Query 025783
Match_columns 248
No_of_seqs 136 out of 424
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2867 Oligoketide cyclase/li 99.9 4.7E-22 1E-26 166.9 8.1 111 120-243 3-115 (146)
2 PRK10724 hypothetical protein; 99.8 2.8E-20 6E-25 157.1 12.9 110 120-243 16-127 (158)
3 cd08866 SRPBCC_11 Ligand-bindi 99.8 4E-18 8.7E-23 136.0 15.1 109 121-236 1-111 (144)
4 PF03364 Polyketide_cyc: Polyk 99.7 2.1E-17 4.6E-22 130.0 9.8 99 127-239 1-103 (130)
5 cd07813 COQ10p_like Coenzyme Q 99.7 1E-16 2.2E-21 128.1 11.6 108 122-243 2-111 (138)
6 cd08860 TcmN_ARO-CYC_like N-te 99.6 1.1E-14 2.3E-19 121.0 13.9 109 120-241 2-114 (146)
7 cd08861 OtcD1_ARO-CYC_like N-t 99.6 1.3E-13 2.9E-18 109.6 13.7 109 121-243 1-114 (142)
8 cd07819 SRPBCC_2 Ligand-bindin 99.5 3E-13 6.5E-18 106.1 14.2 107 120-240 3-113 (140)
9 cd07820 SRPBCC_3 Ligand-bindin 99.3 2.5E-11 5.3E-16 97.7 10.3 110 122-244 2-116 (137)
10 cd07824 SRPBCC_6 Ligand-bindin 99.3 2.7E-11 5.9E-16 98.4 10.6 110 119-241 1-113 (146)
11 cd08865 SRPBCC_10 Ligand-bindi 99.3 4.9E-11 1.1E-15 92.6 11.2 105 121-240 1-109 (140)
12 cd07817 SRPBCC_8 Ligand-bindin 99.3 4.2E-11 9.1E-16 94.0 10.8 104 121-240 2-106 (139)
13 cd07818 SRPBCC_1 Ligand-bindin 99.2 1E-10 2.2E-15 94.0 10.7 110 119-242 2-119 (150)
14 cd05018 CoxG Carbon monoxide d 99.2 3.2E-10 6.9E-15 89.3 12.5 107 120-239 2-112 (144)
15 cd07821 PYR_PYL_RCAR_like Pyra 99.2 5.4E-10 1.2E-14 86.9 12.8 108 120-242 2-114 (140)
16 PF10604 Polyketide_cyc2: Poly 99.1 4.4E-09 9.6E-14 81.9 15.4 105 120-239 3-108 (139)
17 cd07812 SRPBCC START/RHO_alpha 99.0 5E-09 1.1E-13 78.3 12.2 110 122-243 2-114 (141)
18 cd08876 START_1 Uncharacterize 99.0 2.8E-08 6.1E-13 84.2 17.1 120 101-229 22-155 (195)
19 cd07814 SRPBCC_CalC_Aha1-like 99.0 7.4E-09 1.6E-13 81.0 12.6 107 121-240 2-111 (139)
20 cd08862 SRPBCC_Smu440-like Lig 99.0 1.3E-08 2.8E-13 79.8 12.0 101 120-238 2-106 (138)
21 KOG3177 Oligoketide cyclase/li 98.9 1.4E-09 3E-14 96.7 5.8 106 120-239 69-180 (227)
22 cd07822 SRPBCC_4 Ligand-bindin 98.9 4.2E-08 9.1E-13 76.3 12.5 103 120-235 1-107 (141)
23 cd07823 SRPBCC_5 Ligand-bindin 98.7 1.4E-07 3E-12 76.7 11.4 109 121-242 1-116 (146)
24 cd07825 SRPBCC_7 Ligand-bindin 98.6 1E-06 2.2E-11 70.1 12.2 103 120-236 1-111 (144)
25 cd07816 Bet_v1-like Ligand-bin 98.5 4.5E-06 9.7E-11 69.1 13.8 108 120-239 2-119 (148)
26 COG5637 Predicted integral mem 98.1 1.2E-05 2.6E-10 70.8 7.9 109 118-241 69-178 (217)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.1 5.9E-05 1.3E-09 62.5 11.4 106 115-239 7-112 (157)
28 cd08898 SRPBCC_CalC_Aha1-like_ 98.0 9.2E-05 2E-09 58.6 11.4 105 120-240 2-115 (145)
29 cd08893 SRPBCC_CalC_Aha1-like_ 97.9 0.00018 4E-09 56.1 11.2 104 121-240 2-111 (136)
30 cd08897 SRPBCC_CalC_Aha1-like_ 97.9 0.00025 5.4E-09 56.7 12.0 101 121-237 2-107 (133)
31 cd08873 START_STARD14_15-like 97.9 0.00043 9.4E-09 62.7 14.3 138 99-245 58-208 (235)
32 cd08894 SRPBCC_CalC_Aha1-like_ 97.8 0.001 2.2E-08 53.6 13.8 102 121-236 2-107 (139)
33 cd08896 SRPBCC_CalC_Aha1-like_ 97.8 0.0013 2.9E-08 53.3 14.0 102 121-235 2-113 (146)
34 COG3427 Carbon monoxide dehydr 97.7 0.00058 1.3E-08 58.1 11.9 98 120-232 2-105 (146)
35 PF06240 COXG: Carbon monoxide 97.7 0.0011 2.4E-08 54.1 12.6 101 123-235 1-104 (140)
36 cd08914 START_STARD15-like Lip 97.7 0.0014 3E-08 59.6 13.7 70 99-169 59-128 (236)
37 cd08913 START_STARD14-like Lip 97.6 0.0029 6.3E-08 57.4 15.5 69 100-169 63-131 (240)
38 cd08874 START_STARD9-like C-te 97.6 0.0011 2.4E-08 58.6 12.4 72 99-170 25-97 (205)
39 cd08877 START_2 Uncharacterize 97.6 0.00099 2.1E-08 58.1 11.9 61 103-163 29-90 (215)
40 cd08900 SRPBCC_CalC_Aha1-like_ 97.4 0.0071 1.5E-07 48.8 13.9 103 121-236 2-113 (143)
41 PF08327 AHSA1: Activator of H 97.4 0.0025 5.3E-08 49.1 10.5 94 128-238 1-98 (124)
42 cd08895 SRPBCC_CalC_Aha1-like_ 97.4 0.0092 2E-07 48.4 14.3 109 121-238 2-120 (146)
43 cd08901 SRPBCC_CalC_Aha1-like_ 97.3 0.0054 1.2E-07 49.4 12.0 100 121-239 2-102 (136)
44 cd08905 START_STARD1-like Chol 97.3 0.003 6.6E-08 55.4 10.5 62 102-163 32-94 (209)
45 cd08869 START_RhoGAP C-termina 97.2 0.01 2.3E-07 51.5 13.3 119 103-231 26-159 (197)
46 cd08911 START_STARD7-like Lipi 97.2 0.0098 2.1E-07 52.0 13.1 62 99-160 24-87 (207)
47 cd08891 SRPBCC_CalC Ligand-bin 97.2 0.012 2.5E-07 48.0 12.3 102 121-240 2-118 (149)
48 cd08868 START_STARD1_3_like Ch 97.2 0.013 2.8E-07 50.8 13.3 62 104-165 32-95 (208)
49 cd07826 SRPBCC_CalC_Aha1-like_ 97.1 0.025 5.4E-07 45.9 14.1 101 121-234 2-108 (142)
50 cd00177 START Lipid-binding ST 97.1 0.018 3.9E-07 47.2 13.2 62 102-163 21-83 (193)
51 cd08870 START_STARD2_7-like Li 97.1 0.021 4.5E-07 49.8 13.9 63 100-162 26-94 (209)
52 cd08908 START_STARD12-like C-t 97.0 0.011 2.4E-07 52.5 11.1 58 104-163 35-94 (204)
53 cd08906 START_STARD3-like Chol 96.9 0.0026 5.6E-08 56.0 7.0 60 104-163 34-94 (209)
54 PF00407 Bet_v_1: Pathogenesis 96.9 0.024 5.2E-07 47.7 12.5 110 118-239 3-122 (151)
55 cd08892 SRPBCC_Aha1 Putative h 96.8 0.034 7.4E-07 44.3 11.5 96 121-238 2-100 (126)
56 cd08871 START_STARD10-like Lip 96.3 0.12 2.5E-06 45.3 13.2 63 100-162 27-91 (222)
57 COG3832 Uncharacterized conser 96.3 0.13 2.9E-06 42.7 12.6 99 116-228 5-107 (149)
58 smart00234 START in StAR and p 95.8 0.34 7.3E-06 41.1 13.0 58 106-163 30-90 (206)
59 cd08903 START_STARD5-like Lipi 95.4 0.11 2.3E-06 45.6 8.8 63 103-165 29-94 (208)
60 cd08909 START_STARD13-like C-t 95.1 0.44 9.5E-06 42.5 11.8 116 104-229 35-164 (205)
61 PTZ00220 Activator of HSP-90 A 95.0 0.22 4.8E-06 40.4 8.9 90 127-238 1-95 (132)
62 cd08872 START_STARD11-like Cer 94.7 0.2 4.4E-06 45.1 8.9 65 99-163 29-97 (235)
63 cd08867 START_STARD4_5_6-like 93.1 0.71 1.5E-05 39.9 8.9 62 103-164 29-93 (206)
64 cd08904 START_STARD6-like Lipi 90.0 2.4 5.1E-05 37.6 8.9 68 103-170 29-98 (204)
65 cd08863 SRPBCC_DUF1857 DUF1857 90.0 1.6 3.5E-05 37.0 7.5 42 129-170 17-60 (141)
66 cd08910 START_STARD2-like Lipi 87.0 2.4 5.3E-05 37.1 6.9 60 99-160 28-89 (207)
67 COG4276 Uncharacterized conser 86.5 17 0.00036 31.3 11.3 111 120-242 3-120 (153)
68 PF08982 DUF1857: Domain of un 84.6 3.8 8.3E-05 34.8 6.7 43 128-170 17-61 (149)
69 PF01852 START: START domain; 82.3 28 0.00062 29.1 12.9 118 105-231 28-164 (206)
70 PF10698 DUF2505: Protein of u 82.0 29 0.00062 29.0 12.2 119 122-244 2-132 (159)
71 cd08902 START_STARD4-like Lipi 69.4 11 0.00025 33.8 5.5 59 105-163 32-91 (202)
72 PF02713 DUF220: Domain of unk 66.1 3.2 6.9E-05 31.8 1.2 23 203-225 19-42 (74)
73 cd08907 START_STARD8-like C-te 50.0 37 0.0008 30.6 5.3 55 104-161 35-92 (205)
74 PLN00188 enhanced disease resi 39.4 83 0.0018 33.4 6.6 55 119-173 227-283 (719)
75 PF10741 T2SM_b: Type II secre 27.1 87 0.0019 24.5 3.6 34 115-148 44-77 (110)
76 COG4698 Uncharacterized protei 25.2 1E+02 0.0022 27.7 3.9 42 99-148 111-152 (197)
No 1
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=99.86 E-value=4.7e-22 Score=166.93 Aligned_cols=111 Identities=21% Similarity=0.401 Sum_probs=98.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeeceEEEEeEEEEeeccccccCCC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~ 198 (248)
+++.+..|+++|++||++|+|+++||+|+|||..++|+++++..+.+ ++||++++ +..|+++|++.-++
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i--~e~F~Trv~~~~~~-------- 72 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGI--RETFTTRVTLKPTA-------- 72 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhe--eeeeeeeeeecCch--------
Confidence 67899999999999999999999999999999999999999988777 88999997 79999999995322
Q ss_pred CCceEEEEEeecCCCCceeeeEEEEE-cCCCeeEEEeccceecccC
Q 025783 199 GKKRDIEFKMIEGDFQLFEGKWSIEQ-VTYSCLQIIQNNIFVKLCI 243 (248)
Q Consensus 199 g~~rrI~f~lVeGDFK~feG~W~fep-~~~Gt~~vl~~~~~~~~~~ 243 (248)
+.|++++++||||.+.|.|+|+| .+++|.+.|..++.-+-.|
T Consensus 73 ---~~I~~~l~~GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~l 115 (146)
T COG2867 73 ---RSIDMKLIDGPFKYLKGGWQFTPLSEDACKVEFFLDFEFKSRL 115 (146)
T ss_pred ---hhhhhhhhcCChhhhcCceEEEECCCCceEEEEEEEeeehhHH
Confidence 48999999999999999999999 5567899998888765443
No 2
>PRK10724 hypothetical protein; Provisional
Probab=99.84 E-value=2.8e-20 Score=157.15 Aligned_cols=110 Identities=15% Similarity=0.360 Sum_probs=97.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeeceEEEEeEEEEeeccccccCCC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~ 198 (248)
+++.++.|++|+++||++|.|+|+||+|+|||++++|+++.++..++ .++|.+++ ..+|++++++. |
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~--~~~f~srv~~~---------~- 83 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGI--SKTFTTRNQLT---------S- 83 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCc--cEEEEEEEEec---------C-
Confidence 78999999999999999999999999999999999999998887766 58998886 68999998883 2
Q ss_pred CCceEEEEEeecCCCCceeeeEEEEEcCC-CeeEEEeccceecccC
Q 025783 199 GKKRDIEFKMIEGDFQLFEGKWSIEQVTY-SCLQIIQNNIFVKLCI 243 (248)
Q Consensus 199 g~~rrI~f~lVeGDFK~feG~W~fep~~~-Gt~~vl~~~~~~~~~~ 243 (248)
+++|.+++++|||+.|+|.|+|+|.++ +|.+.+..++.++-++
T Consensus 84 --~~~I~~~~~~GpF~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l 127 (158)
T PRK10724 84 --NQSILMQLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKL 127 (158)
T ss_pred --CCEEEEEecCCChhhccceEEEEECCCCCEEEEEEEEEEEchHH
Confidence 258999999999999999999999874 6999999888876543
No 3
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.79 E-value=4e-18 Score=135.97 Aligned_cols=109 Identities=39% Similarity=0.718 Sum_probs=89.7
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCCCC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~ 200 (248)
|++++.|++|+++||++|+||++||+|+|+|.+++++++.++..++.|.+..++ ++..|..++++++++. .+ .
