Query 025781
Match_columns 248
No_of_seqs 200 out of 1023
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:27:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 5.9E-42 2E-46 269.8 6.8 95 26-120 2-106 (106)
2 2ldu_A Heat shock factor prote 100.0 2.6E-41 9E-46 273.4 8.1 101 24-124 13-124 (125)
3 3hts_B Heat shock transcriptio 100.0 8E-35 2.7E-39 227.7 4.3 83 23-105 7-100 (102)
4 1gvj_A C-ETS-1 protein, P54; t 94.5 0.039 1.3E-06 45.1 4.5 84 20-103 31-119 (146)
5 1awc_A Protein (GA binding pro 93.9 0.032 1.1E-06 43.6 2.8 70 34-103 6-80 (110)
6 1bc8_C SAP-1, protein (SAP-1 E 93.6 0.027 9.1E-07 42.8 1.8 75 29-103 5-84 (93)
7 2nny_A C-ETS-1 protein, P54; p 93.5 0.068 2.3E-06 44.7 4.3 80 24-103 60-144 (171)
8 1fli_A FLI-1; transcription/DN 93.4 0.052 1.8E-06 41.6 3.1 61 30-90 7-68 (98)
9 4avp_A ETS translocation varia 93.0 0.073 2.5E-06 41.3 3.5 75 29-103 12-91 (106)
10 2ypr_A Protein FEV; transcript 92.9 0.07 2.4E-06 41.1 3.2 75 29-103 8-87 (102)
11 2wt7_A Proto-oncogene protein 91.1 0.61 2.1E-05 32.4 6.2 38 156-193 25-62 (63)
12 2dao_A Transcription factor ET 90.5 0.18 6.3E-06 39.7 3.3 76 28-103 8-89 (118)
13 1wwx_A E74-like factor 5 ESE-2 90.4 0.2 7E-06 38.8 3.4 66 25-90 5-73 (107)
14 3jtg_A ETS-related transcripti 89.3 0.21 7.1E-06 38.5 2.6 73 30-102 6-85 (103)
15 1t2k_D Cyclic-AMP-dependent tr 88.1 1.3 4.6E-05 30.3 6.0 36 156-191 24-59 (61)
16 2yy0_A C-MYC-binding protein; 88.1 0.8 2.7E-05 31.0 4.7 31 161-191 19-49 (53)
17 1yo5_C SAM pointed domain cont 88.0 0.27 9.2E-06 37.5 2.5 66 27-92 9-77 (97)
18 1hbx_G ETS-domain protein ELK- 87.8 0.22 7.6E-06 41.0 2.0 74 30-103 7-85 (157)
19 1deb_A APC protein, adenomatou 87.2 1.4 4.8E-05 29.6 5.3 33 155-187 4-36 (54)
20 1ci6_A Transcription factor AT 87.2 1.6 5.6E-05 30.3 6.0 37 156-192 25-61 (63)
21 1pue_E Protein (transcription 86.9 0.35 1.2E-05 36.3 2.5 58 33-90 6-68 (89)
22 3m48_A General control protein 86.3 1.2 4.1E-05 27.3 4.2 27 157-183 3-29 (33)
23 2lf8_A Transcription factor ET 85.8 0.16 5.4E-06 40.6 0.0 57 34-90 10-68 (128)
24 1kd8_B GABH BLL, GCN4 acid bas 84.9 2.3 7.7E-05 26.5 5.0 29 157-185 4-32 (36)
25 1hjb_A Ccaat/enhancer binding 83.8 2.1 7.1E-05 31.9 5.5 38 157-194 39-76 (87)
26 3c3g_A Alpha/beta peptide with 83.1 2.2 7.6E-05 26.1 4.3 27 157-183 3-29 (33)
27 1jnm_A Proto-oncogene C-JUN; B 82.6 1.3 4.3E-05 30.6 3.7 37 156-192 24-60 (62)
28 1uo4_A General control protein 82.4 2.4 8.2E-05 26.1 4.3 27 157-183 4-30 (34)
29 4dzn_A Coiled-coil peptide CC- 81.9 3.7 0.00013 24.5 4.9 28 156-183 4-31 (33)
30 3c3f_A Alpha/beta peptide with 81.9 2.6 8.8E-05 25.9 4.3 27 157-183 4-30 (34)
31 1t6f_A Geminin; coiled-coil, c 81.7 2.9 9.9E-05 26.1 4.6 33 158-190 4-36 (37)
32 2oxj_A Hybrid alpha/beta pepti 80.8 3 0.0001 25.7 4.3 27 157-183 4-30 (34)
33 2wt7_B Transcription factor MA 80.5 2.2 7.7E-05 31.9 4.6 34 154-187 55-88 (90)
34 2bni_A General control protein 80.0 3.3 0.00011 25.5 4.3 27 157-183 4-30 (34)
35 1kd8_A GABH AIV, GCN4 acid bas 79.5 3.4 0.00011 25.8 4.3 28 157-184 4-31 (36)
36 2hy6_A General control protein 79.1 3.6 0.00012 25.3 4.3 27 157-183 4-30 (34)
37 1dh3_A Transcription factor CR 78.4 1.2 4.2E-05 30.1 2.4 29 156-184 24-52 (55)
38 2wq1_A General control protein 78.3 4 0.00014 24.9 4.3 27 157-183 3-29 (33)
39 2dgc_A Protein (GCN4); basic d 78.1 2.7 9.4E-05 29.2 4.2 31 155-185 31-61 (63)
40 1gu4_A CAAT/enhancer binding p 77.6 2.3 7.8E-05 31.0 3.7 36 157-192 39-74 (78)
41 2w6b_A RHO guanine nucleotide 77.3 6.4 0.00022 26.8 5.6 42 156-197 12-53 (56)
42 2w6a_A ARF GTPase-activating p 75.8 8.4 0.00029 26.7 6.0 38 155-192 21-58 (63)
43 3m91_A Proteasome-associated A 74.7 16 0.00054 24.4 7.0 43 153-195 8-50 (51)
44 2yy0_A C-MYC-binding protein; 74.5 4.8 0.00016 27.1 4.5 33 153-185 18-50 (53)
45 2r2v_A GCN4 leucine zipper; co 73.1 6.5 0.00022 24.2 4.3 27 157-183 4-30 (34)
46 1uii_A Geminin; human, DNA rep 71.1 14 0.00047 27.2 6.5 40 156-195 41-80 (83)
47 3ra3_B P2F; coiled coil domain 70.5 5.5 0.00019 22.9 3.4 18 165-182 4-21 (28)
48 1hjb_A Ccaat/enhancer binding 70.4 6.3 0.00022 29.2 4.7 37 154-190 43-79 (87)
49 3he5_B Synzip2; heterodimeric 67.6 22 0.00077 23.0 6.3 40 156-195 5-44 (52)
50 4dzn_A Coiled-coil peptide CC- 64.5 18 0.0006 21.5 4.8 26 162-187 3-28 (33)
51 1gu4_A CAAT/enhancer binding p 63.9 8.8 0.0003 27.8 4.2 31 154-184 43-73 (78)
52 2jee_A YIIU; FTSZ, septum, coi 63.6 17 0.00059 26.6 5.8 37 159-195 25-75 (81)
53 3ra3_B P2F; coiled coil domain 63.4 8.7 0.0003 22.1 3.2 25 157-181 3-27 (28)
54 1t2k_D Cyclic-AMP-dependent tr 61.7 16 0.00055 24.7 5.1 30 154-183 29-58 (61)
55 1fmh_A General control protein 58.8 18 0.00062 21.5 4.2 28 157-184 4-31 (33)
56 1wlq_A Geminin; coiled-coil; 2 58.3 26 0.00091 25.7 6.0 37 156-192 33-69 (83)
57 3w03_C DNA repair protein XRCC 57.5 15 0.00052 30.8 5.2 37 155-191 146-182 (184)
58 1txp_A HnRNP C, heterogeneous 57.4 17 0.00059 21.3 3.8 25 171-195 2-26 (28)
59 3l4f_A RHO guanine nucleotide 55.8 23 0.00078 24.6 5.0 45 156-200 9-53 (61)
60 1gd2_E Transcription factor PA 54.9 24 0.00081 25.0 5.1 37 156-192 31-67 (70)
61 3w03_C DNA repair protein XRCC 54.3 14 0.00049 31.0 4.5 33 153-185 151-183 (184)
62 1a93_B MAX protein, coiled coi 51.9 17 0.00057 22.4 3.4 22 157-178 10-31 (34)
63 3t97_C Nuclear pore glycoprote 51.6 29 0.001 24.1 5.1 44 154-197 12-55 (64)
64 3cue_D Transport protein parti 51.3 10 0.00034 32.0 3.1 61 30-91 88-157 (193)
65 1a93_B MAX protein, coiled coi 51.1 34 0.0012 21.0 4.7 27 166-192 5-31 (34)
