Query 025784
Match_columns 248
No_of_seqs 178 out of 242
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0027 Calmodulin and related 99.8 2.6E-20 5.6E-25 154.2 12.0 145 9-196 2-149 (151)
2 COG5126 FRQ1 Ca2+-binding prot 99.8 3.1E-19 6.8E-24 150.7 12.5 141 7-195 12-155 (160)
3 PTZ00183 centrin; Provisional 99.7 5.3E-16 1.1E-20 126.1 13.3 141 9-196 11-154 (158)
4 PTZ00184 calmodulin; Provision 99.7 8.3E-16 1.8E-20 123.1 13.5 139 10-195 6-147 (149)
5 KOG0031 Myosin regulatory ligh 99.6 7.1E-15 1.5E-19 123.1 11.7 139 6-195 23-164 (171)
6 KOG0028 Ca2+-binding protein ( 99.5 5.9E-14 1.3E-18 118.1 11.7 137 13-196 31-170 (172)
7 KOG0034 Ca2+/calmodulin-depend 99.5 5.1E-13 1.1E-17 115.7 12.2 142 7-196 25-175 (187)
8 KOG0037 Ca2+-binding protein, 99.4 3.1E-12 6.8E-17 112.4 12.7 129 16-197 58-189 (221)
9 KOG0044 Ca2+ sensor (EF-Hand s 99.2 2.9E-10 6.3E-15 99.0 13.4 138 19-196 30-175 (193)
10 PF13499 EF-hand_7: EF-hand do 99.2 2.1E-11 4.6E-16 86.7 4.2 65 128-194 2-66 (66)
11 cd05022 S-100A13 S-100A13: S-1 99.1 2.2E-10 4.7E-15 88.2 8.8 73 127-204 9-83 (89)
12 KOG0036 Predicted mitochondria 99.1 2.7E-10 5.9E-15 108.1 10.1 143 19-214 18-168 (463)
13 cd05026 S-100Z S-100Z: S-100Z 99.1 3E-10 6.4E-15 87.5 8.3 72 127-200 11-85 (93)
14 cd05025 S-100A1 S-100A1: S-100 99.0 1.3E-09 2.7E-14 83.3 8.3 71 127-199 10-83 (92)
15 cd05027 S-100B S-100B: S-100B 99.0 2.2E-09 4.7E-14 82.2 8.3 68 127-200 9-83 (88)
16 cd05031 S-100A10_like S-100A10 99.0 1.7E-09 3.8E-14 82.9 7.3 72 126-199 8-82 (94)
17 cd00052 EH Eps15 homology doma 99.0 4E-09 8.7E-14 74.3 8.2 64 129-200 2-65 (67)
18 KOG0030 Myosin essential light 99.0 5.1E-09 1.1E-13 86.8 9.7 140 12-194 8-149 (152)
19 cd05023 S-100A11 S-100A11: S-1 98.9 5.5E-09 1.2E-13 80.2 8.2 72 127-199 10-83 (89)
20 cd05029 S-100A6 S-100A6: S-100 98.9 1.1E-08 2.4E-13 78.3 8.0 72 127-201 11-84 (88)
21 KOG4223 Reticulocalbin, calume 98.8 1.1E-08 2.4E-13 94.6 8.6 127 19-191 167-300 (325)
22 KOG0027 Calmodulin and related 98.8 5E-08 1.1E-12 80.7 11.0 110 55-199 7-116 (151)
23 smart00027 EH Eps15 homology d 98.8 2.7E-08 5.8E-13 76.5 8.1 67 126-200 10-76 (96)
24 cd00213 S-100 S-100: S-100 dom 98.8 4.2E-08 9.2E-13 73.8 8.6 70 127-198 9-81 (88)
25 PTZ00183 centrin; Provisional 98.7 1.2E-07 2.7E-12 76.8 11.3 102 56-196 17-118 (158)
26 KOG4223 Reticulocalbin, calume 98.7 5.3E-08 1.2E-12 90.1 7.9 148 13-196 75-228 (325)
27 cd00252 SPARC_EC SPARC_EC; ext 98.6 1.3E-07 2.8E-12 76.2 7.8 62 124-195 46-107 (116)
28 PTZ00184 calmodulin; Provision 98.6 3.6E-07 7.9E-12 72.9 10.3 102 57-197 12-113 (149)
29 PLN02964 phosphatidylserine de 98.6 1.3E-07 2.7E-12 95.3 9.3 100 9-154 137-243 (644)
30 PF13833 EF-hand_8: EF-hand do 98.6 8.7E-08 1.9E-12 65.7 5.7 53 139-196 1-53 (54)
31 KOG0377 Protein serine/threoni 98.6 3E-07 6.4E-12 88.5 10.3 148 19-199 468-618 (631)
32 cd05026 S-100Z S-100Z: S-100Z 98.6 1.2E-07 2.7E-12 72.9 6.1 70 13-91 8-82 (93)
33 cd00051 EFh EF-hand, calcium b 98.6 2.3E-07 4.9E-12 62.2 6.7 61 128-194 2-62 (63)
34 KOG0044 Ca2+ sensor (EF-Hand s 98.6 3.6E-07 7.7E-12 79.7 9.0 105 19-154 68-175 (193)
35 PF13499 EF-hand_7: EF-hand do 98.5 9.7E-08 2.1E-12 67.7 4.4 61 17-87 2-65 (66)
36 cd05030 calgranulins Calgranul 98.5 3.2E-07 7E-12 69.9 7.3 71 127-199 9-82 (88)
37 cd05022 S-100A13 S-100A13: S-1 98.5 2.4E-07 5.1E-12 71.3 5.9 71 13-96 6-81 (89)
38 cd05029 S-100A6 S-100A6: S-100 98.5 4.2E-07 9.2E-12 69.5 6.6 72 13-94 8-83 (88)
39 COG5126 FRQ1 Ca2+-binding prot 98.4 2.6E-07 5.6E-12 78.4 4.9 64 11-88 88-154 (160)
40 cd05024 S-100A10 S-100A10: A s 98.4 1.4E-06 3.1E-11 67.5 8.6 71 127-201 9-81 (91)
41 smart00027 EH Eps15 homology d 98.4 6.9E-07 1.5E-11 68.6 6.8 66 9-90 4-72 (96)
42 cd05027 S-100B S-100B: S-100B 98.4 6.2E-07 1.3E-11 68.6 6.3 73 13-93 6-82 (88)
43 cd05025 S-100A1 S-100A1: S-100 98.4 1E-06 2.3E-11 67.1 6.3 69 14-92 8-82 (92)
44 cd00052 EH Eps15 homology doma 98.4 1.4E-06 3.1E-11 61.1 6.4 60 19-94 3-65 (67)
45 cd05023 S-100A11 S-100A11: S-1 98.3 1.8E-06 3.8E-11 66.3 6.5 73 12-91 6-81 (89)
46 KOG0038 Ca2+-binding kinase in 98.2 3.2E-06 6.8E-11 71.1 7.0 104 58-195 73-176 (189)
47 cd05031 S-100A10_like S-100A10 98.2 3.3E-06 7.1E-11 64.7 5.9 68 14-91 7-80 (94)
48 KOG0028 Ca2+-binding protein ( 98.2 1.2E-05 2.7E-10 68.2 9.8 103 56-197 33-135 (172)
49 PF13833 EF-hand_8: EF-hand do 98.2 5E-06 1.1E-10 56.9 6.1 49 29-90 3-53 (54)
50 KOG0041 Predicted Ca2+-binding 98.1 1.4E-05 3.1E-10 70.2 8.8 66 127-198 100-165 (244)
51 cd05030 calgranulins Calgranul 98.1 5E-06 1.1E-10 63.3 5.1 68 13-92 6-81 (88)
52 PLN02964 phosphatidylserine de 98.1 3E-05 6.4E-10 78.5 11.9 137 29-211 119-257 (644)
53 PF00036 EF-hand_1: EF hand; 98.0 4.5E-06 9.8E-11 51.4 2.9 27 170-196 2-28 (29)
54 PF00036 EF-hand_1: EF hand; 98.0 7.8E-06 1.7E-10 50.3 3.2 28 128-155 2-29 (29)
55 KOG0037 Ca2+-binding protein, 98.0 1E-05 2.2E-10 71.6 5.0 82 15-144 124-208 (221)
56 PF14658 EF-hand_9: EF-hand do 98.0 2.4E-05 5.2E-10 57.3 6.1 62 130-196 2-64 (66)
57 cd00252 SPARC_EC SPARC_EC; ext 97.9 1.3E-05 2.8E-10 64.6 4.9 59 13-88 46-106 (116)
58 cd00213 S-100 S-100: S-100 dom 97.9 3.3E-05 7E-10 58.0 6.5 70 12-91 5-80 (88)
59 KOG2562 Protein phosphatase 2 97.9 6.6E-05 1.4E-09 72.7 9.3 146 19-206 282-432 (493)
60 cd00051 EFh EF-hand, calcium b 97.9 2.7E-05 5.8E-10 51.9 4.8 56 18-87 3-61 (63)
61 KOG2643 Ca2+ binding protein, 97.9 0.00013 2.8E-09 70.4 11.0 139 16-195 234-383 (489)
62 PRK12309 transaldolase/EF-hand 97.9 8E-05 1.7E-09 71.4 9.6 61 119-198 327-387 (391)
63 KOG0034 Ca2+/calmodulin-depend 97.8 0.00013 2.7E-09 63.5 8.5 102 19-155 70-176 (187)
64 PF13405 EF-hand_6: EF-hand do 97.8 2.9E-05 6.3E-10 47.8 3.1 29 128-156 2-31 (31)
65 cd05024 S-100A10 S-100A10: A s 97.7 8.7E-05 1.9E-09 57.6 6.1 73 13-93 6-79 (91)
66 KOG0036 Predicted mitochondria 97.7 0.00022 4.7E-09 68.5 9.1 77 125-206 13-89 (463)
67 PF12763 EF-hand_4: Cytoskelet 97.6 0.00027 5.8E-09 55.9 7.4 74 127-209 11-84 (104)
68 PF13202 EF-hand_5: EF hand; P 97.5 9.5E-05 2.1E-09 43.9 2.9 25 128-152 1-25 (25)
69 PF12763 EF-hand_4: Cytoskelet 97.3 0.00065 1.4E-08 53.8 6.5 76 10-101 5-82 (104)
70 PF14658 EF-hand_9: EF-hand do 97.3 0.00066 1.4E-08 49.7 6.0 59 20-90 3-64 (66)
71 PF13202 EF-hand_5: EF hand; P 97.3 0.00021 4.4E-09 42.4 2.7 25 170-194 1-25 (25)
72 KOG4251 Calcium binding protei 97.3 0.0002 4.4E-09 64.9 3.8 151 15-193 101-261 (362)
73 PF10591 SPARC_Ca_bdg: Secrete 97.3 0.00036 7.9E-09 55.8 4.9 102 80-192 8-112 (113)
74 KOG2643 Ca2+ binding protein, 97.2 0.0017 3.6E-08 62.9 8.8 137 23-195 208-345 (489)
75 KOG4065 Uncharacterized conser 97.2 0.00063 1.4E-08 55.3 4.9 66 128-193 69-142 (144)
76 KOG0031 Myosin regulatory ligh 97.1 0.0018 3.9E-08 54.9 7.4 61 127-197 33-93 (171)
77 KOG0751 Mitochondrial aspartat 96.9 0.011 2.4E-07 58.4 11.5 147 11-202 32-181 (694)
78 KOG0030 Myosin essential light 96.9 0.0015 3.4E-08 54.5 4.7 59 13-86 86-147 (152)
79 KOG0041 Predicted Ca2+-binding 96.8 0.0014 2.9E-08 58.0 4.4 65 12-90 96-163 (244)
80 PF13405 EF-hand_6: EF-hand do 96.8 0.0013 2.8E-08 40.4 3.0 27 170-196 2-28 (31)
81 KOG0377 Protein serine/threoni 96.8 0.0017 3.7E-08 63.2 4.9 66 17-91 549-616 (631)
82 KOG0046 Ca2+-binding actin-bun 96.8 0.0034 7.3E-08 62.1 7.0 70 127-200 20-89 (627)
83 KOG0040 Ca2+-binding actin-bun 96.7 0.0062 1.4E-07 66.2 8.9 109 10-152 2248-2359(2399)
84 PF14788 EF-hand_10: EF hand; 96.6 0.0066 1.4E-07 42.3 5.2 50 142-197 1-50 (51)
85 PF10591 SPARC_Ca_bdg: Secrete 96.3 0.0014 3E-08 52.5 0.7 54 17-85 56-111 (113)
86 KOG1029 Endocytic adaptor prot 96.1 0.076 1.6E-06 54.9 12.2 155 20-198 21-259 (1118)
87 PRK12309 transaldolase/EF-hand 96.1 0.012 2.7E-07 56.5 6.2 59 49-154 327-385 (391)
88 KOG0046 Ca2+-binding actin-bun 96.1 0.01 2.2E-07 58.8 5.6 76 9-95 13-90 (627)
89 smart00054 EFh EF-hand, calciu 96.0 0.0085 1.8E-07 33.6 3.0 27 170-196 2-28 (29)
90 smart00054 EFh EF-hand, calciu 95.4 0.022 4.8E-07 31.7 3.2 27 128-154 2-28 (29)
91 KOG4065 Uncharacterized conser 95.2 0.05 1.1E-06 44.4 5.7 61 19-86 71-141 (144)
92 KOG0040 Ca2+-binding actin-bun 95.2 0.047 1E-06 59.8 7.0 88 128-231 2255-2343(2399)
93 KOG4666 Predicted phosphate ac 95.1 0.048 1E-06 51.5 5.8 101 56-196 259-359 (412)
94 KOG0751 Mitochondrial aspartat 94.8 0.27 5.9E-06 48.8 10.5 112 23-157 83-210 (694)
95 KOG0038 Ca2+-binding kinase in 94.1 0.13 2.7E-06 43.8 5.7 61 14-87 105-174 (189)
96 KOG2562 Protein phosphatase 2 93.9 0.25 5.4E-06 48.5 8.0 140 19-191 143-301 (493)
97 PF09279 EF-hand_like: Phospho 93.4 0.16 3.5E-06 37.5 4.6 63 128-195 2-68 (83)
98 KOG4251 Calcium binding protei 92.0 0.45 9.7E-06 43.7 6.3 128 29-192 214-341 (362)
99 KOG1707 Predicted Ras related/ 90.8 0.87 1.9E-05 46.1 7.6 141 12-195 192-342 (625)
100 KOG0042 Glycerol-3-phosphate d 89.8 0.8 1.7E-05 46.3 6.4 67 127-199 594-660 (680)
101 PF14788 EF-hand_10: EF hand; 89.4 1.3 2.8E-05 30.9 5.4 48 30-90 1-49 (51)
102 KOG4578 Uncharacterized conser 88.9 0.2 4.3E-06 47.5 1.3 103 76-195 294-397 (421)
103 KOG1029 Endocytic adaptor prot 86.3 0.94 2E-05 47.3 4.5 69 19-105 199-270 (1118)
104 KOG3555 Ca2+-binding proteogly 84.6 0.98 2.1E-05 43.1 3.4 59 127-195 251-309 (434)
105 KOG4666 Predicted phosphate ac 84.2 3 6.4E-05 39.7 6.4 96 17-154 261-359 (412)
106 PRK09430 djlA Dna-J like membr 84.2 8.9 0.00019 35.0 9.4 108 25-176 67-174 (267)
107 KOG0998 Synaptic vesicle prote 81.4 1.8 3.9E-05 45.8 4.3 158 17-202 13-196 (847)
108 cd07313 terB_like_2 tellurium 80.9 7.8 0.00017 29.4 6.7 88 27-155 13-100 (104)
109 KOG3866 DNA-binding protein of 80.5 1.5 3.3E-05 41.4 3.0 64 130-194 248-322 (442)
110 PF05099 TerB: Tellurite resis 79.8 1.7 3.7E-05 34.7 2.8 98 26-164 36-133 (140)
111 KOG0998 Synaptic vesicle prote 79.0 2.5 5.4E-05 44.7 4.4 172 12-209 126-357 (847)
112 KOG3555 Ca2+-binding proteogly 78.0 2.2 4.7E-05 40.9 3.2 53 17-86 252-306 (434)
113 PF05517 p25-alpha: p25-alpha 77.4 12 0.00025 31.4 7.2 67 130-199 6-72 (154)
114 PF05042 Caleosin: Caleosin re 75.6 10 0.00022 32.9 6.4 70 127-196 8-124 (174)
115 cd07316 terB_like_DjlA N-termi 75.1 21 0.00045 26.9 7.6 90 26-155 12-101 (106)
116 KOG1955 Ral-GTPase effector RA 74.7 5.6 0.00012 39.9 5.2 61 127-195 232-292 (737)
117 KOG4578 Uncharacterized conser 74.3 2.2 4.8E-05 40.6 2.2 63 59-154 336-398 (421)
118 KOG0169 Phosphoinositide-speci 74.2 6.2 0.00013 41.1 5.5 66 125-196 135-200 (746)
119 PF14425 Imm3: Immunity protei 73.9 18 0.00039 29.4 7.1 93 115-210 18-111 (117)
120 KOG0169 Phosphoinositide-speci 73.3 17 0.00036 38.0 8.3 127 19-195 140-273 (746)
121 PF05042 Caleosin: Caleosin re 72.4 34 0.00074 29.7 8.9 63 127-191 97-161 (174)
122 cd07313 terB_like_2 tellurium 70.7 6.3 0.00014 29.9 3.7 54 140-197 13-66 (104)
123 PF14513 DAG_kinase_N: Diacylg 68.7 3.7 8E-05 34.2 2.1 76 29-139 6-82 (138)
124 COG4604 CeuD ABC-type enteroch 68.1 19 0.00042 32.5 6.6 25 194-218 174-198 (252)
125 KOG2243 Ca2+ release channel ( 66.0 11 0.00024 42.3 5.4 87 130-229 4061-4151(5019)
126 KOG0035 Ca2+-binding actin-bun 65.7 9 0.00019 40.7 4.7 83 126-209 747-839 (890)
127 PF08726 EFhand_Ca_insen: Ca2+ 65.4 5.4 0.00012 29.4 2.3 26 127-153 7-32 (69)
128 PF08726 EFhand_Ca_insen: Ca2+ 57.7 1.9 4.1E-05 31.8 -1.4 57 15-85 6-64 (69)
129 KOG1955 Ral-GTPase effector RA 56.7 23 0.0005 35.7 5.5 74 15-118 231-307 (737)
130 PF09069 EF-hand_3: EF-hand; 55.7 84 0.0018 24.3 7.4 66 127-195 4-74 (90)
131 KOG0042 Glycerol-3-phosphate d 55.2 12 0.00026 38.1 3.3 67 11-91 589-658 (680)
132 PF09068 EF-hand_2: EF hand; 54.1 1.1E+02 0.0024 24.8 8.3 86 55-154 40-125 (127)
133 cd07176 terB tellurite resista 52.8 35 0.00077 25.6 5.0 32 126-160 79-110 (111)
134 cd07311 terB_like_1 tellurium 51.3 1.4E+02 0.0031 24.9 8.9 99 25-176 35-133 (150)
135 PLN02952 phosphoinositide phos 49.2 1.1E+02 0.0023 31.5 9.0 64 127-195 39-109 (599)
136 PF05517 p25-alpha: p25-alpha 44.7 44 0.00095 27.9 4.7 52 29-90 17-69 (154)
137 PRK12792 flhA flagellar biosyn 44.6 2.7E+02 0.006 29.2 11.2 57 167-230 600-664 (694)
138 cd08030 LA_like_plant La-motif 44.6 46 0.001 25.7 4.4 47 176-226 27-90 (90)
139 COG4103 Uncharacterized protei 43.5 35 0.00076 28.8 3.9 58 21-90 36-94 (148)
140 KOG1707 Predicted Ras related/ 41.1 30 0.00064 35.4 3.6 31 125-155 314-344 (625)
141 TIGR01398 FlhA flagellar biosy 40.2 4.6E+02 0.01 27.5 12.5 57 167-230 587-649 (678)
142 COG4103 Uncharacterized protei 39.7 61 0.0013 27.4 4.7 68 120-195 26-93 (148)
143 PRK12720 secretion system appa 38.9 3.4E+02 0.0074 28.4 10.9 56 167-231 582-641 (675)
144 PF09312 SurA_N: SurA N-termin 38.4 1.4E+02 0.003 23.4 6.5 103 76-199 10-113 (118)
145 PF01023 S_100: S-100/ICaBP ty 37.6 14 0.00031 24.6 0.6 28 14-41 5-35 (44)
146 PRK00117 recX recombination re 37.5 1.8E+02 0.0039 23.7 7.3 37 31-84 26-63 (157)
147 PRK10598 lipoprotein; Provisio 37.1 50 0.0011 28.9 4.0 39 190-228 132-170 (186)
148 PF11061 DUF2862: Protein of u 36.7 29 0.00062 25.3 2.1 34 196-229 15-48 (64)
149 PF09851 SHOCT: Short C-termin 36.3 40 0.00087 20.6 2.4 17 182-198 14-30 (31)
150 PF09069 EF-hand_3: EF-hand; 36.1 77 0.0017 24.5 4.5 40 168-209 3-42 (90)
151 PF12174 RST: RCD1-SRO-TAF4 (R 35.5 1.1E+02 0.0024 22.4 5.1 51 140-199 6-56 (70)
152 PF14513 DAG_kinase_N: Diacylg 35.1 25 0.00053 29.3 1.7 51 141-199 6-63 (138)
153 TIGR02553 SipD_IpaD_SspD type 35.1 4E+02 0.0086 25.2 11.7 102 80-194 131-256 (308)
154 PRK09430 djlA Dna-J like membr 34.5 1.1E+02 0.0023 28.0 5.9 51 140-195 69-119 (267)
155 PF12174 RST: RCD1-SRO-TAF4 (R 32.4 99 0.0021 22.7 4.4 34 53-92 22-55 (70)
156 cd08029 LA_like_fungal La-moti 32.4 53 0.0011 24.5 3.0 46 176-226 26-76 (76)
157 KOG0035 Ca2+-binding actin-bun 32.3 86 0.0019 33.7 5.5 97 13-150 745-848 (890)
158 cd07176 terB tellurite resista 31.9 56 0.0012 24.5 3.2 57 140-198 16-72 (111)
159 PRK11409 antitoxin YefM; Provi 31.3 1.2E+02 0.0026 22.7 4.8 52 78-133 3-54 (83)
160 PF09987 DUF2226: Uncharacteri 30.7 2.7E+02 0.0059 26.1 8.0 86 127-221 163-252 (297)
161 cd08032 LARP_7 La RNA-binding 30.5 64 0.0014 24.5 3.2 49 174-226 29-82 (82)
162 TIGR01399 hrcV type III secret 30.5 6.6E+02 0.014 26.4 12.7 57 167-230 586-648 (677)
163 PF05099 TerB: Tellurite resis 30.1 18 0.00039 28.7 0.1 52 140-195 37-88 (140)
164 KOG1954 Endocytosis/signaling 29.9 71 0.0015 31.5 4.1 50 19-84 448-499 (532)
165 KOG4004 Matricellular protein 29.5 26 0.00056 31.4 1.0 51 132-190 193-244 (259)
166 smart00513 SAP Putative DNA-bi 29.0 1.4E+02 0.0031 18.3 4.1 24 142-169 3-26 (35)
167 PF02037 SAP: SAP domain; Int 28.7 1.1E+02 0.0025 19.0 3.7 24 142-169 3-26 (35)
168 PF13362 Toprim_3: Toprim doma 28.5 78 0.0017 23.5 3.4 82 93-179 10-95 (96)
169 cd06404 PB1_aPKC PB1 domain is 28.1 1.2E+02 0.0026 23.2 4.3 58 76-142 17-75 (83)
170 PF11116 DUF2624: Protein of u 27.1 2.9E+02 0.0063 21.2 7.5 49 30-90 14-62 (85)
171 KOG4347 GTPase-activating prot 26.9 1.1E+02 0.0023 31.9 4.9 58 126-190 555-612 (671)
172 cd03211 GST_C_Metaxin2 GST_C f 26.5 1.5E+02 0.0032 23.5 4.9 41 171-211 39-79 (126)
173 PLN02230 phosphoinositide phos 25.8 2.6E+02 0.0056 28.8 7.5 65 127-195 30-101 (598)
174 TIGR01203 HGPRTase hypoxanthin 25.5 2.3E+02 0.0049 23.7 6.0 48 79-138 3-51 (166)
175 cd07292 PX_SNX6 The phosphoino 25.4 2.2E+02 0.0047 24.0 5.7 52 161-213 62-130 (141)
176 cd08033 LARP_6 La RNA-binding 25.4 1.4E+02 0.0031 22.3 4.2 48 175-226 25-77 (77)
177 KOG2243 Ca2+ release channel ( 25.1 1.1E+02 0.0024 35.2 4.8 58 19-90 4061-4120(5019)
178 COG1658 Small primase-like pro 25.0 1.1E+02 0.0025 25.1 3.9 49 185-241 40-94 (127)
179 cd07316 terB_like_DjlA N-termi 24.9 1.9E+02 0.0042 21.4 5.1 11 140-150 13-23 (106)
180 PRK06464 phosphoenolpyruvate s 24.8 3E+02 0.0065 29.2 8.0 76 80-155 548-658 (795)
181 PF03979 Sigma70_r1_1: Sigma-7 24.6 86 0.0019 23.2 3.0 31 139-177 18-48 (82)
182 PLN02952 phosphoinositide phos 24.4 2E+02 0.0043 29.6 6.3 53 139-196 13-65 (599)
183 KOG3449 60S acidic ribosomal p 24.1 1.4E+02 0.0031 24.1 4.2 63 127-200 2-64 (112)
184 PRK14135 recX recombination re 23.7 5.1E+02 0.011 22.9 9.6 28 143-178 123-150 (263)
185 PLN02222 phosphoinositide phos 23.0 2.7E+02 0.0058 28.6 6.9 64 127-196 26-90 (581)
186 PF09279 EF-hand_like: Phospho 22.9 1.1E+02 0.0025 22.0 3.3 25 170-195 2-26 (83)
187 PF08976 DUF1880: Domain of un 22.4 75 0.0016 25.9 2.4 31 53-89 4-34 (118)
188 KOG1265 Phospholipase C [Lipid 22.3 1.1E+03 0.023 26.1 11.5 68 127-194 222-297 (1189)
189 KOG1954 Endocytosis/signaling 22.3 1.5E+02 0.0031 29.4 4.6 56 127-191 445-500 (532)
190 PRK06012 flhA flagellar biosyn 21.7 9.5E+02 0.021 25.2 12.1 79 145-230 575-665 (697)
191 PF12910 RelB_N: Antitoxin of 21.6 1.1E+02 0.0024 20.3 2.8 34 78-113 3-36 (46)
192 PF00690 Cation_ATPase_N: Cati 21.6 2.8E+02 0.006 19.3 5.0 49 128-177 6-54 (69)
193 TIGR02675 tape_meas_nterm tape 21.5 2.4E+02 0.0052 20.6 4.8 15 140-154 28-42 (75)
194 PRK15330 cell invasion protein 21.2 7.4E+02 0.016 23.8 10.8 106 81-195 160-292 (343)
195 smart00222 Sec7 Sec7 domain. D 20.9 5.3E+02 0.011 21.9 9.1 46 108-155 47-93 (187)
196 PF09824 ArsR: ArsR transcript 20.8 2E+02 0.0044 24.6 4.8 26 186-211 102-137 (160)
197 PF07273 DUF1439: Protein of u 20.6 1.4E+02 0.003 24.7 3.7 30 188-217 104-133 (152)
198 PF11848 DUF3368: Domain of un 20.5 1.3E+02 0.0028 20.1 2.9 31 29-65 16-47 (48)
199 PF02604 PhdYeFM_antitox: Anti 20.2 99 0.0021 21.8 2.5 29 184-214 3-31 (75)
200 PF06226 DUF1007: Protein of u 20.0 1.2E+02 0.0026 26.5 3.4 31 173-203 55-85 (212)
No 1
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-20 Score=154.19 Aligned_cols=145 Identities=13% Similarity=0.248 Sum_probs=119.8
Q ss_pred echhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHH
Q 025784 9 IDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (248)
Q Consensus 9 ldg~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (248)
+..+++.++.++|+ +| |++ |+||..||.. +.. +|...++.++..+++++|.+ ++|.|++.||.
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~-G~i~~~el~~~lr~-------lg~~~t~~el~~~~~~~D~d------g~g~I~~~eF~ 67 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGD-GKISVEELGAVLRS-------LGQNPTEEELRDLIKEIDLD------GDGTIDFEEFL 67 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHH-------cCCCCCHHHHHHHHHHhCCC------CCCeEcHHHHH
Confidence 35678999999999 99 999 9999999999 544 45567899999999999999 79999999998
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCC
Q 025784 86 KLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFS 165 (248)
Q Consensus 86 ~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~ 165 (248)
..|..........- .. ...+..+|+.||.|++|+||.+||+.+|.++|-..
T Consensus 68 ~l~~~~~~~~~~~~-------------------~~----~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~------ 118 (151)
T KOG0027|consen 68 DLMEKLGEEKTDEE-------------------AS----SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL------ 118 (151)
T ss_pred HHHHhhhccccccc-------------------cc----HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC------
Confidence 87776311110000 11 22699999999999999999999999999986432
Q ss_pred ChHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 166 EFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 166 ~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
..+.++.+++++|.|+||.|+|+||+++|..