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~----~~--~ 73 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGI-LFFKFEARVVLELRER----EE--F 73 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEE-EeeeeeEEEEEEEEEe----cC--C
Confidence 568999999999999999999999999999999999999888777777776655 2356777777777762 11 1
Q ss_pred ceEEEEEeecCCCCceeeeEEEEEcCC--CeeEEEecc
Q 025783 201 KRDIEFKMIEGDFQLFEGKWSIEQVTY--SCLQIIQNN 236 (248)
Q Consensus 201 ~rrI~f~lVeGDFK~feG~W~fep~~~--Gt~~vl~~~ 236 (248)
++.|.|++++|+|+.|+|.|+|++.++ ||++.....
T Consensus 74 ~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~ 111 (144)
T cd08866 74 PRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVE 111 (144)
T ss_pred CceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEE
Confidence 378999999999999999999999987 576655443
No 4
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.73 E-value=2.1e-17 Score=130.00 Aligned_cols=99 Identities=24% Similarity=0.485 Sum_probs=81.6
Q ss_pred EcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeeceEEEEeEEEEeeccccccCCCCCceEEE
Q 025783 127 IDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIE 205 (248)
Q Consensus 127 V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~~rrI~ 205 (248)
|+||+++||++++|||+||+|+|+|.+++|+++.++.+++ .++....+ ...+.+++..... ..|.
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------~~~~ 66 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGI--KRSWTSRVTEDPP------------ERIR 66 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTT--CEEEEEEEEEECT------------TTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCE--EEEEEEEEEEEEe------------eeee
Confidence 7899999999999999999999999999999999887665 44555554 4667666555311 2399
Q ss_pred EEeecCCCCceeeeEEEEEcCC---CeeEEEecccee
Q 025783 206 FKMIEGDFQLFEGKWSIEQVTY---SCLQIIQNNIFV 239 (248)
Q Consensus 206 f~lVeGDFK~feG~W~fep~~~---Gt~~vl~~~~~~ 239 (248)
+++++|+|+.++|.|+|++.++ ||..+++.+..+
T Consensus 67 ~~~~~g~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~ 103 (130)
T PF03364_consen 67 FEQISGPFKSFEGSWRFEPLGGNEGGTRTRVTYDYEV 103 (130)
T ss_dssp EESSETTEEEEEEEEEEEEETTECCEEEEEEEEEEEE
T ss_pred eeecCCCchhcEEEEEEEECCCCcCCCEEEEEEEEEE
Confidence 9999999999999999999998 888888877776
No 5
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.71 E-value=1e-16 Score=128.14 Aligned_cols=108 Identities=19% Similarity=0.426 Sum_probs=86.1
Q ss_pred EEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeeceEEEEeEEEEeeccccccCCCCC
Q 025783 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (248)
Q Consensus 122 ~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~ 200 (248)
+.++.|++|+++||++++|+++||+|+|+|.+++++++.++...+ .+++..++ ...+.+++.++ +
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~--- 67 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGGI--RESFTSRVTLV---------P--- 67 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeeccc--cEEEEEEEEec---------C---
Confidence 578899999999999999999999999999999999998876554 33443322 34555554442 2
Q ss_pred ceEEEEEeecCCCCceeeeEEEEEcC-CCeeEEEeccceecccC
Q 025783 201 KRDIEFKMIEGDFQLFEGKWSIEQVT-YSCLQIIQNNIFVKLCI 243 (248)
Q Consensus 201 ~rrI~f~lVeGDFK~feG~W~fep~~-~Gt~~vl~~~~~~~~~~ 243 (248)
+++|.+++++|+|+.++|.|+|+|.+ ++|++.+..++-.+-++
T Consensus 68 ~~~i~~~~~~g~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l 111 (138)
T cd07813 68 PESIEAELVDGPFKHLEGEWRFKPLGENACKVEFDLEFEFKSRL 111 (138)
T ss_pred CCEEEEEecCCChhhceeEEEEEECCCCCEEEEEEEEEEECCHH
Confidence 36899999999999999999999998 67888888777766443
No 6
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.62 E-value=1.1e-14 Score=120.96 Aligned_cols=109 Identities=23% Similarity=0.390 Sum_probs=84.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEee--cceeeceEEEEeEEEEeeccccccC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQ--QNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~--~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
+.+.++.|++|+++||++|+|+++||+|+|+|+.++++++.+....+ ..+.. .++ .+.++++++++
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~--~~~w~s~~~~~--------- 70 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGT--VWSWVSERTLD--------- 70 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCE--EEEEEEEEEec---------
Confidence 45789999999999999999999999999999999999987765433 22232 333 35555554442
Q ss_pred CCCCceEEEE-EeecCCCCceeeeEEEEEcCCCeeEEEeccceecc
Q 025783 197 PSGKKRDIEF-KMIEGDFQLFEGKWSIEQVTYSCLQIIQNNIFVKL 241 (248)
Q Consensus 197 P~g~~rrI~f-~lVeGDFK~feG~W~fep~~~Gt~~vl~~~~~~~~ 241 (248)
+ ..++|.| +..+|+|+.+.|.|+|++.++||++.+.-++-.+.
T Consensus 71 ~--~~~~i~~~~~~~~p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~ 114 (146)
T cd08860 71 P--VNRTVRARRVETGPFAYMNIRWEYTEVPEGTRMRWVQDFEMKP 114 (146)
T ss_pred C--CCcEEEEEEecCCCcceeeeeEEEEECCCCEEEEEEEEEEECC
Confidence 1 1357888 45578999999999999999999999998877653
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.55 E-value=1.3e-13 Score=109.63 Aligned_cols=109 Identities=17% Similarity=0.363 Sum_probs=81.2
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCE--EEEEEEeecceeeceEEEEeEEEEeeccccccCCC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF--VRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~--vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~ 198 (248)
++.++.|++|+++||++|+|+++||+|+|+ ..++++...++. ++...++..+. ...+...... .|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~---------~~- 67 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGS--VHTWTSRRVL---------DP- 67 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCc--EEEEEEEEEE---------cC-
Confidence 367899999999999999999999999999 888888875543 33234543333 2333222211 12
Q ss_pred CCceEEEEEeec--CCCCceeeeEEEEEcC-CCeeEEEeccceecccC
Q 025783 199 GKKRDIEFKMIE--GDFQLFEGKWSIEQVT-YSCLQIIQNNIFVKLCI 243 (248)
Q Consensus 199 g~~rrI~f~lVe--GDFK~feG~W~fep~~-~Gt~~vl~~~~~~~~~~ 243 (248)
++++|.|.+++ |+|+.++|.|.|++.+ ++|++.+.-++..+.++
T Consensus 68 -~~~~i~~~~~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~ 114 (142)
T cd08861 68 -EGRRIVFRQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDS 114 (142)
T ss_pred -CCCEEEEEEeeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCC
Confidence 13789999998 8899999999999998 67999888888777543
No 8
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=3e-13 Score=106.12 Aligned_cols=107 Identities=14% Similarity=0.282 Sum_probs=78.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecC-CEEEE--EEEeecceeeceEEEEeEEEEeeccccccC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND-NFVRL--YQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g-~~vrv--~QVG~~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
+++.++.|+||+++||++|+|+++||+|+|+|.++++++..+ +.... ..+|...+ ...+. .+++. .
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~-----~ 71 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGI--KDTYA----LEYTW-----D 71 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeE--EEEEE----EEEEE-----c
Confidence 688999999999999999999999999999999999987644 32211 22332222 12222 22222 1
Q ss_pred CCCCceEEEEEeecCC-CCceeeeEEEEEcCCCeeEEEeccceec
Q 025783 197 PSGKKRDIEFKMIEGD-FQLFEGKWSIEQVTYSCLQIIQNNIFVK 240 (248)
Q Consensus 197 P~g~~rrI~f~lVeGD-FK~feG~W~fep~~~Gt~~vl~~~~~~~ 240 (248)
+ +++|.|+.++|. +..++|.|+|++.++||++.+.-+.-..
T Consensus 72 ~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~t~vt~~~~~~~~ 113 (140)
T cd07819 72 G---AGSVSWTLVEGEGNRSQEGSYTLTPKGDGTRVTFDLTVELT 113 (140)
T ss_pred C---CCcEEEEEecccceeEEEEEEEEEECCCCEEEEEEEEEEec
Confidence 1 257999999987 8999999999999999998877655443
No 9
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.29 E-value=2.5e-11 Score=97.66 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=83.2
Q ss_pred EEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEE----EE-EEEeecceeeceEEEEeEEEEeeccccccC
Q 025783 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFV----RL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 122 ~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~v----rv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
+.++.|++|+++||++++|.+++++++|.+.+++++.+.++.+ ++ .++... +..+ +.+.++++ ..
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~----~~~~--~w~~~it~----~~ 71 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHF----GIPQ--RWTTEITE----VE 71 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEec----CCce--EEEEEEEE----Ec
Confidence 5788999999999999999999999999999999997654332 11 222221 2111 22233343 22
Q ss_pred CCCCceEEEEEeecCCCCceeeeEEEEEcCCCeeEEEeccceecccCc
Q 025783 197 PSGKKRDIEFKMIEGDFQLFEGKWSIEQVTYSCLQIIQNNIFVKLCIF 244 (248)
Q Consensus 197 P~g~~rrI~f~lVeGDFK~feG~W~fep~~~Gt~~vl~~~~~~~~~~~ 244 (248)
| ++++.+++++|+|+.+++.|.|++.++||++....++-+|.+.+
T Consensus 72 p---~~~f~~~~~~G~~~~w~h~~~f~~~~~gT~vt~~v~~~~p~g~l 116 (137)
T cd07820 72 P---PRRFVDEQVSGPFRSWRHTHRFEAIGGGTLMTDRVEYRLPLGPL 116 (137)
T ss_pred C---CCeEEEEeccCCchhCEEEEEEEECCCceEEEEEEEEeCCchhH
Confidence 3 37899999999999999999999999999999999998876543
No 10
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.29 E-value=2.7e-11 Score=98.37 Aligned_cols=110 Identities=19% Similarity=0.278 Sum_probs=76.9
Q ss_pred EEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecC-CE--EEEEEEeecceeeceEEEEeEEEEeecccccc
Q 025783 119 RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND-NF--VRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (248)
Q Consensus 119 r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g-~~--vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~ 195 (248)
|+..-+..|++|+++||++|+|+++||+|+|+|.+++++++.+ .. .+ .+....+. .++.+..+. .+++ .
T Consensus 1 ~~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~-~~~~~~~~-~~~~~~~~~--~v~~----~ 72 (146)
T cd07824 1 YRFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGAR-RRYTWRGL-LPYRLRFEL--RVTR----I 72 (146)
T ss_pred CcceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceE-EEEEEEec-CCcEEEEEE--EEEe----e
Confidence 3566788999999999999999999999999999999998422 11 22 11111111 122222222 2233 1
Q ss_pred CCCCCceEEEEEeecCCCCceeeeEEEEEcCCCeeEEEeccceecc
Q 025783 196 FPSGKKRDIEFKMIEGDFQLFEGKWSIEQVTYSCLQIIQNNIFVKL 241 (248)
Q Consensus 196 ~P~g~~rrI~f~lVeGDFK~feG~W~fep~~~Gt~~vl~~~~~~~~ 241 (248)
.| ++++.+. .+|+|+. ++.|+|++.++||++.+.-+.-++.
T Consensus 73 ~p---~~~~~~~-~~g~~~~-~~~~~~~~~~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 73 EP---LSLLEVR-ASGDLEG-VGRWTLAPDGSGTVVRYDWEVRTTK 113 (146)
T ss_pred cC---CcEEEEE-EEEeeeE-EEEEEEEEcCCCEEEEEEEEEEcCH
Confidence 23 4789997 5899886 8999999999999998887776643
No 11
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=4.9e-11 Score=92.57 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=76.5
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCC----EEEEEEEeecceeeceEEEEeEEEEeeccccccC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN----FVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~----~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
|+.++.|++|+++||++|+|+++|++|.|++..++++...+. ..+ .+++.. +..++... .+++ ..