66 2wuj_A Septum site-determining 50.9 13 0.00045 25.0 3.1 28 156-183 29-56 (57)
67 2wt7_A Proto-oncogene protein 50.7 36 0.0012 23.1 5.4 31 154-184 30-60 (63)
68 1ci6_A Transcription factor AT 49.9 29 0.00099 23.7 4.8 32 154-185 30-61 (63)
69 2wvr_A Geminin; DNA replicatio 49.5 44 0.0015 28.5 6.8 29 157-185 111-139 (209)
70 3ra3_A P1C; coiled coil domain 49.0 12 0.0004 21.5 2.2 20 166-185 5-24 (28)
71 2xdj_A Uncharacterized protein 48.7 46 0.0016 24.2 6.0 38 155-192 28-65 (83)
72 1nkp_B MAX protein, MYC proto- 47.5 52 0.0018 23.3 6.1 37 158-194 44-80 (83)
73 1g6u_A Domain swapped dimer; d 46.9 54 0.0018 20.9 6.4 33 158-190 4-42 (48)
74 1go4_E MAD1 (mitotic arrest de 46.5 36 0.0012 25.8 5.3 30 154-183 12-41 (100)
75 2zxx_A Geminin; coiled-coil, c 46.2 44 0.0015 24.3 5.4 37 156-192 29-65 (79)
76 1fmh_B General control protein 46.1 45 0.0015 19.7 4.7 28 157-184 4-31 (33)
77 1wt6_A Myotonin-protein kinase 45.6 74 0.0025 23.2 6.6 42 155-196 25-66 (81)
78 2wvr_A Geminin; DNA replicatio 43.7 62 0.0021 27.5 6.8 48 155-202 116-166 (209)
79 1jnm_A Proto-oncogene C-JUN; B 43.3 17 0.00058 24.7 2.8 30 154-183 29-58 (62)
80 2oqq_A Transcription factor HY 43.2 63 0.0022 20.7 5.6 32 158-189 7-38 (42)
81 3hnw_A Uncharacterized protein 42.2 73 0.0025 25.1 6.8 36 157-192 78-113 (138)
82 1nlw_A MAD protein, MAX dimeri 41.5 35 0.0012 24.4 4.4 26 163-188 49-74 (80)
83 2j5u_A MREC protein; bacterial 41.4 13 0.00044 32.3 2.3 29 155-183 20-48 (255)
84 1nkp_A C-MYC, MYC proto-oncoge 41.4 95 0.0032 22.4 6.8 39 157-195 48-86 (88)
85 1uii_A Geminin; human, DNA rep 41.3 74 0.0025 23.3 6.1 35 155-189 47-81 (83)
86 3a5t_A Transcription factor MA 41.1 0.18 6.3E-06 39.1 -8.5 38 156-193 67-104 (107)
87 1nkp_B MAX protein, MYC proto- 41.1 31 0.001 24.5 4.0 31 156-186 49-79 (83)
88 3s9g_A Protein hexim1; cyclin 40.4 42 0.0014 25.5 4.7 22 156-177 67-88 (104)
89 3m9b_A Proteasome-associated A 40.4 39 0.0013 29.7 5.2 45 154-198 54-98 (251)
90 1gd2_E Transcription factor PA 39.5 32 0.0011 24.3 3.8 31 155-185 37-67 (70)
91 2wt7_B Transcription factor MA 39.4 80 0.0027 23.4 6.1 33 157-189 51-83 (90)
92 1sz7_A BET3 homolog, trafficki 37.9 20 0.00069 30.3 3.0 62 30-92 85-154 (200)
93 3v86_A De novo design helix; c 36.8 45 0.0016 18.9 3.3 23 158-180 4-26 (27)
94 3he5_A Synzip1; heterodimeric 36.3 84 0.0029 20.1 6.3 18 155-172 11-28 (49)
95 1whv_A Poly(A)-specific ribonu 33.1 11 0.00037 28.7 0.4 52 35-87 32-88 (100)
96 3r4h_A Coiled coil helix CC-TE 32.7 68 0.0023 19.1 3.8 26 156-181 4-29 (34)
97 2oa5_A Hypothetical protein BQ 32.7 67 0.0023 24.7 4.8 24 156-179 10-33 (110)
98 2jee_A YIIU; FTSZ, septum, coi 31.9 1.5E+02 0.005 21.5 6.7 23 166-188 53-75 (81)
99 1gk6_A Vimentin; intermediate 31.6 1.1E+02 0.0037 20.5 5.4 31 160-190 6-36 (59)
100 2w83_C C-JUN-amino-terminal ki 31.6 1.1E+02 0.0038 22.0 5.5 36 155-190 31-66 (77)
101 3vem_A Helicase protein MOM1; 30.8 1.1E+02 0.0036 23.8 5.7 20 173-192 66-85 (115)
102 3i00_A HIP-I, huntingtin-inter 30.5 1.1E+02 0.0037 23.7 5.9 18 158-175 19-36 (120)
103 3mq7_A Bone marrow stromal ant 29.8 1.3E+02 0.0043 23.5 6.0 36 156-191 73-108 (121)
104 3m9b_A Proteasome-associated A 29.8 51 0.0017 28.9 4.2 37 153-189 60-96 (251)
105 2w6b_A RHO guanine nucleotide 28.7 1.2E+02 0.0042 20.4 5.0 29 157-185 6-34 (56)
106 2v66_B Nuclear distribution pr 28.6 1.2E+02 0.0039 23.3 5.6 33 155-187 36-68 (111)
107 1nlw_A MAD protein, MAX dimeri 28.0 1.1E+02 0.0038 21.7 5.2 31 156-186 49-79 (80)
108 3iv1_A Tumor susceptibility ge 27.9 1.4E+02 0.0048 21.5 5.6 35 155-189 40-74 (78)
109 3t97_B Nuclear pore complex pr 27.6 1.6E+02 0.0053 20.5 6.5 41 156-196 12-52 (65)
110 1ik9_A DNA repair protein XRCC 27.3 1E+02 0.0035 26.1 5.6 30 157-186 135-164 (213)
111 2ke4_A CDC42-interacting prote 27.0 1.1E+02 0.0037 22.8 5.1 43 160-202 14-56 (98)
112 3m91_A Proteasome-associated A 26.8 1.4E+02 0.0048 19.7 5.6 34 154-187 16-49 (51)
113 1a93_A Coiled coil, LZ, MYC pr 26.4 81 0.0028 19.3 3.5 26 154-179 7-32 (34)
114 3e98_A GAF domain of unknown f 25.8 1.1E+02 0.0039 26.1 5.8 21 99-119 37-59 (252)
115 2w6a_A ARF GTPase-activating p 25.3 1.3E+02 0.0044 20.7 4.7 32 154-185 27-58 (63)
116 1nkp_A C-MYC, MYC proto-oncoge 25.0 1.4E+02 0.0047 21.5 5.3 22 159-180 64-85 (88)
117 1bb1_A Designed, thermostable 25.0 1.2E+02 0.004 18.2 5.4 32 162-193 3-34 (36)
118 2l5g_B Putative uncharacterize 24.7 1.4E+02 0.0048 19.0 5.5 34 157-190 5-38 (42)
119 3cve_A Homer protein homolog 1 24.5 1.9E+02 0.0065 20.4 6.8 30 156-185 9-38 (72)
120 3ctr_A Poly(A)-specific ribonu 24.5 22 0.00074 27.1 0.8 41 46-86 32-77 (101)
121 1bb1_B Designed, thermostable 24.4 1.2E+02 0.0041 18.2 5.4 31 163-193 4-34 (36)
122 3a7p_A Autophagy protein 16; c 23.9 2.2E+02 0.0076 23.0 6.8 33 157-189 99-131 (152)
123 4g2k_A General control protein 23.8 2E+02 0.0068 22.5 6.2 35 158-192 18-52 (125)
124 1wlq_A Geminin; coiled-coil; 2 23.7 2.2E+02 0.0074 20.8 6.2 36 155-190 39-74 (83)
125 4etp_A Kinesin-like protein KA 23.6 1.3E+02 0.0044 27.6 6.1 26 157-182 13-38 (403)
126 3q4f_C DNA repair protein XRCC 23.3 69 0.0023 26.8 3.7 13 48-60 51-64 (186)
127 3s9g_A Protein hexim1; cyclin 23.2 2.1E+02 0.0071 21.6 6.0 33 157-189 47-86 (104)
128 3mud_A DNA repair protein XRCC 22.1 1.7E+02 0.0057 24.2 5.8 34 160-193 134-167 (175)
129 3cvf_A Homer-3, homer protein 22.0 2.2E+02 0.0077 20.4 6.9 34 154-187 13-46 (79)
130 4emc_A Monopolin complex subun 22.0 2.1E+02 0.0073 23.9 6.4 7 186-192 76-82 (190)
131 1g6u_A Domain swapped dimer; d 21.9 1.6E+02 0.0055 18.7 4.7 24 155-178 21-44 (48)
