E+02 0.0038 30.2 6.4 41 156-196 424-464 (652)
107 PF02996 Prefoldin: Prefoldin 27.2 2.1E+02 0.0046 22.0 5.8 43 153-195 76-118 (120)
108 PHA02109 hypothetical protein 27.1 2E+02 0.0044 25.2 6.0 37 160-196 192-228 (233)
109 PF10883 DUF2681: Protein of u 27.1 1.8E+02 0.0038 22.4 5.1 41 157-197 19-59 (87)
110 PF15456 Uds1: Up-regulated Du 27.0 1.1E+02 0.0024 24.9 4.2 26 160-185 21-46 (124)
111 PF10883 DUF2681: Protein of u 27.0 2.9E+02 0.0063 21.2 6.3 24 157-180 26-49 (87)
112 TIGR02449 conserved hypothetic 27.0 2.5E+02 0.0054 20.4 6.3 32 155-186 15-46 (65)
113 PF03980 Nnf1: Nnf1 ; InterPr 26.9 1.1E+02 0.0024 23.6 4.1 28 155-182 81-108 (109)
114 cd00584 Prefoldin_alpha Prefol 26.4 2.7E+02 0.0058 21.9 6.4 42 153-194 86-127 (129)
115 PF15369 KIAA1328: Uncharacter 26.4 2E+02 0.0043 27.4 6.3 45 155-199 34-81 (328)
116 PRK00295 hypothetical protein; 26.2 2.5E+02 0.0055 20.2 7.7 41 154-194 12-52 (68)
117 PF04508 Pox_A_type_inc: Viral 26.1 1.1E+02 0.0024 17.9 2.9 20 162-181 2-21 (23)
118 PRK01203 prefoldin subunit alp 25.8 3.3E+02 0.0071 22.5 6.8 40 157-196 3-42 (130)
119 PF04999 FtsL: Cell division p 25.7 1.2E+02 0.0026 22.8 4.1 26 156-181 44-69 (97)
120 KOG2196 Nuclear porin [Nuclear 25.6 2.2E+02 0.0049 26.0 6.2 47 154-200 113-159 (254)
121 PF06216 RTBV_P46: Rice tungro 25.5 1.2E+02 0.0025 28.2 4.5 38 155-192 79-116 (389)
122 cd00890 Prefoldin Prefoldin is 25.3 2.9E+02 0.0063 21.3 6.4 42 153-194 86-127 (129)
123 PF05529 Bap31: B-cell recepto 25.3 1.6E+02 0.0036 24.9 5.2 33 156-188 156-188 (192)
124 PF13942 Lipoprotein_20: YfhG 25.2 1.6E+02 0.0035 25.6 5.0 31 159-189 128-158 (179)
125 PF04111 APG6: Autophagy prote 25.2 2.3E+02 0.0049 26.5 6.5 27 157-183 60-86 (314)
126 PF12017 Tnp_P_element: Transp 25.0 2.7E+02 0.0059 25.1 6.7 30 156-185 13-42 (236)
127 PRK02119 hypothetical protein; 24.9 2.8E+02 0.0061 20.3 7.5 39 155-193 17-55 (73)
128 PRK13729 conjugal transfer pil 24.7 1.9E+02 0.0041 28.9 6.1 40 155-194 77-116 (475)
129 KOG0977 Nuclear envelope prote 24.7 1.1E+02 0.0024 31.0 4.6 30 154-183 162-191 (546)
130 PF13118 DUF3972: Protein of u 24.5 2.7E+02 0.0058 22.9 6.0 33 157-189 81-113 (126)
131 COG4026 Uncharacterized protei 24.4 2.5E+02 0.0055 25.6 6.3 17 165-181 146-162 (290)
132 KOG4497 Uncharacterized conser 24.4 81 0.0017 30.5 3.3 34 30-63 162-199 (447)
133 PF04880 NUDE_C: NUDE protein, 24.3 32 0.0007 29.5 0.6 20 158-177 28-47 (166)
134 PF14645 Chibby: Chibby family 24.1 1.5E+02 0.0034 23.7 4.5 24 155-178 72-95 (116)
135 COG1730 GIM5 Predicted prefold 24.0 3E+02 0.0066 23.0 6.4 44 153-196 93-136 (145)
136 PF08227 DASH_Hsk3: DASH compl 23.3 2.4E+02 0.0053 19.0 6.0 40 155-195 3-42 (45)
137 TIGR03689 pup_AAA proteasome A 23.2 2.3E+02 0.005 28.5 6.5 43 157-199 4-46 (512)
138 PF14662 CCDC155: Coiled-coil 22.7 1.9E+02 0.0042 25.4 5.1 31 156-186 83-113 (193)
139 cd00068 GGL G protein gamma su 22.3 1.4E+02 0.003 20.8 3.5 33 164-196 2-38 (57)
140 PRK02793 phi X174 lysis protei 21.9 3.2E+02 0.007 19.9 7.5 39 155-193 16-54 (72)
141 PF07106 TBPIP: Tat binding pr 21.8 1.6E+02 0.0034 24.5 4.4 27 156-182 81-107 (169)
142 PRK00736 hypothetical protein; 21.7 3.2E+02 0.0069 19.7 7.6 40 154-193 12-51 (68)
143 PF10506 MCC-bdg_PDZ: PDZ doma 21.7 3.3E+02 0.0071 19.9 5.8 36 159-194 3-38 (67)
144 PF14420 Clr5: Clr5 domain 21.7 40 0.00087 23.2 0.6 16 78-93 39-54 (54)
145 PF13974 YebO: YebO-like prote 21.6 2.4E+02 0.0052 21.4 4.8 24 168-191 26-49 (80)
146 PF11577 NEMO: NF-kappa-B esse 21.5 3.3E+02 0.0072 19.9 5.4 13 155-167 7-19 (68)
147 PF08172 CASP_C: CASP C termin 21.5 3.2E+02 0.007 24.7 6.6 40 154-193 79-118 (248)
148 PF10211 Ax_dynein_light: Axon 21.5 2.2E+02 0.0047 24.6 5.3 35 156-190 122-156 (189)
149 PRK03947 prefoldin subunit alp 21.2 3.9E+02 0.0085 21.3 6.5 44 153-196 93-136 (140)
150 KOG4005 Transcription factor X 21.2 1.9E+02 0.0042 26.5 5.0 31 157-187 93-123 (292)
151 COG2919 Septum formation initi 21.0 3.5E+02 0.0076 21.4 6.0 28 156-183 59-86 (117)
152 PF11932 DUF3450: Protein of u 21.0 3.3E+02 0.0071 24.2 6.5 26 157-182 59-84 (251)
153 PF11853 DUF3373: Protein of u 20.9 85 0.0018 31.4 2.9 22 162-183 32-53 (489)
154 PF11853 DUF3373: Protein of u 20.7 88 0.0019 31.3 2.9 35 158-193 22-56 (489)
155 PF15294 Leu_zip: Leucine zipp 20.5 2E+02 0.0044 26.7 5.1 31 157-187 128-158 (278)
156 PF02252 PA28_beta: Proteasome 20.2 1.2E+02 0.0025 25.5 3.2 35 162-196 7-41 (150)
157 PF08826 DMPK_coil: DMPK coile 20.2 3.4E+02 0.0073 19.4 6.6 39 156-194 13-51 (61)
158 KOG1510 RNA polymerase II holo 20.2 3.2E+02 0.007 22.8 5.7 35 161-195 91-125 (139)
159 PRK14011 prefoldin subunit alp 20.1 2.3E+02 0.0051 23.5 5.0 41 155-195 4-44 (144)
160 cd00266 MADS_SRF_like SRF-like 20.1 63 0.0014 24.2 1.4 47 31-79 27-75 (83)
161 PF06305 DUF1049: Protein of u 20.1 1.2E+02 0.0026 21.1 2.8 22 165-186 45-66 (68)
162 PF07558 Shugoshin_N: Shugoshi 20.0 1.4E+02 0.003 20.0 2.9 24 154-177 21-44 (46)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=2.6e-40 Score=302.64 Aligned_cols=161 Identities=45% Similarity=0.749 Sum_probs=129.5
Q ss_pred cCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeec--CCcceee
Q 025781 25 KSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA--TSRWEFC 102 (248)
Q Consensus 25 ~~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~--~~~~eF~ 102 (248)
