BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025783
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 126 EIDASLDTVWHILTDYEK-LADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKG 184
EI D V IL Y K LA++ N + FV Q+G QNL+F N KG
Sbjct: 206 EIKRGKDKV-KILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPSQLGPQNLSFAKIANFKG 264
Query: 185 VLDC--YEKDLEIFPSGKKRDIEFKMIEGDFQLFEGK 219
D YE + F S + D + K G F F K
Sbjct: 265 RQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEK 301
>pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4B|B Chain B, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4D|A Chain A, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|B Chain B, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|C Chain C, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
Length = 367
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|C Chain C, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1GL3|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
pdb|1GL3|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
Length = 367
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>pdb|1EJ6|A Chain A, Reovirus Core
pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1289
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 157 VEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIEFKMIEGDFQLF 216
+EK NF+ +GQ FNA+ V +CY F + + F
Sbjct: 1028 MEKRGNFI----VGQNCSLVIPGFNAQDVFNCYFNSALAFSTEDVNAAMIPQVSAQFDAT 1083
Query: 217 EGKWSIEQV 225
+G+W+++ V
Sbjct: 1084 KGEWTLDMV 1092
>pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|B Chain B, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|C Chain C, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|D Chain D, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
Length = 371
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L NS+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCNSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|2NN5|A Chain A, Structure Of Conserved Protein Of Unknown Function Ef2215
From Enterococcus Faecalis
Length = 184
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 127 IDASLDTVWHILTDYEKLADFVPNLAVSQV 156
I AS T+W LT+ +KL + P L + ++
Sbjct: 44 ISASPQTIWRYLTETDKLKQWFPELEIGEL 73
>pdb|2VGQ|A Chain A, Crystal Structure Of Human Ips-1 Card
Length = 477
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 115 GRNSRRIRSKIEIDASLDTVWHILTDYEK----LADFVPNLAVSQVVEKNDNFVRLYQ 168
R+ R+R+ + + DT+WH+ ++ + F+ L ++V+ D +YQ
Sbjct: 420 ARDQDRLRATCTLSGNRDTLWHLFNTLQRRPGWVEYFIAALRGCELVDLADEVASVYQ 477
>pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
pdb|3UW3|B Chain B, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
Length = 377
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I + +S+ + K++ D LD + IL VPN
Sbjct: 270 DGLCVRIGAMRCHSQALTIKLKKDVPLDEINGILASANDWVKVVPN 315
>pdb|3IZ6|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 142
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 101 SLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN 160
S H G+ +E K+G +++ S I A + ++ + +K+A FVPN +E+N
Sbjct: 43 SSHAKGIVLE--KIGIEAKQPNSAIRKCARV----QLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 161 DNFVRLYQIGQQNLAFG 177
D V + G++ A G
Sbjct: 97 DE-VLIAGFGRKGHAVG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,009,990
Number of Sequences: 62578
Number of extensions: 208250
Number of successful extensions: 447
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 17
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)