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~-~~~~~~----g~~~~~~~--~v~~----~~ 69 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYH-QVRKFL----GRRIELTY--EITE----YE 69 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEE-EEEEec----CceEEEEE--EEEE----ec
Confidence 467899999999999999999999999999999998864322 222 222211 23333222 2233 12
Q ss_pred CCCCceEEEEEeecCCCCceeeeEEEEEcCCCeeEEEeccceec
Q 025783 197 PSGKKRDIEFKMIEGDFQLFEGKWSIEQVTYSCLQIIQNNIFVK 240 (248)
Q Consensus 197 P~g~~rrI~f~lVeGDFK~feG~W~fep~~~Gt~~vl~~~~~~~ 240 (248)
| ++.|.+....|+++ +.+.|+|++.++||+..++.++.++
T Consensus 70 p---~~~~~~~~~~~~~~-~~~~~~~~~~~~~t~v~~~~~~~~~ 109 (140)
T cd08865 70 P---GRRVVFRGSSGPFP-YEDTYTFEPVGGGTRVRYTAELEPG 109 (140)
T ss_pred C---CcEEEEEecCCCcc-eEEEEEEEEcCCceEEEEEEEEccc
Confidence 3 47899999888886 7999999999999999888776663
No 12
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=4.2e-11 Score=94.04 Aligned_cols=104 Identities=13% Similarity=0.245 Sum_probs=76.2
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCCCC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~ 200 (248)
|+.++.|++|+++||++++|+++||+|.|++.+++++.+.+....+. .. .+. ...+..++ ++ ..|
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~-~g~--~~~~~~~v----~~----~~~--- 66 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAK-GP-AGL--SVEWDAEI----TE----QVP--- 66 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEe-cC-CCC--cEEEEEEE----ec----cCC---
Confidence 67899999999999999999999999999999999886533333221 11 121 23333332 33 223
Q ss_pred ceEEEEEeecCCCCceeeeEEEEEcCC-CeeEEEeccceec
Q 025783 201 KRDIEFKMIEGDFQLFEGKWSIEQVTY-SCLQIIQNNIFVK 240 (248)
Q Consensus 201 ~rrI~f~lVeGDFK~feG~W~fep~~~-Gt~~vl~~~~~~~ 240 (248)
+++|.|++..|+| .++|.|+|++.++ +|++.+...+-.+
T Consensus 67 ~~~i~~~~~~~~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~ 106 (139)
T cd07817 67 NERIAWRSVEGAD-PNAGSVRFRPAPGRGTRVTLTIEYEPP 106 (139)
T ss_pred CCEEEEEECCCCC-CcceEEEEEECCCCCeEEEEEEEEECC
Confidence 3679999999999 8999999999886 7888777665544
No 13
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.22 E-value=1e-10 Score=94.05 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=78.7
Q ss_pred EEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEec------CCEEEEEEEeecceeeceEEEEeEEEEeeccc
Q 025783 119 RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN------DNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKD 192 (248)
Q Consensus 119 r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~------g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d 192 (248)
.+++.++.|++|+++||++++|+++||+|+|++..+..+++. +...+....+.... ....+++++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~-------~~~~~~v~~-- 72 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV-------GEGEMEITE-- 72 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc-------cceEEEEEe--
Confidence 478999999999999999999999999999999887665431 11111111111100 011233344
Q ss_pred cccCCCCCceEEEEEeec-CCCC-ceeeeEEEEEcCCCeeEEEeccceeccc
Q 025783 193 LEIFPSGKKRDIEFKMIE-GDFQ-LFEGKWSIEQVTYSCLQIIQNNIFVKLC 242 (248)
Q Consensus 193 ~e~~P~g~~rrI~f~lVe-GDFK-~feG~W~fep~~~Gt~~vl~~~~~~~~~ 242 (248)
..| +++|.|++.. |+++ ...+.|+|++.++||++.+..++.++-+
T Consensus 73 --~~p---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 73 --SVP---NERIEYELRFIKPFEATNDVEFTLEPVGGGTKVTWGMSGELPFP 119 (150)
T ss_pred --cCC---CcEEEEEEEecCCccccceEEEEEEEcCCceEEEEEEEecCCch
Confidence 234 4789999985 7786 9999999999999999999888877643
No 14
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.21 E-value=3.2e-10 Score=89.30 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=75.5
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeeceEEEEeEEEEeeccccccCCC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~ 198 (248)
.++.++.|++|+++||++|+|+++|++|+|+|..+++++. +...+ .+++...+ +..++.+. .+++ ..|
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~--~~~~----~~~- 70 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP--NEYEATVKLKVGPV--KGTFKGKV--ELSD----LDP- 70 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC--CeEEEEEEEEEccE--EEEEEEEE--EEEe----cCC-
Confidence 4788999999999999999999999999999999988763 33322 23332222 23444333 3343 122
Q ss_pred CCceEEEEEeec-C--CCCceeeeEEEEEcCCCeeEEEecccee
Q 025783 199 GKKRDIEFKMIE-G--DFQLFEGKWSIEQVTYSCLQIIQNNIFV 239 (248)
Q Consensus 199 g~~rrI~f~lVe-G--DFK~feG~W~fep~~~Gt~~vl~~~~~~ 239 (248)
++++.+.... | .+..+.+.|.|++.++||++...-+.-.
T Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gT~v~~~~~~~~ 112 (144)
T cd05018 71 --PESYTITGEGKGGAGFVKGTARVTLEPDGGGTRLTYTADAQV 112 (144)
T ss_pred --CcEEEEEEEEcCCCceEEEEEEEEEEecCCcEEEEEEEEEEE
Confidence 3577777653 3 3889999999999988898877766553
No 15
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.19 E-value=5.4e-10 Score=86.95 Aligned_cols=108 Identities=16% Similarity=0.259 Sum_probs=79.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecC--CEEEEEEEeecceeeceEEEEeEEEEeeccccccCC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND--NFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFP 197 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g--~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P 197 (248)
+|..++.|++|+++||++|+|+++|++|+|++..++++...+ +..+..+... +..+. ..+.+ ..|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~-----g~~~~----~~i~~----~~~ 68 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKD-----GGTVR----ERLLA----LDD 68 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCC-----CCEEE----EEehh----cCc
Confidence 578899999999999999999999999999999999987653 2222222111 11111 12222 122
Q ss_pred CCCceEEEEEeecC--CCCceeeeEEEEEcCC-CeeEEEeccceeccc
Q 025783 198 SGKKRDIEFKMIEG--DFQLFEGKWSIEQVTY-SCLQIIQNNIFVKLC 242 (248)
Q Consensus 198 ~g~~rrI~f~lVeG--DFK~feG~W~fep~~~-Gt~~vl~~~~~~~~~ 242 (248)
. +++|.|+++.| +++.+.|.|+|++.++ ||.+.++-.+..+.+
T Consensus 69 ~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 114 (140)
T cd07821 69 A--ERRYSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG 114 (140)
T ss_pred c--CCEEEEEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecCCC
Confidence 1 27899999986 4788999999999987 899988888777654
No 16
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.13 E-value=4.4e-09 Score=81.88 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=76.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEE-EEEEEeecceeeceEEEEeEEEEeeccccccCCC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFV-RLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~v-rv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~ 198 (248)
+++.++.|++|+++||++|+|+++++++.|.+..+++++.++... ........ ..+. .++.+. .|
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~----~~i~~~----~~- 68 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVAGR-----GTVR----EEITEY----DP- 68 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEECSC-----SEEE----EEEEEE----ET-
T ss_pred EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEeccc-----ccee----EEEEEe----cC-
Confidence 688999999999999999999999999999999999988554433 22222210 2222 222331 12
Q ss_pred CCceEEEEEeecCCCCceeeeEEEEEcCCCeeEEEecccee
Q 025783 199 GKKRDIEFKMIEGDFQLFEGKWSIEQVTYSCLQIIQNNIFV 239 (248)
Q Consensus 199 g~~rrI~f~lVeGDFK~feG~W~fep~~~Gt~~vl~~~~~~ 239 (248)
+++.|.|+.+.+++..+.|.|+|++.++||.+..+-++-.
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 69 -EPRRITWRFVPSGFTNGTGRWRFEPVGDGTRVTWTVEFEP 108 (139)
T ss_dssp -TTTEEEEEEESSSSCEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred -CCcEEEEEEEecceeEEEEEEEEEEcCCCEEEEEEEEEEE
Confidence 1478999998667888899999999999998877666553
No 17
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.05 E-value=5e-09 Score=78.28 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=77.1
Q ss_pred EEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEE-EEeecceeeceEEEEeEEEEeeccccccCCCCC
Q 025783 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLY-QIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (248)
Q Consensus 122 ~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~-QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~ 200 (248)
..++.|++|+++||++|+|+++|++|+|++..++++...+...... ...... +..+..... +.+ ..|
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--v~~----~~~--- 69 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKG---GRRLTLTSE--VTE----VDP--- 69 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecC---CccccceEE--EEE----ecC---
Confidence 5688999999999999999999999999999999887644332211 111000 011111211 222 122
Q ss_pred ceEEEEEeecCCCC-ceeeeEEEEEcCC-CeeEEEeccceecccC
Q 025783 201 KRDIEFKMIEGDFQ-LFEGKWSIEQVTY-SCLQIIQNNIFVKLCI 243 (248)
Q Consensus 201 ~rrI~f~lVeGDFK-~feG~W~fep~~~-Gt~~vl~~~~~~~~~~ 243 (248)
+..+.|....+++. .+.+.|+|++.++ +|++...-....+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 70 PRPGRFRVTGGGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred CCceEEEEecCCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 25799999998865 9999999999998 9998888777666544
No 18
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.02 E-value=2.8e-08 Score=84.18 Aligned_cols=120 Identities=15% Similarity=0.323 Sum_probs=80.4
Q ss_pred eecCCceEEEEEEcCCCc-EEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCE-EEEEEEeecceee-c
Q 025783 101 SLHGDGVCIEIKKLGRNS-RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF-VRLYQIGQQNLAF-G 177 (248)
Q Consensus 101 ~l~~~~v~V~v~~l~~~~-r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~-vrv~QVG~~~i~f-g 177 (248)
....+++.|..+..+++. ..+.++..|++++++||+++.|+|+||+|.|+|.+++|+++.++. ...++.-.....+ .
T Consensus 22 ~~~~~~v~v~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~ 101 (195)
T cd08876 22 VKDKDGIKVYTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKD 101 (195)
T ss_pred EecCCCeEEEEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCC
Confidence 335678899998887776 799999999999999999999999999999999999999997753 3233322111100 1
Q ss_pred eEEEEeEEEEeeccccccCCCCCceEEEEEeecC----C-------CCceeeeEEEEEcCCCe
Q 025783 178 IKFNAKGVLDCYEKDLEIFPSGKKRDIEFKMIEG----D-------FQLFEGKWSIEQVTYSC 229 (248)
Q Consensus 178 ~~FtarvvLdvtE~d~e~~P~g~~rrI~f~lVeG----D-------FK~feG~W~fep~~~Gt 229 (248)
-.|....... .+ .. +..+.+...++ | ++.+.|.|.|++.++++
T Consensus 102 Rdfv~~~~~~-~~-----~~---~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~ 155 (195)
T cd08876 102 RDMVLRSTTE-QD-----AD---DGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGK 155 (195)
T ss_pred ceEEEEEEEE-Ec-----CC---CCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCe
Confidence 1222221111 10 11 12344444333 2 78899999999998764
No 19
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.02 E-value=7.4e-09 Score=81.05 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=77.0
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCCCC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~ 200 (248)
|..++.|++|+++||++|+|++++++|.|.+..+.+....|+..+....+..+ ..+. ...++++ ..|
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g----~~~~--~~~~i~~----~~~--- 68 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDG----EEGW--VSGEVLE----VEP--- 68 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCC----CEEe--ccEEEEE----EcC---
Confidence 67889999999999999999999999999855555555555554433222111 1222 2233333 234
Q ss_pred ceEEEEEeecCC---CCceeeeEEEEEcCCCeeEEEeccceec
Q 025783 201 KRDIEFKMIEGD---FQLFEGKWSIEQVTYSCLQIIQNNIFVK 240 (248)
Q Consensus 201 ~rrI~f~lVeGD---FK~feG~W~fep~~~Gt~~vl~~~~~~~ 240 (248)
+++|.|+...++ +....+.|+|++.++||++.+.-+.+.+
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~ 111 (139)
T cd07814 69 PRRLVFTWAFSDETPGPETTVTVTLEETGGGTRLTLTHSGFPE 111 (139)
T ss_pred CCeEEEEecccCCCCCCceEEEEEEEECCCCEEEEEEEEccCh
Confidence 478999999874 6788999999999999999988777665
No 20
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=98.97 E-value=1.3e-08 Score=79.81 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=70.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEec-C--CEEEEEEEeecceeeceEEEEeEEEEeeccccccC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN-D--NFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~-g--~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
+++.++.|+||+++||++++|+++|++|.|++..++++... + ...++ ..+ .. ..+. ..+.+ ..
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~-~~~-~~----~~~~----~~i~~----~~ 67 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKM-KPP-GL----VRST----FTVTE----LR 67 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEE-ecC-CC----CceE----EEEEE----ec
Confidence 57889999999999999999999999999999999998765 2 22222 111 11 2222 22333 22
Q ss_pred CCCCceEEEEEeecCCCCceeeeEEEEEcC-CCeeEEEeccce
Q 025783 197 PSGKKRDIEFKMIEGDFQLFEGKWSIEQVT-YSCLQIIQNNIF 238 (248)
Q Consensus 197 P~g~~rrI~f~lVeGDFK~feG~W~fep~~-~Gt~~vl~~~~~ 238 (248)
| +++|.++... ++....+.|+|++.+ +||+..++-++-
T Consensus 68 p---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~l~~~~~~~ 106 (138)
T cd08862 68 P---GHSFTWTGPA-PGISAVHRHEFEAKPDGGVRVTTSESLS 106 (138)
T ss_pred C---CCEEEEEecC-CCEEEEEEEEEEEcCCCcEEEEEEEEee
Confidence 3 3678888654 455667899999988 678877665544
No 21
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=98.92 E-value=1.4e-09 Score=96.72 Aligned_cols=106 Identities=13% Similarity=0.184 Sum_probs=83.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEec-CCEEEE-EEEeecceeeceEEEEeEEEEeeccccccCC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN-DNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFP 197 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~-g~~vrv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P 197 (248)
..+.+..|.+++++||+++.|++.|.+|+|||++|.|.++. ++...+ +.||++.+ -..|+++|+..- |
T Consensus 69 ~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l--~E~y~S~Vt~~~--------p 138 (227)
T KOG3177|consen 69 AYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPL--DERYTSNVTCVK--------P 138 (227)
T ss_pred HHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCccc--chhheeeeEEec--------c
Confidence 45567799999999999999999999999999999999998 554444 67999887 489999988841 2
Q ss_pred CCCceEEEEEeecCC-CCceeeeEEEEEcC--CCe-eEEEecccee
Q 025783 198 SGKKRDIEFKMIEGD-FQLFEGKWSIEQVT--YSC-LQIIQNNIFV 239 (248)
Q Consensus 198 ~g~~rrI~f~lVeGD-FK~feG~W~fep~~--~Gt-~~vl~~~~~~ 239 (248)
..+.-...+|- |+++...|+|.|.. .++ .+.+..++..