132 1use_A VAsp, vasodilator-stimu 21.9 1.7E+02 0.0058 18.9 5.7 33 161-193 7-41 (45)
133 3hnw_A Uncharacterized protein 21.7 2.6E+02 0.009 21.8 6.8 25 169-193 104-128 (138)
134 2wg5_A General control protein 21.5 84 0.0029 23.6 3.6 25 164-188 10-34 (109)
135 3kqg_A Langerin, C-type lectin 21.4 84 0.0029 24.5 3.8 19 164-182 19-37 (182)
136 2xv5_A Lamin-A/C; structural p 21.2 2.2E+02 0.0076 20.0 6.1 45 157-201 8-59 (74)
137 3swf_A CGMP-gated cation chann 20.7 90 0.0031 22.3 3.4 44 154-197 7-50 (74)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=5.9e-42 Score=269.78 Aligned_cols=95 Identities=42% Similarity=0.812 Sum_probs=91.2
Q ss_pred CCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeec----------
Q 025781 26 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA---------- 95 (248)
Q Consensus 26 ~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~---------- 95 (248)
+.+|+||.|||+||+||++++||+|+++|++|||+|+.+|+++|||+||+|+||+|||||||+|||+|+.
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~ 81 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCcceeecCCccCCchhhhhccccc
Q 025781 96 TSRWEFCNQMFRKGEKDLLCKIRRR 120 (248)
Q Consensus 96 ~~~~eF~h~~F~rg~~~lL~~IkRk 120 (248)
++.|+|+||+|+||+|+||..|+||
T Consensus 82 ~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 82 RDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCceEEECcCccCcCHHHHhhCcCC
Confidence 3679999999999999999999996
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=273.40 Aligned_cols=101 Identities=44% Similarity=0.795 Sum_probs=95.3
Q ss_pred hcCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeec--------
Q 025781 24 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-------- 95 (248)
Q Consensus 24 ~~~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-------- 95 (248)
.....++||.|||+||+||++++||+|+++|++|+|+|+.+|+++|||+||+|+||+|||||||+|||+|+.
T Consensus 13 ~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~ 92 (125)
T 2ldu_A 13 GPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLV 92 (125)
T ss_dssp SSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSS
T ss_pred cCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccc
Confidence 456789999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ---CCcceeecCCccCCchhhhhcccccCCcc
Q 025781 96 ---TSRWEFCNQMFRKGEKDLLCKIRRRKAWA 124 (248)
Q Consensus 96 ---~~~~eF~h~~F~rg~~~lL~~IkRk~~~~ 124 (248)
++.|+|+||+|+||+|+||..|+||++..
T Consensus 93 ~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~~ 124 (125)
T 2ldu_A 93 KPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124 (125)
T ss_dssp SCSSCCEEEECTTCBTTBGGGTTTSCCCTTSC
T ss_pred cCCCCccEEECccccCCCHHHHhhCcCCCCCC
Confidence 36799999999999999999999998753
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=100.00 E-value=8e-35 Score=227.68 Aligned_cols=83 Identities=42% Similarity=0.803 Sum_probs=77.2
Q ss_pred hhcCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeec-------
Q 025781 23 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA------- 95 (248)
Q Consensus 23 ~~~~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~------- 95 (248)
.....+|+||.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||+|+||+||+||||+|||+|+.
T Consensus 7 ~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~ 86 (102)
T 3hts_B 7 VGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSM 86 (102)
T ss_dssp ---CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC-------
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcc
Confidence 3446789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCcceeecCC
Q 025781 96 ----TSRWEFCNQM 105 (248)
Q Consensus 96 ----~~~~eF~h~~ 105 (248)
++.|||.|++
T Consensus 87 ~~~~~~~wEF~n~~ 100 (102)
T 3hts_B 87 LSNNDSRWEFENER 100 (102)
T ss_dssp --CCSCCEEEEECC
T ss_pred cCCCcCCeEecCCC
Confidence 6789999986
No 4
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=94.45 E-value=0.039 Score=45.09 Aligned_cols=84 Identities=27% Similarity=0.326 Sum_probs=62.3
Q ss_pred hHhhhcCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccC-CCCCCChhhHHhhhccccce----ee
Q 025781 20 LEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPT-LFKHSNFSSFVRQLNTYGFR----KV 94 (248)
Q Consensus 20 ~~~~~~~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~YGF~----Kv 94 (248)
+.....+.+...-.=|.++|.|++..++|+|...+.-|.+.|+++.++-.=.+ -=..-||...-|-|..|-=+ ||
T Consensus 31 ~~~~~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv 110 (146)
T 1gvj_A 31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT 110 (146)
T ss_dssp HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred ccCCCCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEec
Confidence 33334566777778889999999999999999999999999999988843321 22356799999999887544 45
Q ss_pred cCCcceeec
Q 025781 95 ATSRWEFCN 103 (248)
Q Consensus 95 ~~~~~eF~h 103 (248)
...+..|..
T Consensus 111 ~GkrlvY~F 119 (146)
T 1gvj_A 111 AGKRYVYRF 119 (146)
T ss_dssp TTSSSEEEE
T ss_pred CCCeEEEEe
Confidence 545566654
No 5
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=93.87 E-value=0.032 Score=43.55 Aligned_cols=70 Identities=26% Similarity=0.292 Sum_probs=51.0
Q ss_pred HHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccC-CCCCCChhhHHhhhccccce----eecCCcceeec
Q 025781 34 KTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPT-LFKHSNFSSFVRQLNTYGFR----KVATSRWEFCN 103 (248)
Q Consensus 34 KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~eF~h 103 (248)
=|.++|.||++.++|+|...+.-|.+.||++.++-.=.+ -=..-||...-|-|..|.=+ ||...+..|..