.+.+++|+.|||.||+||++++||+|+++|.+|||||+.+|++.+||+||||+||+|||||||+||||||. ++.|||+
T Consensus 9 ~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~ 88 (304)
T KOG0627|consen 9 ASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFS 88 (304)
T ss_pred cCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeec
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCCccCCchhhhhcccccCCcccchhh-hhhhcccCCCccccccccCCcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 103 NQMFRKGEKDLLCKIRRRKAWANRQQA-ATAAATQQESHDEDQRSSSSTSSLSEYNTLRDENKRLKKENGNLSSELVSMK 181 (248)
Q Consensus 103 h~~F~rg~~~lL~~IkRk~~~~~~~~~-~~~~~~~~~s~~~~q~~s~~~~~~~~~~~L~~e~~~LkkEn~~L~~El~~lr 181 (248)
|++|+||+++||++|+||++....... ..+.... ...............+..+...|++++..|+.|+.+|+
T Consensus 89 n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr 161 (304)
T KOG0627|consen 89 NPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFE-------RQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELR 161 (304)
T ss_pred ChhHhcChHHHHHHHhhhccccCCcccccCcchhh-------hhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998665431 0000000 00000011122345677888999999999999999998
Q ss_pred HHHHHHHHHHH
Q 025781 182 RKCKELLDLVT 192 (248)
Q Consensus 182 ~k~~~l~~~vs 192 (248)
+..+.+-..+.
T Consensus 162 ~~~~~~~~~~~ 172 (304)
T KOG0627|consen 162 QQQDALRATIQ 172 (304)
T ss_pred hhHHHHHHHHH
Confidence 66555444444
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=5.4e-37 Score=241.85 Aligned_cols=94 Identities=60% Similarity=1.181 Sum_probs=90.8
Q ss_pred CCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeecC----------
Q 025781 27 TPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVAT---------- 96 (248)
Q Consensus 27 ~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~---------- 96 (248)
.+|.|+.|||+||+||++++||+|+++|++|+|+|+..|.+.|||+||+|++|+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -CcceeecCCccCCchhhhhccccc
Q 025781 97 -SRWEFCNQMFRKGEKDLLCKIRRR 120 (248)
Q Consensus 97 -~~~eF~h~~F~rg~~~lL~~IkRk 120 (248)
+.|+|+|++|+||+|+||..|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 679999999999999999999996
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=4.9e-37 Score=240.62 Aligned_cols=93 Identities=54% Similarity=1.063 Sum_probs=81.7
Q ss_pred chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeecCCc---------ce
Q 025781 30 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WE 100 (248)
Q Consensus 30 ~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~~~---------~e 100 (248)
.||.|||+||+||+++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+.... |+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 499999999999999999999999999999999999999999999999999999999999999998643 89
Q ss_pred eecCCccCCchhhhhcccccCC
Q 025781 101 FCNQMFRKGEKDLLCKIRRRKA 122 (248)
Q Consensus 101 F~h~~F~rg~~~lL~~IkRk~~ 122 (248)
|+|++|+||+|++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=100.00 E-value=6.2e-35 Score=264.81 Aligned_cols=154 Identities=38% Similarity=0.620 Sum_probs=117.5
Q ss_pred hhcCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeec-C-----
Q 025781 23 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-T----- 96 (248)
Q Consensus 23 ~~~~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-~----- 96 (248)
.+..+++.|+.|||.||++|++.++|+|+++|+||||+|++.|.+.|||+||||+||+|||||||+||||||. .
T Consensus 5 ~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~ 84 (282)
T COG5169 5 SRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRS 84 (282)
T ss_pred cCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCccccc
Confidence 3455678999999999999999999999999999999999999999999999999999999999999999998 2
Q ss_pred ----CcceeecCCccCCchhhhhcccccCCcccchhhhhhhcccCCCccccccccCCcCchhhhhhHHHHHHHHHHHHHH
Q 025781 97 ----SRWEFCNQMFRKGEKDLLCKIRRRKAWANRQQAATAAATQQESHDEDQRSSSSTSSLSEYNTLRDENKRLKKENGN 172 (248)
Q Consensus 97 ----~~~eF~h~~F~rg~~~lL~~IkRk~~~~~~~~~~~~~~~~~~s~~~~q~~s~~~~~~~~~~~L~~e~~~LkkEn~~ 172 (248)
..|+|.|++|++|..++|+.|+|++..+........ +.+..+. ....+.......+..++..|...++.
T Consensus 85 ~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~------s~~~~~~-~~~~~~i~~~~~~~~~~S~l~~~~~~ 157 (282)
T COG5169 85 YYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNE------SKDAMMN-IEVENIILPQSELYNSLSSLSNVNQT 157 (282)
T ss_pred ccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCC------CCccccc-hhhhhhhchhcccCcchhHHhhhhHH
Confidence 249999999999999999999998876643221100 0000000 00011112234455666777777777
Q ss_pred HHHHHHHHHHH
Q 025781 173 LSSELVSMKRK 183 (248)
Q Consensus 173 L~~El~~lr~k 183 (248)
++..+..++.-
T Consensus 158 ~~~~~~~lk~~ 168 (282)
T COG5169 158 LLLYLNELKEY 168 (282)
T ss_pred Hhhhhccccch
Confidence 77777777654
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=96.58 E-value=0.0016 Score=49.78 Aligned_cols=59 Identities=27% Similarity=0.441 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCCCCCceEEcC-CCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhcccc
Q 025781 32 LLKTYMLIEDPATDNVISWNG-DGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYG 90 (248)
Q Consensus 32 l~KL~~ml~d~~~~~iI~W~~-~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 90 (248)
..=|.++|.|+++.++|+|.+ .+.-|.|.||+++++---- +.-..-+|.++-|-|..|.