T Consensus 139 ----~l~kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF 180 (227)
T KOG3177|consen 139 ----HLTKTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEF 180 (227)
T ss_pred ----cceEEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEe
Confidence 34555666776 99999999999987 444 4445544443
No 22
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.89 E-value=4.2e-08 Score=76.35 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=72.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEE-EecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVV-EKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPS 198 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVL-er~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~ 198 (248)
+|+.++.|++|+++||++++|.++++++.|++.+++.. ...|.+......+..+ ..+ ....++++ ..|
T Consensus 1 ~v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~----~~~--~~~~~v~~----~~p- 69 (141)
T cd07822 1 TISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGG----PPR--SFKPRVTE----VEP- 69 (141)
T ss_pred CeEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCC----CcE--EEEEEEEE----EcC-
Confidence 37889999999999999999999999999999888775 3455555432111111 111 12233344 233
Q ss_pred CCceEEEEEeecCCCC--ceeeeEEEEEc-CCCeeEEEec
Q 025783 199 GKKRDIEFKMIEGDFQ--LFEGKWSIEQV-TYSCLQIIQN 235 (248)
Q Consensus 199 g~~rrI~f~lVeGDFK--~feG~W~fep~-~~Gt~~vl~~ 235 (248)
+++|.|+...|+.. ...+.|+|++. +++|+..+..
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~ 107 (141)
T cd07822 70 --PRRLAWRGGLPFPGLLDGEHSFELEPLGDGGTRFVHRE 107 (141)
T ss_pred --CCEeEEEecCCCCcEeeEEEEEEEEEcCCCcEEEEEee
Confidence 47999999888743 57889999998 6788877654
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.75 E-value=1.4e-07 Score=76.65 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=72.1
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeeceEEEEeEEEEeeccccccC-CC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIF-PS 198 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~-P~ 198 (248)
|+.++.|++||++||++|+|+++|+.++|++...+++. ++.... .+++...+ +..| +..+++++ .. |
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~~--~~~~--~~~~~~~~----~~~~- 69 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGPI--SASF--KGTARLLE----DDEA- 69 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEccE--EEEE--EEEEEEEe----ccCC-
Confidence 35688999999999999999999999999998887653 233322 34443333 2333 33344454 12 2
Q ss_pred CCceEEEEEeec--CC---CCceeeeEEEEEcCCCeeEEEeccceeccc
Q 025783 199 GKKRDIEFKMIE--GD---FQLFEGKWSIEQVTYSCLQIIQNNIFVKLC 242 (248)
Q Consensus 199 g~~rrI~f~lVe--GD---FK~feG~W~fep~~~Gt~~vl~~~~~~~~~ 242 (248)
++++.+.... +. .-.....|++.+.++||++.+.-+..+.-+
T Consensus 70 --~~~~~~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 70 --ARRAVLEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGK 116 (146)
T ss_pred --CcEEEEEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeE
Confidence 3677776443 11 114677899999888999988876655443
No 24
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.60 E-value=1e-06 Score=70.12 Aligned_cols=103 Identities=12% Similarity=0.181 Sum_probs=65.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEE-----ecCCEEEEEEEeecceeeceEEEEeEEEEeeccccc
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVE-----KNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLE 194 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLe-----r~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e 194 (248)
+|+.++.|+||+++||++++|+++|+++.|+.....+.. +.|+..+. ++...+. .+.+..+ +++
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~g~--~~~~~~~----v~~---- 69 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRM-AMRLDGG--PYRITNH----VVA---- 69 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEE-EEEcCCC--ceEEEEE----EEE----
Confidence 478899999999999999999999999998644322221 22333332 2221121 2334333 233
Q ss_pred cCCCCCceEEEEEee-cC-CCCceeeeEEEEEcC-CCeeEEEecc
Q 025783 195 IFPSGKKRDIEFKMI-EG-DFQLFEGKWSIEQVT-YSCLQIIQNN 236 (248)
Q Consensus 195 ~~P~g~~rrI~f~lV-eG-DFK~feG~W~fep~~-~Gt~~vl~~~ 236 (248)
..| +++|.|+.. .| ........|.|++.+ ++|++.++-.
T Consensus 70 ~~p---~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~ 111 (144)
T cd07825 70 FEE---NRLIAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYD 111 (144)
T ss_pred ECC---CCEEEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEe
Confidence 234 378999865 22 234567789999988 5688877754
No 25
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.50 E-value=4.5e-06 Score=69.12 Aligned_cols=108 Identities=12% Similarity=0.263 Sum_probs=74.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhh-h-ccccCCcceeEEEEecC--CEEEEEEEeecceeeceEEEEeEEEEeecccccc
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEK-L-ADFVPNLAVSQVVEKND--NFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEr-y-PeFIP~~~~SrVLer~g--~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~ 195 (248)
.+..++.|++|+++||+++.|+++ + +.+.|.++.+++++.++ +.+|....+... . ... +.-++.+.
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~-~--~~~---~kE~l~~~---- 71 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG-K--VKY---VKERIDAV---- 71 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCC-c--ceE---EEEEEEEE----
Confidence 578899999999999999999994 5 56889999999987653 345544333221 0 000 11222221
Q ss_pred CCCCCceEEEEEeecCC-----CCceeeeEEEEEcC-CCeeEEEecccee
Q 025783 196 FPSGKKRDIEFKMIEGD-----FQLFEGKWSIEQVT-YSCLQIIQNNIFV 239 (248)
Q Consensus 196 ~P~g~~rrI~f~lVeGD-----FK~feG~W~fep~~-~Gt~~vl~~~~~~ 239 (248)
.+ .+++|.|++++|+ ++.|.+..+|.+.+ ++|.+..+-.+.-
T Consensus 72 D~--~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~ 119 (148)
T cd07816 72 DE--ENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEK 119 (148)
T ss_pred cc--cccEEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 12 3589999999996 56789999999985 4677777766653
No 26
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.09 E-value=1.2e-05 Score=70.85 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=81.0
Q ss_pred cEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCC
Q 025783 118 SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFP 197 (248)
Q Consensus 118 ~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P 197 (248)
-..|+.++.|++|+++||++-.|.|++|.||.++.+++|++.+..+..+. ... |..|+=.. ++++ ..|
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkrSrW~~~----ap~--g~~v~Wea--~it~----d~~ 136 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKRSRWKAN----APL--GLEVEWEA--EITK----DIP 136 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCccceeEc----CCC--CceEEEee--hhhc----cCC
Confidence 35788999999999999999999999999999999999997765443332 111 23332221 1233 233
Q ss_pred CCCceEEEEEeecCCCCceeeeEEEEEcCCC-eeEEEeccceecc
Q 025783 198 SGKKRDIEFKMIEGDFQLFEGKWSIEQVTYS-CLQIIQNNIFVKL 241 (248)
Q Consensus 198 ~g~~rrI~f~lVeGDFK~feG~W~fep~~~G-t~~vl~~~~~~~~ 241 (248)
.++|.++.++|.==.-+|.-+|.+.++. |.++++..|=+|-
T Consensus 137 ---~e~I~W~Sl~Ga~v~NsG~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 137 ---GERIQWESLPGARVENSGAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred ---CcEEeeecCCCCcCCCCccEEeeeCCCCceEEEEEEEecCCc
Confidence 4799999999975556999999998865 6999888876653
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.08 E-value=5.9e-05 Score=62.46 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=70.8
Q ss_pred CCCcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccc
Q 025783 115 GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLE 194 (248)
Q Consensus 115 ~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e 194 (248)
.+|.+.|..++.|++|+++||++++|.++++++.|.. ..-.+.|+..+. +.+... +..+.. .+.+
T Consensus 7 ~~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~~~~~G~~~~~-~~~~~~---~~~~~~----~v~e---- 71 (157)
T cd08899 7 LDGGATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TGDLRVGGRVEF-VMDDEE---GPNATG----TILA---- 71 (157)
T ss_pred cCCCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CCCcccCceEEE-EecCCC---CCccce----EEEE----
Confidence 3455789999999999999999999999999999933 122223444432 222110 111211 2222
Q ss_pred cCCCCCceEEEEEeecCCCCceeeeEEEEEcCCCeeEEEecccee
Q 025783 195 IFPSGKKRDIEFKMIEGDFQLFEGKWSIEQVTYSCLQIIQNNIFV 239 (248)
Q Consensus 195 ~~P~g~~rrI~f~lVeGDFK~feG~W~fep~~~Gt~~vl~~~~~~ 239 (248)
..| +++|.|+...++ ......|.|++.++||...+.-..+.
T Consensus 72 ~~p---~~~l~~~~~~~~-~~~~~~~~l~~~~~gT~v~~~~~~~~ 112 (157)
T cd08899 72 CEP---PRLLAFTWGEGG-GESEVRFELAPEGDGTRLTLTHRLLD 112 (157)
T ss_pred EcC---CcEEEEEecCCC-CCceEEEEEEEcCCCEEEEEEEeccC
Confidence 123 378999988766 45578899999999999888776653
No 28
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.04 E-value=9.2e-05 Score=58.62 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=64.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCCC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSG 199 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g 199 (248)
+|+.++.|+||+++||++++|.++|+++.|... .......+.......-|... ..+. ..+.+ ..|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g~~~~~~~~~----~~~~----~~i~~----~~p-- 66 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATGEITYPGYEH----GVFP----VTVVE----VDP-- 66 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCcceeEEecCCCCc----cceE----EEEEE----eCC--
Confidence 588999999999999999999999999999753 11111111111111111100 1111 22222 223
Q ss_pred CceEEEEEeecCC---------CCceeeeEEEEEcCCCeeEEEeccceec
Q 025783 200 KKRDIEFKMIEGD---------FQLFEGKWSIEQVTYSCLQIIQNNIFVK 240 (248)
Q Consensus 200 ~~rrI~f~lVeGD---------FK~feG~W~fep~~~Gt~~vl~~~~~~~ 240 (248)
+++|.|+...+. -....-.|.|++.++||.+.++-.-|.+
T Consensus 67 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~ 115 (145)
T cd08898 67 -PRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDA 115 (145)
T ss_pred -CcEEEEEecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCC
Confidence 478888875432 1224579999999999999998665543
No 29
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=97.93 E-value=0.00018 Score=56.14 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=66.3
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCCCC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~ 200 (248)
+..++.|++|+++||+++||.++|++|.+... ...--+.|++.... .+... ...+.. .+.+ ..|
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~G~~~~~~-~~~~~---~~~~~~----~v~~----~~~--- 65 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-VESDWKVGSAFEYR-RGDDG---TVDVEG----EVLE----SDP--- 65 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecccc-cccCCcCCCeEEEE-eCCCc---ccccce----EEEE----ecC---
Confidence 56789999999999999999999999988732 11112234444332 22100 011111 1222 123
Q ss_pred ceEEEEEeecCC------CCceeeeEEEEEcCCCeeEEEeccceec
Q 025783 201 KRDIEFKMIEGD------FQLFEGKWSIEQVTYSCLQIIQNNIFVK 240 (248)
Q Consensus 201 ~rrI~f~lVeGD------FK~feG~W~fep~~~Gt~~vl~~~~~~~ 240 (248)
+++|.|+...++ .....-.|.|++.++||+..+.-.-+.+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~ 111 (136)
T cd08893 66 PRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPP 111 (136)
T ss_pred CCeEEEEEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCC
Confidence 378888876432 2367889999999999999888776543
No 30
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.92 E-value=0.00025 Score=56.73 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=65.6
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCC-----cceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeecccccc
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN-----LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~-----~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~ 195 (248)
+..++.++||+++||+++||=|.+.+|++. +...+.--+.|+..+....+..+- .+..+... .+++
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~-~~~~~~g~-~~ei------- 72 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGS-MGFDFEGT-YTEV------- 72 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCC-cccccceE-EEEE-------
Confidence 567889999999999999999999999654 233333345666655422211110 01222222 2222
Q ss_pred CCCCCceEEEEEeecCCCCceeeeEEEEEcCCCeeEEEeccc
Q 025783 196 FPSGKKRDIEFKMIEGDFQLFEGKWSIEQVTYSCLQIIQNNI 237 (248)
Q Consensus 196 ~P~g~~rrI~f~lVeGDFK~feG~W~fep~~~Gt~~vl~~~~ 237 (248)
.| +++|.|+..+| ..-.|.|++.++||...|..+.