T Consensus 119 ~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 119 TDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 2678999999999999999999999999863
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.81 E-value=3.1e-19 Score=150.69 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=120.9
Q ss_pred EEechhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHH
Q 025784 7 TVIDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDH 83 (248)
Q Consensus 7 ~vldg~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~E 83 (248)
+.++-++|+.++++|+ +| |+| |.|++.||.. ++. +|.+.|.+++..+++.+|.+ ++.|+|.|
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~-------lg~~~s~~ei~~l~~~~d~~-------~~~idf~~ 76 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSD-GLIDRNELGKILRS-------LGFNPSEAEINKLFEEIDAG-------NETVDFPE 76 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHH-------cCCCCcHHHHHHHHHhccCC-------CCccCHHH
Confidence 4678899999999999 99 999 9999999999 543 67789999999999999984 89999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCC
Q 025784 84 ASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPP 163 (248)
Q Consensus 84 F~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp 163 (248)
|...|... +++ .-..+ .+..+|+.||.|++|+||..||+.+|..+|-. +
T Consensus 77 Fl~~ms~~-------~~~---------------~~~~E-----el~~aF~~fD~d~dG~Is~~eL~~vl~~lge~--~-- 125 (160)
T COG5126 77 FLTVMSVK-------LKR---------------GDKEE-----ELREAFKLFDKDHDGYISIGELRRVLKSLGER--L-- 125 (160)
T ss_pred HHHHHHHH-------hcc---------------CCcHH-----HHHHHHHHhCCCCCceecHHHHHHHHHhhccc--C--
Confidence 97777663 222 11122 59999999999999999999999999988754 3
Q ss_pred CCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 164 FSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 164 ~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
+.+.++.+|+++|.|+||.|+|++|++.+.
T Consensus 126 --~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 126 --SDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred --CHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 377899999999999999999999999875
No 3
>PTZ00183 centrin; Provisional
Probab=99.69 E-value=5.3e-16 Score=126.13 Aligned_cols=141 Identities=11% Similarity=0.246 Sum_probs=115.0
Q ss_pred echhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHH
Q 025784 9 IDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (248)
Q Consensus 9 ldg~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (248)
+...+++.+...|. +| +++ |+||..|+.. +..+ |..++...+..+++.+|.+ ++|.|+|.||.
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~-------g~~~~~~~~~~l~~~~d~~------~~g~i~~~eF~ 76 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGS-GTIDPKELKVAMRSL-------GFEPKKEEIKQMIADVDKD------GSGKIDFEEFL 76 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHh-------CCCCCHHHHHHHHHHhCCC------CCCcEeHHHHH
Confidence 45678889999999 99 999 9999999999 6543 4557788899999999999 79999999996
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCC
Q 025784 86 KLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFS 165 (248)
Q Consensus 86 ~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~ 165 (248)
..+... ... ......+..+|+.+|.+++|.|+..|++.++..++. ++
T Consensus 77 ~~~~~~-------~~~--------------------~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~l---- 123 (158)
T PTZ00183 77 DIMTKK-------LGE--------------------RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE--TI---- 123 (158)
T ss_pred HHHHHH-------hcC--------------------CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CC----
Confidence 654431 111 012235899999999999999999999999977642 22
Q ss_pred ChHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 166 EFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 166 ~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
+...+..+|..+|.|++|.|++++|+..|+.
T Consensus 124 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 124 TDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3678999999999999999999999988865
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.68 E-value=8.3e-16 Score=123.12 Aligned_cols=139 Identities=13% Similarity=0.280 Sum_probs=112.1
Q ss_pred chhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHH
Q 025784 10 DGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (248)
Q Consensus 10 dg~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (248)
.-++++.+...|. +| +++ |+||.+|+.. +..+ |.+.+...+..+++.+|.+ ++|.|+|+||..
T Consensus 6 ~~~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~------~~g~i~~~ef~~ 71 (149)
T PTZ00184 6 TEEQIAEFKEAFSLFDKDGD-GTITTKELGTVMRSL-------GQNPTEAELQDMINEVDAD------GNGTIDFPEFLT 71 (149)
T ss_pred CHHHHHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHh-------CCCCCHHHHHHHHHhcCcC------CCCcCcHHHHHH
Confidence 3467888999999 99 999 9999999999 6443 4456677899999999999 799999999976
Q ss_pred HHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCC
Q 025784 87 LASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSE 166 (248)
Q Consensus 87 ~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~ 166 (248)
.+... +.. ......+..+|+.+|.+++|+|+.++++.++...+. ++ +
T Consensus 72 ~l~~~-------~~~--------------------~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~----~ 118 (149)
T PTZ00184 72 LMARK-------MKD--------------------TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE--KL----T 118 (149)
T ss_pred HHHHh-------ccC--------------------CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC--CC----C
Confidence 55542 110 012235899999999999999999999999977542 12 3
Q ss_pred hHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 167 FPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 167 ~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
...+..++..+|.+++|.|+++||..+|.
T Consensus 119 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 119 DEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 66789999999999999999999998774
No 5
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.61 E-value=7.1e-15 Score=123.09 Aligned_cols=139 Identities=15% Similarity=0.267 Sum_probs=119.5
Q ss_pred eEEechhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHH
Q 025784 6 FTVIDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRD 82 (248)
Q Consensus 6 ~~vldg~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~ 82 (248)
...+|-++|++|++.|. +| |+| |.|.++.|++ ++.+| -..++.+++.+|++ ..|+|+|+
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlG-------k~~~d~elDaM~~E----------a~gPINft 84 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLG-------KIASDEELDAMMKE----------APGPINFT 84 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcC-------CCCCHHHHHHHHHh----------CCCCeeHH
Confidence 46789999999999999 99 999 9999999999 88754 45889999999998 68999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCC
Q 025784 83 HASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVP 162 (248)
Q Consensus 83 EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glp 162 (248)
-|+. .+...|+.. +| +..+.++|+.||.+++|+|..+.||+.|...|..+
T Consensus 85 ~FLT-------mfGekL~gt-----------------dp---e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~--- 134 (171)
T KOG0031|consen 85 VFLT-------MFGEKLNGT-----------------DP---EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF--- 134 (171)
T ss_pred HHHH-------HHHHHhcCC-----------------CH---HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccC---
Confidence 9955 444456552 34 34799999999999999999999999998876432
Q ss_pred CCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 163 PFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 163 p~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
+++.+++++..+-.|..|.++|.+|+.+++
T Consensus 135 ---~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 135 ---TDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred ---CHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 477899999999999999999999999886
No 6
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.9e-14 Score=118.13 Aligned_cols=137 Identities=10% Similarity=0.221 Sum_probs=113.2
Q ss_pred hHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHH
Q 025784 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (248)
Q Consensus 13 ~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (248)
+-+.....|. +| +++ |+|.+.||.- +..+ |...+..++..++.++|.+ +.|.|++++|...+.
T Consensus 31 q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmral-------GFE~~k~ei~kll~d~dk~------~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMA-GKIDVEELKVAMRAL-------GFEPKKEEILKLLADVDKE------GSGKITFEDFRRVMT 96 (172)
T ss_pred HHhhHHHHHHhhccCCC-CcccHHHHHHHHHHc-------CCCcchHHHHHHHHhhhhc------cCceechHHHHHHHH
Confidence 4456668899 99 999 9999999977 6554 4557888999999999999 699999999977665
Q ss_pred HHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHH
Q 025784 90 DYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQ 169 (248)
Q Consensus 90 ~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~ 169 (248)
..+. . + ...+ .+..+|+.+|-|++|+||..+|+.+...||..+ +++.
T Consensus 97 ~k~~-----e-~----------------dt~e-----Ei~~afrl~D~D~~Gkis~~~lkrvakeLgenl------tD~E 143 (172)
T KOG0028|consen 97 VKLG-----E-R----------------DTKE-----EIKKAFRLFDDDKTGKISQRNLKRVAKELGENL------TDEE 143 (172)
T ss_pred HHHh-----c-c----------------CcHH-----HHHHHHHcccccCCCCcCHHHHHHHHHHhCccc------cHHH
Confidence 5321 1 1 1123 499999999999999999999999888876432 4778
Q ss_pred HHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 170 LNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
+.+|+.++|.|+||.|+++||...|++
T Consensus 144 l~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 144 LMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHhcccccccccHHHHHHHHhc
Confidence 999999999999999999999999885
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.47 E-value=5.1e-13 Score=115.70 Aligned_cols=142 Identities=15% Similarity=0.231 Sum_probs=109.3
Q ss_pred EEechhhHhhcccccc-CC-C-CCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCccccccc-ccHH
Q 025784 7 TVIDGTQLRSLSQPLA-LP-T-SDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKE-FDRD 82 (248)
Q Consensus 7 ~vldg~~i~~L~~~F~-lD-d-~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~-I~~~ 82 (248)
+.++-+||..|..+|. || + ++ |.+|++|++.+..... -.....|+..++.+ ++|. |++.
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~-g~lt~eef~~i~~~~~----------Np~~~rI~~~f~~~------~~~~~v~F~ 87 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGD-GYLTKEEFLSIPELAL----------NPLADRIIDRFDTD------GNGDPVDFE 87 (187)
T ss_pred cccCHHHHHHHHHHHHHhcccccc-CccCHHHHHHHHHHhc----------CcHHHHHHHHHhcc------CCCCccCHH
Confidence 4467889999999999 99 7 77 9999999999543211 22577899999988 5666 9999
Q ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhH-HHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCC
Q 025784 83 HASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFT-MLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGV 161 (248)
Q Consensus 83 EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~-~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Gl 161 (248)
+|...+.-+ .+.+.. ..+.=+|+.+|.+++|+|+++|+..++..+-.. +.
T Consensus 88 ~Fv~~ls~f----------------------------~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~-~~ 138 (187)
T KOG0034|consen 88 EFVRLLSVF----------------------------SPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE-ND 138 (187)
T ss_pred HHHHHHhhh----------------------------cCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc-CC
Confidence 997766653 111111 258899999999999999999999999887322 12
Q ss_pred CCCCChHH----HHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 162 PPFSEFPQ----LNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 162 pp~~~~~~----~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
.- +.+. .+.+|.++|.|+||.||++||+..+.+
T Consensus 139 ~~--~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 139 DM--SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred cc--hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 11 1333 667889999999999999999998875
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.41 E-value=3.1e-12 Score=112.36 Aligned_cols=129 Identities=12% Similarity=0.136 Sum_probs=109.3
Q ss_pred hcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHH
Q 025784 16 SLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYI 92 (248)
Q Consensus 16 ~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il 92 (248)
.+...|. .| |+. |.|+-+||++ |....-+ +....-+.-++.-+|.+ ..|.|++.||.++-+.|
T Consensus 58 ~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~~~------~Fs~~TcrlmI~mfd~~------~~G~i~f~EF~~Lw~~i- 123 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRS-GRILAKELQQALSNGTWS------PFSIETCRLMISMFDRD------NSGTIGFKEFKALWKYI- 123 (221)
T ss_pred HHHHHHHhhCcccc-ccccHHHHHHHhhcCCCC------CCCHHHHHHHHHHhcCC------CCCccCHHHHHHHHHHH-
Confidence 4567899 99 999 9999999999 7655443 56677899999999999 79999999997755553
Q ss_pred HHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHH
Q 025784 93 TAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLND 172 (248)
Q Consensus 93 ~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~ 172 (248)
+-+.++|+.+|+|+||+|+..||+.||..+|- -+| +..++-
T Consensus 124 ---------------------------------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy--~Ls----pq~~~~ 164 (221)
T KOG0037|consen 124 ---------------------------------NQWRNVFRTYDRDRSGTIDSSELRQALTQLGY--RLS----PQFYNL 164 (221)
T ss_pred ---------------------------------HHHHHHHHhcccCCCCcccHHHHHHHHHHcCc--CCC----HHHHHH
Confidence 23999999999999999999999999999874 354 567899
Q ss_pred HHHHhCCCCCcccCHHHHHHHHHHH
Q 025784 173 ILKKHGAEGEEELGQAQFTELLRQV 197 (248)
Q Consensus 173 i~~e~D~d~DG~Id~eEF~~lm~ki 197 (248)
+++++|.-++|.+.++.|.+..-.+
T Consensus 165 lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 165 LVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHhccccCCceeHHHHHHHHHHH
Confidence 9999998889999999999876543
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.21 E-value=2.9e-10 Score=99.01 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=100.7
Q ss_pred cccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAI 95 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~i 95 (248)
+.++ += ++.+|.++.++.+. ++.. |..+-|..-.+-+++.+|.| ++|.|++.||...++-
T Consensus 30 ~~Yr~Fk~~cP~G~~~~~~F~~i~~~~------fp~gd~~~y~~~vF~~fD~~------~dg~i~F~Efi~als~----- 92 (193)
T KOG0044|consen 30 QWYRGFKNECPSGRLTLEEFREIYASF------FPDGDASKYAELVFRTFDKN------KDGTIDFLEFICALSL----- 92 (193)
T ss_pred HHHHHhcccCCCCccCHHHHHHHHHHH------CCCCCHHHHHHHHHHHhccc------CCCCcCHHHHHHHHHH-----
Confidence 3444 44 44349999999999 7653 33456677888999999999 7999999999555544
Q ss_pred HhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccc---CCCCCCC--hHHH
Q 025784 96 ADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEF---GVPPFSE--FPQL 170 (248)
Q Consensus 96 A~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~---Glpp~~~--~~~~ 170 (248)
.++.. + +..+.-+|+.+|.||+|+||+.|+-.++..+-.-. ..|.... ....
T Consensus 93 --~~rGt---------------~------eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v 149 (193)
T KOG0044|consen 93 --TSRGT---------------L------EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERV 149 (193)
T ss_pred --HcCCc---------------H------HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHH
Confidence 23221 2 22355669999999999999999998887653222 2331111 2248
Q ss_pred HHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 171 NDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 171 ~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
+.||+++|.|+||.|+++||..-.+.
T Consensus 150 ~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 150 DKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 89999999999999999999988773
No 10
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.18 E-value=2.1e-11 Score=86.71 Aligned_cols=65 Identities=18% Similarity=0.473 Sum_probs=53.7
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHH
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELL 194 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm 194 (248)
+..+|+.+|+|++|+||.+||+.++..++... ++......++.+|+.+|.|+||.|+++||..+|
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDM--SDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS--THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999998876432 211123357788999999999999999999876
No 11
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.15 E-value=2.2e-10 Score=88.18 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=62.2
Q ss_pred HHHHHHhhhCC-CCCCcccHHHHHHHHhc-cCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHH
Q 025784 127 LAENLFADLDT-EDEGKVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDA 204 (248)
Q Consensus 127 ~~~~~F~~lD~-D~dG~LS~~EL~~al~~-lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A~~ 204 (248)
.+..+|+.||. +++|+|+.+||+.+|.+ +|.. + ++...++++++++|.|+||.|+|+||..+|..+..+....
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~--l---s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~~ 83 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHL--L---KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKGE 83 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh--c---cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 48899999999 99999999999999988 6421 2 1226799999999999999999999999999997766554
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.13 E-value=2.7e-10 Score=108.06 Aligned_cols=143 Identities=18% Similarity=0.250 Sum_probs=113.3
Q ss_pred cccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCC-CChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLS-LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITA 94 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~-~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~ 94 (248)
.+|+ || +++ |.++..+|.+ ++.+. .+ .+..-...++...|.| ++|.+||+||.
T Consensus 18 ~lf~~lD~~~~-g~~d~~~l~k~~~~l~-------~~~~~~~~~~~l~~~~d~~------~dg~vDy~eF~--------- 74 (463)
T KOG0036|consen 18 CLFKELDSKND-GQVDLDQLEKGLEKLD-------HPKPNYEAAKMLFSAMDAN------RDGRVDYSEFK--------- 74 (463)
T ss_pred HHHHHhccCCC-CceeHHHHHHHHHhcC-------CCCCchHHHHHHHHhcccC------cCCcccHHHHH---------
Confidence 6799 99 999 9999999999 76532 23 3345567788999999 89999999993
Q ss_pred HHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHH
Q 025784 95 IADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDIL 174 (248)
Q Consensus 95 iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~ 174 (248)
.++.+. +..+...|+.+|.++||.|..+||.+.|..+|+.. +.+....+|
T Consensus 75 ---------------------~Y~~~~---E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l------~de~~~k~~ 124 (463)
T KOG0036|consen 75 ---------------------RYLDNK---ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL------SDEKAAKFF 124 (463)
T ss_pred ---------------------HHHHHh---HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc------CHHHHHHHH
Confidence 344222 23699999999999999999999999999987653 367788899
Q ss_pred HHhCCCCCcccCHHHHHHHHH----HHHHHHHHHhccCCeEEEe
Q 025784 175 KKHGAEGEEELGQAQFTELLR----QVLQDIVDALADKHIIIIP 214 (248)
Q Consensus 175 ~e~D~d~DG~Id~eEF~~lm~----kil~~~A~~L~~~PV~v~~ 214 (248)
+..|.++.+.|+++||...+. .-+..+-+.-+..-++.++
T Consensus 125 e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~~~idig 168 (463)
T KOG0036|consen 125 EHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWRHVLLIDIG 168 (463)
T ss_pred HHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhhhheEEEcc
Confidence 999999999999999999886 4455555555555566655
No 13
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.12 E-value=3e-10 Score=87.55 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=57.5
Q ss_pred HHHHHHhhhC-CCCCC-cccHHHHHHHHhc-cCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHH
Q 025784 127 LAENLFADLD-TEDEG-KVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (248)
Q Consensus 127 ~~~~~F~~lD-~D~dG-~LS~~EL~~al~~-lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~ 200 (248)
.+..+|+.+| +|++| +||++||+.+|.+ ++...+- ..+...+++|++++|.|+||.|||+||..+|..++-+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~--~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSS--QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccc--ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4667799999 89998 5999999999976 3221111 1135689999999999999999999999999988544
No 14
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.03 E-value=1.3e-09 Score=83.27 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=59.3
Q ss_pred HHHHHHhhhC-CCCCC-cccHHHHHHHHhc-cCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 127 LAENLFADLD-TEDEG-KVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 127 ~~~~~F~~lD-~D~dG-~LS~~EL~~al~~-lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
.+..+|+.|| .|++| +||..||+.+|.. +|...+..| +...+++|++++|.|++|.|+|+||..++..++-
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~--s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK--DADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 5899999997 99999 5999999999975 654333322 2567999999999999999999999999987654
No 15
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.99 E-value=2.2e-09 Score=82.23 Aligned_cols=68 Identities=15% Similarity=0.291 Sum_probs=58.3
Q ss_pred HHHHHHhhhC-CCCCC-cccHHHHHHHHhc-----cCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 127 LAENLFADLD-TEDEG-KVCKGEIQNALGH-----MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 127 ~~~~~F~~lD-~D~dG-~LS~~EL~~al~~-----lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
.+..+|+.+| .|++| +|+.+||+.+|.. +| -++ +...++++++++|.|+||.|+|+||..++..++-
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg----~~~--~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE----EIK--EQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc----CCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4889999998 89999 5999999999987 43 222 3567999999999999999999999999988765
Q ss_pred H
Q 025784 200 D 200 (248)
Q Consensus 200 ~ 200 (248)
+
T Consensus 83 ~ 83 (88)
T cd05027 83 A 83 (88)
T ss_pred H
Confidence 4
No 16
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.98 E-value=1.7e-09 Score=82.91 Aligned_cols=72 Identities=8% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHHHHhhhCC-CC-CCcccHHHHHHHHhc-cCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 126 MLAENLFADLDT-ED-EGKVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 126 ~~~~~~F~~lD~-D~-dG~LS~~EL~~al~~-lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
..++.+|+.+|. |+ +|+||.+||+.+|.. +|...|.+|. ...++.+++++|.|++|.|+|+||+.+|..+-.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s--~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKD--PMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcccc--HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 358999999997 97 799999999999975 4332344332 567999999999999999999999999886543
No 17
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.96 E-value=4e-09 Score=74.31 Aligned_cols=64 Identities=20% Similarity=0.420 Sum_probs=56.7
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHH
Q 025784 129 ENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (248)
Q Consensus 129 ~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~ 200 (248)
+.+|+.+|+|++|.||.+|++.+|.++ |++ .+.+..+++.+|.+++|.|+++||..++..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~----~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GLP----RSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CCC----HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999875 442 5678999999999999999999999999887654
No 18
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.95 E-value=5.1e-09 Score=86.75 Aligned_cols=140 Identities=14% Similarity=0.276 Sum_probs=106.3
Q ss_pred hhHhhcccccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHH
Q 025784 12 TQLRSLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (248)
Q Consensus 12 ~~i~~L~~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (248)
..+.+++++|. +| .+| |+|+.++.-++.+. +|...+..++.+.+.+...+.- .-.-|++++|+-.++
T Consensus 8 d~~~e~ke~F~lfD~~gD-~ki~~~q~gdvlRa------lG~nPT~aeV~k~l~~~~~~~~----~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGD-GKISGSQVGDVLRA------LGQNPTNAEVLKVLGQPKRREM----NVKRLDFEEFLPMYQ 76 (152)
T ss_pred chHHHHHHHHHHHhccCc-ccccHHHHHHHHHH------hcCCCcHHHHHHHHcCcccchh----hhhhhhHHHHHHHHH
Confidence 45688999999 99 999 99999999994432 4566778899999999887610 135799999976665
Q ss_pred HHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHH
Q 025784 90 DYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQ 169 (248)
Q Consensus 90 ~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~ 169 (248)
. +|.. ++ ...++. ..+-.+.||++++|.|...|||.+|-.+|..+ +.+.
T Consensus 77 ~----vakn--k~------------------q~t~ed-fvegLrvFDkeg~G~i~~aeLRhvLttlGekl------~eeE 125 (152)
T KOG0030|consen 77 Q----VAKN--KD------------------QGTYED-FVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL------TEEE 125 (152)
T ss_pred H----HHhc--cc------------------cCcHHH-HHHHHHhhcccCCcceeHHHHHHHHHHHHhhc------cHHH
Confidence 5 4544 21 112333 33457899999999999999999999987543 3677
Q ss_pred HHHHHHHhCCCCCcccCHHHHHHHH
Q 025784 170 LNDILKKHGAEGEEELGQAQFTELL 194 (248)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm 194 (248)
++.+++-+ .|.+|-|+|+.|...+
T Consensus 126 Ve~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 126 VEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHccc-cccCCcCcHHHHHHHH
Confidence 88888876 4688999999998754
No 19
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.92 E-value=5.5e-09 Score=80.22 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHhh-hCCCCCC-cccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 127 LAENLFAD-LDTEDEG-KVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 127 ~~~~~F~~-lD~D~dG-~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
.+..+|+. +|+||+| +||++||+.+|.+....+ +.-..++..++++++++|.|+||.|+|+||..+|.++.-
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~-~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASF-TKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHh-hcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 47889999 8999986 999999999998742111 001113568999999999999999999999999988743
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.86 E-value=1.1e-08 Score=78.32 Aligned_cols=72 Identities=11% Similarity=0.245 Sum_probs=58.8
Q ss_pred HHHHHHhhhCC-CC-CCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHH
Q 025784 127 LAENLFADLDT-ED-EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDI 201 (248)
Q Consensus 127 ~~~~~F~~lD~-D~-dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~ 201 (248)
.+.++|..+|. |+ +|+||.+||+.+|.+. ..+|.++ +.+.++++++++|.|++|.|+|+||..+|..++.+-
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~-~~lg~k~--t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~~ 84 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKE-LTIGSKL--QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALIY 84 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHH-HhcCCCC--CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 37789999998 67 8999999999999641 0124332 367899999999999999999999999999887653
No 21
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.1e-08 Score=94.58 Aligned_cols=127 Identities=14% Similarity=0.218 Sum_probs=90.4
Q ss_pred cccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCC---hhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLP---QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~---~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~ 93 (248)
.+|+ -| |+| |.+|++|+..+.+=. ..| +-.+..-|..+|.| ++|.|++.||
T Consensus 167 ~rFk~AD~d~d-g~lt~EEF~aFLHPE--------e~p~M~~iVi~Etl~d~Dkn------~DG~I~~eEf--------- 222 (325)
T KOG4223|consen 167 ERFKAADQDGD-GSLTLEEFTAFLHPE--------EHPHMKDIVIAETLEDIDKN------GDGKISLEEF--------- 222 (325)
T ss_pred HHHhhcccCCC-CcccHHHHHhccChh--------hcchHHHHHHHHHHhhcccC------CCCceeHHHH---------
Confidence 7899 99 999 999999999942200 111 34678899999999 7999999999
Q ss_pred HHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChH--HHH
Q 025784 94 AIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFP--QLN 171 (248)
Q Consensus 94 ~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~--~~~ 171 (248)
|++--...+ .-+.|.-.-.+-...|...|+|+||+|+.+||+.-+ +|.-.+-. ...
T Consensus 223 -igd~~~~~~-------------~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI--------~P~~~d~A~~EA~ 280 (325)
T KOG4223|consen 223 -IGDLYSHEG-------------NEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWI--------LPSEQDHAKAEAR 280 (325)
T ss_pred -HhHHhhccC-------------CCCCcccccccHHHHHHHhhcCCCCccCHHHHhccc--------CCCCccHHHHHHH
Confidence 444333321 111222222335678888899999999999999443 44333333 356
Q ss_pred HHHHHhCCCCCcccCHHHHH
Q 025784 172 DILKKHGAEGEEELGQAQFT 191 (248)
Q Consensus 172 ~i~~e~D~d~DG~Id~eEF~ 191 (248)
-++-+.|.|+||++|++|-+
T Consensus 281 hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 281 HLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred HHhhhhccCccccccHHHHh
Confidence 78999999999999999854
No 22
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.81 E-value=5e-08 Score=80.67 Aligned_cols=110 Identities=9% Similarity=0.147 Sum_probs=86.7
Q ss_pred hhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhh
Q 025784 55 QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFAD 134 (248)
Q Consensus 55 ~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~ 134 (248)
..++.++++.+|.+ ++|.|+-.|+...|+.. +.. . -+..+..++++
T Consensus 7 ~~el~~~F~~fD~d------~~G~i~~~el~~~lr~l--------g~~---------------~-----t~~el~~~~~~ 52 (151)
T KOG0027|consen 7 ILELKEAFQLFDKD------GDGKISVEELGAVLRSL--------GQN---------------P-----TEEELRDLIKE 52 (151)
T ss_pred HHHHHHHHHHHCCC------CCCcccHHHHHHHHHHc--------CCC---------------C-----CHHHHHHHHHH
Confidence 34688999999999 79999999998877762 111 1 12369999999
Q ss_pred hCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 135 LDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 135 lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
+|.|++|.|+..|+...+.+......... .....+.++|+-+|.|+||.|+.+|++.+|+..-.
T Consensus 53 ~D~dg~g~I~~~eF~~l~~~~~~~~~~~~-~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 53 IDLDGDGTIDFEEFLDLMEKLGEEKTDEE-ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred hCCCCCCeEcHHHHHHHHHhhhccccccc-ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 99999999999999999988654221111 12457999999999999999999999999886543
No 23
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.79 E-value=2.7e-08 Score=76.49 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=57.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHH
Q 025784 126 MLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (248)
Q Consensus 126 ~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~ 200 (248)
..+..+|+.+|.|++|+||.+|++.+|... |++ ...++.|+..+|.+++|.|+++||..+|..+-..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~----~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLP----QTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCC----HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 358999999999999999999999999774 443 5678999999999999999999999877765443
No 24
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.77 E-value=4.2e-08 Score=73.82 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=57.4
Q ss_pred HHHHHHhhhCC--CCCCcccHHHHHHHHhc-cCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHH
Q 025784 127 LAENLFADLDT--EDEGKVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (248)
Q Consensus 127 ~~~~~F~~lD~--D~dG~LS~~EL~~al~~-lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil 198 (248)
.+..+|..+|+ |++|+||.+|++.++.. +|...+ +..+...++.|++.+|.+++|.|+|+||..+|....
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~--~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLK--NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhcc--CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 48889999999 89999999999999975 332111 112356799999999999999999999999998773
No 25
>PTZ00183 centrin; Provisional
Probab=98.75 E-value=1.2e-07 Score=76.77 Aligned_cols=102 Identities=8% Similarity=0.094 Sum_probs=79.2
Q ss_pred hhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhh
Q 025784 56 NLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADL 135 (248)
Q Consensus 56 ~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~l 135 (248)
..+..++..+|.+ ++|.|++.||...++.+ ++. . ++ ..+..+|+.+
T Consensus 17 ~~~~~~F~~~D~~------~~G~i~~~e~~~~l~~~------g~~-----------------~-~~----~~~~~l~~~~ 62 (158)
T PTZ00183 17 KEIREAFDLFDTD------GSGTIDPKELKVAMRSL------GFE-----------------P-KK----EEIKQMIADV 62 (158)
T ss_pred HHHHHHHHHhCCC------CCCcccHHHHHHHHHHh------CCC-----------------C-CH----HHHHHHHHHh
Confidence 3567778888988 79999999998777642 111 1 11 2489999999
Q ss_pred CCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 136 DTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 136 D~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
|.+++|.|+..|...++.... ++......+..+|+.+|.+++|.|+++||...++.