T Consensus 5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence 344678999999999999999 9999999999999873221 2234567899999998764
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=95.61 E-value=0.021 Score=43.97 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=44.5
Q ss_pred HHHHhhcCCCCCCceEEcC-CCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhcccc
Q 025781 34 KTYMLIEDPATDNVISWNG-DGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYG 90 (248)
Q Consensus 34 KL~~ml~d~~~~~iI~W~~-~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 90 (248)
=|.++|.||++.++|+|.+ ++.-|.+.|+++.++--=. +-=..-+|..+-|-|..|-
T Consensus 7 FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 7 FLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998 6889999999988874222 2223567889999987764
No 7
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=92.61 E-value=0.21 Score=43.20 Aligned_cols=62 Identities=26% Similarity=0.413 Sum_probs=46.1
Q ss_pred CCchHHHHHHhhcCCCCCCceEEcC-CCCeEEEeCchhhhhhhccC-CCCCCChhhHHhhhccc
Q 025781 28 PPPFLLKTYMLIEDPATDNVISWNG-DGTGFVVWQPAEFARDLLPT-LFKHSNFSSFVRQLNTY 89 (248)
Q Consensus 28 ~~~Fl~KL~~ml~d~~~~~iI~W~~-~G~sFvI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~Y 89 (248)
+-....=|-++|.|+++.++|+|.. +|--|.+.||++-++-.=-+ -=.+-||.-.-|-|..|
T Consensus 68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 3344455567889999999999999 78899999999998844322 22356777777877765
No 8
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=88.25 E-value=1.5 Score=36.13 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=33.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
....|.++++.|+.||..+..|+..++.+|++|+.+.-
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45678899999999999999999999999999998764
No 9
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.68 E-value=2.9 Score=28.18 Aligned_cols=29 Identities=41% Similarity=0.656 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
.+..|..+++.|++||..|..|+..++.+
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666776666666666544
No 10
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=82.68 E-value=5.5 Score=28.16 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
...|..++..|..+|..|..++..|+..+..|..-
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888888888888888888888877653
No 11
>smart00338 BRLZ basic region leucin zipper.
Probab=82.62 E-value=4.7 Score=28.57 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~v 191 (248)
...|..++..|..+|..|..++..|+..+..|-+.+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788888888888888888888888887776544
No 12
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=79.48 E-value=8.8 Score=27.15 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~v 191 (248)
.....+...+..+++||+.|..++..+.+..+.|+.+-
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888999999999999999998887766543
No 13
>PF14645 Chibby: Chibby family
Probab=79.44 E-value=4.8 Score=32.47 Aligned_cols=39 Identities=38% Similarity=0.463 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
.....++.+|+++|..|+.|-+.++-+++=|+++++-..
T Consensus 67 ~~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtett 105 (116)
T PF14645_consen 67 TADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETT 105 (116)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578889999999999999999999999999998443
No 14
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=78.63 E-value=5.5 Score=31.89 Aligned_cols=35 Identities=37% Similarity=0.389 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 159 LRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 159 L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
-..++.+||+++..|..|=+.++-|++-|+++++-
T Consensus 70 ~~~e~~rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 70 SGREVLRLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999874
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.22 E-value=15 Score=27.24 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..|..++..|..+|..|..|..++++.++....-|..+++
T Consensus 28 eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 28 EELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445666666777777766666665555443
No 16
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.83 E-value=8.8 Score=34.64 Aligned_cols=38 Identities=34% Similarity=0.423 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSM---KRKCKELLDLVT 192 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~l---r~k~~~l~~~vs 192 (248)
.+..+.+||++|++|+..|..++..+ +..+++|.+++.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778889999999999998888844 455555555554
No 17
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=71.83 E-value=5.9 Score=37.67 Aligned_cols=29 Identities=41% Similarity=0.507 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
.....|.+||.+||+||..|..||.++..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45578889999999999999999888854
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.50 E-value=13 Score=31.73 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANM 197 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~ 197 (248)
...|..+|+.|.+|+..|.+++..+++.|..|+..|.+-...
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777777777777788888887765443
No 19
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=70.29 E-value=12 Score=34.53 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVS----MKRKCKELLDLV 191 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~----lr~k~~~l~~~v 191 (248)
+..|.+||++||+|+..|..++.. +++.+++|..+|
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677888888877766555554 444455544443
No 20
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=69.10 E-value=18 Score=27.89 Aligned_cols=36 Identities=39% Similarity=0.572 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~v 191 (248)
...|..++..|.+|+..|..++...+..-+.|+.+|
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888888888888888888887777777665
No 21
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.31 E-value=22 Score=28.02 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=26.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
.....+..+++.|+.+|..|..|+..++... ..++-+.
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~-dyiEe~A 71 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ-EAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH-HHHHHHH
Confidence 3456677788888888888888888887643 3344334
No 22
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.33 E-value=26 Score=23.55 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
..+..|-...+.|+.++..|..|...++.....|-..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777778888888777777777766665543
No 23
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.53 E-value=22 Score=26.32 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELL 188 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~ 188 (248)
..|..+++.|+.+|..|..+-..+++.++++.
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554
No 24
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=66.18 E-value=24 Score=31.18 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
+..-..||+.|.++...+..|++.|++.+.
T Consensus 120 L~eaL~ENe~Lh~~ie~~~eEi~~lk~en~ 149 (200)
T PF07412_consen 120 LEEALEENEKLHKEIEQKDEEIAKLKEENE 149 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457888899888888888888887644
No 25
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=65.27 E-value=22 Score=31.11 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred ecCCccCCchhhhhcccc
Q 025781 102 CNQMFRKGEKDLLCKIRR 119 (248)
Q Consensus 102 ~h~~F~rg~~~lL~~IkR 119 (248)
.||.|-..+|+||..|+=
T Consensus 17 ~~PdFf~~~~~ll~~l~~ 34 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRL 34 (225)
T ss_dssp ------------------
T ss_pred hCcHHHHhCHHHHHHcCC
Confidence 699999999999998874
No 26
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.97 E-value=23 Score=25.30 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
...|..+++.|+.+|..|..|+..++.
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555555555555555555533
No 27
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=64.34 E-value=21 Score=22.46 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
...|..+.+.|++..+.|..-|..|+..|
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35677888888888888888887777554
No 28
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=64.25 E-value=18 Score=24.74 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
...|..++..|..+|..|..++..|+.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777888888888888888877764
No 29
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=62.96 E-value=34 Score=25.90 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELL 188 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~ 188 (248)
....|+.++..|+.....|+..+...+..|++|-
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~ 50 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLE 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666655544
No 30
>smart00338 BRLZ basic region leucin zipper.
Probab=62.17 E-value=21 Score=25.19 Aligned_cols=32 Identities=38% Similarity=0.428 Sum_probs=25.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
......|..+|..|+.+...|..|+..++..+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888888888888888888765
No 31
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.76 E-value=23 Score=32.10 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcc
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLD---LVTKYANM 197 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~---~vs~~~~~ 197 (248)
...|++|+.+++.+...|.+|+..||.-+-+|++ +|+.|...
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 4778999999999999999999999999888885 77777753
No 32
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.72 E-value=24 Score=35.02 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=16.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 025781 153 LSEYNTLRDENKRLKKENGNLSS 175 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~ 175 (248)
...++.|..+|+.|++||+.|.+
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777765
No 33
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.76 E-value=30 Score=24.28 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=20.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
.....|..++..|+.++..|..++..|+...
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456667777777777777777777776543
No 34
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.54 E-value=49 Score=24.13 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
....|....++|+.||..|..++..++..