T Consensus 73 ~p---~~~l~~~~~~~----~~v~~~l~~~~~gT~l~l~~~~ 107 (133)
T cd08897 73 EP---HKLIEYTMEDG----REVEVEFTEEGDGTKVVETFDA 107 (133)
T ss_pred CC---CCEEEEEcCCC----CEEEEEEEECCCCEEEEEEECC
Confidence 23 48999997543 3579999999999999887443
No 31
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.89 E-value=0.00043 Score=62.74 Aligned_cols=138 Identities=10% Similarity=0.069 Sum_probs=86.0
Q ss_pred eeeecCCceEEEEEEcCCCcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeec
Q 025783 99 TQSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFG 177 (248)
Q Consensus 99 ~~~l~~~~v~V~v~~l~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg 177 (248)
......++|.|..+. +.+...+.+...++++++++|++|.|.+.+++|.+.+.++++|++-++...+ +++....
T Consensus 58 ~l~~~k~gIkVytr~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~P---- 132 (235)
T cd08873 58 TVASSTTSVTLYTLE-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSL---- 132 (235)
T ss_pred EEEEcCCCEEEEEec-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCC----
Confidence 466778899999987 4444568888899999999999999999999999999999999986644332 4432221
Q ss_pred eEEEEe--EEEEeeccccccCCCCCceEEEEEeecC-------C---CCceeeeEEEEEcCCCeeEEEeccceecccCcC
Q 025783 178 IKFNAK--GVLDCYEKDLEIFPSGKKRDIEFKMIEG-------D---FQLFEGKWSIEQVTYSCLQIIQNNIFVKLCIFP 245 (248)
Q Consensus 178 ~~Ftar--vvLdvtE~d~e~~P~g~~rrI~f~lVeG-------D---FK~feG~W~fep~~~Gt~~vl~~~~~~~~~~~~ 245 (248)
|...-| +.+....+ ..+++..-.|.++.+.= . .+.+.|.|.|+|.++|++.+ +---.+.++|.|
T Consensus 133 wPvk~RDfV~~~s~~~---~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~V-tY~~~~dPg~~~ 208 (235)
T cd08873 133 TSEKPNDFVLLVSRRK---PATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEV-SYYNETNPKLLS 208 (235)
T ss_pred CCCCCceEEEEEEEEe---ccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEE-EEEEEcCCCccc
Confidence 111111 11111110 01111112455555551 1 35688999999998664332 222344455544
No 32
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.80 E-value=0.001 Score=53.59 Aligned_cols=102 Identities=21% Similarity=0.150 Sum_probs=65.4
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccC-C---cceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVP-N---LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP-~---~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
+..+..|++|+++||+++||=+.+++|++ . +...++--+.|+..+....+..+ ..+....+ +.+ ..
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g----~~~~~~g~--v~e----~~ 71 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDG----TDYPNRIV--FLE----IE 71 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCC----CEecceEE--EEE----Ec
Confidence 56678999999999999999999999974 2 22334334456655443222222 22222211 222 23
Q ss_pred CCCCceEEEEEeecCCCCceeeeEEEEEcCCCeeEEEecc
Q 025783 197 PSGKKRDIEFKMIEGDFQLFEGKWSIEQVTYSCLQIIQNN 236 (248)
Q Consensus 197 P~g~~rrI~f~lVeGDFK~feG~W~fep~~~Gt~~vl~~~ 236 (248)
| +++|.|....++- ...-.|.|++.++||+..++-.
T Consensus 72 p---~~~l~~t~~~~~~-~~~v~~~~~~~~~gT~ltl~~~ 107 (139)
T cd08894 72 P---PERIVYDHGSGPP-RFRLTVTFEEQGGKTRLTWRQV 107 (139)
T ss_pred C---CCEEEEEeccCCC-cEEEEEEEEECCCCEEEEEEEE
Confidence 4 4899998865532 2456799999999999888754
No 33
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.76 E-value=0.0013 Score=53.30 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=65.5
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccC----CcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVP----NLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP----~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
+..++.|+||+++||+++||=+.+.+|.+ .+..+++--+.|+..+....+..+- .+.+..+ ++++ .
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~--~~~~~g~-v~~i-------~ 71 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGE--EFPNPGC-FLEV-------V 71 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCC--EecceEE-EEEE-------e
Confidence 45678999999999999999999999976 2444555566777765433332221 1222222 2322 2
Q ss_pred CCCCceEEEEEeec--C-CC---CceeeeEEEEEcCCCeeEEEec
Q 025783 197 PSGKKRDIEFKMIE--G-DF---QLFEGKWSIEQVTYSCLQIIQN 235 (248)
Q Consensus 197 P~g~~rrI~f~lVe--G-DF---K~feG~W~fep~~~Gt~~vl~~ 235 (248)
| +++|.|+..- | +- ....-.|.|++.++||+..|+-
T Consensus 72 p---~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~~gT~Ltl~~ 113 (146)
T cd08896 72 P---GERLVFTDALTPGWRPAEKPFMTAIITFEDEGGGTRYTARA 113 (146)
T ss_pred C---CCEEEEEEeecCCcCCCCCCcEEEEEEEEecCCcEEEEEEE
Confidence 3 4788887532 1 11 1135689999999999988753
No 34
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=97.75 E-value=0.00058 Score=58.10 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=69.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE---EEEeecceeeceEEEEeEEEEeeccccccC
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL---YQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv---~QVG~~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
++..+..|++|+++||+.|+|.|.+++-||+|.+.+ ..++.... +.+|. ++-+|.+++.+.-.- .
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e---~~g~e~~~~v~l~ig~----l~~~~~g~~~~~~v~-----~ 69 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVE---TNGDEYTAKVKLKIGP----LKGTFSGRVRFVNVD-----E 69 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceee---ecCCeEEEEEEEeecc----eeEEEEEEEEEcccc-----C
Confidence 356889999999999999999999999999999954 45554322 34442 246777776663201 1
Q ss_pred CCCCceEEEEEeecC---CCCceeeeEEEEEcCCCeeEE
Q 025783 197 PSGKKRDIEFKMIEG---DFQLFEGKWSIEQVTYSCLQI 232 (248)
Q Consensus 197 P~g~~rrI~f~lVeG---DFK~feG~W~fep~~~Gt~~v 232 (248)
| ++.|+++---| -|-.+...-.+++.++||++.
T Consensus 70 ~---~~~~~i~g~G~~~~g~~~~~~~v~l~~~g~gt~v~ 105 (146)
T COG3427 70 P---PRSITINGSGGGAAGFADGTVDVQLEPSGEGTRVN 105 (146)
T ss_pred C---CcEEEEEeecccccceeeeeeEEEEEEcCCCcEEE
Confidence 2 36777766542 377778888999999997654
No 35
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.69 E-value=0.0011 Score=54.11 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=58.9
Q ss_pred EEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeeceEEEEeEEEEeeccccccCCCCCc
Q 025783 123 SKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKK 201 (248)
Q Consensus 123 asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~~ 201 (248)
++..|++|+++||+.|+|++++..-||+|.+.+.+. +.... ..++...+ ...|..++.+ .+.+ .| +.
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~i--~~~~~g~~~~--~~~~---~~--~~ 68 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGPI--KGTFDGEVRI--TEID---PP--ES 68 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCCC--EEEEEEEEEE--EEEE---TT--TE
T ss_pred CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEeccE--EEEEEEEEEE--EEcC---CC--cc
Confidence 467899999999999999999999999999988765 33322 44554443 4566555444 4421 12 12
Q ss_pred eEEEEEeecCC-CCceeeeEEEEEcCCC-eeEEEec
Q 025783 202 RDIEFKMIEGD-FQLFEGKWSIEQVTYS-CLQIIQN 235 (248)
Q Consensus 202 rrI~f~lVeGD-FK~feG~W~fep~~~G-t~~vl~~ 235 (248)
..|.++--... --...+.-.+...+++ |.+...-
T Consensus 69 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~T~v~~~~ 104 (140)
T PF06240_consen 69 YTLEFEGRGRGGGSSASANITLSLEDDGGTRVTWSA 104 (140)
T ss_dssp EEEEEEEEECTCCEEEEEEEEEEECCCTCEEEEEEE
T ss_pred eEeeeeccCCccceEEEEEEEEEcCCCCCcEEEEEE
Confidence 23666665532 2233444444443333 5544433
No 36
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.65 E-value=0.0014 Score=59.58 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=57.5
Q ss_pred eeeecCCceEEEEEEcCCCcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEE
Q 025783 99 TQSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQI 169 (248)
Q Consensus 99 ~~~l~~~~v~V~v~~l~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QV 169 (248)
..+...+++.|..+. +.+...+.+.+.+++|+++++++|.|.+++++|++.|.++++|++-+..-.++++
T Consensus 59 ~l~~dkdgIkVytr~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~vY~~ 128 (236)
T cd08914 59 EVTSTVEKIKIYTLE-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQIYHI 128 (236)
T ss_pred EEEEccCCEEEEEec-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcCEEEE
Confidence 467778899999985 3333578899999999999999999999999999999999999996533235553
No 37
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.63 E-value=0.0029 Score=57.45 Aligned_cols=69 Identities=10% Similarity=0.192 Sum_probs=54.5
Q ss_pred eeecCCceEEEEEEcCCCcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEE
Q 025783 100 QSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQI 169 (248)
Q Consensus 100 ~~l~~~~v~V~v~~l~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QV 169 (248)
.....+++.|.... ..+...+.+...|++|++++|++|.|.+++++|.++|.+++++++-+....++++
T Consensus 63 l~~~~~gI~Vyt~~-~s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v 131 (240)
T cd08913 63 LSSEKNQVRLYTLE-EDKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHV 131 (240)
T ss_pred EEEccCCEEEEEEe-CCCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEE
Confidence 34456889998844 3333467888899999999999999999999999999999999996543334543
No 38
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.62 E-value=0.0011 Score=58.61 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=59.5
Q ss_pred eeeecCCceEEEEEEcCCCcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEe
Q 025783 99 TQSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIG 170 (248)
Q Consensus 99 ~~~l~~~~v~V~v~~l~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG 170 (248)
.-+..+.+|.|.....++.-..+.+...|++|++++|++|.|.+++++|.+.+.+++|+++-++...+ +++.
T Consensus 25 ~l~~~~~gI~Vy~k~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~ 97 (205)
T cd08874 25 SYQCLEKDVVIYYKVFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVH 97 (205)
T ss_pred EEEecCCCEEEEEecCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEe
Confidence 45667788999998877744578889999999999999999999999999999999999987655443 4443
No 39
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.62 E-value=0.00099 Score=58.06 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=54.8
Q ss_pred cCCceEEEEEEcCCCc-EEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCE
Q 025783 103 HGDGVCIEIKKLGRNS-RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF 163 (248)
Q Consensus 103 ~~~~v~V~v~~l~~~~-r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~ 163 (248)
...++.|..+..+++. ..+.+...|++|++++.++|.|.+.|++|+|.|.++++++..+..
T Consensus 29 ~~~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~ 90 (215)
T cd08877 29 ESEGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRA 90 (215)
T ss_pred cCCCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCc
Confidence 4678999999988884 688999999999999999999999999999999999999886543
No 40
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.44 E-value=0.0071 Score=48.77 Aligned_cols=103 Identities=8% Similarity=-0.009 Sum_probs=63.4
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCC-----cceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeecccccc
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN-----LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~-----~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~ 195 (248)
+..+..++||+++||+++||=+.+.+++.. +..+++--+.|+..+.......+ ..+....++ .+ .
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g----~~~~~~g~~--~~----~ 71 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGG----PEITVEARY--HD----I 71 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCC----CEEeeeEEE--EE----e
Confidence 345578999999999999999999999853 34445545556665542222122 222222211 22 2
Q ss_pred CCCCCceEEEEEeec--CC--CCceeeeEEEEEcCCCeeEEEecc
Q 025783 196 FPSGKKRDIEFKMIE--GD--FQLFEGKWSIEQVTYSCLQIIQNN 236 (248)
Q Consensus 196 ~P~g~~rrI~f~lVe--GD--FK~feG~W~fep~~~Gt~~vl~~~ 236 (248)
.| +++|.|+... ++ -..-.=.|.|++.++||+.++.-.