T Consensus 63 d~~~~g~i~~~eF~~~~~~~~-----~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 63 DKDGSGKIDFEEFLDIMTKKL-----GERDPREEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred CCCCCCcEeHHHHHHHHHHHh-----cCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 999999999999998875531 11122457899999999999999999999988875
No 26
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=5.3e-08 Score=90.10 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=98.5
Q ss_pred hHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHH
Q 025784 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (248)
Q Consensus 13 ~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (248)
.-+.|..+|. +| ++| |.+|.+||+. ++.+-.. ....+...-+...|.| .+|.|+++|+...+-
T Consensus 75 ~~~rl~~l~~~iD~~~D-gfv~~~El~~wi~~s~k~-------~v~~~~~~~~~~~d~~------~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSD-GFVTESELKAWIMQSQKK-------YVVEEAARRWDEYDKN------KDGFITWEEYLPQTY 140 (325)
T ss_pred hHHHHHHHHhhhcCCCC-CceeHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccC------ccceeeHHHhhhhhh
Confidence 3455667889 99 999 9999999999 7654211 1133455556666677 799999999955443
Q ss_pred HHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHH---HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCC
Q 025784 90 DYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTM---LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSE 166 (248)
Q Consensus 90 ~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~---~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~ 166 (248)
..-. .+......-.+ ..|.. .-+..|+.-|.|++|.+|++|+-.+|-- .+ -|..-
T Consensus 141 ~~~~----------------~~~~~~d~e~~-~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHP--Ee---~p~M~ 198 (325)
T KOG4223|consen 141 GRVD----------------LPDEFPDEEDN-EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHP--EE---HPHMK 198 (325)
T ss_pred hccc----------------Cccccccchhc-HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccCh--hh---cchHH
Confidence 3100 00001111111 22332 2457899999999999999999965511 11 13333
Q ss_pred hHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 167 FPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 167 ~~~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
.+++.+-+.+.|.||||.|+++||..-|..
T Consensus 199 ~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 199 DIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 567888888999999999999999876654
No 27
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.63 E-value=1.3e-07 Score=76.20 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=52.1
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 124 FTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 124 f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
....+.-+|..+|.|+||+||++||+++. + + | ...-++.+|+.+|.|+||.||++||+..+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----~-~---~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L----D-P---NEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c----c-c---hHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34568999999999999999999999865 2 1 1 134578899999999999999999998873
No 28
>PTZ00184 calmodulin; Provisional
Probab=98.62 E-value=3.6e-07 Score=72.85 Aligned_cols=102 Identities=8% Similarity=0.133 Sum_probs=77.3
Q ss_pred hHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhC
Q 025784 57 LKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLD 136 (248)
Q Consensus 57 ~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD 136 (248)
.+...+..+|.+ ++|.|+++||...++. ++.. .. +..+..+|+.+|
T Consensus 12 ~~~~~F~~~D~~------~~G~i~~~e~~~~l~~--------~~~~---------------~~-----~~~~~~~~~~~d 57 (149)
T PTZ00184 12 EFKEAFSLFDKD------GDGTITTKELGTVMRS--------LGQN---------------PT-----EAELQDMINEVD 57 (149)
T ss_pred HHHHHHHHHcCC------CCCcCCHHHHHHHHHH--------hCCC---------------CC-----HHHHHHHHHhcC
Confidence 455778888888 7999999999765543 1211 11 125899999999
Q ss_pred CCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHH
Q 025784 137 TEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (248)
Q Consensus 137 ~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ki 197 (248)
.+++|.|+.++...++.... +.......+..+|+.+|.|++|.|+.+||...++.+
T Consensus 58 ~~~~g~i~~~ef~~~l~~~~-----~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 58 ADGNGTIDFPEFLTLMARKM-----KDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred cCCCCcCcHHHHHHHHHHhc-----cCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 99999999999998876531 111123468899999999999999999999888653
No 29
>PLN02964 phosphatidylserine decarboxylase
Probab=98.62 E-value=1.3e-07 Score=95.35 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=76.5
Q ss_pred echhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccC-CCCChhh---HHHHHHhhcCCCCCcccccccccH
Q 025784 9 IDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFG-LSLPQNL---KSTALKHISGSDDDVTFRIKEFDR 81 (248)
Q Consensus 9 ldg~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g-~~~~~~~---~~~il~~~d~~~~~~~~~~g~I~~ 81 (248)
+.-.+++++.+.|. +| |+| |++ |.. +..+ | ...++.+ +..+++.+|.+ ++|.|++
T Consensus 137 f~~kqi~elkeaF~lfD~dgd-G~i----Lg~ilrsl-------G~~~pte~e~~fi~~mf~~~D~D------gdG~Idf 198 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSS-NKV----VGSIFVSC-------SIEDPVETERSFARRILAIVDYD------EDGQLSF 198 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCC-CcC----HHHHHHHh-------CCCCCCHHHHHHHHHHHHHhCCC------CCCeEcH
Confidence 34678889999999 99 999 997 555 4332 3 2333444 78999999999 7999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 025784 82 DHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (248)
Q Consensus 82 ~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~ 154 (248)
+||...|.. +... ...+ .+..+|+.+|.|++|+||.+||+.+|..
T Consensus 199 dEFl~lL~~--------lg~~---------------~seE-----EL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 199 SEFSDLIKA--------FGNL---------------VAAN-----KKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHH--------hccC---------------CCHH-----HHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 999776653 1110 1122 4999999999999999999999999987
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.62 E-value=8.7e-08 Score=65.71 Aligned_cols=53 Identities=15% Similarity=0.508 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 139 DEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 139 ~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
++|.||+++++.+|..+|. +.. ++..++.+|..+|.|++|.|+|+||+.+|+.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~----~~~-s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI----KDL-SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS----SSS-CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC----CCC-CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999966543 311 3667999999999999999999999999874
No 31
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.59 E-value=3e-07 Score=88.47 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=104.2
Q ss_pred cccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIA 96 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA 96 (248)
..|+ .| +.+ |+||.+.--.+++ ...|+++|=-.+.+-+... + .+|.+.|-+..+.++-=
T Consensus 468 ~eF~~~D~~ks-G~lsis~Wa~~mE-----~i~~L~LPWr~L~~kla~~--s------~d~~v~Y~~~~~~l~~e----- 528 (631)
T KOG0377|consen 468 DEFRKYDPKKS-GKLSISHWAKCME-----NITGLNLPWRLLRPKLANG--S------DDGKVEYKSTLDNLDTE----- 528 (631)
T ss_pred HHHHhcChhhc-CeeeHHHHHHHHH-----HHhcCCCcHHHhhhhccCC--C------cCcceehHhHHHHhhhh-----
Confidence 7799 99 878 9999999888543 3578889865555444332 2 36788888775544321
Q ss_pred hhccCCCeEEEEeccchhhh-hcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHH
Q 025784 97 DELKDDPLVVCVLDGNMLKL-FLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILK 175 (248)
Q Consensus 97 ~~L~~~pivv~~lDGs~l~~-fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~ 175 (248)
.|.-- . |+++.+ +-.++ ..++.+|+..|+|++|.||.+|.+.+..-++.+...| -+...+.++-.
T Consensus 529 -----~~~~e--a-~~slvetLYr~k----s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~--i~~~~i~~la~ 594 (631)
T KOG0377|consen 529 -----VILEE--A-GSSLVETLYRNK----SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGA--ISDDEILELAR 594 (631)
T ss_pred -----hHHHH--H-HhHHHHHHHhch----hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCC--cCHHHHHHHHH
Confidence 00000 0 233322 22233 3699999999999999999999999998887654433 23567888888
Q ss_pred HhCCCCCcccCHHHHHHHHHHHHH
Q 025784 176 KHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 176 e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
..|-|+||.||..||.+.++=+-.
T Consensus 595 ~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 595 SMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hhccCCCCcccHHHHHHHHhhhcc
Confidence 899999999999999999885543
No 32
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.58 E-value=1.2e-07 Score=72.94 Aligned_cols=70 Identities=10% Similarity=0.179 Sum_probs=54.1
Q ss_pred hHhhcccccc-CC--CCCCC-ccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 13 QLRSLSQPLA-LP--TSDSS-TVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 13 ~i~~L~~~F~-lD--d~d~G-~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
-|..++.+|. +| |++ | +||.+||+. +...... .++...++.++..+|+++|.| ++|.|+|+||...
T Consensus 8 a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~~--~~~~~~~~~~v~~i~~elD~n------~dG~Idf~EF~~l 78 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELTD--FLSSQKDPMLVDKIMNDLDSN------KDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhHH--hcccccCHHHHHHHHHHhCCC------CCCCCCHHHHHHH
Confidence 4667788899 88 788 8 699999999 5432111 012234678999999999999 7999999999998
Q ss_pred HHHH
Q 025784 88 ASDY 91 (248)
Q Consensus 88 l~~i 91 (248)
+..+
T Consensus 79 ~~~l 82 (93)
T cd05026 79 VAAL 82 (93)
T ss_pred HHHH
Confidence 8876
No 33
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.58 E-value=2.3e-07 Score=62.19 Aligned_cols=61 Identities=18% Similarity=0.450 Sum_probs=53.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHH
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELL 194 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm 194 (248)
+..+|+.+|.+++|.|+..+++.++..++ .++ +.+.+..+++.+|.+++|.|+++||...+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~----~~~--~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG----EGL--SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC----CCC--CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57889999999999999999999998864 332 36678899999999999999999998765
No 34
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.55 E-value=3.6e-07 Score=79.75 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=78.8
Q ss_pred cccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAI 95 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~i 95 (248)
.+|+ +| |+| |+|+..|+.. +.-. -.+.+++-..=+++.+|.| ++|.|++.|+...++.|.
T Consensus 68 ~vF~~fD~~~d-g~i~F~Efi~als~~-------~rGt~eekl~w~F~lyD~d------gdG~It~~Eml~iv~~i~--- 130 (193)
T KOG0044|consen 68 LVFRTFDKNKD-GTIDFLEFICALSLT-------SRGTLEEKLKWAFRLYDLD------GDGYITKEEMLKIVQAIY--- 130 (193)
T ss_pred HHHHHhcccCC-CCcCHHHHHHHHHHH-------cCCcHHHHhhhhheeecCC------CCceEcHHHHHHHHHHHH---
Confidence 5599 99 999 9999999877 5432 1245666677789999999 799999999987666643
Q ss_pred HhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 025784 96 ADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (248)
Q Consensus 96 A~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~ 154 (248)
+-... ...-+++..=+..+..+|+.+|.|+||.||.+|..++...
T Consensus 131 -~m~~~-------------~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 131 -QMTGS-------------KALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred -HHccc-------------ccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 33333 0111234445568999999999999999999999987654
No 35
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.55 E-value=9.7e-08 Score=67.69 Aligned_cols=61 Identities=7% Similarity=0.099 Sum_probs=46.2
Q ss_pred cccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 17 LSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 17 L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
|.++|+ +| |++ |+||.+||+. +..++.. .....+++.+..+++.+|.| ++|.|+|+||...
T Consensus 2 l~~~F~~~D~d~~-G~i~~~el~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~d------~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGD-GYISKEELRRALKHLGRD---MSDEESDEMIDQIFREFDTD------GDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSS-SEEEHHHHHHHHHHTTSH---STHHHHHHHHHHHHHHHTTT------SSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCcc-CCCCHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHhCCC------CcCCCcHHHHhcc
Confidence 457899 99 999 9999999999 6654422 00011245677779999999 7999999999653
No 36
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.53 E-value=3.2e-07 Score=69.91 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=55.5
Q ss_pred HHHHHHhhhCCC--CCCcccHHHHHHHHhcc-CcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 127 LAENLFADLDTE--DEGKVCKGEIQNALGHM-GVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 127 ~~~~~F~~lD~D--~dG~LS~~EL~~al~~l-gv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
.+...|..++.. ++|+||++||+.+|.+. +. .++...+...+++||+.+|.|++|.|+|+||..+|..++.
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~--~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN--FLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH--hhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 367789999866 48999999999999742 21 0111223567999999999999999999999999998754
No 37
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.50 E-value=2.4e-07 Score=71.31 Aligned_cols=71 Identities=8% Similarity=0.156 Sum_probs=56.1
Q ss_pred hHhhcccccc-CC--CCCCCccCHHHHHH-HHHhcccccccCCCCCh-hhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 13 QLRSLSQPLA-LP--TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQ-NLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 13 ~i~~L~~~F~-lD--d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~-~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
-|..|+++|+ +| +++ |+||.+||+. +.. .+|--+++ .++..+|+.+|.| ++|.|+|+||...
T Consensus 6 ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~------elg~~ls~~~~v~~mi~~~D~d------~DG~I~F~EF~~l 72 (89)
T cd05022 6 AIETLVSNFHKASVKGGK-ESLTASEFQELLTQ------QLPHLLKDVEGLEEKMKNLDVN------QDSKLSFEEFWEL 72 (89)
T ss_pred HHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHH------HhhhhccCHHHHHHHHHHhCCC------CCCCCcHHHHHHH
Confidence 4667889999 99 577 9999999999 544 12223556 8999999999999 7999999999888
Q ss_pred HHHHHHHHH
Q 025784 88 ASDYITAIA 96 (248)
Q Consensus 88 l~~il~~iA 96 (248)
+..+..+..
T Consensus 73 ~~~l~~~~~ 81 (89)
T cd05022 73 IGELAKAVK 81 (89)
T ss_pred HHHHHHHHH
Confidence 887654443
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.47 E-value=4.2e-07 Score=69.55 Aligned_cols=72 Identities=10% Similarity=0.148 Sum_probs=57.1
Q ss_pred hHhhcccccc-CC--CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHH
Q 025784 13 QLRSLSQPLA-LP--TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (248)
Q Consensus 13 ~i~~L~~~F~-lD--d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (248)
.|..+.+.|. .| |+++|+||.+||++ +.... + +|..+++.++..+|+.+|.| ++|.|+|+||...+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~-~---lg~k~t~~ev~~m~~~~D~d------~dG~Idf~EFv~lm 77 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKEL-T---IGSKLQDAEIAKLMEDLDRN------KDQEVNFQEYVTFL 77 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHH-h---cCCCCCHHHHHHHHHHhcCC------CCCCCcHHHHHHHH
Confidence 4667778999 88 67349999999999 54210 0 35668899999999999999 79999999998888
Q ss_pred HHHHHH
Q 025784 89 SDYITA 94 (248)
Q Consensus 89 ~~il~~ 94 (248)
..+..|
T Consensus 78 ~~l~~~ 83 (88)
T cd05029 78 GALALI 83 (88)
T ss_pred HHHHHH
Confidence 775443
No 39
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.43 E-value=2.6e-07 Score=78.43 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=55.3
Q ss_pred hhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 11 GTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 11 g~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
++.-.+|+..|+ +| |+| |+||..||+. +..+ |-.+|+++++.+++.++.| ++|.|+|++|.+.
T Consensus 88 ~~~~Eel~~aF~~fD~d~d-G~Is~~eL~~vl~~l-------ge~~~deev~~ll~~~d~d------~dG~i~~~eF~~~ 153 (160)
T COG5126 88 GDKEEELREAFKLFDKDHD-GYISIGELRRVLKSL-------GERLSDEEVEKLLKEYDED------GDGEIDYEEFKKL 153 (160)
T ss_pred CCcHHHHHHHHHHhCCCCC-ceecHHHHHHHHHhh-------cccCCHHHHHHHHHhcCCC------CCceEeHHHHHHH
Confidence 445677889999 99 999 9999999999 6653 4569999999999999999 7999999999654
Q ss_pred H
Q 025784 88 A 88 (248)
Q Consensus 88 l 88 (248)
+
T Consensus 154 ~ 154 (160)
T COG5126 154 I 154 (160)
T ss_pred H
Confidence 4
No 40
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.43 E-value=1.4e-06 Score=67.45 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=57.2
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccC--CCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFG--VPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDI 201 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~G--lpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~ 201 (248)
.+..+|..+-.+ .|+||+.|++..|.+ +++ +..+.++..++++++..|.|+||.|||.||..++-.+..+-
T Consensus 9 ~lI~~FhkYaG~-~~tLsk~Elk~Ll~~---Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac 81 (91)
T cd05024 9 KMMLTFHKFAGE-KNYLNRDDLQKLMEK---EFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIAC 81 (91)
T ss_pred HHHHHHHHHcCC-CCcCCHHHHHHHHHH---HhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 366788888754 679999999998866 222 33444677899999999999999999999999999986553
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.43 E-value=6.9e-07 Score=68.62 Aligned_cols=66 Identities=26% Similarity=0.221 Sum_probs=56.7
Q ss_pred echhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHH
Q 025784 9 IDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (248)
Q Consensus 9 ldg~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (248)
+.-+++..+.+.|. +| |++ |.||.+|++. +.. .++++.++..++..+|.+ ++|.|+|+||.
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~---------~~~~~~ev~~i~~~~d~~------~~g~I~~~eF~ 67 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQD-GTVTGAQAKPILLK---------SGLPQTLLAKIWNLADID------NDGELDKDEFA 67 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHH---------cCCCHHHHHHHHHHhcCC------CCCCcCHHHHH
Confidence 34568899999999 99 999 9999999999 543 246788999999999999 79999999997
Q ss_pred HHHHH
Q 025784 86 KLASD 90 (248)
Q Consensus 86 ~~l~~ 90 (248)
..+..
T Consensus 68 ~~~~~ 72 (96)
T smart00027 68 LAMHL 72 (96)
T ss_pred HHHHH
Confidence 76655
No 42
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.42 E-value=6.2e-07 Score=68.65 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=56.1
Q ss_pred hHhhcccccc-CC--CCCCC-ccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHH
Q 025784 13 QLRSLSQPLA-LP--TSDSS-TVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (248)
Q Consensus 13 ~i~~L~~~F~-lD--d~d~G-~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (248)
-|..|+++|. +| |++ | +|+.+||+.++..... ...|...++.++..+|+.+|.| ++|.|+|.||...+
T Consensus 6 ~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~-~~lg~~~~~~~v~~~i~~~D~n------~dG~v~f~eF~~li 77 (88)
T cd05027 6 AMVALIDVFHQYSGREGD-KHKLKKSELKELINNELS-HFLEEIKEQEVVDKVMETLDSD------GDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhH-HHhcCCCCHHHHHHHHHHhCCC------CCCcCcHHHHHHHH
Confidence 4667889999 96 788 9 6999999994432111 0134456678899999999999 79999999998877
Q ss_pred HHHHH
Q 025784 89 SDYIT 93 (248)
Q Consensus 89 ~~il~ 93 (248)
..+..
T Consensus 78 ~~~~~ 82 (88)
T cd05027 78 AMVTT 82 (88)
T ss_pred HHHHH
Confidence 77543
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.36 E-value=1e-06 Score=67.08 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=54.5
Q ss_pred Hhhcccccc-C-C-CCCCC-ccCHHHHHH-HHH-hcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 14 LRSLSQPLA-L-P-TSDSS-TVTGAQLLD-FAE-NEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 14 i~~L~~~F~-l-D-d~d~G-~ls~~EL~~-l~~-~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
+..+++.|. + | |++ | +||..||+. +.. ++.. +|...++.++..+|+.+|.+ ++|.|+|.||...
T Consensus 8 ~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~~---~~~~~s~~~v~~i~~~~D~d------~~G~I~f~eF~~l 77 (92)
T cd05025 8 METLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSDF---LDAQKDADAVDKIMKELDEN------GDGEVDFQEFVVL 77 (92)
T ss_pred HHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHCCC------CCCcCcHHHHHHH
Confidence 456778999 9 5 889 9 599999999 532 3321 33345788999999999999 7999999999887
Q ss_pred HHHHH
Q 025784 88 ASDYI 92 (248)
Q Consensus 88 l~~il 92 (248)
+..+.
T Consensus 78 ~~~~~ 82 (92)
T cd05025 78 VAALT 82 (92)
T ss_pred HHHHH
Confidence 77753
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.35 E-value=1.4e-06 Score=61.14 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=50.9
Q ss_pred cccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITA 94 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~ 94 (248)
+.|. +| |++ |.||.+|++. +..+ ++|+..+..+++.++.+ ++|.|+|.||...++-+..+
T Consensus 3 ~~F~~~D~~~~-G~i~~~el~~~l~~~---------g~~~~~~~~i~~~~d~~------~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 3 QIFRSLDPDGD-GLISGDEARPFLGKS---------GLPRSVLAQIWDLADTD------KDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred HHHHHhCCCCC-CcCcHHHHHHHHHHc---------CCCHHHHHHHHHHhcCC------CCCcCCHHHHHHHHHHHHHH
Confidence 5699 99 999 9999999999 6442 35788899999999999 79999999998888776544
No 45
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.31 E-value=1.8e-06 Score=66.30 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=54.7
Q ss_pred hhHhhcccccc--CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHH
Q 025784 12 TQLRSLSQPLA--LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (248)
Q Consensus 12 ~~i~~L~~~F~--lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (248)
.-|..|.++|. .| ++++|+||.+||+.+..-.... +.+....+.++..+|+.+|.| ++|.|+|+||...+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~-~~~~~~~~~~~~~ll~~~D~d------~DG~I~f~EF~~l~ 78 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELAS-FTKNQKDPGVLDRMMKKLDLN------SDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhH-hhcCCCCHHHHHHHHHHcCCC------CCCcCcHHHHHHHH
Confidence 45778889999 56 7884499999999944322110 112345578999999999999 79999999998877
Q ss_pred HHH
Q 025784 89 SDY 91 (248)
Q Consensus 89 ~~i 91 (248)
..+
T Consensus 79 ~~l 81 (89)
T cd05023 79 GGL 81 (89)
T ss_pred HHH
Confidence 664
No 46
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.24 E-value=3.2e-06 Score=71.13 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=79.0
Q ss_pred HHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCC
Q 025784 58 KSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDT 137 (248)
Q Consensus 58 ~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~ 137 (248)
.+.+.+.|..| |+|.+++..|...++- +..+|-. .-.+.=+|+..|-
T Consensus 73 k~ri~e~FSeD------G~GnlsfddFlDmfSV-~sE~APr--------------------------dlK~~YAFkIYDf 119 (189)
T KOG0038|consen 73 KRRICEVFSED------GRGNLSFDDFLDMFSV-FSEMAPR--------------------------DLKAKYAFKIYDF 119 (189)
T ss_pred HHHHHHHhccC------CCCcccHHHHHHHHHH-HHhhChH--------------------------HhhhhheeEEeec
Confidence 34566677778 7999999999886653 3333321 1136778999999
Q ss_pred CCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 138 EDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 138 D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
|+|+.|.+..|...+.+++.. ++.+.+-.-.++.++++.|-||||++++.||..++.
T Consensus 120 d~D~~i~~~DL~~~l~~lTr~-eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 120 DGDEFIGHDDLEKTLTSLTRD-ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred CCCCcccHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 999999999999999998754 553222122488999999999999999999998865
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.20 E-value=3.3e-06 Score=64.68 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=53.5
Q ss_pred Hhhcccccc-CC--CC-CCCccCHHHHHH-HHH-hcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 14 LRSLSQPLA-LP--TS-DSSTVTGAQLLD-FAE-NEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 14 i~~L~~~F~-lD--d~-d~G~ls~~EL~~-l~~-~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
+..+.+.|. +| |+ + |+||..||+. +.. .+. .+|...++.++..+++.+|.+ ++|.|+|+||...
T Consensus 7 ~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~---~lg~~~s~~ei~~~~~~~D~~------~dg~I~f~eF~~l 76 (94)
T cd05031 7 MESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSE---FLKNQKDPMAVDKIMKDLDQN------RDGKVNFEEFVSL 76 (94)
T ss_pred HHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHH---HhhccccHHHHHHHHHHhCCC------CCCcCcHHHHHHH
Confidence 455678899 97 65 6 9999999999 543 221 134567888999999999999 7999999999887
Q ss_pred HHHH
Q 025784 88 ASDY 91 (248)
Q Consensus 88 l~~i 91 (248)
+..+
T Consensus 77 ~~~~ 80 (94)
T cd05031 77 VAGL 80 (94)
T ss_pred HHHH
Confidence 7663
No 48
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=1.2e-05 Score=68.18 Aligned_cols=103 Identities=12% Similarity=0.183 Sum_probs=79.4
Q ss_pred hhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhh
Q 025784 56 NLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADL 135 (248)
Q Consensus 56 ~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~l 135 (248)
.++.+.+..|+++ ++|.|+|.|+.-.|+- ..|--++. .+..+-...
T Consensus 33 q~i~e~f~lfd~~------~~g~iD~~EL~vAmra------------------------lGFE~~k~----ei~kll~d~ 78 (172)
T KOG0028|consen 33 QEIKEAFELFDPD------MAGKIDVEELKVAMRA------------------------LGFEPKKE----EILKLLADV 78 (172)
T ss_pred hhHHHHHHhhccC------CCCcccHHHHHHHHHH------------------------cCCCcchH----HHHHHHHhh
Confidence 4578899999999 7999999999554543 22322333 588899999
Q ss_pred CCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHH
Q 025784 136 DTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (248)
Q Consensus 136 D~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ki 197 (248)
|++++|+|+.++++..+... +|.-. +.+.+..+|+.+|.|++|+||+.+|+.+++++
T Consensus 79 dk~~~g~i~fe~f~~~mt~k---~~e~d--t~eEi~~afrl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 79 DKEGSGKITFEDFRRVMTVK---LGERD--TKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred hhccCceechHHHHHHHHHH---HhccC--cHHHHHHHHHcccccCCCCcCHHHHHHHHHHh
Confidence 99999999999999775432 22211 25678999999999999999999999887754
No 49
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.19 E-value=5e-06 Score=56.87 Aligned_cols=49 Identities=8% Similarity=0.155 Sum_probs=43.1
Q ss_pred CccCHHHHHH-HHHhcccccccCCC-CChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHH
Q 025784 29 STVTGAQLLD-FAENEASSSLFGLS-LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (248)
Q Consensus 29 G~ls~~EL~~-l~~~~~~~~~~g~~-~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (248)
|.||.+||+. +.. +|.. ++++++..+++.+|.+ ++|.|+|.||...|++
T Consensus 3 G~i~~~~~~~~l~~-------~g~~~~s~~e~~~l~~~~D~~------~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSK-------LGIKDLSEEEVDRLFREFDTD------GDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHH-------TTSSSSCHHHHHHHHHHHTTS------SSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHH-------hCCCCCCHHHHHHHHHhcccC------CCCCCCHHHHHHHHHh
Confidence 9999999999 633 4677 9999999999999999 7999999999777654
No 50
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.12 E-value=1.4e-05 Score=70.20 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=57.2
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil 198 (248)
-+..+|++.|.|.||+|+-.||+..|+++| +| + +.-...+|++++|.|.||+|||-||.=.+++.+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg----ap-Q-THL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLG----AP-Q-THLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhC----Cc-h-hhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 478999999999999999999999999985 43 1 133488999999999999999999999888765
No 51
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.11 E-value=5e-06 Score=63.31 Aligned_cols=68 Identities=6% Similarity=0.051 Sum_probs=53.6
Q ss_pred hHhhcccccc-CC--CCCCCccCHHHHHH-HHHhcccccccCCCCC----hhhHHHHHHhhcCCCCCcccccccccHHHH
Q 025784 13 QLRSLSQPLA-LP--TSDSSTVTGAQLLD-FAENEASSSLFGLSLP----QNLKSTALKHISGSDDDVTFRIKEFDRDHA 84 (248)
Q Consensus 13 ~i~~L~~~F~-lD--d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~----~~~~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (248)
-|..+...|. .+ ++++|+||.+||+. +... +|..++ +.++..+++.+|.+ ++|.|+|+||
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~------~g~~~t~~~~~~~v~~i~~~~D~d------~dG~I~f~eF 73 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKE------LPNFLKKEKNQKAIDKIFEDLDTN------QDGQLSFEEF 73 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHH------hhHhhccCCCHHHHHHHHHHcCCC------CCCcCcHHHH
Confidence 4677788899 88 44459999999999 5332 222344 88999999999999 7999999999
Q ss_pred HHHHHHHH
Q 025784 85 SKLASDYI 92 (248)
Q Consensus 85 ~~~l~~il 92 (248)
...+..++
T Consensus 74 ~~~~~~~~ 81 (88)
T cd05030 74 LVLVIKVG 81 (88)
T ss_pred HHHHHHHH
Confidence 88888763
No 52
>PLN02964 phosphatidylserine decarboxylase
Probab=98.09 E-value=3e-05 Score=78.46 Aligned_cols=137 Identities=12% Similarity=0.202 Sum_probs=92.3
Q ss_pred CccCHHHHHHHHHhcccccccCCCC-ChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEE
Q 025784 29 STVTGAQLLDFAENEASSSLFGLSL-PQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVC 107 (248)
Q Consensus 29 G~ls~~EL~~l~~~~~~~~~~g~~~-~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~ 107 (248)
.++|+.+|..++++- +..+.- ...++.+++..+|.| ++|.+ ....++. + +.