T Consensus 6 FLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~F 80 (110)
T 1awc_A 6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF 80 (110)
T ss_dssp HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEEE
T ss_pred HHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEec
Confidence 467889999999999999999999999999888744332 22356789999999887533 33334455543
No 6
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=93.60 E-value=0.027 Score=42.80 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=55.1
Q ss_pred CchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhccccc----eeecCCcceeec
Q 025781 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYGF----RKVATSRWEFCN 103 (248)
Q Consensus 29 ~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~h 103 (248)
...-.=|.++|.||++.++|+|...+.-|.+.||++.++--=. +-=..-||...-|-|..|-= +||...+..|..
T Consensus 5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F 84 (93)
T 1bc8_C 5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 84 (93)
T ss_dssp CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 3445567899999999999999988889999999988874332 12246789999999988752 244445566654
No 7
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=93.50 E-value=0.068 Score=44.69 Aligned_cols=80 Identities=28% Similarity=0.360 Sum_probs=60.1
Q ss_pred hcCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccC-CCCCCChhhHHhhhccccce----eecCCc
Q 025781 24 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPT-LFKHSNFSSFVRQLNTYGFR----KVATSR 98 (248)
Q Consensus 24 ~~~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~YGF~----Kv~~~~ 98 (248)
..+.+.....=|.++|.|+...++|+|...+.-|.+.|+++.++-.=.+ -=..-||.-.-|-|..|-=+ ||...+
T Consensus 60 ~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkr 139 (171)
T 2nny_A 60 TGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKR 139 (171)
T ss_dssp HTCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTST
T ss_pred CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCe
Confidence 3556677777888999999999999999999999999999988844331 22356799999999887544 444455
Q ss_pred ceeec
Q 025781 99 WEFCN 103 (248)
Q Consensus 99 ~eF~h 103 (248)
..|..
T Consensus 140 lvY~F 144 (171)
T 2nny_A 140 YVYRF 144 (171)
T ss_dssp TEEEE
T ss_pred EEEEe
Confidence 55554
No 8
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=93.36 E-value=0.052 Score=41.57 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=46.9
Q ss_pred chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhcccc
Q 025781 30 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYG 90 (248)
Q Consensus 30 ~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 90 (248)
..-.=|.++|+|+++.++|+|...+.-|.+.||++.++-.=. +-=..-||.-.-|-|..|-
T Consensus 7 ~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred eHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 344556788999999999999999999999999988873332 1224667888888887774
No 9
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=93.00 E-value=0.073 Score=41.27 Aligned_cols=75 Identities=27% Similarity=0.398 Sum_probs=55.4
Q ss_pred CchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhccccc----eeecCCcceeec
Q 025781 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYGF----RKVATSRWEFCN 103 (248)
Q Consensus 29 ~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~h 103 (248)
-....=|.++|+|+++.++|+|...+.-|.+.||++.++--=. +-=..-+|..+-|-|..|-= +||...+..|..
T Consensus 12 i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYkF 91 (106)
T 4avp_A 12 LQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 91 (106)
T ss_dssp CCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEEE
T ss_pred EeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEEe
Confidence 3455567889999999999999999989999999988873332 12246789999999988742 355555666653
No 10
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=92.89 E-value=0.07 Score=41.13 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=54.1
Q ss_pred CchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhccccc----eeecCCcceeec
Q 025781 29 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYGF----RKVATSRWEFCN 103 (248)
Q Consensus 29 ~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~h 103 (248)
.....=|.++|+|+++.++|+|...+.-|.+.||++.++--=. +-=..-+|.-+-|-|..|-= +||...+..|..
T Consensus 8 i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYkF 87 (102)
T 2ypr_A 8 IQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF 87 (102)
T ss_dssp CCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEEE
T ss_pred EeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 3445556789999999999999999999999999988873322 11246789999999988743 345445555543
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=91.10 E-value=0.61 Score=32.38 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
...|..+++.|..+|..|..++..|+..+..|-.+|..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999998887754
No 12
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.53 E-value=0.18 Score=39.72 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=54.6
Q ss_pred CCchHHHHHHhhcCCCCCCceEEcC-CCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhcccc----ceeecCCccee
Q 025781 28 PPPFLLKTYMLIEDPATDNVISWNG-DGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYG----FRKVATSRWEF 101 (248)
Q Consensus 28 ~~~Fl~KL~~ml~d~~~~~iI~W~~-~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG----F~Kv~~~~~eF 101 (248)
....-.=|.++|.||++.++|+|.. ++.-|.+.||++.++-.=. +-=..-||...-|-|..|- -+|+...+..|
T Consensus 8 ~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY 87 (118)
T 2dao_A 8 CRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLF 87 (118)
T ss_dssp CCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEE
T ss_pred chHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEE
Confidence 4445566789999999999999987 5568999999988874333 2224578999999998883 23444455555
Q ss_pred ec
Q 025781 102 CN 103 (248)
Q Consensus 102 ~h 103 (248)
..
T Consensus 88 ~F 89 (118)
T 2dao_A 88 RF 89 (118)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 13
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=90.39 E-value=0.2 Score=38.81 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=48.7
Q ss_pred cCCCCchHHHHHHhhcCCC-CCCceEEcC-CCCeEEEeCchhhhhhhccC-CCCCCChhhHHhhhcccc
Q 025781 25 KSTPPPFLLKTYMLIEDPA-TDNVISWNG-DGTGFVVWQPAEFARDLLPT-LFKHSNFSSFVRQLNTYG 90 (248)
Q Consensus 25 ~~~~~~Fl~KL~~ml~d~~-~~~iI~W~~-~G~sFvI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~YG 90 (248)
.+.......=|.++|.||+ ..++|+|.. +..-|.+.||++.++--=.+ -=..-+|...-|-|..|-
T Consensus 5 ~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 73 (107)
T 1wwx_A 5 SSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY 73 (107)
T ss_dssp CCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 3445666677889999886 678999986 46789999999888743221 113678999999998874
No 14
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=89.30 E-value=0.21 Score=38.52 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=49.7
Q ss_pred chHHHHHHhhcCCC-CCCceEEcCC-CCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhccccc----eeecCCcceee
Q 025781 30 PFLLKTYMLIEDPA-TDNVISWNGD-GTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYGF----RKVATSRWEFC 102 (248)
Q Consensus 30 ~Fl~KL~~ml~d~~-~~~iI~W~~~-G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~ 102 (248)
....=|.++|.||+ .+++|+|... ..-|.+.||++.++--=. +-=..-+|..+-|-|..|-= +||...+..|.