T Consensus 72 ~p---~~~l~~t~~~~~~~~~~~~s~v~~~l~~~~~gT~l~~~~~ 113 (143)
T cd08900 72 VP---DERIVYTYTMHIGGTLLSASLATVEFAPEGGGTRLTLTEQ 113 (143)
T ss_pred cC---CceEEEEEeeccCCccccceEEEEEEEECCCCEEEEEEEE
Confidence 23 4788877542 22 122345799999999998888644
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.42 E-value=0.0025 Score=49.10 Aligned_cols=94 Identities=22% Similarity=0.241 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeE-EEEeeccccccCCCCCceEEEE
Q 025783 128 DASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKG-VLDCYEKDLEIFPSGKKRDIEF 206 (248)
Q Consensus 128 ~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~Ftarv-vLdvtE~d~e~~P~g~~rrI~f 206 (248)
+||+++||+++||-+++.+| -.+....+-.+.|+..+. + +..+ ..+..+. ++++. | +++|.|
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W-~~~~~~~~~~~~Gg~~~~-~-~~~g----~~~~~~~~v~~~~-------p---~~~i~~ 63 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW-FTTSEAEMDFRPGGSFRF-M-DPDG----GEFGFDGTVLEVE-------P---PERIVF 63 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH-SEEEEEEEECSTTEEEEE-E-ETTS----EEEEEEEEEEEEE-------T---TTEEEE
T ss_pred CcCHHHHHHHHCCHhHHhhc-cCCCcceeeeecCCEEEE-E-ecCC----CCceeeEEEEEEe-------C---CEEEEE
Confidence 68999999999999999999 112333333356666654 2 2222 2333332 23332 3 378888
Q ss_pred EeecCC---CCceeeeEEEEEcCCCeeEEEeccce
Q 025783 207 KMIEGD---FQLFEGKWSIEQVTYSCLQIIQNNIF 238 (248)
Q Consensus 207 ~lVeGD---FK~feG~W~fep~~~Gt~~vl~~~~~ 238 (248)
+..-++ .....-.|.|++.++||..++.-..+
T Consensus 64 ~~~~~~~~~~~~~~v~~~~~~~~~~T~l~~~~~~~ 98 (124)
T PF08327_consen 64 TWRMPDDPDGPESRVTFEFEEEGGGTRLTLTHSGF 98 (124)
T ss_dssp EEEEETSSSCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEccCCCCCCceEEEEEEEEcCCcEEEEEEEEcC
Confidence 865443 55788999999988999988876443
No 42
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.41 E-value=0.0092 Score=48.39 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcc-ee---EEEEecCCEEEEEEEeec---ceeeceEEEEeEEEEeecccc
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLA-VS---QVVEKNDNFVRLYQIGQQ---NLAFGIKFNAKGVLDCYEKDL 193 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~-~S---rVLer~g~~vrv~QVG~~---~i~fg~~FtarvvLdvtE~d~ 193 (248)
|..+..|+||++.||+++||-+++.+|.+.-. .+ .+-.+.|+..++...... +..-|..+.... .+.+
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g--~v~~--- 76 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGG--RFLE--- 76 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEE--EEEE---
Confidence 56678899999999999999999999886321 22 222334555443222111 000011122221 2222
Q ss_pred ccCCCCCceEEEEEee--cCCCC-ceeeeEEEEEcCCCeeEEEeccce
Q 025783 194 EIFPSGKKRDIEFKMI--EGDFQ-LFEGKWSIEQVTYSCLQIIQNNIF 238 (248)
Q Consensus 194 e~~P~g~~rrI~f~lV--eGDFK-~feG~W~fep~~~Gt~~vl~~~~~ 238 (248)
..| +++|.|+.. ++... ...-.|.|++.++||+..++-..+
T Consensus 77 -v~p---~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~lt~~~~~~ 120 (146)
T cd08895 77 -LVP---NERIVYTDVFDDPSLSGEMTMTWTLSPVSGGTDVTIVQSGI 120 (146)
T ss_pred -EcC---CCEEEEEEEecCCCCCceEEEEEEEEecCCCEEEEEEEeCC
Confidence 234 478888864 22222 346789999999999998887654
No 43
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.34 E-value=0.0054 Score=49.40 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=62.8
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCCCC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~ 200 (248)
+.+++.|+||+++||+.+||-+++.+|.+.-...+ -+.|+..+..-... +..+.. .+.+ ..|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~--~~~Gg~~~~~~~~~-----~~~~~g----~~~~----~~p--- 63 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGR--LEEGKTVTWDWEMY-----GASVPV----NVLE----IEP--- 63 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCcc--ccCCCEEEEEEEcc-----CCceEE----EEEE----EcC---
Confidence 67899999999999999999999999754433322 23444433211100 111111 2222 223
Q ss_pred ceEEEEEeecCCCCceeeeEEEEEcC-CCeeEEEecccee
Q 025783 201 KRDIEFKMIEGDFQLFEGKWSIEQVT-YSCLQIIQNNIFV 239 (248)
Q Consensus 201 ~rrI~f~lVeGDFK~feG~W~fep~~-~Gt~~vl~~~~~~ 239 (248)
+++|.|+...++ -.-.-.|.|++.+ +||+..++-..|-
T Consensus 64 ~~~l~~~w~~~~-~~s~v~~~l~~~~~ggT~ltl~~~~~~ 102 (136)
T cd08901 64 NKRIVIEWGDPG-EPTTVEWTFEELDDGRTFVTITESGFP 102 (136)
T ss_pred CCEEEEEecCCC-CCEEEEEEEEECCCCcEEEEEEECCCC
Confidence 478999876532 1244689999998 8899888866553
No 44
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.26 E-value=0.003 Score=55.37 Aligned_cols=62 Identities=15% Similarity=0.334 Sum_probs=53.2
Q ss_pred ecCCceEEEEEEcCCCcEEEEEEEEEcCCHHHHH-HHHhChhhhccccCCcceeEEEEecCCE
Q 025783 102 LHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVW-HILTDYEKLADFVPNLAVSQVVEKNDNF 163 (248)
Q Consensus 102 l~~~~v~V~v~~l~~~~r~V~asi~V~ap~e~Vw-~vLTDYEryPeFIP~~~~SrVLer~g~~ 163 (248)
.+..++.|..+..++....+++...|++++++++ .++.|++.+++|.++|.++++|++-+..
T Consensus 32 ~~~~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~ 94 (209)
T cd08905 32 VAENGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKD 94 (209)
T ss_pred ecCCCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCC
Confidence 3466788888877765577889999999999999 8888999999999999999999987643
No 45
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=97.21 E-value=0.01 Score=51.49 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=76.7
Q ss_pred cCCceEEEEEEcCCC-c-EEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEE-EEEEeecceeeceE
Q 025783 103 HGDGVCIEIKKLGRN-S-RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVR-LYQIGQQNLAFGIK 179 (248)
Q Consensus 103 ~~~~v~V~v~~l~~~-~-r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vr-v~QVG~~~i~fg~~ 179 (248)
...+|+|..++.+++ . ..+++...|++++++|++++-|.. ++|.+.|.+++++++-+.... .+++-... +.
T Consensus 26 ~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p----~p 99 (197)
T cd08869 26 SSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSM----AP 99 (197)
T ss_pred cCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCC----CC
Confidence 467999999999766 3 467999999999999999998863 899999999999999654332 23322111 22
Q ss_pred EEEe--EEEEeeccccccCCCCCceEEEEEeec-------CC--CCceeeeEEEEEcCCC-eeE
Q 025783 180 FNAK--GVLDCYEKDLEIFPSGKKRDIEFKMIE-------GD--FQLFEGKWSIEQVTYS-CLQ 231 (248)
Q Consensus 180 Ftar--vvLdvtE~d~e~~P~g~~rrI~f~lVe-------GD--FK~feG~W~fep~~~G-t~~ 231 (248)
+..| +.+..... ..++| .-.|.++.++ |- ...+.|.|.++|.++| |++
T Consensus 100 v~~RDfV~~r~~~~---~~~~g-~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~v 159 (197)
T cd08869 100 HPTRDYVVLRTWRT---DLPKG-ACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRV 159 (197)
T ss_pred CCCceEEEEEEEEe---cCCCC-cEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEE
Confidence 2233 22211111 11211 1345666663 22 2456899999999755 544
No 46
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.20 E-value=0.0098 Score=52.02 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=52.7
Q ss_pred eeeecCCceEEEEEEcCCCc-EEEEEEEEE-cCCHHHHHHHHhChhhhccccCCcceeEEEEec
Q 025783 99 TQSLHGDGVCIEIKKLGRNS-RRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKN 160 (248)
Q Consensus 99 ~~~l~~~~v~V~v~~l~~~~-r~V~asi~V-~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~ 160 (248)
+.....+++.|.-+..+++. ..+++...+ +++++++++++.|.+.+++|.+.|.+.++|++.
T Consensus 24 ~l~~~~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~ 87 (207)
T cd08911 24 EPFIEKKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDED 87 (207)
T ss_pred EEEEEcCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEcc
Confidence 34556788999999888544 567776655 999999999999999999999999999999985
No 47
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.17 E-value=0.012 Score=47.98 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=64.1
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCC--------cceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccc
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN--------LAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKD 192 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~--------~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d 192 (248)
|+.++.|+||+++||+.+|| .+.++.+- ...+.+-.+.|+.... .+..+- ..+.. .++++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~--~~~~g~---~~~~g-~v~~v---- 69 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE--IGEDGT---ECEWG-TVLAW---- 69 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE--ecCCCc---EeceE-EEEEE----
Confidence 67899999999999999999 47777542 2445555566665542 111110 11111 22322
Q ss_pred cccCCCCCceEEEEEee-cCCCC-----ceeeeEEEEEcC-CCeeEEEeccceec
Q 025783 193 LEIFPSGKKRDIEFKMI-EGDFQ-----LFEGKWSIEQVT-YSCLQIIQNNIFVK 240 (248)
Q Consensus 193 ~e~~P~g~~rrI~f~lV-eGDFK-----~feG~W~fep~~-~Gt~~vl~~~~~~~ 240 (248)
.| +++|.|+-. ..++. .-.-.|.|++.+ +||+..|+-..|-.
T Consensus 70 ---~p---~~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~ 118 (149)
T cd08891 70 ---EP---PSRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFER 118 (149)
T ss_pred ---cC---CCEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccc
Confidence 23 478888765 22222 346789999999 99999888777654
No 48
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=97.16 E-value=0.013 Score=50.80 Aligned_cols=62 Identities=11% Similarity=0.241 Sum_probs=53.5
Q ss_pred CC-ceEEEEEEcCCCcEEEEEEEEEcCCHHHHHH-HHhChhhhccccCCcceeEEEEecCCEEE
Q 025783 104 GD-GVCIEIKKLGRNSRRIRSKIEIDASLDTVWH-ILTDYEKLADFVPNLAVSQVVEKNDNFVR 165 (248)
Q Consensus 104 ~~-~v~V~v~~l~~~~r~V~asi~V~ap~e~Vw~-vLTDYEryPeFIP~~~~SrVLer~g~~vr 165 (248)
.. ++.|..+..++....+.+...|++++++||+ ++.|.+.+++|.+.|.+++++++-++...
T Consensus 32 ~~~~i~i~~r~~~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~ 95 (208)
T cd08868 32 TTWGDVVYSRNVPGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTD 95 (208)
T ss_pred cCCCCEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcE
Confidence 44 8999999988766678899999999999986 67899999999999999999999765443
No 49
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.15 E-value=0.025 Score=45.93 Aligned_cols=101 Identities=15% Similarity=0.033 Sum_probs=63.3
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCc----ceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNL----AVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIF 196 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~----~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~ 196 (248)
+..+..++||+++||+.+||=+.+.+|...- ..+++--+.|+..+..-.+..+ ..+..... +.+ ..
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g----~~~~~~g~--~~e----i~ 71 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDG----EEMGFHGV--YHE----VT 71 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCC----CEecceEE--EEE----Ec
Confidence 4567899999999999999999999997642 2344444566665543221111 11111111 122 23
Q ss_pred CCCCceEEEEEeecCC--CCceeeeEEEEEcCCCeeEEEe
Q 025783 197 PSGKKRDIEFKMIEGD--FQLFEGKWSIEQVTYSCLQIIQ 234 (248)
Q Consensus 197 P~g~~rrI~f~lVeGD--FK~feG~W~fep~~~Gt~~vl~ 234 (248)
| +++|.|...-.+ -....-.|.|++.++||+..|+
T Consensus 72 p---~~~l~~t~~~~~~~~~~s~v~~~l~~~~~gT~l~l~ 108 (142)
T cd07826 72 P---PERIVQTEEFEGLPDGVALETVTFTELGGRTRLTAT 108 (142)
T ss_pred C---CCEEEEEeEecCCCCCceEEEEEEEECCCCEEEEEE
Confidence 3 478888755222 2344668999999999998887
No 50
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=97.12 E-value=0.018 Score=47.25 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=53.3
Q ss_pred ecCCceEEEEEEcCCCc-EEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCE
Q 025783 102 LHGDGVCIEIKKLGRNS-RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF 163 (248)
Q Consensus 102 l~~~~v~V~v~~l~~~~-r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~ 163 (248)
...+++.|..++.+++. ..+.+...|++++++|++++.|.+.+++|.|.+.+++++++-++.
T Consensus 21 ~~~~~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~ 83 (193)
T cd00177 21 KEKDGVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEH 83 (193)
T ss_pred EECCcEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCC
Confidence 34557888888877644 678899999999999999999999999999999999999997653
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.08 E-value=0.021 Score=49.80 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=51.8
Q ss_pred eeecCCc----eEEEEEEcCCCc-EEEEEEEEE-cCCHHHHHHHHhChhhhccccCCcceeEEEEecCC
Q 025783 100 QSLHGDG----VCIEIKKLGRNS-RRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN 162 (248)
Q Consensus 100 ~~l~~~~----v~V~v~~l~~~~-r~V~asi~V-~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~ 162 (248)
.....++ +.|--+..++.. ..+.+...+ +++++++++++.|.+.+++|.+.|.+.++++..++
T Consensus 26 ~~~~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~ 94 (209)
T cd08870 26 QVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEK 94 (209)
T ss_pred EhhhccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCC
Confidence 3344556 788777766444 578888888 56999999999999999999999999999998764
No 52
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=96.96 E-value=0.011 Score=52.53 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCceEEEEEEcCCCc--EEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCE
Q 025783 104 GDGVCIEIKKLGRNS--RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF 163 (248)
Q Consensus 104 ~~~v~V~v~~l~~~~--r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~ 163 (248)
..++++...|..+|+ +.+++.+.|+++++++..+|.|. +++|.+.|.+++++++-+..
T Consensus 35 ~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~ 94 (204)
T cd08908 35 SEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQ 94 (204)
T ss_pred CCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCC
Confidence 567888899988777 68999999999999999999888 89999999999999996643
No 53
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.94 E-value=0.0026 Score=56.04 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCceEEEEEEcCCCcEEEEEEEEEcCCHHHHH-HHHhChhhhccccCCcceeEEEEecCCE
Q 025783 104 GDGVCIEIKKLGRNSRRIRSKIEIDASLDTVW-HILTDYEKLADFVPNLAVSQVVEKNDNF 163 (248)
Q Consensus 104 ~~~v~V~v~~l~~~~r~V~asi~V~ap~e~Vw-~vLTDYEryPeFIP~~~~SrVLer~g~~ 163 (248)
..++.|.....++....+.+...|++|++++| ++|.|.+.+++|.++|.+++++++-+..