T Consensus 119 ~~~s~n~lv~~~e~~----~t~f~~kqi~elkeaF~lfD~d------gdG~i----Lg~ilrs----l----G~------ 170 (644)
T PLN02964 119 NRLSKNTLVGYCELD----LFDFVTQEPESACESFDLLDPS------SSNKV----VGSIFVS----C----SI------ 170 (644)
T ss_pred CCCCHHHhhhheeec----HhhccHHHHHHHHHHHHHHCCC------CCCcC----HHHHHHH----h----CC------
Confidence 578889998865431 111111 134677889999999 68886 2222222 1 10
Q ss_pred EeccchhhhhcCCcch-hHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccC
Q 025784 108 VLDGNMLKLFLGNEDD-FTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELG 186 (248)
Q Consensus 108 ~lDGs~l~~fl~de~~-f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id 186 (248)
.++.. -...+..+|+.+|.|++|.|+.+|+..++..++. +. ..+.+.++|+.+|.|++|.|+
T Consensus 171 -----------~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~--~~----seEEL~eaFk~fDkDgdG~Is 233 (644)
T PLN02964 171 -----------EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN--LV----AANKKEELFKAADLNGDGVVT 233 (644)
T ss_pred -----------CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc--CC----CHHHHHHHHHHhCCCCCCcCC
Confidence 01221 1235899999999999999999999999987642 11 256799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCeE
Q 025784 187 QAQFTELLRQVLQDIVDALADKHII 211 (248)
Q Consensus 187 ~eEF~~lm~kil~~~A~~L~~~PV~ 211 (248)
++||+.+|+..-... ..+...||.
T Consensus 234 ~dEL~~vL~~~~~~~-~~~~~cp~c 257 (644)
T PLN02964 234 IDELAALLALQQEQE-PIINNCPVC 257 (644)
T ss_pred HHHHHHHHHhcccCc-chhhhchhh
Confidence 999999988743221 335555643
No 53
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.03 E-value=4.5e-06 Score=51.36 Aligned_cols=27 Identities=15% Similarity=0.582 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 170 LNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
+.++|+.+|.|+||.||++||+.+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 678999999999999999999999986
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.97 E-value=7.8e-06 Score=50.32 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=25.8
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALGHM 155 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~~l 155 (248)
+..+|+.+|+|+||+||.+|++.++.++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 7899999999999999999999988753
No 55
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.96 E-value=1e-05 Score=71.58 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=66.8
Q ss_pred hhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHH
Q 025784 15 RSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDY 91 (248)
Q Consensus 15 ~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~i 91 (248)
..-+++|+ .| |++ |+|+..||++ +..+ |..+|++.++-++.+++.- ++|.|.+.+|.+.+-.
T Consensus 124 ~~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~-------Gy~Lspq~~~~lv~kyd~~------~~g~i~FD~FI~ccv~- 188 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRS-GTIDSSELRQALTQL-------GYRLSPQFYNLLVRKYDRF------GGGRIDFDDFIQCCVV- 188 (221)
T ss_pred HHHHHHHHhcccCCC-CcccHHHHHHHHHHc-------CcCCCHHHHHHHHHHhccc------cCCceeHHHHHHHHHH-
Confidence 33348999 99 999 9999999999 8765 4569999999999999977 5899999999443322
Q ss_pred HHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCccc
Q 025784 92 ITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVC 144 (248)
Q Consensus 92 l~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS 144 (248)
-. .+-.+|+.+|++..|.|+
T Consensus 189 ----------------------------L~-----~lt~~Fr~~D~~q~G~i~ 208 (221)
T KOG0037|consen 189 ----------------------------LQ-----RLTEAFRRRDTAQQGSIT 208 (221)
T ss_pred ----------------------------HH-----HHHHHHHHhccccceeEE
Confidence 12 267899999999999864
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=97.96 E-value=2.4e-05 Score=57.25 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=53.9
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCC-cccCHHHHHHHHHH
Q 025784 130 NLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGE-EELGQAQFTELLRQ 196 (248)
Q Consensus 130 ~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~D-G~Id~eEF~~lm~k 196 (248)
.+|..||.++.|.+....|...|..++.. .| ..+.++++.++.|.++. |.|+++.|+..|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~--~p---~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR--SP---EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC--CC---cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999887621 23 25579999999999988 99999999999986
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.94 E-value=1.3e-05 Score=64.62 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=48.7
Q ss_pred hHhhcccccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHH
Q 025784 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (248)
Q Consensus 13 ~i~~L~~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (248)
....+.-.|. +| |+| |.||.+||.++. +..+++.+.++++.+|.| ++|.||++||..-+
T Consensus 46 ~~~~l~w~F~~lD~d~D-G~Ls~~EL~~~~----------l~~~e~~~~~f~~~~D~n------~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYD-GKLSHHELAPIR----------LDPNEHCIKPFFESCDLD------KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCC-CcCCHHHHHHHH----------ccchHHHHHHHHHHHCCC------CCCCCCHHHHHHHH
Confidence 3455667899 99 999 999999999953 234577889999999999 79999999995544
No 58
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.92 E-value=3.3e-05 Score=58.01 Aligned_cols=70 Identities=7% Similarity=0.069 Sum_probs=54.2
Q ss_pred hhHhhcccccc-CC-C--CCCCccCHHHHHH-HHH-hcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHH
Q 025784 12 TQLRSLSQPLA-LP-T--SDSSTVTGAQLLD-FAE-NEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (248)
Q Consensus 12 ~~i~~L~~~F~-lD-d--~d~G~ls~~EL~~-l~~-~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (248)
.++..|.++|. +| . ++ |.||.+||+. +.. ++.. ++.+....++..+++.+|.+ ++|.|+|+||.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~~---~~~~~~~~ei~~i~~~~d~~------~~g~I~f~eF~ 74 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPNF---LKNQKDPEAVDKIMKDLDVN------KDGKVDFQEFL 74 (88)
T ss_pred HHHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhhh---ccCCCCHHHHHHHHHHhccC------CCCcCcHHHHH
Confidence 46888889999 99 3 77 9999999999 543 2211 11223478899999999999 79999999998
Q ss_pred HHHHHH
Q 025784 86 KLASDY 91 (248)
Q Consensus 86 ~~l~~i 91 (248)
..+...
T Consensus 75 ~~~~~~ 80 (88)
T cd00213 75 VLIGKL 80 (88)
T ss_pred HHHHHH
Confidence 877764
No 59
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.88 E-value=6.6e-05 Score=72.75 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=103.6
Q ss_pred cccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIA 96 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA 96 (248)
-.|- || |+| |.|++++|..+.. --+..-+++.|+.++..+- ..-.+|.+||.+|.-.+ +|
T Consensus 282 ~kFweLD~Dhd-~lidk~~L~ry~d---------~tlt~~ivdRIFs~v~r~~--~~~~eGrmdykdFv~Fi------lA 343 (493)
T KOG2562|consen 282 CKFWELDTDHD-GLIDKEDLKRYGD---------HTLTERIVDRIFSQVPRGF--TVKVEGRMDYKDFVDFI------LA 343 (493)
T ss_pred HHHhhhccccc-cccCHHHHHHHhc---------cchhhHHHHHHHhhccccc--eeeecCcccHHHHHHHH------HH
Confidence 3477 99 999 9999999999753 1245678999999666442 22258899999994432 33
Q ss_pred hhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC---cccCCCCCCChHHHHHH
Q 025784 97 DELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMG---VEFGVPPFSEFPQLNDI 173 (248)
Q Consensus 97 ~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lg---v~~Glpp~~~~~~~~~i 173 (248)
.+-++. ...++=.|+-+|.+++|.|+..||+-+.+... ..+|..|..=.....+|
T Consensus 344 ~e~k~t----------------------~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi 401 (493)
T KOG2562|consen 344 EEDKDT----------------------PASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQI 401 (493)
T ss_pred hccCCC----------------------ccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 333332 22588899999999999999999997765432 12344333323467888
Q ss_pred HHHhCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Q 025784 174 LKKHGAEGEEELGQAQFTELLRQVLQDIVDALA 206 (248)
Q Consensus 174 ~~e~D~d~DG~Id~eEF~~lm~kil~~~A~~L~ 206 (248)
+..+..-..++|+.+.|+. .+.-..|++.|=
T Consensus 402 ~DMvkP~~~~kItLqDlk~--skl~~~v~n~l~ 432 (493)
T KOG2562|consen 402 RDMVKPEDENKITLQDLKG--SKLAGTVFNILF 432 (493)
T ss_pred HHHhCccCCCceeHHHHhh--ccccchhhhhhc
Confidence 8888878899999999997 666666666553
No 60
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.87 E-value=2.7e-05 Score=51.88 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=47.5
Q ss_pred ccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 18 SQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 18 ~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
...|. +| +++ |.|+..|++. +.. +|.+.+...+..++..++.+ ++|.|++.||...
T Consensus 3 ~~~f~~~d~~~~-g~l~~~e~~~~l~~-------~~~~~~~~~~~~~~~~~~~~------~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGD-GTISADELKAALKS-------LGEGLSEEEIDEMIREVDKD------GDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCC-CcCcHHHHHHHHHH-------hCCCCCHHHHHHHHHHhCCC------CCCeEeHHHHHHH
Confidence 45688 99 999 9999999999 654 34567888999999999999 6999999999553
No 61
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.86 E-value=0.00013 Score=70.36 Aligned_cols=139 Identities=13% Similarity=0.162 Sum_probs=95.9
Q ss_pred hcccccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCC---------hhhHHHHHHhhcCCCCCcccccccccHHHH
Q 025784 16 SLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLP---------QNLKSTALKHISGSDDDVTFRIKEFDRDHA 84 (248)
Q Consensus 16 ~L~~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~---------~~~~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (248)
++.=.|+ +| |++ |.|+++|+..++.+-.++..+|+... ..++...+...-.+.+ ++++++++||
T Consensus 234 ~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~r----g~~kLs~deF 308 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKR----GNGKLSIDEF 308 (489)
T ss_pred cceeeeeeeecCCC-CcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccC----CCccccHHHH
Confidence 3446799 99 999 99999999997776666666776322 2245555555443322 7999999999
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCC
Q 025784 85 SKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPF 164 (248)
Q Consensus 85 ~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~ 164 (248)
.+-+.+. -+..+.-=|..+|...+|.||.......|-... |++-.
T Consensus 309 ~~F~e~L--------------------------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a---~~n~~ 353 (489)
T KOG2643|consen 309 LKFQENL--------------------------------QEEILELEFERFDKGDSGAISEVDFAELLLAYA---GVNSK 353 (489)
T ss_pred HHHHHHH--------------------------------HHHHHHHHHHHhCcccccccCHHHHHHHHHHHc---ccchH
Confidence 6666552 122467779999999999999999888774432 33211
Q ss_pred CChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 165 SEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 165 ~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
.-...+.++-++++.+ +..||++||++..+
T Consensus 354 ~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 354 KKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred hHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 0011366777788776 67799999998765
No 62
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.86 E-value=8e-05 Score=71.43 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=52.5
Q ss_pred CCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHH
Q 025784 119 GNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (248)
Q Consensus 119 ~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil 198 (248)
+.-..|+..+..+|+.+|.|+||.|+.+|+.. .+.+|+.+|.|+||.|+++||.+.++...
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 34445888899999999999999999999841 35789999999999999999999988654
No 63
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.77 E-value=0.00013 Score=63.51 Aligned_cols=102 Identities=10% Similarity=0.177 Sum_probs=76.0
Q ss_pred cccc-CC-CCCCCc-cCHHHHHH-HHHhcccccccCCCCC-hhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSST-VTGAQLLD-FAENEASSSLFGLSLP-QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (248)
Q Consensus 19 ~~F~-lD-d~d~G~-ls~~EL~~-l~~~~~~~~~~g~~~~-~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~ 93 (248)
+++. ++ +++ |. |+.+|... +.. |-..-+ ..-..-+++-+|.+ ++|.|+.+|+.+.++.++.
T Consensus 70 rI~~~f~~~~~-~~~v~F~~Fv~~ls~-------f~~~~~~~~Kl~faF~vYD~~------~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 70 RIIDRFDTDGN-GDPVDFEEFVRLLSV-------FSPKASKREKLRFAFRVYDLD------GDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHHHHhccCC-CCccCHHHHHHHHhh-------hcCCccHHHHHHHHHHHhcCC------CCCcCcHHHHHHHHHHHHc
Confidence 5677 77 777 66 99999999 543 222233 33677889999999 7999999999887777411
Q ss_pred HHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 025784 94 AIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHM 155 (248)
Q Consensus 94 ~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~l 155 (248)
+ .... .++.-+..++.+|.+.|.|+||+||.+|.++++.+.
T Consensus 136 ~------------------~~~~---~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 136 E------------------NDDM---SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred c------------------CCcc---hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 0 0000 133366789999999999999999999999999874
No 64
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.75 E-value=2.9e-05 Score=47.83 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHh-ccC
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALG-HMG 156 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~-~lg 156 (248)
+..+|+.+|.|++|+||.+|++.+|. ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 68899999999999999999999998 454
No 65
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.73 E-value=8.7e-05 Score=57.57 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=53.2
Q ss_pred hHhhcccccc-CCCCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHH
Q 025784 13 QLRSLSQPLA-LPTSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDY 91 (248)
Q Consensus 13 ~i~~L~~~F~-lDd~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~i 91 (248)
-|..|..+|. .- +++|+||+.||+.|....... .++-..-+..++.+|+.+|.| +||+|++.||...+-.+
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~-~l~~~~d~~~vd~im~~LD~n------~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSE-FLKNQNDPMAVDKIMKDLDDC------RDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHH-HHcCCCCHHHHHHHHHHhCCC------CCCcCcHHHHHHHHHHH
Confidence 3566777888 76 445899999999965433221 122233367899999999999 79999999998877775
Q ss_pred HH
Q 025784 92 IT 93 (248)
Q Consensus 92 l~ 93 (248)
..
T Consensus 78 ~~ 79 (91)
T cd05024 78 LI 79 (91)
T ss_pred HH
Confidence 33
No 66
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00022 Score=68.49 Aligned_cols=77 Identities=14% Similarity=0.324 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHH
Q 025784 125 TMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDA 204 (248)
Q Consensus 125 ~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A~~ 204 (248)
+..+..+|++||.+++|.+..++|.+.|..+. .| .........+|+..|.|.||.|||+||+..+..-=+.+++.
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~----~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD----HP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcC----CC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHH
Confidence 44689999999999999999999999998874 33 22345677889999999999999999999988655555554
Q ss_pred hc
Q 025784 205 LA 206 (248)
Q Consensus 205 L~ 206 (248)
.+
T Consensus 88 F~ 89 (463)
T KOG0036|consen 88 FQ 89 (463)
T ss_pred Hh
Confidence 43
No 67
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.60 E-value=0.00027 Score=55.95 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=60.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALA 206 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A~~L~ 206 (248)
.-.++|..+|. ++|+||-+..+++|.+ .|+| ..++..|..-.|.|+||.++++||+-.|+=|-..+...+.
T Consensus 11 ~y~~~F~~l~~-~~g~isg~~a~~~f~~----S~L~----~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~ 81 (104)
T PF12763_consen 11 KYDQIFQSLDP-QDGKISGDQAREFFMK----SGLP----RDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGK 81 (104)
T ss_dssp HHHHHHHCTSS-STTEEEHHHHHHHHHH----TTSS----HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC-CCCeEeHHHHHHHHHH----cCCC----HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCC
Confidence 46789999996 5899999999999977 4776 7789999999999999999999999999988776665554
Q ss_pred cCC
Q 025784 207 DKH 209 (248)
Q Consensus 207 ~~P 209 (248)
.-|
T Consensus 82 ~lP 84 (104)
T PF12763_consen 82 PLP 84 (104)
T ss_dssp ---
T ss_pred CCc
Confidence 444
No 68
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.52 E-value=9.5e-05 Score=43.87 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHH
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNAL 152 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al 152 (248)
++++|+.+|.|+||+||.+|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999999999999753
No 69
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.34 E-value=0.00065 Score=53.77 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=61.2
Q ss_pred chhhHhhcccccc-CCCCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 10 DGTQLRSLSQPLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 10 dg~~i~~L~~~F~-lDd~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
.-.|.....+.|. +|.++ |.||.++.++ ++.+ ++|...+..|-+-.|.+ ++|.++++||.-.
T Consensus 5 s~~e~~~y~~~F~~l~~~~-g~isg~~a~~~f~~S---------~L~~~~L~~IW~LaD~~------~dG~L~~~EF~iA 68 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDPQD-GKISGDQAREFFMKS---------GLPRDVLAQIWNLADID------NDGKLDFEEFAIA 68 (104)
T ss_dssp SCCHHHHHHHHHHCTSSST-TEEEHHHHHHHHHHT---------TSSHHHHHHHHHHH-SS------SSSEEEHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC-CeEeHHHHHHHHHHc---------CCCHHHHHHHHhhhcCC------CCCcCCHHHHHHH
Confidence 3467788889999 99778 9999999999 8764 58999999999999999 7999999999888
Q ss_pred HHHHHHHHHhhccC
Q 025784 88 ASDYITAIADELKD 101 (248)
Q Consensus 88 l~~il~~iA~~L~~ 101 (248)
|+-|-..++-.+..
T Consensus 69 m~Li~~~~~~~~~~ 82 (104)
T PF12763_consen 69 MHLINRKLNGNGKP 82 (104)
T ss_dssp HHHHHHHHHHTTS-
T ss_pred HHHHHHHhcCCCCC
Confidence 87765555443333
No 70
>PF14658 EF-hand_9: EF-hand domain
Probab=97.34 E-value=0.00066 Score=49.69 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=49.8
Q ss_pred ccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHH
Q 025784 20 PLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (248)
Q Consensus 20 ~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (248)
.|. .| ++. |.+...+|.. |..++. .+.++.+++.+.+++|.+| ++|.|+++.|...|+.
T Consensus 3 ~F~~fD~~~t-G~V~v~~l~~~Lra~~~------~~p~e~~Lq~l~~elDP~g-----~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKT-GRVPVSDLITYLRAVTG------RSPEESELQDLINELDPEG-----RDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCC-ceEeHHHHHHHHHHHcC------CCCcHHHHHHHHHHhCCCC-----CCceEeHHHHHHHHHH
Confidence 589 99 888 9999999999 544432 2567899999999999995 5699999999988876
No 71
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.33 E-value=0.00021 Score=42.43 Aligned_cols=25 Identities=20% Similarity=0.563 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCCCcccCHHHHHHHH
Q 025784 170 LNDILKKHGAEGEEELGQAQFTELL 194 (248)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm 194 (248)
++.+|+.+|.|+||.||++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3578999999999999999999865
No 72
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.32 E-value=0.0002 Score=64.95 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=85.0
Q ss_pred hhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHH
Q 025784 15 RSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDY 91 (248)
Q Consensus 15 ~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~i 91 (248)
|.|..+|+ .| |-| |+||..|+++ +++-.+. ||- -+.++-.--+..+|.| ++|.|+++||.-.+...
T Consensus 101 rklmviFsKvDVNtD-rkisAkEmqrwImektaE--Hfq--eameeSkthFraVDpd------gDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTD-RKISAKEMQRWIMEKTAE--HFQ--EAMEESKTHFRAVDPD------GDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHhhcccCcc-ccccHHHHHHHHHHHHHH--HHH--HHHhhhhhheeeeCCC------CCCceehhhhhhHHHhh
Confidence 45668899 99 999 9999999999 7653322 111 0111222335567777 79999999996554211
Q ss_pred ------HHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCcccCCCCC
Q 025784 92 ------ITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEG-KVCKGEIQNALGHMGVEFGVPPF 164 (248)
Q Consensus 92 ------l~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG-~LS~~EL~~al~~lgv~~Glpp~ 164 (248)
=.+.|-.|.+.. .+| +..+.|...+...+-+.|...-. .|+..|...+|----...|+
T Consensus 170 kghsekevadairlneel----kVD--------eEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmL--- 234 (362)
T KOG4251|consen 170 KGHSEKEVADAIRLNEEL----KVD--------EETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGML--- 234 (362)
T ss_pred cCcchHHHHHHhhccCcc----ccc--------HHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhH---
Confidence 012333333311 112 11222333444555555554322 34546655444110000011
Q ss_pred CChHHHHHHHHHhCCCCCcccCHHHHHHH
Q 025784 165 SEFPQLNDILKKHGAEGEEELGQAQFTEL 193 (248)
Q Consensus 165 ~~~~~~~~i~~e~D~d~DG~Id~eEF~~l 193 (248)
-..+++|+...|.|+|..+|+.||..+
T Consensus 235 --rfmVkeivrdlDqdgDkqlSvpeFisl 261 (362)
T KOG4251|consen 235 --RFMVKEIVRDLDQDGDKQLSVPEFISL 261 (362)
T ss_pred --HHHHHHHHHHhccCCCeeecchhhhcC
Confidence 224677888899999999999999854
No 73
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.31 E-value=0.00036 Score=55.82 Aligned_cols=102 Identities=10% Similarity=0.191 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCeEEEEeccc---hhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC
Q 025784 80 DRDHASKLASDYITAIADELKDDPLVVCVLDGN---MLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMG 156 (248)
Q Consensus 80 ~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs---~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lg 156 (248)
..++|..-|.+.+..+...+...+..- ++. ..+............+.=.|.++|.|+||.|++.||++....+
T Consensus 8 e~~~F~~RL~dWf~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l- 83 (113)
T PF10591_consen 8 ELSQFPRRLLDWFKNLMEQSKSRDELS---DHYIELLKRDESSSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL- 83 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCC---SS-HHHHHHHHHHTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc---cccccccccccccchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-
Confidence 467777777777777655544422110 000 0011112223344578888999999999999999999754333
Q ss_pred cccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHH
Q 025784 157 VEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTE 192 (248)
Q Consensus 157 v~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~ 192 (248)
+|+ ..=+...++.+|.|+||.||..|+..
T Consensus 84 ----~~~---e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 84 ----MPP---EHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp ----STT---GGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred ----hhh---HHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 231 22367789999999999999999864
No 74
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0017 Score=62.92 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=92.6
Q ss_pred CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccC
Q 025784 23 LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKD 101 (248)
Q Consensus 23 lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~ 101 (248)
++ +.+ |-||.+|-.=|.-+ ++.|+.-..=+++-||.| +||.|+.+||..+.+-++. +
T Consensus 208 ~~lg~~-GLIsfSdYiFLlTl--------LS~p~~~F~IAFKMFD~d------gnG~IdkeEF~~v~~li~s-------Q 265 (489)
T KOG2643|consen 208 YKLGES-GLISFSDYIFLLTL--------LSIPERNFRIAFKMFDLD------GNGEIDKEEFETVQQLIRS-------Q 265 (489)
T ss_pred EEcCCC-CeeeHHHHHHHHHH--------HccCcccceeeeeeeecC------CCCcccHHHHHHHHHHHHh-------c
Confidence 45 556 99999997773222 357777777789999999 7999999999766655422 2
Q ss_pred CCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCC
Q 025784 102 DPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEG 181 (248)
Q Consensus 102 ~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~ 181 (248)
..+-+...|+ ++.-..-+-.++..+...| |-++++|+||.+|.++++++|. .+..+-=|.++|...
T Consensus 266 ~~~g~~hrd~--~tt~~s~~~~~nsaL~~yF--FG~rg~~kLs~deF~~F~e~Lq----------~Eil~lEF~~~~~~~ 331 (489)
T KOG2643|consen 266 TSVGVRHRDH--FTTGNSFKVEVNSALLTYF--FGKRGNGKLSIDEFLKFQENLQ----------EEILELEFERFDKGD 331 (489)
T ss_pred cccceecccC--ccccceehhhhhhhHHHHh--hccCCCccccHHHHHHHHHHHH----------HHHHHHHHHHhCccc
Confidence 2223333333 1111111112333444444 6888999999999999998873 223344488999988
Q ss_pred CcccCHHHHHHHHH
Q 025784 182 EEELGQAQFTELLR 195 (248)
Q Consensus 182 DG~Id~eEF~~lm~ 195 (248)
.|.|+...|..+|-
T Consensus 332 ~g~Ise~DFA~~lL 345 (489)
T KOG2643|consen 332 SGAISEVDFAELLL 345 (489)
T ss_pred ccccCHHHHHHHHH
Confidence 89999999998874
No 75
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00063 Score=55.28 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=50.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCc--ccCC--CCCCChH----HHHHHHHHhCCCCCcccCHHHHHHH
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALGHMGV--EFGV--PPFSEFP----QLNDILKKHGAEGEEELGQAQFTEL 193 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~~lgv--~~Gl--pp~~~~~----~~~~i~~e~D~d~DG~Id~eEF~~l 193 (248)
--.-|++.|-|++|+|.-=||.+|+...-. +.|- ||.++.. .++.|++.-|.|+||-|||.||.+-
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 456799999999999999999999876543 2342 3433333 2677888889999999999999863
No 76
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.14 E-value=0.0018 Score=54.93 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=47.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ki 197 (248)
+.+.+|..+|.|+||.|.++.|+..|.++|.. | ..+.++.|+++. .|+|+|.-|+.|+-+-
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~----~--~d~elDaM~~Ea----~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI----A--SDEELDAMMKEA----PGPINFTVFLTMFGEK 93 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCCC----C--CHHHHHHHHHhC----CCCeeHHHHHHHHHHH
Confidence 57899999999999999999999999998742 1 255677777663 4577777777776543
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.91 E-value=0.011 Score=58.35 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=96.4
Q ss_pred hhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 11 GTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 11 g~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
-.|+|+.--.+. .+ ++. -..|++.... +.. |++.+-+......++..++.-- +||-|||.||..
T Consensus 32 ~~eLr~if~~~as~e~~ge-~~mt~edFv~~ylg------L~~e~~~n~~~v~Lla~iaD~t-----KDglisf~eF~a- 98 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGE-SYMTPEDFVRRYLG------LYNESNFNDKIVRLLASIADQT-----KDGLISFQEFRA- 98 (694)
T ss_pred hHHHHHHHHHHhHHhhccc-cccCHHHHHHHHHh------hcccccCChHHHHHHHhhhhhc-----ccccccHHHHHH-
Confidence 345555554455 66 666 7778887777 532 3445555555556666554321 799999999932
Q ss_pred HHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCCh
Q 025784 88 ASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEF 167 (248)
Q Consensus 88 l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~ 167 (248)
. ..++=.++ ..-..+|+-||+.++|.+|.++.+.++++...++.+|-.-+.
T Consensus 99 -------f-------------------e~~lC~pD---al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~ 149 (694)
T KOG0751|consen 99 -------F-------------------ESVLCAPD---ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDS 149 (694)
T ss_pred -------H-------------------HhhccCch---HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCc
Confidence 1 12222232 246789999999999999999999999998877777654443
Q ss_pred HHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHH
Q 025784 168 PQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIV 202 (248)
Q Consensus 168 ~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A 202 (248)
+-+.- -|..+..--++|.||.+++.+.-+.=|
T Consensus 150 efI~~---~Fg~~~~r~~ny~~f~Q~lh~~~~E~~ 181 (694)
T KOG0751|consen 150 EFIKL---HFGDIRKRHLNYAEFTQFLHEFQLEHA 181 (694)
T ss_pred chHHH---HhhhHHHHhccHHHHHHHHHHHHHHHH
Confidence 33222 245555666899999999887654433
No 78
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=96.88 E-value=0.0015 Score=54.48 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=48.2
Q ss_pred hHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHH
Q 025784 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (248)
Q Consensus 13 ~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (248)
+...+++-++ +| +++ |+|..+||+. |.-+| -.+.+.+++.++.-.-.. +|.|+|+.|.+
T Consensus 86 t~edfvegLrvFDkeg~-G~i~~aeLRhvLttlG-------ekl~eeEVe~Llag~eD~-------nG~i~YE~fVk 147 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGN-GTIMGAELRHVLTTLG-------EKLTEEEVEELLAGQEDS-------NGCINYEAFVK 147 (152)
T ss_pred cHHHHHHHHHhhcccCC-cceeHHHHHHHHHHHH-------hhccHHHHHHHHcccccc-------CCcCcHHHHHH
Confidence 4556667788 99 999 9999999999 87765 448899999999875444 89999999943
No 79
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.85 E-value=0.0014 Score=57.96 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=54.4
Q ss_pred hhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHH
Q 025784 12 TQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (248)
Q Consensus 12 ~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (248)
.+|..+...|+ +| +.| |.|+.-||+- +-++|+.++|+| ...+|.++|-| .+|.|++-||.=.+
T Consensus 96 kqIk~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLgapQTHL~-------lK~mikeVded------~dgklSfreflLIf 161 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRD-GFIDLMELKRMMEKLGAPQTHLG-------LKNMIKEVDED------FDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhCCchhhHH-------HHHHHHHhhcc------cccchhHHHHHHHH
Confidence 46777779999 99 999 9999999999 667776665655 66899999999 79999999996666
Q ss_pred HH
Q 025784 89 SD 90 (248)
Q Consensus 89 ~~ 90 (248)
+.