T Consensus 6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~ 85 (103)
T 3jtg_A 6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 85 (103)
T ss_dssp SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence 34455678899987 6789999974 568999999888873222 11146789999999988742 23444444443
No 15
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.14 E-value=1.3 Score=30.29 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~v 191 (248)
...|..+++.|..+|..|..++..|+..+..|-++|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888889999999999999999998888887665
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.07 E-value=0.8 Score=31.00 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 161 DENKRLKKENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 161 ~e~~~LkkEn~~L~~El~~lr~k~~~l~~~v 191 (248)
.+++.|+.||..|..++..++++++.+..-|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444
No 17
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=88.04 E-value=0.27 Score=37.49 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=49.3
Q ss_pred CCCchHHHHHHhhcCCC-CCCceEEcC-CCCeEEEeCchhhhhhhcc-CCCCCCChhhHHhhhccccce
Q 025781 27 TPPPFLLKTYMLIEDPA-TDNVISWNG-DGTGFVVWQPAEFARDLLP-TLFKHSNFSSFVRQLNTYGFR 92 (248)
Q Consensus 27 ~~~~Fl~KL~~ml~d~~-~~~iI~W~~-~G~sFvI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~ 92 (248)
.+...-.=|.++|.||+ +.++|+|.. ++.-|.+.||++.++-.=. +-=..-||...-|-|..|--+
T Consensus 9 ~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 9 QPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred CeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 34556667789999986 589999974 6788999999988874332 122467899999999888644
No 18
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=87.82 E-value=0.22 Score=40.99 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=54.5
Q ss_pred chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccC-CCCCCChhhHHhhhccccce----eecCCcceeec
Q 025781 30 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPT-LFKHSNFSSFVRQLNTYGFR----KVATSRWEFCN 103 (248)
Q Consensus 30 ~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~eF~h 103 (248)
....=|.++|.|+++.++|+|...+.-|.+.|+++.++-.=.+ -=..-+|...-|-|..|-=+ ||...+..|..
T Consensus 7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF 85 (157)
T 1hbx_G 7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 85 (157)
T ss_dssp CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence 3445567889999999999999888899999999888854331 22467899999999887532 44445556654
No 19
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=87.19 E-value=1.4 Score=29.61 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
.+..|..+++.||+||..|.+||..--....+|
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 367889999999999999999988766554444
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.18 E-value=1.6 Score=30.26 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
...|..+++.|..+|..|..++..++..+..|-++|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999888877764
No 21
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=86.91 E-value=0.35 Score=36.31 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHhhcCCCCCCceEEcCC-CCeEEEe--CchhhhhhhccC--CCCCCChhhHHhhhcccc
Q 025781 33 LKTYMLIEDPATDNVISWNGD-GTGFVVW--QPAEFARDLLPT--LFKHSNFSSFVRQLNTYG 90 (248)
Q Consensus 33 ~KL~~ml~d~~~~~iI~W~~~-G~sFvI~--d~~~F~~~vLp~--~Fkh~nfsSFvRQLN~YG 90 (248)
.=|.++|.||++.++|+|... ..-|-+. |+++.++--=.+ .=+.-||...-|-|..|.
T Consensus 6 qFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY 68 (89)
T 1pue_E 6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG 68 (89)
T ss_dssp HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHH
Confidence 346788999999999999864 4668775 788888743332 123668999999998874
No 22
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.26 E-value=1.2 Score=27.34 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|++.++.|-.+|..|..|+.+++..
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 468999999999999999999999864
No 23
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=85.79 E-value=0.16 Score=40.61 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=38.8
Q ss_pred HHHHhhcCCCCCCceEEcCC-CCeEEEeCchhhhhhhccC-CCCCCChhhHHhhhcccc
Q 025781 34 KTYMLIEDPATDNVISWNGD-GTGFVVWQPAEFARDLLPT-LFKHSNFSSFVRQLNTYG 90 (248)
Q Consensus 34 KL~~ml~d~~~~~iI~W~~~-G~sFvI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~YG 90 (248)
=|.++|.|+++.++|+|... +.-|.+.||++.++-.=.+ .=..-||.-.-|-|..|-
T Consensus 10 FLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY 68 (128)
T 2lf8_A 10 YVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYY 68 (128)
Confidence 45688999999999999874 4589999998777632221 112345666666666653
No 24
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=84.94 E-value=2.3 Score=26.54 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
..|++.++.|..++..|..|+.+++....
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 57899999999999999999999998654
No 25
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=83.79 E-value=2.1 Score=31.86 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
..+..+++.|.+||..|..+|..|+.....|-.++..+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45566777778888888888887777777777666543
No 26
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=83.07 E-value=2.2 Score=26.09 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|++.++.|-.+|..|..|+++++..
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 468899999999999999999999864
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.63 E-value=1.3 Score=30.55 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
...|..+++.|..+|..|..++..|+..+..|-.+|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999988877766553
No 28
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=82.41 E-value=2.4 Score=26.13 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|++.++.|-.+|..|..|+++++..
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 478999999999999999999999864
No 29
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=81.94 E-value=3.7 Score=24.48 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
...|.+|+..|++|...|.=|++.+++-
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4567777888888888888888777764
No 30
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=81.91 E-value=2.6 Score=25.93 Aligned_cols=27 Identities=4% Similarity=0.054 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
+.|++.++.|-.+|..|..|+++++..
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 578999999999999999999999864
No 31
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.66 E-value=2.9 Score=26.09 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
....||++|.++...-..|++++++.+.+|.++
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 345789999999999999999999999988653
No 32
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=80.78 E-value=3 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
+.|++.++.|-.+|..|..|+.+++..
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 578899999999999999999999864
No 33
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=80.51 E-value=2.2 Score=31.93 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
.....|..+++.|+.|+..+..|+..++++|+.|
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888888888888888888765
No 34
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=79.97 E-value=3.3 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|++.++.|-.++..|..|+++++..
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 478999999999999999999999864
No 35
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=79.53 E-value=3.4 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
..|+++++.|-.++..|..|+.+++...
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4789999999999999999999998754
No 36
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=79.06 E-value=3.6 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|++.++.|-.+|..|..|+.+++..
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 578999999999999999999999864
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=78.36 E-value=1.2 Score=30.14 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
...|+.++..|..||..|..++..|++.+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999888654
No 38
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=78.26 E-value=4 Score=24.93 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|++.++.|-.++..|..|+++++..
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 468899999999999999999999864
No 39
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=78.06 E-value=2.7 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
....|..+++.|..+|..|..|+..|++.+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467889999999999999999999987643
No 40
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=77.57 E-value=2.3 Score=31.00 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
..+..++..|..||..|..+|..|+.....|-.+|.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777666655443
No 41
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=77.34 E-value=6.4 Score=26.78 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANM 197 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~ 197 (248)
.-.|.++++.|++|+..|.+-+..=++.-..|-.+|-+++.+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~ 53 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777777777766665555555666666665543
No 42
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=75.82 E-value=8.4 Score=26.68 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
++..-+..+++|-+=|..|..||..|+.+.+.|..-=+
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 44556789999999999999999999999988876433
No 43
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=74.69 E-value=16 Score=24.43 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=35.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
...+..|..++..|...|..|..-|...+.++..|-..|.++.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456678888999999999999999999999988888887764
No 44
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.54 E-value=4.8 Score=27.08 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
...+..|..|+..|+.++..|..++..++.+..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999999999999999999987654
No 45
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=73.10 E-value=6.5 Score=24.16 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..|++.++.|-.++..|..|+++++..
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 578899999999999999999999864
No 46
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=71.12 E-value=14 Score=27.25 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
+..-..||+.|..+...|..|++.+++....|..++....
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445679999999999999999999999998888876543
No 47
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=70.55 E-value=5.5 Score=22.89 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025781 165 RLKKENGNLSSELVSMKR 182 (248)
Q Consensus 165 ~LkkEn~~L~~El~~lr~ 182 (248)
+|++.|..|.+|++.+.-
T Consensus 4 rlkqknarlkqeiaaley 21 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEY 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 444455555555444443
No 48
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.36 E-value=6.3 Score=29.20 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
.....|..+|..|+.+...|..|+..|+....++-.-
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 4567899999999999999999999999887766553
No 49
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=67.59 E-value=22 Score=23.04 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
.+.|...+.+|+++|..|.+.-..+.+.+..|.+-+.++-
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 3567788888898888888877777777777777666553
No 50
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=64.53 E-value=18 Score=21.51 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 162 ENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 162 e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
|+..|++|...|..|++.++=.+..|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887666554
No 51
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=63.87 E-value=8.8 Score=27.82 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
.....|..+|..|+.+...|..|+..|+...