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666555555544
No 35
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=58.73 E-value=22 Score=26.74 Aligned_cols=27 Identities=41% Similarity=0.585 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|..|+.+|+++.+.|..||..+++.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777777766654
No 36
>PF15058 Speriolin_N: Speriolin N terminus
Probab=58.62 E-value=17 Score=31.96 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
..|..|..++++|-+||+.|++.|.-+|+.|+
T Consensus 5 ~~yeGlrhqierLv~ENeeLKKlVrLirEN~e 36 (200)
T PF15058_consen 5 TNYEGLRHQIERLVRENEELKKLVRLIRENHE 36 (200)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35778889999999999999999988887654
No 37
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=55.73 E-value=59 Score=23.08 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhc
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKEL---LDLVTKYAN 196 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l---~~~vs~~~~ 196 (248)
.+..+..++..|+++...+..|...+++..+.+ -++|.+++.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345667777777777777777777777777777 345554444
No 38
>PRK14127 cell division protein GpsB; Provisional
Probab=55.13 E-value=36 Score=27.24 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
+..+..+.+.|-+|+..|..|+.+++.+..++...+..+.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3556667777777777777777777777777777666553
No 39
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.90 E-value=67 Score=23.95 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025781 160 RDENKRLKKENGNLSSELVS 179 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~ 179 (248)
.-+++.||.+|..|.+|+..
T Consensus 24 QmEieELKEknn~l~~e~q~ 43 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHH
Confidence 33444444444444444443
No 40
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=52.28 E-value=68 Score=29.08 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 025781 159 LRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDNDD 201 (248)
Q Consensus 159 L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~~~~ 201 (248)
-...++.+++++...+.+|..|.++++.|..+|.+......++
T Consensus 27 ~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~~~~~~ 69 (236)
T PF12269_consen 27 NRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQFTVDQ 69 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 3456778999999999999999999999999999766554443
No 41
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=52.16 E-value=5.7 Score=24.74 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=16.2
Q ss_pred hhcCCCCCCceEEcCCCCeEEEe
Q 025781 38 LIEDPATDNVISWNGDGTGFVVW 60 (248)
Q Consensus 38 ml~d~~~~~iI~W~~~G~sFvI~ 60 (248)
+++.+..+....|++||+.++..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45666667778999999988764
No 42
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=51.96 E-value=51 Score=30.13 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDN 199 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~~ 199 (248)
..+...+..|.+||+.|..++..|++....+.+.+..|.....
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 4556677779999999999999999999998888887776443
No 43
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.73 E-value=59 Score=24.46 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 160 RDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
.+|+.+|..-...|...|.++...+..|...
T Consensus 18 ~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~ 48 (76)
T PF11544_consen 18 QEEIDRLNILVGSLRGKLIKYTELNKKLQDQ 48 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444443
No 44
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=50.37 E-value=35 Score=32.52 Aligned_cols=29 Identities=31% Similarity=0.208 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
..+..|..||++|++||..|..++.+++.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~ 85 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEE 85 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998888663
No 45
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.73 E-value=50 Score=24.64 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANM 197 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~ 197 (248)
+.|.++.+.++..+.+|.+|-..+++.+..-.+-|..+++.
T Consensus 35 n~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 35 NSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555556566666666666666666665555555544443
No 46
>PRK14127 cell division protein GpsB; Provisional
Probab=49.39 E-value=37 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.503 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
...+..|..++..|+.++..|..+|..++.+..
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346777888888888888888888888877654
No 47
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.51 E-value=60 Score=27.79 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
..|..++..|+.+|..|..|+..+.+++..+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544433
No 48
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=47.57 E-value=21 Score=36.07 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSM 180 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~l 180 (248)
+.|..|++.||+||.+|.++|..+
T Consensus 312 q~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 312 QALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445556666666666666555544
No 49
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=47.30 E-value=6.3 Score=35.43 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMK 181 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr 181 (248)
.....|..+|++|++||..|..|-+++.
T Consensus 136 rlVe~L~aeNErLr~EnkqL~ae~arL~ 163 (243)
T PF08961_consen 136 RLVEFLLAENERLRRENKQLKAENARLL 163 (243)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778899999999999988888874
No 50
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=46.82 E-value=46 Score=31.07 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
..|..|++.|.++|..|+.++..|.+.+.-|-++|.
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777666666554
No 51
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.35 E-value=80 Score=22.78 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
..++.+.+.++.|-......+++|.+|++.+..|..-|....
T Consensus 11 ~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 11 IKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666766666667777777776666666665544
No 52
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.02 E-value=99 Score=24.50 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..+..|..++..||.....|..|=+.|+-.++.|...|.....
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777777777777777777777777777777766655
No 53
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.41 E-value=85 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 025781 173 LSSELVSMKRKCKELLDLVTKYANM 197 (248)
Q Consensus 173 L~~El~~lr~k~~~l~~~vs~~~~~ 197 (248)
|.+|...+++.++.-.+-|..+++.
T Consensus 51 L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 51 LERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555443
No 54
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=44.22 E-value=1.1e+02 Score=22.43 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
..++.|......-++++..|...+..+.++.+.|-..|.++.
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356677777777777888888888888877777777766653
No 55
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=43.36 E-value=87 Score=23.21 Aligned_cols=34 Identities=35% Similarity=0.291 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
...+..+|..|+-++..|.+|+...++...++-.
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777766655543
No 56
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=43.23 E-value=54 Score=23.29 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 167 KKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 167 kkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
-.+...|.+|...|++++.+|..+|..|+
T Consensus 32 L~~R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 32 LLDRAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34666777888888888999988888774
No 57
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=42.44 E-value=68 Score=25.18 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhc
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLD---LVTKYAN 196 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~---~vs~~~~ 196 (248)
.+..+..++..+++++..|..+-..|+.+.+.|-+ +|.....
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 34566666666777777666666666666666632 4444444
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.19 E-value=81 Score=27.83 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=17.7
Q ss_pred ccceeecC--CcceeecCCccCCchhhhhcc
Q 025781 89 YGFRKVAT--SRWEFCNQMFRKGEKDLLCKI 117 (248)
Q Consensus 89 YGF~Kv~~--~~~eF~h~~F~rg~~~lL~~I 117 (248)
.||.+|.. +.--|.|..|....|..-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 46788763 344577777766666554433
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.14 E-value=73 Score=28.89 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..+..|..|+.+|+-+++.+.-+|..|++++.+++.-|.+.+.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888889999999999999988888876665544
No 60
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=41.65 E-value=36 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.426 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 164 KRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 164 ~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
++|+-....|..|+..+|+-+..|++|=++++-
T Consensus 14 e~l~vrv~eLEeEV~~LrKINrdLfdFSt~iiT 46 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKINRDLFDFSTRIIT 46 (48)
T ss_pred chheeeHHHHHHHHHHHHHHhHHHHhhhhhhcc
Confidence 455666666777778888888888888777653
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.48 E-value=96 Score=27.35 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 161 DENKRLKKENGNLSSELVSMKRKCKE 186 (248)
Q Consensus 161 ~e~~~LkkEn~~L~~El~~lr~k~~~ 186 (248)
+.+..|+.+|..|.+|+..++.+...
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555444433
No 62
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=41.03 E-value=84 Score=28.86 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 159 LRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 159 L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
-...+..|++||+.|..|+..++++.+..
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~ 92 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQLEIL 92 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778999999999999886655443
No 63
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=40.12 E-value=1.4e+02 Score=21.70 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
.+.+..+++.|+.||..|..|+..+..