T Consensus 162 rk 163 (244)
T KOG0041|consen 162 RK 163 (244)
T ss_pred HH
Confidence 55
No 80
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.83 E-value=0.0013 Score=40.36 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 170 LNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
+..+|+.+|.|+||.|+.+||..+|++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 678999999999999999999999986
No 81
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.79 E-value=0.0017 Score=63.16 Aligned_cols=66 Identities=5% Similarity=-0.048 Sum_probs=55.3
Q ss_pred cccccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHH
Q 025784 17 LSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDY 91 (248)
Q Consensus 17 L~~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~i 91 (248)
|..+|. +| |++ |.||.+|+++..++-++ +.-..+.+.++.++-+.+|.| +||.|+..||++.++-+
T Consensus 549 LetiF~~iD~D~S-G~isldEF~~a~~l~~s--h~~~~i~~~~i~~la~~mD~N------kDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 549 LETIFNIIDADNS-GEISLDEFRTAWKLLSS--HMNGAISDDEILELARSMDLN------KDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHhccCCC-CceeHHHHHHHHHHHHh--hcCCCcCHHHHHHHHHhhccC------CCCcccHHHHHHHHhhh
Confidence 448899 99 999 99999999995444322 555678899999999999999 89999999999988754
No 82
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.78 E-value=0.0034 Score=62.05 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=57.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~ 200 (248)
.+.+.|..+| |++|+++..+|.++|.+.+.-.|- -..+.+++++.+.+.|.+|+|++|||...+..+.-.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~---~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGY---FVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccc---hhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 5889999999 899999999999999987543221 124468889999999999999999999977765544
No 83
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.72 E-value=0.0062 Score=66.20 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=79.8
Q ss_pred chhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHH
Q 025784 10 DGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (248)
Q Consensus 10 dg~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (248)
..+.+.+|.-.|+ +| +.+ |.|+..++.. |..+|..--...-+-|++....+|.-+|.+ ++|.|+..+|..
T Consensus 2248 tEe~L~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~------r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPN------RDGYVSLQDYMA 2320 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhc-cCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCC------CcCcccHHHHHH
Confidence 3567888889999 99 999 9999999999 655443300111244567899999999999 899999999944
Q ss_pred HHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 025784 87 LASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNAL 152 (248)
Q Consensus 87 ~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al 152 (248)
-|-. .. -...+.++ .++.+|+.+|. +.-++++.++...|
T Consensus 2321 fmi~----------~E-----------TeNI~s~~-----eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2321 FMIS----------KE-----------TENILSSE-----EIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred HHHh----------cc-----------cccccchH-----HHHHHHHHhhc-CCccccHHHHHhcC
Confidence 4322 21 12224344 49999999999 67899999987433
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.55 E-value=0.0066 Score=42.31 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=39.1
Q ss_pred cccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHH
Q 025784 142 KVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (248)
Q Consensus 142 ~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ki 197 (248)
++|-.|++..|..++++. +......+|+++|..++|.++.+||.+..+..
T Consensus 1 kmsf~Evk~lLk~~NI~~------~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM------DDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc------CHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 468899999999987753 35567789999999999999999999987753
No 85
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.28 E-value=0.0014 Score=52.48 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=39.9
Q ss_pred cccccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHH
Q 025784 17 LSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (248)
Q Consensus 17 L~~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (248)
+.=.|. || |+| |.|+..||.++... +..+++=+.+.++..|.| +||.||..|+.
T Consensus 56 ~~W~F~~LD~n~d-~~L~~~El~~l~~~--------l~~~e~C~~~F~~~CD~n------~d~~Is~~EW~ 111 (113)
T PF10591_consen 56 VHWKFCQLDRNKD-GVLDRSELKPLRRP--------LMPPEHCARPFFRSCDVN------KDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHH--T-S-SEE-TTTTGGGGST--------TSTTGGGHHHHHHHH-TT-------SSSEEHHHHH
T ss_pred hhhhHhhhcCCCC-CccCHHHHHHHHHH--------HhhhHHHHHHHHHHcCCC------CCCCCCHHHHc
Confidence 335699 99 999 99999999995321 245677799999999999 79999999983
No 86
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.076 Score=54.95 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=111.6
Q ss_pred ccc-CCCCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHh
Q 025784 20 PLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIAD 97 (248)
Q Consensus 20 ~F~-lDd~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~ 97 (248)
.|. |--+. |.||..+-+. +..+ +||...+.+|-...|.| .||..+.-||+=.|+-|.+.++-
T Consensus 21 qF~~Lkp~~-gfitg~qArnfflqS---------~LP~~VLaqIWALsDld------kDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 21 QFGQLKPGQ-GFITGDQARNFFLQS---------GLPTPVLAQIWALSDLD------KDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred HHhccCCCC-CccchHhhhhhHHhc---------CCChHHHHHHHHhhhcC------ccccchHHHHHHHHHHHHHHhcC
Confidence 466 66667 9999999999 7664 59999999999999999 79999999999999988777652
Q ss_pred ----------hccCCC--------------------------------------eEEE---------Eecc-------ch
Q 025784 98 ----------ELKDDP--------------------------------------LVVC---------VLDG-------NM 113 (248)
Q Consensus 98 ----------~L~~~p--------------------------------------ivv~---------~lDG-------s~ 113 (248)
-|+..| +.|+ +-+| +.
T Consensus 85 ~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~sp 164 (1118)
T KOG1029|consen 85 IQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSP 164 (1118)
T ss_pred CcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence 222222 2222 2244 33
Q ss_pred hhh---h-cCCc--------------chhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHH
Q 025784 114 LKL---F-LGNE--------------DDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILK 175 (248)
Q Consensus 114 l~~---f-l~de--------------~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~ 175 (248)
+.. + ..-+ ..-.-....+|..+|+..+|+||-..-|.+|.+ .|+| ..++-.|--
T Consensus 165 l~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q----S~Lp----q~~LA~IW~ 236 (1118)
T KOG1029|consen 165 LPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQ----SGLP----QNQLAHIWT 236 (1118)
T ss_pred CCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHh----cCCc----hhhHhhhee
Confidence 211 0 0000 000123578999999999999999999999977 3676 456667766
Q ss_pred HhCCCCCcccCHHHHHHHHHHHH
Q 025784 176 KHGAEGEEELGQAQFTELLRQVL 198 (248)
Q Consensus 176 e~D~d~DG~Id~eEF~~lm~kil 198 (248)
--|.|+||+++-+||.--|-=+-
T Consensus 237 LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 237 LSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred eeccCCCCcccHHHHHHHHHHHH
Confidence 77999999999999986665443
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.08 E-value=0.012 Score=56.54 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=49.6
Q ss_pred cCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHH
Q 025784 49 FGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLA 128 (248)
Q Consensus 49 ~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~ 128 (248)
.|...-...+..+++.+|.+ ++|.|+++||.. +
T Consensus 327 ~~~~~~~~~l~~aF~~~D~d------gdG~Is~~E~~~-----------------------------------------~ 359 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLD------GDGFITREEWLG-----------------------------------------S 359 (391)
T ss_pred hccChhhHHHHHHHHHhCCC------CCCcCcHHHHHH-----------------------------------------H
Confidence 34455577889999999999 799999999910 4
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhc
Q 025784 129 ENLFADLDTEDEGKVCKGEIQNALGH 154 (248)
Q Consensus 129 ~~~F~~lD~D~dG~LS~~EL~~al~~ 154 (248)
..+|+.+|.|+||+||.+|++.++..
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 67899999999999999999988754
No 88
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.08 E-value=0.01 Score=58.77 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=61.6
Q ss_pred echhhHhhcccccc-CCCCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHH
Q 025784 9 IDGTQLRSLSQPLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (248)
Q Consensus 9 ldg~~i~~L~~~F~-lDd~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (248)
+--.|+++|...|. +||++ |++|..||.+ +.+.+.. .-....+++..++...+.| .+|.|+++||..
T Consensus 13 ~tq~El~~l~~kF~~~d~~~-G~v~~~~l~~~f~k~~~~----~g~~~~eei~~~l~~~~~~------~~g~v~fe~f~~ 81 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLDDQK-GYVTVYELPDAFKKAKLP----LGYFVREEIKEILGEVGVD------ADGRVEFEEFVG 81 (627)
T ss_pred ccHHHHHHHHHHHHhhcCCC-CeeehHHhHHHHHHhccc----ccchhHHHHHHHHhccCCC------cCCccCHHHHHH
Confidence 45679999999999 99888 9999999999 8776533 1123477899999999999 799999999988
Q ss_pred HHHHHHHHH
Q 025784 87 LASDYITAI 95 (248)
Q Consensus 87 ~l~~il~~i 95 (248)
.+..+...-
T Consensus 82 ~~~~l~s~~ 90 (627)
T KOG0046|consen 82 IFLNLKSKD 90 (627)
T ss_pred HHHhhhhhh
Confidence 776665543
No 89
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.01 E-value=0.0085 Score=33.55 Aligned_cols=27 Identities=19% Similarity=0.539 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 170 LNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
+..+|+.+|.+++|.|++.||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999999875
No 90
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.42 E-value=0.022 Score=31.74 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhc
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALGH 154 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~~ 154 (248)
+..+|+.+|.+++|.|+..+++.++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999999999999999988754
No 91
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.05 Score=44.41 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=40.3
Q ss_pred cccc-CC-CCCCCccCHHHHHH-HHHhccc--ccccCCCCC-hh----hHHHHHHhhcCCCCCcccccccccHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEAS--SSLFGLSLP-QN----LKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~--~~~~g~~~~-~~----~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (248)
.-|+ =| |++ |.|..=||.. +.+.... +-+--.++| +. .++.+++.-|.| ++|.|+|.||+.
T Consensus 71 HYF~MHDldkn-n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN------~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKN-NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFN------GDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcC-CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccC------CCceeeHHHHHh
Confidence 5688 78 999 9999999999 7765431 101112333 23 355555555555 799999999944
No 92
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.20 E-value=0.047 Score=59.77 Aligned_cols=88 Identities=13% Similarity=0.274 Sum_probs=65.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCC-CCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVP-PFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALA 206 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glp-p~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A~~L~ 206 (248)
..-+|++||.+++|.|.+.+.+..|..+|=.+.|- .-...+...+++.-+|.+.+|-|+..+|...|-+-
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~--------- 2325 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK--------- 2325 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc---------
Confidence 55789999999999999999999999987433111 01114578999999999999999999999988531
Q ss_pred cCCeEEEeccccccChhHHHHHhch
Q 025784 207 DKHIIIIPNIKIIDGSKLRMVIQHL 231 (248)
Q Consensus 207 ~~PV~v~~~~~~~dGs~l~~~l~~~ 231 (248)
-++||-+...|..++.+-
T Consensus 2326 -------ETeNI~s~~eIE~AfraL 2343 (2399)
T KOG0040|consen 2326 -------ETENILSSEEIEDAFRAL 2343 (2399)
T ss_pred -------ccccccchHHHHHHHHHh
Confidence 255555555555555443
No 93
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.06 E-value=0.048 Score=51.49 Aligned_cols=101 Identities=9% Similarity=0.098 Sum_probs=73.8
Q ss_pred hhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhh
Q 025784 56 NLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADL 135 (248)
Q Consensus 56 ~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~l 135 (248)
....+++..||.+ ++|.+||-|....+ +-|+. +..-...+.-+|+.|
T Consensus 259 d~l~~~f~LFde~------~tg~~D~re~v~~l--------avlc~-------------------p~~t~~iiq~afk~f 305 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG------TTGNGDYRETVKTL--------AVLCG-------------------PPVTPVIIQYAFKRF 305 (412)
T ss_pred hhhhhhhheecCC------CCCcccHHHHhhhh--------eeeeC-------------------CCCcHHHHHHHHHhc
Confidence 4678999999999 79999999983211 11222 222333688999999
Q ss_pred CCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 136 DTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 136 D~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
+.+-||.+..++|--+|+- ..|++.. .+..+|...+...+|+|++++|+.++..
T Consensus 306 ~v~eDg~~ge~~ls~ilq~---~lgv~~l----~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 306 SVAEDGISGEHILSLILQV---VLGVEVL----RVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred ccccccccchHHHHHHHHH---hcCccee----eccccchhhhcccCcceeHHHHHHHHHh
Confidence 9999999998887765543 3465422 2445788899999999999999988763
No 94
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.81 E-value=0.27 Score=48.82 Aligned_cols=112 Identities=18% Similarity=0.252 Sum_probs=78.9
Q ss_pred CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccC
Q 025784 23 LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKD 101 (248)
Q Consensus 23 lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~ 101 (248)
-| ..| |-||.+|.+.+.... =.|+..+..+++-||.. ++|++++++|.+.++.- .|..
T Consensus 83 aD~tKD-glisf~eF~afe~~l--------C~pDal~~~aFqlFDr~------~~~~vs~~~~~~if~~t------~l~~ 141 (694)
T KOG0751|consen 83 ADQTKD-GLISFQEFRAFESVL--------CAPDALFEVAFQLFDRL------GNGEVSFEDVADIFGQT------NLHH 141 (694)
T ss_pred hhhccc-ccccHHHHHHHHhhc--------cCchHHHHHHHHHhccc------CCCceehHHHHHHHhcc------cccc
Confidence 45 888 999999999853322 25788999999999999 69999999998877652 1111
Q ss_pred CCeEEEEeccchhhhhcCCcc-------hhH--------HHHHHHHhhhCCCCCCcccHHHHHHHHhccCc
Q 025784 102 DPLVVCVLDGNMLKLFLGNED-------DFT--------MLAENLFADLDTEDEGKVCKGEIQNALGHMGV 157 (248)
Q Consensus 102 ~pivv~~lDGs~l~~fl~de~-------~f~--------~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv 157 (248)
=+-.-.|++-++....+.+ .|. ....++|++-|+.++|.||.=..+..+.....
T Consensus 142 --~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~ 210 (694)
T KOG0751|consen 142 --HIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRI 210 (694)
T ss_pred --CCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhh
Confidence 1122345555554443332 122 23678999999999999998888887766543
No 95
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=94.11 E-value=0.13 Score=43.77 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=46.5
Q ss_pred Hhhcc--cccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhh----HHHHHHhhcCCCCCcccccccccHHHH
Q 025784 14 LRSLS--QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNL----KSTALKHISGSDDDVTFRIKEFDRDHA 84 (248)
Q Consensus 14 i~~L~--~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~----~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (248)
=|.|+ =.|+ .| |+| +.|....|.. +..+--. .+++.+ .+.++.+.|.| |+|.+++.||
T Consensus 105 PrdlK~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr~------eLs~eEv~~i~ekvieEAD~D------gDgkl~~~eF 171 (189)
T KOG0038|consen 105 PRDLKAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTRD------ELSDEEVELICEKVIEEADLD------GDGKLSFAEF 171 (189)
T ss_pred hHHhhhhheeEEeecCCC-CcccHHHHHHHHHHHhhc------cCCHHHHHHHHHHHHHHhcCC------CCCcccHHHH
Confidence 34444 5688 99 999 9999999999 7665332 466554 56788888999 7999999999
Q ss_pred HHH
Q 025784 85 SKL 87 (248)
Q Consensus 85 ~~~ 87 (248)
..+
T Consensus 172 e~~ 174 (189)
T KOG0038|consen 172 EHV 174 (189)
T ss_pred HHH
Confidence 443
No 96
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.90 E-value=0.25 Score=48.51 Aligned_cols=140 Identities=11% Similarity=0.157 Sum_probs=94.2
Q ss_pred cccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIA 96 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA 96 (248)
..|. ++ |.+ |.||...+..+..-+ +-+.....+++++.+++. +.+.+....|...|++. -
T Consensus 143 ~~f~k~~~d~~-g~it~~~Fi~~~~~~-------~~l~~t~~~~~v~~l~~~------~~~yl~q~df~~~Lqel----i 204 (493)
T KOG2562|consen 143 STFRKIDGDDT-GHITRDKFINYWMRG-------LMLTHTRLEQFVNLLIQA------GCSYLRQDDFKPYLQEL----I 204 (493)
T ss_pred hhhhhhccCcC-CceeHHHHHHHHHhh-------hhHHHHHHHHHHHHHhcc------CccceeccccHHHHHHH----H
Confidence 5688 99 999 999999999933222 335667788999999999 69999999998777664 2
Q ss_pred hhccCCCeEEEEeccchhhhhcCCcchhH-----HHHHHHHhhhCCCCCCcccHHHHHH-----HHhccCcccCCCCCCC
Q 025784 97 DELKDDPLVVCVLDGNMLKLFLGNEDDFT-----MLAENLFADLDTEDEGKVCKGEIQN-----ALGHMGVEFGVPPFSE 166 (248)
Q Consensus 97 ~~L~~~pivv~~lDGs~l~~fl~de~~f~-----~~~~~~F~~lD~D~dG~LS~~EL~~-----al~~lgv~~Glpp~~~ 166 (248)
+++. . .|+..+.+|. ..+..+|=.++.-++|+|+-.+|+. +|..+..+.-+++..
T Consensus 205 ~Thp-l-------------~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~- 269 (493)
T KOG2562|consen 205 ATHP-L-------------EFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVT- 269 (493)
T ss_pred hcCC-c-------------hhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhh-
Confidence 2222 1 1233344454 4688999999999999998888763 222222222232221
Q ss_pred hH-------HHHHHHHHhCCCCCcccCHHHHH
Q 025784 167 FP-------QLNDILKKHGAEGEEELGQAQFT 191 (248)
Q Consensus 167 ~~-------~~~~i~~e~D~d~DG~Id~eEF~ 191 (248)
.+ ++-..|-+.|.|+||-|+.++-+
T Consensus 270 ~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ 301 (493)
T KOG2562|consen 270 RYFSYEHFYVIYCKFWELDTDHDGLIDKEDLK 301 (493)
T ss_pred hheeHHHHHHHHHHHhhhccccccccCHHHHH
Confidence 11 11223567899999999988765
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.39 E-value=0.16 Score=37.53 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=49.6
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCC----CCcccCHHHHHHHHH
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAE----GEEELGQAQFTELLR 195 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d----~DG~Id~eEF~~lm~ 195 (248)
+..+|+.+-. +.+.+|.++++.+|.. ++|.+.. +...+..+|.++..+ ..+.++.+.|...|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~---eQ~~~~~-~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLRE---EQGEPRL-TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHH---TSS-TTS-SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHH---HhccccC-cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 7789999955 7899999999999976 4565444 477899999987554 468899999998874
No 98
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=91.96 E-value=0.45 Score=43.66 Aligned_cols=128 Identities=15% Similarity=0.129 Sum_probs=76.0
Q ss_pred CccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEE
Q 025784 29 STVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCV 108 (248)
Q Consensus 29 G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~ 108 (248)
-.+|..|...+.+-.-+ .+.-...+.+++..+|.| ++..+|..||.. . -|=.|.-
T Consensus 214 lllteeEflsFLHPEhS-----rgmLrfmVkeivrdlDqd------gDkqlSvpeFis----------l----pvGTVen 268 (362)
T KOG4251|consen 214 LLLTEEEFLSFLHPEHS-----RGMLRFMVKEIVRDLDQD------GDKQLSVPEFIS----------L----PVGTVEN 268 (362)
T ss_pred hhhhHHHHHHHcChHhh-----hhhHHHHHHHHHHHhccC------CCeeecchhhhc----------C----CCcchhh
Confidence 45566777763221111 111245788999999999 699999999922 1 0111122
Q ss_pred eccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHH
Q 025784 109 LDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQA 188 (248)
Q Consensus 109 lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~e 188 (248)
..|.++...--. .....-=..+|.++||..|.+||...+.-. .+..+......|+.--|.|+|..++.+
T Consensus 269 qqgqdiddnwvk-----dRkkEFeElIDsNhDGivTaeELe~y~dP~------n~~~alne~~~~ma~~d~n~~~~Ls~e 337 (362)
T KOG4251|consen 269 QQGQDIDDNWVK-----DRKKEFEELIDSNHDGIVTAEELEDYVDPQ------NFRLALNEVNDIMALTDANNDEKLSLE 337 (362)
T ss_pred hhccchHHHHHH-----HHHHHHHHHhhcCCccceeHHHHHhhcCch------hhhhhHHHHHHHHhhhccCCCcccCHH
Confidence 234444221101 112222234599999999999999764222 122234456778888899999999998
Q ss_pred HHHH
Q 025784 189 QFTE 192 (248)
Q Consensus 189 EF~~ 192 (248)
|..+
T Consensus 338 ell~ 341 (362)
T KOG4251|consen 338 ELLE 341 (362)
T ss_pred HHHH
Confidence 8654
No 99
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=90.84 E-value=0.87 Score=46.08 Aligned_cols=141 Identities=15% Similarity=0.206 Sum_probs=84.3
Q ss_pred hhHhhcccccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCC-CCcccccccccHHHHHHHH
Q 025784 12 TQLRSLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSD-DDVTFRIKEFDRDHASKLA 88 (248)
Q Consensus 12 ~~i~~L~~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~-~~~~~~~g~I~~~EF~~~l 88 (248)
.-++.|..+|. -| |.| |.+|..||..+... -|+.++.+.++..+-+.+...- +.+ .+..+...-|+-+-
T Consensus 192 ~~v~al~RIFki~D~d~D-~~Lsd~Eln~fQ~~-----CF~~pl~p~~l~~vk~vv~e~~p~gv--~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDND-GALSDAELNDFQKK-----CFNTPLDPQELEDVKNVVQEICPDGV--YERGLTLPGFLFLN 263 (625)
T ss_pred HHHHHHHHHHhhhccccc-cccchhhhhHHHHH-----hcCCCCCHHHHHHHHHHHHhhcCchh--hhccccccchHHHH
Confidence 34677789999 89 999 99999999996542 2667777777666655555331 001 12222222342222
Q ss_pred HHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChH
Q 025784 89 SDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFP 168 (248)
Q Consensus 89 ~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~ 168 (248)
..+ +.+. ..| ..|.+-+.|--+++=.|+.+.|.+- +-+||-++.+
T Consensus 264 ~lf----------------------ierg-r~E-----ttW~iLR~fgY~DsleL~~~~l~p~-------~~~~p~~s~E 308 (625)
T KOG1707|consen 264 TLF----------------------IERG-RHE-----TTWTILRKFGYTDSLELTDEYLPPR-------LKVPPDQSVE 308 (625)
T ss_pred HHH----------------------HHhc-ccc-----chhhhhhhcCCcchhhhhhhhcCcc-------ccCCCCccee
Confidence 111 0000 112 2556666665555545554444422 2345544433
Q ss_pred ----H---HHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 169 ----Q---LNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 169 ----~---~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
. +..+|..+|.|+||.++-+||..+++
T Consensus 309 Ls~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~ 342 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFS 342 (625)
T ss_pred ccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhh
Confidence 1 56789999999999999999998876
No 100
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.85 E-value=0.8 Score=46.27 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=57.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
.....|..+|.|+.|+.+.+.++.+|+..++ ++| ...+.+++.++|.+.+|.+...||.++|..+-.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~--~~d----~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENV--GWD----EDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 3567899999999999999999999998763 454 678999999999999999999999999886543
No 101
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=89.45 E-value=1.3 Score=30.89 Aligned_cols=48 Identities=2% Similarity=0.084 Sum_probs=34.8
Q ss_pred ccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHH
Q 025784 30 TVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (248)
Q Consensus 30 ~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (248)
++|..|++. |..+. +.+.+.-...+++..|++ ++|.++-+||.+..+.
T Consensus 1 kmsf~Evk~lLk~~N-------I~~~~~yA~~LFq~~D~s------~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-------IEMDDEYARQLFQECDKS------QSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----------HHHHHHHHHHH-SS------SSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-------cCcCHHHHHHHHHHhccc------CCCCccHHHHHHHHHH
Confidence 478899999 65543 346677788999999999 7999999999766554
No 102
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=88.89 E-value=0.2 Score=47.45 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=66.8
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 025784 76 IKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHM 155 (248)
Q Consensus 76 ~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~l 155 (248)
--+=-.+||+..|.+ .|+.+ +|-+.++++.=+..-.|+ +..+.=-|.+||+|+++.|.+.|++++=.-+
T Consensus 294 C~e~KKteFL~~Ll~-------aL~Td-mv~s~~~as~gr~~e~De---eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l 362 (421)
T KOG4578|consen 294 CPEKKKTEFLTSLLD-------ALKTD-MVMSGINASNGRKSEPDE---ERVVHWYFNQLDKNSNNDIERREWKPFKRVL 362 (421)
T ss_pred CCcchhhHHHHHHHH-------HHhhh-hhhhcccccCCcccCCCh---hheeeeeeeeecccccCccchhhcchHHHHH
Confidence 335678999555444 34432 344566666433334442 2256678999999999999999999753222
Q ss_pred CcccCCCCCCChHH-HHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 156 GVEFGVPPFSEFPQ-LNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 156 gv~~Glpp~~~~~~-~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
... . .... -..+++-.|-|+|.+||+.|.+.-+.
T Consensus 363 ~k~-s-----~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 363 LKK-S-----KPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred Hhh-c-----cHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 211 0 1122 45678889999999999999876553
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.30 E-value=0.94 Score=47.25 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=57.7
Q ss_pred cccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAI 95 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~i 95 (248)
++|. +| ..+ |+||..+-+. |..+ +||...+..|-..-|.| +||.++-+|| .|.-+|..+
T Consensus 199 QlFNa~Dktrs-G~Lsg~qaR~aL~qS---------~Lpq~~LA~IW~LsDvd------~DGkL~~dEf--ilam~liem 260 (1118)
T KOG1029|consen 199 QLFNALDKTRS-GYLSGQQARSALGQS---------GLPQNQLAHIWTLSDVD------GDGKLSADEF--ILAMHLIEM 260 (1118)
T ss_pred HHhhhcccccc-cccccHHHHHHHHhc---------CCchhhHhhheeeeccC------CCCcccHHHH--HHHHHHHHH
Confidence 8999 99 989 9999999999 7654 58999999999999999 7999999999 566666777
Q ss_pred HhhccCCCeE
Q 025784 96 ADELKDDPLV 105 (248)
Q Consensus 96 A~~L~~~piv 105 (248)
|-.=...|.+
T Consensus 261 a~sGq~lP~t 270 (1118)
T KOG1029|consen 261 AKSGQPLPKT 270 (1118)
T ss_pred HhcCCCCCCC
Confidence 7665555544
No 104
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=84.57 E-value=0.98 Score=43.13 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=46.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
.+-=.|..+|.+.||.|+..||+. +..-. -..=+...|...|...||.||-.|.+--+.
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~-I~ldk---------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRA-IELDK---------NEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhccccccccccCHHHhhh-hhccC---------chhHHHHHHhhhcccccCccccchhhhhhc
Confidence 467789999999999999999995 43311 022377889999999999999999886554
No 105
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=84.23 E-value=3 Score=39.74 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=73.6
Q ss_pred cccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHH
Q 025784 17 LSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (248)
Q Consensus 17 L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~ 93 (248)
|...|. +| +++ |.+...|--. ++- +-|-+..+.+++-+++.|+.. -||.++-++|+-.++-
T Consensus 261 l~~~f~LFde~~t-g~~D~re~v~~lav------lc~p~~t~~iiq~afk~f~v~------eDg~~ge~~ls~ilq~--- 324 (412)
T KOG4666|consen 261 LAPTFMLFDEGTT-GNGDYRETVKTLAV------LCGPPVTPVIIQYAFKRFSVA------EDGISGEHILSLILQV--- 324 (412)
T ss_pred hhhhhheecCCCC-CcccHHHHhhhhee------eeCCCCcHHHHHHHHHhcccc------cccccchHHHHHHHHH---
Confidence 448899 99 888 9998888766 543 345567789999999999999 6999998888654443
Q ss_pred HHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 025784 94 AIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (248)
Q Consensus 94 ~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~ 154 (248)
+.++.. ++ +--.|...+...+|+|+.++.++....
T Consensus 325 --~lgv~~-------l~-----------------v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 325 --VLGVEV-------LR-----------------VPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred --hcCcce-------ee-----------------ccccchhhhcccCcceeHHHHHHHHHh
Confidence 334333 22 556799999999999999999987654
No 106
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=84.16 E-value=8.9 Score=35.01 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=67.3
Q ss_pred CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCe
Q 025784 25 TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPL 104 (248)
Q Consensus 25 d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pi 104 (248)
--| |++|.+|+.-...+... +++++..-..+.+.|... .....++.+|.+.++... ..
T Consensus 67 kAD-G~Vse~Ei~~~~~l~~~-----~~l~~~~r~~a~~lf~~~------k~~~~~l~~~~~~~~~~~-------~~--- 124 (267)
T PRK09430 67 KAK-GRVTEADIRIASQLMDR-----MNLHGEARRAAQQAFREG------KEPDFPLREKLRQFRSVC-------GG--- 124 (267)
T ss_pred hcC-CCcCHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHh------cccCCCHHHHHHHHHHHh-------cc---
Confidence 557 99999999853222111 456676655555555555 455688999977776632 12
Q ss_pred EEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHH
Q 025784 105 VVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKK 176 (248)
Q Consensus 105 vv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e 176 (248)
.+......+...|..-=.| |.++..|-. +|.+++..+|++ ...++.++.+
T Consensus 125 ---------------r~~l~~~lL~~l~~vA~AD--G~l~~~E~~-~L~~Ia~~Lgis----~~df~~~~~~ 174 (267)
T PRK09430 125 ---------------RFDLLRMFLEIQIQAAFAD--GSLHPNERQ-VLYVIAEELGFS----RFQFDQLLRM 174 (267)
T ss_pred ---------------cHHHHHHHHHHHHHHHHhc--CCCCHHHHH-HHHHHHHHcCCC----HHHHHHHHHH
Confidence 1222233355566655555 789999966 787887778886 4556665554
No 107
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.42 E-value=1.8 Score=45.78 Aligned_cols=158 Identities=13% Similarity=0.145 Sum_probs=109.4
Q ss_pred cccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHH
Q 025784 17 LSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (248)
Q Consensus 17 L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~ 93 (248)
+.+.|+ +| .++ |.|+.+|-.. ++. -++|+....++-.-.|.. +.|..+..+|..-+|.+-.