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998643
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.65 E-value=17 Score=26.57 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh
Q 025781 159 LRDENKRLKKENGNL--------------SSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 159 L~~e~~~LkkEn~~L--------------~~El~~lr~k~~~l~~~vs~~~ 195 (248)
|.-+++.||.+|..| ..|..++++.+....+-|..++
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554 4444555555544444444433
No 53
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=63.43 E-value=8.7 Score=22.07 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMK 181 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr 181 (248)
..|.+.+.+|++|..+|.-|++.+.
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 4577889999999999999988764
No 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.72 E-value=16 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
.....|..+|..|+.+...|..|+..|++.
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999888865
No 55
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=58.83 E-value=18 Score=21.47 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
+.|+.++.+-..||..|.+|++.+...|
T Consensus 4 aqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 5677888888889999999998887654
No 56
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=58.29 E-value=26 Score=25.68 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
+..-..||+.|.++...+..|++.+++.+..|..+..
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999888888888888888776665554
No 57
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=57.53 E-value=15 Score=30.79 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~v 191 (248)
.+..+.+.+..|+.+|..|.+|-.+|++..++++..+
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666666666666666555543
No 58
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=57.38 E-value=17 Score=21.29 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 171 GNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 171 ~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
+++..||...+++.+.|+.-+.++.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678899999999999998887653
No 59
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=55.84 E-value=23 Score=24.56 Aligned_cols=45 Identities=31% Similarity=0.402 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDND 200 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~~~ 200 (248)
.-.|.+++..|++|+..+++=+..-++.-..|-..|-+++..++|
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345677888888888877776666665556666666666665544
No 60
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=54.87 E-value=24 Score=24.97 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
+..|+.++..|..++..|..|...|+..+..|..-+.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777666666666666666666655443
No 61
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=54.30 E-value=14 Score=30.96 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=28.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
......|..+|++|.++|+.|.+|.+++.++.+
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999998877643
No 62
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.95 E-value=17 Score=22.39 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELV 178 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~ 178 (248)
+....+++.||++|..|..++.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 3445566666666666666554
No 63
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=51.58 E-value=29 Score=24.09 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=38.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANM 197 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~ 197 (248)
.....|..++.+.+.+...|-++|..+..+++.|-.+|..|=..
T Consensus 12 ekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~ 55 (64)
T 3t97_C 12 EKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEES 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999888777543
No 64
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=51.27 E-value=10 Score=31.95 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=45.8
Q ss_pred chHH-HHHHhhcCCCCCCceEEcCCCCeEEE-eCchhhhhhh-ccCCC-CCCChhhHHhh-----hccccc
Q 025781 30 PFLL-KTYMLIEDPATDNVISWNGDGTGFVV-WQPAEFARDL-LPTLF-KHSNFSSFVRQ-----LNTYGF 91 (248)
Q Consensus 30 ~Fl~-KL~~ml~d~~~~~iI~W~~~G~sFvI-~d~~~F~~~v-Lp~~F-kh~nfsSFvRQ-----LN~YGF 91 (248)
.|+. .+|.++=.-. .+...|+++++.|+| .|..-+...| ||... ..-+|++|+.- |.+-||
T Consensus 88 ~fI~k~~Wk~lfgk~-~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 88 EVLSKCAFKIFLNIT-PNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHSSCC-CCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC-CccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 4774 4788887644 457799999999999 7776655544 78766 66789999864 788888
No 65
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.07 E-value=34 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 166 LKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 166 LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
++++|.+.++++..+++++..|-..|.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 678888888888888888877766553
No 66
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=50.94 E-value=13 Score=25.02 Aligned_cols=28 Identities=7% Similarity=0.284 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
+..+..+++.|.+||..|..++..++++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667778888888888888888777654
No 67
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.71 E-value=36 Score=23.14 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=24.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
.....|..+|..|+.+...|..|+..|+...
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888888888887653
No 68
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.86 E-value=29 Score=23.72 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
.....|..+|..|+.+...|..|+..|++..-
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888876543
No 69
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=49.50 E-value=44 Score=28.45 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
..-..||+.|..+...|..|++.|++.+.
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~ 139 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENK 139 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666776666666666666655543
No 70
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.98 E-value=12 Score=21.50 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025781 166 LKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 166 LkkEn~~L~~El~~lr~k~~ 185 (248)
|.=||.+|.+.++.+++++.
T Consensus 5 lefendaleqkiaalkqkia 24 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 44445555555555555544
No 71
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.74 E-value=46 Score=24.21 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
.+..|..|+..|+-.++.+.-+|..|+++..+++.-|.
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777778888888888888777776554
No 72
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.45 E-value=52 Score=23.29 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025781 158 TLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~ 194 (248)
.-.+=+..|+.++..|..|+..+++.+..|...|..+
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566667777777777777777777766666543
No 73
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=46.95 E-value=54 Score=20.91 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=16.1
Q ss_pred hHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKK------ENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 158 ~L~~e~~~Lkk------En~~L~~El~~lr~k~~~l~~~ 190 (248)
.|..|++.|++ |...|.+|+..+.++...|-.-
T Consensus 4 alkselqalkkegfspeelaaleselqalekklaalksk 42 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554 3445555555555554444433
No 74
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.54 E-value=36 Score=25.76 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=18.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
..+..|..+++.|..|+..|.+++..|.-+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555544
No 75
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=46.23 E-value=44 Score=24.29 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
+..-..+|+.|.++...+..|+..|++.+..|..++.
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578889999998888999998887655544433
No 76
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=46.10 E-value=45 Score=19.75 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKC 184 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~ 184 (248)
+.|...++.|+..|.+..+.+..++.+|
T Consensus 4 qalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566777777777777777777777665
No 77
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.57 E-value=74 Score=23.18 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
..+.+..|+.+.+..|..+.++|.....++..|+.-|.+.-.
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888888888888888777665543
No 78
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.69 E-value=62 Score=27.55 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccCCCCC
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLD---LVTKYANMDNDDD 202 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~---~vs~~~~~~~~~~ 202 (248)
....|..+++.|..|...|..|+..++.....+.. +|.++.+...+..
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 45778889999999999999998888887665554 5556666555543
No 79
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.34 E-value=17 Score=24.68 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
.....|..+|..|+.+...|..|+..|++.
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888888888877654
No 80
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.21 E-value=63 Score=20.67 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
.|+.+...|...|..|...+..++..++.|.+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555555555555555444443
No 81
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.23 E-value=73 Score=25.15 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
..|..+++.+.+|...|..|+..++.+++.+..-+.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~ 113 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK 113 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544444433
No 82
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.46 E-value=35 Score=24.44 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 163 NKRLKKENGNLSSELVSMKRKCKELL 188 (248)
Q Consensus 163 ~~~LkkEn~~L~~El~~lr~k~~~l~ 188 (248)
+..|+.++..|..|...++.++..|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 83
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=41.41 E-value=13 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRK 183 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k 183 (248)
.+..|.+||++|++||..|..++.++++.
T Consensus 20 ~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l 48 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEELAQLESEVADL 48 (255)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999998888877766654
No 84
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.38 E-value=95 Score=22.43 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYA 195 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~ 195 (248)
..-.+=+..|+.++..+..++..+++++.+|..-|..+.
T Consensus 48 ~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 48 KKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455667777777777777777777777777666554
No 85
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.34 E-value=74 Score=23.27 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
....|..+++.|+.|+..|..|+..++.....+..
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667777888888888888888888777665544
No 86
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=41.14 E-value=0.18 Score=39.07 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
...|..+++.|+.||..|..|+..++++|++|+.+...