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345555666666666666666665554
No 64
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=40.01 E-value=50 Score=26.29 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..+..|..++..++.....|.++|..+..++..|-.+|..|=.
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~ 99 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEK 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999998888876644
No 65
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=39.95 E-value=54 Score=33.58 Aligned_cols=82 Identities=23% Similarity=0.252 Sum_probs=46.7
Q ss_pred CCccCCchhhhhcccccCCcccchhhhhhhcccCCCccccccccCCcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 104 QMFRKGEKDLLCKIRRRKAWANRQQAATAAATQQESHDEDQRSSSSTSSLSEYNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 104 ~~F~rg~~~lL~~IkRk~~~~~~~~~~~~~~~~~~s~~~~q~~s~~~~~~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|..-+..|+..|+||..-+-+.+. +.. .-+.-..........|..+-++|.+|...+.++|-.|+++
T Consensus 479 ~~lte~QLslIrDIRRRgKNkvAAQn----CRK-------RKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqq 547 (604)
T KOG3863|consen 479 YKLTEEQLSLIRDIRRRGKNKVAAQN----CRK-------RKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQ 547 (604)
T ss_pred cccCHHHHHHhhccccccccchhccc----hhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678899999998543322110 000 0000011122344556666666777777777778888888
Q ss_pred HHHHHHHHHHhhc
Q 025781 184 CKELLDLVTKYAN 196 (248)
Q Consensus 184 ~~~l~~~vs~~~~ 196 (248)
...|+.-|=+++.
T Consensus 548 ls~L~~~Vf~~lr 560 (604)
T KOG3863|consen 548 LSELYQEVFQQLR 560 (604)
T ss_pred HHHHHHHHHHHHh
Confidence 7777766665555
No 66
>PRK10963 hypothetical protein; Provisional
Probab=39.16 E-value=1.1e+02 Score=27.05 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.3
Q ss_pred ecCCccCCchhhhhcccc
Q 025781 102 CNQMFRKGEKDLLCKIRR 119 (248)
Q Consensus 102 ~h~~F~rg~~~lL~~IkR 119 (248)
.||.|--.+|+||..|+=
T Consensus 14 ~~PdFf~~h~~Ll~~L~l 31 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRV 31 (223)
T ss_pred HCchHHhhCHHHHHhccC
Confidence 599999999999997754
No 67
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.75 E-value=91 Score=24.71 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSM 180 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~l 180 (248)
..|..||.+|+.||..|...|..+
T Consensus 32 ~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 32 QELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 68
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=37.73 E-value=59 Score=31.11 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=28.9
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHh
Q 025781 150 TSSLSEYNTLRDENKRLKKENGNLSSELVS---------MKRKCKELLDLVTKY 194 (248)
Q Consensus 150 ~~~~~~~~~L~~e~~~LkkEn~~L~~El~~---------lr~k~~~l~~~vs~~ 194 (248)
.........|..||+.|+.|.+.|..|+.+ ++.+++.+...|.+.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345556677888888888877777666654 333455555555554
No 69
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.40 E-value=1.1e+02 Score=25.47 Aligned_cols=43 Identities=37% Similarity=0.406 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..+..|..++..|+.|+..|.+++..++.+...|-...+.+.+
T Consensus 66 ~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 66 SELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3456677888888888888888888888887777666655444
No 70
>PRK10722 hypothetical protein; Provisional
Probab=36.70 E-value=81 Score=28.78 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=30.1
Q ss_pred hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTL----RDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 156 ~~~L----~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
|+.| ..++++|++++..|..+|....+|.+.|.+
T Consensus 167 y~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd 204 (247)
T PRK10722 167 YQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTD 204 (247)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 789999999999999999999999888775
No 71
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=36.68 E-value=59 Score=23.06 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025781 159 LRDENKRLKKENGNLSSEL 177 (248)
Q Consensus 159 L~~e~~~LkkEn~~L~~El 177 (248)
|..++.+|..|...|..++
T Consensus 15 L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 72
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=36.40 E-value=1.3e+02 Score=25.01 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
..|+.+...|+++...|..|+.+|+..-+.+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655444433
No 73
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.31 E-value=1.5e+02 Score=20.87 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
....+..+++.|+.+.+.|.+-+ +..-.|++.|++
T Consensus 15 ~i~tvk~en~~i~~~ve~i~env----k~ll~lYE~Vs~ 49 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENV----KDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHc
Confidence 35566666666666666666555 333444444443
No 74
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=36.28 E-value=1e+02 Score=28.66 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
....|.++...|++||..|..|+..++.+.+..-+|+..+.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~ 73 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVA 73 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999999999988766666665443
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.73 E-value=1.7e+02 Score=23.69 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
..+..++.+|..+...+..||.++-..+
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 76
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.64 E-value=1.8e+02 Score=23.28 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
....|..++..||.+...|..|-+.|+-.++.|...|...
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666666666666666666666654
No 77
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=34.53 E-value=1.8e+02 Score=23.76 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~v 191 (248)
..+..+.+++..|.+........+..++++|.+|.+-+
T Consensus 51 ~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 51 ERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788889998888889999999999988776544
No 78
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=33.44 E-value=84 Score=21.93 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
.....++..|..||..|..+|..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888888888888887763
No 79
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=33.20 E-value=68 Score=26.09 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMK 181 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr 181 (248)
...|..++.+|+-||..|.+.|.+--
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 46788899999999999988876544
No 80
>smart00340 HALZ homeobox associated leucin zipper.
Probab=32.93 E-value=1.3e+02 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
..|..=-+.|..||..|..||..+|.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566666666666666653
No 81
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.91 E-value=1.3e+02 Score=28.18 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELL 188 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~ 188 (248)
..+..|+.+|++||.....|.+||..||+.+-..+
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888889999888888899988888765544
No 82
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.59 E-value=1.2e+02 Score=24.19 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSM 180 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~l 180 (248)
..|..||..|+-||..|...|..+
T Consensus 32 ~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 32 AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444433
No 83
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=32.56 E-value=99 Score=28.61 Aligned_cols=41 Identities=34% Similarity=0.379 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
+..|++.++.|+.+|..|-.++.++++.-.++.+.|..+.+
T Consensus 229 isrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 229 ISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIH 269 (279)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677888888999999999999999998888888877666
No 84
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.47 E-value=2.3e+02 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
..|..++.++..|...|..|+.++...-
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 85
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=32.33 E-value=1.7e+02 Score=25.34 Aligned_cols=44 Identities=23% Similarity=0.399 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMD 198 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~ 198 (248)
....|..+++.|..++..|..+...++..|..|+.-+.+-....