T Consensus 13 ~~~~~~~~d~~~~-G~i~g~~a~~f~~~---------s~L~~qvl~qiws~~d~~------~~g~l~~q~f~~~lrlva~ 76 (847)
T KOG0998|consen 13 FDQYFKSADPQGD-GRITGAEAVAFLSK---------SGLPDQVLGQIWSLADSS------GKGFLNRQGFYAALRLVAQ 76 (847)
T ss_pred HHHhhhccCcccC-CcccHHHhhhhhhc---------cccchhhhhccccccccc------cCCccccccccccchHhhh
Confidence 346799 99 999 9999999999 654 368899999988888888 6799999999999998755
Q ss_pred HHHhhccCCCeEE--------E---------------EeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHH
Q 025784 94 AIADELKDDPLVV--------C---------------VLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQN 150 (248)
Q Consensus 94 ~iA~~L~~~pivv--------~---------------~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~ 150 (248)
+-...--..+.+. - .-++..+--+--++. ..-+.+|..+... +|..+-+-.++
T Consensus 77 aq~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~---aky~q~f~s~~p~-~g~~sg~~~~p 152 (847)
T KOG0998|consen 77 AQSGRELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQ---AKYDQIFRSLSPS-NGLLSGDKAKP 152 (847)
T ss_pred hhcccCcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHH---HHHHHHHhccCCC-CCccccchhhh
Confidence 4332222222210 0 111111111111111 3567779999987 89999999999
Q ss_pred HHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHH
Q 025784 151 ALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIV 202 (248)
Q Consensus 151 al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A 202 (248)
+|.+= ++| ......+-.-.|.|.+|.++..||..-|.-+...|-
T Consensus 153 il~~s----~Lp----~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~ 196 (847)
T KOG0998|consen 153 ILLNS----KLP----SDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLN 196 (847)
T ss_pred hhhcC----CCC----hhhhccccccccccccCCCChhhhhhhhhHHHHHhh
Confidence 98662 454 333334445689999999999999999987776654
No 108
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=80.86 E-value=7.8 Score=29.38 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=60.7
Q ss_pred CCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEE
Q 025784 27 DSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVV 106 (248)
Q Consensus 27 d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv 106 (248)
| |.+|.+|...+.++-.. +| ++++.+...++..+... .+...++.+|.+.++..
T Consensus 13 D-G~v~~~E~~~i~~~l~~--~~--~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~--------------- 66 (104)
T cd07313 13 D-GEYDEEERAAIDRLLAE--RF--GLDAEEAAELLAEAEAL------EEEAPDLYEFTSLIKEH--------------- 66 (104)
T ss_pred c-CCCCHHHHHHHHHHHHH--Hh--CcCHHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHh---------------
Confidence 6 99999999885543222 23 47788999999988877 57778999996665541
Q ss_pred EEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 025784 107 CVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHM 155 (248)
Q Consensus 107 ~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~l 155 (248)
. ++..=...+..+|+.--.| |.++..|.. .+.++
T Consensus 67 -----------~-~~~~r~~~l~~L~~vA~AD--G~~~~~E~~-~l~~i 100 (104)
T cd07313 67 -----------F-DYEERLELVEALWEVAYAD--GELDEYEEH-LIRRV 100 (104)
T ss_pred -----------C-CHHHHHHHHHHHHHHHHhc--CCCCHHHHH-HHHHH
Confidence 1 1222234577777777776 789888877 55554
No 109
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=80.46 E-value=1.5 Score=41.42 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=43.7
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHH-----------HHHHHHhCCCCCcccCHHHHHHHH
Q 025784 130 NLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQL-----------NDILKKHGAEGEEELGQAQFTELL 194 (248)
Q Consensus 130 ~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~-----------~~i~~e~D~d~DG~Id~eEF~~lm 194 (248)
-.|.-.|.|+||++...||...|..- .+---.|......| +-+++++|.|.|.-|+.+||+.--
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkE-LEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKE-LEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 35788899999999999999766431 11011222212211 247889999999999999998654
No 110
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=79.76 E-value=1.7 Score=34.65 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeE
Q 025784 26 SDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLV 105 (248)
Q Consensus 26 ~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~piv 105 (248)
-| |.++.+|+..+...-.. . .++|+.....++..++.- ....+++.+|...++..
T Consensus 36 aD-G~v~~~E~~~i~~~~~~--~--~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~-------------- 90 (140)
T PF05099_consen 36 AD-GEVDPEEIEAIRQLLAE--R--FGLSPEEAEELIELADEL------KQEPIDLEELLRELRDS-------------- 90 (140)
T ss_dssp TT-SS--CHHHHHHHHHHHH--C--GCGSCHHHHHHHHHHCHH------HHHCCHHHHHHHHHCTS--------------
T ss_pred cC-CCCCHHHHHHHHHHHHH--h--hCCCHHHHHHHHHHHHHH------HhccccHHHHHHHHHHh--------------
Confidence 47 99999999885443211 1 346677778888877766 45577788884433221
Q ss_pred EEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCC
Q 025784 106 VCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPF 164 (248)
Q Consensus 106 v~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~ 164 (248)
+ ++..-...+..++..--.| |.++..|-+ .+.++...+|+|+.
T Consensus 91 ------------~-~~~~r~~ll~~l~~ia~AD--G~~~~~E~~-~l~~ia~~L~i~~~ 133 (140)
T PF05099_consen 91 ------------L-SPEEREDLLRMLIAIAYAD--GEISPEEQE-FLRRIAEALGISEE 133 (140)
T ss_dssp ---------------HHHHHHHHHHHHHHCTCT--TC-SCCHHH-HHHHHHHHCTS-SS
T ss_pred ------------h-chHHHHHHHHHHHHHHhcC--CCCCHHHHH-HHHHHHHHcCCCHH
Confidence 1 1233445688899988887 788888877 67777777888753
No 111
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=2.5 Score=44.72 Aligned_cols=172 Identities=13% Similarity=0.202 Sum_probs=114.6
Q ss_pred hhHhhcccccc-CCCCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHH
Q 025784 12 TQLRSLSQPLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (248)
Q Consensus 12 ~~i~~L~~~F~-lDd~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (248)
.+....-++|. +.-.. |+++.+-.++ ++.. .+|-.....+=...|.| .+|.++..||.-.|+
T Consensus 126 qe~aky~q~f~s~~p~~-g~~sg~~~~pil~~s---------~Lp~~~l~~iw~l~d~d------~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 126 QEQAKYDQIFRSLSPSN-GLLSGDKAKPILLNS---------KLPSDVLGRIWELSDID------KDGNLDRDEFAVAMH 189 (847)
T ss_pred HHHHHHHHHHhccCCCC-CccccchhhhhhhcC---------CCChhhhcccccccccc------ccCCCChhhhhhhhh
Confidence 44455557799 88557 9999999999 6553 46776777777777787 799999999987777
Q ss_pred HHHHHHHhhccCCCeEEE--Eeccchh---------------------------h-------------------------
Q 025784 90 DYITAIADELKDDPLVVC--VLDGNML---------------------------K------------------------- 115 (248)
Q Consensus 90 ~il~~iA~~L~~~pivv~--~lDGs~l---------------------------~------------------------- 115 (248)
-+...+---..-.|--.- .|..++. +
T Consensus 190 l~~~~l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~ 269 (847)
T KOG0998|consen 190 LINDLLNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQL 269 (847)
T ss_pred HHHHHhhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCcccccccccccccc
Confidence 654433311111110000 0000000 0
Q ss_pred --hh--cCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHH
Q 025784 116 --LF--LGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFT 191 (248)
Q Consensus 116 --~f--l~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~ 191 (248)
.+ +-.+.. ......+|.+.|++.+|+|+-.+.+..|.. .|++ ...+..+-...|.+..|.+++.||+
T Consensus 270 ~~s~~~~vsp~d-~~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~----~~~l~~~w~l~d~~n~~~ls~~ef~ 340 (847)
T KOG0998|consen 270 IVSWSPKVSPSD-KQKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLS----KPRLAHVWLLADTQNTGTLSKDEFA 340 (847)
T ss_pred ccccCcccChHH-HHHHHHHHHhccccCCCccccccccccccc----CCCC----hhhhhhhhhhcchhccCcccccccc
Confidence 00 111110 123455899999999999999999988755 5665 4456677778999999999999999
Q ss_pred HHHHHHHHHHHHHhccCC
Q 025784 192 ELLRQVLQDIVDALADKH 209 (248)
Q Consensus 192 ~lm~kil~~~A~~L~~~P 209 (248)
-.|-.+...-+++ ..-|
T Consensus 341 ~~~~~~~~~~~~g-~~lP 357 (847)
T KOG0998|consen 341 LAMHLLEQKRAEG-RSLP 357 (847)
T ss_pred hhhhhhhhhhhcC-CCCc
Confidence 9999888887776 4444
No 112
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=77.96 E-value=2.2 Score=40.86 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=42.2
Q ss_pred cccccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHH
Q 025784 17 LSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (248)
Q Consensus 17 L~~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (248)
+.=+|. || |.| |.|+.+||+++- ++--+.=+.+.|+..|.. .+|.|+-.|+--
T Consensus 252 ~gWMFnklD~N~D-l~Ld~sEl~~I~----------ldknE~CikpFfnsCD~~------kDg~iS~~EWC~ 306 (434)
T KOG3555|consen 252 LGWMFNKLDTNYD-LLLDQSELRAIE----------LDKNEACIKPFFNSCDTY------KDGSISTNEWCY 306 (434)
T ss_pred hhhhhhccccccc-cccCHHHhhhhh----------ccCchhHHHHHHhhhccc------ccCccccchhhh
Confidence 335799 99 999 999999999942 123344588999999998 799999999843
No 113
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=77.38 E-value=12 Score=31.35 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=43.9
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 130 NLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 130 ~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
..|..|-..+...++-.-..+.+...++ ++..-....++-||..+-..+...|+|++|+..|..+..
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i---~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGI---IDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS-----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCC---CCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 3344444444557888888888877654 122223567899999987777778999999998886543
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=75.59 E-value=10 Score=32.87 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=52.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCc------------ccCCCC-C-----------------------CChH--
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGV------------EFGVPP-F-----------------------SEFP-- 168 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv------------~~Glpp-~-----------------------~~~~-- 168 (248)
.+.+--..||.|+||.|..-|.=..+..+|- +.++.+ . |++.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4667778899999999999998888877762 112211 1 1111
Q ss_pred ---------HHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 169 ---------QLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 169 ---------~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
..++||++++..+.+.+++.|..+|++.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 2678999999988899999999999984
No 115
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=75.10 E-value=21 Score=26.90 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeE
Q 025784 26 SDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLV 105 (248)
Q Consensus 26 ~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~piv 105 (248)
-| |++|.+|...+..+-.. ..+++.....+...+... .+...++.+|.+.++.. ++.
T Consensus 12 aD-G~v~~~E~~~i~~~l~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~-------~~~---- 68 (106)
T cd07316 12 AD-GRVSEAEIQAARALMDQ-----MGLDAEARREAIRLFNEG------KESDFGLEEYARQFRRA-------CGG---- 68 (106)
T ss_pred cc-CCcCHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHh------CcCCCCHHHHHHHHHHH-------HCC----
Confidence 37 99999999886554322 234455555566655544 23337788886655442 111
Q ss_pred EEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 025784 106 VCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHM 155 (248)
Q Consensus 106 v~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~l 155 (248)
+++.=...+..+|..--.| |.++..|-. .+.++
T Consensus 69 --------------~~~~r~~~l~~l~~vA~AD--G~~~~~E~~-~l~~i 101 (106)
T cd07316 69 --------------RPELLLQLLEFLFQIAYAD--GELSEAERE-LLRRI 101 (106)
T ss_pred --------------CHHHHHHHHHHHHHHHHHc--CCCCHHHHH-HHHHH
Confidence 2222334577777777775 789888877 55554
No 116
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.69 E-value=5.6 Score=39.88 Aligned_cols=61 Identities=15% Similarity=0.284 Sum_probs=51.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
...+-|+.+-.|-+|+|+-.--+.+|.+- -+| -+.+.-|.+-.|.|.||.++..||++.|.
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKS----klp----i~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKS----KLP----IEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhc----cCc----hHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 36678999999999999999999999773 354 45677788889999999999999999874
No 117
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=74.30 E-value=2.2 Score=40.61 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=50.6
Q ss_pred HHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCC
Q 025784 59 STALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTE 138 (248)
Q Consensus 59 ~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D 138 (248)
.=-|+.+|.| +++.|++.|+.- .+.+|...........+.|++-|.|
T Consensus 336 ~w~F~qLdkN------~nn~i~rrEwKp---------------------------FK~~l~k~s~~rkC~rk~~~yCDlN 382 (421)
T KOG4578|consen 336 HWYFNQLDKN------SNNDIERREWKP---------------------------FKRVLLKKSKPRKCSRKFFKYCDLN 382 (421)
T ss_pred eeeeeeeccc------ccCccchhhcch---------------------------HHHHHHhhccHHHHhhhcchhcccC
Confidence 3347788888 899999999822 3556666666777899999999999
Q ss_pred CCCcccHHHHHHHHhc
Q 025784 139 DEGKVCKGEIQNALGH 154 (248)
Q Consensus 139 ~dG~LS~~EL~~al~~ 154 (248)
+|-+||.+|++.-|+.
T Consensus 383 kDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 383 KDKKISLDEWRGCLGV 398 (421)
T ss_pred CCceecHHHHhhhhcc
Confidence 9999999999987644
No 118
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=74.16 E-value=6.2 Score=41.06 Aligned_cols=66 Identities=14% Similarity=0.341 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 125 TMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 125 ~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
...+..+|++.|++++|.++.++...++..+.+..+ ......+|++.+.-+++++..++|..+...
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~------~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLS------ESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhh------HHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 457899999999999999999999999988865432 345678899998889999999999887664
No 119
>PF14425 Imm3: Immunity protein Imm3
Probab=73.91 E-value=18 Score=29.43 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=58.1
Q ss_pred hhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCC-CCcccCHHHHHHH
Q 025784 115 KLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAE-GEEELGQAQFTEL 193 (248)
Q Consensus 115 ~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d-~DG~Id~eEF~~l 193 (248)
.+|+....-....+..+|..|| +.|..-+--+--+++.+-..+..-+.+-...+-+.+++++.. -.+.++.+|+..+
T Consensus 18 ~e~~~~d~s~~eaiar~~~eye--~lg~~EkiIv~~~igEi~l~~~~i~~~~~~~i~~~L~~~~~~~~~~eLt~eE~~dL 95 (117)
T PF14425_consen 18 DEYLNEDRSYSEAIARTFDEYE--NLGETEKIIVDTAIGEILLSHNKIFVGQKEGITKRLSQFDFEEVKGELTQEEKEDL 95 (117)
T ss_pred HHHHHccCCHHHHHHHHHHHHH--ccCcHHHHHHHHHHHHHHhhcchHHhhHHHHHHHHHHhcChHHHHhHhhHHHHHHH
Confidence 3334444445567999999996 567776666666666654433311111122344556676543 3478999999999
Q ss_pred HHHHHHHHHHHhccCCe
Q 025784 194 LRQVLQDIVDALADKHI 210 (248)
Q Consensus 194 m~kil~~~A~~L~~~PV 210 (248)
++.+ ..|=.+|+.-||
T Consensus 96 ~~R~-nkVL~~l~~~~i 111 (117)
T PF14425_consen 96 SQRI-NKVLDGLEKVEI 111 (117)
T ss_pred HHHH-HHHHHHHhcCcc
Confidence 8865 456678888886
No 120
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=73.32 E-value=17 Score=38.04 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=88.4
Q ss_pred cccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAI 95 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~i 95 (248)
..|. .| +.+ |.++..|..+ +..+- ..+...-...++++.+.. +++.+...+|.+....
T Consensus 140 ~~~~~ad~~~~-~~~~~~~~~~~~~~~n-------~~l~~~~~~~~f~e~~~~------~~~k~~~~~~~~~~~~----- 200 (746)
T KOG0169|consen 140 SIFQEADKNKN-GHMSFDEVLDLLKQLN-------VQLSESKARRLFKESDNS------QTGKLEEEEFVKFRKE----- 200 (746)
T ss_pred HHHHHHccccc-cccchhhHHHHHHHHH-------HhhhHHHHHHHHHHHHhh------ccceehHHHHHHHHHh-----
Confidence 7788 99 999 9999999999 54432 234566677788888777 6899999999553333
Q ss_pred HhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHH
Q 025784 96 ADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILK 175 (248)
Q Consensus 96 A~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~ 175 (248)
+..+ +.+..+|..+-.+ .+++|..+|..+|+... |..-. ......+|++
T Consensus 201 ----------------------~~~r----pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q---~e~~~-~~~~ae~ii~ 249 (746)
T KOG0169|consen 201 ----------------------LTKR----PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ---GEDGA-TLDEAEEIIE 249 (746)
T ss_pred ----------------------hccC----chHHHHHHHHhCC-CCccCHHHHHHHHHHhc---ccccc-cHHHHHHHHH
Confidence 1111 2488888887766 89999999999998763 32212 2445677777
Q ss_pred HhCC----CCCcccCHHHHHHHHH
Q 025784 176 KHGA----EGEEELGQAQFTELLR 195 (248)
Q Consensus 176 e~D~----d~DG~Id~eEF~~lm~ 195 (248)
++-. -..+.++.+-|...|-
T Consensus 250 ~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 250 RYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HhhhhhhccccceecHHHHHHHhc
Confidence 5522 2455589999988775
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=72.38 E-value=34 Score=29.66 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHH--HhCCCCCcccCHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILK--KHGAEGEEELGQAQFT 191 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~--e~D~d~DG~Id~eEF~ 191 (248)
..+++|+.+++.+.+.||..|+...+...... .+|.+=....-++.- ..-.|.||.+..|.=+
T Consensus 97 kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~--~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR 161 (174)
T PF05042_consen 97 KFEEIFSKYAKTGPDALTLRELWRMLKGNRNA--NDPFGWFAAFFEWGALYILAKDKDGFLSKEDIR 161 (174)
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHhcccc--CCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHh
Confidence 57899999999888999999999888664321 222221111111111 2346789999877544
No 122
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=70.69 E-value=6.3 Score=29.90 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=37.9
Q ss_pred CCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHH
Q 025784 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (248)
Q Consensus 140 dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ki 197 (248)
||.+|..|.+.+-.-+...+|++ ....+.+++.+....+...+..+|...++..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLD----AEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcC----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 68999999885544444446775 4566777777766666777888888877653
No 123
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=68.75 E-value=3.7 Score=34.20 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=42.3
Q ss_pred CccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCc-ccccccccHHHHHHHHHHHHHHHHhhccCCCeEEE
Q 025784 29 STVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDV-TFRIKEFDRDHASKLASDYITAIADELKDDPLVVC 107 (248)
Q Consensus 29 G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~-~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~ 107 (248)
+.||++|+.+|.+.- .-.-.-+..+|++|..+|.-- -+..+.|+|+-|..-|+-|
T Consensus 6 ~~lsp~eF~qLq~y~--------eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y---------------- 61 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS--------EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY---------------- 61 (138)
T ss_dssp S-S-HHHHHHHHHHH--------HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH----------------
T ss_pred eccCHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH----------------
Confidence 789999998865431 022346889999997664111 1256799999998888776
Q ss_pred EeccchhhhhcCCcchhHHHHHHHHhhhCCCC
Q 025784 108 VLDGNMLKLFLGNEDDFTMLAENLFADLDTED 139 (248)
Q Consensus 108 ~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~ 139 (248)
++-+ .=+...+++|..|=+..
T Consensus 62 ----------Le~d-~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 62 ----------LEVD-LPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp ----------TT-S---HHHHHHHHHHS----
T ss_pred ----------HcCC-CCHHHHHHHHHHHhCcc
Confidence 3333 23346888888886654
No 124
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=68.10 E-value=19 Score=32.48 Aligned_cols=25 Identities=16% Similarity=0.539 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhccCCeEEEecccc
Q 025784 194 LRQVLQDIVDALADKHIIIIPNIKI 218 (248)
Q Consensus 194 m~kil~~~A~~L~~~PV~v~~~~~~ 218 (248)
|-++|..+|+.|+..-|+|+|.+|.
T Consensus 174 iMk~Lrrla~el~KtiviVlHDINf 198 (252)
T COG4604 174 IMKILRRLADELGKTIVVVLHDINF 198 (252)
T ss_pred HHHHHHHHHHHhCCeEEEEEecccH
Confidence 4479999999999999999998874
No 125
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=65.95 E-value=11 Score=42.35 Aligned_cols=87 Identities=13% Similarity=0.276 Sum_probs=63.6
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHH----HHHHHHh
Q 025784 130 NLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL----QDIVDAL 205 (248)
Q Consensus 130 ~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil----~~~A~~L 205 (248)
..|++.|.||.|.||+.+..+|++... + - ....++-++.-...|.+...+|++|..-+.+-. ..+|--|
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~--y----tqse~dfllscae~dend~~~y~dfv~rfhepakdigfnvavll 4133 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-H--Y----TQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDIGFNVAVLL 4133 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-c--c----hhHHHHHHHHhhccCccccccHHHHHHHhcCchhhcCcchhhhh
Confidence 468999999999999999999997632 1 1 133567788888889999999999998876432 2233222
Q ss_pred ccCCeEEEeccccccChhHHHHHh
Q 025784 206 ADKHIIIIPNIKIIDGSKLRMVIQ 229 (248)
Q Consensus 206 ~~~PV~v~~~~~~~dGs~l~~~l~ 229 (248)
-+ .+|.+-+.|.|+-+|.
T Consensus 4134 tn------lsehmpndsrlk~~ld 4151 (5019)
T KOG2243|consen 4134 TN------LSEHMPNDSRLKCFLD 4151 (5019)
T ss_pred hh------hHhhCCCchhHHHHHh
Confidence 22 3567778899988875
No 126
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=65.66 E-value=9 Score=40.74 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=62.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH----------
Q 025784 126 MLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR---------- 195 (248)
Q Consensus 126 ~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~---------- 195 (248)
..+.+.|..+|..+.|.++.++++.+|..+|-..+-.... ...|-.++...|.++-|.+++.+|-.-|.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~-~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQG-IAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHH-HHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 3589999999999999999999999998887543210000 12466677788999999999999998876
Q ss_pred HHHHHHHHHhccCC
Q 025784 196 QVLQDIVDALADKH 209 (248)
Q Consensus 196 kil~~~A~~L~~~P 209 (248)
++++++-+--+.++
T Consensus 826 r~i~s~~d~~ktk~ 839 (890)
T KOG0035|consen 826 RAILAFEDWAKTKA 839 (890)
T ss_pred HHHHHHHHHHcchh
Confidence 56677766666666
No 127
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=65.45 E-value=5.4 Score=29.36 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHh
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALG 153 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~ 153 (248)
.+.++|+.+ .++.++||..+|+..|-
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 489999999 77889999999998763
No 128
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=57.68 E-value=1.9 Score=31.81 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=34.7
Q ss_pred hhcccccc-CCCCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCC-CCCcccccccccHHHHH
Q 025784 15 RSLSQPLA-LPTSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGS-DDDVTFRIKEFDRDHAS 85 (248)
Q Consensus 15 ~~L~~~F~-lDd~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~-~~~~~~~~g~I~~~EF~ 85 (248)
.++.+.|+ |-+ +|+.||.+||+.. +++...+-.++++..- +....-..|.+||..|.
T Consensus 6 eqv~~aFr~lA~-~KpyVT~~dLr~~-------------l~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~ 64 (69)
T PF08726_consen 6 EQVEEAFRALAG-GKPYVTEEDLRRS-------------LTPEQAEYCISRMPPYEGPDGDAIPGAYDYESFT 64 (69)
T ss_dssp HHHHHHHHHHCT-SSSCEEHHHHHHH-------------S-CCCHHHHHCCSEC--SSS----TTEEECHHHH
T ss_pred HHHHHHHHHHHc-CCCcccHHHHHHH-------------cCcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHH
Confidence 44567788 854 4499999999993 2333447777777632 11000134789999994
No 129
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.74 E-value=23 Score=35.72 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=60.5
Q ss_pred hhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHH
Q 025784 15 RSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDY 91 (248)
Q Consensus 15 ~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~i 91 (248)
...++.|+ +- |-. |.|+++--++ +-++ .+|-.++.-|-+..|.+ +||.++..||-..|.-
T Consensus 231 eYYvnQFrtvQpDp~-gfisGsaAknFFtKS---------klpi~ELshIWeLsD~d------~DGALtL~EFcAAfHL- 293 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPH-GFISGSAAKNFFTKS---------KLPIEELSHIWELSDVD------RDGALTLSEFCAAFHL- 293 (737)
T ss_pred HHHHhhhhcccCCcc-cccccHHHHhhhhhc---------cCchHHHHHHHhhcccC------ccccccHHHHHhhHhh-
Confidence 34458899 88 988 9999999999 6554 47888999999999999 8999999999665543
Q ss_pred HHHHHhhccCCCeEEEEeccchhhhhc
Q 025784 92 ITAIADELKDDPLVVCVLDGNMLKLFL 118 (248)
Q Consensus 92 l~~iA~~L~~~pivv~~lDGs~l~~fl 118 (248)
||++=||-.|-+=|
T Consensus 294 -------------VVaRkNgypLPe~L 307 (737)
T KOG1955|consen 294 -------------VVARKNGYPLPESL 307 (737)
T ss_pred -------------eeecccCCCCCCCC
Confidence 89999998885544
No 130
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=55.66 E-value=84 Score=24.27 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=40.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccC---cccC-CCCCCC-hHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMG---VEFG-VPPFSE-FPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lg---v~~G-lpp~~~-~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
..+-+|+.+ .|++|.+++.-|...|..+- ...| .|..+. ...+.+.|... .....|+-++|...|+
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 367889999 78899999999887776541 1111 122221 33577788876 3677799999999886
No 131
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=55.17 E-value=12 Score=38.13 Aligned_cols=67 Identities=10% Similarity=0.048 Sum_probs=55.0
Q ss_pred hhhHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHH
Q 025784 11 GTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (248)
Q Consensus 11 g~~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (248)
-++++-++.+|. || |.. |.++.+.++. +...+ .+.|+....+++++.+.+ .+|.+...||.+.
T Consensus 589 ~~~~~~~~~rf~~lD~~k~-~~~~i~~v~~vlk~~~-------~~~d~~~~~~~l~ea~~~------~~g~v~l~e~~q~ 654 (680)
T KOG0042|consen 589 PEDFLRRKTRFAFLDADKK-AYQAIADVLKVLKSEN-------VGWDEDRLHEELQEADEN------LNGFVELREFLQL 654 (680)
T ss_pred HHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHh------hcceeeHHHHHHH
Confidence 345666678899 99 777 9999999999 65432 468899999999999999 7999999999887
Q ss_pred HHHH
Q 025784 88 ASDY 91 (248)
Q Consensus 88 l~~i 91 (248)
++.+
T Consensus 655 ~s~~ 658 (680)
T KOG0042|consen 655 MSAI 658 (680)
T ss_pred HHHH
Confidence 7664
No 132
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=54.07 E-value=1.1e+02 Score=24.84 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=54.8
Q ss_pred hhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhh
Q 025784 55 QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFAD 134 (248)
Q Consensus 55 ~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~ 134 (248)
=..+.+++.+...++. .+..++..|....|.++...++.++...+=+ +-..+ +.+-+..+.=++..
T Consensus 40 l~~v~~~f~~~~l~~~----~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i----~~~~v------~~a~~L~ln~Ll~v 105 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQS----NDSSLSVSQLETLLSSIYEFLNKRLPTLHQI----PSRPV------DLAVDLLLNWLLNV 105 (127)
T ss_dssp HHHHHHHHHHTT---T-----TSEEEHHHHHHHHHHHHHHHHHHSTTS--H----H-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcc----cCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC----CchhH------HHHHHHHHHHHHHH
Confidence 3456677777776631 2567999999999999998888888773210 00000 13344556777888
Q ss_pred hCCCCCCcccHHHHHHHHhc
Q 025784 135 LDTEDEGKVCKGEIQNALGH 154 (248)
Q Consensus 135 lD~D~dG~LS~~EL~~al~~ 154 (248)
+|++++|+|+.-.++.+|--
T Consensus 106 yD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 106 YDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp H-TT--SEEEHHHHHHHHHH
T ss_pred hCCCCCCeeehhHHHHHHHH
Confidence 99999999999999988754
No 133
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=52.82 E-value=35 Score=25.60 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=20.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccC
Q 025784 126 MLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFG 160 (248)
Q Consensus 126 ~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~G 160 (248)
..+..++..-..| |.++..|.+ .|.++...+|
T Consensus 79 ~~~~~~~~ia~aD--G~~~~~E~~-~L~~l~~~Lg 110 (111)
T cd07176 79 TAFAVAVDIAAAD--GEVDPEERA-VLEKLYRALG 110 (111)
T ss_pred HHHHHHHHHHHcc--CCCCHHHHH-HHHHHHHHhC
Confidence 3466666666665 788888877 6666554443
No 134
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=51.30 E-value=1.4e+02 Score=24.86 Aligned_cols=99 Identities=8% Similarity=0.100 Sum_probs=56.7
Q ss_pred CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHHHHHHhhccCCCe
Q 025784 25 TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPL 104 (248)
Q Consensus 25 d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il~~iA~~L~~~pi 104 (248)
--| |.+|.+|+..+..+... +++++.....++.. . .+-.++...|....