T Consensus 67 ~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~s 104 (107)
T 3a5t_A 67 KAELQQEVEKLASENASMKLELDALRSKYEALQNFART 104 (107)
T ss_dssp HTTTSSTTTTTTSTTSHHHHTTTSSSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888999999999999999999999876543
No 87
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=41.08 E-value=31 Score=24.53 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKE 186 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~ 186 (248)
...|..+++.|..+...|..+...++.+...
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777666544
No 88
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=40.41 E-value=42 Score=25.48 Aligned_cols=22 Identities=36% Similarity=0.294 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSEL 177 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El 177 (248)
...|..++++|+.||+.|.+|-
T Consensus 67 v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 89
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.39 E-value=39 Score=29.67 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMD 198 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~ 198 (248)
..+..|..++..|...|..|..++..++++...|..-|.++..++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346678888888888888888888888888888888888877764
No 90
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.49 E-value=32 Score=24.25 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
....|...++.|..||..|..++..|+...+
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666665544
No 91
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.43 E-value=80 Score=23.36 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
..|+.++..|+.+...|..|+..+.+..+.+-.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666665554443
No 92
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=37.89 E-value=20 Score=30.29 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=44.8
Q ss_pred chHH-HHHHhhcCCCCCCceEEcCCCCeEEE-eCchhhhhhh-ccCCCCCCChhhHHhh-----hccccce
Q 025781 30 PFLL-KTYMLIEDPATDNVISWNGDGTGFVV-WQPAEFARDL-LPTLFKHSNFSSFVRQ-----LNTYGFR 92 (248)
Q Consensus 30 ~Fl~-KL~~ml~d~~~~~iI~W~~~G~sFvI-~d~~~F~~~v-Lp~~Fkh~nfsSFvRQ-----LN~YGF~ 92 (248)
.|+. .+|.++=.- ..+...|+++++.|+| .|..-+...| ||.-...-+|++|+.- |.+-||.
T Consensus 85 ~fI~k~~Wk~lFgk-~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 85 DVIAKVAFKMYLGI-TPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHTHHHHHHSC-CCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHhCC-CCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 3663 457777554 3468899999999999 7776555433 6766667789999854 7888888
No 93
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=36.75 E-value=45 Score=18.89 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSSELVSM 180 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El~~l 180 (248)
.|.+|+-.|+-|..+|..|+..+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 35566666666666666665443
No 94
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.33 E-value=84 Score=20.08 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGN 172 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~ 172 (248)
..+.|+.+++.|++.|..
T Consensus 11 evaslenenetlkkknlh 28 (49)
T 3he5_A 11 EVASLENENETLKKKNLH 28 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHhccc
Confidence 456677777777776654
No 95
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=33.11 E-value=11 Score=28.74 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=37.2
Q ss_pred HHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccC-----CCCCCChhhHHhhhc
Q 025781 35 TYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPT-----LFKHSNFSSFVRQLN 87 (248)
Q Consensus 35 L~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~-----~Fkh~nfsSFvRQLN 87 (248)
|+.+...=. .=.|+|-+|..+|+|.....-+..+|-. -|+-..|..|.-.|+
T Consensus 32 I~~lFs~fg-gv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ty~e~~~~l~ 88 (100)
T 1whv_A 32 LYQLFSAFG-NIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKQ 88 (100)
T ss_dssp HHHHHTTTC-SCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEEEHHHHHHHHC
T ss_pred HHHHhhccC-CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHHhHHHHh
Confidence 344444322 4468999999999999999888887763 367677777766654
No 96
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=32.75 E-value=68 Score=19.08 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMK 181 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr 181 (248)
+..+.+|+..+++|...+.=||+..+
T Consensus 4 laaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 4 LAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666665554
No 97
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=32.67 E-value=67 Score=24.72 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVS 179 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~ 179 (248)
...|..++.+|+-||..|.+.|.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999999988863
No 98
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.89 E-value=1.5e+02 Score=21.54 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025781 166 LKKENGNLSSELVSMKRKCKELL 188 (248)
Q Consensus 166 LkkEn~~L~~El~~lr~k~~~l~ 188 (248)
|.+||..|..|...-+.....|+
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444444
No 99
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.62 E-value=1.1e+02 Score=20.46 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 160 RDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
...+..|..+...+..++.+.-+.|+.|++.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~Llni 36 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNV 36 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556666666666666543
No 100
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.59 E-value=1.1e+02 Score=22.03 Aligned_cols=36 Identities=25% Similarity=0.187 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
....|+.+++.|--|+..|..|+..+++....+-.-
T Consensus 31 vk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 31 VKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888889899999999988888776655443
No 101
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=30.75 E-value=1.1e+02 Score=23.79 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025781 173 LSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 173 L~~El~~lr~k~~~l~~~vs 192 (248)
..+|++.++++|+.+++-+.
T Consensus 66 ~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 66 LERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777766665443
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.48 E-value=1.1e+02 Score=23.67 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSS 175 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~ 175 (248)
.|..+++.|+.+...|..
T Consensus 19 ~Lkreie~lk~ele~l~~ 36 (120)
T 3i00_A 19 RLYREISGLKAQLENMKT 36 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 103
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.84 E-value=1.3e+02 Score=23.48 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLV 191 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~v 191 (248)
...|..|++.|.++.+....|+.++|..++.+-.-+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 466777777777777777777777777766554433
No 104
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.81 E-value=51 Score=28.90 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=30.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 153 LSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 153 ~~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
......|..+|+.|+.+...+++||.+++...++|.+
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456778888888888888999999999988888765
No 105
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.68 E-value=1.2e+02 Score=20.43 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
.+|.+-+-.|+.+...|.+|..+|++..+
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888888777776543
No 106
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.60 E-value=1.2e+02 Score=23.34 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
....|..++..|+..+..|..-|..+.+.++.|
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 345677777777777777777777777776544
No 107
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.02 E-value=1.1e+02 Score=21.71 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKE 186 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~ 186 (248)
...|..++..|..|...|..|...|+++.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777777777777777777777776554
No 108
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=27.91 E-value=1.4e+02 Score=21.50 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
+.+.|..-+.+|.+|...|...+..++.+...|-.
T Consensus 40 G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 40 GHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777666543
No 109
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=27.63 E-value=1.6e+02 Score=20.54 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAN 196 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~ 196 (248)
+..+.+++..|++........+...++++.+|.+-|.+.+.
T Consensus 12 Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv 52 (65)
T 3t97_B 12 LDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLI 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45667899999999999999999999999988887765543
No 110
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.30 E-value=1e+02 Score=26.06 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKE 186 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~ 186 (248)
..+..++..|..+|..|.++..++..++++
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555443
No 111
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.00 E-value=1.1e+02 Score=22.84 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 025781 160 RDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDNDDD 202 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~~~~~~ 202 (248)
+.....|++....|..||.+..+.-+.|..++..|..++...|
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD 56 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGD 56 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 4566778888888888888999999999999999999888765
No 112
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.76 E-value=1.4e+02 Score=19.69 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=25.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
.....|...|++|-.-......||..|+...++|
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777888888887777888888887777665
No 113
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=26.44 E-value=81 Score=19.27 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVS 179 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~ 179 (248)
.+...|..+-+.|++.++.|..-|..