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~~ 155 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRMA 155 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44567778888888888888888888888888888887555443
No 86
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=31.55 E-value=35 Score=25.48 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=42.1
Q ss_pred hhHHhhhccccceeecCCcceeecCCccCCchhhhhcccccCCcccchhhhhhhcccCCCccccccccCCcCchhhhhhH
Q 025781 80 SSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRQQAATAAATQQESHDEDQRSSSSTSSLSEYNTL 159 (248)
Q Consensus 80 sSFvRQLN~YGF~Kv~~~~~eF~h~~F~rg~~~lL~~IkRk~~~~~~~~~~~~~~~~~~s~~~~q~~s~~~~~~~~~~~L 159 (248)
.+|++.|.-||.-...... ...+|...+...+..|.|=..- .+ + +.......-.|
T Consensus 14 ~~~l~~lve~Gli~p~~~~---~~~~f~~~~l~rl~~~~rL~~D----------------l~----i--n~~gi~lil~L 68 (84)
T PF13591_consen 14 PEFLRELVEEGLIEPEGEE---EEWYFSEEDLARLRRIRRLHRD----------------LG----I--NLEGIALILDL 68 (84)
T ss_pred HHHHHHHHHCCCeeecCCC---CeeeECHHHHHHHHHHHHHHHH----------------cC----C--CHHHHHHHHHH
Confidence 5799999999998776543 2334555555556666552110 00 0 01112344678
Q ss_pred HHHHHHHHHHHHHHH
Q 025781 160 RDENKRLKKENGNLS 174 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~ 174 (248)
.++++.|++++..|.
T Consensus 69 Ld~i~~L~~el~~L~ 83 (84)
T PF13591_consen 69 LDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888998888888765
No 87
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.54 E-value=1.2e+02 Score=30.34 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
....+..+++.|.++|..|..|-.+||+
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777766
No 88
>KOG3805 consensus ERG and related ETS transcription factors [Transcription]
Probab=31.53 E-value=78 Score=30.05 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCC-CCCceEEcC-CCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhccccce
Q 025781 32 LLKTYMLIEDPA-TDNVISWNG-DGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYGFR 92 (248)
Q Consensus 32 l~KL~~ml~d~~-~~~iI~W~~-~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~ 92 (248)
-.-|.++|..|. +..+|+|-+ +-..|-|.+...+++-.=- +.=+.-||.-.-|-|..||=+
T Consensus 276 wQFLkELL~sP~~~~~~IrWVDkdKGiFkiess~~lArlWG~RKNR~~MnYdKlsRslRqYyKk 339 (361)
T KOG3805|consen 276 WQFLKELLYSPEQMGSCIRWVDKDKGIFKIESSEKLARLWGIRKNRKAMNYDKLSRSLRQYYKK 339 (361)
T ss_pred HHHHHHHHhChhhhchheEeeccCCceEEeecHHHHHHHhhhhcccccccHHHHHHHHHHHhhc
Confidence 344567788887 899999954 5566888888666652221 233456788888888887643
No 89
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.94 E-value=85 Score=22.91 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSSELVSM 180 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El~~l 180 (248)
....++..|+.|+..|..|+...
T Consensus 44 ~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 44 DAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666665555443
No 90
>PHA03162 hypothetical protein; Provisional
Probab=30.80 E-value=1.3e+02 Score=25.03 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVS 179 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~ 179 (248)
...|..|+.+|+-||..|.+.|.+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999998843
No 91
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=30.77 E-value=79 Score=31.86 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDNDD 201 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~~~~ 201 (248)
..+..+++.+......|..||...+.-|+.+++.|+-++.+++|.
T Consensus 458 ~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeq 502 (518)
T PF10212_consen 458 ESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQ 502 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456677888888888889999999999999999999888877764
No 92
>PRK04406 hypothetical protein; Provisional
Probab=30.44 E-value=2.3e+02 Score=20.99 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
..++...+-++.|-......+++|..|+.++..|.+-|..
T Consensus 18 ~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 18 CQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666677777777666666555543
No 93
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.34 E-value=2.2e+02 Score=21.51 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
.+..|.+.++..+.|+..|.+|=.-|++=+..|+.
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444444
No 94
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=30.25 E-value=95 Score=28.35 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|+.||+.|+.+++.|..|+..++..
T Consensus 225 ~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555544443
No 95
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.12 E-value=2e+02 Score=20.36 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKE 186 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~ 186 (248)
.....|..++..|+.+......|..+.-+.++.
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555544443
No 96
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=29.89 E-value=1e+02 Score=20.65 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025781 160 RDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
..++.+||++...|..||..+.+
T Consensus 26 d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 26 DEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 35778899999999988888764
No 97
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.86 E-value=2.3e+02 Score=21.53 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVS 179 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~ 179 (248)
.-|.-|++.||.+|..|.+|+..
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666665
No 98
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=29.47 E-value=1.4e+02 Score=28.54 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
...|..++..|.++|..|..|+.++..+
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~q 166 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQ 166 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666665554
No 99
>PHA03155 hypothetical protein; Provisional
Probab=29.32 E-value=80 Score=25.58 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVS 179 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~ 179 (248)
....|..++.+|+-||..|.+.|.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3568889999999999999998855
No 100
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=28.48 E-value=2.5e+02 Score=20.83 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..+.-|+-.|++....+.+||...=-+++.-+..+.++..
T Consensus 18 Da~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~k 57 (70)
T PF08606_consen 18 DALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLK 57 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344455555555555555555555567777778887776
No 101
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=28.15 E-value=52 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCceEEcCCCCeEEEeCchhhhhhhcc
Q 025781 45 DNVISWNGDGTGFVVWQPAEFARDLLP 71 (248)
Q Consensus 45 ~~iI~W~~~G~sFvI~d~~~F~~~vLp 71 (248)
.=.|+|.+|..+||......-++.|+-
T Consensus 34 ~I~VsWi~dTSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 34 QIYVSWINDTSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEEECTTEEEEEECCCHHHHHHHH
T ss_pred cEEEEEEcCCcEEEEeecHHHHHHHHH
Confidence 445999999999999988888776654
No 102
>PHA00728 hypothetical protein
Probab=28.15 E-value=84 Score=25.91 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025781 160 RDENKRLKKENGNLSSELVSMK 181 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~lr 181 (248)
..++++|++||..|..-|+.+.
T Consensus 4 ~teveql~keneelkkkla~le 25 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELE 25 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHH
Confidence 3578899999998776555543
No 103
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=28.13 E-value=1.3e+02 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
...+..++.+|++++..|..|+.-|++.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888877777766654
No 104
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=27.97 E-value=1.3e+02 Score=21.55 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENG----NLSSELVSMKRKCKELLD 189 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~----~L~~El~~lr~k~~~l~~ 189 (248)
...+..-+.-|+.|.. .|-.||.+|+++|.+|.-
T Consensus 5 v~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~ 42 (60)
T PF14916_consen 5 VQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTF 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccce
Confidence 3455666667766654 366788888888887653
No 105
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.92 E-value=1.8e+02 Score=26.11 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
........|++||..|.+|+..++.+..++
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788999999999999998876644
No 106
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.27 E-value=1.7e+02 Score=30.15 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
...+...+++|+.||..|..++..|+..+..|-.-+..+..
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666655555555554444433
No 107
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=27.18 E-value=2.1e+02 Score=21.97 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=35.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
..+...+...++.|+.....+..++..++..+..+...++...
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777888888898899999999999999888888887554
No 108
>PHA02109 hypothetical protein
Probab=27.14 E-value=2e+02 Score=25.24 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 160 RDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..++..|.....+|..|+.+++.++..+...|.+|+-
T Consensus 192 L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LS 228 (233)
T PHA02109 192 LKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLS 228 (233)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667888999999999999999999999988874
No 109
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.10 E-value=1.8e+02 Score=22.41 Aligned_cols=41 Identities=22% Similarity=0.077 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANM 197 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~ 197 (248)
..+.-++.+++++|..|..|...++......-..|.+|.-.