T Consensus 35 kAD-G~Vse~Ei~~~~~~m~~-----~~L~~e~~~~aie~---~------~~~~L~~~~~~~~~---------------- 83 (150)
T cd07311 35 KGD-GVISPEERDWAIGYAAA-----RGGDADMVEELKEY---T------ADEDLEEVDFRSPN---------------- 83 (150)
T ss_pred HcC-CCCCHHHHHHHHHHHHH-----cCCCHHHHHHHHHh---C------ccccHHHHHHHHHh----------------
Confidence 457 99999999875544333 35778888888888 2 24455555551100
Q ss_pred EEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHH
Q 025784 105 VVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKK 176 (248)
Q Consensus 105 vv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e 176 (248)
.++.. +.++ ...+..-=. ||.++..|-. .+.+++..+|+| ...+..+++.
T Consensus 84 ----~~~~~-~~ll----------~~~l~vA~A--DG~l~~~E~~-lL~~iA~~LGis----~~~~~~l~~~ 133 (150)
T cd07311 84 ----IKSSR-RALL----------YDAIQVCAA--DGELSPGEVA-AVRKAASLLGIS----EDEVQKLEEI 133 (150)
T ss_pred ----cchhH-HHHH----------HHHHHHHHc--CCCCCHHHHH-HHHHHHHHcCCC----HHHHHHHHHH
Confidence 00000 1111 112322222 5889988876 677777778886 4556666554
No 135
>PLN02952 phosphoinositide phospholipase C
Probab=49.23 E-value=1.1e+02 Score=31.53 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=42.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhC-------CCCCcccCHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHG-------AEGEEELGQAQFTELLR 195 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D-------~d~DG~Id~eEF~~lm~ 195 (248)
.+..+|..+-.+ .+.+|.++++.+|... +|.+.. +.+...+|+.++- ....+.++.+.|...|.
T Consensus 39 ei~~lf~~~~~~-~~~mt~~~l~~FL~~~---Q~e~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 39 DVKDVFCKFSVG-GGHMGADQLRRFLVLH---QDELDC-TLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHHHh---CCCcCC-CHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 499999999654 4789999999999774 454322 2344556655431 11234589999998875
No 136
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=44.72 E-value=44 Score=27.90 Aligned_cols=52 Identities=2% Similarity=0.082 Sum_probs=36.5
Q ss_pred CccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHH
Q 025784 29 STVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (248)
Q Consensus 29 G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (248)
..++...+.. +.+.+ +++-.++...++=++..+-.. +...|+|++|.+.|..
T Consensus 17 ~~m~~~~F~Kl~kD~~----i~d~k~t~tdvDiiF~Kvk~k------~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCG----IIDKKLTSTDVDIIFSKVKAK------GARKITFEQFLEALAE 69 (154)
T ss_dssp SEEEHHHHHHHHHHTS----S--SSS-HHHHHHHHHHHT-S------S-SEEEHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcC----CCCCCCchHHHHHHHHHhhcC------CCcccCHHHHHHHHHH
Confidence 5788888888 66654 334558888999999997655 4667999999777665
No 137
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=44.57 E-value=2.7e+02 Score=29.18 Aligned_cols=57 Identities=4% Similarity=0.109 Sum_probs=36.6
Q ss_pred hHHHHHHHHH-hCCCCCc-----ccCHHHHHHHHHHHHHHHHH--HhccCCeEEEeccccccChhHHHHHhc
Q 025784 167 FPQLNDILKK-HGAEGEE-----ELGQAQFTELLRQVLQDIVD--ALADKHIIIIPNIKIIDGSKLRMVIQH 230 (248)
Q Consensus 167 ~~~~~~i~~e-~D~d~DG-----~Id~eEF~~lm~kil~~~A~--~L~~~PV~v~~~~~~~dGs~l~~~l~~ 230 (248)
++.+++++.+ ......| .++-+.-..++.++-..+.. .-+..||++.. ..+|+++++
T Consensus 600 ~p~~E~~l~~~i~~~~~g~~l~~~l~p~~~~~l~~~~~~~~~~~~~~g~~pvll~s-------~~iR~~lr~ 664 (694)
T PRK12792 600 GNRWDLAFHQSLKRDAKGEVVEFDIDPRLVEQFGTEASEAIRERMDQGHQFVLVTA-------PEARPYVRM 664 (694)
T ss_pred CHHHHHHHHHHHhcccCCCccccCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEcC-------HHHHHHHHH
Confidence 4467777765 3322234 37777777777777666654 34567898887 557877754
No 138
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=44.56 E-value=46 Score=25.74 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=34.4
Q ss_pred HhCCCCCcccCHHHHHH--HHHHH---------------HHHHHHHhccCCeEEEeccccccChhHHH
Q 025784 176 KHGAEGEEELGQAQFTE--LLRQV---------------LQDIVDALADKHIIIIPNIKIIDGSKLRM 226 (248)
Q Consensus 176 e~D~d~DG~Id~eEF~~--lm~ki---------------l~~~A~~L~~~PV~v~~~~~~~dGs~l~~ 226 (248)
.+..+.||-|..+.+.. -|+.+ +..+|+.|+.++++.+. .||..+||
T Consensus 27 ~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~levs----eD~~~VRR 90 (90)
T cd08030 27 EVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKVS----EDGKRVGR 90 (90)
T ss_pred HhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEEc----CCCCccCC
Confidence 35567788887666542 23333 57899999999999998 88888775
No 139
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.54 E-value=35 Score=28.77 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=41.3
Q ss_pred cc-CCCCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHH
Q 025784 21 LA-LPTSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (248)
Q Consensus 21 F~-lDd~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (248)
|. +. -| |+++.+|...+..+-.. . .++++.++..++.....- +...|||..|...|++
T Consensus 36 f~Vm~-AD-G~v~~~E~~a~r~il~~--~--f~i~~~~l~ali~~~e~~------~~Ea~d~y~fts~l~r 94 (148)
T COG4103 36 FHVME-AD-GTVSESEREAFRAILKE--N--FGIDGEELDALIEAGEEA------GYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHh-cc-cCcCHHHHHHHHHHHHH--H--cCCCHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHH
Confidence 55 43 35 88999998884433222 2 357888999988887655 5889999999777664
No 140
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=41.10 E-value=30 Score=35.43 Aligned_cols=31 Identities=13% Similarity=0.409 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 025784 125 TMLAENLFADLDTEDEGKVCKGEIQNALGHM 155 (248)
Q Consensus 125 ~~~~~~~F~~lD~D~dG~LS~~EL~~al~~l 155 (248)
=.++...|..+|.|+||-++.+|++.++.-.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 3578999999999999999999999888664
No 141
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=40.22 E-value=4.6e+02 Score=27.49 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=38.1
Q ss_pred hHHHHHHHHH-hCCCCCc---ccCHHHHHHHHHHHHHHHHHH--hccCCeEEEeccccccChhHHHHHhc
Q 025784 167 FPQLNDILKK-HGAEGEE---ELGQAQFTELLRQVLQDIVDA--LADKHIIIIPNIKIIDGSKLRMVIQH 230 (248)
Q Consensus 167 ~~~~~~i~~e-~D~d~DG---~Id~eEF~~lm~kil~~~A~~--L~~~PV~v~~~~~~~dGs~l~~~l~~ 230 (248)
++.+++++.+ .-....| .++-+...++++++-..+... -+..||++.. ..+|+++++
T Consensus 587 ~p~~E~~l~~~i~~~~~g~~~~l~P~~~~~l~~~~~~~~~~~~~~g~~pvll~s-------~~iR~~lr~ 649 (678)
T TIGR01398 587 DPDLEAALAEALQRDGEGELLDLEPALLEELVRAVRKAVEKLANNGERPVLLTS-------PRVRPYVRR 649 (678)
T ss_pred CHHHHHHHHHHHhccCCCCccCcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeC-------HHHHHHHHH
Confidence 4567777775 3332334 477888888877777776643 4567888887 568887764
No 142
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.72 E-value=61 Score=27.37 Aligned_cols=68 Identities=21% Similarity=0.362 Sum_probs=43.7
Q ss_pred CcchhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 120 NEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 120 de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
||+ ....+ -+|.....| |.+|..|.+....-+.-.+|+| ...++.++.-...-+...+|+--|...|+
T Consensus 26 DP~-lAa~~-Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~----~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 26 DPR-LAAAA-LLFHVMEAD--GTVSESEREAFRAILKENFGID----GEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred CHH-HHHHH-HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 554 44444 788888887 7899999885444344567897 44566666644444455666666666655
No 143
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=38.88 E-value=3.4e+02 Score=28.40 Aligned_cols=56 Identities=11% Similarity=0.293 Sum_probs=34.6
Q ss_pred hHHHHHHHHHh-CCCCCc---ccCHHHHHHHHHHHHHHHHHHhccCCeEEEeccccccChhHHHHHhch
Q 025784 167 FPQLNDILKKH-GAEGEE---ELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMVIQHL 231 (248)
Q Consensus 167 ~~~~~~i~~e~-D~d~DG---~Id~eEF~~lm~kil~~~A~~L~~~PV~v~~~~~~~dGs~l~~~l~~~ 231 (248)
++.+++.+.+. -....| .++-++..+++.++-..+... ..||++.+ ..+|+++++-
T Consensus 582 ~p~~E~~l~~~i~~~~~g~~~~l~P~~~~~l~~~~~~~~~~~--~~pVllts-------~~iR~~lr~l 641 (675)
T PRK12720 582 GEGIENLIRESIRQTSAGTYSALSSRHSTQILQLIEQALKQS--QKLVLVTS-------VDVRRFLRKI 641 (675)
T ss_pred CHHHHHHHHHHHhcccCCCccccCHHHHHHHHHHHHHHHHcc--CCcEEEeC-------HHHHHHHHHH
Confidence 45677777652 222233 367777766666655555443 67999888 5588777653
No 144
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=38.43 E-value=1.4e+02 Score=23.44 Aligned_cols=103 Identities=15% Similarity=0.251 Sum_probs=49.0
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCC-cccHHHHHHHHhc
Q 025784 76 IKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEG-KVCKGEIQNALGH 154 (248)
Q Consensus 76 ~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG-~LS~~EL~~al~~ 154 (248)
+..|+++|+-+.++.+...+...-...| +...++ +...+..+...-..--....| .+|.+|+-.++..
T Consensus 10 ~eiIt~sel~~~~~~~~~~~~~~~~~~~------~~~~l~-----~qvLd~LI~e~L~~q~ak~~gI~vsd~evd~~i~~ 78 (118)
T PF09312_consen 10 DEIITQSELEQRLAQLKAQIQQQGQQIP------PRNQLR-----KQVLDQLIDEKLQLQEAKRLGIKVSDEEVDEAIAN 78 (118)
T ss_dssp SSEEEHHHHHHHHHHHHHHHHTTT-----------HHHHH-----HHHHHHHHHHHHHHHHHHHCT----HHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHHHHHHhcCCCCC------cHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6678888888887776555444322211 111111 111222222211111112233 4678888888877
Q ss_pred cCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 155 MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 155 lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
+....|++ .+.+...++. . -++|++|+..+++-+.
T Consensus 79 ia~~n~ls----~~ql~~~L~~---~---G~s~~~~r~~ir~~i~ 113 (118)
T PF09312_consen 79 IAKQNNLS----VEQLRQQLEQ---Q---GISYEEYREQIRKQIL 113 (118)
T ss_dssp HHHHTT------HHHHHHHCHH---C---T--HHHHHHHHHHHHH
T ss_pred HHHHcCCC----HHHHHHHHHH---c---CCCHHHHHHHHHHHHH
Confidence 76666663 3444444433 2 2599999999987654
No 145
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=37.62 E-value=14 Score=24.57 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=21.2
Q ss_pred Hhhcccccc-CC--CCCCCccCHHHHHHHHH
Q 025784 14 LRSLSQPLA-LP--TSDSSTVTGAQLLDFAE 41 (248)
Q Consensus 14 i~~L~~~F~-lD--d~d~G~ls~~EL~~l~~ 41 (248)
|..+..+|. .- ++|+.+||+.||+.|.+
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 555667777 43 77789999999999544
No 146
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=37.47 E-value=1.8e+02 Score=23.71 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=25.5
Q ss_pred cCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHH
Q 025784 31 VTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHA 84 (248)
Q Consensus 31 ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (248)
-|..||++ |.. .+.|+..++.++..+... |.|+=..|
T Consensus 26 ~s~~el~~kL~~---------kg~~~~~i~~vl~~l~~~--------~~ldD~~~ 63 (157)
T PRK00117 26 HSRAELRRKLAA---------KGFSEEVIEAVLDRLKEE--------GLLDDERF 63 (157)
T ss_pred hHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHc--------CCCCHHHH
Confidence 46678888 765 357788888888887644 45555566
No 147
>PRK10598 lipoprotein; Provisional
Probab=37.09 E-value=50 Score=28.86 Aligned_cols=39 Identities=10% Similarity=0.087 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhccCCeEEEeccccccChhHHHHH
Q 025784 190 FTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMVI 228 (248)
Q Consensus 190 F~~lm~kil~~~A~~L~~~PV~v~~~~~~~dGs~l~~~l 228 (248)
...++-.++..++.-|..+||++..++|-...+.++++.
T Consensus 132 l~~l~p~l~~~L~~~l~~~PVY~L~d~~~~~eal~kk~~ 170 (186)
T PRK10598 132 MQTLLPYLNQSLRSYFNQQPAYVLREDKSKAEALAKKLA 170 (186)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEECCCCCHHHHHHHhcc
Confidence 344455588889999999999999866665555665553
No 148
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=36.70 E-value=29 Score=25.34 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=29.2
Q ss_pred HHHHHHHHHhccCCeEEEeccccccChhHHHHHh
Q 025784 196 QVLQDIVDALADKHIIIIPNIKIIDGSKLRMVIQ 229 (248)
Q Consensus 196 kil~~~A~~L~~~PV~v~~~~~~~dGs~l~~~l~ 229 (248)
.+-..+++.|+.+|+-++..-|+-||+++.=.|+
T Consensus 15 Ri~~~l~~~l~~~~~g~I~~fKmtDG~giG~vv~ 48 (64)
T PF11061_consen 15 RIPKELVDKLGKNPIGTIKGFKMTDGSGIGVVVE 48 (64)
T ss_pred hccHHHHHHhccCCcEEEEEEEEecCCcEEEEEE
Confidence 3456789999999999999999999999876653
No 149
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=36.30 E-value=40 Score=20.65 Aligned_cols=17 Identities=12% Similarity=0.390 Sum_probs=14.8
Q ss_pred CcccCHHHHHHHHHHHH
Q 025784 182 EEELGQAQFTELLRQVL 198 (248)
Q Consensus 182 DG~Id~eEF~~lm~kil 198 (248)
.|.||.+||.+.-+++|
T Consensus 14 ~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 14 KGEISEEEYEQKKARLL 30 (31)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 58899999999888876
No 150
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=36.07 E-value=77 Score=24.48 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHhccCC
Q 025784 168 PQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKH 209 (248)
Q Consensus 168 ~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A~~L~~~P 209 (248)
+.|.-+|+++ .|.+|.+++..|..+++++++ +...+++.|
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lq-ip~~vgE~~ 42 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQ-IPRAVGEGP 42 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHH-HHHHTT-GG
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHH-HHHHhCccc
Confidence 3577789998 789999999999999998875 455566655
No 151
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=35.52 E-value=1.1e+02 Score=22.44 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHH
Q 025784 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 140 dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~ 199 (248)
+-.++-.-|-+++... +| +..++.+..-++.=..++|+.+||...||.|.+
T Consensus 6 sp~~~F~~L~~~l~~~-----l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH-----LP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHH-----CC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3345556666666552 44 334555555565557889999999999997765
No 152
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=35.12 E-value=25 Score=29.30 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=28.1
Q ss_pred CcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhC-------CCCCcccCHHHHHHHHHHHHH
Q 025784 141 GKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHG-------AEGEEELGQAQFTELLRQVLQ 199 (248)
Q Consensus 141 G~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D-------~d~DG~Id~eEF~~lm~kil~ 199 (248)
+.||..|... |++... . +...+..|+++|. .+.++.|+|+.|+..|+--|+
T Consensus 6 ~~lsp~eF~q-Lq~y~e-y------s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 6 VSLSPEEFAQ-LQKYSE-Y------STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp S-S-HHHHHH-HHHHHH-H----------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eccCHHHHHH-HHHHHH-H------HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 5677777663 433311 1 1224566777763 345669999999999996654
No 153
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=35.07 E-value=4e+02 Score=25.23 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCC-------CCCCcc---cHHHHH
Q 025784 80 DRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDT-------EDEGKV---CKGEIQ 149 (248)
Q Consensus 80 ~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~-------D~dG~L---S~~EL~ 149 (248)
.|++|.+.++++|..++..++-. =||.++ -=|.++|...+.+.-..+-. -.++.+ |..|.+
T Consensus 131 ~YTd~yQ~fn~~lSkls~~IsaG------~DGn~V---kFd~~~lk~~l~~~~~Ky~~~~~~~pa~~~~~i~~~s~~Ea~ 201 (308)
T TIGR02553 131 GYTDFYQAFSDILSKMQDWISPG------KDGNNV---KLDVGKLKALLQQLIDHLPNQINSFPAQSDGGMQLPKEADAR 201 (308)
T ss_pred HHHHHHHHHHHHHHHHhhhcccC------CCCCee---eeCHHHHHHHHHHHHHHhccCccCCccccccccccCcHHHHH
Confidence 38999999999999998887742 255444 11333344433333322221 112333 455666
Q ss_pred HHHhccCcccCCCCC-----C------ChHHHHHHHHHhCCCCCc---ccCHHHHHHHH
Q 025784 150 NALGHMGVEFGVPPF-----S------EFPQLNDILKKHGAEGEE---ELGQAQFTELL 194 (248)
Q Consensus 150 ~al~~lgv~~Glpp~-----~------~~~~~~~i~~e~D~d~DG---~Id~eEF~~lm 194 (248)
.-...| |+|+. . +...|++|...++..++| .++-.+|.+..
T Consensus 202 ~W~keL----g~~v~~~~~~~~G~I~~dl~~i~~m~~sl~~~g~g~~~~~~~A~YQAWq 256 (308)
T TIGR02553 202 RWRKEL----GLPVSCLQISDSGVVTVDPTPLIKMRDDLPPLGTGTELEWDNAKYQAWQ 256 (308)
T ss_pred HHHHHh----CCCCccccccCCCeEEeChHHHHHHHHhcCCCCCCCcccccHHHHHHHH
Confidence 555555 33322 1 122488898888765544 46777776554
No 154
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=34.55 E-value=1.1e+02 Score=27.98 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=24.8
Q ss_pred CCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 140 dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
||.+|..|++ +...+-..+++++.. -....++|++-- ....++++|+..++
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~-r~~a~~lf~~~k---~~~~~l~~~~~~~~ 119 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEA-RRAAQQAFREGK---EPDFPLREKLRQFR 119 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHH-HHHHHHHHHHhc---ccCCCHHHHHHHHH
Confidence 5777777777 444443334554211 011344454432 22256666665554
No 155
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=32.41 E-value=99 Score=22.69 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=25.2
Q ss_pred CChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHHHH
Q 025784 53 LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYI 92 (248)
Q Consensus 53 ~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~il 92 (248)
+|+.....+...++.= +.++|+++||.+.||.|.
T Consensus 22 l~~~~~~~l~~~Y~~~------k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEF------KKKKISREEFVRKLRQIV 55 (70)
T ss_pred CCHHHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHH
Confidence 6666666555555433 688999999999999873
No 156
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=32.39 E-value=53 Score=24.47 Aligned_cols=46 Identities=15% Similarity=0.351 Sum_probs=33.9
Q ss_pred HhCCCCCcccCHHHHHHH-----HHHHHHHHHHHhccCCeEEEeccccccChhHHH
Q 025784 176 KHGAEGEEELGQAQFTEL-----LRQVLQDIVDALADKHIIIIPNIKIIDGSKLRM 226 (248)
Q Consensus 176 e~D~d~DG~Id~eEF~~l-----m~kil~~~A~~L~~~PV~v~~~~~~~dGs~l~~ 226 (248)
.+..+.+|-|..+.+... +... ..+++.|..+|++.+. .||..+||
T Consensus 26 ~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~----~d~~~VRR 76 (76)
T cd08029 26 LTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVS----EDGENVRR 76 (76)
T ss_pred HhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEe----CCCCcccC
Confidence 355678888877776532 2233 7889999999999998 88888774
No 157
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=32.26 E-value=86 Score=33.66 Aligned_cols=97 Identities=10% Similarity=-0.084 Sum_probs=66.0
Q ss_pred hHhhcccccc-CC-CCCCCccCHHHHHH-HHHhcccccccCCCCC----hhhHHHHHHhhcCCCCCcccccccccHHHHH
Q 025784 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLP----QNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (248)
Q Consensus 13 ~i~~L~~~F~-lD-d~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~----~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (248)
.+.+|...|. .+ ... |.++++|++. ++.+|.. . .. ..+...+++..|.+ +.|.+++.+|.
T Consensus 745 v~~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg~~-----~-e~ee~~~~e~~~lvn~~n~l------~~~qv~~~e~~ 811 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDG-GAASPEELLRCLMSLGYN-----T-EEEEQGIAEWFRLVNKKNPL------IQGQVQLLEFE 811 (890)
T ss_pred HHHHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcCcc-----c-chhHHHHHHHHHHHhccCcc------cccceeHHHHH
Confidence 3556778888 88 666 9999999999 8876544 1 11 23566788888888 68999999995
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCCCcccHHHHHH
Q 025784 86 KLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQN 150 (248)
Q Consensus 86 ~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~dG~LS~~EL~~ 150 (248)
.-|.+= -+.+..+ --+..+|+.+=+++. +|..+||..
T Consensus 812 ddl~R~-----------------------~e~l~~~----~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 812 DDLERE-----------------------YEDLDTE----LRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hHhhhh-----------------------hhhhcHH----HHHHHHHHHHHcchh-HHHHHHHHh
Confidence 544330 1111111 147778888888765 788888885
No 158
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=31.91 E-value=56 Score=24.49 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHH
Q 025784 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (248)
Q Consensus 140 dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil 198 (248)
||.++.+|++.+..-+....++++.. ...+.++++..-.+. ...+..++...++..+
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 72 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFD-RERLIALLDKLLALL-RPEGLAALLKAAAKLL 72 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCC-HHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhC
Confidence 57888888886665554344454332 334445555432221 1234566665555544
No 159
>PRK11409 antitoxin YefM; Provisional
Probab=31.34 E-value=1.2e+02 Score=22.71 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHh
Q 025784 78 EFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFA 133 (248)
Q Consensus 78 ~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~ 133 (248)
.|+|++|+..|..++-.+.+. ..||+|.+=++..+ .+-+.++|+...+.++-
T Consensus 3 ~i~~s~~R~~l~~~l~~v~~~--~epv~ITr~g~~~~--Vl~S~~~yesl~Etl~l 54 (83)
T PRK11409 3 TISYSEARQNLSATMMKAVED--HAPILITRQNGEAC--VLMSLEEYNSLEETAYL 54 (83)
T ss_pred eEcHHHHHHHHHHHHHHHhcc--CCcEEEEeCCCCCE--EEEeHHHHHHHHHHHHH
Confidence 478999999999987666554 67887665544222 24455667666555443
No 160
>PF09987 DUF2226: Uncharacterized protein conserved in archaea (DUF2226); InterPro: IPR019249 This entry includes hypothetical proteins of unknown function.
Probab=30.75 E-value=2.7e+02 Score=26.11 Aligned_cols=86 Identities=16% Similarity=0.338 Sum_probs=52.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALA 206 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A~~L~ 206 (248)
.....+.+.-.+.+ .|||+||-+ ++ |+-++. .+.++++++.+=.-..-.+.-++|.....+++..+-..|.
T Consensus 163 ~A~e~~eEii~E~~-slsReeLLK---kl----gIk~p~-ee~Ie~lle~~f~ps~~el~~~~~e~~~~~i~~~i~~~l~ 233 (297)
T PF09987_consen 163 SAKEEFEEIIKEEN-SLSREELLK---KL----GIKEPD-EEEIENLLEDYFEPSKEELIEEDLEEIKNKIIEKIKNSLK 233 (297)
T ss_pred hHHHHHHHHhcCCc-cCCHHHHHH---Hh----CCCCCC-HHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 35555556655544 499999875 33 554443 5668888888433234445667777777777777776666
Q ss_pred cCC----eEEEeccccccC
Q 025784 207 DKH----IIIIPNIKIIDG 221 (248)
Q Consensus 207 ~~P----V~v~~~~~~~dG 221 (248)
+.| +.|-...+..+|
T Consensus 234 ~~~~~~d~~v~l~i~~~~~ 252 (297)
T PF09987_consen 234 NILGIQDVLVDLKIEYEEG 252 (297)
T ss_pred cCCCcceeEEEEEeecccc
Confidence 555 444454444454
No 161
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=30.49 E-value=64 Score=24.50 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=35.6
Q ss_pred HHHhCCCCCcccCHHHHHHH-----HHHHHHHHHHHhccCCeEEEeccccccChhHHH
Q 025784 174 LKKHGAEGEEELGQAQFTEL-----LRQVLQDIVDALADKHIIIIPNIKIIDGSKLRM 226 (248)
Q Consensus 174 ~~e~D~d~DG~Id~eEF~~l-----m~kil~~~A~~L~~~PV~v~~~~~~~dGs~l~~ 226 (248)
.+..+.+.||-|..+-+... |..-...+++.|..+|++-+. .||..+||
T Consensus 29 ~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~----ed~~~VRR 82 (82)
T cd08032 29 REQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELN----LEGTRIRR 82 (82)
T ss_pred HHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEc----CCCCccCC
Confidence 34467778899877766532 223346789999999999998 88887764
No 162
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=30.46 E-value=6.6e+02 Score=26.37 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=36.5
Q ss_pred hHHHHHHHHH-hCCCCCc---ccCHHHHHHHHHHHHHHHHH--HhccCCeEEEeccccccChhHHHHHhc
Q 025784 167 FPQLNDILKK-HGAEGEE---ELGQAQFTELLRQVLQDIVD--ALADKHIIIIPNIKIIDGSKLRMVIQH 230 (248)
Q Consensus 167 ~~~~~~i~~e-~D~d~DG---~Id~eEF~~lm~kil~~~A~--~L~~~PV~v~~~~~~~dGs~l~~~l~~ 230 (248)
++.+++.+.+ .-....| .++-+...+++.++-..+.. .-+..||++.+ ..+|+++++
T Consensus 586 ~p~~E~~l~~~i~~~~~g~~~~l~p~~~~~li~~~~~~~~~~~~~g~~pVll~s-------~~~R~~lr~ 648 (677)
T TIGR01399 586 DPEIEELIRGAIRQTSTGTYLALDPDDSEQLLDQIRQAVGDLPRAPSQPVLLTS-------MDIRRYVRK 648 (677)
T ss_pred CHHHHHHHHHHHhccCCCCccccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeC-------HHHHHHHHH
Confidence 4567777765 3222233 37777777777766666554 34567999888 567777754
No 163
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=30.15 E-value=18 Score=28.67 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 140 dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
||.++.+|++.+..-+....++|| ...++++..++.-....++..+|...++
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSP----EEAEELIELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSC----HHHHHHHHHHCHHHHHCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCH----HHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 689999998866555544456653 3344444444443334566666654443
No 164
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.89 E-value=71 Score=31.49 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=42.1
Q ss_pred cccc-CCCCCCCccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHH
Q 025784 19 QPLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHA 84 (248)
Q Consensus 19 ~~F~-lDd~d~G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (248)
+.|- |---+ |+||..--+. +..+ .+|...+-.+-+..|.| .+|.++-+||
T Consensus 448 e~fy~l~p~~-gk~sg~~ak~~mv~s---------klpnsvlgkiwklad~d------~dg~ld~eef 499 (532)
T KOG1954|consen 448 EIFYTLSPVN-GKLSGRNAKKEMVKS---------KLPNSVLGKIWKLADID------KDGMLDDEEF 499 (532)
T ss_pred hhhhcccccC-ceeccchhHHHHHhc---------cCchhHHHhhhhhhcCC------cccCcCHHHH
Confidence 5677 77556 9999988888 6653 58888999999999999 8999999999
No 165
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=29.49 E-value=26 Score=31.39 Aligned_cols=51 Identities=12% Similarity=0.280 Sum_probs=0.0
Q ss_pred HhhhCCCC-CCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHH
Q 025784 132 FADLDTED-EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQF 190 (248)
Q Consensus 132 F~~lD~D~-dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF 190 (248)
|-++|.-. ||++|..||.+.-.-+ +| -..-....|+..|.|+||-|+.+|.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~-----ip---me~c~~~f~e~cd~~nd~~ial~ew 244 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL-----IP---MEHCTTRFFETCDLDNDKYIALDEW 244 (259)
T ss_pred eccccCCCccccccccccccccCCc-----cc---HHhhchhhhhcccCCCCCceeHHHh
No 166
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=28.98 E-value=1.4e+02 Score=18.34 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=17.6
Q ss_pred cccHHHHHHHHhccCcccCCCCCCChHH
Q 025784 142 KVCKGEIQNALGHMGVEFGVPPFSEFPQ 169 (248)
Q Consensus 142 ~LS~~EL~~al~~lgv~~Glpp~~~~~~ 169 (248)
.++..+|+..+... |+|..+.-.+
T Consensus 3 ~l~~~~Lk~~l~~~----gl~~~G~K~~ 26 (35)
T smart00513 3 KLKVSELKDELKKR----GLSTSGTKAE 26 (35)
T ss_pred cCcHHHHHHHHHHc----CCCCCCCHHH
Confidence 57889999888775 6777665444
No 167
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.68 E-value=1.1e+02 Score=18.98 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=17.6
Q ss_pred cccHHHHHHHHhccCcccCCCCCCChHH
Q 025784 142 KVCKGEIQNALGHMGVEFGVPPFSEFPQ 169 (248)
Q Consensus 142 ~LS~~EL~~al~~lgv~~Glpp~~~~~~ 169 (248)
.++..||+..+.+. |+|..+...+
T Consensus 3 ~l~v~eLk~~l~~~----gL~~~G~K~~ 26 (35)
T PF02037_consen 3 KLTVAELKEELKER----GLSTSGKKAE 26 (35)
T ss_dssp TSHHHHHHHHHHHT----TS-STSSHHH
T ss_pred cCcHHHHHHHHHHC----CCCCCCCHHH
Confidence 56789999998875 7887776554
No 168
>PF13362 Toprim_3: Toprim domain
Probab=28.50 E-value=78 Score=23.55 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=50.6
Q ss_pred HHHHh-hccCCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCCCC--CcccHHHHHHHHhccCcccC-CCCCCChH
Q 025784 93 TAIAD-ELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDE--GKVCKGEIQNALGHMGVEFG-VPPFSEFP 168 (248)
Q Consensus 93 ~~iA~-~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D~d--G~LS~~EL~~al~~lgv~~G-lpp~~~~~ 168 (248)
.+++. ......-+++.++.+.++.+...+. ...+.=..|.|.. |.=....+...+...|...- ++|.....