T Consensus 34 ~~gi~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~ 94 (209)
T cd08906 34 DNGDTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDN 94 (209)
T ss_pred CCCCEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCC
Confidence 47899999888766678899999999999998 6999999999999999999999996643
No 54
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=96.94 E-value=0.024 Score=47.70 Aligned_cols=110 Identities=17% Similarity=0.359 Sum_probs=70.8
Q ss_pred cEEEEEEEEEcCCHHHHHHHHhC-hhhhccccCCcc-eeEEEEecCC---EEEEEEEeecceeeceEEEEeEEEEeeccc
Q 025783 118 SRRIRSKIEIDASLDTVWHILTD-YEKLADFVPNLA-VSQVVEKNDN---FVRLYQIGQQNLAFGIKFNAKGVLDCYEKD 192 (248)
Q Consensus 118 ~r~V~asi~V~ap~e~Vw~vLTD-YEryPeFIP~~~-~SrVLer~g~---~vrv~QVG~~~i~fg~~FtarvvLdvtE~d 192 (248)
...+...+.+++|++++|+++.+ -.-+|+.+|... ++++++.+|+ .++....+..+- .+ ..+-+++...
T Consensus 3 ~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~---~~-~~Kekve~~D-- 76 (151)
T PF00407_consen 3 VGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGP---FK-YVKEKVEAID-- 76 (151)
T ss_dssp EEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSS---EE-EEEEEEEEEE--
T ss_pred cEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCC---cc-eeEEEEEeec--
Confidence 34678889999999999999994 556788888764 5567777653 555444332221 11 1222232211
Q ss_pred cccCCCCCceEEEEEeecCC----CCceeeeEEEEEcCCC-eeEEEecccee
Q 025783 193 LEIFPSGKKRDIEFKMIEGD----FQLFEGKWSIEQVTYS-CLQIIQNNIFV 239 (248)
Q Consensus 193 ~e~~P~g~~rrI~f~lVeGD----FK~feG~W~fep~~~G-t~~vl~~~~~~ 239 (248)
. +++.|.|++++|| ++.|...-++.|.++| |.+..+-.|..
T Consensus 77 ----~--~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~ 122 (151)
T PF00407_consen 77 ----E--ENKTITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEK 122 (151)
T ss_dssp ----T--TTTEEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ----C--CCcEEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEe
Confidence 1 3589999999998 4567777777776666 77777777654
No 55
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=96.75 E-value=0.034 Score=44.33 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=61.7
Q ss_pred EEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCCCC
Q 025783 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGK 200 (248)
Q Consensus 121 V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~ 200 (248)
+..++.++||+++||+.+||=+.+.+|... .+.+-.+.|+...... | .+.. .++++. |
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~--~~~~d~~~GG~~~~~~-g--------~~~g-~~~~i~-------p--- 59 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRS--PAKVDAKVGGKFSLFG-G--------NITG-EFVELV-------P--- 59 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCC--CceecCCCCCEEEEeC-C--------ceEE-EEEEEc-------C---
Confidence 567789999999999999999999998643 2233334555543211 1 1111 123322 3
Q ss_pred ceEEEEEeec--CC-CCceeeeEEEEEcCCCeeEEEeccce
Q 025783 201 KRDIEFKMIE--GD-FQLFEGKWSIEQVTYSCLQIIQNNIF 238 (248)
Q Consensus 201 ~rrI~f~lVe--GD-FK~feG~W~fep~~~Gt~~vl~~~~~ 238 (248)
+++|.|.-.- .+ -..-.=.|.|++.++||+..|+-.-+
T Consensus 60 ~~~l~~~w~~~~~~~~~~s~v~~~l~~~~~gT~ltl~~~g~ 100 (126)
T cd08892 60 GKKIVQKWRFKSWPEGHYSTVTLTFTEKDDETELKLTQTGV 100 (126)
T ss_pred CCEEEEEEEcCCCCCCCcEEEEEEEEECCCCEEEEEEEECC
Confidence 3677766542 22 13356799999999999988876654
No 56
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.35 E-value=0.12 Score=45.34 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=52.7
Q ss_pred eeecCCceEEEEEEcCCCc-EEEEEEEEE-cCCHHHHHHHHhChhhhccccCCcceeEEEEecCC
Q 025783 100 QSLHGDGVCIEIKKLGRNS-RRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN 162 (248)
Q Consensus 100 ~~l~~~~v~V~v~~l~~~~-r~V~asi~V-~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~ 162 (248)
.....++|.|..+..+++. ..+.+...+ .+++++++++|.|.+..+++.+.|.+++++++-+.
T Consensus 27 ~~~~~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~ 91 (222)
T cd08871 27 LKYNKNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNP 91 (222)
T ss_pred EEEcCCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCC
Confidence 3345678999888887766 467777776 69999999999999999999999999999998653
No 57
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.13 Score=42.68 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeecccccc
Q 025783 116 RNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEI 195 (248)
Q Consensus 116 ~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~ 195 (248)
...+.+.....|++|+++||+.+||=+.+++|+. -.-.+.--+.++..+....+..+= +..+... ++++
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~--~~~~~~~-~~~v------- 73 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGP--VHSFEGE-YLEV------- 73 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCC--eeecceE-EEEE-------
Confidence 4456889999999999999999999999999987 221222223333332211121110 0122222 2222
Q ss_pred CCCCCceEEEEEeecCC----CCceeeeEEEEEcCCC
Q 025783 196 FPSGKKRDIEFKMIEGD----FQLFEGKWSIEQVTYS 228 (248)
Q Consensus 196 ~P~g~~rrI~f~lVeGD----FK~feG~W~fep~~~G 228 (248)
.| +++|.|.-..++ +..-...|.|.+..+|
T Consensus 74 ~p---~~rIv~tw~~~~~~~~~~~~~v~~~l~~~~~g 107 (149)
T COG3832 74 VP---PERIVFTWDFDEDGEPFLKSLVTITLTPEDDG 107 (149)
T ss_pred cC---CcEEEEEeccCCCCCcccCceEEEEEEEecCC
Confidence 33 378888777542 4466889999997776
No 58
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=95.76 E-value=0.34 Score=41.08 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=45.4
Q ss_pred ceEEEEEEcCC--CcEEEEEEEEEcCCHHH-HHHHHhChhhhccccCCcceeEEEEecCCE
Q 025783 106 GVCIEIKKLGR--NSRRIRSKIEIDASLDT-VWHILTDYEKLADFVPNLAVSQVVEKNDNF 163 (248)
Q Consensus 106 ~v~V~v~~l~~--~~r~V~asi~V~ap~e~-Vw~vLTDYEryPeFIP~~~~SrVLer~g~~ 163 (248)
+..+.-+..++ +...+++...|++++++ +-+++.|.+.+++|.+.|.++++++.-++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~ 90 (206)
T smart00234 30 GDEVRSILSPGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG 90 (206)
T ss_pred cceEEEEccCCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC
Confidence 33444444443 34688999999999997 668999999999999999999999986543
No 59
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.38 E-value=0.11 Score=45.62 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred cCCceEEEEEEcCC-CcEEEEEEEEEcCCHHHHHHHHhChhhh--ccccCCcceeEEEEecCCEEE
Q 025783 103 HGDGVCIEIKKLGR-NSRRIRSKIEIDASLDTVWHILTDYEKL--ADFVPNLAVSQVVEKNDNFVR 165 (248)
Q Consensus 103 ~~~~v~V~v~~l~~-~~r~V~asi~V~ap~e~Vw~vLTDYEry--PeFIP~~~~SrVLer~g~~vr 165 (248)
.+.++.|..++... ....+.+...|+++++++|++|-|.+++ +++.+.|.+++++++-++...
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~ 94 (208)
T cd08903 29 RTNEVAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVS 94 (208)
T ss_pred cCCCEEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEE
Confidence 56789999996522 2234778889999999999999999887 999999999999999765544
No 60
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=95.07 E-value=0.44 Score=42.47 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=74.0
Q ss_pred CCceEEEEEEcCCCc--EEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEEEE-EEEeecceeeceEE
Q 025783 104 GDGVCIEIKKLGRNS--RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL-YQIGQQNLAFGIKF 180 (248)
Q Consensus 104 ~~~v~V~v~~l~~~~--r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~vrv-~QVG~~~i~fg~~F 180 (248)
..++++...+..+++ +.+++++.|++++++|...|.+ ..++|..++.+++++++-+....+ +.+-. .. ..+
T Consensus 35 ~~~~e~~ykK~~d~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~-~~---~P~ 108 (205)
T cd08909 35 SDNTELAYKKVGDGNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLN-CM---APH 108 (205)
T ss_pred cCCeEEEEecCCCCCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEee-cC---CCC
Confidence 467888888877765 6889999999999999888877 478999999999999996543322 22211 11 111
Q ss_pred EEe--EEEEeeccccccCCCCCceEEEEEeecCC---C------CceeeeEEEEEcCCCe
Q 025783 181 NAK--GVLDCYEKDLEIFPSGKKRDIEFKMIEGD---F------QLFEGKWSIEQVTYSC 229 (248)
Q Consensus 181 tar--vvLdvtE~d~e~~P~g~~rrI~f~lVeGD---F------K~feG~W~fep~~~Gt 229 (248)
..| ++++.... ..++|. --|..+.++.+ . ..+.|.|.++|.+.|.
T Consensus 109 ~~RD~v~~R~w~~---~~~~G~-~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~ 164 (205)
T cd08909 109 PSRDFVVLRSWRT---DLPKGA-CSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGK 164 (205)
T ss_pred CCCEEEEEEEEEE---eCCCCc-EEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCC
Confidence 122 22221111 123332 34566666643 2 2357999999998763
No 61
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=94.95 E-value=0.22 Score=40.37 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=53.6
Q ss_pred EcCCHHHHHHHHhChhhhccc-cCCcceeEEEEecCCEEEEEEEeecceeeceEEEEeEEEEeeccccccCCCCCceEEE
Q 025783 127 IDASLDTVWHILTDYEKLADF-VPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKFNAKGVLDCYEKDLEIFPSGKKRDIE 205 (248)
Q Consensus 127 V~ap~e~Vw~vLTDYEryPeF-IP~~~~SrVLer~g~~vrv~QVG~~~i~fg~~FtarvvLdvtE~d~e~~P~g~~rrI~ 205 (248)
++||+++||+.+||=+.+.+| .+ ..+.+--+.|+..+... + .+.. ..+++ .| +++|.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~--~~~~~d~~~GG~f~~~~-~--------~~~G-~~~ev-------~p---p~rlv 58 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG--SPAEMDAKVGGKFSLFN-G--------SVEG-EFTEL-------EK---PKKIV 58 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC--CCccccCCcCCEEEEec-C--------ceEE-EEEEE-------cC---CCEEE
Confidence 479999999999999999998 33 12233334455443211 1 1111 12222 23 37787
Q ss_pred EEeecCCC---CceeeeEEEEEcC-CCeeEEEeccce
Q 025783 206 FKMIEGDF---QLFEGKWSIEQVT-YSCLQIIQNNIF 238 (248)
Q Consensus 206 f~lVeGDF---K~feG~W~fep~~-~Gt~~vl~~~~~ 238 (248)
|.---++. ..-.-.|.|++.+ +||+..++-.-+
T Consensus 59 ~tw~~~~~~~~~~s~vt~~~~~~~~g~T~lt~~~~g~ 95 (132)
T PTZ00220 59 QKWRFRDWEEDVYSKVTIEFRAVEEDHTELKLTQTGI 95 (132)
T ss_pred EEEecCCCCCCCceEEEEEEEeCCCCcEEEEEEEecC
Confidence 77643221 1245789999975 578888876644
No 62
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=94.73 E-value=0.2 Score=45.06 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=55.9
Q ss_pred eeeecCCceEEEEEEcCCCcE---EEEEEEEEc-CCHHHHHHHHhChhhhccccCCcceeEEEEecCCE
Q 025783 99 TQSLHGDGVCIEIKKLGRNSR---RIRSKIEID-ASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF 163 (248)
Q Consensus 99 ~~~l~~~~v~V~v~~l~~~~r---~V~asi~V~-ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~ 163 (248)
.....++++.|..+..+.+.. .+.+...|+ ++++++++++-|.+.+.+|...|.+++++++-+..
T Consensus 29 ~l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~ 97 (235)
T cd08872 29 QLFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQD 97 (235)
T ss_pred EEEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCC
Confidence 345568899999998877653 488999999 99999999999999999999999999999986543
No 63
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.11 E-value=0.71 Score=39.92 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=51.1
Q ss_pred cCCceEEEEEEcCCCc-EEEEEEEEEcCCHHHHHHHHhC--hhhhccccCCcceeEEEEecCCEE
Q 025783 103 HGDGVCIEIKKLGRNS-RRIRSKIEIDASLDTVWHILTD--YEKLADFVPNLAVSQVVEKNDNFV 164 (248)
Q Consensus 103 ~~~~v~V~v~~l~~~~-r~V~asi~V~ap~e~Vw~vLTD--YEryPeFIP~~~~SrVLer~g~~v 164 (248)
...++.|..++..... ..+.+...|++++++|+++|-| .+..+++-+.|.+++++++-+...