T Consensus 19 ~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vr 59 (87)
T PF10883_consen 19 AYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVR 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666665555555555555443
No 110
>PF15456 Uds1: Up-regulated During Septation
Probab=27.02 E-value=1.1e+02 Score=24.90 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 160 RDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
.+|++.||+|...|...+..++.++.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999998865
No 111
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.02 E-value=2.9e+02 Score=21.24 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSM 180 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~l 180 (248)
..+..++..|..||+.|..|.+..
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~~ 49 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAVA 49 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554433
No 112
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.98 E-value=2.5e+02 Score=20.41 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKE 186 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~ 186 (248)
.+..|..+|..|+.+...+..|=..+.+++..
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888887653
No 113
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.93 E-value=1.1e+02 Score=23.63 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
....|...++.|..+|..|..+|...++
T Consensus 81 ~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 81 EREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777778888888887777654
No 114
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.41 E-value=2.7e+02 Score=21.88 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=34.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
..+...+...++.|++....|..++..++..++.+...++..
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 86 EEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888999999999999999999998888877654
No 115
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=26.38 E-value=2e+02 Score=27.40 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccCC
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRK---CKELLDLVTKYANMDN 199 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k---~~~l~~~vs~~~~~~~ 199 (248)
....++..+..|..+|..|-.|-..++++ |++|+.+.++|+--++
T Consensus 34 ~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq 81 (328)
T PF15369_consen 34 EQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQ 81 (328)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788889999999999988888876 5666666667765433
No 116
>PRK00295 hypothetical protein; Provisional
Probab=26.24 E-value=2.5e+02 Score=20.22 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
..++..++-++.|-......+++|..|++++..|...|...
T Consensus 12 ~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 12 SRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666677777777777777777777766666655543
No 117
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=26.11 E-value=1.1e+02 Score=17.87 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025781 162 ENKRLKKENGNLSSELVSMK 181 (248)
Q Consensus 162 e~~~LkkEn~~L~~El~~lr 181 (248)
|+.+|+.....|.++|...+
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777776554
No 118
>PRK01203 prefoldin subunit alpha; Provisional
Probab=25.76 E-value=3.3e+02 Score=22.47 Aligned_cols=40 Identities=8% Similarity=0.177 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..++.++.-|+.+.+.|.+++..++....++...+..+-.
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567788888888888888888888888888777776655
No 119
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.71 E-value=1.2e+02 Score=22.78 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMK 181 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr 181 (248)
...+..+..+|+.||..|.-|+..+.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555544
No 120
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=25.55 E-value=2.2e+02 Score=26.03 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=39.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDND 200 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~~~ 200 (248)
.....|..|+..++.....|-+||..+-.++++|-.+|..|-..-..
T Consensus 113 ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 113 EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34578899999999999999999999999999999988877654443
No 121
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=25.54 E-value=1.2e+02 Score=28.23 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
....|.+++..|++.+..+.++++.|+.+.+-|.+-|.
T Consensus 79 e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~k 116 (389)
T PF06216_consen 79 EWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVK 116 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 34567888999999999999999999988665544443
No 122
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.32 E-value=2.9e+02 Score=21.29 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=32.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
..+...+...++.|......|..++..++.+++++...|+..
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577778888888888888888888888888888777653
No 123
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.27 E-value=1.6e+02 Score=24.94 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELL 188 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~ 188 (248)
...+..|++.|++|......|+..|+++.+.+.
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777776654
No 124
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=25.25 E-value=1.6e+02 Score=25.63 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 159 LRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 159 L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
-..+++.|+.++..|..||..-++|.+.|.+
T Consensus 128 sD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD 158 (179)
T PF13942_consen 128 SDSELDALRQQQQRLQYQLDTTTRKLENLTD 158 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3568899999999999999999999887765
No 125
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.18 E-value=2.3e+02 Score=26.47 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..+.++++.|.+|...|.+|+..++..
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444
No 126
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=25.02 E-value=2.7e+02 Score=25.09 Aligned_cols=30 Identities=43% Similarity=0.516 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
...+..+++.|+.....|..++.++++++.
T Consensus 13 n~~~~~e~~~Lk~kir~le~~l~~Lk~~l~ 42 (236)
T PF12017_consen 13 NRTLKIENKKLKKKIRRLEKELKKLKQKLE 42 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888888887653
No 127
>PRK02119 hypothetical protein; Provisional
Probab=24.87 E-value=2.8e+02 Score=20.29 Aligned_cols=39 Identities=5% Similarity=-0.029 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
.++..++-++.|-.-....++++..|++++..|.+.|..
T Consensus 17 rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 17 KIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666666666555544
No 128
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.71 E-value=1.9e+02 Score=28.92 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
....|+.+++.|++|.+.+..+...++++++.+-..+..+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4466777788887777655555555555554444444433
No 129
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.70 E-value=1.1e+02 Score=31.00 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
.....|++++..|++||..|+.+|..++..
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345788999999999999999999999964
No 130
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=24.51 E-value=2.7e+02 Score=22.92 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
....+.+..|+.||..|..-|..|++.|++=..
T Consensus 81 ~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~k 113 (126)
T PF13118_consen 81 DAKDETIEALKNENRFLKEALYSMQELYEEDRK 113 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445567888999999999999999999854333
No 131
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.44 E-value=2.5e+02 Score=25.63 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025781 165 RLKKENGNLSSELVSMK 181 (248)
Q Consensus 165 ~LkkEn~~L~~El~~lr 181 (248)
.+.+|+..|..|+..++
T Consensus 146 E~~~EkeeL~~eleele 162 (290)
T COG4026 146 ELQKEKEELLKELEELE 162 (290)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 132
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=24.39 E-value=81 Score=30.46 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=24.6
Q ss_pred chHHHHHHhhcCCCC----CCceEEcCCCCeEEEeCch
Q 025781 30 PFLLKTYMLIEDPAT----DNVISWNGDGTGFVVWQPA 63 (248)
Q Consensus 30 ~Fl~KL~~ml~d~~~----~~iI~W~~~G~sFvI~d~~ 63 (248)
-|..+-|.+|..-.. -.-|.|+|||+...|||.-
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~ 199 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV 199 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch
Confidence 455677888764332 2348999999999999874
No 133
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.34 E-value=32 Score=29.52 Aligned_cols=20 Identities=50% Similarity=0.682 Sum_probs=2.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSSEL 177 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El 177 (248)
.|..++++||.|.-.|++|+
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555
No 134
>PF14645 Chibby: Chibby family
Probab=24.12 E-value=1.5e+02 Score=23.71 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELV 178 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~ 178 (248)
....+..++++|+.||..|.-++.
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666665555443
No 135
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=3e+02 Score=23.01 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=36.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
......|..+++.|.+-...|..+|..+-+.+.++...++.+.+
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888999998888888888887766
No 136
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=23.33 E-value=2.4e+02 Score=19.01 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
.++.|..+++.|..-...+...|..|-.+| ..+..|.++.