T Consensus 10 tals~~~~~~~~~~~a~~~~~nl~~~~~~~~-----~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p~~~g~ 84 (96)
T PF13362_consen 10 TALSIAQQATGVPVVAALGAGNLKNVAIPEP-----GRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEPGPEGK 84 (96)
T ss_pred HHHHHHHhcCCCeEEEEEChhhhhhhcCCCC-----CCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECCCCCCc
Confidence 34454 4455556778888888887765543 5556677788888 76666667667766553322 23322234
Q ss_pred HHHHHHHHhCC
Q 025784 169 QLNDILKKHGA 179 (248)
Q Consensus 169 ~~~~i~~e~D~ 179 (248)
.|++++.+...
T Consensus 85 D~ND~l~~~G~ 95 (96)
T PF13362_consen 85 DWNDLLQARGK 95 (96)
T ss_pred hHHHHHHhhCC
Confidence 67787776543
No 169
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=28.13 E-value=1.2e+02 Score=23.22 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=35.8
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccc-hhhhhcCCcchhHHHHHHHHhhhCCCCCCc
Q 025784 76 IKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGN-MLKLFLGNEDDFTMLAENLFADLDTEDEGK 142 (248)
Q Consensus 76 ~g~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs-~l~~fl~de~~f~~~~~~~F~~lD~D~dG~ 142 (248)
+..++|+++.+++++ +-...+++|+.+--+|-. +.-.+=.++ ++..||+-+-.+++-.
T Consensus 17 d~~~s~e~L~~~v~~----~c~~~~~q~ft~kw~DEEGDp~tiSS~~-----EL~EA~rl~~~n~~~~ 75 (83)
T cd06404 17 DPSISLEELCNEVRD----MCRFHNDQPFTLKWIDEEGDPCTISSQM-----ELEEAFRLYELNKDSE 75 (83)
T ss_pred CCCcCHHHHHHHHHH----HhCCCCCCcEEEEEECCCCCceeecCHH-----HHHHHHHHHHhcCccc
Confidence 457899999999888 556678888887666531 111111122 4666666666665543
No 170
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=27.06 E-value=2.9e+02 Score=21.19 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=32.8
Q ss_pred ccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHH
Q 025784 30 TVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (248)
Q Consensus 30 ~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (248)
.||..||..+++ -+|.++.+.....+++-+... .=...+-+|=..++++
T Consensus 14 ~iT~~eLlkysk------qy~i~it~~QA~~I~~~lr~k------~inIfn~~~r~~llke 62 (85)
T PF11116_consen 14 NITAKELLKYSK------QYNISITKKQAEQIANILRGK------NINIFNEQERKKLLKE 62 (85)
T ss_pred cCCHHHHHHHHH------HhCCCCCHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHH
Confidence 689999999765 267788888888888777665 1223344454444444
No 171
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=26.93 E-value=1.1e+02 Score=31.88 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=41.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHH
Q 025784 126 MLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQF 190 (248)
Q Consensus 126 ~~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF 190 (248)
..+..+|..+|..++|.|+-.++-..|..+.. |- ..+.+.=+++-+|.+++ ..+.+|=
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--~~----~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--GD----ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--hh----HHHHHHHHHhhccCCcc-ccccccc
Confidence 36899999999999999999999988877632 10 02234445666777777 6666554
No 172
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=26.46 E-value=1.5e+02 Score=23.47 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHhccCCeE
Q 025784 171 NDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHII 211 (248)
Q Consensus 171 ~~i~~e~D~d~DG~Id~eEF~~lm~kil~~~A~~L~~~PV~ 211 (248)
..+.+..-.-|=|..+.+|-.+.+++.+.+++..|+.+|-.
T Consensus 39 ~~~~~~l~~~G~gr~~~ee~~~~~~~~l~aLs~~Lg~~~~l 79 (126)
T cd03211 39 REARRKLKAIGWDDKTLDQVIEEVDQCCQALSQRLGTQPYF 79 (126)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 34455555556678899999999999999999999999954
No 173
>PLN02230 phosphoinositide phospholipase C 4
Probab=25.76 E-value=2.6e+02 Score=28.80 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=44.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhC-------CCCCcccCHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHG-------AEGEEELGQAQFTELLR 195 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D-------~d~DG~Id~eEF~~lm~ 195 (248)
.+..+|..+-.+ ++.+|.++|+.+|..- +|.+...+.+.+..++.++- .-..+.++.+.|...|-
T Consensus 30 ei~~lf~~~s~~-~~~mt~~~l~~FL~~~---Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 30 DVRDLFEKYADG-DAHMSPEQLQKLMAEE---GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHHHh---CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 599999999554 4899999999999773 44433223444566665431 12345689999998664
No 174
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=25.50 E-value=2.3e+02 Score=23.70 Aligned_cols=48 Identities=13% Similarity=0.332 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhcc-CCCeEEEEeccchhhhhcCCcchhHHHHHHHHhhhCCC
Q 025784 79 FDRDHASKLASDYITAIADELK-DDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTE 138 (248)
Q Consensus 79 I~~~EF~~~l~~il~~iA~~L~-~~pivv~~lDGs~l~~fl~de~~f~~~~~~~F~~lD~D 138 (248)
|+++++.+..+++...|+...+ ..|++|+++.|.-. .+..+.+.++.+
T Consensus 3 is~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~------------~a~~l~~~L~~~ 51 (166)
T TIGR01203 3 IPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFP------------FFADLIRYIAVP 51 (166)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHH------------HHHHHHHhcCCC
No 175
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=25.44 E-value=2.2e+02 Score=23.97 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=33.4
Q ss_pred CCCCCChHHH---HHHHHHhCCCCCcccCHHHHHHHHH--------------HHHHHHHHHhccCCeEEE
Q 025784 161 VPPFSEFPQL---NDILKKHGAEGEEELGQAQFTELLR--------------QVLQDIVDALADKHIIII 213 (248)
Q Consensus 161 lpp~~~~~~~---~~i~~e~D~d~DG~Id~eEF~~lm~--------------kil~~~A~~L~~~PV~v~ 213 (248)
+||....+.+ ..-++..+. ++|..+.+||..|-+ ..++-+-+++...||.-.
T Consensus 62 VPPlP~K~~~~~~~~k~~klg~-~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~ 130 (141)
T cd07292 62 IPPAPPRPDFDASREKLQKLGE-GEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRK 130 (141)
T ss_pred ECCCCCCccccchHHHHHhhcc-ccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 5665444332 445667765 467777788886555 345677788888888643
No 176
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=25.37 E-value=1.4e+02 Score=22.26 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=36.0
Q ss_pred HHhCCCCCcccCHHHHHHH--HHHH---HHHHHHHhccCCeEEEeccccccChhHHH
Q 025784 175 KKHGAEGEEELGQAQFTEL--LRQV---LQDIVDALADKHIIIIPNIKIIDGSKLRM 226 (248)
Q Consensus 175 ~e~D~d~DG~Id~eEF~~l--m~ki---l~~~A~~L~~~PV~v~~~~~~~dGs~l~~ 226 (248)
+....|.||-|..+.+... |+.+ ...+++.|+.++++.+. .||..+||
T Consensus 25 ~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~----~d~~~VRR 77 (77)
T cd08033 25 KHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVS----EDGKKVRR 77 (77)
T ss_pred HHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEc----CCCCccCC
Confidence 3466688899987777632 3333 68899999999999988 88877764
No 177
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=25.08 E-value=1.1e+02 Score=35.16 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=45.2
Q ss_pred cccc-CC-CCCCCccCHHHHHHHHHhcccccccCCCCChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHHH
Q 025784 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (248)
Q Consensus 19 ~~F~-lD-d~d~G~ls~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (248)
..|+ .| |+. |.||+.++...++... ..+..+++-++.-...| .+...+|++|..-+.+
T Consensus 4061 dtfkeydpdgk-giiskkdf~kame~~k-------~ytqse~dfllscae~d------end~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGK-GIISKKDFHKAMEGHK-------HYTQSEIDFLLSCAEAD------ENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCC-ccccHHHHHHHHhccc-------cchhHHHHHHHHhhccC------ccccccHHHHHHHhcC
Confidence 6799 99 999 9999999999544221 24567788888877788 6889999999776654
No 178
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=24.97 E-value=1.1e+02 Score=25.05 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHhccCCeEEEeccccccChhHHHHHhch------hhhhhhhccc
Q 025784 185 LGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMVIQHL------VFLCRESWHK 241 (248)
Q Consensus 185 Id~eEF~~lm~kil~~~A~~L~~~PV~v~~~~~~~dGs~l~~~l~~~------~~~~~~~~~~ 241 (248)
+++.++.+++ +..+..+.||+...-. +.|+.||+.+..- +++||.+|..
T Consensus 40 i~~~~~ie~i-------~~~~~~k~VIILTD~D-~~Ge~Irk~l~~~l~~~~~~~id~~~~~~ 94 (127)
T COG1658 40 INSLETIELI-------KKAQKYKGVIILTDPD-RKGERIRKKLKEYLPGAKGAFIDREIRNK 94 (127)
T ss_pred cchHHHHHHH-------HHhhccCCEEEEeCCC-cchHHHHHHHHHHhcccccccccHHHhhh
Confidence 4556666554 5567889999988665 7899999988765 4889999876
No 179
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=24.89 E-value=1.9e+02 Score=21.44 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=7.8
Q ss_pred CCcccHHHHHH
Q 025784 140 EGKVCKGEIQN 150 (248)
Q Consensus 140 dG~LS~~EL~~ 150 (248)
||.++.+|...
T Consensus 13 DG~v~~~E~~~ 23 (106)
T cd07316 13 DGRVSEAEIQA 23 (106)
T ss_pred cCCcCHHHHHH
Confidence 57777777764
No 180
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=24.80 E-value=3e+02 Score=29.19 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCeEEEEec----------cchh---------------hhhcCCc--chhHHHHHHHH
Q 025784 80 DRDHASKLASDYITAIADELKDDPLVVCVLD----------GNML---------------KLFLGNE--DDFTMLAENLF 132 (248)
Q Consensus 80 ~~~EF~~~l~~il~~iA~~L~~~pivv~~lD----------Gs~l---------------~~fl~de--~~f~~~~~~~F 132 (248)
.+++|.+++...+..++..+...||++=++| |.+. |-++..| +.|...+..+.
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~pv~iRtlD~~~~~~~~l~Ggdk~~~~E~NP~LG~RGiR~~l~~p~~~lf~~qlraI~ 627 (795)
T PRK06464 548 PEEFYVDKLAEGIATVAAAFYPKPVIVRLSDFKSNEYANLIGGERYEPEEENPMLGFRGASRYLSESFREAFALECEAIK 627 (795)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCCchhhhHHhccCCcCCCCCCCCccccchhhhcccCchHHHHHHHHHHHH
Confidence 4567878888888999999999999999999 5443 4456667 88999999999
Q ss_pred hhhC-CCCCC-------cccHHHHHHHHhcc
Q 025784 133 ADLD-TEDEG-------KVCKGEIQNALGHM 155 (248)
Q Consensus 133 ~~lD-~D~dG-------~LS~~EL~~al~~l 155 (248)
+.+| ..-.| .=|.+|++.+...+
T Consensus 628 rald~~G~~~~~ImvPmV~s~eEa~~~~~~~ 658 (795)
T PRK06464 628 RVREEMGLTNVEVMIPFVRTVEEAEKVIELL 658 (795)
T ss_pred HHHHhcCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 9999 43345 13788888766544
No 181
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=24.60 E-value=86 Score=23.20 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=18.9
Q ss_pred CCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHh
Q 025784 139 DEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKH 177 (248)
Q Consensus 139 ~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~ 177 (248)
..|+||.++|..+|.... + ++..+++|+..+
T Consensus 18 ~~G~lT~~eI~~~L~~~~----~----~~e~id~i~~~L 48 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD----L----DPEQIDEIYDTL 48 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----------HHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC----C----CHHHHHHHHHHH
Confidence 368999999999986432 2 366777777644
No 182
>PLN02952 phosphoinositide phospholipase C
Probab=24.38 E-value=2e+02 Score=29.63 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=38.8
Q ss_pred CCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Q 025784 139 DEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (248)
Q Consensus 139 ~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~k 196 (248)
+.|.++.+|.+.+...+......| .+.+..||.++..++ +.++.++|...+++
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~----r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEP----PDDVKDVFCKFSVGG-GHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCC----hHHHHHHHHHHhCCC-CccCHHHHHHHHHH
Confidence 468999999986665553222223 567999999986544 67999999999875
No 183
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=24.09 E-value=1.4e+02 Score=24.05 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=45.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~kil~~ 200 (248)
....+|-.+..-++-..|...|+++|...|.+. +.+.++.+|+++.- + +-+|-.+.=+.-|-+
T Consensus 2 kyvaAYLL~~lgGn~~psa~DikkIl~sVG~E~------d~e~i~~visel~G----K-~i~ElIA~G~eklAs 64 (112)
T KOG3449|consen 2 KYVAAYLLAVLGGNASPSASDIKKILESVGAEI------DDERINLVLSELKG----K-DIEELIAAGREKLAS 64 (112)
T ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHhCccc------CHHHHHHHHHHhcC----C-CHHHHHHHhHHHHhc
Confidence 366788888888888999999999999988753 36678889988732 2 555554444444433
No 184
>PRK14135 recX recombination regulator RecX; Provisional
Probab=23.75 E-value=5.1e+02 Score=22.89 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=19.9
Q ss_pred ccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhC
Q 025784 143 VCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHG 178 (248)
Q Consensus 143 LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D 178 (248)
-++.+|+.-|.+- |+| .+.+++++.+++
T Consensus 123 ~g~~~I~~kL~~k----Gi~----~~~Ie~~l~~l~ 150 (263)
T PRK14135 123 KGPRVIKQKLLQK----GIE----DEIIEEALSEYT 150 (263)
T ss_pred cchHHHHHHHHHc----CCC----HHHHHHHHHhCC
Confidence 4577888888775 554 667888888763
No 185
>PLN02222 phosphoinositide phospholipase C 2
Probab=23.00 E-value=2.7e+02 Score=28.62 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=46.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCC-CCCcccCHHHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGA-EGEEELGQAQFTELLRQ 196 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~-d~DG~Id~eEF~~lm~k 196 (248)
.+..+|..+-. ++.+|.++|+.+|... +|.+.. +.+...+||+++.. -..+.++.+.|...|..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~---Q~~~~~-~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDV---QKQDKA-TREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHh---cCCccC-CHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 58999999854 4799999999998773 565432 34557788887532 24566899999988854
No 186
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=22.92 E-value=1.1e+02 Score=21.99 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCCCcccCHHHHHHHHH
Q 025784 170 LNDILKKHGAEGEEELGQAQFTELLR 195 (248)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (248)
+..||..+.. +.+.++.++|...|+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~ 26 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLR 26 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHH
Confidence 4556666644 566667777766665
No 187
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=22.41 E-value=75 Score=25.89 Aligned_cols=31 Identities=6% Similarity=-0.070 Sum_probs=22.0
Q ss_pred CChhhHHHHHHhhcCCCCCcccccccccHHHHHHHHH
Q 025784 53 LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (248)
Q Consensus 53 ~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (248)
|.+++.+.+=+++..| ..|.+.|-||+..++
T Consensus 4 LtDeQFdrLW~e~Pvn------~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVN------AKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-------TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCC------ccCCEeHHHHHHHcc
Confidence 5688899999999999 699999999966554
No 188
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=22.27 E-value=1.1e+03 Score=26.09 Aligned_cols=68 Identities=12% Similarity=0.229 Sum_probs=50.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccC----CCCCCChHHHHHHHHHhCCC----CCcccCHHHHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFG----VPPFSEFPQLNDILKKHGAE----GEEELGQAQFTELL 194 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~G----lpp~~~~~~~~~i~~e~D~d----~DG~Id~eEF~~lm 194 (248)
.++++|..+-.++.-++|+++|-.+|.+--.+.- +-|+-++..+..+++.+-.| ..|.++-+-|+..+
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 4999999999998889999999999976532221 22344577889999976555 45777877776543
No 189
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.26 E-value=1.5e+02 Score=29.41 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=44.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHhCCCCCcccCHHHHH
Q 025784 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFT 191 (248)
Q Consensus 127 ~~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~ 191 (248)
..+++|-.+-.= +|+||-..-+..+.. .-+| ..++-.|-+-.|.|.||.+|-+||.
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv~----sklp----nsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMVK----SKLP----NSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHHh----ccCc----hhHHHhhhhhhcCCcccCcCHHHHH
Confidence 477888888764 799988777766644 2455 5678889999999999999999995
No 190
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=21.73 E-value=9.5e+02 Score=25.25 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=45.9
Q ss_pred HHHHHHHHhcc-C----cccC-CCCCCChHHHHHHHHH-hCCCCCc---ccCHHHHHHHHHHHHHHHHHH--hccCCeEE
Q 025784 145 KGEIQNALGHM-G----VEFG-VPPFSEFPQLNDILKK-HGAEGEE---ELGQAQFTELLRQVLQDIVDA--LADKHIII 212 (248)
Q Consensus 145 ~~EL~~al~~l-g----v~~G-lpp~~~~~~~~~i~~e-~D~d~DG---~Id~eEF~~lm~kil~~~A~~--L~~~PV~v 212 (248)
.+..|.+|.+- + .+.| +|...=++.+++++.+ .-...+| .++-+...++++++-..+.+. -+..||++
T Consensus 575 tE~VR~aL~RqI~~~~~~~~g~L~vi~L~p~lE~~l~~si~~t~~g~~laLdP~~~~~li~~l~~~~~~~~~~g~~pVLL 654 (697)
T PRK06012 575 TEHVRQRLGRQIVQQYKGEDGELPVITLDPELEQLLLQSLQGTGGGSYLALEPGLAERLLQSLQEALERQEMKGEPPVLL 654 (697)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeeEEEEECHHHHHHHHHHHhhccCCCccCcCHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 45566666442 1 1123 3333234567777775 3322334 368777777777766666543 35779988
Q ss_pred EeccccccChhHHHHHhc
Q 025784 213 IPNIKIIDGSKLRMVIQH 230 (248)
Q Consensus 213 ~~~~~~~dGs~l~~~l~~ 230 (248)
.. ..+|+++++
T Consensus 655 tS-------~~iRr~lr~ 665 (697)
T PRK06012 655 VS-------PALRPYLRR 665 (697)
T ss_pred cC-------HHHHHHHHH
Confidence 88 568888765
No 191
>PF12910 RelB_N: Antitoxin of toxin-antitoxin stability system N-terminal; PDB: 3K6Q_C.
Probab=21.63 E-value=1.1e+02 Score=20.27 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCeEEEEeccch
Q 025784 78 EFDRDHASKLASDYITAIADELKDDPLVVCVLDGNM 113 (248)
Q Consensus 78 ~I~~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~ 113 (248)
.++|+|.+..|++++-.++.+- .|++|.+=+|..
T Consensus 3 ~~~~~eAR~~ls~l~d~v~~~~--~~viI~R~~~~~ 36 (46)
T PF12910_consen 3 TVNYSEARNNLSKLIDRVVNGE--EVVIITRRGKPS 36 (46)
T ss_dssp EEEHHHHHHTHHHHHHHHHHT----EE-EEE-TTEE
T ss_pred EEeHHHHHHhHHHHHHHHHcCC--CeEEEEecCCCc
Confidence 5799999999999988777653 444466655443
No 192
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=21.57 E-value=2.8e+02 Score=19.32 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=32.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCcccCCCCCCChHHHHHHHHHh
Q 025784 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKH 177 (248)
Q Consensus 128 ~~~~F~~lD~D~dG~LS~~EL~~al~~lgv~~Glpp~~~~~~~~~i~~e~ 177 (248)
++.+++.|+++...=||.+|...-+.+.|.. -+|+......+..+++++
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N-~l~~~~~~s~~~~~~~~f 54 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPN-ELPEPKKKSLWRIFLKQF 54 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSS-STTTTTSSSHHHHHHHHT
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhcccc-cccccccCcHHHHHHHHH
Confidence 6778888886666668888888888777653 254443344566666655
No 193
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=21.52 E-value=2.4e+02 Score=20.59 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=10.6
Q ss_pred CCcccHHHHHHHHhc
Q 025784 140 EGKVCKGEIQNALGH 154 (248)
Q Consensus 140 dG~LS~~EL~~al~~ 154 (248)
+|+++-+|++..+++
T Consensus 28 ~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 28 SGKLRGEEINSLLEA 42 (75)
T ss_pred cCcccHHHHHHHHHH
Confidence 577777777777655
No 194
>PRK15330 cell invasion protein SipD; Provisional
Probab=21.17 E-value=7.4e+02 Score=23.78 Aligned_cols=106 Identities=13% Similarity=0.255 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEEEeccchhhhhcCCcchhHHHHH---HHHhhhCC--------CCCC--cccHHH
Q 025784 81 RDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAE---NLFADLDT--------EDEG--KVCKGE 147 (248)
Q Consensus 81 ~~EF~~~l~~il~~iA~~L~~~pivv~~lDGs~l~~fl~de~~f~~~~~---~~F~~lD~--------D~dG--~LS~~E 147 (248)
|++|.+.++.+|..++..++-. =||.++ -=+.++|.+.+. ..|..+.+ .++| ..+..|
T Consensus 160 YTd~yQsfne~lSkls~~IsaG------sDGntI---kFd~~slk~~i~~lidKY~~~~k~~~l~pa~~~~~~~~~t~aE 230 (343)
T PRK15330 160 YTDFYQAFSDILSKMGGWLLPG------KDGNTV---KLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAE 230 (343)
T ss_pred HHHHHHHHHHHHHHHhhhcccC------CCCCee---eecHHHHHHHHHHHHHhcccccccceecccccccccccCCHHH
Confidence 8888888888888887666542 244433 112222322222 22222111 1122 356788
Q ss_pred HHHHHhccCcccC-CCCCC-------ChHHHHHHHHHhCC---CCCc---ccCHHHHHHHHH
Q 025784 148 IQNALGHMGVEFG-VPPFS-------EFPQLNDILKKHGA---EGEE---ELGQAQFTELLR 195 (248)
Q Consensus 148 L~~al~~lgv~~G-lpp~~-------~~~~~~~i~~e~D~---d~DG---~Id~eEF~~lm~ 195 (248)
++..+..++-..+ +.+.+ +..-+++|++.++. +++| .|+-.+|.+...
T Consensus 231 ae~W~keLgl~~~~vk~~Gsgf~V~iD~~~I~~m~~Sl~g~g~~GkGS~~~I~tAsYQAWqA 292 (343)
T PRK15330 231 ARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQS 292 (343)
T ss_pred HHHHHHHhCCCccccccCCCceEEecCcHHHHHHHHhccCCCCCCCCCccccCHHHHHHHHH
Confidence 8877766532111 11111 12248888888774 4434 588788876543
No 195
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=20.89 E-value=5.3e+02 Score=21.94 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=26.7
Q ss_pred EeccchhhhhcCCcchhHHHHHHHHhhh-CCCCCCcccHHHHHHHHhcc
Q 025784 108 VLDGNMLKLFLGNEDDFTMLAENLFADL-DTEDEGKVCKGEIQNALGHM 155 (248)
Q Consensus 108 ~lDGs~l~~fl~de~~f~~~~~~~F~~l-D~D~dG~LS~~EL~~al~~l 155 (248)
-+|...+-+|+.....++..+-..|-.. |--+- .| .+=||..|.++
T Consensus 47 ~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~-~i-~~ALR~~l~~f 93 (187)
T smart00222 47 GLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAK-DL-DQALREFLESF 93 (187)
T ss_pred CCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCC-cH-HHHHHHHHHhC
Confidence 4577888889987666776666655544 43321 22 34456555543
No 196
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=20.81 E-value=2e+02 Score=24.60 Aligned_cols=26 Identities=4% Similarity=0.266 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHH----------HHHHhccCCeE
Q 025784 186 GQAQFTELLRQVLQD----------IVDALADKHII 211 (248)
Q Consensus 186 d~eEF~~lm~kil~~----------~A~~L~~~PV~ 211 (248)
+++||+....+|-.. +++.|+.+|++
T Consensus 102 ~deel~~~~e~i~~~v~~Gn~Sl~~lsr~l~~sp~f 137 (160)
T PF09824_consen 102 SDEELRDYVEKIEKEVEAGNTSLSDLSRKLGISPVF 137 (160)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCHHH
Confidence 678888888877554 45555555554
No 197
>PF07273 DUF1439: Protein of unknown function (DUF1439); InterPro: IPR010835 This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.; PDB: 3L6I_B.
Probab=20.58 E-value=1.4e+02 Score=24.74 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEeccc
Q 025784 188 AQFTELLRQVLQDIVDALADKHIIIIPNIK 217 (248)
Q Consensus 188 eEF~~lm~kil~~~A~~L~~~PV~v~~~~~ 217 (248)
.+...+...++..++.-|..+||+..-.++
T Consensus 104 ~~l~~l~~~l~~~l~~~l~~~PVY~L~~~~ 133 (152)
T PF07273_consen 104 GQLQPLIPYLNQSLAQYLENQPVYTLDPED 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCCS-SEE--TTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeCccc
Confidence 446667778889999999999999987443
No 198
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.52 E-value=1.3e+02 Score=20.05 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=19.8
Q ss_pred CccCHHHHHH-HHHhcccccccCCCCChhhHHHHHHhh
Q 025784 29 STVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHI 65 (248)
Q Consensus 29 G~ls~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~ 65 (248)
|.|+ |+++ +..+.. .|.-+++..++.+++..
T Consensus 16 GlI~--~~~~~l~~l~~----~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 16 GLIS--EVKPLLDRLQQ----AGFRISPKLIEEILRRA 47 (48)
T ss_pred CChh--hHHHHHHHHHH----cCcccCHHHHHHHHHHc
Confidence 6776 6666 444432 25668888888887753
No 199
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=20.23 E-value=99 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.429 Sum_probs=22.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhccCCeEEEe
Q 025784 184 ELGQAQFTELLRQVLQDIVDALADKHIIIIP 214 (248)
Q Consensus 184 ~Id~eEF~~lm~kil~~~A~~L~~~PV~v~~ 214 (248)
.|+..||+.-+.+++..++.+ ..||+|.+
T Consensus 3 ~vs~~e~r~~~~~~l~~v~~~--~~pv~It~ 31 (75)
T PF02604_consen 3 TVSITEFRNNFSELLDEVEEG--EEPVIITK 31 (75)
T ss_dssp EEEHHHHHHTHHHHHHHHHHC--T-EEEEEE
T ss_pred EecHHHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 367889999999999999886 55666665
No 200
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.03 E-value=1.2e+02 Score=26.48 Aligned_cols=31 Identities=13% Similarity=0.480 Sum_probs=25.6
Q ss_pred HHHHhCCCCCcccCHHHHHHHHHHHHHHHHH
Q 025784 173 ILKKHGAEGEEELGQAQFTELLRQVLQDIVD 203 (248)
Q Consensus 173 i~~e~D~d~DG~Id~eEF~~lm~kil~~~A~ 203 (248)
++..+|.|+||..+.+|=..+-+.++..++.
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~~~~l~~ 85 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEIFDNLKE 85 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHHHhhhhh
Confidence 4557999999999999988888888777655
Done!