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666555543
No 114
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=25.79 E-value=1.1e+02 Score=26.15 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred cee--ecCCccCCchhhhhcccc
Q 025781 99 WEF--CNQMFRKGEKDLLCKIRR 119 (248)
Q Consensus 99 ~eF--~h~~F~rg~~~lL~~IkR 119 (248)
-+| .||.|--.+++||..|+=
T Consensus 37 ~~yL~~~PdFf~~~~~Ll~~L~l 59 (252)
T 3e98_A 37 AAYLSQHPEFFVEHDELIPELRI 59 (252)
T ss_dssp -----------------------
T ss_pred HHHHHhCCHHHhhCHHHHHhCCC
Confidence 345 699999999999988865
No 115
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=25.30 E-value=1.3e+02 Score=20.72 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
...+.|..=|..|..|.-.|+++|.+|+..+-
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 34444554445555555555555555554443
No 116
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.01 E-value=1.4e+02 Score=21.53 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025781 159 LRDENKRLKKENGNLSSELVSM 180 (248)
Q Consensus 159 L~~e~~~LkkEn~~L~~El~~l 180 (248)
+..+++.|+++|..|..+|..|
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555544
No 117
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=24.96 E-value=1.2e+02 Score=18.23 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 162 ENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 162 e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
|+..+.-|+..+..|++..+.++..+-+++..
T Consensus 3 eiaaieyeqaaikeeiaaikdkiaaikeyiaa 34 (36)
T 1bb1_A 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKEYIAA 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566778888999999999998888887764
No 118
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.66 E-value=1.4e+02 Score=19.03 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
..|.+.+.++-+|...-...++.++.+..+|...
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888888888888888888888888877653
No 119
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.53 E-value=1.9e+02 Score=20.44 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 156 YNTLRDENKRLKKENGNLSSELVSMKRKCK 185 (248)
Q Consensus 156 ~~~L~~e~~~LkkEn~~L~~El~~lr~k~~ 185 (248)
++.++.+|..|......|..+|..-+.+..
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554433
No 120
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=24.50 E-value=22 Score=27.09 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=31.0
Q ss_pred CceEEcCCCCeEEEeCchhhhhhhccC-----CCCCCChhhHHhhh
Q 025781 46 NVISWNGDGTGFVVWQPAEFARDLLPT-----LFKHSNFSSFVRQL 86 (248)
Q Consensus 46 ~iI~W~~~G~sFvI~d~~~F~~~vLp~-----~Fkh~nfsSFvRQL 86 (248)
=.|+|-+|..+|+|.....-+..+|-. -|+-..|..|.-.|
T Consensus 32 v~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ty~e~~~~l 77 (101)
T 3ctr_A 32 IQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRK 77 (101)
T ss_dssp EEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCCHHHHHC--
T ss_pred EEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHHhHHHH
Confidence 359999999999999988888877752 36767777776555
No 121
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=24.44 E-value=1.2e+02 Score=18.18 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 163 NKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 163 ~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
+..++.|+..+..|+...++.+..+-.++..
T Consensus 4 iaaikeeqaaieeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777776666555543
No 122
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.94 E-value=2.2e+02 Score=22.95 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~ 189 (248)
..|.+|+..|.-++.++...+.+++..++.|++
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666665
No 123
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=23.78 E-value=2e+02 Score=22.47 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 158 TLRDENKRLKKENGNLSSELVSMKRKCKELLDLVT 192 (248)
Q Consensus 158 ~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs 192 (248)
.+++.++.+-..+..+..|++++++..-.|...|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~ 52 (125)
T 4g2k_A 18 QIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLR 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34444554444445555555555554444443333
No 124
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.66 E-value=2.2e+02 Score=20.77 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDL 190 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~ 190 (248)
....|..+++.+..|...|..|...++....+...+
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~l 74 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888888888776554443
No 125
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.57 E-value=1.3e+02 Score=27.65 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~ 182 (248)
..|..++..|..+...+..|+..+++
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 126
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=23.27 E-value=69 Score=26.81 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=11.1
Q ss_pred eEEcCC-CCeEEEe
Q 025781 48 ISWNGD-GTGFVVW 60 (248)
Q Consensus 48 I~W~~~-G~sFvI~ 60 (248)
|+|..+ |.+|+|.
T Consensus 51 vsW~~~lgsGF~i~ 64 (186)
T 3q4f_C 51 VSWEKTLESGFVIT 64 (186)
T ss_dssp EEESSCGGGEEEEE
T ss_pred EEeccCCCcceEEE
Confidence 699998 8899985
No 127
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.24 E-value=2.1e+02 Score=21.62 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 025781 157 NTLRDENKRLKK-------ENGNLSSELVSMKRKCKELLD 189 (248)
Q Consensus 157 ~~L~~e~~~Lkk-------En~~L~~El~~lr~k~~~l~~ 189 (248)
..|..++.+|+. ....|..||.+++..++.|+.
T Consensus 47 s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 47 SRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555 344555566666666666554
No 128
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.05 E-value=1.7e+02 Score=24.22 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 160 RDENKRLKKENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 160 ~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
...+..|++++..|..++...+.++..+.+.|..
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999888887776653
No 129
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.02 E-value=2.2e+02 Score=20.39 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKEL 187 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l 187 (248)
..++.++.+|..|+.....|..+|..-+.+...+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665544433
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.99 E-value=2.1e+02 Score=23.92 Aligned_cols=7 Identities=14% Similarity=0.510 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 025781 186 ELLDLVT 192 (248)
Q Consensus 186 ~l~~~vs 192 (248)
.|++.|+
T Consensus 76 DL~e~LT 82 (190)
T 4emc_A 76 DLYEYLC 82 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 3444444
No 131
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.94 E-value=1.6e+02 Score=18.67 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 025781 155 EYNTLRDENKRLKKENGNLSSELV 178 (248)
Q Consensus 155 ~~~~L~~e~~~LkkEn~~L~~El~ 178 (248)
.+..|+.|++.|.+....|.+.+.
T Consensus 21 elaaleselqalekklaalksklq 44 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444443
No 132
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.86 E-value=1.7e+02 Score=18.93 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=19.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHH
Q 025781 161 DENKRLKKEN-GNLSSELVSMKRK-CKELLDLVTK 193 (248)
Q Consensus 161 ~e~~~LkkEn-~~L~~El~~lr~k-~~~l~~~vs~ 193 (248)
.++++||+|. ..+.+||++|++. ++.+.+.+.+
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666653 3466677777754 4555555543
No 133
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.71 E-value=2.6e+02 Score=21.81 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 169 ENGNLSSELVSMKRKCKELLDLVTK 193 (248)
Q Consensus 169 En~~L~~El~~lr~k~~~l~~~vs~ 193 (248)
++..+.+|+..++++++.|..-+.+
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 134
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.49 E-value=84 Score=23.58 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025781 164 KRLKKENGNLSSELVSMKRKCKELL 188 (248)
Q Consensus 164 ~~LkkEn~~L~~El~~lr~k~~~l~ 188 (248)
++|+.+...|.+|+..++++.+.|.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555444
No 135
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=21.40 E-value=84 Score=24.48 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025781 164 KRLKKENGNLSSELVSMKR 182 (248)
Q Consensus 164 ~~LkkEn~~L~~El~~lr~ 182 (248)
..|....+.|..+|..++.
T Consensus 19 ~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 19 SALNTKIRALQGSLENMSK 37 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 136
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.17 E-value=2.2e+02 Score=20.00 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhccCCCC
Q 025781 157 NTLRDENKRLKKENGNLSSELVSMKRKCKELLDL-------VTKYANMDNDD 201 (248)
Q Consensus 157 ~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~-------vs~~~~~~~~~ 201 (248)
..+...+..|..+...++.++...-+.|+.|++. |+.|..-.++|
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555556666666666666666667766654 34555444444
No 137
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.71 E-value=90 Score=22.34 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025781 154 SEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANM 197 (248)
Q Consensus 154 ~~~~~L~~e~~~LkkEn~~L~~El~~lr~k~~~l~~~vs~~~~~ 197 (248)
.....|+..++.|+-....|..|....+++..+-+..|...+..
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677888888888889999999988888888777777766664
Done!