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~ 93 (206)
T cd08867 29 TVKNITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDL 93 (206)
T ss_pred cCCCcEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCe
Confidence 5567888887544433 4688999999999999999999 899999999999999999965433
No 64
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=90.02 E-value=2.4 Score=37.64 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=54.7
Q ss_pred cCCceEEEEEEc-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecC-CEEEEEEEe
Q 025783 103 HGDGVCIEIKKL-GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND-NFVRLYQIG 170 (248)
Q Consensus 103 ~~~~v~V~v~~l-~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g-~~vrv~QVG 170 (248)
.+.++.|..++. +....-..++..|+++++++|+++-|.|...+|=+.|.+.+++++=+ +....+++.
T Consensus 29 ~~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~ 98 (204)
T cd08904 29 TSKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTIT 98 (204)
T ss_pred cCCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEec
Confidence 457888888875 55556778888999999999999999999999999999999999844 333334343
No 65
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=89.95 E-value=1.6 Score=36.97 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=33.2
Q ss_pred CCHHHHHH-HHhChhhhccccCCcceeEEEEecCCEE-EEEEEe
Q 025783 129 ASLDTVWH-ILTDYEKLADFVPNLAVSQVVEKNDNFV-RLYQIG 170 (248)
Q Consensus 129 ap~e~Vw~-vLTDYEryPeFIP~~~~SrVLer~g~~v-rv~QVG 170 (248)
...+|+|+ ++...++=-.|+|+|.+|+|++++++.+ |..+.|
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l~Rel~f~ 60 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVLERELTFG 60 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCCEEEEEEEEC
Confidence 67899997 5567777778999999999999998754 445554
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=86.95 E-value=2.4 Score=37.13 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=49.2
Q ss_pred eeeecCCceEEEEEEcCCCc-EEEEEEEEEc-CCHHHHHHHHhChhhhccccCCcceeEEEEec
Q 025783 99 TQSLHGDGVCIEIKKLGRNS-RRIRSKIEID-ASLDTVWHILTDYEKLADFVPNLAVSQVVEKN 160 (248)
Q Consensus 99 ~~~l~~~~v~V~v~~l~~~~-r~V~asi~V~-ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~ 160 (248)
+.....+++.|..+..+++. ..+++...++ ++++++++++.|.+.+++|.+.|.+ +++..
T Consensus 28 ~l~~~~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~ 89 (207)
T cd08910 28 ELLVESSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKE 89 (207)
T ss_pred EEEEecCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeec
Confidence 35566788999988776555 5788888998 7999999999999999999999987 45543
No 67
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=86.50 E-value=17 Score=31.31 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=68.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCEE----EE-EEEeecceeeceEEEEeEEEEeeccccc
Q 025783 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFV----RL-YQIGQQNLAFGIKFNAKGVLDCYEKDLE 194 (248)
Q Consensus 120 ~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~v----rv-~QVG~~~i~fg~~FtarvvLdvtE~d~e 194 (248)
.+.....|++|.|.||+.-+.-+++...-|--. |+-+.+..+ ++ .-++--++..|++-.++ . +|+-
T Consensus 3 tF~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~Ar--h--te~~-- 73 (153)
T COG4276 3 TFVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVAR--H--TESG-- 73 (153)
T ss_pred ceEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEEE--e--eecc--
Confidence 345667899999999999999999999887766 343443222 21 11111111112233333 2 2210
Q ss_pred cCCCCCceEEEEEeecCCCCce--eeeEEEEEcCCCeeEEEeccceeccc
Q 025783 195 IFPSGKKRDIEFKMIEGDFQLF--EGKWSIEQVTYSCLQIIQNNIFVKLC 242 (248)
Q Consensus 195 ~~P~g~~rrI~f~lVeGDFK~f--eG~W~fep~~~Gt~~vl~~~~~~~~~ 242 (248)
+.+ ..+-.=.++.|||+.+ +-.=+|.+.+++|.-+=...+.+|.+
T Consensus 74 ~d~---~~~FtDv~i~gPfp~~~WrHtH~F~~egg~TvliD~Vsye~p~g 120 (153)
T COG4276 74 FDN---GSRFTDVCITGPFPALNWRHTHNFVDEGGGTVLIDSVSYELPAG 120 (153)
T ss_pred cCC---cceeeeeeecCCccceeeEEEeeeecCCCcEEEEeeEEeeccCc
Confidence 122 2566667889999995 44445888888887777777777765
No 68
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=84.60 E-value=3.8 Score=34.80 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=26.4
Q ss_pred cCCHHHHHHHH-hChhhhccccCCcceeEEEEecCCEE-EEEEEe
Q 025783 128 DASLDTVWHIL-TDYEKLADFVPNLAVSQVVEKNDNFV-RLYQIG 170 (248)
Q Consensus 128 ~ap~e~Vw~vL-TDYEryPeFIP~~~~SrVLer~g~~v-rv~QVG 170 (248)
..+.+|||+=| ...++=-.|+|++.+|+|+++.++.+ |-.+.|
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg 61 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFG 61 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEET
T ss_pred ccCHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEEC
Confidence 45778999755 55666678999999999999997765 434444
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=82.29 E-value=28 Score=29.13 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=69.7
Q ss_pred CceEEEEEEcCC----CcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEe-cCCEEEEEEEeecceeeceE
Q 025783 105 DGVCIEIKKLGR----NSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEK-NDNFVRLYQIGQQNLAFGIK 179 (248)
Q Consensus 105 ~~v~V~v~~l~~----~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer-~g~~vrv~QVG~~~i~fg~~ 179 (248)
.+..+.+.+.+. ....+.+...|++++++++..+-|-.. +|-+.|.++++++. +++....+.+..... +..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~--~~p 103 (206)
T PF01852_consen 28 KNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPW--PGP 103 (206)
T ss_dssp TTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CT--TTT
T ss_pred CCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccC--CCC
Confidence 444455555532 446889999999999988888888777 99999999999998 344322233221111 001
Q ss_pred EEEe--EEEEeeccccccCCCCCceEEEEEeecCC-C----------CceeeeEEEEEcCCC-eeE
Q 025783 180 FNAK--GVLDCYEKDLEIFPSGKKRDIEFKMIEGD-F----------QLFEGKWSIEQVTYS-CLQ 231 (248)
Q Consensus 180 Ftar--vvLdvtE~d~e~~P~g~~rrI~f~lVeGD-F----------K~feG~W~fep~~~G-t~~ 231 (248)
+..| +.+..... ..+ ...-|.++.++.+ + +.+.+.|.|++.++| |.+
T Consensus 104 ~~~RDfv~~~~~~~----~~~-~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~v 164 (206)
T PF01852_consen 104 VSPRDFVFLRSWRK----DED-GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRV 164 (206)
T ss_dssp SSEEEEEEEEEEEE----CTT-SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEE
T ss_pred CCCcEEEEEEEEEE----ecc-ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceE
Confidence 2222 11211111 111 1234555555422 1 357799999999999 544
No 70
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=82.00 E-value=29 Score=29.00 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=65.9
Q ss_pred EEEEEEcCCHHHHHHHHhChhhhcccc---CC-cceeEEEEecCCEE--EEEE-Eeeccee-eceEEE-EeEEEEeeccc
Q 025783 122 RSKIEIDASLDTVWHILTDYEKLADFV---PN-LAVSQVVEKNDNFV--RLYQ-IGQQNLA-FGIKFN-AKGVLDCYEKD 192 (248)
Q Consensus 122 ~asi~V~ap~e~Vw~vLTDYEryPeFI---P~-~~~SrVLer~g~~v--rv~Q-VG~~~i~-fg~~Ft-arvvLdvtE~d 192 (248)
..+..+++|+++||++++|=+=+.+-+ .. ..+...++..++.+ .+.| +....+. +--+|- ....+..++
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e-- 79 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE-- 79 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE--
Confidence 567889999999999999964333322 22 23334344454443 3333 2221220 000110 112222222
Q ss_pred cccC-C-CCCceEEEEEee-cCCCCceeeeEEEEEcCCCeeEEEeccceecccCc
Q 025783 193 LEIF-P-SGKKRDIEFKMI-EGDFQLFEGKWSIEQVTYSCLQIIQNNIFVKLCIF 244 (248)
Q Consensus 193 ~e~~-P-~g~~rrI~f~lV-eGDFK~feG~W~fep~~~Gt~~vl~~~~~~~~~~~ 244 (248)
.+ | ++.....++..- .|.==.+.|.-+|.+.++||...+.-+.-|+.+.+
T Consensus 80 --~w~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~~~gt~~~~~g~v~v~VPlv 132 (159)
T PF10698_consen 80 --TWTPLDDGRRTGTFTVSIPGAPVSISGTMRLRPDGGGTRLTVEGEVKVKVPLV 132 (159)
T ss_pred --EEecCCCCeEEEEEEEEecCceEEEEEEEEEecCCCCEEEEEEEEEEEEEccc
Confidence 12 1 111234444432 35555679999999999999999999998888765
No 71
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=69.40 E-value=11 Score=33.76 Aligned_cols=59 Identities=7% Similarity=0.012 Sum_probs=48.4
Q ss_pred CceEEEEEEc-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhccccCCcceeEEEEecCCE
Q 025783 105 DGVCIEIKKL-GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF 163 (248)
Q Consensus 105 ~~v~V~v~~l-~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g~~ 163 (248)
+++.|..+.- +-+..-.++...|+..++++|+.|.+.....+|=|++++++|+++=+..
T Consensus 32 ~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~d 91 (202)
T cd08902 32 KDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEEN 91 (202)
T ss_pred CCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCC
Confidence 7788888855 4444456667788999999999999999899999999999999985443
No 72
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=66.08 E-value=3.2 Score=31.76 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=17.3
Q ss_pred EEEEEeec-CCCCceeeeEEEEEc
Q 025783 203 DIEFKMIE-GDFQLFEGKWSIEQV 225 (248)
Q Consensus 203 rI~f~lVe-GDFK~feG~W~fep~ 225 (248)
...|++.. |=+|.|+|.|+++|+
T Consensus 19 t~kykk~K~~fMK~FEGswKVepl 42 (74)
T PF02713_consen 19 TAKYKKEKMMFMKVFEGSWKVEPL 42 (74)
T ss_pred HHHHhhhheeeeeeecceeEEEee
Confidence 45555544 447999999999996
No 73
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=49.96 E-value=37 Score=30.60 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=44.8
Q ss_pred CCceEEEEEEcCCCc--EEEEEEEEEcC-CHHHHHHHHhChhhhccccCCcceeEEEEecC
Q 025783 104 GDGVCIEIKKLGRNS--RRIRSKIEIDA-SLDTVWHILTDYEKLADFVPNLAVSQVVEKND 161 (248)
Q Consensus 104 ~~~v~V~v~~l~~~~--r~V~asi~V~a-p~e~Vw~vLTDYEryPeFIP~~~~SrVLer~g 161 (248)
..+++|.+++.+++. +.+.+++.|++ |++.++++|-| + ..|=+++.+++++++=+
T Consensus 35 ~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d--R-~~WD~~m~e~~~Ie~Ld 92 (205)
T cd08907 35 PDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE--R-HLWDEDLLHSQVIEALE 92 (205)
T ss_pred CCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc--h-hhhhHHHHhhhhheeec
Confidence 467999999998877 78888888887 56667899999 3 47888999999998843
No 74
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=39.36 E-value=83 Score=33.43 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=43.3
Q ss_pred EEEEEEEEEcCCHHHHHHHHhChh-hhccccCCcceeEEEEecCCEE-EEEEEeecc
Q 025783 119 RRIRSKIEIDASLDTVWHILTDYE-KLADFVPNLAVSQVVEKNDNFV-RLYQIGQQN 173 (248)
Q Consensus 119 r~V~asi~V~ap~e~Vw~vLTDYE-ryPeFIP~~~~SrVLer~g~~v-rv~QVG~~~ 173 (248)
+.+.+.-+|++++++||++|.+.+ .-.+|=..+.+.+|+++=++.. .+++.....
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~ 283 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLD 283 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccc
Confidence 578888899999999999999887 5667889999999999965544 345554433
No 75
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=27.06 E-value=87 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=29.2
Q ss_pred CCCcEEEEEEEEEcCCHHHHHHHHhChhhhcccc
Q 025783 115 GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFV 148 (248)
Q Consensus 115 ~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFI 148 (248)
.++-++|..++.+..+.++++++|.+.|....|+
T Consensus 44 ~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l 77 (110)
T PF10741_consen 44 DGNFRRISVRVSLEGDIEALQAFLYALESGRPFL 77 (110)
T ss_pred CCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeE
Confidence 3345789999999999999999999999987654
No 76
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.19 E-value=1e+02 Score=27.66 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=33.4
Q ss_pred eeeecCCceEEEEEEcCCCcEEEEEEEEEcCCHHHHHHHHhChhhhcccc
Q 025783 99 TQSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFV 148 (248)
Q Consensus 99 ~~~l~~~~v~V~v~~l~~~~r~V~asi~V~ap~e~Vw~vLTDYEryPeFI 148 (248)
-..+..|+++++|.+.+-|+ ++.|.+.|-+.+.-...+|+|+
T Consensus 111 P~v~~NG~i~L~V~~fS~G~--------L~LPis~VLqym~s~y~lPefV 152 (197)
T COG4698 111 PTVLQNGDIELSVTSFSLGG--------LPLPISHVLQYMKSMYDLPEFV 152 (197)
T ss_pred ceeecCCcEEEEEEEeecCC--------ccCCHHHHHHHHHhhccCCceE
Confidence 45666677777776665554 7899999999999999999995
Done!