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~-~~i~~LG~~~ 42 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMTSIQA-NSIRKLGKIH 42 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 467888999999988888888888888888 5556665554
No 137
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=23.16 E-value=2.3e+02 Score=28.47 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDN 199 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~~ 199 (248)
..|..++.+|...|..|..-|...++++..|...|.++.+++-
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~ 46 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPS 46 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4567788888888888888899999988888888888877643
No 138
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.73 E-value=1.9e+02 Score=25.44 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKE 186 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~ 186 (248)
...|..+...|.+|++.|-.++..++....+
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444555555555555555555544333
No 139
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=22.33 E-value=1.4e+02 Score=20.76 Aligned_cols=33 Identities=36% Similarity=0.417 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhc
Q 025781 164 KRLKKENGNLSSELVSMKRK----CKELLDLVTKYAN 196 (248)
Q Consensus 164 ~~LkkEn~~L~~El~~lr~k----~~~l~~~vs~~~~ 196 (248)
+.++++++.|+.|+.+-|-+ +..|+.+...+..
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~ 38 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAE 38 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCC
Confidence 46778888888888777766 5556665555543
No 140
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.95 E-value=3.2e+02 Score=19.90 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
.++...+-++.|-.-....++++..|++++..|.+-+..
T Consensus 16 ~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 16 RLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666666666666666665555555544
No 141
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.82 E-value=1.6e+02 Score=24.54 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
...|..++..|+.+...|..||..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555566666666555555555443
No 142
>PRK00736 hypothetical protein; Provisional
Probab=21.74 E-value=3.2e+02 Score=19.72 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=25.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
..++..++-++.|-.....-+++|..|++++..|.+-+..
T Consensus 12 ~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 12 IRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667666666777777777666666665544
No 143
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=21.70 E-value=3.3e+02 Score=19.89 Aligned_cols=36 Identities=36% Similarity=0.390 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 159 LRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 159 L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
|...++.|+-.|..|..-+...++.+..+.-.+.+|
T Consensus 3 L~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~ 38 (67)
T PF10506_consen 3 LKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKY 38 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888877777777777777666655
No 144
>PF14420 Clr5: Clr5 domain
Probab=21.67 E-value=40 Score=23.16 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=13.5
Q ss_pred ChhhHHhhhcccccee
Q 025781 78 NFSSFVRQLNTYGFRK 93 (248)
Q Consensus 78 nfsSFvRQLN~YGF~K 93 (248)
+-..+.++|..|||+|
T Consensus 39 t~rqy~~r~~~Wg~~K 54 (54)
T PF14420_consen 39 TKRQYKRRFKKWGFRK 54 (54)
T ss_pred CHHHHHHHHHHcCCCC
Confidence 4667889999999986
No 145
>PF13974 YebO: YebO-like protein
Probab=21.60 E-value=2.4e+02 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 168 KENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 168 kEn~~L~~El~~lr~k~~~l~~~v 191 (248)
.|+..|.+++...++++++|+.-|
T Consensus 26 NEQI~LL~~ileqQKrQn~LL~rL 49 (80)
T PF13974_consen 26 NEQIELLEEILEQQKRQNALLRRL 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366678888888888888766433
No 146
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=21.50 E-value=3.3e+02 Score=19.90 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHH
Q 025781 155 EYNTLRDENKRLK 167 (248)
Q Consensus 155 ~~~~L~~e~~~Lk 167 (248)
.+..|..+|..||
T Consensus 7 ~l~~LL~EN~~LK 19 (68)
T PF11577_consen 7 QLQELLQENQDLK 19 (68)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4556677776654
No 147
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.48 E-value=3.2e+02 Score=24.74 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
..+..+..+=++.|..|..|..|+.++++++..|..-|.+
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~ 118 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVES 118 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777776666555543
No 148
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.45 E-value=2.2e+02 Score=24.59 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
...+..++..|+.++..|..++..++.++..+..-
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888777665543
No 149
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.24 E-value=3.9e+02 Score=21.33 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=35.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..+...|...++.|.+....|..++..++++++++...+.....
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888889999999999988888888876554
No 150
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=21.22 E-value=1.9e+02 Score=26.50 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
..|++++..|-.||+.|..|-..||.+.+.|
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666554433
No 151
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=21.03 E-value=3.5e+02 Score=21.42 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
.+.+..+++.|+.++..|..|+..|+.-
T Consensus 59 i~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 59 IAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3466777888888888888888887766
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.97 E-value=3.3e+02 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
..|..+++.|+..|..|...+..+++
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQ 84 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333
No 153
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.92 E-value=85 Score=31.43 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025781 162 ENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 162 e~~~LkkEn~~L~~El~~lr~k 183 (248)
+++.|++|.+.|++++..|..+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 5666666666655555544443
No 154
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.70 E-value=88 Score=31.33 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
.+.++++.|+ +.+.|.+||..|+++...+.+.|.+
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 4456666666 8888888888888887755555544
No 155
>PF15294 Leu_zip: Leucine zipper
Probab=20.50 E-value=2e+02 Score=26.69 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
.-|..++.+|+.||..|...+..+...+...
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~ 158 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSA 158 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577889999999999999888888876433
No 156
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=20.24 E-value=1.2e+02 Score=25.53 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 162 ENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 162 e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
.|+.+..-.+.+..|+..|.+.++.+.-+|+-..-
T Consensus 7 ~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IP 41 (150)
T PF02252_consen 7 SNEKIVELLQKVKPEIRELIEKCNTVKMWIQLLIP 41 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34556666667777778888888888777775544
No 157
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.21 E-value=3.4e+02 Score=19.44 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
.+.+..++...+..|..+.+.|.....++..|..-|.++
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777776666666544
No 158
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=20.17 E-value=3.2e+02 Score=22.84 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 161 DENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 161 ~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
.++..|..+|..-..|+..+-.+-+.|+..|+..+
T Consensus 91 ~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~l 125 (139)
T KOG1510|consen 91 EKIKKLQEENEEVALELEELVSKGEKLLEQVQSLL 125 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888888888888888777776543
No 159
>PRK14011 prefoldin subunit alpha; Provisional
Probab=20.09 E-value=2.3e+02 Score=23.55 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
.+..+..+++.|..+.+.|..++..++.-..++...+..+-
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777788888887777777666666666554
No 160
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=20.09 E-value=63 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=33.1
Q ss_pred hHHHHHH--hhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCCh
Q 025781 31 FLLKTYM--LIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNF 79 (248)
Q Consensus 31 Fl~KL~~--ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nf 79 (248)
...|-++ +|.+.. -.+|-|+++|..+.+|.+.. ...+|-+|+....+
T Consensus 27 l~kKa~ELs~Lc~~~-v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~ 75 (83)
T cd00266 27 LFKKASELSTLCGAE-VAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSAL 75 (83)
T ss_pred HHHHHHHHHHhhCCc-EEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHh
Confidence 4445544 356644 35788999999999998887 77788877665443
No 161
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.05 E-value=1.2e+02 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025781 165 RLKKENGNLSSELVSMKRKCKE 186 (248)
Q Consensus 165 ~LkkEn~~L~~El~~lr~k~~~ 186 (248)
+++++...+.+|+.+++++.++
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555554443
No 162
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=20.02 E-value=1.4e+02 Score=20.04 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSEL 177 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El 177 (248)
.....|+.++..|..||..|..++
T Consensus 21 ~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 21 IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 345677788888888888777664
Done!